BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 537021.9.peg.753_1 (1033 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|315122785|ref|YP_004063274.1| DNA polymerase III subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496187|gb|ADR52786.1| DNA polymerase III subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1226 Score = 1889 bits (4894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 896/1034 (86%), Positives = 969/1034 (93%), Gaps = 1/1034 (0%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 L Q +E+SP FVHLQVHSSYSLLEGALSLNNILDK ADQQPAIAITDTNNLF ALEFSQ Sbjct: 15 LNQQVERSPGFVHLQVHSSYSLLEGALSLNNILDKAIADQQPAIAITDTNNLFGALEFSQ 74 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 KAC AGIQPIIGCQ++IDMQD L++T++GK+ FP +PSIVLLVS AEGYQRLIELVSRMY Sbjct: 75 KACLAGIQPIIGCQIEIDMQDGLEVTHKGKSFFPELPSIVLLVSKAEGYQRLIELVSRMY 134 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 LL+QG +SVRI SWLQEIGTEGLIMLTGGSSG IDRAF FN+ Q+AEKRLL+FK +FG+ Sbjct: 135 LLNQGHKSVRIYFSWLQEIGTEGLIMLTGGSSGSIDRAFLFNNPQIAEKRLLSFKNIFGN 194 Query: 181 RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 RLYVNLQRHRGYDRYRESQV+QLAY HELPLVATNN+LFLS+EDY+AHDVLMAVAHSTV+ Sbjct: 195 RLYVNLQRHRGYDRYRESQVIQLAYKHELPLVATNNALFLSQEDYDAHDVLMAVAHSTVI 254 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 SQ+DRPRVTPDHYLKNR+EM+S+F+DLPEAL+NTVEIARRCSFILQVH PILPRFI+KEC Sbjct: 255 SQEDRPRVTPDHYLKNRAEMLSMFADLPEALDNTVEIARRCSFILQVHKPILPRFIDKEC 314 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 DD +K EENELR KA+ GLE RL+QG IAKGY AQDYR+RLDFEL+VIARMKFSGYFLIV Sbjct: 315 DDFEKIEENELRTKAIEGLETRLSQGIIAKGYSAQDYRKRLDFELDVIARMKFSGYFLIV 374 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI Sbjct: 375 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 434 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQDRRDEVI+YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP Sbjct: 435 DFCQDRRDEVIQYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 494 Query: 481 NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 N+PAHPVSL QAIADDSRF+EA L DP VDRLLEIS KLEGLYRHASTHAAGIVIGDRPL Sbjct: 495 NNPAHPVSLKQAIADDSRFQEAILDDPFVDRLLEISLKLEGLYRHASTHAAGIVIGDRPL 554 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 SQL+PMYRDVRSD+PVTQFNMKW+EKAGL+KFDFLGLKTLT+LQKSLD L QRG+KVDLS Sbjct: 555 SQLIPMYRDVRSDIPVTQFNMKWVEKAGLVKFDFLGLKTLTVLQKSLDLLEQRGIKVDLS 614 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 LIPFDDHETYHLLT KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI+NI Sbjct: 615 LIPFDDHETYHLLTKKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIENIT 674 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 +YNNRKNGKEKIVSIHPLID +LKETQGVI+YQEQVMQIAQLLSGYSLSEADVLRRAMGK Sbjct: 675 IYNNRKNGKEKIVSIHPLIDSILKETQGVIVYQEQVMQIAQLLSGYSLSEADVLRRAMGK 734 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KIKEEMDKQKERF+SGASKNG+S +AVNIFELLAKFADYGFNKSHAAAYAVISY+TAWM Sbjct: 735 KIKEEMDKQKERFVSGASKNGLSNIMAVNIFELLAKFADYGFNKSHAAAYAVISYRTAWM 794 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI+ PSV T CVDF+VG+ IYYSL Sbjct: 795 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIILPSVQTSCVDFEVGEKCIYYSL 854 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AAIKGVGT TA HIM ADKPF+SLEDFCSRVDSK+LNRRVLESL+FAGALDCFGYSR Sbjct: 855 AAIKGVGTITAHHIMTVRADKPFESLEDFCSRVDSKQLNRRVLESLIFAGALDCFGYSRE 914 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 QL QSLDNIQKYAQW+EKNRTN NIF E+G+FS+KI+LE+FSVENSS RFE+E+RVL Sbjct: 915 QLYQSLDNIQKYAQWIEKNRTNDQANIFVDEEGSFSEKISLEEFSVENSSARFEHERRVL 974 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFYFSGHPLDVYK IL+KMGIK YEES+A+++ + IRLA MV+SK+QKKTRKGSRIGWVT Sbjct: 975 GFYFSGHPLDVYKAILQKMGIKSYEESIASVKESIIRLAVMVMSKEQKKTRKGSRIGWVT 1034 Query: 1020 FSEPAKEYEANFFP 1033 FSEP KEYE FFP Sbjct: 1035 FSEPDKEYEGIFFP 1048 >gi|327194832|gb|EGE61666.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512] Length = 1165 Score = 1355 bits (3506), Expect = 0.0, Method: Compositional matrix adjust. Identities = 644/1031 (62%), Positives = 808/1031 (78%), Gaps = 6/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL+VHS+YSLLEGAL L IL K A D QPAIAITDTNNLF ALEFSQKA G+ Sbjct: 16 TPGFIHLRVHSAYSLLEGALPLKKILYKAAGDNQPAIAITDTNNLFVALEFSQKAMDDGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM+D L+ +G + +PSIVLL +T GY+RL++LVSR YL Sbjct: 76 QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q++ I SWL+E GTEGLI LTG +GP+D A AE RLLT K+LFGDRLYV L Sbjct: 136 QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHPAQAEARLLTLKRLFGDRLYVEL 195 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YD+ E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 196 QRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R+TPDHYLK+R+EM +F+DLPEALENT+EIARRCSF+L+ PILPRF D + E Sbjct: 256 RLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPILPRFTGATDDAEEAE 315 Query: 307 EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LR +AV GL++RL+ ++ GY +DYR+RL+FEL+VI RM+F GYFLIVADFI Sbjct: 316 RAEAGELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVADFI 375 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 376 KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA Sbjct: 436 DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P L +AI ++ + +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 496 NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP Sbjct: 556 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDLAAIPL 615 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN Sbjct: 616 DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD+Q+ERF+ GA KNG+SK A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY Sbjct: 736 EMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N EK+ F QDA++ I+++ PSV T F+ GDNRIYY+LAA+K Sbjct: 796 PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRQFETGDNRIYYALAALK 855 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + HI+E D PF +EDFC R+D +++NRRVLESL++AGA DCFG R QL Sbjct: 856 GVGESAVDHIVEVRGDTPFAGIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLSA 915 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD I YAQ ++N+ + +IF + +KI L FS +S R E +VLGFY Sbjct: 916 GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLASERLLKEFQVLGFYL 975 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HPLD Y IL+KM ++ + E A I+ +N RLA V+SKQ++KTR G+++G + FS Sbjct: 976 TAHPLDSYSNILQKMRVQTFAEFSAAIKQGASNARLAGTVISKQERKTRTGNKMGIIVFS 1035 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1036 DSSGQFEAVLF 1046 >gi|190891309|ref|YP_001977851.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652] gi|190696588|gb|ACE90673.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652] Length = 1165 Score = 1352 bits (3498), Expect = 0.0, Method: Compositional matrix adjust. Identities = 643/1031 (62%), Positives = 807/1031 (78%), Gaps = 6/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL+VHS+YSLLEGAL L IL K A D QPAIAITDTNNLF ALEFSQKA G+ Sbjct: 16 TPGFIHLRVHSAYSLLEGALPLKKILYKAAGDNQPAIAITDTNNLFVALEFSQKAMDDGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM+D L+ +G + +PSIVLL +T GY+RL++LVSR YL Sbjct: 76 QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q++ I SWL+E GTEGLI LTG +GP+D A + AE RLL K+LFGDRLYV L Sbjct: 136 QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHTAQAEARLLMLKRLFGDRLYVEL 195 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YD+ E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 196 QRHGTYDKPHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R+TPDHYLK+R+EM +F+DLPEALENT+EIARRCSF+L+ PILPRF D + E Sbjct: 256 RLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPILPRFTGATDDAEEAE 315 Query: 307 EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LR +AV GL+ RL+ ++ GY +DYR+RL+FEL+VI RM+F GYFLIVADFI Sbjct: 316 RAEAGELRRQAVEGLDRRLSTLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVADFI 375 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 376 KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA Sbjct: 436 DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P L +AI ++ + +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 496 NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP Sbjct: 556 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDLAAIPL 615 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN Sbjct: 616 DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD+Q+ERF+ GA KNG+SK A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY Sbjct: 736 EMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N EK+ F QDA++ I+++ PSV T F+ GDNRIYY+LAA+K Sbjct: 796 PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRQFETGDNRIYYALAALK 855 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + HI+E D PF +EDFC R+D +++NRRVLESL++AGA DCFG R QL Sbjct: 856 GVGESAVDHIVEVRGDTPFAGIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLSA 915 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD I YAQ ++N+ + +IF + +KI L FS +S R E +VLGFY Sbjct: 916 GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLASERLLKEFQVLGFYL 975 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HPLD Y IL+KM ++ + E A I+ +N RLA V+SKQ++KTR G+++G + FS Sbjct: 976 TAHPLDSYNNILQKMRVQTFAEFSAAIKQGASNARLAGTVISKQERKTRTGNKMGIIVFS 1035 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1036 DSSGQFEAVLF 1046 >gi|116251489|ref|YP_767327.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. viciae 3841] gi|115256137|emb|CAK07218.1| putative DNA polymerase III alpha subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 1165 Score = 1351 bits (3496), Expect = 0.0, Method: Compositional matrix adjust. Identities = 642/1031 (62%), Positives = 808/1031 (78%), Gaps = 6/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL+VHS+YSLLEGAL L IL K D QPAIAITDTNNLF ALEFSQKA G+ Sbjct: 16 TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFVALEFSQKAMEDGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM+D L+ +G + +PSIVLL +T GY+RL++LVSR YL + Sbjct: 76 QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYERLVDLVSRAYLGGESN 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q+V I SWL+E GTEGLI L+G +GP+D A AE RLLT K+LFGDRLYV L Sbjct: 136 QAVHISASWLEEAGTEGLIALSGALTGPVDVAIKEGHPTQAEARLLTLKRLFGDRLYVEL 195 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YD+ E +++ LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 196 QRHGTYDKRHEQKIIGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R+TPDHYLK+R+EMV +F+DLPEALENT+EIA RCSF+L+ PILPRF D + E Sbjct: 256 RLTPDHYLKSRAEMVKLFADLPEALENTIEIATRCSFVLKTRKPILPRFTGATDDAEEAE 315 Query: 307 EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LR +AV GL++RL+ ++ GY +DYR+RLDFEL+VI RM+F GYFLIVADFI Sbjct: 316 RAEASELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLDFELSVIERMRFPGYFLIVADFI 375 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 376 KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA Sbjct: 436 DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P L +AI ++ + +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 496 NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+ G+K+DL+ IP Sbjct: 556 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKLGIKIDLAAIPL 615 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN Sbjct: 616 DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD+Q+ERF+ GA KNG+SK A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY Sbjct: 736 EMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N EK+ F QDA++ I+++ PSV T F+ GDNRIYY+LAA+K Sbjct: 796 PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFETGDNRIYYALAALK 855 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + HI+E DKPF S+EDFC R+D +++NRRVLESL++AGA DCF R QL Sbjct: 856 GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFDMDRAQLAA 915 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD + YAQ ++N+ + +IF + +KI+L FS S R E +VLGFY Sbjct: 916 GLDRVLGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLPSERLLKEFQVLGFYL 975 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HPLD Y IL+KM ++ + E A I+ N RLA V+SKQ++KTR G+++G + FS Sbjct: 976 TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1036 DSSGQFEAVLF 1046 >gi|241204110|ref|YP_002975206.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858000|gb|ACS55667.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1165 Score = 1350 bits (3495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 642/1031 (62%), Positives = 807/1031 (78%), Gaps = 6/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL+VHS+YSLLEGAL L IL K D QPAIAITDTNNLF ALEFSQKA G+ Sbjct: 16 TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFVALEFSQKAMEEGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM D L+ +G + +P+IVLL +T GY+RL++LVSR YL + Sbjct: 76 QPIIGCQVSIDMGDGLETEKRGGQQALVKLPAIVLLAATDAGYERLVDLVSRAYLGGESN 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q+V I SWL+E GTEGLI LTG +GP+D A AE RLLT K+LFGDRLYV L Sbjct: 136 QAVHISASWLEEAGTEGLIALTGALTGPVDVAIKEGHPAQAEARLLTLKRLFGDRLYVEL 195 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YD+ E +++ LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 196 QRHGTYDKRHEQKIIGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R+TPDHYLK+R+EMV +F+DLPEALENT+EIA RCSF+L+ PILPRF D + E Sbjct: 256 RLTPDHYLKSRAEMVKLFADLPEALENTIEIATRCSFVLKTRKPILPRFTGATDDAEEAE 315 Query: 307 EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LR +AV GL++RLA ++ GY +DYR+RLDFEL+VI RM+F GYFLIVADFI Sbjct: 316 RAEASELRRQAVEGLDMRLATLGMSAGYEEKDYRERLDFELSVIERMRFPGYFLIVADFI 375 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 376 KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA Sbjct: 436 DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P L +AI ++ + +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 496 NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+ GVKVDL+ IP Sbjct: 556 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKLGVKVDLAAIPL 615 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN Sbjct: 616 DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD+Q+ERF+ GA +NG+SK A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY Sbjct: 736 EMDQQRERFVVGAVRNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N EK+ F QDA++ I+++ PSV + F+ GDNRIYY+LAA+K Sbjct: 796 PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQSSFRHFETGDNRIYYALAALK 855 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + HI+E DKPF S+EDFC R+D +++NRRVLESL++AGA DCF R +L Sbjct: 856 GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFDMDRAELAA 915 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD + YAQ ++N+ + +IF + +KI+L FS S R E +VLGFY Sbjct: 916 GLDRVLGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLPSERLLKEFQVLGFYL 975 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HPLD Y IL+KM ++ + E A I+ N RLA V+SKQ++KTR G+++G + FS Sbjct: 976 TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1036 DSSGQFEAVLF 1046 >gi|86357261|ref|YP_469153.1| DNA polymerase III subunit alpha [Rhizobium etli CFN 42] gi|86281363|gb|ABC90426.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42] Length = 1165 Score = 1350 bits (3494), Expect = 0.0, Method: Compositional matrix adjust. Identities = 643/1031 (62%), Positives = 809/1031 (78%), Gaps = 6/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL+VHS+YSLLEGAL L IL K D QPAIAITDTNNLF ALEFSQKA G+ Sbjct: 16 TPGFIHLRVHSAYSLLEGALPLKKILYKATGDNQPAIAITDTNNLFVALEFSQKAMDEGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM+D L+ +G + +PSIVLL +T GY+RL++LVSR YL Sbjct: 76 QPIIGCQVSIDMEDGLESEKRGGQQALIKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q+V I SWL+E GTEGLI LTG +GP+D A AE RLLT K+LFGDRLYV L Sbjct: 136 QAVHIRASWLEEAGTEGLIALTGALTGPVDAAVREGHPAQAEARLLTLKRLFGDRLYVEL 195 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YD+ E ++V+LAYTH+LPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 196 QRHGTYDKRHEQKIVRLAYTHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R+TPDHYLK+R+EM +F+DLPEALENT+EIA+RCSF+L+ PILPRF D + E Sbjct: 256 RLTPDHYLKSRAEMARLFADLPEALENTIEIAKRCSFVLKTRKPILPRFTGATDDAEEAE 315 Query: 307 EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LR +AV GL++RLA ++ GY +DYR+RL+FEL+VI RM+F GYFLIV+DFI Sbjct: 316 RAEAGELRRQAVEGLDMRLATLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVSDFI 375 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 376 KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA Sbjct: 436 DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P L +AI ++ + +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 496 NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP Sbjct: 556 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGINVDLAAIPL 615 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN Sbjct: 616 DDKPTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPVYNA 675 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 RKHGEEEVESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD+Q+ERF+ GA KNG+ K A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HY Sbjct: 736 EMDQQRERFVEGAVKNGVKKPQADVIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N EK+ F QDA++ I+++ PSV T F+ GDNRIYY+LAA+K Sbjct: 796 PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFETGDNRIYYALAALK 855 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + HI+E DKPF S+EDFC R+D +++NRRVLESL++AGA DCFG R QL Sbjct: 856 GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLAA 915 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD I YAQ ++N+ + +IF + +KI+L +S +S R E +VLGFY Sbjct: 916 GLDRILGYAQRAQENKLSGQSDIFGSALNSGPEKISLPPYSPWLASERLLKEFQVLGFYL 975 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HPLD Y IL+KM ++ + E A I+ N RLA V+SKQ++KTR G+++G + FS Sbjct: 976 TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1036 DSSGQFEAVLF 1046 >gi|209548886|ref|YP_002280803.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534642|gb|ACI54577.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1165 Score = 1347 bits (3487), Expect = 0.0, Method: Compositional matrix adjust. Identities = 641/1031 (62%), Positives = 804/1031 (77%), Gaps = 6/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL+VHS+YSLLEGAL L IL K D QPAIAITDTNNLF ALEFSQKA G+ Sbjct: 16 TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFIALEFSQKAMDDGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM+D L+ +G + +PSIVLL +T GY+RL+++VSR YL + Sbjct: 76 QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYERLVDVVSRAYLGGESN 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q++ I SWL+E GTEGLI LTG +GP+D A E RLL K+LFGDRLYV L Sbjct: 136 QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIKEGHPAQGEARLLALKRLFGDRLYVEL 195 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YD+ E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 196 QRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R+TPDHYLK+R+EM +F+DLPEALENT+EIA+RCSF+L+ PILPRF D + E Sbjct: 256 RLTPDHYLKSRAEMAKLFADLPEALENTIEIAKRCSFVLKTRKPILPRFTGATDDAEEAE 315 Query: 307 EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LR +AV GL++RLA ++ GY DYR+RLDFEL+VI RM+F GYFLIVADFI Sbjct: 316 RAEASELRRQAVEGLDMRLATLGMSPGYEEMDYRERLDFELSVIERMRFPGYFLIVADFI 375 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 376 KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA Sbjct: 436 DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P L +AI ++ + +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 496 NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP Sbjct: 556 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGINVDLAAIPL 615 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN Sbjct: 616 DDKLTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD+Q+ERF+ GA KNG+SK A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY Sbjct: 736 EMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N EK+ F QDA++ I+++ PSV T F+ GDNRIYY+LAA+K Sbjct: 796 PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFQTGDNRIYYALAALK 855 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + HI+E DKPF +EDFC R+D +++NRRVLESL+FAGA DCFG R QL Sbjct: 856 GVGESAVDHIVEVRGDKPFAGIEDFCLRIDPRQVNRRVLESLIFAGAFDCFGTDRAQLSA 915 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD I YAQ ++N+ + +IF + +KI+L FS +S R E +VLGFY Sbjct: 916 GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLASERLLKEFQVLGFYL 975 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HPLD Y +L+KM ++ + E I+ N RLA V+SKQ++KTR G+++G + FS Sbjct: 976 TAHPLDSYANLLQKMRVQTFAEFSQAIKQGAFNARLAGTVISKQERKTRTGNKMGIIVFS 1035 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1036 DSSGQFEAVLF 1046 >gi|15888619|ref|NP_354300.1| DNA polymerase III subunit alpha [Agrobacterium tumefaciens str. C58] gi|15156343|gb|AAK87085.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58] Length = 1167 Score = 1343 bits (3477), Expect = 0.0, Method: Compositional matrix adjust. Identities = 648/1033 (62%), Positives = 803/1033 (77%), Gaps = 7/1033 (0%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K+P FVHL+VHS+YSLLEGAL L I+ K D QPAIAITDTNNLF ALEFS+KA G Sbjct: 16 KTPGFVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDEG 75 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125 +QPIIGCQL IDMQD + + +P+IVLL + AEGY+RL++LVSR YL +G Sbjct: 76 LQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYERLVDLVSRAYLDGEGG 135 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 SV I +WL+E GLI LTG S GP+D A + A++RLLT K LFGDRLY+ Sbjct: 136 SHSVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGDRLYIE 195 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 LQR GYDR E +++ LAY H++PLVATN + F S+ DYEAHD LMAVAH+ +VS R Sbjct: 196 LQRQSGYDRSHERRLIGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSDDSR 255 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DI 303 R+TPDHYLK+R EM ++F+DLPEALENTVEIA RCS++L+ PILPRF D Sbjct: 256 FRLTPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGPILPRFTGASDDPEAA 315 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ E ELR +AV GL+ RL+ +A GY QDYR+RLDFEL VI+RMKF GYFLIVADF Sbjct: 316 ERAETEELRRQAVEGLDQRLSALGMAPGYTEQDYRERLDFELGVISRMKFPGYFLIVADF 375 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFC Sbjct: 376 IKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 435 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+P Sbjct: 436 QDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 495 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A+P L +AI ++ R +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+L Sbjct: 496 ANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKL 555 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L+ ++DF+A+RG+KVDL+ IP Sbjct: 556 VPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKVDLAAIP 615 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN Sbjct: 616 LEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYN 675 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 ARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 735 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEMD+Q+ERF+ GA KNG+SK A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK H Sbjct: 736 EEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAH 795 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVEFLAASMTL+M N EK+ F QDA + I+++ PSV T F+ G+NRIYYSLAAI Sbjct: 796 YPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQTSFRQFETGENRIYYSLAAI 855 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGVG HI++ +KPF SLEDFC R+D K++NRRVLESL+ AGA DCFG R +L+ Sbjct: 856 KGVGEGAVEHIVQVRGEKPFTSLEDFCLRIDPKQINRRVLESLINAGAFDCFGRDRAELI 915 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 LD I YAQ + NRT ++F GT +K+ L F S + E +VLGFY Sbjct: 916 GGLDRIIGYAQMAQNNRTIGQSDMFGSGGGTGPEKLILPAFQSWLPSEKLIREYQVLGFY 975 Query: 963 FSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019 + HPLD Y+P+L K+ ++ + + S A +G + RLA V KQ++KTR G+++G VT Sbjct: 976 LTAHPLDTYRPLLEKLRVQNFADFSAAVKQGASTVGRLAGTVTGKQERKTRTGNKMGIVT 1035 Query: 1020 FSEPAKEYEANFF 1032 FS+ + +YEA F Sbjct: 1036 FSDASGQYEAVLF 1048 >gi|222085600|ref|YP_002544130.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter K84] gi|221723048|gb|ACM26204.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter K84] Length = 1187 Score = 1342 bits (3473), Expect = 0.0, Method: Compositional matrix adjust. Identities = 637/1034 (61%), Positives = 810/1034 (78%), Gaps = 13/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L IL K A D QPAIA+TDTNNLF ALEFSQKA G+ Sbjct: 39 TPEFVHLRVHSAYSLLEGALPLKKILAKAAGDNQPAIAVTDTNNLFVALEFSQKAMDEGL 98 Query: 68 QPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM+D ++ +G + +PSIVL +T GY+RL++LVSR YL +G Sbjct: 99 QPIIGCQVSIDMEDGVEGEKRGPQQALAKLPSIVLFAATERGYERLVDLVSRAYLGGEGN 158 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q+V I SWL+EIGTEG+I LTG GP+D A + A RLL K+LFGDRLY+ L Sbjct: 159 QAVHITASWLEEIGTEGMIALTGSLGGPVDMALKEGHAPQALSRLLALKRLFGDRLYIEL 218 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YDR E +++ LAY HELPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 219 QRHGTYDRRHEQKMIALAYEHELPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDTRF 278 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-----EKECD 301 R+TPDHYLK+R++M +F++LPEALENTVEIARRCSF+L+ PILPRF E+E D Sbjct: 279 RLTPDHYLKSRADMAKLFANLPEALENTVEIARRCSFVLKTRKPILPRFTGAADDEEEAD 338 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E ELR +A+ GL+ RLA +A GY +DYR+RL+FEL+VI RMKF GYFLIVA Sbjct: 339 ---RAESAELRAQAIEGLDQRLASLGMAPGYVEKDYRERLEFELSVIERMKFPGYFLIVA 395 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDID Sbjct: 396 DFIKWAKRHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDID 455 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN Sbjct: 456 FCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPN 515 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+P L QAI ++ R +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS Sbjct: 516 NPANPTPLHQAIKEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLS 575 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ +DL+ Sbjct: 576 KLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGISIDLAS 635 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI V Sbjct: 636 IPLDDKKTYDMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPV 695 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RK+G+E+I SIHP ID +LKETQGVI+YQEQVMQ+AQ+LSGYSL EAD+LRRAMGKK Sbjct: 696 YNARKHGEEEIESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYSLGEADLLRRAMGKK 755 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 IK EMD+Q+ERF+ GA KNG+SK + IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK Sbjct: 756 IKAEMDQQRERFVDGAVKNGVSKGQSDVIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMK 815 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMTL+M N EK+ F QDA++ I+++ PS+ T F+ G+NRIYY+LA Sbjct: 816 AHYPVEFLAASMTLDMANTEKVNDFRQDAKRLGIEVIAPSIQTSFRRFETGENRIYYALA 875 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 A+KGVG + HI+E D+PF +EDFC R+D K++NRRVLESL+ AGA DCF R Q Sbjct: 876 ALKGVGESAVDHIVEVRGDQPFAGIEDFCLRIDPKQINRRVLESLIAAGAFDCFEIDRAQ 935 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L+ +D I YAQ ++N+ + ++F + +KI+ F+ +S R E +VLG Sbjct: 936 LIGGIDRIMGYAQVAQENKRSGQHDMFG-SAASGPEKISFPPFTPWLASERLLREFQVLG 994 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 FY + HPLD YK +L KM ++ + + A ++ +N RLA V+SKQ++KTR G+++G Sbjct: 995 FYLTAHPLDTYKSVLDKMRVQNFADFSAAVKQGASNGRLAGTVISKQERKTRTGNKMGIF 1054 Query: 1019 TFSEPAKEYEANFF 1032 FS+ + ++EA F Sbjct: 1055 VFSDASGQFEAVLF 1068 >gi|222148298|ref|YP_002549255.1| DNA polymerase III subunit alpha [Agrobacterium vitis S4] gi|221735286|gb|ACM36249.1| DNA polymerase III alpha chain [Agrobacterium vitis S4] Length = 1179 Score = 1338 bits (3463), Expect = 0.0, Method: Compositional matrix adjust. Identities = 644/1030 (62%), Positives = 795/1030 (77%), Gaps = 6/1030 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 P FVHL+VHS+YSLLEGAL L IL K+A+DQQPAIAITDTNNLF ALEFSQKA + G+ Sbjct: 32 GPGFVHLRVHSAYSLLEGALPLKKILSKVASDQQPAIAITDTNNLFIALEFSQKALSDGL 91 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 QPIIGCQL IDM+D +G + P+IVLL + GY+RL++LVSR YL Q Sbjct: 92 QPIIGCQLSIDMEDA-NEEKRGNSSLAKYPAIVLLAADPAGYERLVDLVSRAYLQGDNTQ 150 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 SV I SWL+EIGT+GLI LTG + GP+D A RL T K LFGDRLY+ LQ Sbjct: 151 SVHITASWLEEIGTDGLIALTGATGGPVDLPVKDGHHAQALSRLQTLKSLFGDRLYIELQ 210 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH+GYDR ES+++ LAY H++PLVATN + F S +DY+AHD LMAVAH+ +VS R R Sbjct: 211 RHQGYDRVHESRMIALAYDHDIPLVATNEAFFPSRDDYDAHDALMAVAHNAIVSDDRRFR 270 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305 +TPDHYLK+R EM ++F DLPEALENTVEIA RCSF+L PILPRF D + ++ Sbjct: 271 LTPDHYLKSRKEMQTLFRDLPEALENTVEIASRCSFVLDTRNPILPRFTGGSDDPEEAER 330 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E ELR +A+ GL+ RLA+ +A GY ++YR RLDFEL VI RMKF GYFLIVADFI+ Sbjct: 331 AEAGELRRQAIEGLDDRLAKLGMAPGYDEKEYRDRLDFELGVIERMKFPGYFLIVADFIK 390 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQD Sbjct: 391 WAKSQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQD 450 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVDR+CKL+PN+PA+ Sbjct: 451 RREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDRICKLVPNNPAN 510 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 P L +AI ++ +F+E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LVP Sbjct: 511 PTPLSKAIEEEPKFQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLVP 570 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF R +++DL+ IP D Sbjct: 571 MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFCRLRDIEIDLATIPLD 630 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R Sbjct: 631 DEKTYQMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 690 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+E+I SIHP ID +LKETQGVI+YQEQVMQ+AQ+LSGYSL EAD+LRRAMGKKIKEE Sbjct: 691 KHGEEEIESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYSLGEADLLRRAMGKKIKEE 750 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MDKQ+ RF+ GA KNG+SK A NIF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP Sbjct: 751 MDKQRARFVDGAVKNGVSKPQADNIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 810 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMTL+M N EK+ F QDA + I+++PPSV T F+ G NRIYYSLAA+KG Sbjct: 811 VEFLAASMTLDMANTEKLVDFRQDAGRLGIEVVPPSVQTSFRHFQTGPNRIYYSLAALKG 870 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG HI+ D PF LEDFC R+D K++NRRV ESL+FAGA DCFG R +LL Sbjct: 871 VGDAAVEHIVTVRGDTPFADLEDFCLRIDPKQINRRVFESLIFAGAFDCFGRDRPELLAG 930 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 +D I YAQ ++N + ++F T ++I+ ++ S + E +VLGFY S Sbjct: 931 MDRIIGYAQRAQENAVSGQSDMFGSGGATGPERISFPTYTPWLPSEKLMREFQVLGFYLS 990 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD YKP+L KM ++ + + +R RLA V+SKQ++KTR G+++G VTFS+ Sbjct: 991 AHPLDTYKPLLEKMRVQNFVDFSGAVRQGATAGRLAGTVISKQERKTRTGNKMGIVTFSD 1050 Query: 1023 PAKEYEANFF 1032 ++EA F Sbjct: 1051 ATGQFEAVLF 1060 >gi|150396144|ref|YP_001326611.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419] gi|150027659|gb|ABR59776.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419] Length = 1165 Score = 1335 bits (3454), Expect = 0.0, Method: Compositional matrix adjust. Identities = 642/1030 (62%), Positives = 795/1030 (77%), Gaps = 6/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS+YSLLEGAL L I+ K AD QPAI I DTNNLF+ALEFSQKA G+Q Sbjct: 17 PQFVHLRVHSAYSLLEGALPLKKIIGKAIADDQPAIGIADTNNLFAALEFSQKAAGDGLQ 76 Query: 69 PIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL IDM+D + +G F +PS+VL+ +T +GY RL+ELVSR YL +G Sbjct: 77 PIIGCQLSIDMEDEAEGERRGHAHQFVKLPSLVLIAATDDGYARLVELVSRAYLEGEGHH 136 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 VRI SWL GT GLI LTG +GPID A S +AE RL T +LFGDRLYV LQ Sbjct: 137 QVRISRSWLSAGGTSGLIALTGAGTGPIDMAVKAGSPALAEARLKTLIELFGDRLYVELQ 196 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E++++ LAY ++PLVATN + F S DY+AHD L+AVAH+ +VS R R Sbjct: 197 RHGNYDRSHENRMIDLAYRLDVPLVATNEAFFPSPADYDAHDALIAVAHNAMVSDDSRFR 256 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE- 306 +TPDHYLK+R EM ++F+DLPEALENT+EIARRCSF+L+ +PILPRF D Q E Sbjct: 257 LTPDHYLKSRKEMAALFADLPEALENTIEIARRCSFMLKTRSPILPRFTGASGDPEQAER 316 Query: 307 -EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E ELR +A GLE RLA+ +A GY +DYR+RL FEL VI RMKF GYFLIVADFI+ Sbjct: 317 AEVAELRRQAEEGLEGRLAKLGMAPGYKEEDYRERLAFELGVIERMKFPGYFLIVADFIK 376 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD Sbjct: 377 WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 436 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+ Sbjct: 437 RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 496 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 P L +AI ++ R +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP Sbjct: 497 PTPLSKAIEEEPRLQEEAEKEPVVGRLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 556 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ +DL+ IP D Sbjct: 557 MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGIHIDLASIPLD 616 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI +YN R Sbjct: 617 DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPIYNAR 676 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIKEE Sbjct: 677 KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKEE 736 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MDKQ+ RF+ GA +NG+SK A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP Sbjct: 737 MDKQRARFVDGAVRNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 796 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMTL+M N EKI F QDA + IQ++ PSV T F+ G+ RIYYSLAA+KG Sbjct: 797 VEFLAASMTLDMSNTEKINDFRQDAMRLGIQVIAPSVQTSHRHFETGEKRIYYSLAALKG 856 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG + HI+ D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+ Sbjct: 857 VGESAVDHIVAVREDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELVGG 916 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 LD I +AQ ++N+ + ++F T +KI L ++ +S + E +VLGFY S Sbjct: 917 LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYTPWLASEKLHREFQVLGFYLS 976 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD Y +L KM ++ + + A ++ RLA V SKQ++KTR G+++G V FS+ Sbjct: 977 AHPLDTYNSLLAKMRVQTFADFSAAVKKGATAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1036 Query: 1023 PAKEYEANFF 1032 + ++EA F Sbjct: 1037 ASGQFEAVLF 1046 >gi|227821642|ref|YP_002825612.1| DNA polymerase III subunit alpha [Sinorhizobium fredii NGR234] gi|227340641|gb|ACP24859.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234] Length = 1165 Score = 1329 bits (3439), Expect = 0.0, Method: Compositional matrix adjust. Identities = 647/1030 (62%), Positives = 799/1030 (77%), Gaps = 6/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS++SLLEGAL L I+ K AD+QPAI I DTNNLF+ALEFSQKA G+Q Sbjct: 17 PQFVHLRVHSAFSLLEGALPLKKIIAKAVADEQPAIGIADTNNLFAALEFSQKAADDGLQ 76 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL IDM+D + + +PSIVL+ +T GY RL++LVSR YL +G Q Sbjct: 77 PIIGCQLSIDMEDEAEGERRSHAQQLAKLPSIVLIAATDAGYTRLVDLVSRAYLEGEGHQ 136 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 +VR+ SWL GTEGLI LTG SGP+D A + +AE RL T +LFGDRLYV LQ Sbjct: 137 AVRVTRSWLAAGGTEGLIALTGAGSGPVDLALKAGLAALAEARLKTLVELFGDRLYVELQ 196 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR +E+++V LAY H++PLVATN + F S DY+AHD LMAVAH+ VVS R R Sbjct: 197 RHGSYDRRQENRLVDLAYRHDIPLVATNEAFFPSPADYDAHDALMAVAHNAVVSDDRRFR 256 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE- 306 +T DHYLK+R EM ++F+DLPEALENTVEIARRCSF+L+ PILPRF D ++ E Sbjct: 257 LTSDHYLKSRKEMAALFADLPEALENTVEIARRCSFMLKTRGPILPRFTGASDDPVEAER 316 Query: 307 -EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E ELR +A GLE RL++ +A GY +DYR+RL FEL VI RMKF GYFLIVADFI+ Sbjct: 317 AESAELRRQAEEGLEQRLSRLGMAPGYKEEDYRERLAFELGVIERMKFPGYFLIVADFIK 376 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD Sbjct: 377 WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 436 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+ Sbjct: 437 RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 496 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 P L +AI ++ R +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP Sbjct: 497 PTPLSKAIEEEPRLQEEAEKEPVVGRLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 556 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP D Sbjct: 557 MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGIAVDLASIPLD 616 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R Sbjct: 617 DPKTYEILSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 676 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIKEE Sbjct: 677 KHGEEEIESIHPKIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKEE 736 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MDKQ+ RF+ GA NG+ K A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP Sbjct: 737 MDKQRARFVEGAVGNGVVKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 796 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMTL+M N EKI F QDA + IQ++ PSV T F+ GDNRIYYSLAAIKG Sbjct: 797 VEFLAASMTLDMSNTEKINDFRQDAIRLGIQVIAPSVQTSFRLFETGDNRIYYSLAAIKG 856 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG + HI+ D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+ Sbjct: 857 VGESAVEHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 916 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 LD I +AQ ++N+ + ++F T +KI L ++ +S + E +VLGFY S Sbjct: 917 LDRILGFAQRAQENKLSGQSDMFGAGAATGPEKIALPVYTPWLASEKLHREFQVLGFYLS 976 Query: 965 GHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD Y +L KM ++ + + S A +G + RLA V SKQ++KTR G+++G V FS+ Sbjct: 977 AHPLDTYNKLLAKMRVQTFADFSAAVKKGASAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1036 Query: 1023 PAKEYEANFF 1032 + ++EA F Sbjct: 1037 ASGQFEAVLF 1046 >gi|15965042|ref|NP_385395.1| DNA polymerase III subunit alpha [Sinorhizobium meliloti 1021] gi|307301114|ref|ZP_07580883.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C] gi|15074221|emb|CAC45868.1| Probable DNA polymerase III, alpha chain [Sinorhizobium meliloti 1021] gi|306904069|gb|EFN34655.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C] Length = 1169 Score = 1322 bits (3421), Expect = 0.0, Method: Compositional matrix adjust. Identities = 639/1030 (62%), Positives = 791/1030 (76%), Gaps = 6/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS+YSLLEGAL L I+ K AD QPAI I DTNNLF+ALEFSQKA G+Q Sbjct: 21 PQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQ 80 Query: 69 PIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL IDM+D + +G F +P+IVL+ +T +GY RL+ELVSR YL +G Q Sbjct: 81 PIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQ 140 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI SWL GT GLI LTG +GP+D A S +AE RL +LFGDRLYV LQ Sbjct: 141 QTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVELQ 200 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E++++ LAY ++PLVATN + F S DY+AHD LMAVAH+ +VS R R Sbjct: 201 RHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRFR 260 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305 +TPDHYLK+R EM ++F+DLPEALENT+E+ARRCSF+L+ PILPRF D + ++ Sbjct: 261 LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E ELR +A GLE RLA+ +A GY +DYR+RL FEL VI RMKF GYFLIVADFI+ Sbjct: 321 AEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVADFIK 380 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD Sbjct: 381 WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 440 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+ Sbjct: 441 RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 500 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 P L +AI ++ R RE +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP Sbjct: 501 PTPLSKAIEEEPRLREEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 560 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+ +RG+ +DL+ IP D Sbjct: 561 MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFVGKRGIHIDLASIPLD 620 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R Sbjct: 621 DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 680 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK E Sbjct: 681 KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAE 740 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MDKQ+ RF+ GA KNG+SK A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP Sbjct: 741 MDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 800 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMTL+M N +KI F QDA + IQ++ PSV T F+ GDNRIYYSLAA+KG Sbjct: 801 VEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRHFETGDNRIYYSLAALKG 860 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG + HI+ D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+ Sbjct: 861 VGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 920 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 LD I +AQ ++N+ + ++F T +KI L ++ +S + E +VLGFY S Sbjct: 921 LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYTPWLASEKLHREFQVLGFYLS 980 Query: 965 GHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD Y +L KM ++ + + + RLA V SKQ++KTR G+++G V FS+ Sbjct: 981 AHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1040 Query: 1023 PAKEYEANFF 1032 + ++EA F Sbjct: 1041 ASGQFEAVLF 1050 >gi|325292654|ref|YP_004278518.1| DNA polymerase III subunit alpha [Agrobacterium sp. H13-3] gi|325060507|gb|ADY64198.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3] Length = 1166 Score = 1321 bits (3418), Expect = 0.0, Method: Compositional matrix adjust. Identities = 633/1032 (61%), Positives = 793/1032 (76%), Gaps = 6/1032 (0%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K+P FVHL+VHS+YSLLEGAL L I+ K AD QPAIAITDTNNLF ALEFS+KA G Sbjct: 16 KTPGFVHLRVHSAYSLLEGALPLKKIMSKAVADGQPAIAITDTNNLFVALEFSEKARDEG 75 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQG 125 +QPIIGCQ+ IDMQD + + +P+IVLL + A GY+RL++L+SR YL + G Sbjct: 76 LQPIIGCQVSIDMQDAVDDRRNHNSHLAKLPAIVLLAADAGGYERLVDLISRAYLEGESG 135 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 QSV I +WL+E GLI+LTG S GP+D A + A +RLL K LFGD+LY+ Sbjct: 136 GQSVHITRAWLEEASNAGLIVLTGASGGPVDMALKDGHTAQARERLLALKSLFGDKLYIE 195 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 LQR G+DR E +++ LAY H++PLVATN + F S DYEAHD LMAVAH+ +VS R Sbjct: 196 LQRQSGFDRVHERRMIGLAYEHDIPLVATNEAFFPSRADYEAHDALMAVAHNAIVSDDSR 255 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DI 303 R+TPDHY+K+R EM +F+DLPEALENTVEIA RCS++L+ PILPRF D Sbjct: 256 FRLTPDHYMKSREEMAELFADLPEALENTVEIAMRCSYVLKKRGPILPRFTGASDDPEAA 315 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 Q+ E ELR +AV GL++RLA +A GY Q+YR RLDFEL VI RM F GYFLIVADF Sbjct: 316 QRAEAEELRRQAVEGLDLRLAALGMAPGYAEQEYRDRLDFELGVIERMGFPGYFLIVADF 375 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFC Sbjct: 376 IKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 435 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+P Sbjct: 436 QDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 495 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A+P L +AI ++ R +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+L Sbjct: 496 ANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKL 555 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L+ ++DF+A+RG+KVDL+ IP Sbjct: 556 VPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKVDLAAIP 615 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN Sbjct: 616 LDDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYN 675 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 ARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 735 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEMD+Q+ERF+ GA +N +SK A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK H Sbjct: 736 EEMDQQRERFVDGAIRNSVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAH 795 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVEFLAASMTL+M N EK+ F QDA + I+++ PSV T F+ G+NRIYYSLAAI Sbjct: 796 YPVEFLAASMTLDMANTEKLNDFRQDASRLGIEVVAPSVQTSFRQFETGENRIYYSLAAI 855 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGVG HI+ KPF SLEDFC R+D K++NRRVLESL+ AG DCFG R +++ Sbjct: 856 KGVGEGAVEHIVTVRDGKPFASLEDFCLRIDPKQINRRVLESLINAGGFDCFGRDRAEMI 915 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 LD I Y+Q +++R ++F + +K+ L F +S + E +VLGFY Sbjct: 916 GGLDRIIGYSQRAQESRVTGQSDMFGSGGASGPEKLILPAFQPWLASEKLLREYQVLGFY 975 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020 + HPLD Y+P+L K+ ++ + + A ++ RLA V KQ++KTR G+++G VTF Sbjct: 976 LTAHPLDTYRPVLEKLRVQNFADFSAAVKQGATAGRLAGTVTGKQERKTRTGNKMGIVTF 1035 Query: 1021 SEPAKEYEANFF 1032 S+ + +YEA F Sbjct: 1036 SDASGQYEAVLF 1047 >gi|307317847|ref|ZP_07597285.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83] gi|306896609|gb|EFN27357.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83] Length = 1169 Score = 1321 bits (3418), Expect = 0.0, Method: Compositional matrix adjust. Identities = 638/1030 (61%), Positives = 791/1030 (76%), Gaps = 6/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS+YSLLEGAL L I+ K AD QPAI I DTNNLF+ALEFSQKA G+Q Sbjct: 21 PQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQ 80 Query: 69 PIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL IDM+D + +G F +P+IVL+ +T +GY RL+ELVSR YL +G Q Sbjct: 81 PIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQ 140 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI SWL GT GLI LTG +GP+D A S +AE RL +LFGDRLYV LQ Sbjct: 141 QTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLQALIELFGDRLYVELQ 200 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E++++ LAY ++PLVATN + F S DY+AHD LMAVAH+ +VS R R Sbjct: 201 RHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRFR 260 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305 +TPDHYLK+R EM ++F+DLPEALENT+E+ARRCSF+L+ PILPRF D + ++ Sbjct: 261 LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E ELR +A GLE RLA+ +A GY +DYR+RL FEL VI RMKF GYFLIVADFI+ Sbjct: 321 AEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVADFIK 380 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD Sbjct: 381 WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 440 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+ Sbjct: 441 RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 500 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 P L +AI ++ R +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP Sbjct: 501 PTPLSKAIEEEPRLQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 560 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+ +RG+ +DL+ IP D Sbjct: 561 MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVGKRGIHIDLASIPLD 620 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R Sbjct: 621 DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 680 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK E Sbjct: 681 KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAE 740 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MDKQ+ RF+ GA KNG+SK A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP Sbjct: 741 MDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 800 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMTL+M N +KI F QDA + IQ++ PSV T F+ GDNRIYYSLAA+KG Sbjct: 801 VEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRHFETGDNRIYYSLAALKG 860 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG + HI+ D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+ Sbjct: 861 VGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 920 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 LD I +AQ ++N+ + ++F T +KI L ++ +S + E +VLGFY S Sbjct: 921 LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALSPYTPWLASEKLHREFQVLGFYLS 980 Query: 965 GHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD Y +L KM ++ + + + RLA V SKQ++KTR G+++G V FS+ Sbjct: 981 AHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1040 Query: 1023 PAKEYEANFF 1032 + ++EA F Sbjct: 1041 ASGQFEAVLF 1050 >gi|163759322|ref|ZP_02166408.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43] gi|162283726|gb|EDQ34011.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43] Length = 1189 Score = 1246 bits (3225), Expect = 0.0, Method: Compositional matrix adjust. Identities = 605/1031 (58%), Positives = 775/1031 (75%), Gaps = 8/1031 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHSSYSLLEGAL + ++ + AD+QPA+AITDTNNLF ALEFS KA AGIQ Sbjct: 41 PGFVHLRVHSSYSLLEGALPIKTLIKRALADEQPALAITDTNNLFGALEFSIKAMEAGIQ 100 Query: 69 PIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 P+IGCQLDIDM+D + + +PSIVL STA GY+RL LVSR YL + Sbjct: 101 PLIGCQLDIDMEDGAASERRSHRDQLQRLPSIVLYASTATGYERLTALVSRAYLEGDSVE 160 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I +SWL+E G +GLI LTG GP+D+ + A +RL K +F DR+Y+ LQ Sbjct: 161 RPHILMSWLEE-GADGLIALTGSVKGPVDQCIRESHPDRAAERLNRLKTVFEDRVYIELQ 219 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R +GYDR ES+++ LAY ++PLVATN + F + +D+EAHD LMAVA + V+S RPR Sbjct: 220 RQQGYDRAHESKMIALAYAADVPLVATNEAFFPTPDDFEAHDALMAVAANAVMSDDRRPR 279 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQ 304 ++ D+ LK+R+EM ++F+D+PEAL NT+EIA+RCS I++ PILPRF E++ D Sbjct: 280 LSVDNCLKSRAEMTALFADVPEALRNTIEIAQRCSAIVETRPPILPRFTGGGEEDPDAAL 339 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E ELR ++ GLE RL + +A+GY DYR+RL EL++I MKF GYFLIVADFI Sbjct: 340 AAEAAELRRQSEEGLERRLERIGLAEGYTHDDYRERLKTELDIIENMKFPGYFLIVADFI 399 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP R+SMPDFDIDFCQ Sbjct: 400 KWAKDHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPARVSMPDFDIDFCQ 459 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+V QIITFGSLQA+AALRDVGR L+MPY VDR+CKL+PN+PA Sbjct: 460 DRREEVIRYVQKKYGREQVGQIITFGSLQARAALRDVGRVLEMPYGLVDRICKLVPNNPA 519 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P L +AI ++ RF E +P+V+RLL+I+QKLEGLYRHASTHAAGIVIGDRPLSQLV Sbjct: 520 NPTPLNKAIEEEPRFAEEMEKEPAVERLLDIAQKLEGLYRHASTHAAGIVIGDRPLSQLV 579 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++ F+A+RG+ +DL +P Sbjct: 580 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVGFIAKRGITIDLEGLPL 639 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD IEDIIALV+LYRPGP++NI VYN Sbjct: 640 DDQPTYEMLSRGETVGVFQVESAGMRKALIGMRPDRIEDIIALVALYRPGPMENIPVYNA 699 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+E++ SIHP ID +L ETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKIKE Sbjct: 700 RKHGEEELASIHPKIDGLLAETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIKE 759 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMDKQ+ RF+ GA + +SK A IF+LLAKFA+YGFNKSHAAAY ++SYQTA++K HY Sbjct: 760 EMDKQRARFVEGAVERDVSKPQADMIFDLLAKFANYGFNKSHAAAYGIVSYQTAYLKAHY 819 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N +K+ F QDA++ I++ PPSV T F+ G+NRIYY+LAAIK Sbjct: 820 PVEFLAASMTLDMSNTDKLNDFRQDAKRLGIEVAPPSVQTSFRHFETGENRIYYALAAIK 879 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG HI+E D F SLEDFC R+D +++NRRVLESL+ AGALDCFG R L+ Sbjct: 880 GVGDAAVEHIVEVRGDTEFASLEDFCVRIDPRQVNRRVLESLITAGALDCFGLDRAALVA 939 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD I +AQ ++NR + ++F ++ I L + + + E + LGFY Sbjct: 940 GLDRILGFAQRAQENRISGQSDMFGAGASESAETIHLPDATPWLPAEKLHREYQALGFYL 999 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HPLD Y +L KM ++ + + +++ RLA V SKQ++KT+ G+++G V FS Sbjct: 1000 SAHPLDSYADLLNKMRVQNWADFQVSVKAGATAGRLAGTVTSKQERKTKTGNKMGIVAFS 1059 Query: 1022 EPAKEYEANFF 1032 + + +YEA F Sbjct: 1060 DSSGQYEAVLF 1070 >gi|153009730|ref|YP_001370945.1| DNA polymerase III subunit alpha [Ochrobactrum anthropi ATCC 49188] gi|151561618|gb|ABS15116.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188] Length = 1163 Score = 1239 bits (3207), Expect = 0.0, Method: Compositional matrix adjust. Identities = 602/1034 (58%), Positives = 780/1034 (75%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPRFVHLRVHSAYSLLEGALPLGKIIKQAIADEAPAIAVTDTNNLFGALEFAQKASKDGL 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQ+DI D DN + N+ + P +VLL +T EGY ++ LVSR +L Sbjct: 76 QPIIGCQVDIAFGDHNDNGRSVNR-RVALDLAP-VVLLAATEEGYANIVRLVSRAFLETP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V + SWL + ++ +I+L+GG+ GPI RAF + AE RL ++ FGDRLYV Sbjct: 134 AGDPVHVEASWLPPL-SKDVIVLSGGALGPIGRAFAADRPDRAEARLGFLREAFGDRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GY+R E++ V LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYNRALEAKTVALAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH++K+R+EM ++F+DLPEAL+NTVEIA RCS+ Q APILPRF E DD + Sbjct: 253 RRRLTPDHHMKSRAEMAALFADLPEALDNTVEIAERCSWYTQTRAPILPRFT-GESDDAE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 +EE +EL +A GL++RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQEEADELARQAREGLKMRLETVGLAEGYTTEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQGKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIDTEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++ +A++GV++DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLETAVKLVARKGVEIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD IEDIIALV+LYRPGP++NI Sbjct: 612 VPLDDELTYEMLSRGETVGVFQVESAGMRKALLGMRPDRIEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAIEGGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEF+AASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFIAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVMTSFRPFEVGEKQIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+KPF+SLEDFC RVD + +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKPFESLEDFCERVDPRIVNRRVLESLINAGAMDCFGRERPA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + + S E + +G Sbjct: 912 MSAGMDRIMGFAQRTQENAASGQSDIFGL-SGAPKETLILPQAAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG N RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGANAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|163843098|ref|YP_001627502.1| DNA polymerase III subunit alpha [Brucella suis ATCC 23445] gi|163673821|gb|ABY37932.1| DNA polymerase III, alpha subunit [Brucella suis ATCC 23445] Length = 1163 Score = 1224 bits (3167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 599/1034 (57%), Positives = 769/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF+ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFAALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|225852339|ref|YP_002732572.1| DNA polymerase III subunit alpha [Brucella melitensis ATCC 23457] gi|256264162|ref|ZP_05466694.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str. 63/9] gi|225640704|gb|ACO00618.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457] gi|263094380|gb|EEZ18225.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str. 63/9] Length = 1163 Score = 1224 bits (3166), Expect = 0.0, Method: Compositional matrix adjust. Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAALF 1044 >gi|225627320|ref|ZP_03785357.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo] gi|225617325|gb|EEH14370.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo] Length = 1190 Score = 1224 bits (3166), Expect = 0.0, Method: Compositional matrix adjust. Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 43 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 102 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 103 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 160 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 161 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 219 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 220 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 279 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 280 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 338 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 339 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 398 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 399 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 458 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 459 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 518 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 519 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 578 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 579 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 638 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 639 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 698 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 699 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 758 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 759 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 818 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 819 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 878 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 879 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 938 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 939 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 997 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 998 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1057 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1058 QLSDASGQFEAVLF 1071 >gi|161618789|ref|YP_001592676.1| DNA polymerase III subunit alpha [Brucella canis ATCC 23365] gi|254704138|ref|ZP_05165966.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686] gi|256044502|ref|ZP_05447406.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|256060935|ref|ZP_05451093.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33] gi|256113358|ref|ZP_05454216.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|260563856|ref|ZP_05834342.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|260566613|ref|ZP_05837083.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40] gi|261324935|ref|ZP_05964132.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33] gi|261754804|ref|ZP_05998513.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686] gi|265990926|ref|ZP_06103483.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|265994764|ref|ZP_06107321.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|161335600|gb|ABX61905.1| DNA polymerase III, alpha subunit [Brucella canis ATCC 23365] gi|260153872|gb|EEW88964.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|260156131|gb|EEW91211.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40] gi|261300915|gb|EEY04412.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33] gi|261744557|gb|EEY32483.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686] gi|262765877|gb|EEZ11666.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|263001710|gb|EEZ14285.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|326408847|gb|ADZ65912.1| DNA polymerase III subunit alpha [Brucella melitensis M28] gi|326538562|gb|ADZ86777.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90] Length = 1163 Score = 1223 bits (3164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|306843761|ref|ZP_07476360.1| DNA polymerase III, alpha subunit [Brucella sp. BO1] gi|306275952|gb|EFM57665.1| DNA polymerase III, alpha subunit [Brucella sp. BO1] Length = 1163 Score = 1223 bits (3164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 600/1034 (58%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRAVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+I+ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDIALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|254706961|ref|ZP_05168789.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10] gi|254709931|ref|ZP_05171742.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94] gi|256031424|ref|ZP_05445038.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1] gi|256159545|ref|ZP_05457313.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1] gi|256254832|ref|ZP_05460368.1| DNA polymerase III subunit alpha [Brucella ceti B1/94] gi|261222013|ref|ZP_05936294.1| DNA polymerase III subunit alpha [Brucella ceti B1/94] gi|261314424|ref|ZP_05953621.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10] gi|261317477|ref|ZP_05956674.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94] gi|265988513|ref|ZP_06101070.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1] gi|265997977|ref|ZP_06110534.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1] gi|260920597|gb|EEX87250.1| DNA polymerase III subunit alpha [Brucella ceti B1/94] gi|261296700|gb|EEY00197.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94] gi|261303450|gb|EEY06947.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10] gi|262552445|gb|EEZ08435.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1] gi|264660710|gb|EEZ30971.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1] Length = 1163 Score = 1223 bits (3164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|148559880|ref|YP_001258802.1| DNA polymerase III subunit alpha [Brucella ovis ATCC 25840] gi|148371137|gb|ABQ61116.1| DNA polymerase III, alpha subunit [Brucella ovis ATCC 25840] Length = 1163 Score = 1222 bits (3163), Expect = 0.0, Method: Compositional matrix adjust. Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRIVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGGDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|260168558|ref|ZP_05755369.1| DNA polymerase III subunit alpha [Brucella sp. F5/99] gi|261758031|ref|ZP_06001740.1| DNA polymerase III subunit alpha [Brucella sp. F5/99] gi|261738015|gb|EEY26011.1| DNA polymerase III subunit alpha [Brucella sp. F5/99] Length = 1163 Score = 1222 bits (3163), Expect = 0.0, Method: Compositional matrix adjust. Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|17987420|ref|NP_540054.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|17983111|gb|AAL52318.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M] Length = 1178 Score = 1222 bits (3163), Expect = 0.0, Method: Compositional matrix adjust. Identities = 599/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 31 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 90 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 91 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 148 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 149 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 207 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 208 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 267 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 268 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 326 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 327 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 386 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 387 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 446 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 447 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 506 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 507 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 566 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 567 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 626 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 627 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 686 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 687 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 746 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 747 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 806 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 807 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 866 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 867 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 926 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 927 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 985 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 986 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1045 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1046 QLSDASGQFEAVLF 1059 >gi|254718932|ref|ZP_05180743.1| DNA polymerase III subunit alpha [Brucella sp. 83/13] gi|265983919|ref|ZP_06096654.1| DNA polymerase III subunit alpha [Brucella sp. 83/13] gi|306838837|ref|ZP_07471668.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653] gi|264662511|gb|EEZ32772.1| DNA polymerase III subunit alpha [Brucella sp. 83/13] gi|306406121|gb|EFM62369.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653] Length = 1163 Score = 1222 bits (3162), Expect = 0.0, Method: Compositional matrix adjust. Identities = 598/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A R+ K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARMAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AALQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPKETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|256369256|ref|YP_003106764.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915] gi|255999416|gb|ACU47815.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915] Length = 1163 Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 599/1034 (57%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|254713932|ref|ZP_05175743.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1] gi|254717010|ref|ZP_05178821.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1] gi|261218817|ref|ZP_05933098.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1] gi|261321684|ref|ZP_05960881.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1] gi|260923906|gb|EEX90474.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1] gi|261294374|gb|EEX97870.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1] Length = 1163 Score = 1221 bits (3160), Expect = 0.0, Method: Compositional matrix adjust. Identities = 598/1034 (57%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKG G HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGAGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|23501712|ref|NP_697839.1| DNA polymerase III subunit alpha [Brucella suis 1330] gi|23347636|gb|AAN29754.1| DNA polymerase III, alpha subunit [Brucella suis 1330] Length = 1163 Score = 1221 bits (3160), Expect = 0.0, Method: Compositional matrix adjust. Identities = 598/1034 (57%), Positives = 768/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA++K Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYIK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|306841939|ref|ZP_07474617.1| DNA polymerase III, alpha subunit [Brucella sp. BO2] gi|306287972|gb|EFM59380.1| DNA polymerase III, alpha subunit [Brucella sp. BO2] Length = 1163 Score = 1221 bits (3159), Expect = 0.0, Method: Compositional matrix adjust. Identities = 598/1034 (57%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A R+ K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARMAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRAVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPKETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|294852181|ref|ZP_06792854.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026] gi|294820770|gb|EFG37769.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026] Length = 1188 Score = 1220 bits (3157), Expect = 0.0, Method: Compositional matrix adjust. Identities = 598/1034 (57%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 41 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 100 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 101 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 158 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 159 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 217 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 218 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 277 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 278 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 336 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 337 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 396 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 397 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 456 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 457 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 516 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 517 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 576 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLK LT+LQ ++ +A++G+ +DLS Sbjct: 577 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKMLTVLQTAVKLVARKGIDIDLSH 636 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 637 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 696 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 697 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 756 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 757 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 816 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 817 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 876 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 877 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 936 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 937 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 995 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 996 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1055 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1056 QLSDASGQFEAVLF 1069 >gi|254701591|ref|ZP_05163419.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513] gi|261752144|ref|ZP_05995853.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513] gi|261741897|gb|EEY29823.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513] Length = 1163 Score = 1219 bits (3153), Expect = 0.0, Method: Compositional matrix adjust. Identities = 597/1034 (57%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPR + E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPR-LTGESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTIT +DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITGVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|254693562|ref|ZP_05155390.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|261213827|ref|ZP_05928108.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|260915434|gb|EEX82295.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya] Length = 1163 Score = 1219 bits (3153), Expect = 0.0, Method: Compositional matrix adjust. Identities = 597/1034 (57%), Positives = 767/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPE+LENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPESLENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R + V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKESVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|237815260|ref|ZP_04594258.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A] gi|237790097|gb|EEP64307.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A] Length = 1190 Score = 1218 bits (3152), Expect = 0.0, Method: Compositional matrix adjust. Identities = 597/1034 (57%), Positives = 766/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 43 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 102 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 103 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 160 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 161 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 219 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + F ED+EAHD L+A+A ++S D Sbjct: 220 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 279 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 280 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 338 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 339 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 398 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 399 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 458 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 459 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 518 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 519 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 578 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 579 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 638 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 639 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 698 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 699 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 758 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 759 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 818 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 819 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 878 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIK VG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 879 AIKSVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 938 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 939 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 997 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 998 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1057 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1058 QLSDASGQFEAVLF 1071 >gi|62289774|ref|YP_221567.1| DNA polymerase III subunit alpha [Brucella abortus bv. 1 str. 9-941] gi|82699702|ref|YP_414276.1| DNA polymerase III subunit alpha [Brucella melitensis biovar Abortus 2308] gi|189024017|ref|YP_001934785.1| DNA polymerase III subunit alpha [Brucella abortus S19] gi|254697213|ref|ZP_05159041.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|254730110|ref|ZP_05188688.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292] gi|260545478|ref|ZP_05821219.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038] gi|260757800|ref|ZP_05870148.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292] gi|260761623|ref|ZP_05873966.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|62195906|gb|AAX74206.1| DnaE-2, DNA polymerase III, alpha subunit [Brucella abortus bv. 1 str. 9-941] gi|82615803|emb|CAJ10801.1| Phosphoesterase PHP, N-terminal:PHP domain C-terminal region:OB-fold nucleic acid binding domain:DNA polymerase III alpha sub [Brucella melitensis biovar Abortus 2308] gi|189019589|gb|ACD72311.1| DNA polymerase III subunit alpha [Brucella abortus S19] gi|260096885|gb|EEW80760.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038] gi|260668118|gb|EEX55058.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292] gi|260672055|gb|EEX58876.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str. 86/8/59] Length = 1163 Score = 1218 bits (3152), Expect = 0.0, Method: Compositional matrix adjust. Identities = 597/1034 (57%), Positives = 766/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + F ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIK VG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKSVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|254689079|ref|ZP_05152333.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870] gi|256257328|ref|ZP_05462864.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68] gi|260754577|ref|ZP_05866925.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870] gi|260883604|ref|ZP_05895218.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68] gi|297248177|ref|ZP_06931895.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196] gi|260674685|gb|EEX61506.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870] gi|260873132|gb|EEX80201.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68] gi|297175346|gb|EFH34693.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196] Length = 1163 Score = 1217 bits (3150), Expect = 0.0, Method: Compositional matrix adjust. Identities = 597/1034 (57%), Positives = 766/1034 (74%), Gaps = 14/1034 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKDGV 75 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 QPIIGCQLD+ D DN + N+ K P +VL+ +T GY ++ LVSR +L Sbjct: 76 QPIIGCQLDVAFGDHNDNSRSVNR-KLALDLAP-LVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + F ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF E DD + Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFT-GESDDPE 311 Query: 305 ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVA Sbjct: 312 AAVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVA 371 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDID Sbjct: 372 DFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDID 431 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P Sbjct: 432 FCQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQ 491 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PVSL QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS Sbjct: 492 NPANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLS 551 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVPMYRD R D+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS Sbjct: 552 ELVPMYRDPRFDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSH 611 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Sbjct: 612 LPLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPT 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 672 YNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 731 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 732 IREEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMK 791 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLA Sbjct: 792 AHYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLA 851 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R Sbjct: 852 AIKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAA 911 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +D I +AQ ++N + +IF G + + L + S E + +G Sbjct: 912 MCAGMDRILGFAQRTQENAVSGQSDIFGL-SGAPRETLILPPTAPWLPSEMLHREFQAVG 970 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWV 1018 FY S HPLD Y+ +L +M ++ + + S A RG + RLA V ++Q++KTR G+++G V Sbjct: 971 FYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIV 1030 Query: 1019 TFSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1031 QLSDASGQFEAVLF 1044 >gi|13471011|ref|NP_102580.1| DNA polymerase III subunit alpha [Mesorhizobium loti MAFF303099] gi|14021755|dbj|BAB48366.1| DNA polymerase III alpha subunit [Mesorhizobium loti MAFF303099] Length = 1175 Score = 1213 bits (3138), Expect = 0.0, Method: Compositional matrix adjust. Identities = 596/1029 (57%), Positives = 757/1029 (73%), Gaps = 8/1029 (0%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+YSLLEGAL L I+ D+ PAIA+TDTNNLF ALEF+QKA GIQPI Sbjct: 29 FVHLRVHSAYSLLEGALQLGKIVGHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88 Query: 71 IGCQLDIDMQ-DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IGCQ+ + +N + P + +VLL +T GY L+ LVSR+YL ++V Sbjct: 89 IGCQIALAFSGENSDGQRDRRRQGPEMRPVVLLAATEAGYSNLVRLVSRVYLETPPGEAV 148 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L E +GLI L+GG GPI A + +AE RLLT K LFGDRLYV L R Sbjct: 149 HLTTEML-EGKADGLICLSGGPRGPIGNALKEDRRDLAEVRLLTLKTLFGDRLYVELDRV 207 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 GYDR E Q + LAY HELPLVATN + F S +DYEAHD L+A+A +VV+ R R++ Sbjct: 208 AGYDRVIEHQTIDLAYAHELPLVATNEAFFSSRDDYEAHDALIAIAEGSVVAVDTRRRLS 267 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 PD++L++++EM +F+DLPEA++NTVEIA RCS+ + +PILPRF + D E+ Sbjct: 268 PDNFLRSQAEMAQLFADLPEAIDNTVEIALRCSYYPKTRSPILPRFTGGDASDKDAAEKA 327 Query: 310 E---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E L +A GL+ RLA GY + YR+RL+FEL +I +MKF GYFLIVADFI+W Sbjct: 328 EAAELARQAREGLDARLALHGPTPGYTVEQYRERLEFELGIIEKMKFPGYFLIVADFIKW 387 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR Sbjct: 388 AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P Sbjct: 448 REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V L AIA++ RF E +P V LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM Sbjct: 508 VKLADAIANEPRFAEEAEKEPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++ + +RG+ +DL+ IP DD Sbjct: 568 YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIDIDLATIPLDD 627 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 ETY +L+ +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN RK Sbjct: 628 PETYAMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM Sbjct: 688 HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 DKQ+ERF+SGA + G+SK A IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV Sbjct: 748 DKQRERFVSGAVERGVSKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMTL+M N +K+ F QDA + I+++ PSV T F+VG+NRIYYS+AA+KGV Sbjct: 808 EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVMTSFRPFEVGENRIYYSMAALKGV 867 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G HI+ +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R Q++ + Sbjct: 868 GDAAVEHIVAVRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRAQMMAGV 927 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + + A ++N + +IF G S + L ++ R E +V+GFY S Sbjct: 928 ERMMGLASLAQQNAVSGQADIFGASLGAQSQALNLPATDPWLAADRLHREFQVVGFYLSA 987 Query: 966 HPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD YK L+KM ++ + E S A RG + RLA V SKQ++KTR G+++G V FS+ Sbjct: 988 HPLDEYKAALQKMRVQNWAEFSAAVKRGASAGRLAGTVTSKQERKTRTGNKMGVVAFSDT 1047 Query: 1024 AKEYEANFF 1032 + +YEA F Sbjct: 1048 SGQYEAVLF 1056 >gi|121602736|ref|YP_989159.1| DNA polymerase III subunit alpha [Bartonella bacilliformis KC583] gi|120614913|gb|ABM45514.1| DNA polymerase III, alpha subunit [Bartonella bacilliformis KC583] Length = 1161 Score = 1211 bits (3132), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/1029 (57%), Positives = 760/1029 (73%), Gaps = 7/1029 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS+YSLLEGA+ + I+ +D PAIAITDTNNLF ALEFSQ A GIQ Sbjct: 16 PRFIHLRVHSAYSLLEGAIKIPQIVQHAVSDNAPAIAITDTNNLFGALEFSQYCFAEGIQ 75 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQ+ ID D + K +P+ PS+VL ++ GY L+ LVSR YL + Sbjct: 76 PIIGCQIAIDFGDKDDHSRLAKYHYPSDFPSVVLFAASKTGYACLVRLVSRAYLDEHNTN 135 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL +EG+I LTGGS GPI+ A + + A +RL+ K++FGDRLY+ LQ Sbjct: 136 FPHIKADWLLS-QSEGIIALTGGSGGPINLALAEDKKEWAIERLMDLKRIFGDRLYIELQ 194 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E++++ LAY H++PLVATN + FL+++ YEAHD LMAVA VVS +R R Sbjct: 195 RHGSYDRKVEAELIDLAYVHQIPLVATNEAFFLNKKGYEAHDALMAVAEGQVVSNPNRKR 254 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQKE 306 VTPDHYLK++ EMV++FSDLPEALEN+VEIA RC + +PILPRF E+ D + E Sbjct: 255 VTPDHYLKSQDEMVTLFSDLPEALENSVEIALRCHAFTPMRSPILPRFTERSVDSNAALE 314 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ EL N+A GL++RL +A+GY DY QRLD+E+ VI RM+FSGYFLIV+DFI+W Sbjct: 315 EDKELINQAKDGLKIRLETIGLAEGYTLADYEQRLDYEIAVITRMQFSGYFLIVSDFIKW 374 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQDR Sbjct: 375 AKLHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQDR 434 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+ P + Sbjct: 435 REEVIHYVQKKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVSATPGNN 494 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + L QAI D+ +F E +P + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPM Sbjct: 495 IELAQAIKDEPKFAEEAKKEPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPM 554 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++GVK+DLS I +D Sbjct: 555 YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGVKIDLSCISLND 614 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 ETY +L T+G+FQ+ES GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN RK Sbjct: 615 EETYAMLARGNTVGVFQVESPGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNARK 674 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+EKI SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI +EM Sbjct: 675 HGQEKITSIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIHKEM 734 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 KQ+ RF+SGA GI K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK HYPV Sbjct: 735 QKQRTRFVSGAVDRGIDKDQADMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAHYPV 794 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMT +M N +K+ F ++A + IQ++ P V T F++G+N IYYSL+AIKGV Sbjct: 795 EFLAASMTYDMMNADKLNDFRREALRLEIQVIAPCVQTSHRIFEIGENCIYYSLSAIKGV 854 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G + HI+ +KPF LEDFC R+D + +N+R +ESL++AGA DCFG +R LL SL Sbjct: 855 GDSVVDHIVACRGNKPFKDLEDFCGRIDPRVINKRAMESLIYAGAFDCFGIAREVLLASL 914 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + + A + N ++ +IF G + L + + + + + +E +V+GFYFS Sbjct: 915 ETLNARAIRIFDNNSSGQTDIFGMVDGP-KEPFILSQATPWSLAEKLHHEFQVIGFYFSA 973 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD Y+ IL K ++ + ++G RLA VV+KQ +KT+ G +IG + FS+ Sbjct: 974 HPLDEYQTILAKKRVQTWNNFSNAVKGGATAARLAGTVVTKQIRKTKSGKKIGIIQFSDT 1033 Query: 1024 AKEYEANFF 1032 + +YE F Sbjct: 1034 SGQYETVMF 1042 >gi|319783852|ref|YP_004143328.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169740|gb|ADV13278.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1175 Score = 1203 bits (3112), Expect = 0.0, Method: Compositional matrix adjust. Identities = 586/1029 (56%), Positives = 755/1029 (73%), Gaps = 8/1029 (0%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+YSLLEGAL + ++ D+ PAIA+TDTNNLF ALEF+QKA GIQPI Sbjct: 29 FVHLRVHSAYSLLEGALQIGKVVAHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88 Query: 71 IGCQLDIDMQ-DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IGCQ + +N + P + +VLL +T GY L+ LVSR+YL ++V Sbjct: 89 IGCQTALAFSGENSDGQRDRRRQGPDMRPVVLLAATEAGYSNLVRLVSRVYLETPPGEAV 148 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + + E +GLI L+GG GPI A + +AE RLLT K +FGDRLYV L R Sbjct: 149 HLT-TEMMEGYCDGLICLSGGPRGPIGTALKEDRRDLAEARLLTLKDMFGDRLYVELDRV 207 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 GYDR E + LAY HELPLVATN + F S +DY+AHD L+A+A +VV+ +R R++ Sbjct: 208 SGYDRVIEKSSIDLAYAHELPLVATNEAFFSSRDDYDAHDALIAIAEGSVVAADNRRRLS 267 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD---IQKE 306 PD++L+++++M +F+DLPEA++NTVEIA RCS+ + PILPRF + D + Sbjct: 268 PDNFLRSQADMARLFADLPEAIDNTVEIALRCSYYPKNRNPILPRFTGGDVADNDAAVQA 327 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E +EL +A GL+ RLA GY + YR+RL+FEL +I +MKF GYFLIVADFI+W Sbjct: 328 EADELARQAHEGLDARLAMHGPTAGYTVEQYRERLNFELGIITKMKFPGYFLIVADFIKW 387 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR Sbjct: 388 AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P Sbjct: 448 REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V L AIA++ RF E +P V LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM Sbjct: 508 VKLADAIANEPRFAEEAEREPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++ + +RG+++DL+ IP DD Sbjct: 568 YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIEIDLATIPLDD 627 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 ETY +L+ +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN RK Sbjct: 628 PETYAMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM Sbjct: 688 HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 DKQ+ERF+SGA + G+ K A IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV Sbjct: 748 DKQRERFVSGAVERGVGKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMTL+M N +K+ F QDA + I+++ PSV + F+VG+NRIYYSLAA+KGV Sbjct: 808 EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVTSSFRPFEVGENRIYYSLAALKGV 867 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G HI+ +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R ++ + Sbjct: 868 GDAAVEHIVAQRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRASMMAGV 927 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + + A ++N + +IF G S + L ++ R E +V+GFY S Sbjct: 928 ERMMGLASLAQQNAVSGQHDIFGASLGAQSQALNLPATEPWLAADRLHREFQVVGFYLSA 987 Query: 966 HPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD YK L+KM ++ + E S A RG RLA V SKQ++KTR G+++G + FS+ Sbjct: 988 HPLDEYKAALQKMRVQTWAEFSAAVKRGAAAGRLAGTVTSKQERKTRTGNKMGVIAFSDT 1047 Query: 1024 AKEYEANFF 1032 + +YEA F Sbjct: 1048 SGQYEAVLF 1056 >gi|260463915|ref|ZP_05812111.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum WSM2075] gi|259030290|gb|EEW31570.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum WSM2075] Length = 1175 Score = 1200 bits (3105), Expect = 0.0, Method: Compositional matrix adjust. Identities = 589/1029 (57%), Positives = 754/1029 (73%), Gaps = 8/1029 (0%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+YSLLEGAL + I+ D+ PAIA+TDTNNLF ALEF+QKA GIQPI Sbjct: 29 FVHLRVHSAYSLLEGALQIGKIVGHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88 Query: 71 IGCQLDIDMQ-DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IGCQ+ + +N + P + +VLL +T GY L+ LVS +YL ++V Sbjct: 89 IGCQVALAFSGENSDGQRDRRRQGPEMRPVVLLAATEAGYSNLVRLVSGVYLETPPGEAV 148 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L T+GLI L+GG GPI A + +AE RLLT K LFGDRLYV L R Sbjct: 149 HLTTETLAG-QTDGLICLSGGPRGPIGNALKEDRRDLAETRLLTLKTLFGDRLYVELDRV 207 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 GYDR E ++LAY HELPLVATN + F S +DYEAHD L+A+A +VV+ R R++ Sbjct: 208 AGYDRVIEHSTIELAYAHELPLVATNEAFFSSRDDYEAHDALIAIAEGSVVAVDTRRRLS 267 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 PD++L+++++M +F+DLPEA++NT+EIA RCS+ + +PILPRF + D E+ Sbjct: 268 PDNFLRSQADMAKLFADLPEAIDNTIEIALRCSYYPKTRSPILPRFTGGDTTDKDAAEKA 327 Query: 310 E---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E L +A GL+ RLA GY + YR+RL+FEL +I +MKF GYFLIVADFI+W Sbjct: 328 EAEELARQAREGLDARLALHGPTPGYTVEQYRERLEFELGIIEKMKFPGYFLIVADFIKW 387 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR Sbjct: 388 AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P Sbjct: 448 REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V L AIA++ RF E +P V LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM Sbjct: 508 VKLADAIANEPRFAEEAEKEPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++ + +RG+ +DL+ IP DD Sbjct: 568 YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIDIDLATIPLDD 627 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY +L+ +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN RK Sbjct: 628 PDTYSMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM Sbjct: 688 HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 DKQ+ERF+SGA + G++K A IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV Sbjct: 748 DKQRERFVSGAVERGVAKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMTL+M N +K+ F QDA + I+++ PSV T F+VG+NRIYYS+AA+KGV Sbjct: 808 EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVMTSFRAFEVGENRIYYSMAALKGV 867 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G HI+ +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R +L + Sbjct: 868 GDAAVEHIVAVRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRAAMLAGV 927 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + + A ++N + +IF G S + L ++ R E +V+GFY S Sbjct: 928 ERMMGLASLAQQNAVSGQADIFGASLGAQSQALNLPATDPWLAADRLHREFQVVGFYLSA 987 Query: 966 HPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD YK L+KM ++ + E S A RG RLA V SKQ++KTR G+++G V FS+ Sbjct: 988 HPLDEYKAALQKMRVQNWAEFSAAVKRGATAGRLAGTVTSKQERKTRTGNKMGVVAFSDT 1047 Query: 1024 AKEYEANFF 1032 + +YEA F Sbjct: 1048 SGQYEAVLF 1056 >gi|110633608|ref|YP_673816.1| DNA polymerase III subunit alpha [Mesorhizobium sp. BNC1] gi|110284592|gb|ABG62651.1| DNA polymerase III, alpha subunit [Chelativorans sp. BNC1] Length = 1172 Score = 1199 bits (3102), Expect = 0.0, Method: Compositional matrix adjust. Identities = 588/1031 (57%), Positives = 763/1031 (74%), Gaps = 10/1031 (0%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F+HL+VHS+YSLLEGAL L I+ D+ PAIA DTNNLF ALEF+QKA GIQP Sbjct: 25 NFIHLRVHSAYSLLEGALPLGKIIGHALKDEAPAIATADTNNLFGALEFAQKAVKDGIQP 84 Query: 70 IIGCQLDIDMQDNLKMTNQG--KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IIGCQLD+ D + + F +VL+ +T GY L+ L+SR YL ++ + Sbjct: 85 IIGCQLDVAFDDAFAEARRAASRKSFADYDPLVLIAATEAGYANLVRLMSRAYLDNEAGE 144 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WLQE +EG+I LTGG GPI + +++AE RLL ++ +GDRLYV L+ Sbjct: 145 PPHVAADWLQE-HSEGIICLTGGPRGPIGAPLKADRAELAEARLLLLRETYGDRLYVELE 203 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R +GYDR E+ V LAY H+LPLVATN + F + +D++AHD L+A+A +V++ DR R Sbjct: 204 RLQGYDRNLEAAAVNLAYRHDLPLVATNEAFFPTRDDFDAHDALIAIAEGSVIASDDRRR 263 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD---IQ 304 +TPD+YLK ++EM ++F+DLPEAL+NT+E+ARRCS+ + PILPRF E D Sbjct: 264 LTPDNYLKTQAEMAALFADLPEALDNTLEVARRCSYYPKTRKPILPRFTGDEAGDEAAAL 323 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E +ELR +A GL+ RLA IA+G+ ++Y RL++EL VI RMKF GYFLIVADFI Sbjct: 324 QAEADELRRQAREGLDKRLAIQGIAEGHSEEEYAARLEYELGVIERMKFPGYFLIVADFI 383 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK ++IPVGPGRGSGAGS+ AYALTITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQ Sbjct: 384 KWAKAHDIPVGPGRGSGAGSLVAYALTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQ 443 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVDRLCK++P++PA Sbjct: 444 DRREEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDRLCKMVPSNPA 503 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P L +AI D+ RF E +P V LLEI+QKLEGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 504 NPTPLGKAIEDEPRFAEEVEKEPIVGTLLEIAQKLEGLYRHASTHAAGIVIGDRPLSELV 563 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+K++ + +RG+++DLS IP Sbjct: 564 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLEKAVHLIRRRGIEIDLSKIPL 623 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI YN Sbjct: 624 DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDRVEDIIALVALYRPGPMENIPTYNA 683 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ L+GY+L EAD+LRRAMGKKI+ Sbjct: 684 RKHGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYTLGEADLLRRAMGKKIRA 743 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMDKQ+ RF+ GA + G++K A IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HY Sbjct: 744 EMDKQRVRFVEGAVERGVTKQQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHY 803 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMT +M N +K+ F +DA + I+++PPSV T DF+VG+NRI+YSLAAIK Sbjct: 804 PVEFLAASMTYDMANTDKLNDFRRDAIRLGIEVVPPSVLTSYRDFEVGENRIFYSLAAIK 863 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G G HI+ +KPF+S+EDFC+RVD K + +RVLESL+ AGA DCFG R L Sbjct: 864 GAGDAAVEHIVAKRKEKPFESIEDFCARVDPKIVGKRVLESLICAGAFDCFGLDRAALFA 923 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +D + A ++ +IF K+ L + ++ + E +V+G Y Sbjct: 924 GVDRLMGMASRAAEDAAIGQADIFG-SAAIEPQKLQLPATAPWLAAEKLHREFQVVGCYL 982 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATI-RGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HPLD Y P L K+ ++ + + A + RG RLA V +KQ++KTR G+++G V FS Sbjct: 983 SAHPLDDYLPTLEKLRVQSWADFQAAVKRGATAGRLAGTVTAKQERKTRTGNKMGIVQFS 1042 Query: 1022 EPAKEYEANFF 1032 + +YEA F Sbjct: 1043 DATGQYEAVLF 1053 >gi|90419565|ref|ZP_01227475.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans SI85-9A1] gi|90336502|gb|EAS50243.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans SI85-9A1] Length = 1153 Score = 1184 bits (3063), Expect = 0.0, Method: Compositional matrix adjust. Identities = 586/1033 (56%), Positives = 750/1033 (72%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 + P FVHL+VHS++SLLEGAL L+ I+ D PAI I DTNNLF ALEFS+KA A Sbjct: 4 DTKPKFVHLRVHSAFSLLEGALKLDQIIKFAKGDDAPAIGICDTNNLFGALEFSEKASKA 63 Query: 66 GIQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GIQPI GCQ+D++ D + + ++ +VL+ +T GY L+E+VS YL Sbjct: 64 GIQPITGCQIDVEFSDCEESRGGRRERSLSSIAPLVLIAATEAGYANLVEIVSLAYLGHA 123 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + WL E +EG+I LTGG GPI A + S +A R+ +FGDRLYV Sbjct: 124 DNPRPHVLFEWL-ETRSEGIIALTGGPLGPIGSAIAADRSDLARSRMERMAPVFGDRLYV 182 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQRH G R E+ +QLAY LPLVATN FL +D+EAHD L+AVA + +VSQ+D Sbjct: 183 ELQRHEGRSRKVEADTLQLAYDMALPLVATNEPFFLKADDFEAHDALIAVAGNRLVSQED 242 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R++ DH LK+++EM +F+DLPEAL NTVEIA+RCS+ + APILPRF + D + Sbjct: 243 RRRLSRDHSLKSQNEMSVLFADLPEALHNTVEIAQRCSYRPRTRAPILPRFAGADADAAE 302 Query: 305 KEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E LR +A+ GLE RLA +A G A+ YR+RL+FEL++I RMKF GYFLIVAD Sbjct: 303 AEAAEVAELRRQAIEGLEARLAAHGLAPGETAESYRERLEFELSIIERMKFPGYFLIVAD 362 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK IPVGPGRGSGAGS+ AYALT+TD+DPLRFSLLFERFLNP+R+SMPDFDIDF Sbjct: 363 FIKWAKAQGIPVGPGRGSGAGSLVAYALTVTDLDPLRFSLLFERFLNPERVSMPDFDIDF 422 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG E+V QIITFG+LQA+A LRDVGR L+M Y QVD+LCKL+P + Sbjct: 423 CQDRREEVIRYVQEKYGREQVGQIITFGTLQARAVLRDVGRVLEMSYGQVDKLCKLVPQN 482 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PV+L QA+ ++ R +EAR + VDRL+ I+ KLEGLYRHASTHAAGIVIGDRPLSQ Sbjct: 483 PANPVTLAQALVEEPRLQEAREKEEIVDRLISIALKLEGLYRHASTHAAGIVIGDRPLSQ 542 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+LQK+++ +A+ G +DLS I Sbjct: 543 LVPMYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLQKAVELIARTGPTIDLSAI 602 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY ++T T+G+FQ+ES GMR+AL GM+PD EDIIALV+LYRPGP++NI Y Sbjct: 603 PLDDARTYEMMTRGETVGVFQVESVGMRKALIGMRPDRFEDIIALVALYRPGPMENIPTY 662 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RK+G+E+ IH I P+LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 663 NARKHGEEEPDFIHDKIAPILKETQGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 722 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 + EMDKQ+ RF+ GA NG+ KT + IF+LLAKFADYGFNKSHAAAYA+++YQTA++K Sbjct: 723 RAEMDKQRVRFVEGAVANGLDKTQSNMIFDLLAKFADYGFNKSHAAAYALVAYQTAYLKA 782 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 ++PVEFLAASMTL+ N EK+ F DA + I+I+PPSV T F+VG+N+I+Y+LAA Sbjct: 783 NHPVEFLAASMTLDAGNTEKLNDFRMDAMRLGIKIVPPSVQTSFRQFEVGENKIFYALAA 842 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI+ D F SLEDFC+R+D K +N+R LE L+ AGALDCFG+ R L Sbjct: 843 IKGVGEQAVDHIVATRGDGSFQSLEDFCARIDPKIVNKRTLEFLIAAGALDCFGHERALL 902 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 ++D + YA V + R + ++F G+ + + L + SS + E + +GF Sbjct: 903 CANIDLMASYALRVHEGRASGQHDMFGG-AGSEPEPLHLNPAQLWTSSEKLLREFQAIGF 961 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD YK L+++ ++ + E + A RG +LA V S+Q++KTR G ++G + Sbjct: 962 YLSAHPLDEYKTTLKRLRVQTHAEVIHAVKRGATAGKLAGTVTSRQERKTRSGGKLGIIQ 1021 Query: 1020 FSEPAKEYEANFF 1032 S+P+ +YE F Sbjct: 1022 LSDPSGQYEVVLF 1034 >gi|114707392|ref|ZP_01440289.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506] gi|114537273|gb|EAU40400.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506] Length = 1151 Score = 1181 bits (3055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 584/1032 (56%), Positives = 753/1032 (72%), Gaps = 17/1032 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF+HL+ HS++SLLEGAL L+ I+ AD PA+ I DTNNLF ALEFS+KA +G+QP Sbjct: 9 SFIHLRSHSAFSLLEGALKLDQIIKFALADGAPAVGIADTNNLFGALEFSEKAAKSGLQP 68 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGCQLD+D +D ++ K P +VL+ S+ GY L+E+VS+ YL + Sbjct: 69 IIGCQLDVDFEDG--ENDREKAALSPAP-VVLIASSDIGYANLVEIVSKAYLGHEANVRP 125 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + SWL ++ EG+I LTGG SGPI A +AE RL K +GDRLYV LQR Sbjct: 126 HVKASWLDDL-AEGVIALTGGPSGPIGLAIAAERRPIAEARLDRLKTAYGDRLYVELQRQ 184 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 GY R E+ ++LAY LP+VATN F EDY+AHD L+AVA + +VS +DR R++ Sbjct: 185 HGYSRRLEAGTLELAYGCNLPIVATNEPYFYCAEDYDAHDALLAVASNRLVSHEDRRRLS 244 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE--E 307 DH LKN++EM +F+DLPEALENT+EIARRC+F +V PILPRF + D E E Sbjct: 245 RDHCLKNQNEMAELFADLPEALENTIEIARRCNFRPKVRQPILPRFAGADADPADAERAE 304 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ELR +A GL+ R+ + IA G+ ++YR+RLDFEL +I RM+F GYFLIVADFI+WA Sbjct: 305 VAELRRQAFEGLDRRMEKLGIADGHTVEEYRERLDFELTIIERMQFPGYFLIVADFIKWA 364 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQDRR Sbjct: 365 KDHGIPVGPGRGSGAGSLVAYALTITDLDPLRFSLLFERFLNPERVSMPDFDIDFCQDRR 424 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVIRYVQ KYG E+V QIITFG+LQA+A LRDVGR L+M Y VD+LCKL+P +PA+PV Sbjct: 425 EEVIRYVQEKYGREQVGQIITFGTLQARAVLRDVGRVLEMSYGHVDKLCKLVPANPANPV 484 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L QA+ ++ R +EAR + VDRL+ IS KLEGLYRHASTHAAGIVIGDRPL +LVPMY Sbjct: 485 TLAQALEEEPRLKEAREKEEIVDRLISISLKLEGLYRHASTHAAGIVIGDRPLQKLVPMY 544 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 RD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT LQ ++ ++ + K+DLS IP DD Sbjct: 545 RDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLQTAVSYVELNKQTKIDLSAIPLDD 604 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 TY +LT T+G+FQLES GMR+AL GM+PD EDIIALV+LYRPGP++NI YN RK Sbjct: 605 KPTYDMLTRGETVGVFQLESVGMRKALIGMRPDVFEDIIALVALYRPGPMENIPTYNARK 664 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+E+ IH I P+LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI+ EM Sbjct: 665 HGEEEPDFIHEKIAPILKETQGVIIYQEQVMQIAQVLSGYSLGEADMLRRAMGKKIRAEM 724 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 DKQ+ RF+ GA + GI K A IF+LLAKFA+YGFNKSHAAAYA+++YQTA++K +YP Sbjct: 725 DKQRVRFVDGAVERGIQKKQADMIFDLLAKFANYGFNKSHAAAYALVAYQTAYLKANYPA 784 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMTL+ N EK+ +F DAR+ I+++PPSV T F+V N+I+Y+LAAIKGV Sbjct: 785 EFLAASMTLDAGNTEKLNEFRLDARRLGIEVVPPSVQTSFRKFEVSGNKIFYALAAIKGV 844 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G HI+E DKPF SLEDFC RVD K +N+R E L+ AGA DCFG+ R L+ ++ Sbjct: 845 GEHAVDHIVEKRGDKPFKSLEDFCGRVDPKIINKRTFEFLIAAGAFDCFGHERAVLMSNV 904 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFS---DKITLEKFSVENSSVRFENEQRVLGFY 962 + + YA + ++RT+ +IF G FS + + L + +S + E + +GF+ Sbjct: 905 ERMMGYAARIAESRTSGQADIF----GAFSSEPEPLRLGPAPLWTASEKLLREFQAIGFH 960 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 S HPLD Y+ L+++ ++ + ++VA ++ + +RLA V S+Q++KTR G +IG + Sbjct: 961 LSAHPLDEYRSTLKRLRVQSHADAVAAVKRGASAVRLAGTVTSRQERKTRSGGKIGIIQM 1020 Query: 1021 SEPAKEYEANFF 1032 S+ + +YE F Sbjct: 1021 SDASAQYEVVLF 1032 >gi|319408651|emb|CBI82306.1| DNA polymerase III alpha subunit [Bartonella schoenbuchensis R1] Length = 1162 Score = 1181 bits (3055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 594/1030 (57%), Positives = 753/1030 (73%), Gaps = 8/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS+YSLLEGAL + I+ +D PAIAITDTNNLF ALEFSQ G+Q Sbjct: 16 PRFIHLRVHSAYSLLEGALKIRQIIQHAISDHAPAIAITDTNNLFGALEFSQYCFTDGVQ 75 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL ID + K P+ SIVL ++ GY LI LVSR YL + Sbjct: 76 PIIGCQLAIDFEHENCDPRLIKPRNPSDFASIVLFAASEAGYAHLISLVSRAYLDKRDTD 135 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL EG+I LTGG +GPI+ A N + A + L K++FGDRLYV LQ Sbjct: 136 PPHIKADWLLS-QNEGIIALTGGWNGPINLALVENKKERAVEHLTYLKQIFGDRLYVELQ 194 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E+ +V+LAY HE+PLVATN + FL++E YEAHD LMAVA +VS +R R Sbjct: 195 RHSSYDRKVEAALVELAYEHEIPLVATNEAFFLNKEGYEAHDALMAVAEGQIVSNPNRRR 254 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305 VTPDHYLK++ EMVS+FSDLPEALEN+VEIA RC + PILPRF E+ D + Sbjct: 255 VTPDHYLKSQDEMVSLFSDLPEALENSVEIALRCHTFVPTRKPILPRFTERSVDPDSALE 314 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 +E EL N+A GL++RL +A+GY +DY QRLD+E++VI RM+F GYFLIV+DFI+ Sbjct: 315 DEAKELLNQAKVGLKMRLETIGLAEGYTVEDYEQRLDYEISVITRMQFPGYFLIVSDFIK 374 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQD Sbjct: 375 WAKGHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQD 434 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P+ P Sbjct: 435 RREEVIQYVQEKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPSMPGS 494 Query: 486 PVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + L AI D+ +F+E + +P + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVP Sbjct: 495 NIELAVAIRDEPKFKEEKKKNPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVP 554 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMK +E+AGL+KFDFLGLKTLT+L+ + DF+A++GVKVDLS I + Sbjct: 555 MYRDPRSDMPVTQFNMKCVEQAGLVKFDFLGLKTLTVLKMATDFVARKGVKVDLSHISLN 614 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI YN R Sbjct: 615 DETTYTMLARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPMENIPTYNAR 674 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GKE+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI +E Sbjct: 675 KHGKEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIHKE 734 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ RF+ GA GI K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK H+P Sbjct: 735 MQKQRTRFVRGAVDGGIDKDQADIIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAHHP 794 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMT +M N +K+ F ++A + I+++ P V T C F++G+ IYYSLAAIKG Sbjct: 795 VEFLAASMTCDMTNTDKLNDFRREALRLGIEVIAPCVQTSCRVFEIGEKCIYYSLAAIKG 854 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G HI+ DKPF LEDFC R+D + +N+R +ESL++AGALDCF +R LL S Sbjct: 855 IGDLVVDHIVACRGDKPFKDLEDFCERIDPRIVNKRAMESLIYAGALDCFQVAREVLLAS 914 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L + A + N ++ +IF G + + L + S + + + +E +V+GFYFS Sbjct: 915 LGTLNARAIRIIDNNSSGQTDIFGMMGGP-KEPLILSQASPWSLAEKLHHEFQVIGFYFS 973 Query: 965 GHPLDVYKPILRKMGIKGYEE-SVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD Y+ IL K ++ + + S A +G RLA +V+KQ +KT+ G ++G + FS+ Sbjct: 974 AHPLDEYQTILTKKRVQIWSDFSDAVKKGATAARLAGTIVAKQIRKTKSGKKMGVIQFSD 1033 Query: 1023 PAKEYEANFF 1032 + YEA F Sbjct: 1034 TSGHYEAVIF 1043 >gi|240850744|ref|YP_002972144.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup] gi|240267867|gb|ACS51455.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup] Length = 1164 Score = 1171 bits (3029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 588/1030 (57%), Positives = 754/1030 (73%), Gaps = 8/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS+YSLLEGAL + I+ + +D PA+AITDTNNLF ALEFSQ A G+Q Sbjct: 18 PRFIHLRVHSAYSLLEGALKIPQIIQQAISDHAPAVAITDTNNLFGALEFSQHCLAHGVQ 77 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL +D D + K P+ SIVLL ++ GY L+ LVSR YL + Sbjct: 78 PIIGCQLTVDFCDENDHSRLAKWRNPSDFCSIVLLAASEIGYAHLVRLVSRAYLDKRDTD 137 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I +WL +EG+I+LTGG GPI+ + + A +RL+ KK F DRLYV LQ Sbjct: 138 PPHIKANWLSA-HSEGIIVLTGGKGGPINLSLAEEKKEHAVERLIYLKKSFADRLYVELQ 196 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E+ +++LAY HE+PLVATN + FL E YEAHD LMAV+ +VS DR R Sbjct: 197 RHGSYDRRVEADLIELAYAHEIPLVATNEAFFLKREGYEAHDALMAVSEGQIVSNPDRKR 256 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC--DDIQK 305 VTPDHYLK++ EMV++FSDLPEALEN+VEIA RC + PILPRFIE+ ++ + Sbjct: 257 VTPDHYLKSQDEMVTLFSDLPEALENSVEIALRCHIATPLRKPILPRFIEQSANSENTLE 316 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E++EL N+A AGL++RL +A+GY DY QRLD+E++VI RM+FSGYFLIV+DFI+ Sbjct: 317 VEDSELLNQAKAGLKMRLETIGLAEGYTIADYEQRLDYEISVITRMQFSGYFLIVSDFIK 376 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+ Sbjct: 377 WAKVHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 436 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+YVQ KYG +VAQIITFG LQA+A LRDVGR L++PY QVD L KLIP P Sbjct: 437 RREEVIQYVQKKYGRNQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLIPATPGS 496 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 V L AI D+ +F E + DP V R L+I+ +LEGLYRHASTHAAGIVIGDRPL +LVP Sbjct: 497 QVELADAIKDEPKFEEEKKKDPVVGRALDIALQLEGLYRHASTHAAGIVIGDRPLWELVP 556 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K+DLS IP + Sbjct: 557 MYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKIDLSNIPLN 616 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY ++ T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI YN R Sbjct: 617 DETTYAMMARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPMENIPTYNAR 676 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI E Sbjct: 677 KHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIHAE 736 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ RF++GA G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK +YP Sbjct: 737 MQKQRTRFVNGAVAGGVDKDQADIIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKANYP 796 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMT +M N +K+ F ++A + I+++ PS+ T F+VGDN IYYSLAAIKG Sbjct: 797 VEFLAASMTYDMTNTDKLNDFRREALRLGIEVIAPSIQTSHRVFEVGDNCIYYSLAAIKG 856 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG T HI+ DK F LEDFC+RVD + +N+R +ESLV AGA DCF +R LL + Sbjct: 857 VGETVVDHIVACRGDKIFKDLEDFCARVDPRIVNKRAMESLVCAGAFDCFNIAREVLLAN 916 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L + A + + ++ +IF G + + L + + + + E + +GFYFS Sbjct: 917 LGTLHARALRILDDNSSGQVDIFGM-AGGLKEPLILSQTTSWLPAEKLYREFQAIGFYFS 975 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPL+ Y+ IL K I+ + ++G RLA VV+K +KT+ G ++G + FS+ Sbjct: 976 AHPLEEYQAILDKKRIQTWVNFANAVKGGATAARLAGTVVAKNVRKTKSGKKMGIIHFSD 1035 Query: 1023 PAKEYEANFF 1032 + +YEA F Sbjct: 1036 TSGQYEAVLF 1045 >gi|163868512|ref|YP_001609721.1| DNA polymerase III subunit alpha [Bartonella tribocorum CIP 105476] gi|161018168|emb|CAK01726.1| DNA polymerase III alpha subunit [Bartonella tribocorum CIP 105476] Length = 1155 Score = 1169 bits (3024), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/1038 (56%), Positives = 757/1038 (72%), Gaps = 8/1038 (0%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + +Y P F+HL+VHS+YSLLEGAL + I+ + +DQ PAIAITDTNNLF ALEFSQ Sbjct: 1 MQEYKNSLPRFIHLRVHSAYSLLEGALKIPQIIQQAISDQAPAIAITDTNNLFGALEFSQ 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRM 119 + G+QPIIGCQL ID D + K + SI+L ++ GY L+ LVSR Sbjct: 61 YCLSHGVQPIIGCQLAIDFCDENDHSRLVKGRHASDFCSIILFAASETGYAHLVRLVSRA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 YL I WL E +EG+I LTGG GPI+ A + A +RL+ KK+F Sbjct: 121 YLDKCDTDPPHIKADWLSE-HSEGIIALTGGKGGPINLALSEEKKERAVERLIYLKKIFS 179 Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 DRLYV LQRH YDR E+++++LAY HE+PLVATN + FL E YEAHD LMAV+ + Sbjct: 180 DRLYVELQRHGSYDRGVEAELIELAYAHEIPLVATNEAFFLKREGYEAHDALMAVSEGQI 239 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 VS DR RVTPDHYLK++ EMV++FSDLPEALEN+VEIA RC + PILPRFIE+ Sbjct: 240 VSNPDRKRVTPDHYLKSQDEMVALFSDLPEALENSVEIALRCHIATPLRKPILPRFIEQS 299 Query: 300 C--DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 ++ + E++EL N+A AGL++RL +A+GY DY QRLD+E++VI RM+FSGYF Sbjct: 300 AHSENTLEAEDSELLNQAKAGLKMRLETIGLAEGYTIADYEQRLDYEVSVITRMQFSGYF 359 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV+DFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPD Sbjct: 360 LIVSDFIKWAKIHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPD 419 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ+RR+EVI+YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L K Sbjct: 420 FDIDFCQERREEVIQYVQKKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTK 479 Query: 478 LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V L AI D+ +F E + DP V R L+I+ +LEGLYRHASTHAAGIVIGD Sbjct: 480 LIPATPGSQVELADAIKDEPKFEEEKKKDPVVGRALDIALQLEGLYRHASTHAAGIVIGD 539 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL +LVPMYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G K+ Sbjct: 540 RPLWELVPMYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARQGDKI 599 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DLS IP +D TY ++ T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++ Sbjct: 600 DLSNIPLNDEVTYAMMARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPME 659 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI YN RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRA Sbjct: 660 NIPTYNARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRA 719 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKKI EM KQ+ RF++GA G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQT Sbjct: 720 MGKKIHAEMQKQRTRFVNGAVAGGVDKEQADIIFDLLAKFADYGFNKSHAAAYAIVSYQT 779 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A+MK +YPVEFLAASMT +M N +K+ F ++A + I+++ PS+ T F+VGD+ IY Sbjct: 780 AYMKANYPVEFLAASMTHDMTNTDKLNDFRREALRLGIEVIAPSIQTSHRVFEVGDHCIY 839 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 YSLAAIKGVG T HI+ +K F LEDFC+RVD + +N+R +ESLV AGA DCF Sbjct: 840 YSLAAIKGVGETVVDHIVACRGNKIFKDLEDFCARVDLRIVNKRAMESLVCAGAFDCFNI 899 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LL +L I A + N ++ +IF E G + + L + + + + E Sbjct: 900 AREILLANLGTIHARALRILDNNSSGQFDIFGME-GGLKEPLILSQTTPWLPAEKLYREF 958 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSR 1014 + +GFYFS HPLD Y+ IL K ++ + ++G RLA VV+K +KT+ G + Sbjct: 959 QAIGFYFSAHPLDEYQTILAKKRVQTWSHFANAVKGGATAARLAGTVVAKNVRKTKSGKK 1018 Query: 1015 IGWVTFSEPAKEYEANFF 1032 +G + FS+ + +YEA F Sbjct: 1019 MGIIHFSDTSGQYEAILF 1036 >gi|319898845|ref|YP_004158938.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73] gi|319402809|emb|CBI76360.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73] Length = 1162 Score = 1166 bits (3016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/1030 (56%), Positives = 760/1030 (73%), Gaps = 8/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS+YSLLEGAL + I+ +D PAIAITDTNNLF ALEFSQ A GIQ Sbjct: 16 PRFIHLRVHSAYSLLEGALKIKQIIQHAISDHMPAIAITDTNNLFGALEFSQYCFADGIQ 75 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL ID D ++ K P+ SIVL ++ GY L+ LVSR YL D+ Sbjct: 76 PIIGCQLAIDFDDENCNSSLAKLRHPSDYSSIVLFAASETGYAHLVRLVSRAYL-DKNDN 134 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + + L EG+I LTGG SGPI+ A + + A +RL KK+FGDRLYV LQ Sbjct: 135 DLPHIKADLLLTHHEGIIALTGGRSGPINLALAEDRKERAVERLTYLKKIFGDRLYVELQ 194 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E+ +++LAYT+E+PLVATN + FL++E Y AHD LMAVA VVS DR R Sbjct: 195 RHGSYDRKVEAVLIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGQVVSDPDRKR 254 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305 VTPDHYLK++ EM+S+FSDLPEALEN+VEIA RC + PILPRFIE+ D + + Sbjct: 255 VTPDHYLKSQDEMISLFSDLPEALENSVEIALRCHAYAPIRKPILPRFIEQSADTSSVLE 314 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E EL N+A AGL++RL +A+GY DY QRL++E+++I RM+FSGYFLIV+DFI+ Sbjct: 315 SEAKELLNQAEAGLKMRLETIGLAEGYTIADYEQRLNYEISIITRMQFSGYFLIVSDFIK 374 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+ Sbjct: 375 WAKAHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 434 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P P Sbjct: 435 RREEVIRYVQKKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPATPGS 494 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 V L QAI D+ +F E + DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVP Sbjct: 495 NVELAQAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVP 554 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP + Sbjct: 555 MYRDPRSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIPLN 614 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +++ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN R Sbjct: 615 DEVTYAMMSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNIR 674 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+ +E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI +E Sbjct: 675 KHKEEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIHKE 734 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M +Q+ RF+SGA GI K A IF+LLAKFADYGFNKSHA AYA++SY TA+MK H+P Sbjct: 735 MQEQRTRFVSGAVDGGIDKDQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAHHP 794 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMT +M N +K+ F ++A + I+++ P V T F+VG+N IYYSL+A+KG Sbjct: 795 VEFLAASMTYDMTNTDKLNDFWREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKG 854 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG HI+ DKPF LEDFC R+D + +N+R +ESL++AGA DCF +R LL S Sbjct: 855 VGDVVVDHIVACRGDKPFKDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLLAS 914 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L + A + N ++ +IF G + + L + S + + + E + +GFYFS Sbjct: 915 LVTLNARALRILDNNSSGQIDIFGM-IGGLKEPLILSQASPWSPAEKLHYEFQAIGFYFS 973 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPL Y+ +L K ++ ++ A+++G RLA +V+++ +KTR G ++G + FS+ Sbjct: 974 AHPLSEYQDVLIKKRVQTWKNFAASVKGGATAARLAGTIVARKIRKTRSGKKMGVIQFSD 1033 Query: 1023 PAKEYEANFF 1032 + +YEA F Sbjct: 1034 TSGQYEAVIF 1043 >gi|319404155|emb|CBI77748.1| DNA polymerase III alpha subunit [Bartonella rochalimae ATCC BAA-1498] Length = 1162 Score = 1159 bits (2997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 583/1032 (56%), Positives = 752/1032 (72%), Gaps = 12/1032 (1%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS+YSLLEGAL + I+ +D+ PAIAITDTNNLF ALEFSQ + GIQ Sbjct: 16 PRFIHLRVHSAYSLLEGALKVKQIIQHAISDRMPAIAITDTNNLFGALEFSQYCFSDGIQ 75 Query: 69 PIIGCQLDIDMQD---NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIGCQL ID D N +T + SIVL ++ GY L+ LVSR YL Sbjct: 76 PIIGCQLAIDFGDENCNSPLTKLHHSS--DYSSIVLFAASETGYSHLVRLVSRAYLDKND 133 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I +L EG+I LTGG GPI+ A + + A +RL KK+FGDRLYV Sbjct: 134 TDLPHIKADFLLR-HHEGIIALTGGPGGPINSALTEDKKERAIERLTYLKKIFGDRLYVE 192 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 LQRH YDR E +++LAYT+E+PLVATN + FL++E Y AHD LMAVA VVS +R Sbjct: 193 LQRHGSYDRKVEEALIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGQVVSNPNR 252 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DI 303 RVT DHYLK++ EMVS+FSDLPEALEN+VEIA RC + PILP FIE+ D + Sbjct: 253 KRVTSDHYLKSQDEMVSLFSDLPEALENSVEIALRCHAYAPIRKPILPGFIERSADTSSV 312 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E EL ++A AGL++RL +A+GY DY QRL++E++VI RM+FSGYFLIV+DF Sbjct: 313 LEAEAKELLDQAKAGLKMRLETIGLAEGYTIADYEQRLNYEISVITRMQFSGYFLIVSDF 372 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFC Sbjct: 373 IKWAKAHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFC 432 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RR+EVIRYVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY VD L KL+P P Sbjct: 433 QERREEVIRYVQQKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRLVDYLTKLVPATP 492 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + L QAI D+ +F E + DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+L Sbjct: 493 GSNIELAQAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSEL 552 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VPMYRD RSD+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP Sbjct: 553 VPMYRDPRSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIP 612 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D TY +++ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN Sbjct: 613 LNDEATYAMMSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENISTYN 672 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+ +E+I SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI Sbjct: 673 IRKHKEEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIH 732 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +EM +Q+ RF+SGA G+ K A IF+LLAKFADYGFNKSHA AYA++SY TA+MK H Sbjct: 733 KEMQEQRARFVSGAVDGGLDKEQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAH 792 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 +PVEFLAASMT +M N +K+ F ++A + I+++ P V T F+VG+N IYYSL+A+ Sbjct: 793 HPVEFLAASMTYDMTNTDKLNDFRREALRLGIEVVAPCVQTSHRIFEVGENCIYYSLSAV 852 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGVG HI+ DKPF LEDFC R+D + +N+R +ESL++AGA DCF +R LL Sbjct: 853 KGVGDMVVDHIVACRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLL 912 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 SL + A + N ++ +IF G + + L + S + + + E +V+GFY Sbjct: 913 ASLVTLNARALRILDNNSSGQVDIF-EMVGGLKEPLILSQASPWSVAEKLHYEFQVIGFY 971 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020 FS HPL Y+ +L K ++ + A+++G RLA VV+KQ +KT+ G ++G + F Sbjct: 972 FSAHPLSEYQDVLIKKRVQTWNNFAASVKGGATAARLAGTVVAKQIRKTKSGKKMGVIQF 1031 Query: 1021 SEPAKEYEANFF 1032 S+ + +YEA F Sbjct: 1032 SDTSGQYEAVIF 1043 >gi|49475735|ref|YP_033776.1| DNA polymerase III subunit alpha [Bartonella henselae str. Houston-1] gi|49238542|emb|CAF27778.1| DNA polymerase III alpha subunit [Bartonella henselae str. Houston-1] Length = 1162 Score = 1156 bits (2991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 586/1030 (56%), Positives = 746/1030 (72%), Gaps = 8/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS+YSLLEGAL + I+ +D PA+AITDTNNLF ALEFSQ + GIQ Sbjct: 16 PHFIHLRVHSAYSLLEGALKIPQIIQHAISDHTPAVAITDTNNLFGALEFSQYCFSYGIQ 75 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL ID D K P+ SIVLL ++ GY L+ LVSR YL Sbjct: 76 PIIGCQLTIDFGDGNDNPRLVKWRHPSDFCSIVLLAASEIGYAHLVRLVSRAYLDKCDTD 135 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL EG+I+LTGG GPI+ + + A +RL+ KK+F DRLYV LQ Sbjct: 136 PPHIKADWLLS-HNEGIIVLTGGRGGPINFSLAEERKERAIERLIYLKKIFDDRLYVELQ 194 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH +D+ E+ +++LAY +E+PLVATN + FL+ E YEAHD LMAVA +VS DR R Sbjct: 195 RHGSFDQKVEAALIELAYAYEIPLVATNEAFFLNREGYEAHDALMAVAEGQIVSNPDRKR 254 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305 VTPDHYLK++ EMV++FSDLPEALEN+VEIA RC PILPRFIE+ D + Sbjct: 255 VTPDHYLKSQEEMVALFSDLPEALENSVEIALRCHTATPTRKPILPRFIEQSVDLNFTLE 314 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E+ EL N+A AGL++RL +A+GY DY QRLD+E++VI RM+FSGYFLIV+DFI+ Sbjct: 315 AEDRELLNQAKAGLKMRLKTIGLAEGYTITDYEQRLDYEISVITRMQFSGYFLIVSDFIK 374 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK ++IPVGPGRGSGAGS+ AYAL ITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+ Sbjct: 375 WAKVHDIPVGPGRGSGAGSLVAYALMITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 434 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QV+ L KL+P P Sbjct: 435 RREEVIHYVQKKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVEYLTKLVPAAPGS 494 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 V L AI D+ +F E + DP++ R L+I+ +LEGLYRHASTHAAGIVIGDRPLS+L+P Sbjct: 495 QVELADAIKDEPKFEEEKKKDPAIGRTLDIALQLEGLYRHASTHAAGIVIGDRPLSELIP 554 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K++LS IP + Sbjct: 555 MYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKINLSNIPLN 614 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY ++ T+GIFQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI +YN R Sbjct: 615 DETTYAMMARGETVGIFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPMENIPIYNAR 674 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI E Sbjct: 675 KHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIHTE 734 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ RF++GA G+ K A IF+LLAKFADYGFNKSHAAAYA+ISYQTA+MK H+P Sbjct: 735 MQKQRTRFVNGAVAGGVDKDQADIIFDLLAKFADYGFNKSHAAAYAIISYQTAYMKAHHP 794 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMT +M N EK+ F ++A + I+++ P V T F+VGDN IYYSLAAIKG Sbjct: 795 VEFLAASMTYDMMNTEKLNDFRREALRLGIKVIAPCVQTSHRVFEVGDNCIYYSLAAIKG 854 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG HI+ +K F LEDFC R+D + +N+R +ESLV AGA DCF +R LL S Sbjct: 855 VGEAVVDHIVACRGNKVFKDLEDFCERIDPRIVNKRAMESLVCAGAFDCFNIAREVLLAS 914 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L + A + + ++ +IF + + L + S + + E + +GFYFS Sbjct: 915 LGTLHARALRILDDNSSGQTDIFGI-TSVLKEPLILSQASPWSLDEKLHREFQAIGFYFS 973 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD Y+ IL K I+ + ++ RLA VV+KQ +KT+ G ++G V FS+ Sbjct: 974 AHPLDEYQAILVKKRIQNWVNFANAVKAGATAARLAGTVVAKQVRKTKSGKKMGIVHFSD 1033 Query: 1023 PAKEYEANFF 1032 + +YEA F Sbjct: 1034 TSGQYEAVLF 1043 >gi|319405608|emb|CBI79231.1| DNA polymerase III alpha subunit [Bartonella sp. AR 15-3] Length = 1140 Score = 1155 bits (2988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 579/1023 (56%), Positives = 749/1023 (73%), Gaps = 8/1023 (0%) Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75 +HS+YSLLEGAL + I +D PAIAITDTNNLF ALEFSQ GIQPIIGCQL Sbjct: 1 MHSAYSLLEGALKIKQITQHAISDNMPAIAITDTNNLFGALEFSQSCFIDGIQPIIGCQL 60 Query: 76 DIDMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134 ID D ++ K + SI+L ++ GY L++LVSR YL I Sbjct: 61 AIDFGDENCNSSLAKLRHSSDFSSIILFAASEIGYANLVQLVSRAYLDKSDVDCPHIKAD 120 Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194 WL +G+I LTGG SGPI+ A + + A KRL KK+F DRLYV LQR+ YD+ Sbjct: 121 WLL-THHKGIIALTGGPSGPINLALAEDRKERAVKRLTYLKKIFSDRLYVELQRYSSYDQ 179 Query: 195 YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 E+ +V+LAYT+ELPLVATN + FL++E YEAHD LMAVA VVS DR RVTP+HYL Sbjct: 180 KVEAALVELAYTYELPLVATNEAFFLNKEGYEAHDALMAVAEGQVVSNPDRKRVTPEHYL 239 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENELR 312 K++ EMVS+FSDLPEALEN+VEIA RC + PILPRFIE D + + E EL Sbjct: 240 KSQDEMVSLFSDLPEALENSVEIALRCHAYAPIRKPILPRFIESSADLSSVLEAEAKELL 299 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 ++A +GL++RL +A+GY DY QRL++E+++I RM+FSGYFLIV+DFI+WAK ++I Sbjct: 300 DQAESGLKMRLETIGLAEGYTIADYEQRLNYEISIITRMQFSGYFLIVSDFIKWAKAHDI 359 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 PVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+RR+EVIR Sbjct: 360 PVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQERREEVIR 419 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QA 491 YVQ KYG +VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P P V L +A Sbjct: 420 YVQEKYGCNQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPATPGSNVELAKA 479 Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 I D+ +F E + DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPMYRD RS Sbjct: 480 IIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPMYRDPRS 539 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611 D+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G+K++LS IP +D TY + Sbjct: 540 DMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGIKINLSCIPLNDEVTYAM 599 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 ++ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN RK+ +E+I Sbjct: 600 MSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIATYNIRKHKEEEI 659 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +EM +Q+ R Sbjct: 660 TSIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKEMQEQRTR 719 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 F+SGA GI K A IF+LLAKFADYGFNKSHA AYA++SYQTA+MK H+PVEFLAAS Sbjct: 720 FVSGAVDGGIDKDQANVIFDLLAKFADYGFNKSHATAYAIVSYQTAYMKAHHPVEFLAAS 779 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 MT +M N +K+ F ++A + I+++ P V T F+VG+N IYYSL+A+KGVG Sbjct: 780 MTYDMTNTDKLNDFRREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKGVGDMVVD 839 Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911 HI+ DKPF LEDFC R+D + +N+R +ESL++AGA DCF +R LL SL + Sbjct: 840 HIVARRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNIAREVLLASLATLNAR 899 Query: 912 AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 A + N ++ +IF G + + L + S +S+ + +E + +GFYFS HPL Y Sbjct: 900 ALRILDNNSSGQIDIFGM-IGGLKEPLILSQVSPWSSAEKLYHEFQTIGFYFSAHPLSEY 958 Query: 972 KPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +L K ++ + + +I+G RLA VV+KQ +K R G ++G + FS+ + +YEA Sbjct: 959 QDVLIKKRVQTWSDFATSIKGGATAARLAGTVVAKQIRKIRSGKKMGIIQFSDTSGQYEA 1018 Query: 1030 NFF 1032 F Sbjct: 1019 VIF 1021 >gi|49474348|ref|YP_032390.1| DNA polymerase III subunit alpha [Bartonella quintana str. Toulouse] gi|49239852|emb|CAF26246.1| DNA polymerase III alpha subunit [Bartonella quintana str. Toulouse] Length = 1162 Score = 1152 bits (2980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 584/1032 (56%), Positives = 751/1032 (72%), Gaps = 12/1032 (1%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS+YSLLEGAL + I+ +D PA+AITDTNNLF ALEFSQ + GIQ Sbjct: 16 PRFIHLRVHSAYSLLEGALKIPQIIQHAISDAMPAVAITDTNNLFGALEFSQHCFSHGIQ 75 Query: 69 PIIGCQLDIDM---QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIGCQL ID DN + + + PF SIVLL ++ GY L+ LVSR YL Sbjct: 76 PIIGCQLTIDFGDGNDNPRFV-KWRHPFDFC-SIVLLAASKIGYAHLVRLVSRAYLDKCD 133 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL +EG+I LTGG GPI+ + A +RL+ KK+F DRLYV Sbjct: 134 TDPPHIKADWLLS-QSEGIIALTGGRGGPINFCLAEDKKARAVERLIYLKKVFNDRLYVE 192 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 LQRH +DR E+ +++LAY H +PLVATN + FL+ + YEAHD LMAVA +VS DR Sbjct: 193 LQRHGSFDRKVETALIELAYAHGIPLVATNEAFFLNRKGYEAHDALMAVAEGQIVSNPDR 252 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD--I 303 RVTPDHYLK + EMV++FSDLPEALEN+VEIA RC + PILPRFIE+ D Sbjct: 253 KRVTPDHYLKPQDEMVALFSDLPEALENSVEIALRCHTATPIRKPILPRFIEQSVDSNFT 312 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +EE++EL N+A GL+ RL +A+GY DY++RLD+E++VI RM+FSGYFLIV+DF Sbjct: 313 LEEEDSELLNQAKDGLKRRLETIGLAEGYTIADYQKRLDYEISVITRMQFSGYFLIVSDF 372 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFC Sbjct: 373 IKWAKVHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFC 432 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RR+EVI YVQ +YG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P P Sbjct: 433 QERREEVIHYVQKRYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPAAP 492 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + V L AI D+ +F E + DP++ R L+I+ +LEGLYRHASTHAAGIVIGDRPLS+L Sbjct: 493 GNQVELADAIKDEPKFEEEKKKDPAIGRTLDIALQLEGLYRHASTHAAGIVIGDRPLSEL 552 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RS++PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K+DLS IP Sbjct: 553 VPLYRDPRSNMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKIDLSHIP 612 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D TY ++ T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI +YN Sbjct: 613 LNDEATYAMMARGETVGVFQVESSGMRKALIGMRPDRIEDIIALVALYRPGPMENIPIYN 672 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI Sbjct: 673 ARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIH 732 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEM KQ+ RF++GA G+ K A IF+LLAKFADYGFNKSHAAAYA+ISYQTA+MK H Sbjct: 733 EEMQKQRTRFVNGAVAGGVDKEQANIIFDLLAKFADYGFNKSHAAAYAIISYQTAYMKAH 792 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 + VEFLAASM+ +M N EK+ F ++A + I+++ P V T F+VG N IYYSLAAI Sbjct: 793 HSVEFLAASMSYDMTNTEKLNDFRREALRLGIEVIAPCVQTSHRLFEVGKNCIYYSLAAI 852 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGVG HI+ +K F L+DFC R+D + +N+R +ESLV AGA DCF +R LL Sbjct: 853 KGVGEAVVDHIVACRGNKVFKDLKDFCERIDPRIVNKRAMESLVCAGAFDCFNIAREVLL 912 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 SL + A + N + ++F G + + L + S + + + E +V+GFY Sbjct: 913 ASLGTLHARALRIFDNNFSGQVDMFG-IAGGLKEPLILSQASPWSPAEKLYREFQVIGFY 971 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020 FS HPLD Y+ IL K I+ + ++G RLA VV+KQ +KT+ G ++G + F Sbjct: 972 FSAHPLDEYQAILAKKRIQTWVNFANAVKGGATVARLAGTVVAKQVRKTKSGKKMGIIHF 1031 Query: 1021 SEPAKEYEANFF 1032 S+ + +YE F Sbjct: 1032 SDTSGQYETILF 1043 >gi|319407174|emb|CBI80813.1| DNA polymerase III alpha subunit [Bartonella sp. 1-1C] Length = 1140 Score = 1142 bits (2955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 576/1025 (56%), Positives = 745/1025 (72%), Gaps = 12/1025 (1%) Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75 +HS+YSLLEGAL + I+ +D+ PAIAITDTNNLF ALEFSQ + GIQPIIGCQL Sbjct: 1 MHSAYSLLEGALKIKQIIQHAISDRMPAIAITDTNNLFGALEFSQYCFSDGIQPIIGCQL 60 Query: 76 DIDMQD---NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 ID D N +T + SIVL ++ GY L+ LVSR YL I Sbjct: 61 AIDFGDENCNSPLTKLRHSS--DYSSIVLFAASETGYSHLVRLVSRAYLDKNDTDLPHIK 118 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 +L EG+I LTGG GPI+ A + + A +RL KK+FGDRLY+ LQRH Y Sbjct: 119 ADFLLR-HHEGIIALTGGPGGPINSALTEDKKERAIERLTYLKKIFGDRLYIELQRHGSY 177 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 DR E +++LAYT+E+PLVATN + FL++E Y AHD LMAVA VVS +R RVT DH Sbjct: 178 DRKVEEALIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGKVVSNPNRKRVTLDH 237 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENE 310 YLK++ EMVS+F DLPEALEN+VEIA RC + PILP FIE+ D + + E E Sbjct: 238 YLKSQDEMVSLFFDLPEALENSVEIALRCHAYAPIRKPILPGFIERSADTSSVLEAEAKE 297 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 L ++A AGL++RL +A+GY DY QRL++E++VI RM+FSGYFLIV+DFI+WAK + Sbjct: 298 LLDQAKAGLKMRLETIGLAEGYTIADYEQRLNYEISVITRMQFSGYFLIVSDFIKWAKAH 357 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+RR+EV Sbjct: 358 DIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQERREEV 417 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL- 489 IRYVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY VD L KL+P P + L Sbjct: 418 IRYVQQKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRLVDYLTKLVPATPGSNIELA 477 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 QAI D+ +F E + DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPMYRD Sbjct: 478 QAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPMYRDP 537 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 RSD+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP +D TY Sbjct: 538 RSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIPLNDEATY 597 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 +++ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN RK+ +E Sbjct: 598 AMMSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENISTYNIRKHKEE 657 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +I SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +EM +Q+ Sbjct: 658 EITSIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKEMQEQR 717 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 RF+SGA G+ K A IF+LLAKFADYGFNKSHA AYA++SY TA+MK H+PVEFLA Sbjct: 718 ARFVSGAVDGGLDKEQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAHHPVEFLA 777 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 ASMT +M N +K+ F ++A + I+++ P V T F+VG+N IYYSL+A+KGVG Sbjct: 778 ASMTYDMTNTDKLNDFRREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKGVGDMV 837 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 HI+ DKPF LEDFC R+D + +N+R +ESL++AGA DCF +R LL SL + Sbjct: 838 VDHIVACRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLLASLVTLN 897 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 A + N ++ +IF G + + L + S + + + E +V+GFYFS HPL Sbjct: 898 ARALRILDNNSSGQVDIF-EMVGGLKEPLILSQASPWSVAEKLHYEFQVIGFYFSAHPLS 956 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 Y+ +L K ++ + A+++G RLA VV+KQ +KT+ G ++G + FS+ + +Y Sbjct: 957 EYQDVLIKKRVQTWNNFAASVKGGATAARLAGTVVAKQIRKTKSGKKMGVIQFSDTSGQY 1016 Query: 1028 EANFF 1032 EA F Sbjct: 1017 EAVIF 1021 >gi|298291824|ref|YP_003693763.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506] gi|296928335|gb|ADH89144.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506] Length = 1149 Score = 1138 bits (2943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/1027 (54%), Positives = 739/1027 (71%), Gaps = 17/1027 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHSS+SLLEGAL++ + + D+QPAIA+TDT NLF ALEFS+K +GIQP Sbjct: 12 GFVHLHVHSSFSLLEGALTIGKLAELAKKDRQPAIALTDTGNLFGALEFSEKMAGSGIQP 71 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC L +D G+ P +VLL + EG++ L+ELVSR +L + Sbjct: 72 ILGCALSVDFPGPAPRGPAGQQ----RPRVVLLAMSEEGWKNLMELVSRSFLDTASDGAP 127 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I L WL E T GLI LTGG SGPIDRA S AE+RL T +LFGDRLYV +QRH Sbjct: 128 HIKLDWL-EGRTGGLIALTGGPSGPIDRALAAGSHDQAEQRLHTLAELFGDRLYVEIQRH 186 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R E+ +++LAY +LPLVATN F ++DYEAHD L+ +A +V++ DR ++ Sbjct: 187 GVAEERRVETALIELAYRLDLPLVATNEPFFAGQDDYEAHDALICIAEGRLVAEGDRRQL 246 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 TP+H + R+EM+++F+DLPEAL NTVEIARRC++ + PILPRF ++++E Sbjct: 247 TPEHRFRTRAEMMALFADLPEALANTVEIARRCAYRPRTVKPILPRFT------MERDEA 300 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ELR +A GL RLA A G +DY RL FEL++I +MKF GYFLIV+DFI+WAK Sbjct: 301 EELRVQAEEGLRKRLAVHGPAPGLAEKDYEDRLAFELSIIEKMKFPGYFLIVSDFIKWAK 360 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 IPVGPGRGSGAGS+ AY+LTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ+RRD Sbjct: 361 AQGIPVGPGRGSGAGSLVAYSLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQERRD 420 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVIRYVQ +YG ++VAQIITFG+LQA+ LRDVGR L+MPY QVD+LCKL+P +PA+PV+ Sbjct: 421 EVIRYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNPANPVT 480 Query: 489 L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L QAI + R + +P V R +I+ KLEGL RHASTHAAGIVIGDR LS LVP+YR Sbjct: 481 LTQAIEGEPRLQAESEQNPVVKRAFDIATKLEGLNRHASTHAAGIVIGDRKLSNLVPLYR 540 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D RSD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT+LQ ++ +AQ G+++DLS IP +D + Sbjct: 541 DPRSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTVLQTAVRLVAQLGIQLDLSTIPLNDEK 600 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +LT T+G+FQ+ESSGMR+AL M+PD +EDIIALV+LYRPGP+ NI VY KNG Sbjct: 601 TYAMLTRGETVGVFQVESSGMRRALVDMKPDRLEDIIALVALYRPGPMANIPVYCAVKNG 660 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 E+ V HP ++ LKET GVIIYQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EMDK Sbjct: 661 HEQAVYAHPALESSLKETYGVIIYQEQVMQIAQTLSGYSLGEADLLRRAMGKKIRAEMDK 720 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+ERF+SGA + G++K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK +Y EF Sbjct: 721 QRERFVSGAVERGVAKAKASEIFDLLAKFADYGFNKSHAAAYALVSYQTAYMKANYATEF 780 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 LAASMTL+M N +K+ +F Q+A++ I+++PPSVN +F V + RI Y+LAAIKGVG Sbjct: 781 LAASMTLDMGNTDKLAEFRQEAQRLGIEVVPPSVNHSGREFAVKEGRILYALAAIKGVGV 840 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 I+EA D+PF SL DF +R+++K LN+R +ESLV AGA D +R + ++D+ Sbjct: 841 HAVEAIVEARGDRPFASLSDFAARINAKALNKRTMESLVNAGAFDALEPNRARAAAAIDS 900 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 I +A V N+F + ++ + + + + + E +GF+ +GHP Sbjct: 901 ILAHAASVGAEAAIGQGNMFGGPAA--ATELPIPNATPWLPAEKLQREYDAIGFFLTGHP 958 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y L ++ ++ + + ++R +I RLAA VVS+Q+++T+ G+++G V S+P+ Sbjct: 959 LDEYGKALDRLRVQRWSDFTRSVRAGSIAGRLAATVVSRQERRTKTGNKMGIVGLSDPSG 1018 Query: 1026 EYEANFF 1032 ++EA F Sbjct: 1019 QFEAVLF 1025 >gi|328543710|ref|YP_004303819.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1] gi|326413454|gb|ADZ70517.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1] Length = 1146 Score = 1120 bits (2897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 568/1029 (55%), Positives = 728/1029 (70%), Gaps = 12/1029 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+VHS+ SLLEGAL + +LD AD QPA+AITDT NLF A EFS KA AGIQP Sbjct: 5 GFVHLRVHSALSLLEGALPIKKLLDLAKADAQPALAITDTGNLFGAQEFSGKAWGAGIQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGCQL + D +G+ P V VLL ++ GY L+EL SR YL Sbjct: 65 IIGCQLAVAFDDGGGEDRRGEPPLLDV---VLLAASEAGYGNLMELSSRAYLDTATGLKP 121 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + L+E + GLI+LTGG +GPI RA + +AE RL F +R YV LQRH Sbjct: 122 HVPAALLEE-KSGGLILLTGGVNGPIGRALLAGNRTLAEARLKRLAAAFPNRTYVELQRH 180 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R E ++LAY LPLVATN + F EDYEAHD L+ +A V+ ++DR ++ Sbjct: 181 GMAEERRCEPGFLELAYELGLPLVATNEAFFPKREDYEAHDALICIAEGRVLIEEDRRKL 240 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 TP+HY K+R+EM+ +F DLPEA NTVEIARRC + PILPRF + + + +K Sbjct: 241 TPEHYFKSRAEMLELFCDLPEATANTVEIARRCHYRPLRRDPILPRFAGADADPEAAEKA 300 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E ELR +A GL+ RL +A G QDY RLD+EL VI RMKF GYFLIVADFI+W Sbjct: 301 EAEELRRQARDGLKARLEAHGLAPGLGQQDYWDRLDYELGVIERMKFPGYFLIVADFIKW 360 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK ++IPVGPGRGSGAGSV A+ALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ R Sbjct: 361 AKAHDIPVGPGRGSGAGSVVAWALTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQYR 420 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVIRYVQ KYG +VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+P Sbjct: 421 REEVIRYVQEKYGRRQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANP 480 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L QAI D+ R REA + VDRLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+ Sbjct: 481 VTLAQAIGDEPRLREAAREEEIVDRLLTMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPL 540 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RSD+PV QFNMK +E AGL+KFDFLGLKTLT++ ++ +A++GV VD++ +P DD Sbjct: 541 YRDPRSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIARKGVTVDMASVPLDD 600 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 TY LL T+G+FQLES GMR+A+ GM+PD EDIIALV+LYRPGP++NI VYN K Sbjct: 601 ARTYQLLARGETVGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVK 660 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+++ +HPL++P+LKET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI EM Sbjct: 661 HGEQEADYLHPLLEPILKETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEM 720 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 + Q+ RF+ GA + G+ + A IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PV Sbjct: 721 EVQRARFVDGAVERGVDRDQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHPV 780 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+AASMTL++ N +K+ F Q+AR+ I I+PPS+N F V D RI Y+L AIKGV Sbjct: 781 EFMAASMTLDLGNTDKLGDFRQEARRMGIAIVPPSINRSMHPFDVDDGRIVYALGAIKGV 840 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G +HI+EA +PF SL DF RV + LN+R LESL AGA D +R ++L+ L Sbjct: 841 GEQAVQHIVEARGTQPFRSLGDFARRVSPRFLNKRTLESLAAAGAFDDLEPNRARVLEGL 900 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D I AQ E+N +F + + L + + + R + E +GFY S Sbjct: 901 DRIIGIAQRTEENSVLGQNELFGGG--GEEEDLHLPEVAAWMPAERLQREHAAIGFYLSS 958 Query: 966 HPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD Y+P+L +M ++ + + S A RG + RLA V+S+Q++KT+ G+R+G V S+ Sbjct: 959 HPLDEYQPLLERMRVQSWAQFSEAVKRGASAGRLAGTVISRQERKTKSGNRMGIVRLSDA 1018 Query: 1024 AKEYEANFF 1032 + ++EA F Sbjct: 1019 SGQFEALLF 1027 >gi|118590015|ref|ZP_01547419.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614] gi|118437512|gb|EAV44149.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614] Length = 1154 Score = 1115 bits (2883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/1029 (54%), Positives = 729/1029 (70%), Gaps = 14/1029 (1%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +VHL+VHS+ SLLEGAL + +LD AD QPA+AI DTNNLF A EF+ KA AGIQPI Sbjct: 14 YVHLRVHSALSLLEGALPIKKLLDLAKADDQPALAIADTNNLFGAQEFATKAWGAGIQPI 73 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 CQL + D L+ +G+ P + +VLL T GY L+EL SR +L + Sbjct: 74 AACQLSVFFDDGLESGRRGE---PALSDVVLLAMTEAGYGNLMELSSRAFLDTETGLRPH 130 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + +L +EG+I+LTGG GPI A +A+ RL T F R YV +QRH Sbjct: 131 VSSGYLLS-KSEGVIVLTGGVGGPIGAALLAGRKDLAKSRLQTLADRFQGRCYVEIQRHG 189 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +R E + LAY H LPLVATN + F EDYEAHD L+ ++ V+ + DR R+T Sbjct: 190 MEAERKTEDAFLDLAYEHGLPLVATNEAFFPRREDYEAHDALICISEGRVLIEDDRRRLT 249 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEE 307 P+HY K+R+EM ++F+DLPEALE+TVEIARRCSF APILPRF + D + +K E Sbjct: 250 PEHYFKSRAEMCALFADLPEALESTVEIARRCSFRPLKRAPILPRFAGADADPEEAEKAE 309 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL +A GL RL +A G +DY RLD+E +I RMKF GYFLIVADFI+WA Sbjct: 310 AEELIRQAREGLRARLDVHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWA 369 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR Sbjct: 370 KAQDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQTRR 429 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVIRYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV Sbjct: 430 EEVIRYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPV 489 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L QAI ++ R REA + V+RLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+Y Sbjct: 490 TLGQAIEEEPRLREAAKEEEIVERLLGMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLY 549 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD RSD+PV QFNMK +E+AGL+KFDFLGLKTLT++ ++ + +RG+ VD++ +P DD Sbjct: 550 RDPRSDMPVAQFNMKMVEEAGLVKFDFLGLKTLTVIDTAVKLIERRGIDVDVAALPIDDE 609 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY LL T G+FQLES GMR+A+ GM+PD EDIIALV+LYRPGP++NI VYN K+ Sbjct: 610 KTYQLLARGETFGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKH 669 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G++ +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI EM+ Sbjct: 670 GEQDPDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEME 729 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ RF+ GA + GI+K+ A IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PVE Sbjct: 730 VQRARFVDGAVERGINKSHAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHPVE 789 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+AASMTL++ N EK+ + Q+AR+ I+I PPS+N V F V D +I Y++ AIKGVG Sbjct: 790 FMAASMTLDLGNTEKLGDYRQEARRMKIEIEPPSINRGQVYFDVADGKILYAMGAIKGVG 849 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 HI+E DKPF SL DF R+ K LN+R LE+LV AGA D +R ++ + LD Sbjct: 850 EQAVEHIVEVRGDKPFKSLGDFARRISPKALNKRTLENLVAAGAFDELEPNRARVFEGLD 909 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSG 965 I AQ E+N+T + +F G S++ + L++ + + + E +GFY S Sbjct: 910 RIMGLAQRTEENKTLGQDELFG---GCDSEEPLQLDEVHGWTNEEKLQREHSAIGFYLSA 966 Query: 966 HPLDVYKPILRKMGIKGYEE-SVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HP+D Y +L KM ++ + + S A +G ++ RLA VVS Q++KT+ G+R+G V S+ Sbjct: 967 HPIDEYAAVLEKMRVQPWSQFSEAVKKGASHGRLAGTVVSMQERKTKTGNRMGIVRLSDA 1026 Query: 1024 AKEYEANFF 1032 +YEA F Sbjct: 1027 TGQYEALLF 1035 >gi|154248204|ref|YP_001419162.1| DNA polymerase III subunit alpha [Xanthobacter autotrophicus Py2] gi|154162289|gb|ABS69505.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2] Length = 1150 Score = 1110 bits (2871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/1029 (52%), Positives = 728/1029 (70%), Gaps = 11/1029 (1%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL VHSSYSLLEGALS+ + D + AD QPAIA+TDT NLF ALEFS+K AGIQ Sbjct: 4 PGFIHLHVHSSYSLLEGALSIGKLADLVKADAQPAIALTDTGNLFGALEFSEKMSGAGIQ 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L +D+ + + P P IVLL + G++ L+ LVSR +L + Sbjct: 64 PIAGVSLALDLPEPAGPRGAIR---PKRPRIVLLAQSEPGWRNLMRLVSRSFLETASEDE 120 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI WL + +GLI LTGG +GPID+A ++A +RL LFGDRLYV +QR Sbjct: 121 PRILPDWLAD-AHDGLIALTGGPAGPIDKALVSGHPELAAERLDLLASLFGDRLYVEVQR 179 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +R E+ +++LAY LPLVA+N F S+ DYEAHD L+ +A ++S+ DR R Sbjct: 180 HDTDAERLAEAGLLELAYAKGLPLVASNEPFFASKTDYEAHDGLLCIAEGRLLSEGDRRR 239 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQKE 306 +TP+H K R+EM+++F+DLPEA NTVEIARRC++ ++ PILPRF D D E Sbjct: 240 LTPEHRFKTRAEMLALFADLPEATANTVEIARRCAYRVRTVKPILPRFTSGGGDGDPLAE 299 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E EL +A GL RL + A G Y +RL +EL+VI +MKF GYFLIV+DFI+W Sbjct: 300 EAAELERQAKEGLAQRLEKHGPAPGLDIATYEERLAYELSVITKMKFPGYFLIVSDFIKW 359 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK ++IPVGPGRGSGAGS+ AY+L ITD+DP+RF LLFERFLNPDR+SMPDFD+DFCQ+R Sbjct: 360 AKAHDIPVGPGRGSGAGSLVAYSLQITDLDPIRFGLLFERFLNPDRVSMPDFDVDFCQER 419 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YVQ +YG +VAQIITFG+LQA+ LRDVGR L+MPY QVD+LCKL+P +PA+P Sbjct: 420 RDEVIHYVQERYGRAQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNPANP 479 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L QAI D+ R + +R + V R +I+ +LEGL RHASTHAAGIVIGDR L +LVP+ Sbjct: 480 VTLKQAIEDEPRLQASRDQEEVVKRAFDIAVRLEGLNRHASTHAAGIVIGDRKLHELVPL 539 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD +SD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT + K++ + QRG+ +D+S IP DD Sbjct: 540 YRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTIDKAVKLIHQRGIDLDISKIPLDD 599 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY +L T+G+FQ+ES+GMR+AL M+ D +ED+IALV+LYRPGP+ NI VY + K Sbjct: 600 PKTYAMLGKGETVGVFQVESAGMRRALVDMKADRVEDLIALVALYRPGPMANIPVYCDCK 659 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+ K +HP+++P LKET GVIIYQEQVMQIAQ ++GYSL EAD+LRRAMGKKI+ EM Sbjct: 660 HGRAKPDYLHPMLEPYLKETFGVIIYQEQVMQIAQAMAGYSLGEADLLRRAMGKKIRAEM 719 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +KQ+ERF+SG++ GI K A IF+LLAKFADYGFNKSHAAAYA+++YQTAW+K +YP Sbjct: 720 EKQRERFVSGSAGRGIEKAQADTIFDLLAKFADYGFNKSHAAAYAIVAYQTAWLKANYPT 779 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMTL+M N +K+ +F Q+A++ I+++PP++N +F V D +I Y++ AIKGV Sbjct: 780 EFLAASMTLDMGNTDKLAEFRQEAQRLGIEVVPPNINLSAREFAVKDGKIIYAMCAIKGV 839 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G ++ A D+PF S DF SR+ K +N+R LESL+ AG D +R + ++ Sbjct: 840 GGAAVDALVAARGDRPFRSFADFASRLPVKLVNKRTLESLMAAGCFDVLEKNRARAFAAI 899 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 ++I AQ VE N + ++F G + + + + + S R + E +GF+ +G Sbjct: 900 ESIVAEAQRVEANAQSGQNDMFG--SGPSAVSLPIPEVAPWLPSERLQKEYDAIGFFLTG 957 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD Y L+KM ++ + + +R RLAA VVSKQ+++T+ G+R+G V S+P Sbjct: 958 HPLDDYADALKKMRVQSFSDFSRAVRSGAAAGRLAATVVSKQERRTKSGTRMGIVGLSDP 1017 Query: 1024 AKEYEANFF 1032 + YEA F Sbjct: 1018 SGHYEAVIF 1026 >gi|304391642|ref|ZP_07373584.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130] gi|303295871|gb|EFL90229.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130] Length = 1166 Score = 1110 bits (2871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 557/1029 (54%), Positives = 722/1029 (70%), Gaps = 11/1029 (1%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS+YSLLEGA+ L ++ A D QPA+AITD +NLF ALEFS KA G+QPI Sbjct: 23 FVHLHTHSAYSLLEGAVPLAKLMTLAADDDQPALAITDRSNLFGALEFSSKAAKEGLQPI 82 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTV--PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC L++D D + + G T V P++VLL S GYQ LI LVS Y+ + Sbjct: 83 IGCTLEVDFDDEGRGSRSGSTQQAMVAFPTLVLLASDERGYQNLIRLVSLAYMEGAVESR 142 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I + L E +GLI+LTGG+ GPID + A RL FGDRLY+ LQR Sbjct: 143 PHISMGQLVE-HNDGLIILTGGAHGPIDAMIVDDHPTEARARLARLNDAFGDRLYIELQR 201 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 GY RE +++ +AY + +VATN F EDY AHD L+ +A +VS+ DR R+ Sbjct: 202 QAGYSPKREGEILAMAYELGIGIVATNEVFFAKREDYSAHDTLICIAEGRMVSEDDRRRL 261 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 TPDHYLK+ +EM +FSDLPEA++NT IA+RC+F +Q PILP F DD E Sbjct: 262 TPDHYLKSTAEMNVLFSDLPEAIDNTTIIAQRCAFAVQELDPILPFFTGGVGDDPLAAEA 321 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ELR +AV GL+ RLA +A GY + Y +RL+FEL+VI MKF GYFLIVADFI+WAK Sbjct: 322 AELRKQAVDGLKDRLAVHPLADGYTREQYNERLEFELSVIENMKFPGYFLIVADFIKWAK 381 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + IPVGPGRGSGAGS+ A++LTITD+DPL+FSLLFERFLNP+R+SMPDFDIDFCQDRRD Sbjct: 382 EQGIPVGPGRGSGAGSLVAWSLTITDLDPLQFSLLFERFLNPERVSMPDFDIDFCQDRRD 441 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVIRYVQ+KYG ++VAQIITFG+LQA+A LRDVGR LQ+PY QVDRLCK++PN+PA+P Sbjct: 442 EVIRYVQDKYGRDQVAQIITFGTLQARAVLRDVGRVLQLPYGQVDRLCKMVPNNPANPTP 501 Query: 489 L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L +A+ +++ EAR + VD L++IS KLEGLYRHASTHAAGIVIGDRPL QLVP+YR Sbjct: 502 LYRAVVEEAGLIEAR-KEEEVDHLIDISLKLEGLYRHASTHAAGIVIGDRPLDQLVPLYR 560 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D RSD+PVTQFNMKW+EKAGL+KFDFLGLKTLT+++ + ++L +R V+VD+ + DD Sbjct: 561 DPRSDMPVTQFNMKWVEKAGLVKFDFLGLKTLTVIRTAQNYLKERNVEVDVDKLTLDDEA 620 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ +L T+G+FQLES GMR+AL GM+ D EDIIALV+LYRPGP++NI YN RK+G Sbjct: 621 TFKMLQRGETVGVFQLESMGMRKALIGMKADAFEDIIALVALYRPGPMENIPTYNARKHG 680 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +E+ HP I+ +LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI EM+ Sbjct: 681 EEEADYYHPKIEHVLKETQGVIIYQEQVMQIAQILSGYSLGEADMLRRAMGKKIASEMEA 740 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+ RF+ G KN I A IF++LAKFADYGFNKSHAAAYA++SYQTAW+K ++PVEF Sbjct: 741 QRARFVDGCEKNDIKAQQANYIFDVLAKFADYGFNKSHAAAYALLSYQTAWLKANHPVEF 800 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 LA+ MTL+M N +K+ F ++A + I+++ PSVN+ V F V D +I+Y+LAAIKGVG Sbjct: 801 LASLMTLDMGNTDKLNDFYREAVRAKIEVVAPSVNSSQVKFSVKDGKIHYALAAIKGVGA 860 Query: 848 TTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 HI+E D PF SL F SRVD K+LNR++LE+L+ AGA D FG +R +L+ LD Sbjct: 861 QAVAHIVEVRDRDGPFQSLTSFFSRVDPKQLNRKMLENLIHAGAFDGFGPAREELIGGLD 920 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + ++ V +N ++F + G + L K + ++ R + E +GFYFS H Sbjct: 921 RLIGHSVRVAENEAIGISDMFGGDTG--ETDVVLPKVAAWAAAERLQREHAAMGFYFSAH 978 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIR---LAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 PLD Y+ L K+ + + + ++ + L V S Q +KT++G R+G S+ Sbjct: 979 PLDEYQTTLEKLRAQSWADFQLAVKASGQAPGILGGTVSSIQYRKTKRGKRMGIGMLSDA 1038 Query: 1024 AKEYEANFF 1032 ++E F Sbjct: 1039 TGQFEVVLF 1047 >gi|158423315|ref|YP_001524607.1| DNA polymerase III subunit alpha [Azorhizobium caulinodans ORS 571] gi|158330204|dbj|BAF87689.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571] Length = 1144 Score = 1107 bits (2863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/1030 (53%), Positives = 727/1030 (70%), Gaps = 11/1030 (1%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 + P FVHL VHSSYSLLEGAL+L + D AD QPA+A+TDT NLF ALEFS+K AG Sbjct: 2 RDPGFVHLHVHSSYSLLEGALTLGKLADFAKADAQPALALTDTGNLFGALEFSEKMYGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IQPI GC L +D+ + + + P P IVLL + +G++ L+ LVSR YL Sbjct: 62 IQPIAGCSLALDLPEPVAP----RGIVPKKPRIVLLAAREQGWRNLMTLVSRAYLETPDG 117 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + R+ L WL E+ +GLI LTGG +GP+D+A VA RL ++GDRLYV L Sbjct: 118 EEPRVTLDWLSEL-NDGLIALTGGPAGPLDKALVAGHGDVAASRLDQLTAIYGDRLYVEL 176 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QRH +R E ++ LAY LPLVA N F ++ DY AHD L+A+A S ++S+ DR Sbjct: 177 QRHNWDPERIAEPGLLDLAYAKGLPLVAANEPFFGAQSDYNAHDALIAIAESKLLSEGDR 236 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R+TP+H K R+EM+ +F+DLPEA NTVEIA+RC++ ++ PILPRF D Sbjct: 237 RRLTPEHRFKTRAEMLELFADLPEATANTVEIAQRCAYRVRTAKPILPRFTSGGGGDALA 296 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 EE EL +A GL RLA+ A+G + Y +RL +E++VI +MKF GYFLIV+DFI+ Sbjct: 297 EEAAELERQAQEGLAARLAKHGPAEGLDTKIYEERLAYEISVITKMKFPGYFLIVSDFIK 356 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK ++IPVGPGRGSGAGS+ AY+L ITD+DPLRF LLFERFLNPDR+SMPDFD+DFCQD Sbjct: 357 WAKAHDIPVGPGRGSGAGSLVAYSLQITDLDPLRFGLLFERFLNPDRVSMPDFDVDFCQD 416 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI YVQ +YG +VAQIITFG+LQA+ LRDVGR L+MPY QVD+LCKL+P +PA+ Sbjct: 417 RREEVIDYVQKRYGRSQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNPAN 476 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 PV+L QAI ++ R +EAR + V + +I+ +LEGL RHASTHAAGIVIGDRPL +LVP Sbjct: 477 PVTLKQAIEEEPRLQEARDEEEVVKQAFDIAVRLEGLNRHASTHAAGIVIGDRPLHELVP 536 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 +YRD +SD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT + ++ + QRG+ +D+S IP D Sbjct: 537 LYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTITTAVKLIRQRGIDLDISKIPLD 596 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY +L T+G+FQ+ES+GMR+AL M+ D IED+IALV+LYRPGP+ NI VY + Sbjct: 597 DPKTYAMLARGETVGVFQVESAGMRRALVDMKADRIEDLIALVALYRPGPMANIPVYCDC 656 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ + IHP ++P LKET GVIIYQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ E Sbjct: 657 KHGRAEPDYIHPKLEPYLKETFGVIIYQEQVMQIAQALSGYSLGEADLLRRAMGKKIRAE 716 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M+KQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA+++YQTAW+K +Y Sbjct: 717 MEKQRARFVDGAQERGVPKAQADTIFDLLAKFADYGFNKSHAAAYALVAYQTAWLKANYA 776 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EFLAASMTL+M N +K+ +F Q+A++ IQ++PP++N DF V D +I Y++AAIKG Sbjct: 777 TEFLAASMTLDMGNTDKLAEFRQEAQRLGIQVVPPNINLSHRDFAVVDGKIIYAMAAIKG 836 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG ++ + +PF L DF +R K LN+R LE+L AG D +R ++ + Sbjct: 837 VGGHAVDALVASRGKEPFTDLADFANRFPVKHLNKRTLENLAAAGCFDVLEKNRARVFAA 896 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 LD + +AQ VE +R++ ++F G K+ L + R + E +GF+ + Sbjct: 897 LDAVVAHAQRVEADRSSGQNDMFG--SGPVKAKLPLPDAQPWEPAERLKREYDTIGFFLT 954 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 GHPLD Y P L+KM ++ + + +R RLAA VVS+Q++KT+ G+R+G V S+ Sbjct: 955 GHPLDDYAPALKKMRVQQFSDFSRAVRQGAAAGRLAATVVSRQERKTKTGNRMGIVGLSD 1014 Query: 1023 PAKEYEANFF 1032 P+ +EA F Sbjct: 1015 PSGHFEAVLF 1024 >gi|307942140|ref|ZP_07657491.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4] gi|307774426|gb|EFO33636.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4] Length = 1159 Score = 1106 bits (2861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/1028 (53%), Positives = 722/1028 (70%), Gaps = 13/1028 (1%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+ SLLEGAL + +LD +D QPA+ ITDT NLF A EFS KA +GIQPI Sbjct: 20 FVHLRVHSALSLLEGALPIKKLLDLAKSDNQPALGITDTGNLFGAQEFSAKAWGSGIQPI 79 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGCQL I D+++ +G+ P V V++ GY L+EL SR +L Sbjct: 80 IGCQLAIHFSDDVEPERKGELPLCHV---VVIAMDEVGYGNLMELTSRAFLDTDTGLLPH 136 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + +L ++G+I+L+GG SGP+ +A + + A +RL K F DR Y+ +QRH Sbjct: 137 VSAEYLAS-HSDGVILLSGGVSGPLGKALLTGNKKAARERLQFLAKAFSDRFYIEIQRHG 195 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +R ES + LAY LP+VATN + F + EDYEAHD L+ ++ V+ + DR R+T Sbjct: 196 MEAERKTESAFLDLAYEFNLPVVATNEAFFPAREDYEAHDALICISEGRVLIEDDRRRLT 255 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEE 307 P+HY K R+EMV +FSDLPEAL++T+EIARRCS+ PILPRF + D + ++ E Sbjct: 256 PEHYFKTRAEMVDLFSDLPEALQSTLEIARRCSYRPLRRDPILPRFAGADADPEEAERAE 315 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL+ +A GL+ RL +A G +DY RLD+E +I RMKF GYFLIVADFI+WA Sbjct: 316 AEELKRQAREGLQARLDAHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWA 375 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR Sbjct: 376 KAQDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQTRR 435 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVIRYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV Sbjct: 436 EEVIRYVQEKYGRKQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPV 495 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L QAI ++ R REA + VDRLL+++QKLEGLYRHASTHAAG+VIGDRPL QLVP+Y Sbjct: 496 TLGQAIDEEPRLREAAKEEEIVDRLLKMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLY 555 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD RSD+PV QFNMK +E AGL+KFDFLGLKTLT++ ++ + +R K+D++ +P DD Sbjct: 556 RDPRSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIERRAEKIDVAGLPIDDK 615 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY LL T G+FQLES GMR+A+ GM+PD EDIIALV+LYRPGP++NI VYN K+ Sbjct: 616 PTYELLARGETFGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKH 675 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G++++ +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI EM+ Sbjct: 676 GEQEMDCLHPLLEPILSETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEME 735 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ RF+ GA + GI+K A IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PVE Sbjct: 736 IQRARFVDGAVERGINKGQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANFPVE 795 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+AASMTL+M N EK+ F Q+AR+ I ++PPS+N V F V D +I Y++ AIKGVG Sbjct: 796 FMAASMTLDMGNTEKLGDFRQEARRMKIDVVPPSINKSQVYFDVADGKILYAMGAIKGVG 855 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 HI+E D PF L DF R+ K LN+R LE+LV AGA D SR ++L+ LD Sbjct: 856 EQAVEHIVEVRGDTPFKRLGDFARRISPKFLNKRTLENLVCAGAFDELEPSRARVLEGLD 915 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + AQ E+N +F G ++ L + + + + E +GFY S H Sbjct: 916 RVMGLAQRTEENAAIGQNELFG---GGGEQELQLPEVHGWTAEEKLQREHNAIGFYLSAH 972 Query: 967 PLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 PLD Y +L KM ++ + ++ +N RLA V+S+Q++KT+ G+R+G V S+ Sbjct: 973 PLDEYTNLLEKMRVQQWAPFAEAVKKGASNGRLAGTVISRQERKTKTGNRMGIVRLSDST 1032 Query: 1025 KEYEANFF 1032 ++E F Sbjct: 1033 GQFEGLLF 1040 >gi|254505207|ref|ZP_05117358.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia alexandrii DFL-11] gi|222441278|gb|EEE47957.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia alexandrii DFL-11] Length = 1138 Score = 1096 bits (2835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/1026 (53%), Positives = 720/1026 (70%), Gaps = 14/1026 (1%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 ++VHS+ SLLEGAL + +LD AD QPA+AI DTNNLF A EFS KA AGIQPI C Sbjct: 1 MRVHSALSLLEGALPIKRLLDLAKADDQPALAIADTNNLFGAQEFSSKAWGAGIQPITAC 60 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133 QL + D L +G+ P + +VL+ T GY L+EL SR +L + + + Sbjct: 61 QLSVFFDDGLDSGRRGE---PALADLVLIAMTETGYGNLMELTSRAFLDTETGLRPHVSI 117 Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGY 192 S+L + + +I+LTGGS G I +A+ RL T F R YV +QRH Sbjct: 118 SYLLQ-KAQDVIVLTGGSLGAIGAPLLAGRKDLAKSRLKTLDDGFAGRCYVEIQRHGMES 176 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 +R E + LAY LPLVATN + F + EDYEAHD L+ ++ V+ + DR R+TP+H Sbjct: 177 ERKTEEAFLDLAYEMGLPLVATNEAFFPAREDYEAHDALICISEGRVLIESDRRRLTPEH 236 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENE 310 Y K R+EM +F+DLPEAL +T+EIA+RCSF APILPRF + D + ++ E E Sbjct: 237 YFKTRAEMCVLFADLPEALASTIEIAQRCSFRPMTRAPILPRFAGADADPEEAERAETEE 296 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 L+ +A GL+ RL +A G +DY RLD+E +I RMKF GYFLIVADFI+WAK + Sbjct: 297 LKRQAREGLQARLDAHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWAKNH 356 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR+EV Sbjct: 357 DIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQSRREEV 416 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL- 489 IRYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV+L Sbjct: 417 IRYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPVTLG 476 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 QAI D+ R REA + V+RLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+YRD Sbjct: 477 QAIEDEPRLREAAREEEIVERLLGMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLYRDP 536 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 RSD+PV QFNMK +E AGL+KFDFLGLKTLT++ ++ + +RG+ VD++ +P DD ++Y Sbjct: 537 RSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIERRGINVDVASLPIDDRKSY 596 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LLT T G+FQLES GMR+A+ GM+PD EDIIALV+LYRPGP++NI VYN K+G++ Sbjct: 597 ELLTRGETFGVFQLESQGMRRAVAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKHGEQ 656 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI EM+ Q+ Sbjct: 657 EPDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEMEVQR 716 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 RF+ GA + GI+KT A IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++ VEF+A Sbjct: 717 ARFVDGAVERGINKTQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHSVEFMA 776 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 ASMTL+M N EK+ F Q+AR+ I+++PPS+N V F V D +I Y++ A+KGVG Sbjct: 777 ASMTLDMGNTEKLGDFRQEARRMGIEVVPPSINRSQVYFDVSDGKILYAMGAVKGVGEQA 836 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 HI+E PF SL DF R+ K LN+R LE+LV AGA D +R ++ + LD I Sbjct: 837 VEHIVEVRGQTPFQSLGDFARRISPKALNKRTLENLVAAGAFDELEPNRARVFEGLDRII 896 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 AQ E+N+T + +F G+ S++ + L++ S + + E +GFY S HP+ Sbjct: 897 GLAQRTEENKTLGQDELFG---GSDSEEPLQLDEVHGWTSEEKLQREHSAIGFYLSAHPI 953 Query: 969 DVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D Y +L KM + + + ++ + RLA V+S Q++KT+ G+R+G S+ + Sbjct: 954 DEYASVLEKMRAQPWAQFADAVKKGASAGRLAGTVISMQERKTKSGTRMGIARLSDATGQ 1013 Query: 1027 YEANFF 1032 YEA F Sbjct: 1014 YEALLF 1019 >gi|254469239|ref|ZP_05082644.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio sp. JE062] gi|211961074|gb|EEA96269.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio sp. JE062] Length = 1144 Score = 1086 bits (2809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 536/1032 (51%), Positives = 731/1032 (70%), Gaps = 16/1032 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP FVHL+VHS+YSLLEGAL + ++D + D+QPA+AITD+ NLF ALEFS+KA AG+ Sbjct: 3 SPGFVHLRVHSAYSLLEGALPIGKLIDLASKDEQPALAITDSGNLFGALEFSEKAFGAGM 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 QPIIGCQ+ ++ +D ++ V +VLL + EGY+ L++LVSR +L + Sbjct: 63 QPIIGCQVSVNFEDQPDVSGDD-----AVSDLVLLAANEEGYENLMDLVSRAFLDTEPGF 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + +S + + G+I+LTG S GPI+ +A+ RL + FGDRLYV LQ Sbjct: 118 KANVPISRVLN-KSGGVIVLTGASEGPINSQLREGHVDLAKSRLELLQNTFGDRLYVELQ 176 Query: 188 RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 RH +G + E +++ LAY +P+VATN + F + +DYEAHD L+A++ V+ + DR Sbjct: 177 RHNMKGEEDV-EPELLNLAYELNIPIVATNEAFFPNPDDYEAHDALIAISEGRVLVETDR 235 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--IEKECDDI 303 ++TP+H K R +M+ +FSDLPEALEN+V IA+RC + APILPRF + + ++ Sbjct: 236 RQLTPEHCFKTREQMMELFSDLPEALENSVVIAQRCHYRPLKRAPILPRFAGADADAEEA 295 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ E EL +A GL+ RL +A +DY RLD+EL +I RMKF GYFLIVADF Sbjct: 296 ERAEAEELTRQAKEGLQARLDVHGLAPDLEEKDYWDRLDYELGIIIRMKFPGYFLIVADF 355 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFC Sbjct: 356 IKWAKNEDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFC 415 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RR+EVIRYVQ KYG E+VAQIIT+G+LQAKA LRDVGR LQMPY QVDRL KL+P +P Sbjct: 416 QNRREEVIRYVQRKYGREQVAQIITYGTLQAKAVLRDVGRVLQMPYGQVDRLSKLVPGNP 475 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A+P +L +A+ + R REA + VDRLL+++ KLEGLYRHASTHAAG+VIGDRPL QL Sbjct: 476 ANPCTLPEALEQEPRLREAAKQEEVVDRLLKMAMKLEGLYRHASTHAAGVVIGDRPLEQL 535 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD+PV QFNMKW+E AGL+KFDFLGLKTLT++ ++ + +RG++V + IP Sbjct: 536 VPLYRDPRSDMPVAQFNMKWVEAAGLVKFDFLGLKTLTVIDTAVSHIKKRGIEVKIEEIP 595 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD TY LL T+G+FQLES GMR+A+ GM+PD EDI+ALV+LYRPGP+DNI +YN Sbjct: 596 IDDPLTYKLLAAGETVGVFQLESQGMRRAIAGMRPDRFEDIVALVALYRPGPMDNIPIYN 655 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K+G+++ +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 656 AVKHGEQEPDYLHPLLEPILTETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIA 715 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EM+ Q+ RF+ GA + + K A I++L+AKFA+YGFNKSHAAAYA+++YQTAW+K + Sbjct: 716 SEMEIQRARFVEGAVEQKVDKDQAGMIYDLVAKFANYGFNKSHAAAYALVAYQTAWLKAN 775 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVEFLA MTL++ N +K+ F Q+A + I+++PP+VN V F V D +I Y++ AI Sbjct: 776 YPVEFLAGIMTLDLGNTDKLSDFRQEAMRMGIEVVPPNVNKSGVHFDVQDGKIVYAMGAI 835 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGVG HI+E D+PF L DF +R+ K LN+R +E+L+ AGA D +R QLL Sbjct: 836 KGVGEQAVEHIVEVRGDEPFKDLADFATRISPKVLNKRTIENLISAGAFDELNPNRAQLL 895 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 LD I AQ E+N+ + + F + + + L S R + E +GFY Sbjct: 896 DGLDRIIGMAQRTEENKNSGQNDFFGGDNA--PEPLILNPTDPWLPSERLQKEHAAVGFY 953 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020 S HPLD Y+ + K+ ++ +++ +++ + RLA V +KQ++KTR G+++G V Sbjct: 954 ISAHPLDEYRELFTKLRVQLWKDFERSVKAGSSAGRLAGTVTAKQERKTRTGNQMGIVRI 1013 Query: 1021 SEPAKEYEANFF 1032 S+P +YEA F Sbjct: 1014 SDPTGQYEAVMF 1025 >gi|146341074|ref|YP_001206122.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. ORS278] gi|146193880|emb|CAL77897.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. ORS278] Length = 1174 Score = 1079 bits (2791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/1038 (52%), Positives = 717/1038 (69%), Gaps = 21/1038 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VHS+YSLL+G++ + + + AD+QPA+A+TDT+N+F ALEFS K GI Sbjct: 3 SAGFVHLHVHSAYSLLKGSIKIAKLGELAKADRQPALALTDTDNMFGALEFSDKMAGYGI 62 Query: 68 QPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPI GC+L ID D + N G P+ IVLL + EGY+ L+ L SR +L Sbjct: 63 QPIAGCELAIDFGDMDPNARNAGAVAQPS--RIVLLAANEEGYRHLMRLNSRAFLETPTH 120 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q+ I WL E G +GLI LTGG GPI A + + +A +R FGDRLY+ L Sbjct: 121 QAPHIKFDWLTE-GVDGLIALTGGPDGPISLALQHDMAALAAQRCERLAGQFGDRLYIEL 179 Query: 187 QRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 QRH G +R R E ++ +AY LPLVATN F S +DYEAHD L+ +A +++ D Sbjct: 180 QRH-GTERERRVEGGLIDIAYDKGLPLVATNEPYFASTDDYEAHDALLCIAGGHLIADTD 238 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----EKEC 300 R ++TPDH K R+EM +F+DLPEAL +TVEIA RCS+ + PILP F + Sbjct: 239 RVQLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCSYRPRTRKPILPFFTVGAGTGDT 298 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D E EL+ +A GLE RL +A G +DY++RL FEL+VI RMK++GYFLIV Sbjct: 299 VDAASAEAAELKRQAEEGLERRLKVHGMAPGMTEEDYQKRLAFELDVIMRMKYAGYFLIV 358 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+WAK + IPVGPGRGSGAGS+ A+ LTITD+DP+RF+LLFERFLNP+R+SMPDFDI Sbjct: 359 SDFIKWAKAHGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFERFLNPERVSMPDFDI 418 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P Sbjct: 419 DFCQDRRGEVISYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVP 478 Query: 481 NDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 +PA PV+L A I + + + R DP V R +I+ +LEGL RHASTHAAGIVIGDRPL Sbjct: 479 QNPAAPVTLAAAIEGEPKLQAFRDEDPVVARAFDIAMRLEGLTRHASTHAAGIVIGDRPL 538 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 S+LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QR V VDL+ Sbjct: 539 SELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDVHVDLA 598 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P DD +Y +L +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Sbjct: 599 TLPIDDAASYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIP 658 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y RK+G+E+ +HP+++P+LKET GVIIYQEQVMQ+AQ +SGYSL EAD+LRRAMGK Sbjct: 659 TYCARKHGEEEPEYLHPILEPILKETFGVIIYQEQVMQVAQQMSGYSLGEADLLRRAMGK 718 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KI+ EMDKQ+ RF+ GA KNG+ K A IF+LLAKFADYGFNKSHAAAYA++SY TA+M Sbjct: 719 KIRAEMDKQRVRFVEGAVKNGVPKDQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYM 778 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYPVEF+AASMTL+++N +K+ +F +A++ I++ PPS+N F+V N I+Y+L Sbjct: 779 KAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEPPSINRSGPTFEVSGNTIFYAL 838 Query: 840 AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AA+KGVG I+EA + PF SL DF SRV + +N+R++E+L AGA DC +R Sbjct: 839 AALKGVGPQAIEMIVEARNKGGPFTSLADFASRVSPRAINKRIIETLAAAGAFDCLDKNR 898 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQ 956 ++ D I Q + T+ ++F G +D + ++EN + R E Sbjct: 899 ARVFAGADAIVAACQRANEAATSGQNDMF----GNAADAPAIILPNIENWLPAERLRREY 954 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSR 1014 +GF+ SGHPLD Y L+++ ++ + E ++ ++AA VVS+ +++T+ G++ Sbjct: 955 DAIGFFLSGHPLDDYAAALKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNK 1014 Query: 1015 IGWVTFSEPAKEYEANFF 1032 +G + S+P +EA F Sbjct: 1015 MGIMGLSDPTGHFEAVLF 1032 >gi|316933919|ref|YP_004108901.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1] gi|315601633|gb|ADU44168.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1] Length = 1151 Score = 1077 bits (2786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/1033 (52%), Positives = 710/1033 (68%), Gaps = 18/1033 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS+YSLL+G++ + + + AD+QPA+A+TDT+N+F LEFS K +GIQP Sbjct: 5 GFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSGSGIQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L ID D + G P IVLL + +GY+ L+ L SR +L Q Sbjct: 65 IVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETPVNQVP 122 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I L WL + T+G+I LTGG GPI A + + +A +R ++ FGDRLYV LQRH Sbjct: 123 HIKLDWL-DGETDGVIALTGGPDGPISLAMLTDPA-LAAQRCERLQQAFGDRLYVELQRH 180 Query: 190 RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R E ++ LAY LPLVATN F S EDYEAHD L+ +A ++++ DR + Sbjct: 181 GTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDRVQF 240 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE----KECDDIQ 304 TPDH K R+EM +F+DLPEAL +TVEIA+RC++ PILP F + + Sbjct: 241 TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGAGVSDAVEAA 300 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E ELR +A GL RL+ ++ G +DY +RL FEL+VI RMK++GYFLIV+DFI Sbjct: 301 AAEAAELRRQAELGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLIVSDFI 360 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 361 KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 420 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P +PA Sbjct: 421 DRRGEVIEYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 480 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 P++L QAI + + + AR DP V R +I+QKLEGL RHASTHAAGIVIGDRPLS LV Sbjct: 481 APITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV 540 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L ++ L QR + VDL +P Sbjct: 541 PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDLHTLPI 600 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +Y +L +G+FQ+ES+GMR+AL M+PD EDIIALV+LYRPGP+ NI Y Sbjct: 601 DDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTYCA 660 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI+ Sbjct: 661 RKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA 720 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMDKQ+ F+ GA KNG++K A IF+LLAKFADYGFNKSHAAAYA++SY TA+MK HY Sbjct: 721 EMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 780 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTLE+ N +K+ +F +A++ I++ PSVN F+VG N IYY+L +K Sbjct: 781 PVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIYYALGGLK 840 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + I+EA DKPF SL DF +RV+ + +NRRV+E L AGA DC +R + Sbjct: 841 GVGLQAVQQIVEARGDKPFASLADFAARVNPRAINRRVVECLAAAGAFDCLNSNRAAVFA 900 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGF 961 D I Q + T+ ++F G SD I L + S R E +GF Sbjct: 901 GADAIVAACQRNHEAATSGQNDMF----GGLSDVPSIILPQLDAWLPSERLRREYDAIGF 956 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019 + SGHPLD Y L+++ ++ + E ++ ++AA VVS+ +++T+ G+++G + Sbjct: 957 FLSGHPLDDYATALKRLRVQSWNEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIIG 1016 Query: 1020 FSEPAKEYEANFF 1032 S+P +EA F Sbjct: 1017 LSDPTGHFEAVLF 1029 >gi|209885082|ref|YP_002288939.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5] gi|209873278|gb|ACI93074.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5] Length = 1157 Score = 1077 bits (2784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/1033 (52%), Positives = 713/1033 (69%), Gaps = 14/1033 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP F+HL VHS+YSLL+G++ + AD QPA+A+TD +N+F ALEFS+K GI Sbjct: 3 SPGFIHLHVHSAYSLLQGSMKTEKLAALAKADNQPALALTDRDNMFGALEFSEKLAGLGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 QPIIGC L +D D IVLL T + Y+ L+ L SR +L +Q Sbjct: 63 QPIIGCALAVDFGDVDPAARNAAAL--APARIVLLAPTEDSYRSLMRLNSRAFLEMPAQQ 120 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + I WL++ T GLI LTGG GPI +A ++A +R+ LFGDRLY+ LQ Sbjct: 121 TPHIKAEWLEQERT-GLIALTGGPEGPISQALMAEHPELALQRVEKLADLFGDRLYLELQ 179 Query: 188 RHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 RH G D R ES ++ +AY LPLVATN F + EDYE+HD L+ +A ++++ +R Sbjct: 180 RH-GLDSERRIESALIDIAYGKGLPLVATNEPYFATVEDYESHDALLCIAGGRLLAETER 238 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDI 303 +TPDH K R+EM +F+DLPEAL +TVEIA+RC+F + PILP F D Sbjct: 239 AHLTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAFRPRKRKPILPHFTVDSDHMADA 298 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +E EL+ +A GL RL +A+G +DYR RL +E++VI RM +SGYFLIV+DF Sbjct: 299 VSKENAELQKQAEEGLARRLKAHGLAEGKTEEDYRTRLAYEMSVITRMNYSGYFLIVSDF 358 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK IPVGPGRGSGAGS+ AYALTITD+DPLRF+LLFERFLNP+R+SMPDFDIDFC Sbjct: 359 IKWAKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRFALLFERFLNPERVSMPDFDIDFC 418 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRR EVI YVQ +YG + VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P +P Sbjct: 419 QDRRGEVIDYVQRRYGADHVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNP 478 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A PV+L +AI + + + R DP V R +I+Q+LEGL RHASTHAAGIVIGDRPLS+L Sbjct: 479 AAPVTLAKAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSEL 538 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L Q + VDL+ +P Sbjct: 539 VPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQSNIHVDLAHLP 598 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY +LT +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Y Sbjct: 599 LDDKQTYDMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYC 658 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI+ Sbjct: 659 ARKHGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIR 718 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EM+KQ+ RF+SG+ ++ ISK+ A IFELLAKFADYGFNKSHAAAYA++SYQTA+MK H Sbjct: 719 AEMEKQRVRFVSGSVEHSISKSQADQIFELLAKFADYGFNKSHAAAYALVSYQTAYMKAH 778 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVEF+AASMTL+ N +K+ +F +A++ I++ PPS+N F VG+N I+YSLAA+ Sbjct: 779 YPVEFIAASMTLDTGNTDKLSEFRAEAQRLGIKVEPPSINRSEGTFTVGENTIFYSLAAL 838 Query: 843 KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 KGVGT I+EA + PF SL DF +RV + +N+RVLESL AGA D +R + Sbjct: 839 KGVGTHAVDMIVEARKNGGPFTSLSDFAARVPPRAINKRVLESLAAAGAFDTIEPNRAAV 898 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 D I Q + ++F + G ITL + R + E +GF Sbjct: 899 FAGADAILAACQRSHEEAVLGQSDMFGGQTG--GPVITLPHVEPWLPAERLQREYGAVGF 956 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019 + SGHPLD YK +L+++ ++ + E + ++ ++AA VVS+ +++T+ G+++G + Sbjct: 957 FLSGHPLDDYKVVLQRLNVQSWAEFASAVKNGRTAGKVAATVVSRMERRTKTGNKMGIIG 1016 Query: 1020 FSEPAKEYEANFF 1032 S+P +EA F Sbjct: 1017 LSDPTGHFEAVLF 1029 >gi|192291642|ref|YP_001992247.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris TIE-1] gi|192285391|gb|ACF01772.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris TIE-1] Length = 1151 Score = 1073 bits (2774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 536/1033 (51%), Positives = 712/1033 (68%), Gaps = 18/1033 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS+YSLL+G++ + + + AD+QPA+A+TDT+N+F LEFS K GIQP Sbjct: 5 GFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSGYGIQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L ID D + G P IVLL + +GY+ L+ L SR +L Q Sbjct: 65 IVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETPVNQVP 122 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L WL E T+G+I LTGG GPI A + + +A +R ++ FGDRLYV LQRH Sbjct: 123 HVKLEWL-EGETDGVIALTGGPDGPISLAMLTDPA-LAAQRCERLQQAFGDRLYVELQRH 180 Query: 190 RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R E ++ LAY LPLVATN F S EDYEAHD L+ +A ++++ DR + Sbjct: 181 GTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDRVQF 240 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEE 307 TPDH K R+EM +F+DLPEAL +TVEIA+RC++ PILP F + D + Sbjct: 241 TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSDAAEAA 300 Query: 308 ENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E LR +A GL RL+ ++ G +DY +RL FEL+VI RMK++GYFLIV+DFI Sbjct: 301 AAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLIVSDFI 360 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 361 KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 420 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR EVI YVQ++YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P +PA Sbjct: 421 DRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 480 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 P++L QAI + + + AR DP V R +I+QKLEGL RHASTHAAGIVIGDRPLS LV Sbjct: 481 APITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV 540 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L ++ L QR + VDL +P Sbjct: 541 PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDLHTLPI 600 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +Y +L +G+FQ+ES+GMR+AL M+PD EDIIALV+LYRPGP+ NI Y Sbjct: 601 DDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTYCA 660 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI+ Sbjct: 661 RKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA 720 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMDKQ+ F+ GA KNG++K A IF+LLAKFADYGFNKSHAAAYA++SY TA+MK HY Sbjct: 721 EMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 780 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTLE+ N +K+ +F +A++ I++ PSVN F+VG N I+Y+LA +K Sbjct: 781 PVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYALAGLK 840 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + I+EA D+PF SL DF +RV+ + +N+RV+E L AGA DC +R ++ Sbjct: 841 GVGMQAVQQIVEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNRARVFG 900 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGF 961 D I Q + T+ ++F G SD I L + + R E +GF Sbjct: 901 GADAIVAACQRNHEAATSGQNDMF----GGLSDAPSIILPQLEPWLPAERLRREYDAIGF 956 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019 + SGHPLD Y L+++ ++ + E ++ ++AA VVS+ +++T+ G+++G + Sbjct: 957 FLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIIG 1016 Query: 1020 FSEPAKEYEANFF 1032 S+P +EA F Sbjct: 1017 LSDPTGHFEAVLF 1029 >gi|39935989|ref|NP_948265.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris CGA009] gi|39649843|emb|CAE28365.1| DNA polymerase III alpha subunit [Rhodopseudomonas palustris CGA009] Length = 1151 Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 535/1033 (51%), Positives = 712/1033 (68%), Gaps = 18/1033 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS+YSLL+G++ + + + AD+QPA+A+TDT+N+F LEFS K GIQP Sbjct: 5 GFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSGYGIQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L ID D + G P IVLL + +GY+ L+ L SR +L Q Sbjct: 65 IVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETPVNQVP 122 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L WL E T+G++ LTGG GPI A + + +A +R ++ FGDRLYV LQRH Sbjct: 123 HVKLEWL-EGETDGVVALTGGPDGPISLAMLTDPA-LAAQRCERLQQAFGDRLYVELQRH 180 Query: 190 RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R E ++ LAY LPLVATN F S EDYEAHD L+ +A ++++ DR + Sbjct: 181 GTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDRIQF 240 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEE 307 TPDH K R+EM +F+DLPEAL +TVEIA+RC++ PILP F + D + Sbjct: 241 TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSDAAEAA 300 Query: 308 ENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E LR +A GL RL+ ++ G +DY +RL FEL+VI RMK++GYFLIV+DFI Sbjct: 301 AAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLIVSDFI 360 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 361 KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 420 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR EVI YVQ++YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P +PA Sbjct: 421 DRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 480 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 P++L QAI + + + AR DP V R +I+QKLEGL RHASTHAAGIVIGDRPLS LV Sbjct: 481 APITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV 540 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L ++ L QR + VDL +P Sbjct: 541 PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDLHTLPI 600 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +Y +L +G+FQ+ES+GMR+AL M+PD EDIIALV+LYRPGP+ NI Y Sbjct: 601 DDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTYCA 660 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI+ Sbjct: 661 RKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA 720 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMDKQ+ F+ GA KNG++K A IF+LLAKFADYGFNKSHAAAYA++SY TA+MK HY Sbjct: 721 EMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 780 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTLE+ N +K+ +F +A++ I++ PSVN F+VG N I+Y+LA +K Sbjct: 781 PVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYALAGLK 840 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + I+EA D+PF SL DF +RV+ + +N+RV+E L AGA DC +R ++ Sbjct: 841 GVGMQAVQQIVEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNRARVFG 900 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGF 961 D I Q + T+ ++F G SD I L + + R E +GF Sbjct: 901 GADAIVAACQRNHEAATSGQNDMF----GGLSDAPSIILPQLEPWLPAERLRREYDAIGF 956 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019 + SGHPLD Y L+++ ++ + E ++ ++AA VVS+ +++T+ G+++G + Sbjct: 957 FLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIIG 1016 Query: 1020 FSEPAKEYEANFF 1032 S+P +EA F Sbjct: 1017 LSDPTGHFEAVLF 1029 >gi|90423933|ref|YP_532303.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB18] gi|90105947|gb|ABD87984.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB18] Length = 1185 Score = 1071 bits (2769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 537/1035 (51%), Positives = 702/1035 (67%), Gaps = 20/1035 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS+YSLL G++ + + + AD QPA+A+TDT+N+F ALEFS+K GIQP Sbjct: 23 GFVHLHVHSAYSLLRGSIKVAKLCELAKADHQPALALTDTDNMFGALEFSEKMAGYGIQP 82 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC+L +D D + P+ IVLL + GY+ LI+L SR +L Q+ Sbjct: 83 IVGCELAVDFGDQDPNARNALSAAPS--RIVLLAARERGYRSLIKLNSRAFLETPVNQTP 140 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I L WL E LI L+GG GPI AF + + +AE R LFGDRLY+ LQRH Sbjct: 141 HIKLDWLNG-EAEDLIALSGGPEGPISLAFTADQAGLAEARCDRLAALFGDRLYIELQRH 199 Query: 190 RGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G D R E+ ++ LAY LPLVATN F + +DYEAHD L+ +A +V++ DRP+ Sbjct: 200 -GVDAERRAEAALIDLAYAKGLPLVATNEPYFATNDDYEAHDALLCIAGGRLVAETDRPQ 258 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-----EKECDD 302 +TPDH K R+EM +F+DLPEAL +TVEIA RC+F + PILP F Sbjct: 259 LTPDHRFKTRAEMAVLFADLPEALASTVEIAERCAFRPRTRKPILPHFTLGAGTGSHAAA 318 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E +E+R +A GL RL +AKG ++YR RL+FEL +I RM+++GYFLIV D Sbjct: 319 ASSNEADEVRAQAEQGLIKRLQVHGVAKGATEEEYRARLEFELGIITRMQYAGYFLIVGD 378 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK+N IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDF Sbjct: 379 FIKWAKENGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDF 438 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P + Sbjct: 439 CQDRRGEVIEYVQRRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQN 498 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA PV+L QAI + + + R DP V R I+Q+LEGL RHASTHAAGIVIGDRPLS+ Sbjct: 499 PAAPVTLKQAIESEPKLQAFRDEDPVVARAFNIAQRLEGLTRHASTHAAGIVIGDRPLSE 558 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L ++ L QRGV V L + Sbjct: 559 LVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRGVVVSLPTV 618 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +T+ +L +G+FQLES GMR+AL M+PD EDIIALV+LYRPGP+ NI Y Sbjct: 619 PLDDPDTFAMLGRGDVVGVFQLESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTY 678 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+G E+ +HP+++ +LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI Sbjct: 679 CARKHGDEEPEYLHPILESILKETFGVIIYQEQVMQIAQVMAGYSLGQADLLRRAMGKKI 738 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 + EM+KQ+ FI+G+ ++G+ K A IFELLAKFADYGFNKSHAAAYA++SY TA+MK Sbjct: 739 RAEMEKQRAGFIAGSVEHGVPKAQADAIFELLAKFADYGFNKSHAAAYALVSYHTAYMKA 798 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMTLE+ N +K+ +F +A++ I++ PSVN F+V D IYY+LAA Sbjct: 799 HYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKLEAPSVNRSGATFEVADGVIYYALAA 858 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 +KGVG I+E F SL DF ++V K +N+RV+ESL AGA D +R + Sbjct: 859 LKGVGAQAVELIVEGRKGGLFSSLADFAAKVSPKAINKRVIESLAAAGAFDGLNPNRAAV 918 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVL 959 D I Q + ++F G +D I L + + R E + Sbjct: 919 FGGADAIMAACQRHHEAAAMGQNDMF----GGMADAPTIMLPQLEAWLPAERLRREYDAI 974 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGW 1017 GF+ SGHPLD Y L+++ ++ + E ++ ++AA VVS+ +++T+ G+++G Sbjct: 975 GFFLSGHPLDDYATALKRLRVQSWAEFCRAVKSGATAGKVAATVVSRMERRTKTGNKMGI 1034 Query: 1018 VTFSEPAKEYEANFF 1032 + S+P +EA F Sbjct: 1035 LGLSDPTGHFEAVLF 1049 >gi|217977860|ref|YP_002362007.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2] gi|217503236|gb|ACK50645.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2] Length = 1152 Score = 1071 bits (2769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/1036 (51%), Positives = 709/1036 (68%), Gaps = 16/1036 (1%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 E FVHL VHSS+SL EGA+ + + AAD PA+AITD NNLF ALEFS+K Sbjct: 7 EAGLGFVHLHVHSSFSLREGAMGIGKLAKLAAADHMPALAITDGNNLFGALEFSEKLAKE 66 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G+QPIIG +L +D +D ++ +G+ SIVL+ GY L+ LVSR +L + Sbjct: 67 GVQPIIGAELTLDFRDGAAISARGEELGAGRASIVLIAKDEAGYLNLMHLVSRAWLDPEP 126 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + + L+ T G+I L+GG +GP+DRAF S+ A R +LF DRLY+ Sbjct: 127 GDPPHVPIERLRGR-TGGMIALSGGPAGPLDRAFAARRSEQAFARAAQLAELFPDRLYIE 185 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQRH +R E +++ LAY LPLVA N F + DYEAHD L+ +A TV+ Sbjct: 186 LQRHNLAAEREAEPRLLDLAYRKSLPLVAANEPYFGTSSDYEAHDALICIAEGTVIGDGA 245 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R +++P+H K R+EMV++F+DLPEA NTVEIARRC+F P+LPRF Sbjct: 246 RRQLSPEHRFKTRAEMVALFADLPEASRNTVEIARRCAFRPLTRKPLLPRF---SATGEL 302 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E + LR++A AGLE R+ +AKG+ A+DYR+RL FEL+VI +MKF GYFLIV+DFI Sbjct: 303 EAEADALRSEAEAGLEARIEAHGLAKGFTAEDYRKRLAFELDVIVKMKFPGYFLIVSDFI 362 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AK IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 363 KYAKSQGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 422 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRRDEVI YV+ +YG ++VAQIITFGS A+ LR+VGR L+MP QVDRL KL+P +PA Sbjct: 423 DRRDEVIAYVRRRYGADKVAQIITFGSFLARGVLRNVGRVLEMPLGQVDRLAKLVPQNPA 482 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 PVSL QAI + R +EA A+P V ++L+I+Q LEGLY +ASTHAAGIVIGDRPL QLV Sbjct: 483 APVSLKQAIDSEPRLKEAAEAEPRVAKMLQIAQTLEGLYSNASTHAAGIVIGDRPLEQLV 542 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+YRD +SD+P TQFNMKW+E AGL+KFDFLGLKTLT L + L +RG+++++ IP Sbjct: 543 PLYRDPKSDMPATQFNMKWVEPAGLVKFDFLGLKTLTTLSTCVKLLRRRGIEIEIDKIPL 602 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY +L T+G+FQLES+GMR+AL M D EDIIALV+LYRPGP+ NI Y Sbjct: 603 DDSKTYAMLGRGETIGVFQLESAGMRRALVDMHADRFEDIIALVALYRPGPMANIPRYCA 662 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 K G+E+ IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 663 VKAGEEEADYIHPKIEGVLKETFGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKIKA 722 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD Q++RF+ GA NG++K A IF+LLAKFADYGFNKSHAAAYA+I+YQTAW K +Y Sbjct: 723 EMDAQRDRFLRGAIDNGLAKAKANEIFDLLAKFADYGFNKSHAAAYALIAYQTAWFKANY 782 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYS 838 P+EFLAASMTL+ N +K+ +F +AR+ N + PPS+ DF+V G+ +I Y+ Sbjct: 783 PLEFLAASMTLDKANTDKLAEFSNEARRLNGAVEPPSIQRSGADFEVCANDAGELQIRYA 842 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L AIKGVG A ++ A KPF DF +R+D + +N+R+LESLV AGA D R Sbjct: 843 LGAIKGVGQGHAEALVAARNSKPFRDFADFSARIDPRAINKRMLESLVAAGAFDEMEPDR 902 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 ++ +++ I A ++ R +F D++ L K + + R E Sbjct: 903 ARVFAAIETILASAHRRDEERRAGQSALFG---AGAEDRMPLPKVAPWTLAERLRREFDS 959 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIG 1016 +GF+ SGHPLD Y I+ ++ ++ + E ++ RLAA V+ +Q+++T+ GS++G Sbjct: 960 VGFFLSGHPLDAYATIMSRLRVQRWTEFSRAVKLGATGGRLAATVLDRQERRTKSGSKMG 1019 Query: 1017 WVTFSEPAKEYEANFF 1032 V S+P+ +YEA F Sbjct: 1020 IVQLSDPSGQYEAILF 1035 >gi|148255875|ref|YP_001240460.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. BTAi1] gi|146408048|gb|ABQ36554.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. BTAi1] Length = 1173 Score = 1070 bits (2768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 537/1039 (51%), Positives = 715/1039 (68%), Gaps = 22/1039 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VHS+YSLL+G++ + + + AD+QPA+A+TDT+N+F ALEFS K GI Sbjct: 3 SAGFVHLHVHSAYSLLKGSIKIGKLGELAKADRQPALALTDTDNMFGALEFSDKMAGYGI 62 Query: 68 QPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPI GC+L ID D + N P+ IVLL + EGY+ L+ L SR +L Sbjct: 63 QPIAGCELAIDFGDMDPNARNAAAVAQPS--RIVLLAAREEGYRHLMRLNSRAFLDTPTH 120 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q+ I WLQE G +GLI LTGG GPI A + + +A +R LFGDRLY+ L Sbjct: 121 QAPHIKFEWLQE-GVDGLIALTGGPDGPISLAIQHDMAALAGQRCERLASLFGDRLYIEL 179 Query: 187 QRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 QRH G DR R E ++ +AY LPLVATN F + +DYEAHD L+ +A +++ D Sbjct: 180 QRH-GTDRERRVEGGLIDIAYGKGLPLVATNEPYFATADDYEAHDALLCIAGGHLIADTD 238 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R ++TPDH K R+EM +F+D+PEAL +TVEIA RCS+ + PILP F Sbjct: 239 RVQLTPDHRFKTRAEMAVLFADIPEALASTVEIAERCSYRPRTRKPILPFFTVGAGSGAD 298 Query: 305 KEEENE-----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L+ +A GL RL +A G +DY++RL FEL+VI RMK++GYFLI Sbjct: 299 AVDAASAEAAELKRQAEEGLARRLKVHGMAPGMTEEDYQKRLAFELDVITRMKYAGYFLI 358 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V+DFI+WAK + IPVGPGRGSGAGS+ A+ LTITD+DP+RF+LLFERFLNP+R+SMPDFD Sbjct: 359 VSDFIKWAKAHGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFERFLNPERVSMPDFD 418 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+ Sbjct: 419 IDFCQDRRGEVISYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 478 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P +PA PV+L A I + + + R DP V R +I+ +LEGL RHASTHAAGIVIGDRP Sbjct: 479 PQNPAAPVTLAAAIEGEPKLQAFRDEDPVVARAFDIAMRLEGLTRHASTHAAGIVIGDRP 538 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 LS+LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QR V VDL Sbjct: 539 LSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDVHVDL 598 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD +Y +L +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Sbjct: 599 ATLPIDDAASYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMANI 658 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y RK+G+E+ +HP+++P+LKET GVIIYQEQVMQ+AQ +SGYSL EAD+LRRAMG Sbjct: 659 PTYCARKHGEEEAEYLHPILEPILKETFGVIIYQEQVMQVAQQMSGYSLGEADLLRRAMG 718 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KKI+ EMDKQ+ RF+ GA KNG+SK A IF+LLAKFADYGFNKSHAAAYA++SY TA+ Sbjct: 719 KKIRAEMDKQRVRFVEGAVKNGVSKDQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 778 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 MK HYPVEF+AASMTL+++N +K+ +F +A++ I++ PPS+N F+V N I+Y+ Sbjct: 779 MKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEPPSINRSGPTFEVSGNTIFYA 838 Query: 839 LAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 LAA+KGVG I+EA + PF SL DF SRV+ + +N+R++E+L AGA D + Sbjct: 839 LAALKGVGPQAIEMIVEARNKGGPFTSLADFASRVNPRAINKRIIETLAAAGAFDVLDKN 898 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENE 955 R ++ D I Q + T+ ++F G +D + +VEN + R E Sbjct: 899 RARVFAGADAIVAACQRAHEAATSGQNDMF----GNAADAPAIILPNVENWLPAERLRRE 954 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGS 1013 +GF+ SGHPLD Y L+++ ++ + E ++ ++AA VVS+ +++T+ G+ Sbjct: 955 YDAIGFFLSGHPLDDYAAALKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGN 1014 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 ++G + S+P +EA F Sbjct: 1015 KMGIMGLSDPTGHFEAVLF 1033 >gi|75676051|ref|YP_318472.1| DNA polymerase III subunit alpha [Nitrobacter winogradskyi Nb-255] gi|74420921|gb|ABA05120.1| DNA polymerase III, alpha subunit [Nitrobacter winogradskyi Nb-255] Length = 1168 Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/1043 (51%), Positives = 712/1043 (68%), Gaps = 21/1043 (2%) Query: 1 LTQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59 +TQ +P+ FVHL VHS+YSLL+G++ + + + AD QPA+A+TDT+N+F ALEFS Sbjct: 1 MTQKTLAAPAGFVHLHVHSAYSLLKGSIKIQKLAELARADHQPALALTDTDNMFGALEFS 60 Query: 60 QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 K GIQPI+GC+L +D D P IVLL + GY+ L+ L SR Sbjct: 61 DKVAGLGIQPIVGCELAVDFTDQDANARNALPP----ARIVLLATREAGYRNLMRLNSRA 116 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 +L S + WL++ EGLI LTGG GP+ +AF + +A R +FG Sbjct: 117 FLETPEHCSPHVNWEWLRD-ENEGLIALTGGPEGPVAQAFNADQPALATARCDRLAGIFG 175 Query: 180 DRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 DRLYV LQRH G D+ R E ++ LAY LPLVATN F + +DYEAHD L+ +A Sbjct: 176 DRLYVELQRH-GLDKERRVEGALIDLAYAKGLPLVATNEPYFATSDDYEAHDALLCIAGG 234 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI- 296 +V++ DR ++TPDH K R+EM +F+D+PEAL +T+EIA RC+F + PILP F Sbjct: 235 RLVAETDREQLTPDHRFKTRAEMAVLFADIPEALSSTMEIAERCAFRPRTRKPILPHFTV 294 Query: 297 --EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + D + +E ELR +A GL RLA ++ G QDY RLDFEL+VI RM ++ Sbjct: 295 ASDAAAADGKNDEAAELRRQAQEGLAKRLAVHGVSTGMTEQDYSARLDFELDVITRMNYA 354 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIVADFI+ AK IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+S Sbjct: 355 GYFLIVADFIKHAKSKGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERIS 414 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFCQ+RR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+ Sbjct: 415 MPDFDIDFCQERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDK 474 Query: 475 LCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 L KL+P +PA PVSL QAI + + + R DP V R +I+Q+LEGL RHASTHAAGIV Sbjct: 475 LTKLVPQNPAAPVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIV 534 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 IGDRPLS+LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QRG Sbjct: 535 IGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRG 594 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + VDL+ +P DD +Y +LT +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPG Sbjct: 595 IDVDLATLPLDDAASYQMLTQGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPG 654 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+ NI Y RK+G+E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+L Sbjct: 655 PMANIPTYCARKHGEEEAEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLL 714 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKKI+ EM+KQ+ F++G+ NG+ + A IFELLAKFADYGFNKSHAAAYA++S Sbjct: 715 RRAMGKKIRSEMEKQRAIFVAGSVNNGVPRGQAETIFELLAKFADYGFNKSHAAAYALVS 774 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA+MK H+PVEFLAASMTL+M N +K+ +F +A++ I++ PS+N F+V + Sbjct: 775 YQTAYMKAHFPVEFLAASMTLDMSNTDKLSEFRAEAQRLGIKVEAPSINRSGATFEVKEG 834 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+LAA+KGVG I+EA F SL DF +RV + +N+RV+ESL AGA + Sbjct: 835 VICYALAALKGVGAHAVEQIVEARKAGMFTSLADFAARVPPRAINKRVIESLAAAGAFEA 894 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVR 951 +R ++ + I Q + ++F G +D I L + + R Sbjct: 895 LEPNRARVFAGAEAILAACQRSHEATMIGQNDMF----GGLADAPDIMLPRAEPWLPADR 950 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKT 1009 E +GF+ SGHPLD Y L+++ ++ + E ++ ++AA VVS+ +++T Sbjct: 951 LRREYEAVGFFLSGHPLDDYATALKRLRVQSWVEFSRAVKSGATAGKVAATVVSRMERRT 1010 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 + G+++G + S+P+ +EA F Sbjct: 1011 KTGNKMGIIGLSDPSGHFEAVLF 1033 >gi|154253636|ref|YP_001414460.1| DNA polymerase III subunit alpha [Parvibaculum lavamentivorans DS-1] gi|154157586|gb|ABS64803.1| DNA polymerase III, alpha subunit [Parvibaculum lavamentivorans DS-1] Length = 1139 Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/1033 (52%), Positives = 704/1033 (68%), Gaps = 20/1033 (1%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 + P F+HL++HS+YSLLEGA+ + +I A+ PAIA+TDT NLF ALEFS+ Sbjct: 3 DSPPKFIHLRLHSAYSLLEGAIRIKDIPKLCKANGMPAIALTDTANLFGALEFSETLAKE 62 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLD 123 GIQPI GC L + + + + T + P PS + LL GY+ L++L S +L Sbjct: 63 GIQPITGCTLPVLLDTSDEPT---RGPIRREPSGNLALLAKDERGYENLMKLSSLAFLGP 119 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + + ++E EGLI LTGG G ++R A + LL K++FGDRLY Sbjct: 120 DAAEPAHVTMEKVEEF-QEGLICLTGGPDGLVNRLIEAGQPDAAAELLLRLKRIFGDRLY 178 Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 V LQRH ++ E +++LAY HELPLVATN F E +YEAHD L+ +A V Q Sbjct: 179 VELQRHDLPREQIVEGPLIELAYKHELPLVATNEPYFTRESEYEAHDALICIAAGAYVVQ 238 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR R+TP H K++ EM ++F+DLPEA+ENTVEIARRC++ Q PILP+F Sbjct: 239 SDRRRLTPQHRFKSQDEMAALFADLPEAIENTVEIARRCAYRPQTRNPILPKFAAGTS-- 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E +ELR +A GL +RLA A+A ++YR RL+FEL+VI +M F GYFLIVA Sbjct: 297 ----EADELRRQAEEGLTMRLATLEAVAP---EEEYRARLNFELDVIIKMDFPGYFLIVA 349 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK IPVGPGRGSGAGSV A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDID Sbjct: 350 DFIKWAKGQGIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDID 409 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRRDEVIRYVQ +YG ++VAQIITFG LQA+A LRDVGR LQMPY QVDRLCKL+PN Sbjct: 410 FCQDRRDEVIRYVQARYGEDKVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRLCKLVPN 469 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA PV+L +AI + R +E + AD +V +LLEI Q LEGLYRHASTHAAG+VIGDRPL Sbjct: 470 NPAAPVTLPEAIKGEPRLQEEQRADETVAKLLEIGQSLEGLYRHASTHAAGVVIGDRPLD 529 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L +++ LA+R +++DL Sbjct: 530 ELVPLYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDRAVKLLARRDIQIDLLN 589 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P D +T+ +L T+G+FQLESSGMR L ++ D EDIIALV+LYRPGP+DNI Sbjct: 590 LPLADEKTFAMLGRGETIGVFQLESSGMRDVLRKLEADRFEDIIALVALYRPGPMDNIPS 649 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y RK+G EK +HPL++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 650 YVKRKHGTEKPDYLHPLLEPVLKETHGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKK 709 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 IK EM+ QKERF++GA I K A +IFEL+ KFA YGFNKSHAAAYA+++YQTAW+K Sbjct: 710 IKAEMEAQKERFVTGAVAKQIDKAQAASIFELVDKFAGYGFNKSHAAAYALVAYQTAWLK 769 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 ++PVEFLAASM+L++ N +K+ F Q+A + +++ P +N F V D I Y+LA Sbjct: 770 ANHPVEFLAASMSLDLGNTDKLGLFKQEAERLGLKVRRPCINRSEGLFGVADGEILYALA 829 Query: 841 AIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIK VG HI+E + PF L DF R++ + +N+R E+L AGA D +R Sbjct: 830 AIKNVGLQAMEHIVEVRREGGPFRDLFDFARRINPRLINKRTFENLARAGAFDALNPNRA 889 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 Q+L + D + A + R +K +F E G + L R E + Sbjct: 890 QVLAAADLLLGTANVAAQERESKQVGLFGEESGVAAAHPALPAIEPWLPMDRLTEEFNAV 949 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFY SGHPLD Y+ L++ G+ Y E + ++A V +KQ++K++KG+ +++ Sbjct: 950 GFYLSGHPLDDYRTALQRAGVVTYAELLGKT-STAAKIAGTVTAKQERKSKKGNPFAFLS 1008 Query: 1020 FSEPAKEYEANFF 1032 S+P ++E F Sbjct: 1009 LSDPTGQFEIVVF 1021 >gi|85716997|ref|ZP_01047960.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A] gi|85696199|gb|EAQ34094.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A] Length = 1167 Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 530/1033 (51%), Positives = 712/1033 (68%), Gaps = 20/1033 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS+YSLL+G++ + + + AD QPA+A+TDT+N+F ALEFS K GIQP Sbjct: 11 GFVHLHVHSAYSLLKGSIKIQKLAELARADHQPALALTDTDNMFGALEFSDKVAGYGIQP 70 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC+L +D D + P + +VLL + GY+ L+ L SR +L S Sbjct: 71 IVGCELAVDFGDQ---DANARNAIP-LARVVLLATREAGYRNLMRLNSRAFLETPEHCSP 126 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + WL++ EGLI LTGG GP+ AF + S +A R +FGDRLYV LQRH Sbjct: 127 HVSWEWLRD-ENEGLIALTGGPDGPVAMAFNADHSALATARCDQLAMIFGDRLYVELQRH 185 Query: 190 RGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G D+ R E ++ LAY LPLVATN F + +DYEAHD L+ +A +V++ +R + Sbjct: 186 -GLDKERRVEGALIDLAYAKGLPLVATNEPYFATSDDYEAHDALLCIAGGRLVAETEREQ 244 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQ 304 +TPDH K R+EM +F+D+PEAL +T+EIA RC+F + PILPRF + D + Sbjct: 245 LTPDHRFKTRAEMAVLFADIPEALASTIEIAERCAFRPRTRKPILPRFTVASDAGAADGK 304 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 +E ELR +A GL RLA ++ G +DY +RL FEL+VI RM ++GYFLIVADFI Sbjct: 305 NDEAAELRRQAEEGLAKRLAVHGVSTGMTEEDYGKRLGFELDVITRMNYAGYFLIVADFI 364 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AK IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 365 KYAKSKGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 424 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P +PA Sbjct: 425 ERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 484 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 PVSL QAI + + + R DP V R +I+Q+LEGL RHASTHAAGIVIGDRPLS+LV Sbjct: 485 APVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELV 544 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QR + VDL+ +P Sbjct: 545 PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNIHVDLATLPL 604 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +Y +LT +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Y Sbjct: 605 DDAASYQMLTQGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCA 664 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI+ Sbjct: 665 RKHGEEESEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA 724 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM+KQ+ F++G+ K+G+ + A IFELLAKFADYGFNKSHAAAYA++SYQTA+MK HY Sbjct: 725 EMEKQRAIFVAGSVKSGVPQGQAETIFELLAKFADYGFNKSHAAAYALVSYQTAYMKAHY 784 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N +K+ +F +A++ I++ PSVN F+V + I Y+LAA+K Sbjct: 785 PVEFLAASMTLDMSNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVSEGVICYALAALK 844 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG+ I+EA + F SL DF +RV + +N+RV+ESL AGA D +R ++ Sbjct: 845 GVGSHAVELIVEARKNGLFTSLADFAARVPPRAINKRVIESLAAAGAFDALEPNRARVFA 904 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVRFENEQRVLGF 961 + I Q + T ++F G +D I L + + R E +GF Sbjct: 905 GAEAILAACQRSHEAMTLGQNDMF----GGMADAPDILLPRVEPWLPADRLRREYEAVGF 960 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019 + SGHPLD Y L+++ ++ + E ++ ++AA VVS+ +++T+ G+++G + Sbjct: 961 FLSGHPLDDYVTALKRLRVQSWVEFSRAVKAGATAGKVAATVVSRTERRTKTGNKMGIIG 1020 Query: 1020 FSEPAKEYEANFF 1032 S+P +EA F Sbjct: 1021 LSDPTGHFEAVLF 1033 >gi|91977328|ref|YP_569987.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB5] gi|91683784|gb|ABE40086.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5] Length = 1151 Score = 1061 bits (2745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 528/1033 (51%), Positives = 714/1033 (69%), Gaps = 18/1033 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS+YSLL+G++ + + + AD QPA+A+TDT+N+F ALEFS K +GIQP Sbjct: 5 GFVHLHVHSAYSLLKGSMKIARLAELAKADHQPALALTDTDNMFGALEFSDKLAGSGIQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L ID D + N T IVLL + GY+ L+ L SR +L Q Sbjct: 65 IVGLELGIDFGD--QDPNSRNTAVAAPSRIVLLATRERGYRSLMRLNSRAFLETPVNQPP 122 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + TE +I LTGG GPI A + + + R + FGDRLYV LQRH Sbjct: 123 HIKFDWL-DGETEDVIALTGGPDGPISLAMLTDPA-LGRLRCERLAQAFGDRLYVELQRH 180 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++R E+ ++ +AY LPLVATN F + +D+EAHD L+ +A ++++ DR ++ Sbjct: 181 NTDFERRAEAGLIDVAYDMGLPLVATNEPHFATSDDFEAHDALLCIASGKLIAETDRVQL 240 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEE 307 TPDH K R+EM +F+DLPEAL +TVEIA+RC++ PILP F + +D ++ Sbjct: 241 TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVNDAEEAA 300 Query: 308 ENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E LR +A GL R+ +++G +DYR+RL FEL+VI RMK++GYFLIV+DFI Sbjct: 301 AAEAAELRRQAEQGLADRMRIHGLSQGMSEEDYRKRLAFELDVITRMKYAGYFLIVSDFI 360 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 361 KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 420 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P +PA Sbjct: 421 DRRGEVIEYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 480 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 PVSL QAI + + + R DP V R +I+QKLEGL RHASTHAAGIVIGDRPLS LV Sbjct: 481 APVSLKQAIESEPKLQAFRDEDPVVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV 540 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QR + +DL+ + Sbjct: 541 PMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNIHIDLATLGI 600 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D +Y +L +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Y Sbjct: 601 EDAPSYQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCA 660 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI+ Sbjct: 661 RKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRA 720 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM+KQ+ F+ GA++NG+ K A IF+LLAKFADYGFNKSHAAAYA++SY TA+MK HY Sbjct: 721 EMEKQRAIFVEGATRNGVPKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 780 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+AASMTL+++N +K+ +F +A++ I++ PSVN F+VG+N IYY+LA +K Sbjct: 781 PVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEAPSVNRSGPTFEVGENTIYYALAGLK 840 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + I+EA DKPF SL DF +RV+ + +N+RV+ESL AGA DC +R ++ Sbjct: 841 GVGQHAVQMIVEARGDKPFSSLADFAARVNPRAINKRVIESLAAAGAFDCLDPNRARVFA 900 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGF 961 D I Q + T+ ++F G +D I L + + R E +GF Sbjct: 901 GADAIIAACQRSHEAATSGQNDMF----GGLADAPSIVLPQVEPWLPAERLRREYDAIGF 956 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019 + SGHPLD Y L+++ ++ + + ++ ++AA VVS+ +++T+ G+++G + Sbjct: 957 FLSGHPLDDYATALKRLRVQSWSDFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIMG 1016 Query: 1020 FSEPAKEYEANFF 1032 S+P +EA F Sbjct: 1017 LSDPTGHFEAVLF 1029 >gi|92117240|ref|YP_576969.1| DNA polymerase III subunit alpha [Nitrobacter hamburgensis X14] gi|91800134|gb|ABE62509.1| DNA polymerase III, alpha subunit [Nitrobacter hamburgensis X14] Length = 1168 Score = 1061 bits (2745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/1033 (51%), Positives = 706/1033 (68%), Gaps = 20/1033 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS+YSLL+G++ + + + AD QPA+A+TDT+N+F ALEFS K GIQP Sbjct: 11 GFVHLHVHSAYSLLKGSIKIQKLAELAKADHQPALALTDTDNMFGALEFSDKVAGYGIQP 70 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC+L +D D + PF IVLL + GY+ L+ L SR +L Q+ Sbjct: 71 IVGCELAVDFDDQ-DPNARSALPFA---RIVLLATREAGYRNLMRLNSRAFLESALHQTP 126 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL++ EGLI LTGG GP+ AF + S +A R +FGDRLYV LQRH Sbjct: 127 HIKSGWLRD-ENEGLIALTGGPDGPVALAFNADHSALAIARCDQLAGVFGDRLYVELQRH 185 Query: 190 RGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G D+ R E ++ LAY LPLVATN F + +DYEAHD L+ +A +V++ DR + Sbjct: 186 -GLDKERRVEGALIDLAYAKGLPLVATNEPYFAASDDYEAHDALLCIAGGRLVAETDRDQ 244 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQ 304 +TPDH K R+EM +F+D+PEAL +T+EIA RC+F PILP F D + Sbjct: 245 LTPDHRFKTRAEMAVLFADIPEALSSTIEIAERCAFRPLTRKPILPHFAVGAGANAADAK 304 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 +E ELR +A GL RLA +++G DY RL FEL+VI RM ++GYFLIVADFI Sbjct: 305 SDEVAELRRQAEEGLANRLAVHGLSQGMTEDDYSARLSFELDVITRMNYAGYFLIVADFI 364 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 + AK IPVGPGRGSGAGS+ AY LTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 365 KHAKSEGIPVGPGRGSGAGSLVAYVLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 424 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P +PA Sbjct: 425 ERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 484 Query: 485 HPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 P++L A IA + + + R DP V R +I+Q+LEGL RHASTHAAGIVIGDRPLS+LV Sbjct: 485 APITLAAAIASEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELV 544 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QR V +DL+ +P Sbjct: 545 PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNVHIDLATLPL 604 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD E+Y +LT +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Y Sbjct: 605 DDAESYQMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCA 664 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI+ Sbjct: 665 RKHGEEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA 724 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM+KQ F++G+ KNG+ K A IFELLAKFADYGFNKSHAAAYA++SYQTA+MK HY Sbjct: 725 EMEKQHAIFVAGSVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSYQTAYMKAHY 784 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P+EFLAASMTL+M N +K+ +F +A++ I++ PS+N F+V I Y+LAA+K Sbjct: 785 PIEFLAASMTLDMSNTDKLSEFRSEAQRLEIKVEAPSINRSGATFEVSGGVICYALAALK 844 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG I+EA + F SL DF +RV + +N+RV+ESL AGA D F +R ++ Sbjct: 845 GVGAQAVEQIVEARKNGLFTSLADFAARVPPRAVNKRVIESLAAAGAFDAFEPNRARVFA 904 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGF 961 + I Q + ++F G +D I L + S R + E +GF Sbjct: 905 GAEAILAACQRSHEAAMLGQNDMF----GGMADAPAIMLPQAEPWLPSDRLKREYDAVGF 960 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019 + SGHPLD Y L+++ ++ + E ++ R+AA VVS+ +++T+ G+++G + Sbjct: 961 FLSGHPLDDYATALKRLRVQSWAEFSRAVKTGATAGRVAATVVSRMERRTKTGNKMGIIG 1020 Query: 1020 FSEPAKEYEANFF 1032 S+P +EA F Sbjct: 1021 LSDPTGHFEAVLF 1033 >gi|115524557|ref|YP_781468.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisA53] gi|115518504|gb|ABJ06488.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisA53] Length = 1165 Score = 1060 bits (2742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/1032 (52%), Positives = 697/1032 (67%), Gaps = 16/1032 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS+YSLL+G++ + + D AD QPA+A+TDT+N+F ALEFS K AGIQP Sbjct: 5 GFVHLHVHSAYSLLKGSIKIGKLADLAKADHQPALALTDTDNMFGALEFSDKMAGAGIQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+GC+L ID D + + PS IVLL S GY+ L++L SR +L Q Sbjct: 65 IVGCELAIDFGD---VDPTARNALAAGPSRIVLLASRERGYRSLMKLNSRAFLETPVNQV 121 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L WL + E LI L+GG GPI A + +AE R LFGDRLY+ LQR Sbjct: 122 PHIKLDWLLD-EAEDLIALSGGPDGPISLAIAADQQALAETRCERLASLFGDRLYIELQR 180 Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G D R E ++ LAY LPLVATN F S +DYEAHD L+ +A ++++ DR Sbjct: 181 H-GVDAERRVEPALIDLAYAKGLPLVATNEPYFASTDDYEAHDALLCIASGKLIAETDRV 239 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD---DI 303 ++TPDH K R+EM +F+DLPEAL +TVEIA RC+F + PILP F D Sbjct: 240 QLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCAFRPKTRKPILPFFTVGAGTGDTDA 299 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E ELR +A GL RL +A+G +DYR RL FEL+VI RMK++GYFLIV+DF Sbjct: 300 ASLEAEELRVQAERGLAHRLEVHGLAQGVSEEDYRARLAFELDVITRMKYAGYFLIVSDF 359 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK+ IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDFC Sbjct: 360 IKWAKQQGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFC 419 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P +P Sbjct: 420 QDRRGEVITYVQERYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNP 479 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A PVSL QAI + + + R DP V R +I+Q+LEGL RHASTHAAGIVIGDRPLS+L Sbjct: 480 AAPVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSEL 539 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QRGV V L +P Sbjct: 540 VPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRGVHVALPTLP 599 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +T+ +L +G+FQLES GMR+AL M+PD EDIIALV+LYRPGP+ NI Y Sbjct: 600 LDDPDTFTMLARGDVVGVFQLESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTYC 659 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI+ Sbjct: 660 ARKHGDEEPEYLHPILEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIR 719 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EM+KQ+ F+ GA KNG+ K A IF+LLAKFADYGFNKSHAAAYA++SY TA+MK H Sbjct: 720 AEMEKQRAIFVDGAMKNGVPKGQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAH 779 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVEFLAASMTLE+ N +K+ +F +A++ I++ PSVN F+V D I+Y+LA + Sbjct: 780 YPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVADGTIFYALAGL 839 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGVG I+ A F SL DF ++V+ + +N+RV+E L AGA D +R + Sbjct: 840 KGVGQQAVEQIVAARQGGAFTSLADFAAKVNPRAINKRVIECLAAAGAFDQINPNRAAVS 899 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 + I Q + + ++F S I L + R E +GF+ Sbjct: 900 GGAEAILAACQRHHEAQVVGQNDMFGGSADAPS--IMLPPLEAWLPAERLRREYDAIGFF 957 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020 SGHPLD Y L+++ ++ + E ++ ++AA VVS+ +++T+ G+++G Sbjct: 958 LSGHPLDDYAVALKRLRVQSWAEFCRAVKSGATAGKVAATVVSRMERRTKTGNKMGIFGL 1017 Query: 1021 SEPAKEYEANFF 1032 S+ +EA F Sbjct: 1018 SDATGHFEAVLF 1029 >gi|299135003|ref|ZP_07028194.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2] gi|298589980|gb|EFI50184.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2] Length = 1135 Score = 1058 bits (2737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/1003 (52%), Positives = 696/1003 (69%), Gaps = 14/1003 (1%) Query: 38 ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97 AD QPA+A+TD +N+F ALEFS+K GIQPIIGC L +D D + P Sbjct: 12 ADHQPALALTDRDNMFGALEFSEKLAGVGIQPIIGCALAVDFGDVDPNARNAQALGPA-- 69 Query: 98 SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157 IV+L ++ EGY+ L+ L SR +L G+Q I WL++ T GLI LTGG GP+ + Sbjct: 70 RIVMLAASQEGYRSLMRLNSRAFLDMPGQQIPHIKAEWLKD-DTSGLIALTGGPEGPVSQ 128 Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATN 215 A ++A +R+ LFGDRLY+ LQRH G D R ES ++ +AY LPLVATN Sbjct: 129 ALTAEQPELALQRVEKLVGLFGDRLYIELQRH-GLDSERRVESALIDIAYGKGLPLVATN 187 Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275 F + +DYE+HD L+ +A ++++ +R +TPDH K R+EM +F+DLPEAL +TV Sbjct: 188 EPYFATADDYESHDALLCIAGGRLIAETERAHLTPDHRFKTRAEMAVLFADLPEALASTV 247 Query: 276 EIARRCSFILQVHAPILPRFI--EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 EIA+RCSF + PILP F +D E EL+ +A GL R+ + +A+G Sbjct: 248 EIAQRCSFRPKTRKPILPHFTVGSGHHEDPSAAEAAELQRQAQEGLAHRIEKHGLAEGQT 307 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 +DY RL FEL+VI RMK+ GYFLIV+DFI+WAK IPVGPGRGSGAGS+ AYALTIT Sbjct: 308 EEDYYNRLAFELDVIKRMKYPGYFLIVSDFIKWAKAQGIPVGPGRGSGAGSLVAYALTIT 367 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 D+DPLRF LLFERFLNP+R+SMPDFDIDFCQDRR EVI YVQ +YG ++V QIITFG+LQ Sbjct: 368 DLDPLRFGLLFERFLNPERVSMPDFDIDFCQDRRGEVIHYVQERYGRDQVGQIITFGTLQ 427 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLL 512 A+ LRDVGR LQMPY QVD+L KL+P +PA PV+L A IA + + + R DP V R Sbjct: 428 ARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAAAIAGEPKLQAFRDEDPVVARAF 487 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 +I+Q+LEGL RHASTHAAGIVIGDRPLS+LVPMYRD +SD+PVTQFNMKW+E AGL+KFD Sbjct: 488 DIAQRLEGLTRHASTHAAGIVIGDRPLSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFD 547 Query: 573 FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 FLGLKTLT+L ++ L QR V VDL+ +P DD ETY +LT +G+FQ+ES GMR+AL Sbjct: 548 FLGLKTLTVLDVAVKLLKQRNVHVDLAHLPLDDKETYEMLTRGDVVGVFQVESQGMRRAL 607 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 M+PD EDIIALV+LYRPGP+ NI Y RK+G E+ +HP+++P+LKET GVIIYQ Sbjct: 608 VDMRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEEPEYLHPVLEPILKETFGVIIYQ 667 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQIAQ+++GYSL EAD+LRRAMGKKI+ EM+KQ+ RF+SG+ ++ I+K A IFEL Sbjct: 668 EQVMQIAQVMAGYSLGEADLLRRAMGKKIRAEMEKQRVRFVSGSVEHSITKGQAEQIFEL 727 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 LAKFADYGFNKSHAAAYA++SYQTA+MK HYPVEF+AASMTL+ N +K+ +F +A++ Sbjct: 728 LAKFADYGFNKSHAAAYALVSYQTAFMKAHYPVEFIAASMTLDTGNTDKLSEFRAEAQRL 787 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 I++ PPS+N F VG N I+YSLAA+KGVGT I+EA + PF SL DF +R Sbjct: 788 GIKVEPPSINRSEGTFTVGGNTIFYSLAALKGVGTHAVDMIVEARKNGGPFTSLADFAAR 847 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + +N+RVLESL AGA D F +R + D I Q T ++F + Sbjct: 848 VPPRAINKRVLESLAAAGAFDEFNPNRAAVFAGADAILAACQRSHDAVTLGQSDMFGSQS 907 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 G + + L + R + E +GF+ SGHPLD Y+ +L+++ ++ + E ++ Sbjct: 908 G--APTLILPNVEPWLPAERLQREYGAVGFFLSGHPLDDYRVVLQRLNVQSWAEFSNAVK 965 Query: 992 GNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++AA VVS+ +++T+ G+++G + S+P +EA F Sbjct: 966 NGRTAGKVAATVVSRMERRTKTGNKMGIIGLSDPTGHFEAVLF 1008 >gi|86749719|ref|YP_486215.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris HaA2] gi|86572747|gb|ABD07304.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2] Length = 1151 Score = 1058 bits (2735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/1033 (50%), Positives = 713/1033 (69%), Gaps = 18/1033 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS+YSLL+G++ + + D AD QPA+A+TDT+N+F ALEFS K +GIQP Sbjct: 5 GFVHLHVHSAYSLLKGSMKIARLADLAKADHQPALALTDTDNMFGALEFSDKLAGSGIQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L ID D + P +VLL + GY+ L+ L SR +L Q Sbjct: 65 IVGLELGIDFGDQDPTSRNAALAAPA--RVVLLATRERGYRSLMRLNSRAFLETPVNQPP 122 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + T+ +I LTGG GPI A + + + R + FGDRLYV LQRH Sbjct: 123 HIKFDWL-DGETDDVIALTGGPEGPISLAMLTDPA-LGRLRCERLAQAFGDRLYVELQRH 180 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R E+ ++ +AY LPLVATN F + +D+EAHD L+ +A ++++ DR ++ Sbjct: 181 NTDVERRAEAGLIDIAYDMGLPLVATNEPHFATADDFEAHDALLCIASGKLIAETDRVQL 240 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEE 307 TPDH K R+EM +F+DLPEAL +TVEIA+RC++ PILP F + +D ++ Sbjct: 241 TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVNDAEEAA 300 Query: 308 ENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E LR +A GL R+ +++G +DY++RL FEL+VI RMK++GYFLIV+DFI Sbjct: 301 AAEAAELRRQAEQGLADRMRVHGLSQGMTEEDYQKRLAFELDVITRMKYAGYFLIVSDFI 360 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 361 KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 420 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR EVI YVQ++YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P +PA Sbjct: 421 DRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 480 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 PVSL QAI + + + R DP V R +I+QKLEGL RHASTHAAGIVIGDRPLS LV Sbjct: 481 APVSLKQAIESEPKLQAFRDEDPVVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV 540 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QR + +DL+ + Sbjct: 541 PMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDIHIDLATLGI 600 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D +Y +L +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Y Sbjct: 601 EDPVSYQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCA 660 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI+ Sbjct: 661 RKHGDEESEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRA 720 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM+KQ+ F+ GA+KNG+ K A IF+LLAKFADYGFNKSHAAAYA++SY TA+MK HY Sbjct: 721 EMEKQRAIFVEGATKNGVPKDSADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 780 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+AASMTL+++N +K+ +F +A++ I++ PSVN F+VG N IYY+LA +K Sbjct: 781 PVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEAPSVNRSGPTFEVGANTIYYALAGLK 840 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + I+EA DKPF SL DF +RV+ + +N+RV+ESL AGA DC +R ++ Sbjct: 841 GVGLQAVQMIVEARGDKPFASLADFAARVNPRAINKRVIESLAAAGAFDCLDSNRARVFA 900 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGF 961 D I Q + T+ ++F G +D ++ L + + R E +GF Sbjct: 901 GADAIIAACQRSHEAATSGQNDMF----GGLADAPQVVLPQIEPWLPAERLRREYDAIGF 956 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVT 1019 + SGHPLD Y L+++ ++ + E ++ ++AA VVS+ +++T+ G+++G + Sbjct: 957 FLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIMG 1016 Query: 1020 FSEPAKEYEANFF 1032 S+P +EA F Sbjct: 1017 LSDPTGHFEAVLF 1029 >gi|312114721|ref|YP_004012317.1| DNA polymerase III subunit alpha [Rhodomicrobium vannielii ATCC 17100] gi|311219850|gb|ADP71218.1| DNA polymerase III, alpha subunit [Rhodomicrobium vannielii ATCC 17100] Length = 1151 Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/1036 (52%), Positives = 722/1036 (69%), Gaps = 17/1036 (1%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL VHS+YSLLEGAL + ++ AAD QPA+AITD NNLF ALEFS+ GIQ Sbjct: 4 PGFIHLHVHSAYSLLEGALPVKALIKAAAADGQPALAITDRNNLFGALEFSEYLSGEGIQ 63 Query: 69 PIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGC L + T + G+ P +IVLL AEGY L+ L SR +L Sbjct: 64 PIIGCALTLAFPAPADETPRPGQRPDAHSGTIVLLAKDAEGYGNLMRLSSRAFLDSGDGS 123 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + + + +L E GLI L+GG GP DRAF ++ +AE RL T + FG+R YV +Q Sbjct: 124 NPHVEVEFLVEHAG-GLIALSGGPDGPADRAFAAGNAAIAEARLATLAEAFGNRFYVEIQ 182 Query: 188 RHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 RH G R R E Q+++ AY + +PLVATN + F +EAHD L+ +A V++ DR Sbjct: 183 RH-GLARERAVEPQLLRWAYDNGVPLVATNEAYFPKRAVFEAHDALLCIAEGRYVAEDDR 241 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R++PDH+LK +++MV +F+DLPEA+ NT+EIA+RC+F + PILP+F+ +D + Sbjct: 242 RRLSPDHWLKPQADMVKLFADLPEAVANTIEIAQRCAFRPRPRKPILPQFVAG-SEDTHE 300 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVAD 362 E ELR +A+AGLE RLA I +HA +Y +RL+FEL+VI RMKF GYFLIV+D Sbjct: 301 AEAAELRRQAIAGLEHRLA--TIPAHFHAASKDEYFKRLEFELDVITRMKFPGYFLIVSD 358 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK IPVGPGRGSGAGSV A++LTITD+DP+RF LLFERFLNP+R+SMPDFDIDF Sbjct: 359 FIKWAKAQGIPVGPGRGSGAGSVVAWSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDF 418 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRRDEVI+YV+ KYG RVAQIIT+G LQA+A LRDVGR LQMPY QVDRLCKL+PN+ Sbjct: 419 CQDRRDEVIQYVRAKYGSNRVAQIITYGKLQARAVLRDVGRVLQMPYGQVDRLCKLVPNN 478 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PV+L +AI + + +EAR + V +LL+ +QKLEGLYRHASTHAAG+VIGDR L + Sbjct: 479 PANPVTLAEAIEGEPQLQEARDREEIVAQLLDTAQKLEGLYRHASTHAAGVVIGDRDLVE 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVP+YRD +SD+ VTQFNMKW+E+AGL+KFDFLGLKTLT+LQK+ L + G +DL + Sbjct: 539 LVPLYRDPKSDMLVTQFNMKWVEQAGLVKFDFLGLKTLTVLQKACALLEKAGRPIDLGHL 598 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L T G+FQLES+GMR+AL ++PD DIIA+V+LYRPGP+DNI Y Sbjct: 599 PLDDRPTYEMLAKGDTGGVFQLESTGMREALRKLKPDRFGDIIAMVALYRPGPMDNIETY 658 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 NRK+G E +HPL P+L+ET GVIIYQEQVMQ+AQ+LSGYSL EAD+LRRAMGKKI Sbjct: 659 VNRKHGIEVPDYLHPLAKPILEETYGVIIYQEQVMQLAQVLSGYSLGEADLLRRAMGKKI 718 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K EMD Q RF+ GA + I + A IFEL+AKFA YGFNKSHAAAYA+I+YQTA++K Sbjct: 719 KAEMDAQGARFVKGALEKDIPEARARYIFELVAKFAGYGFNKSHAAAYALIAYQTAYLKA 778 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLA 840 ++ EF+AASMTL+M N +K+ F ++A++ + I+PPSVN V+F+ GDN I Y+LA Sbjct: 779 NHAQEFIAASMTLDMANTDKLYAFTREAKRNGLAILPPSVNKSAVEFEPEGDNAIRYALA 838 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 A+K +G A HI+EA DKP+ L DF R++ K LN+R +E+L AGA + +R + Sbjct: 839 ALKNMGHAAAAHIVEARGDKPYRDLADFMLRINPKALNKRGIETLNAAGAFEDMETNRAK 898 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQRVL 959 + ++LD + ++ ++R E++F G+ + ++ L + ENE Sbjct: 899 VAKNLDRLVEFGSKAAEDRARGQEDMFGGGIAGSPAPRLDLADAPEWSLVETLENELGAA 958 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKTRKGSRIG 1016 GFY SGHPLD + L +M + + + A ++ + RLAA V +Q +K + G+R Sbjct: 959 GFYLSGHPLDDFTDQLARMNVLKWSDFSARVQAHGRAESRLAATVTYRQDRKAKSGNRFA 1018 Query: 1017 WVTFSEPAKEYEANFF 1032 + FS+P ++EA F Sbjct: 1019 FAGFSDPTGQFEAVIF 1034 >gi|27379977|ref|NP_771506.1| DNA polymerase III subunit alpha [Bradyrhizobium japonicum USDA 110] gi|27353130|dbj|BAC50131.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110] Length = 1167 Score = 1055 bits (2727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/1032 (50%), Positives = 705/1032 (68%), Gaps = 14/1032 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VHS+YSLL+G++ + + + D QPA+A+TDT+NLF ALEFS K +GI Sbjct: 3 SAGFVHLHVHSAYSLLKGSIKIGKLAELAKKDHQPALALTDTDNLFGALEFSDKMAGSGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 QPI+GC+L ID D P +VLL + GY+ L+ L SR +L Sbjct: 63 QPIVGCELAIDFGDQDPTARNAIGP----SRVVLLAAQERGYRSLMRLNSRAFLETPDSH 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + I W + TEGLI LTGG GPI A +++A R LFGDRLY+ LQ Sbjct: 119 APFIKFDWF-DGETEGLIALTGGPDGPISLALAGGMAELAATRCERLATLFGDRLYIELQ 177 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 RH +R ES ++ +AY LPLVATN F + +DYEAHD L+ +A ++++ DR Sbjct: 178 RHNIDKERRVESGLIDIAYAKGLPLVATNEPYFAATDDYEAHDALLCIAGGRLIAESDRV 237 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304 ++TPDH K R+EM +F+D+PEAL +TVEIA RCSF PILP F D Sbjct: 238 QLTPDHRFKTRAEMAVLFADIPEALASTVEIAERCSFRPMTRKPILPFFTVGAAASSDAA 297 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E EL+ +A GL RL +++G +DY +RL FEL+VI RMK++GYFLIV+DFI Sbjct: 298 AVEAAELKRQAEEGLANRLRVHGLSQGTTEEDYSKRLAFELDVIMRMKYAGYFLIVSDFI 357 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK IPVGPGRGSGAGS+ A+ALTITD+DP++F LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 358 KWAKSQGIPVGPGRGSGAGSLVAWALTITDLDPIKFGLLFERFLNPERVSMPDFDIDFCQ 417 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR EVI+YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P +PA Sbjct: 418 DRRGEVIQYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA 477 Query: 485 HPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 PV+L A I + + + R DP V R +I+Q+LEGL RHASTHAAGIVIGDRPLS+LV Sbjct: 478 APVTLAAAIESEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELV 537 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L + L R + VDL+ +P Sbjct: 538 PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVACKLLKPRDIHVDLATLPI 597 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD E+Y +L +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Y + Sbjct: 598 DDAESYQMLARGEVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCS 657 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ++SGYSL +AD+LRRAMGKKI+ Sbjct: 658 RKHGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMSGYSLGDADLLRRAMGKKIRA 717 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMDKQ++ F++GA KNG+ K A IFELLAKFADYGFNKSHAAAYA++SY TA+MK HY Sbjct: 718 EMDKQRDIFVAGAVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSYHTAYMKAHY 777 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+AASMTL+++N +K+ +F +A++ I++ PP++N F+VG+ IYY+LAA+K Sbjct: 778 PVEFIAASMTLDLNNTDKLSEFRSEAQRLGIKVEPPNINRSGATFEVGEKTIYYALAALK 837 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+E + + F SL DF +RV+ + +N+R++ESL AGA D +R ++ Sbjct: 838 GVGIQAIDQIIEERTKNGLFTSLADFAARVNPRAINKRIIESLAAAGAFDTLEPNRARVF 897 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 D I Q + T ++F + I L + + R E +GF+ Sbjct: 898 AGADAILAACQRAHEAATIGQNDMFGMSAD--APTIMLPQIEAWLPAERLRREYDAIGFF 955 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTF 1020 SGHPLD Y +L+++ ++ + E ++ ++AA VVS+ +++T+ G+++G + Sbjct: 956 LSGHPLDDYATVLKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGIMGL 1015 Query: 1021 SEPAKEYEANFF 1032 S+P +EA F Sbjct: 1016 SDPTGHFEAVLF 1027 >gi|323136417|ref|ZP_08071499.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242] gi|322398491|gb|EFY01011.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242] Length = 1153 Score = 1044 bits (2699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 527/1035 (50%), Positives = 697/1035 (67%), Gaps = 17/1035 (1%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL VH+++SL EGALS+ ++D D+QPA+A+TDTNNLF+ALEFS+KA AG+Q Sbjct: 6 PGFVHLHVHTAFSLREGALSIGKLIDLAVRDEQPALAVTDTNNLFAALEFSEKAAKAGLQ 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G QL +D D G+ + ++VLL T GY+ L+ L SR YL + + Sbjct: 66 PIAGVQLCVDFGDGKSGGLAGQDE--RLANLVLLAKTEAGYRNLMRLASRAYLETEQGDA 123 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + L+ L E LI LTGG G +DRAF + A RL +++F +RLY+ +QR Sbjct: 124 PHVTLAALSADAEE-LIALTGGPDGALDRAFAAGRPEQARARLDVLERMFNNRLYIEIQR 182 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H+ + E Q++ +AY LPLVATN F S D+EAHD L+ +A TV S +R R Sbjct: 183 HKLKLELEVEPQLLDIAYRRGLPLVATNEPYFASLGDFEAHDALLCIAEGTVTSVSERRR 242 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD--IQK 305 V+P+H+ K R++M ++F+DLPEA NTVEIARR SF + PI+PRF+ DD + + Sbjct: 243 VSPEHWFKTRADMRALFADLPEATANTVEIARRVSFRPKTRKPIMPRFMRDTPDDRPLNE 302 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E ELR +A GLE RLA A+G+ +DY RLDFEL+ I +M F GYFLIV+DFI+ Sbjct: 303 VEAEELRRQATEGLEARLAAHGPAEGHAREDYFARLDFELSTIEKMGFPGYFLIVSDFIK 362 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK IPVGPGRGSGAGS+ AYALTITD+DPLRF L FERFLNP+R+SMPDFDIDFCQ Sbjct: 363 YAKSKGIPVGPGRGSGAGSLVAYALTITDLDPLRFGLFFERFLNPERVSMPDFDIDFCQT 422 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV+++YG +RVAQIITFGS A+ LR VGR L+MP QVD+L KL+P +PA Sbjct: 423 RRGEVIEYVRDRYGADRVAQIITFGSFLARGVLRSVGRVLEMPLGQVDKLAKLVPQNPAK 482 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 PV+L +A+A + + REA D V RL +++ LEGLY +ASTHAAG+VIGDRPL ++ P Sbjct: 483 PVTLAEALAGEQKLREAAAEDERVARLFKVAGALEGLYSNASTHAAGVVIGDRPLHEVTP 542 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 +YRD +SD+P TQFNMKW+E AGLIKFDFLGLKTLT+L + D +R DL+ +P D Sbjct: 543 LYRDPKSDMPATQFNMKWVEPAGLIKFDFLGLKTLTVLAMAGDLARRRDPDFDLAKVPLD 602 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D ETY +L T+G+FQLES+GMR+AL M D EDIIALV+LYRPGP+ NI Y Sbjct: 603 DPETYAMLGRGETVGVFQLESAGMRKALVEMHADRFEDIIALVALYRPGPMANIPTYCAV 662 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K G E+ HP I+P+LKET GVIIYQEQVMQIAQ+LSGY+L EAD+LRRAMGKKIK E Sbjct: 663 KLGDEEADYYHPKIEPILKETFGVIIYQEQVMQIAQVLSGYTLGEADMLRRAMGKKIKAE 722 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MD Q+ERF+ GA + + +A IF+LLAKFADYGFNKSHAAAYA+I+YQTAW K HYP Sbjct: 723 MDAQRERFVKGAIEREVKADLANFIFDLLAKFADYGFNKSHAAAYALIAYQTAWFKAHYP 782 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSL 839 EFLAASMT + +K+ +F +AR+ I + PPS+ VDF V G I Y+L Sbjct: 783 AEFLAASMTFDKSQTDKLAEFRDEARRLGIAVEPPSIRRSGVDFDVAPGSDGKLAIRYAL 842 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 +AIKGVG A I+ A D PF SL DF R++ +++N++VLE+L GA D R Sbjct: 843 SAIKGVGEGQAESIVRARGDLPFKSLSDFARRINPREVNKKVLENLAACGAFDELQPDRA 902 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 +++ + A ++R +F + +D + L + + N++ R + E Sbjct: 903 TAFAAVEPVLAAANRHTEDRKAGQNALFGEAE---ADDLVLPRVTPWNAAERLQREYDAA 959 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGW 1017 GF+ SGHPLD Y +L K+ + + + VA ++G RLAA+V+ + +++T+ GS++G Sbjct: 960 GFFLSGHPLDAYAGLLPKLRVSRWSKFVADVKGGATAGRLAAVVLDRAERRTKSGSKMGI 1019 Query: 1018 VTFSEPAKEYEANFF 1032 V S+ +YEA F Sbjct: 1020 VQLSDTTGQYEAILF 1034 >gi|300023432|ref|YP_003756043.1| DNA polymerase III subunit alpha [Hyphomicrobium denitrificans ATCC 51888] gi|299525253|gb|ADJ23722.1| DNA polymerase III, alpha subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 1180 Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 531/1051 (50%), Positives = 703/1051 (66%), Gaps = 30/1051 (2%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K+P FVHL+VHS+YSLLEGAL + + A Q PA+ +TD+NN F ALEFS K AG Sbjct: 8 KAPQFVHLKVHSAYSLLEGALPIAKLAKLAEAMQLPALGLTDSNNFFGALEFSDKLWGAG 67 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP------SIVLLVSTAEGYQRLIELVSRMY 120 +QPI G LD+D DN P I LL TA+G+ L+ L +Y Sbjct: 68 VQPIAGGSLDVDFGDNRDAQPSALRSLSNEPRSKPAGKIALLAMTADGFANLMRLSKALY 127 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + + ++ ++E +EG+I LTGG GPID A +A +R+ T +K+FGD Sbjct: 128 FEAAADEPAHVKIARIEEF-SEGIIALTGGPQGPIDSALRDGQHDLALERIKTLEKIFGD 186 Query: 181 RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 RLYV +QRH + E ++ LAY +P+VATN F DYEAHDVL+ +A Sbjct: 187 RLYVEVQRHGLPEEADVEPDLLDLAYARRIPIVATNECYFAQRGDYEAHDVLLCIADGRY 246 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 V + +R R +P+HYLK +EMVS+F+DLPEAL NTVEIA RC+ + PILPRF++ Sbjct: 247 VVEDNRRRASPEHYLKTEAEMVSLFADLPEALANTVEIAMRCTARPEGRKPILPRFVK-- 304 Query: 300 CDDIQKEEEN------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 DD E EN EL+ +A GL RLA A G+ +DY +RL +E++VI +MKF Sbjct: 305 ADDSLSEIENFRLEAAELKAQAKDGLARRLAAHGPAAGFTVEDYEKRLVYEIDVITQMKF 364 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIVADFI+W+K N +PVGPGRGSGAGS+ AYALTITD+DPL+F LLFERFLNP+R+ Sbjct: 365 PGYFLIVADFIKWSKANGVPVGPGRGSGAGSLVAYALTITDLDPLQFGLLFERFLNPERI 424 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFD+DFCQ++RD VI YVQ KYG +RVAQIIT G LQA+A LRDVGR LQMPY QVD Sbjct: 425 SMPDFDVDFCQEKRDRVIDYVQKKYGDDRVAQIITHGKLQARAVLRDVGRVLQMPYGQVD 484 Query: 474 RLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 RLCKL+PN+PA+PV+L QAI + + +E R +P V RLLEI+QKLEGLYRHASTHAAG+ Sbjct: 485 RLCKLVPNNPANPVTLAQAIEGEPKLQEERDREPIVARLLEIAQKLEGLYRHASTHAAGM 544 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 VIGDRPL +LVP+YRD +S P+TQ+N K +E AGL+KFDFLGLKTLT+L+K++ ++Q Sbjct: 545 VIGDRPLEELVPLYRDPKSHFPITQYNWKMVEAAGLVKFDFLGLKTLTVLEKAVKLISQV 604 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 RGV VDL +P DD TY +L T G+FQLES+GMR++L+ ++PD EDIIA+V+LYR Sbjct: 605 RGVTVDLPSLPLDDKPTYDMLAKADTAGVFQLESTGMRESLKRLKPDRFEDIIAMVALYR 664 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI Y NRK+G+E + +H ++ +LKET GVIIYQEQV+QIAQ++ GY+L +AD Sbjct: 665 PGPMDNIPTYINRKHGEEPVDYLHDMLQGILKETYGVIIYQEQVIQIAQVMGGYTLGQAD 724 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK K EM KQ+ RF+ GA G+ K A IFEL+ KFA YGFNKSHAAAYA+ Sbjct: 725 MLRRAMGKKDKAEMAKQQARFVEGAVAKGVKKEEAKYIFELVDKFAGYGFNKSHAAAYAL 784 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SY TA++K ++ EF AASMTL+M N +K+ F +AR+ I+++PP VN VDF V Sbjct: 785 VSYHTAYLKANFREEFFAASMTLDMGNTDKLAMFASEARKSGIRMLPPCVNQSAVDFGVE 844 Query: 831 ------GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLE 883 I YSLAA+K +G I+ +K F SL DF RVD+K LN+R +E Sbjct: 845 PAAEGAKHGAIRYSLAALKNIGAGAVETIVNERNEKGAFKSLADFAERVDAKALNKRAIE 904 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 +L GA D F R ++ + D I AQ N ++F G + ++ L Sbjct: 905 TLAKGGAFDAFNNDRARVAANADTILASAQRRTANEAQGMTDLFG--SGGKAAELVLRSA 962 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMV 1001 R E +GFY SGHPLD Y +L K+G++ + E V T RG RLA +V Sbjct: 963 EGWTPMERLAAEFEAIGFYLSGHPLDQYDHVLSKLGVRKFTEFEVLTERGATAGRLAGVV 1022 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ ++++++KG++ + +FS+ ++EA F Sbjct: 1023 IAARERRSQKGNKFAFASFSDATGQFEAVIF 1053 >gi|170748452|ref|YP_001754712.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM 2831] gi|170654974|gb|ACB24029.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM 2831] Length = 1172 Score = 1035 bits (2677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 527/1056 (49%), Positives = 715/1056 (67%), Gaps = 38/1056 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL VHSSYSLLEGAL + +++ AD+QPA+A+TDTNNLF ALEFS+KA G Sbjct: 6 KEVGFVHLHVHSSYSLLEGALKVGSLIKAAVADRQPALALTDTNNLFGALEFSEKAAGEG 65 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +QPI G QL + + Q PT IVLL GY L+ L SR Y Sbjct: 66 VQPIAGVQLSVAFEAADPHQRQA----PTSHGIVLLAQDETGYANLLRLASRAYFDTALG 121 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 ++ R+ L +EGLI+LTGG +GP+D AF ++A RL K+ FG DRLYV Sbjct: 122 EAPRLDAGALAG-ASEGLIVLTGGMAGPLDAAFRAGRPELALNRLKRLKETFGEDRLYVE 180 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +QRH + R E+ ++ LA H L +VATN F +DY+AHD L+A+A +VS Sbjct: 181 IQRHGLPEEGRIETALLDLAGRHGLGIVATNEPFFAKPDDYDAHDALLAIAEGRLVSDDR 240 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE------- 297 R R+TP H K R+EM +F DLP+AL+ TVEIA RC+ + PILP F Sbjct: 241 RRRLTPTHAFKTRAEMAELFRDLPDALQATVEIAMRCAVRARTRKPILPNFGAVAAGETP 300 Query: 298 ------KECDD-----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 E D + +E ELR +A AGLE+RL Q A G+ +DYR+RL FEL+ Sbjct: 301 PMADALAEASDAGAQAVSADEPTELRRQAEAGLELRLKQHGTAPGFSEEDYRKRLAFELD 360 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFER Sbjct: 361 VIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFER 420 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPDFDIDFC + R+ VI+YVQ +YG +V QIITFG+L A+ LRDVGR L+ Sbjct: 421 FLNPERVSMPDFDIDFCVEGRERVIKYVQQRYGEGQVGQIITFGTLLARGVLRDVGRVLE 480 Query: 467 MPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525 MPY QVD+L KL+P +PA+PV+L QAI + + ++A +P V RL++I++KLEGL+RHA Sbjct: 481 MPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAMEEEPVVGRLIDIAKKLEGLHRHA 540 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 STHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ Sbjct: 541 STHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCC 600 Query: 586 LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 D L QRG+ +DL+ +P DD TY + T+G+FQ+ES+GMR+AL MQ D +EDIIA Sbjct: 601 TDLLKQRGIHIDLASLPLDDPNTYGPMGRGETVGVFQVESAGMRKALCEMQADRLEDIIA 660 Query: 646 LVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 LV+LYRPGP+ NI VY RK G+ E P ++PMLKET G+I+YQEQVM+IA++ Sbjct: 661 LVALYRPGPMANIPVYCERKLGRDAGNEASWYPDPKLEPMLKETFGIIVYQEQVMEIAKV 720 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 L+GYSL EAD+LRRAMGKKI+ EMD Q++RF+ G ++ G++K A IF+LLAKFADYGF Sbjct: 721 LAGYSLGEADMLRRAMGKKIRAEMDAQRDRFLKGCTERGLTKAKANEIFDLLAKFADYGF 780 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSHAAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++ I + PPS+ Sbjct: 781 NKSHAAAYALLTYQTAYLKANFPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSI 840 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881 NT F+V D +I+Y+LAAIKGVG R ++EA D+PF L R++ + +N+R Sbjct: 841 NTSGEVFEVRDGKIFYALAAIKGVGREAVRALVEARGDRPFKDLACLARRLNPRMINKRT 900 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 LESLV AGALDC R + +++ I K A + T ++F G +D ++L Sbjct: 901 LESLVQAGALDCIEPDRARAFAAVEPIMKLAASAVEAETAGVTDMFG---GVVADDVSLR 957 Query: 942 --KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---R 996 + + + E +GF+ SGHPLD Y +L K+ ++ + + +R R Sbjct: 958 IPPHEIWPMADTLKREYAAIGFFISGHPLDEYGDLLDKLRVQSWTDFCRAVRAGTSSVGR 1017 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +AA V+ + +++T+ G+++G VT S+ +EA F Sbjct: 1018 VAASVLDRAERRTKTGNKMGIVTLSDRTAHFEAIIF 1053 >gi|163850481|ref|YP_001638524.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1] gi|240137543|ref|YP_002962014.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1] gi|163662086|gb|ABY29453.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1] gi|240007511|gb|ACS38737.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1] Length = 1173 Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/1057 (50%), Positives = 713/1057 (67%), Gaps = 39/1057 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL VHSSYSLLEG + +++ AAD+QPA+A+TDTNNLF ALEFS+ A AG Sbjct: 6 KEVGFVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAG 65 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IQPI G QL I + M + P +IVLL GY L+ L SR + Sbjct: 66 IQPIAGLQLTICFEAPDPMA---RLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLG 122 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVN 185 + + +S L E EGLI LTGG SGP+D + A +RL K FG+ LYV Sbjct: 123 AAPNLAVSAL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVE 181 Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QRH G D R E ++++LA T+ L +VATN F DY+AHD L+A+A +VS + Sbjct: 182 IQRH-GLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDE 240 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI------- 296 R R+TP H R+ M+ +F DLP+AL +VEIA RCS+ + PILP F Sbjct: 241 RRRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEA 300 Query: 297 -----------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 E + +E EL +A AGLE+RL Q A G+ +DYR RL FEL Sbjct: 301 PPMADALAEAAETPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFTEEDYRARLKFEL 360 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFE Sbjct: 361 DVIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFE 420 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPDFDIDFC + R+ VIRYVQ +YG +V QIITFG+L A+ LRDVGR L Sbjct: 421 RFLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVL 480 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 +MPY QVD+L KL+P +PA+PV+L QAI + + ++A +P V RL+EIS+KLEGL+RH Sbjct: 481 EMPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRH 540 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 ASTHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ Sbjct: 541 ASTHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRC 600 Query: 585 SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 D L QRG++VDL+ IP DD +TY + T+ +FQ+ES+GMR+AL MQ D +EDII Sbjct: 601 CTDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDII 660 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 ALV+LYRPGP+ NI VY RK G+ E HP+++P+LKET G+I+YQEQVM++A+ Sbjct: 661 ALVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAK 720 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 +L+GY+L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K A IF+LLAKFADYG Sbjct: 721 VLAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYG 780 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++ I + PPS Sbjct: 781 FNKSHAAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPS 840 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 VNT V F V + RI Y+LAAIKGVG + I+ A DKPF L F R++ + +N+R Sbjct: 841 VNTSGVVFDVREGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKR 900 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 LE+L+ AGALDC R + +++ + K AQ + T+ ++F G S + L Sbjct: 901 TLENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFG---GVASVDVAL 957 Query: 941 EKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--- 995 E + + + E +GF+ SGHPLD Y PIL K+ ++ + + +R Sbjct: 958 RIPPHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVG 1017 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R+AA V+ + +++T+ G+++G V S+ +EA F Sbjct: 1018 RIAASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054 >gi|218529177|ref|YP_002419993.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum CM4] gi|218521480|gb|ACK82065.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum CM4] Length = 1173 Score = 1027 bits (2655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/1057 (50%), Positives = 713/1057 (67%), Gaps = 39/1057 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL VHSSYSLLEG + +++ AAD+QPA+A+TDTNNLF ALEFS+ A AG Sbjct: 6 KEVGFVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAG 65 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IQPI G QL I + M + P +IVLL GY L+ L SR + Sbjct: 66 IQPIAGLQLTICFEAPDPMA---RLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLG 122 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVN 185 + + +S L E EGLI LTGG SGP+D + A +RL K FG+ LYV Sbjct: 123 AAPNLAVSVL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVE 181 Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QRH G D R E ++++LA T+ L +VATN F DY+AHD L+A+A +VS + Sbjct: 182 IQRH-GLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDE 240 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI------- 296 R R+TP H R+ M+ +F DLP+AL +VEIA RCS+ + PILP F Sbjct: 241 RRRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEA 300 Query: 297 -----------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 E + +E EL +A AGLE+RL Q A G+ +DYR RL FEL Sbjct: 301 PPMADALAEAAETPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFTEEDYRARLKFEL 360 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFE Sbjct: 361 DVIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFE 420 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPDFDIDFC + R+ VIRYVQ +YG +V QIITFG+L A+ LRDVGR L Sbjct: 421 RFLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVL 480 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 +MPY QVD+L KL+P +PA+PV+L QAI + + ++A +P V RL+EIS+KLEGL+RH Sbjct: 481 EMPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRH 540 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 ASTHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ Sbjct: 541 ASTHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRC 600 Query: 585 SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 D L QRG++VDL+ IP DD +TY + T+ +FQ+ES+GMR+AL MQ D +EDII Sbjct: 601 CTDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDII 660 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 ALV+LYRPGP+ NI VY RK G+ E HP+++P+LKET G+I+YQEQVM++A+ Sbjct: 661 ALVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAK 720 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 +L+GY+L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K A IF+LLAKFADYG Sbjct: 721 VLAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYG 780 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++ I + PPS Sbjct: 781 FNKSHAAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPS 840 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 VNT V F V + RI Y+LAAIKGVG + I+ A DKPF L F R++ + +N+R Sbjct: 841 VNTSGVVFDVREGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKR 900 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 LE+L+ AGALDC R + +++ + K AQ + T+ ++F G S + L Sbjct: 901 TLENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFG---GVASVDVAL 957 Query: 941 EKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--- 995 E + + + E +GF+ SGHPLD Y PIL K+ ++ + + +R Sbjct: 958 RIPPHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVG 1017 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R+AA V+ + +++T+ G+++G V S+ +EA F Sbjct: 1018 RIAASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054 >gi|188580262|ref|YP_001923707.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001] gi|179343760|gb|ACB79172.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001] Length = 1173 Score = 1025 bits (2651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/1057 (49%), Positives = 714/1057 (67%), Gaps = 39/1057 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL VHSSYSLLEG + + +++ AAD+QPA+A+TDTNNLF ALEFS+KA G Sbjct: 6 KEVGFVHLHVHSSYSLLEGGVKVADLVKAAAADRQPALALTDTNNLFGALEFSEKAAGTG 65 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IQPI G QL + + M + P +IVLL GY L+ L SR + Sbjct: 66 IQPIAGLQLTVCFEAPDPMA---RMPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLG 122 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 + + +S L E +GLI LTGG +GP+D + + A +RL K FG DRLYV Sbjct: 123 AAPNLAVSAL-EGNVDGLIGLTGGLTGPLDTSLRAGRADQAARRLEVLKDAFGEDRLYVE 181 Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QRH G D R E ++++LA + L +VATN F DY+AHD L+A+A +VS + Sbjct: 182 IQRH-GLDDERAVERELLRLADGNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDE 240 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD- 302 R R+TP H R+ M+ +F DLP+AL +VEIA RC+ + PILP F + Sbjct: 241 RRRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCAVRARTRKPILPNFASVAAGEA 300 Query: 303 -----------------IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 + +E EL +A AGLE+RL Q A G+ +DYR RL FEL Sbjct: 301 PPMAEALAEAADAPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFSEEDYRARLKFEL 360 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFE Sbjct: 361 DVIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFE 420 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPDFDIDFC + R+ VIRYVQ +YG +V QIITFG+L A+ LRDVGR L Sbjct: 421 RFLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVL 480 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 +MPY QVD+L KL+P +PA+PV+L QAI + + ++A +P V RL+EIS+KLEGL+RH Sbjct: 481 EMPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRH 540 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 ASTHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ Sbjct: 541 ASTHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRC 600 Query: 585 SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 D L QRG++VDL+ IP DD +TY + T+ +FQ+ES+GMR+AL MQ D +EDII Sbjct: 601 CTDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDII 660 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 ALV+LYRPGP+ NI VY RK G+ E HP+++P+LKET G+I+YQEQVM++A+ Sbjct: 661 ALVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAK 720 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 +L+GY+L EAD+LRRAMGKKIK EMD Q++RF+ G ++GI++ A IF+LLAKFADYG Sbjct: 721 VLAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCLESGIAQAKANEIFDLLAKFADYG 780 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAAAYA+++YQTA++K +YPVEFLAA+MTL++DN +K+ +F QDA++ I + PPS Sbjct: 781 FNKSHAAAYALVTYQTAYLKANYPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPS 840 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 VNT V F V + RI Y+LAAIKGVG + I+ A DKPF L F R++ + +N+R Sbjct: 841 VNTSGVVFDVKEGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKR 900 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 LE+L+ AGALDC R + +++ + K AQ + T+ ++F G S + L Sbjct: 901 TLENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFG---GVASADVAL 957 Query: 941 EKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--- 995 E + + + E +GF+ SGHPLD Y PIL K+ ++ + + +R + Sbjct: 958 RIPPHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGSASVG 1017 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R+AA V+ + +++T+ G+++G V S+ +EA F Sbjct: 1018 RIAASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054 >gi|220927035|ref|YP_002502337.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060] gi|219951642|gb|ACL62034.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS 2060] Length = 1158 Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/1042 (50%), Positives = 714/1042 (68%), Gaps = 23/1042 (2%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL HSSYSLLEGAL + +++ +AD+QPA+A+TDTNNLF ALEFS+KA +AG Sbjct: 5 KDVGFVHLHTHSSYSLLEGALKIGDLVKAASADRQPALALTDTNNLFGALEFSEKAASAG 64 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IQPI G QL + + G +P +P++VLL GY L+ L S Y Sbjct: 65 IQPIAGIQLSVLFEAPEPGQRGGPSP---LPNLVLLAKDETGYGHLLRLASLAYFDGPLG 121 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 ++ R+ + L + GLI LTGG GP+D + A RL + FG D LYV Sbjct: 122 EAPRVPIEALTDCAP-GLIALTGGFDGPLDSCLRAARPEHAASRLARLLEAFGEDHLYVE 180 Query: 186 LQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +QRH D R E++++ LA H LPLVATN F EDYEAHD L+A+A +VS + Sbjct: 181 IQRHGLPDERTVEAELIALADRHGLPLVATNEPFFAKPEDYEAHDALLAIAEGRIVSDEK 240 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDI 303 R R+TP H K R+ MV +F DLP+AL +VEIA RC++ ++ PILP F + Sbjct: 241 RRRLTPRHDFKTRAAMVELFRDLPDALAASVEIAMRCAYRVRTRKPILPSFGLPAGHAPA 300 Query: 304 QK----EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 Q +E EL+ +A AGL RLAQ A+G QDYR RL +E+ +I +MKF GYFLI Sbjct: 301 QAAEFLDEAGELKRQAEAGLTRRLAQAGPAEGLTEQDYRDRLAYEIGIITKMKFPGYFLI 360 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V+DFI+WAK N+IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP+R+SMPDFD Sbjct: 361 VSDFIKWAKANDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNPERVSMPDFD 420 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC R+ VI YVQ++YG +VAQIITFG+L A+ LRDVGR L+MPY QVD+L KL+ Sbjct: 421 IDFCVVGRERVIEYVQSRYGERQVAQIITFGTLLARGVLRDVGRVLEMPYGQVDKLTKLV 480 Query: 480 PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P +PA+PV+L QAI + R + A +P V RL+EI++KLEGL+RHASTHAAG+VIGDRP Sbjct: 481 PQNPANPVTLAQAIEGEPRLQSAMEEEPVVARLMEIAKKLEGLHRHASTHAAGVVIGDRP 540 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 L +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ + D L +RG+++DL Sbjct: 541 LEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTVLRGATDLLKRRGIEIDL 600 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD TY L +G+FQ+ES+GMR+AL M D ED+IALV+LYRPGP+ NI Sbjct: 601 ATLPIDDEHTYERLRKGEVVGVFQVESAGMRKALVEMCADRFEDLIALVALYRPGPMANI 660 Query: 659 VVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 VY RK G+ E + HP ++P+L ET G+I+YQEQVM++A++L+GYSL +AD+LR Sbjct: 661 PVYCERKLGRDAGNEAVWYPHPKLEPILAETFGIIVYQEQVMEVAKVLAGYSLGDADLLR 720 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKKIK EMD Q++RF+ GA + G+ + A IF+LLAKFADYGFNKSHAAAYA+I+Y Sbjct: 721 RAMGKKIKAEMDAQRDRFLKGAMERGLDRAKADEIFDLLAKFADYGFNKSHAAAYALITY 780 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEFLAASM+ ++D+ +K+ + QDA++ +I++ PPSVN V F+V D Sbjct: 781 QTAYLKANYPVEFLAASMSQDLDDTDKLAELRQDAQRLDIKVEPPSVNRSGVTFEVHDGT 840 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 I Y+LAAIKGVG I++A D+PF L DF R++ + +N+R LESLV AGALD Sbjct: 841 IRYALAAIKGVGRAAVEAIVQARGDRPFRDLGDFARRLNPRLVNKRTLESLVGAGALDEI 900 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRF 952 R + +++ + + AQ + ++F G + + L + E ++ R Sbjct: 901 EPDRARAFAAIEPMLRLAQGALEAEAVGMSDMFG---GVAASDVALRIPAYEPWPAADRL 957 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTR 1010 + E +GF+ SGHPLD Y +L+K+ ++ + E ++R GN++ R+AA V+ + +++T+ Sbjct: 958 KKEYEAVGFFLSGHPLDEYGDLLKKLRVQTWVEFCRSVRAGNSVGRVAATVLDRSERRTK 1017 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 G++IG V S+ +EA F Sbjct: 1018 TGNKIGIVNLSDQTGHFEAIVF 1039 >gi|254560015|ref|YP_003067110.1| DNA polymerase III subunit alpha [Methylobacterium extorquens DM4] gi|254267293|emb|CAX23125.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens DM4] Length = 1173 Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/1057 (49%), Positives = 712/1057 (67%), Gaps = 39/1057 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K F+HL VHSSYSLLEG + +++ AAD+QPA+A+TDTNNLF ALEFS+ A AG Sbjct: 6 KEVGFIHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAG 65 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IQPI G QL I + M + P +IVLL GY L+ L SR + Sbjct: 66 IQPIAGLQLTICFEAPDPMA---RLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLG 122 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVN 185 + + +S L E EGLI LTGG SGP+D + A +RL K FG+ LYV Sbjct: 123 AAPNLAVSAL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVE 181 Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QRH G D R E ++++LA T+ L +VATN F DY+AHD L+A+A +VS + Sbjct: 182 IQRH-GLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDE 240 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD- 302 R R+TP H R+ M+ +F DLP+AL +VEIA RCS+ + PILP F + Sbjct: 241 RRRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEA 300 Query: 303 -----------------IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 + +E EL +A AGL++RL Q A G+ +DYR RL FEL Sbjct: 301 PPMADALAEAAQTPVQAVAADEPTELCRQAEAGLKLRLKQHGTAPGFTEEDYRARLKFEL 360 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI +MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFE Sbjct: 361 DVIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFE 420 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPDFDIDFC + R+ VIRYVQ +YG +V QIITFG+L A+ LRDVGR L Sbjct: 421 RFLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVL 480 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 +MPY QVD+L KL+P +PA+PV+L QAI + + ++A +P V RL+EIS+KLEGL+RH Sbjct: 481 EMPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRH 540 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 ASTHAAG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ Sbjct: 541 ASTHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRC 600 Query: 585 SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 D L QRG++VDL+ IP DD +TY + T+ +FQ+ES+GMR+AL MQ D +EDII Sbjct: 601 CTDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDII 660 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 ALV+LYRPGP+ NI VY RK G+ E HP+++P+LKET G+I+YQEQVM++A+ Sbjct: 661 ALVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAK 720 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 +L+GY+L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K A IF+LLAKFADYG Sbjct: 721 VLAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYG 780 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++ I + PPS Sbjct: 781 FNKSHAAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPS 840 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 VNT V F V + RI Y+LAAIKGVG + I+ A D PF L F R++ + +N+R Sbjct: 841 VNTSGVVFDVREGRILYALAAIKGVGRSAVESIVAARGDTPFKDLACFARRLNPRHVNKR 900 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 LE+L+ AGALDC R + +++ + K AQ + T+ ++F G S + L Sbjct: 901 TLENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFG---GVASVDVAL 957 Query: 941 EKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--- 995 E + + + E +GF+ SGHPLD Y PIL K+ ++ + + +R Sbjct: 958 RIPPHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVG 1017 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R+AA V+ + +++T+ G+++G V S+ +EA F Sbjct: 1018 RIAASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054 >gi|170744048|ref|YP_001772703.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46] gi|168198322|gb|ACA20269.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46] Length = 1168 Score = 1019 bits (2634), Expect = 0.0, Method: Compositional matrix adjust. Identities = 521/1052 (49%), Positives = 705/1052 (67%), Gaps = 33/1052 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL HSSYSLLEGAL L +++ A D+QPA+A+TDTNNLF ALEFS+KA G Sbjct: 5 KDVGFVHLHTHSSYSLLEGALKLGDLVKAAAGDRQPALALTDTNNLFGALEFSEKAAGLG 64 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IQPI G QL + + G P P +VLL GY L++L S Y Sbjct: 65 IQPIAGIQLSVLFEAPEPGQRGGPAPLP---HLVLLAKDETGYGHLLKLASLAYFDGPLG 121 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 ++ R+ + L++ GLI LTGG GP+D + A RL + FG D LYV Sbjct: 122 EAPRVPVEALRDC-APGLIALTGGPGGPLDSCLRAARPEHAAGRLARLVEAFGEDHLYVE 180 Query: 186 LQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +QRH D R E++++ LA H LPLVATN F EDYEAHD L+A+A +VS + Sbjct: 181 IQRHGLPDERAVEAELIGLADRHGLPLVATNEPFFARPEDYEAHDALLAIAEGRLVSDEK 240 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--------- 295 R R+TP H K R+ M +F DLP+AL +VEIA RC++ ++ PILP F Sbjct: 241 RRRLTPRHDFKTRAAMAELFRDLPDALAASVEIAMRCAYRVRTRKPILPSFGVSGGPAAR 300 Query: 296 ------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 D +E EL+ +A AGL RLA+ A+G QDYR RL +E+ +I Sbjct: 301 DAAQAGSPAPAGDPALDEAGELKRQAEAGLARRLAEAGPAEGLSEQDYRDRLAYEIGIIT 360 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +MKF GYFLIV+DFI+WAK N+IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLN Sbjct: 361 KMKFPGYFLIVSDFIKWAKANDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLN 420 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC R+ VI YVQ++YG +VAQIITFG+L A+ LRDVGR L+MPY Sbjct: 421 PERVSMPDFDIDFCVVGRERVIEYVQSRYGEAQVAQIITFGTLLARGVLRDVGRVLEMPY 480 Query: 470 SQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 QVD+L KL+P +PA+PV+L QAI + R + A +P V RL+EI++KLEGL+RHASTH Sbjct: 481 GQVDKLTKLVPQNPANPVTLVQAIEGEPRLQSAMEEEPVVARLMEIAKKLEGLHRHASTH 540 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VIGDRPL LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ + D Sbjct: 541 AAGVVIGDRPLEALVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTVLRGATDL 600 Query: 589 LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 L QRG+ +DL+ +P DD TY L +G+FQ+ES+GMR+AL M D ED+IALV+ Sbjct: 601 LEQRGITLDLAALPLDDERTYERLRKGEVVGVFQVESAGMRKALVEMCADRFEDLIALVA 660 Query: 649 LYRPGPIDNIVVYNNRKNGK----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 LYRPGP+ NI VY RK G+ E + HP ++P+L ET G+I+YQEQVM++A++L+G Sbjct: 661 LYRPGPMANIPVYCERKLGRDAGNEAVWYPHPKLEPILAETFGIIVYQEQVMEVAKVLAG 720 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL +AD+LRRAMGKKIK EMD Q++RF+ GA + G+ K A IF+LLAKFADYGFNKS Sbjct: 721 YSLGDADLLRRAMGKKIKAEMDAQRDRFLKGAMERGLDKAKANEIFDLLAKFADYGFNKS 780 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 HAAAYA+I+YQTA++K +YPVEFLAASM+ ++D+ +K+ + QDA++ I++ PPSVN Sbjct: 781 HAAAYALITYQTAYLKANYPVEFLAASMSQDLDDTDKLAELRQDAQRLAIKVEPPSVNRS 840 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 V F+V D I Y+LAAIKGVG I++A D+PF L DF R++ + +N+R LES Sbjct: 841 GVTFEVHDGTIRYALAAIKGVGRAAVEAIVQARGDRPFRDLGDFARRLNPRLVNKRTLES 900 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE--K 942 LV AGALD R + +++ + + AQ + T ++F G + + L Sbjct: 901 LVGAGALDEIEPDRARAFAAIEPMLRLAQGALEAETVGMTDMFG---GVAAATVALRIPP 957 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAM 1000 + ++ R + E +GF+ SGHPLD Y +L+K+ ++ + E ++R GN++ R+AA Sbjct: 958 YDPWPAADRLKKEYEAVGFFLSGHPLDEYGELLKKLRVQTWVEFCRSVRAGNSVGRVAAT 1017 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V+ + +++T+ G+++G V S+ +EA F Sbjct: 1018 VLDRSERRTKTGNKLGIVNLSDQTGHFEAIVF 1049 >gi|182678571|ref|YP_001832717.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182634454|gb|ACB95228.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 1159 Score = 1012 bits (2616), Expect = 0.0, Method: Compositional matrix adjust. Identities = 528/1046 (50%), Positives = 695/1046 (66%), Gaps = 28/1046 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F+HL VHS++SL EGA+ + ++ AAD PA+A+TDTNNLF ALEFS+K +GI Sbjct: 4 SVGFIHLHVHSAFSLREGAIKIEKLVKLAAADAMPALALTDTNNLFGALEFSEKLVKSGI 63 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 QPI G QL +D D M +G+ ++VLL GY L+ L SR +L Sbjct: 64 QPIAGLQLTVDFGDGAAMAPRGEENGAGRANLVLLAQDEAGYVNLMHLTSRAWLDPVPGD 123 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + L +GLI L+GG GP+DRAF + A R LF +RLYV LQ Sbjct: 124 PPHVRFDQLHG-HADGLIALSGGPDGPLDRAFAAQRPEQAVLRAQHLAALFPNRLYVELQ 182 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 RH +R E ++ LAY LPL ATN F + DYEAHD L+ +A V+ + R Sbjct: 183 RHSLQAERSNEPLLLDLAYDRSLPLAATNEPYFAAASDYEAHDALLCIAEGAVLGEPQRR 242 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +++P+H LK R+EMV++F+DLPEA NTVEIA RC++ PILPRF + D E Sbjct: 243 QLSPEHRLKTRTEMVALFADLPEATANTVEIAMRCAYRPLTRKPILPRFGDTGHAD---E 299 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E ELR +A AGLE RLA A G+ DYR RL FEL++I +M+F GYFLIVADFI++ Sbjct: 300 EAKELRRQAEAGLEKRLAAHPPAPGFTEDDYRARLAFELDIIVKMQFPGYFLIVADFIKY 359 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK +IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQDR Sbjct: 360 AKSQDIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQDR 419 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV+ +YG ++VAQIITFGS A+ +R+VGR L+MP QVD+L KL+P +PA P Sbjct: 420 RDEVIAYVRRRYGEDKVAQIITFGSFLARGVMRNVGRVLEMPLGQVDKLAKLVPQNPAAP 479 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 VSL QAI + R +EA ++P V R+L I++ LEGLY +ASTHAAGIVIGDRPL LVP+ Sbjct: 480 VSLKQAIEGEPRLQEAASSEPRVARMLTIAETLEGLYSNASTHAAGIVIGDRPLEHLVPL 539 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD +SD+P TQFNMKW+E AGL+KFDFLGLKTLT L + LA+RG+ VDL+ IP DD Sbjct: 540 YRDPKSDMPATQFNMKWVEPAGLVKFDFLGLKTLTTLSTCVKLLAKRGIIVDLAKIPLDD 599 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY +L T+G+FQLES+GMR+AL M+ D EDIIALV+LYRPGP+ NI Y K Sbjct: 600 QKTYAMLGRGETVGVFQLESAGMRKALVEMRADHFEDIIALVALYRPGPMANIPTYCAVK 659 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G+EK IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK EM Sbjct: 660 LGEEKADYIHPKIEHILKETFGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAEM 719 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D Q+ RF++G+ G++K A IF+LLAKFADYGFNKSHAAAYA+I+YQTAW K ++PV Sbjct: 720 DAQRSRFVTGSVDRGLTKKQADEIFDLLAKFADYGFNKSHAAAYALIAYQTAWFKANHPV 779 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNR---------- 834 EFLAASMTL+ N +K+ +FC +AR+ I + P + VDF V +N+ Sbjct: 780 EFLAASMTLDKSNTDKLAEFCNEARRLGIPVDRPCIQKSGVDFDVALENKGAGQESKESE 839 Query: 835 -----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I Y+L+AIKGVG+ A ++ A A + F L DF R++ +++N+R+LE LV AG Sbjct: 840 NANLHIRYALSAIKGVGSAQAEALVAARAGRSFKDLSDFTHRLNPREINKRMLECLVAAG 899 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D R ++ +++ + A + +F G + I + + Sbjct: 900 AFDTLDKDRAKIFATIETLLAMANRRCEEEAAGQSVLFG---GPAASAIIFPQTDPWPLA 956 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIK---GYEESVATIRGNNIRLAAMVVSKQQ 1006 R + E +GF+ SGHPLD Y IL ++ ++ + V + + RLAA V+ +++ Sbjct: 957 ERLQREFDAVGFFLSGHPLDGYASILSRLKVQRWATFARQVKQGQASAARLAATVLDRKE 1016 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++T+ G+++G V S+ + +YEA F Sbjct: 1017 RRTKSGTKMGIVQLSDQSGQYEAILF 1042 >gi|260432607|ref|ZP_05786578.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis ITI-1157] gi|260416435|gb|EEX09694.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis ITI-1157] Length = 1166 Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/1057 (48%), Positives = 699/1057 (66%), Gaps = 47/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP F+HL+VH+ YSLLEGA+ L + A+ PA+A+TDTNN+F ALEFS A Sbjct: 1 MSSSPRFIHLRVHTEYSLLEGAVRLKKLPGLCASMDMPAVAVTDTNNMFCALEFSVTASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPIIGCQ+D+ + G P P P +VLL + GY+ L++L S +Y+ D+ Sbjct: 61 AGIQPIIGCQVDL----SYVTAQPGDKPTPPAP-VVLLAQSETGYENLMKLSSCLYV-DK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q ++ L LQ + GLI LTGG GP+ R AE + +F DRLY+ Sbjct: 115 GGQLPQVTLDELQR-HSAGLICLTGGPDGPVGRLLQQGQRPAAEALVDRLAAMFPDRLYI 173 Query: 185 NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D R E V++AY LPLVATN+ F + + YEAHD L+ +A Sbjct: 174 ELQRHPGEDGQPEAERLTERGHVEMAYAKNLPLVATNDVYFPTSDMYEAHDALICIAEGA 233 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q++ R R+T HY K+ EM ++F+DLPEA+ENTVEIARRC+F+ PILP+F + Sbjct: 234 YVDQQEGRRRLTAQHYFKSPQEMATLFADLPEAIENTVEIARRCAFMAYKRDPILPKFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E + ELR +A GL+ RLA I ++Y++RLDFEL +I M F GYF Sbjct: 294 DEVE--------ELRRQANEGLQKRLA--VIPHAVSPEEYQKRLDFELGIIESMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK++NIPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKEHNIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ A+ D+ R RE + VDRLL Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALKDEPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G + Sbjct: 524 RPLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLIRKSGRDL 583 Query: 597 ------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 +++ IP DD TY L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 HIAADGTQLYDPPEGAVNEINAIPLDDPATYKLYSAAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGQRQIQSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKIKE MD ++ +F +GA+ NG+ A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEAGAAANGVDAKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + ++ R+ + + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PP VN F V D ++ Y+L A+K VG +++ DKPF +L DF RVD KK+ Sbjct: 824 PPCVNRSQATFDVVDGQLVYALGALKNVGVEAMNLVVQGRGDKPFVNLFDFARRVDLKKV 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE + AGA D +R ++ +SL+ + +Y+ + + + + ++F E G + Sbjct: 884 GKRPLEMMARAGAFDQLDKNRRRVFESLEQLVQYSAAIHEQKNSNQVSLFG-EAGDDLPE 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-- 995 L K + R E + +GFY SGHPLD Y P L++ + +E R Sbjct: 943 PRLSKSPDWLPAERLSEEFKAIGFYLSGHPLDDYLPALKRKQVMTLDEVTEKARSGPFVA 1002 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ KG+R + S+P YE F Sbjct: 1003 KMAGVVAGRQERKSAKGNRFAFAQLSDPTGAYEVTLF 1039 >gi|296447359|ref|ZP_06889286.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b] gi|296255138|gb|EFH02238.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b] Length = 1150 Score = 1008 bits (2606), Expect = 0.0, Method: Compositional matrix adjust. Identities = 518/1037 (49%), Positives = 690/1037 (66%), Gaps = 25/1037 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VH+++SL EGAL+++ ++ D+ PA+AITD+NNLF ALEFS+KA AG+QP Sbjct: 6 GFVHLHVHTAFSLREGALTISRLIGLAEKDEMPALAITDSNNLFGALEFSEKAAKAGLQP 65 Query: 70 IIGCQLDIDMQDNLK-MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I QL +D D + +T G+ +IVL+ + GY LI L + +L + ++ Sbjct: 66 IPAIQLTVDFGDGTQSLTADGRG------NIVLIAKSEAGYANLIRLATCAWLGPELGET 119 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + + L +E LI LTGG G +D + A RL + LF RLYV LQR Sbjct: 120 PHVTMEQLSASSSE-LIALTGGPEGGLDTLLARGRPEQARARLEALEPLFDGRLYVELQR 178 Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G D R E Q++ LA+ LPLVA N F + ED+EAHD L+ +A TV +R Sbjct: 179 H-GLDHERRVEPQLLDLAFRRGLPLVAANEPFFAAAEDHEAHDALLCIADGTVTGVAERR 237 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDI 303 R++P HY K R EM+++F+DLPEA +TVEIARR + PI+PRF+ E + + Sbjct: 238 RLSPQHYFKTRKEMLALFADLPEATASTVEIARRVAVRATKRKPIMPRFMRDGEGGGEAL 297 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E ELR +A GLE RLA A G + Y RL FEL+ I +M+F GYFLIV+DF Sbjct: 298 EVIETRELRRQAQEGLEARLATHPPAPGQTRETYEARLAFELDTIEKMRFPGYFLIVSDF 357 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK IPVGPGRGSGAGS+ AYALTITD+DPLRF L FERFLNP+RMSMPDFDIDFC Sbjct: 358 IKYAKSKGIPVGPGRGSGAGSLVAYALTITDLDPLRFGLFFERFLNPERMSMPDFDIDFC 417 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q RR+EVI YV+++YG +RVAQIITFGS A+ LR VGR L+MP QVD+L KL+P +P Sbjct: 418 QSRREEVIEYVRDRYGADRVAQIITFGSFLARGVLRSVGRVLEMPLGQVDKLAKLVPQNP 477 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A PVSL +A+A + + REA D V RL +I+ LEGLY +ASTHAAG+VI DRPL L Sbjct: 478 AKPVSLAEAVAGELKLREAIAEDGKVARLFKIAGSLEGLYSNASTHAAGVVIADRPLDTL 537 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD +SD+P TQFNMKW ++AGLIKFDFLGLKTLT+L ++D + +R DL+ IP Sbjct: 538 VPLYRDPKSDMPATQFNMKWADEAGLIKFDFLGLKTLTVLATAVDLVRRRVADFDLAAIP 597 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D +TY +L T+G+FQLES+GMR+AL M+ D EDIIALV+LYRPGP+ NI Y Sbjct: 598 LEDPQTYEMLGRGETVGVFQLESAGMRKALVDMRADHFEDIIALVALYRPGPMANIPTYC 657 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K G E+ IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 658 AVKLGDEEADYIHPKIEHILKETFGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 717 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMD Q+ERF+SGA + G+ A IF+LLAKFADYGFNKSHAAAYA+I++QTAW K H Sbjct: 718 AEMDAQRERFVSGAVERGLEPAKASEIFDLLAKFADYGFNKSHAAAYALIAFQTAWFKAH 777 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYY 837 YPVEFLAASMTL+ N +K+ +F +AR+ I + PPS+ VDF V G I Y Sbjct: 778 YPVEFLAASMTLDKGNTDKLAEFRNEARRLGIAVEPPSIRRSGVDFDVAPGADGALAIRY 837 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +L+A+KGVG A I+ + D+PF L DF R++ +++N++VLE+L GA D Sbjct: 838 ALSAVKGVGEGQAASIVRSRGDEPFRGLGDFARRINPREVNKKVLENLACCGAFDEMESD 897 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R +++ +++ I A ++R +F G S+++ L K +S + + E Sbjct: 898 RARVVGAIETILAAANRTAEDRQLGQNALFG---GGPSEELALPKAEPWTASEKLKREFD 954 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRI 1015 GF+ +GHPLD + +L K + + E A ++ RLAA+V+ + +++T+ GS++ Sbjct: 955 AAGFFLTGHPLDSFAGVLAKRRLTRWAEFTAAVKRGATAARLAAVVLDRAERRTKSGSKM 1014 Query: 1016 GWVTFSEPAKEYEANFF 1032 G V S+ + +YEA F Sbjct: 1015 GIVQLSDDSGQYEAILF 1031 >gi|304321355|ref|YP_003854998.1| DNA polymerase III subunit alpha [Parvularcula bermudensis HTCC2503] gi|303300257|gb|ADM09856.1| DNA polymerase III, alpha subunit [Parvularcula bermudensis HTCC2503] Length = 1152 Score = 1003 bits (2594), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/1037 (50%), Positives = 680/1037 (65%), Gaps = 27/1037 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +HSSYSL EGA+ ++ L Q PA+A+TDTNNLF ALE ++ A G+QP Sbjct: 4 TFVHLHLHSSYSLAEGAIPVSKALQLAKGHQMPALAVTDTNNLFGALEVAEILSAEGVQP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G +L + + + ++ + SIVLL A G++RL+ L S +L ++ Sbjct: 64 IPGIELKVATESAEPVRDEAGN----LASIVLLAQNAVGFERLMALSSEAFLTPLEGETT 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + LS + + TEGLI L+GG+ GPIDR A L F R YV LQRH Sbjct: 120 GVPLSAVLQR-TEGLICLSGGALGPIDRLLAEGRCSEALALLDRMAAAFPQRFYVELQRH 178 Query: 190 RGYDRY-------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 +DR E +V+ AY LP+VATNN F S D+ AHD L+ +A +S+ Sbjct: 179 PHHDRTDQQGRYPEERALVEAAYARSLPIVATNNVYFPSPADHAAHDALLCIAGGRYLSE 238 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR V+ DHY K+ EM +F DLPEA+E TVE+A+RC+F + H PILP F + Sbjct: 239 VDRRLVSEDHYFKSAEEMSGLFKDLPEAIETTVEVAQRCAFRPRTHQPILPSFAGDLAGE 298 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + ELR +A GL RLA I QDY RL+ EL +I +M F GYFLIVAD Sbjct: 299 VA-----ELRRQAEEGLAARLAD--IPAAAPHQDYYDRLERELGIIEKMGFPGYFLIVAD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK IPVGPGRGSGAGS+ AYALTITD+DPLRF LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FIQWAKSAGIPVGPGRGSGAGSLVAYALTITDLDPLRFHLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRRDEVI YV+++YG +RVAQIITFG LQA+A LRDVGR LQMP+ QVDRLCK++PN+ Sbjct: 412 CQDRRDEVIAYVRDRYGADRVAQIITFGKLQARAVLRDVGRVLQMPFGQVDRLCKMVPNN 471 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PV+L +A+ + RFRE R DP V L++ + +LEGLYRHASTHAAG+VIGDRPL++ Sbjct: 472 PANPVTLKEAVDGEPRFREERERDPMVGTLIDTALRLEGLYRHASTHAAGVVIGDRPLTE 531 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVP+YRD RSD+P TQ+NMKW+E AGL+KFDFLGLKTLT++Q++LDFL G +D+S I Sbjct: 532 LVPLYRDSRSDMPATQYNMKWVEPAGLVKFDFLGLKTLTVIQRALDFLKADGTDLDISAI 591 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L +G+FQLES+GMR L+G+Q DC+EDIIALVSLYRPGP+DNI Y Sbjct: 592 PLDDPATYDMLGRGAAIGVFQLESAGMRATLKGLQADCLEDIIALVSLYRPGPMDNIPTY 651 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK G+E +HPL++ +LKET GVIIYQEQVMQIAQ+L+GYSL EAD+LRRAMGKK Sbjct: 652 IERKAGREPPDYLHPLLEDVLKETYGVIIYQEQVMQIAQILAGYSLGEADLLRRAMGKKK 711 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 KEEMDKQK RF+ GA++ G+S A IFEL+AKFA YGFNKSHAAAYA +SYQTA++K Sbjct: 712 KEEMDKQKIRFVDGAAEKGVSAAKAEGIFELVAKFAGYGFNKSHAAAYAWVSYQTAYLKA 771 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 ++P FLAASM+L+ +K+ F +A++ + + PP VN DF V + Y+L A Sbjct: 772 NHPAAFLAASMSLDQSLTDKLSVFVAEAKRCGVVVEPPCVNESQADFAVSGETLRYALGA 831 Query: 842 IKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K VG + + E + PF L D RVD +K+ +R LE L AGA D G R Sbjct: 832 LKNVGAEGMQVLTTERARGGPFRDLYDLAERVDLRKVGKRSLEQLARAGAFDALGVDRAS 891 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + + D + +Y+ + R + +F +G + L + + R E E+ L Sbjct: 892 AMAAADFLLRYSAAAAEERGSAQAGLFGGMAEGESLARPALPQCPPWPNVERLEQERTAL 951 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN----NIRLAAMVVSKQQKKTRKGSRI 1015 GFY SGHPLD + +L G Y + +A++ G ++ LA V +++++ G Sbjct: 952 GFYMSGHPLDDFDSLLAAKGAVSYAD-IASVVGEGESRHVCLAGAVNEVTRRRSKSGKPF 1010 Query: 1016 GWVTFSEPAKEYEANFF 1032 WV S+ + ++E F Sbjct: 1011 AWVRLSDRSGDFEVTVF 1027 >gi|260425354|ref|ZP_05779334.1| DNA polymerase III subunit alpha [Citreicella sp. SE45] gi|260423294|gb|EEX16544.1| DNA polymerase III subunit alpha [Citreicella sp. SE45] Length = 1177 Score = 1003 bits (2592), Expect = 0.0, Method: Compositional matrix adjust. Identities = 517/1062 (48%), Positives = 694/1062 (65%), Gaps = 56/1062 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VH+ YSLLEGA+ L + A + PA+A+TDTNNLFSALEFS A AG+Q Sbjct: 7 PRFIHLRVHTEYSLLEGAVRLKKLPGLCEAMEMPAVAVTDTNNLFSALEFSVTASGAGVQ 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGCQ+D+ + G+ P P P +VLL GY+ L++L SR+Y+ G + Sbjct: 67 PIIGCQVDLRYLN----PAPGERPKPPAP-VVLLAQNERGYENLMKLNSRLYMRHDG-EF 120 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + L L+ + ++GLI L+GG GP+ R N A+ L ++FGDRLYV LQR Sbjct: 121 PHVLLDELETL-SDGLICLSGGPDGPVGRLLRENHRAAAQVLLTRLHQIFGDRLYVELQR 179 Query: 189 HRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 H G D R E V++AY LPLVATN+ F YEAHD ++ +A V Q Sbjct: 180 HPGEDGLPEAERLSERGHVEMAYEMGLPLVATNDVYFPKPAMYEAHDAMICIAEGAYVDQ 239 Query: 243 KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R R+TP HYLK EMV++F+DLPEA+ENTVEIARRC+F+ PILP+F + E Sbjct: 240 QQPRRRLTPQHYLKTPQEMVTLFADLPEAIENTVEIARRCAFMAYRRDPILPKFADDEV- 298 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ELR A GL+ RLA I + Y++RLDFEL +I M F GYFLIVA Sbjct: 299 -------AELRRMANEGLQRRLA--VIPHAVTVEQYQERLDFELGIIEGMGFPGYFLIVA 349 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID Sbjct: 350 DFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDID 409 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRR+EVIRYVQ KYGH++VAQIITFG+L +K A+RDVGR LQMPY QVDRL K+IP Sbjct: 410 FCMDRREEVIRYVQEKYGHDKVAQIITFGALLSKMAVRDVGRVLQMPYGQVDRLSKMIPV 469 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + PVS++ A+ D+ R RE + VDRLL Q++EGL R A THAAG+VI DRP Sbjct: 470 EGVKPVSIEKALQDEPRLREEARNEEVVDRLLTYGQQIEGLLRSAGTHAAGVVIADRPTD 529 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---- 596 +LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G + Sbjct: 530 ELVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKGGRPIHVAA 589 Query: 597 --------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++LIP DD TY L T+ +FQ+ESSGM AL+ M+P CIED Sbjct: 590 DGTQLYEPAEGGENQMNLIPLDDERTYRLYADAKTVAVFQVESSGMMDALKRMKPTCIED 649 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 I+ALV+LYRPGP++NI VY KNG +I S+HP ID +L ETQG+I+YQEQVMQIAQ++ Sbjct: 650 IVALVALYRPGPMENIPVYCEVKNGLREITSVHPSIDHILAETQGIIVYQEQVMQIAQVM 709 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GYSL AD+LRRAMGKKIKE MD ++ +F GA++NG+ K A +F+LL KFA+YGFN Sbjct: 710 AGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKATEVFDLLEKFANYGFN 769 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821 KSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + +A++ + +PP V Sbjct: 770 KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLATYFYEAKKGLKLDYVPPCV 829 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA---------SADKPFDSLEDFCSRV 872 N F V ++ Y+L A+K VG R ++E S DKPF ++ DF RV Sbjct: 830 NRSQATFDVDKGKLVYALGALKNVGLEAMRLVVEGRRSVPEDPKSPDKPFVNVFDFARRV 889 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D K++ +R LE L AG D +R ++ +SLD + Y+ V + + + ++F E G Sbjct: 890 DLKRVGKRPLEMLARAGCFDQLDRNRRRIFESLDALVAYSAAVHEQKHSAQVSLFG-EAG 948 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + L + R E + +GFY SGHPLD Y P L++ + +++ RG Sbjct: 949 DDLPEPRLSPVPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRRDVMLLDDAENKARG 1008 Query: 993 NN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++LA +V +Q++K+ KG+R + S+P+ YE F Sbjct: 1009 GTCLVKLAGVVAGRQERKSAKGNRFAFAQLSDPSGAYEVTIF 1050 >gi|315499828|ref|YP_004088631.1| DNA polymerase iii, alpha subunit [Asticcacaulis excentricus CB 48] gi|315417840|gb|ADU14480.1| DNA polymerase III, alpha subunit [Asticcacaulis excentricus CB 48] Length = 1142 Score = 1002 bits (2590), Expect = 0.0, Method: Compositional matrix adjust. Identities = 518/1038 (49%), Positives = 686/1038 (66%), Gaps = 28/1038 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+V S+YSLLEGA+ ++ A + PAIAI D NLF ALEFSQ G+ Sbjct: 2 SDGFVHLRVRSAYSLLEGAIKAYDMGKLAAKAKMPAIAICDRANLFGALEFSQVCKDTGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 QPII C L + KTP +IVL+V +GY L EL S+ YL + Sbjct: 62 QPIIACALPVKGIGGTLSDRWAKTP-----TIVLIVQNEQGYLNLTELSSKAYLDIEATD 116 Query: 128 SVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + W + + EGLI+L+GG GPI+ F N A L FGDR Y+ L Sbjct: 117 EPHVL--WEEVVKRAEGLILLSGGPDGPINPLFKQNQPDEANAALKDMHAAFGDRFYIEL 174 Query: 187 QRHRGYDR------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 QRH G ES +VQ AY H +PLVATN++ F + ++AH+ L+ ++ ST + Sbjct: 175 QRHDGSPHGGIRGDSAESGLVQFAYAHGVPLVATNDAYFADRDMFKAHEALLCISDSTFM 234 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 DR +VT DH+LK M +FSDLPEA +NT+EIARRC+F++ PILPRF Sbjct: 235 GVADRRKVTKDHWLKPPLLMREVFSDLPEACDNTLEIARRCAFLVSKRDPILPRFDTGAG 294 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + E+ EL +A GL++RL Q + + +DY RLD E+ VI +M F GYFLIV Sbjct: 295 ----RSEDEELAFQAREGLKMRLQQ--VEPAFPEEDYWARLDREVGVIQKMGFPGYFLIV 348 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+WAK ++IPVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDI Sbjct: 349 SDFIKWAKAHDIPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDI 408 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YVQ KYG ERVAQIITFG+LQA+A LRD GR +Q+P QVDRLCK++P Sbjct: 409 DFCQERREEVITYVQEKYGRERVAQIITFGTLQARAVLRDTGRVMQLPLGQVDRLCKMVP 468 Query: 481 NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 N+PA+P +L QA+ + R REAR + SV +LL+ + KLEGLYR+ASTHAAGIVIGDR L Sbjct: 469 NNPANPTTLAQAVEIEPRLREARDEEESVAKLLDTALKLEGLYRNASTHAAGIVIGDRSL 528 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 ++LVP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT L ++ +L +RG++VD S Sbjct: 529 TELVPLYRDPRSDIPATQFNMKWVESAGLVKFDFLGLKTLTTLNRAWHYLKKRGLEVDFS 588 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P DD TY LL + ++G+FQLES GMR L M+ IE+I AL+SLYRPGP+DNI Sbjct: 589 TLPLDDKITYELLASGQSIGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNID 648 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y +RK G+ I +HP ++P+L+ET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGK Sbjct: 649 TYVDRKFGRADIDMLHPSLEPVLRETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGK 708 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K KEEMD QK RFISGA + G+ + + +IFEL+ KFA YGFNKSHAAAYA ISYQT W+ Sbjct: 709 KKKEEMDLQKARFISGAKEKGVPEKQSDSIFELVNKFAGYGFNKSHAAAYAFISYQTGWL 768 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K ++PVEF AA+M+L++ N +K+ F QDARQF + I PP +N DF V + + Y+L Sbjct: 769 KANHPVEFFAANMSLDITNTDKLAVFYQDARQFGVTIRPPDINRSKADFDVENGEVLYAL 828 Query: 840 AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AI+ VG ++ A PF + DF R+D K +N+R +E+L AGA D +R Sbjct: 829 GAIRNVGLEAMHSVVAVREAGGPFKDIFDFLERIDPKAVNKRAIENLARAGAFDSIHPNR 888 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 Q++QS D + +AQ + R + ++F + + K S ++ + E Sbjct: 889 AQIIQSADLLIAHAQSMAAERASAQVSLFGTNDSSRPRLPNIPKASGPDA---LDEELSA 945 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKT-RKGSRI 1015 +GFY SGHPL + ++ + Y E++A + R+A +V +Q++ + R G + Sbjct: 946 VGFYLSGHPLQDMVDVFKRRNVTLYAEALALAQEGREAFRMAGVVRRRQERASARTGEKF 1005 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V S+P+ EYE F P Sbjct: 1006 AFVNLSDPSGEYEVMFQP 1023 >gi|99080341|ref|YP_612495.1| DNA polymerase III subunit alpha [Ruegeria sp. TM1040] gi|99036621|gb|ABF63233.1| DNA polymerase III alpha subunit [Ruegeria sp. TM1040] Length = 1166 Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust. Identities = 509/1054 (48%), Positives = 699/1054 (66%), Gaps = 49/1054 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ H+ YSLLEGA+ L + D A+Q PAIAITDTN++F+ALEFS AGIQ Sbjct: 5 PRFIHLRTHTEYSLLEGAVRLKKLPDLCKANQMPAIAITDTNSMFAALEFSVTLSGAGIQ 64 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQ+D+ + ++ G+ P FP +VLL GY+ L+ L S +Y+ D G Q Sbjct: 65 PIIGCQVDL----TFEKSDPGEKPKFPA--PVVLLAQDETGYEHLMRLSSCLYV-DNGGQ 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 ++ L L E GLI LTGG GPI + AE + K +F DRLYV LQ Sbjct: 118 LPQVSLEEL-EANAGGLICLTGGPEGPIGKLLQQGQRPAAETLMQRLKGMFPDRLYVELQ 176 Query: 188 RHRGYDRYRESQV------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 RH G D E++ V++AY +LPLVATN+ F E YEAHD L+ +A V Sbjct: 177 RHPGEDGQPEAETLTERGHVEMAYAMDLPLVATNDVYFPKTEMYEAHDALICIAEGAYVD 236 Query: 242 QKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 Q + R R+T HY K++ EM+++F+DLPEA+ENTVEIA+RC+F+ PILP+F + E Sbjct: 237 QAEPRRRLTAQHYFKSQEEMIALFADLPEAIENTVEIAQRCAFMAYRRDPILPKFADDEV 296 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D ELR +A GL+ RLA I + Y++RLDFEL +I M F GYFLIV Sbjct: 297 D--------ELRRQANEGLQQRLA--VIPHAVPVEKYQERLDFELGIIESMGFPGYFLIV 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI+W K+ IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDI Sbjct: 347 ADFIKWGKEQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDI 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMP+ QVDRL K+IP Sbjct: 407 DFCMDRREEVIKYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPFGQVDRLSKMIP 466 Query: 481 NDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + PVS++ A+ D+ R E +P VDRLL Q++EGL R+ASTHAAG+VIGDRPL Sbjct: 467 VEGVKPVSIEKALQDEPRLAEEARNEPVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPL 526 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-------- 591 LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++ + + Sbjct: 527 DALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAMKLIFKSGRDLHIG 586 Query: 592 ----------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 G + ++LIP DD TY+L + T+ +FQ+ES+GM AL+ M+P CIE Sbjct: 587 ADGTELYEPAEGAENQINLIPLDDEVTYNLYSRAKTVAVFQVESTGMMDALKRMKPTCIE 646 Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 DI+ALV+LYRPGP++NI VY KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQIAQ+ Sbjct: 647 DIVALVALYRPGPMENIPVYCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQIAQV 706 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 ++GYSL AD+LRRAMGKKIKE MD ++ +F GA++NG+ K A +F+LL KFA+YGF Sbjct: 707 MAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFANYGF 766 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPS 820 NKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ EK+ + ++ ++ + + P Sbjct: 767 NKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAVYFEEVKKGLQLPYVAPD 826 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 +N F V D + Y+L A+K VG I+ A DKPF +L DF RVD K++ +R Sbjct: 827 INRSLATFDVVDGELVYALGALKNVGVEAMNMIVTARGDKPFVNLYDFARRVDLKRVGKR 886 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 LE L AGA D +R ++ +SL+ + +Y+ +++ + + ++F E G + + Sbjct: 887 PLEMLARAGAFDVLDPNRRRVFESLEGLVQYSAAIQEQKNSNQVSLFG-EAGDDLPEPRM 945 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI-RLA 998 + R E + +GFY +GHPLD Y P L++ + +E +A RG + ++A Sbjct: 946 AGVPDWLPAERLSEEFKAIGFYLTGHPLDDYMPALKRKDVMTLDEVMAKAERGPFMAKMA 1005 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V +Q++K+ +G+R + S+ YE F Sbjct: 1006 GVVAGRQERKSARGNRFAFAQLSDTTGAYEVTIF 1039 >gi|126463991|ref|YP_001045104.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17029] gi|126105802|gb|ABN78332.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC 17029] Length = 1163 Score = 999 bits (2583), Expect = 0.0, Method: Compositional matrix adjust. Identities = 521/1062 (49%), Positives = 685/1062 (64%), Gaps = 56/1062 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+VH+ YSLLEGA+ + ++ A PA+A+TDTN +F+ALEFS A Sbjct: 1 MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GCQ+ + + G+ P P P +VLL T GY L++L S +YL + Sbjct: 61 AGIQPIVGCQVSVAYE----TAALGERPKPPAP-VVLLAQTEAGYGNLMKLSSCLYLGKE 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G ++ LS L+ G EGLI LTGG GP+ R AE L ++ RLYV Sbjct: 116 GALP-QVTLSELERHG-EGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173 Query: 185 NLQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH G +R E V+LAY LPLVATN+ F E YEAHD L+ +A Sbjct: 174 ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233 Query: 238 TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V Q R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F PILPRF Sbjct: 234 AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKRPPILPRFA 293 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + E + ELR +A GL RLA I +DY RL FEL +I +M F GY Sbjct: 294 DDEVE--------ELRRQAKEGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 344 FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL Sbjct: 404 DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463 Query: 477 KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + PVS+Q A+AD+ R REA + V RLL+ ++EGL R+ASTHAAG+VIG Sbjct: 464 KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------ 589 DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D + Sbjct: 524 DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583 Query: 590 ------------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 G + D+ IP +D TY L T+ +FQ+ESSGM AL M+P Sbjct: 584 LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI VY K+G + S+HP IDP+LKETQG+I+YQEQVMQ Sbjct: 644 TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756 IAQ++ GY+L AD+LRRAMGKKI EEM K++ +FI GA K +GI A +F+LL KF Sbjct: 704 IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M ++ +K+ + ++ + I+ Sbjct: 764 ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 + P VN F V D + Y+L A+K VG R I+EA D+PF +L D RV+ K+ Sbjct: 824 VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE L AGA D +R ++ ++LD + Y+ + + R + ++F E G Sbjct: 884 IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEARNSSQVSLFG-EAGADIP 942 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----R 991 + L R E + +GFY SGHPLD Y L++ + ++A + R Sbjct: 943 EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVT----TLAALTDLAQR 998 Query: 992 GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + +LA V S+Q+KK+ KG+R +V S+P YE F Sbjct: 999 GPMVAKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040 >gi|259417587|ref|ZP_05741506.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B] gi|259346493|gb|EEW58307.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B] Length = 1166 Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/1058 (47%), Positives = 702/1058 (66%), Gaps = 49/1058 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP F+HL+ H+ YSLLEGA+ L + D +++Q PAIA+TDTN++F+ALEFS Sbjct: 1 MTASPRFIHLRTHTEYSLLEGAVRLKKLPDLCSSNQMPAIAVTDTNSMFAALEFSVTLSG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGIQPIIGCQ+D+ + ++ G+ P FP +VLL GY+ L+ L S +Y+ + Sbjct: 61 AGIQPIIGCQVDL----TFEKSDPGEKPKFPA--PVVLLAQNEAGYEHLMRLSSCLYV-N 113 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G Q ++ L L E + GLI LTGG GPI + AE + K++F DRLY Sbjct: 114 NGGQLPQVSLEEL-EANSAGLICLTGGPEGPIGKLLQQGQRPAAEALMQRLKEMFPDRLY 172 Query: 184 VNLQRHRGYDRYRESQV------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 V LQRH G D E++ V++AY +LPLVATN+ F E YEAHD L+ +A Sbjct: 173 VELQRHPGEDGQPEAETLTERGHVEMAYAMDLPLVATNDVYFPKTEMYEAHDALICIAEG 232 Query: 238 TVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V Q + R R+T HY K++ EM+++F+DLPEA+ENTVEIA+RC+F+ PILP+F Sbjct: 233 AYVDQAEPRRRLTAQHYFKSQEEMIALFADLPEAIENTVEIAQRCAFMAYRRDPILPKFA 292 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + E D ELR +A GL+ RLA I + Y++RLDFEL +I M F GY Sbjct: 293 DDEVD--------ELRRQANEGLQQRLA--VIPHAVPVEKYQERLDFELGIIESMGFPGY 342 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+W K+ IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMP Sbjct: 343 FLIVADFIKWGKEQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMP 402 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMP+ QVDRL Sbjct: 403 DFDIDFCMDRREEVIKYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPFGQVDRLS 462 Query: 477 KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + PVS++ A+ D+ R E +P VDRLL Q++EGL R+ASTHAAG+VIG Sbjct: 463 KMIPVEGVKPVSIEKALQDEPRLAEEARNEPVVDRLLTYGQQVEGLLRNASTHAAGVVIG 522 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---- 591 DRPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++ + + Sbjct: 523 DRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAMKLIFKSGRD 582 Query: 592 --------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 G + ++LIP DD TY+L + T+ +FQ+ES+GM AL+ M+P Sbjct: 583 LHIGADGTELYEPAEGAENQINLIPLDDEVTYNLYSRAKTVAVFQVESTGMMDALKRMKP 642 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI VY KNG KI S+HPLID +L+ETQG+I+YQEQVMQ Sbjct: 643 TCIEDIVALVALYRPGPMENIPVYCEVKNGLRKITSVHPLIDHILEETQGIIVYQEQVMQ 702 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ+++GYSL AD+LRRAMGKKIKE MD ++ +F GA++NG+ K A +F+LL KFA Sbjct: 703 IAQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFA 762 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816 +YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ EK+ + ++ ++ + Sbjct: 763 NYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAIYFEEVKKGLQLPY 822 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 P +N F V D + Y+L A+K VG I+ A D+PF +L DF RVD K+ Sbjct: 823 AAPDINRSLATFDVVDGELIYALGALKNVGVDAMNLIVTARGDQPFVTLYDFARRVDLKR 882 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE L AGA D +R ++ +SL+ + +Y+ +++ + + ++F E G Sbjct: 883 VGKRPLEMLARAGAFDVLDSNRRRVFESLEGLVQYSAAIQEQKNSNQVSLFG-EAGDDLP 941 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI 995 + + + R E + +GFY +GHPLD Y P L++ + +E +A RG + Sbjct: 942 EPRMAGVPDWLPAERLSEEFKAVGFYLTGHPLDDYMPALKRKDVMTLDEVMAKAERGPFM 1001 Query: 996 -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R + S+ YE F Sbjct: 1002 AKMAGVVAGRQERKSARGNRFAFAQLSDTTGAYEVTIF 1039 >gi|260576275|ref|ZP_05844267.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2] gi|259021543|gb|EEW24847.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2] Length = 1144 Score = 998 bits (2581), Expect = 0.0, Method: Compositional matrix adjust. Identities = 514/1041 (49%), Positives = 684/1041 (65%), Gaps = 38/1041 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP F+HL+VH+ +SLLEGA+ + ++ A PA+AITDTNN+F+ALEFS A +AG+ Sbjct: 3 SPRFIHLRVHTEHSLLEGAVPVQKLIGLCVAQSMPAVAITDTNNMFAALEFSTYAASAGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 QPIIGCQ+ + G+ P P IVLL + GY L++L + +Y+ G Q Sbjct: 63 QPIIGCQVSLAHDP----AGPGERPRAAAP-IVLLAQSEAGYLNLMKLNTCLYIGKAG-Q 116 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 ++ ++ L GLI LTGG GP+ R A+ L ++ RLY+ LQ Sbjct: 117 LPQLTVAELAA-HARGLICLTGGPDGPLGRFLQAGQRPKAQALLEKLAAIYPGRLYIELQ 175 Query: 188 RHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 RH G +R E +V++AY LPLVATN+ F YEAHD L+ +A V Sbjct: 176 RHPGAGEQLPEAERASERGLVEMAYAMGLPLVATNDVYFPKAAMYEAHDALLCIAEGAYV 235 Query: 241 SQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 Q+ R R+TP HY K +EM ++F+DLPEALEN+VEIARRC+F + PILP+F + E Sbjct: 236 DQQGPRRRLTPQHYFKTEAEMATLFADLPEALENSVEIARRCAFKVAKRDPILPKFADDE 295 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ELR +A GL RLA I +Y RL FEL +I +MKF GYFLI Sbjct: 296 VE--------ELRRQAGEGLAARLA--IIPHAVPVAEYEARLAFELGIIEKMKFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI+WAK IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPDFD Sbjct: 346 VADFIKWAKGQGIPVGPGRGSGAGSLVAYALTITDLDPLRYKLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC DRR EVI YVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+I Sbjct: 406 IDFCMDRRQEVIEYVQQKYGRDKVGQIITFGALLSKAAIRDVGRVLQMPYGQVDRLSKMI 465 Query: 480 PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P + PVS+ +A+AD+ R REA + V RLL+ Q++EGL R+ASTHAAG+VIGDRP Sbjct: 466 PVEGVKPVSITKALADEPRLREAA-KEEVVARLLDYGQQIEGLLRNASTHAAGVVIGDRP 524 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 L +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q +L+ LAQRG+ +D+ Sbjct: 525 LDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNALELLAQRGIDIDI 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 SLIP DD +TY L + T+ +FQ+ESSGM AL M+P CIEDI+ALV+LYRPGP++NI Sbjct: 585 SLIPLDDAKTYELYASARTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGPMENI 644 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y KNG +I SIHP ID +L ETQG+I+YQEQVM+I Q+++GYSL AD+LRRAMG Sbjct: 645 PTYCEVKNGLRQIESIHPTIDHILAETQGIIVYQEQVMEIGQVMAGYSLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KKI EM K++ +FI GA+K +G+SK A +F+LL KFA+YGFNKSHAAAYAV+SYQTA Sbjct: 705 KKIAAEMAKERPKFIEGAAKTHGVSKEKAGEVFDLLEKFANYGFNKSHAAAYAVVSYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W+K ++PVEF+A M ++ +K+ + ++ + I+ + P VN F V D + Y Sbjct: 765 WLKANHPVEFMAGVMNCDIHLTDKLAVYKREVDKLGIRTVAPCVNASLASFSVRDGAVVY 824 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +L A+K VG + I EA KPF SL D RVD K++ +R LE L AGA D + Sbjct: 825 ALGALKNVGVEAMKLITEARGAKPFASLFDLARRVDLKRIGKRPLEMLARAGAFDVLDSN 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVENSSVRFEN 954 R ++ +LD + Y+ + + R + ++F + + VE R Sbjct: 885 RARVFDALDALGSYSAAIHEARNSNQVSLFGEAGADLPEPRLPFRDDWLPVE----RLSQ 940 Query: 955 EQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRK 1011 E + +GFY SGHPLD Y P+ RK + +E + + + ++A V S+Q+KK+ K Sbjct: 941 EHQAIGFYLSGHPLDDYMGPLKRKQVMTLHELHLRATENSPLIAKIAGSVASRQEKKSAK 1000 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G+R +V+ S+P YE F Sbjct: 1001 GNRFAFVSLSDPTGLYEVTVF 1021 >gi|221369558|ref|YP_002520654.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides KD131] gi|221162610|gb|ACM03581.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides KD131] Length = 1163 Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust. Identities = 520/1062 (48%), Positives = 685/1062 (64%), Gaps = 56/1062 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+VH+ YSLLEGA+ + ++ A PA+A+TDTN +F+ALEFS A Sbjct: 1 MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GCQ+ + + G+ P P P +VLL T GY L++L S +YL + Sbjct: 61 AGIQPIVGCQVSVAYE----TVALGERPKPPAP-VVLLAQTETGYGNLMKLSSCLYLGKE 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G ++ LS L+ G EGLI LTGG GP+ R AE L ++ RLYV Sbjct: 116 GALP-QVTLSELERHG-EGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173 Query: 185 NLQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH G +R E V+LAY LPLVATN+ F E YEAHD L+ +A Sbjct: 174 ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233 Query: 238 TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V Q R R+TP HY K+ +EMV++F+DLPEA+EN+VEIARRC+F PILPRF Sbjct: 234 AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENSVEIARRCAFKAAKRPPILPRFA 293 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + E + ELR +A GL RLA I +DY RL FEL +I +M F GY Sbjct: 294 DDEVE--------ELRRQAKEGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 344 FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL Sbjct: 404 DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463 Query: 477 KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + PVS+Q A+AD+ R REA + V RLL+ ++EGL R+ASTHAAG+VIG Sbjct: 464 KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------ 589 DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D + Sbjct: 524 DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583 Query: 590 ------------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 G + D+ IP +D TY L T+ +FQ+ESSGM AL M+P Sbjct: 584 LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI VY K+G + S+HP IDP+LKETQG+I+YQEQVMQ Sbjct: 644 TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756 IAQ++ GY+L AD+LRRAMGKKI EEM K++ +FI GA K +GI A +F+LL KF Sbjct: 704 IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M ++ +K+ + ++ + I+ Sbjct: 764 ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 + P VN F V D + Y+L A+K VG R I+EA D+PF +L D RV+ K+ Sbjct: 824 VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE L AGA D +R ++ ++LD + Y+ + + R + ++F E G Sbjct: 884 IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEARNSSQVSLFG-EAGADIP 942 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----R 991 + L R E + +GFY SGHPLD Y L++ + ++A + R Sbjct: 943 EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVT----TLAALTDLAQR 998 Query: 992 GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + +LA V S+Q+KK+ KG+R +V S+P YE F Sbjct: 999 GPMVAKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040 >gi|163795645|ref|ZP_02189611.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199] gi|159179244|gb|EDP63777.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199] Length = 1162 Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/1043 (49%), Positives = 692/1043 (66%), Gaps = 26/1043 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSL EGA+ ++ ++ PA+++TD+ NLF ALEFS A G+QPI Sbjct: 6 FIHLRVHSVYSLAEGAIHAKQLVKLAKQNRMPAVSMTDSGNLFGALEFSVTAAGEGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +G QL + VP ++LLV + GY+ L+ +VSR Y+ G++ Sbjct: 66 VGVQLAVRRPAEPDRRGLRVVAGRDVPPDQLLLLVQSEVGYRNLMGIVSRAYMETSGEEE 125 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 ++ L L E TEGLI LT G G + R AE L ++LF DRLYV LQR Sbjct: 126 PQVALDEL-EGHTEGLIALTAGLRGGMGRLLLEGRDSDAESVLQHLQRLFPDRLYVELQR 184 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D R E +++ LAY ++PLVATN F E+ +EA DVL+ +A ST + R R Sbjct: 185 HFLEDENRIEGRLIDLAYARKIPLVATNEVFFADEDMHEAQDVLLCIAGSTTIGNPKRRR 244 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +TP H K+ EM +F+DLPEA++NTV +ARRC+++ + PILPRF E E + E Sbjct: 245 LTPHHRFKSSQEMRELFADLPEAVDNTVVVARRCAYMPRKLDPILPRF-ETEGG---RSE 300 Query: 308 ENELRNKAVAGLEVRLAQGAIAK----GYHAQ---DYRQRLDFELNVIARMKFSGYFLIV 360 ELR +A AGL RL ++ HA+ Y RL EL VI +M F GYFLIV Sbjct: 301 AEELRAQAEAGLRARLDAHVLSAETPDDKHAEITRPYWDRLAMELGVIEQMGFPGYFLIV 360 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+WAK NIPVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFDI Sbjct: 361 SDFIKWAKAQNIPVGPGRGSGAGSLVAYSLLITDLDPLRWGLLFERFLNPERVSMPDFDI 420 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQDRRDEVIRYVQ+KYG +RVAQIITFG LQA+AALRDVGR L+MPY QVDR+CKL+P Sbjct: 421 DFCQDRRDEVIRYVQDKYGRDRVAQIITFGKLQARAALRDVGRVLEMPYGQVDRICKLVP 480 Query: 481 NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 N+PA+PV+L QA+ + R R AD +V L+ I+ +LEG+YR++STHAAG+VIGDRPL Sbjct: 481 NNPANPVTLAQAVTTEEELRRQRNADENVANLIRIALQLEGMYRNSSTHAAGVVIGDRPL 540 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 S+LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+LQ+++D L + G+ +DL+ Sbjct: 541 SELVPLYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLQRAVDLLKEGGIALDLA 600 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D TY +L + G+FQLESSGMR L ++PD EDIIALV+LYRPGP+ NI Sbjct: 601 KIPLEDEATYTMLARGESTGVFQLESSGMRDVLRRLRPDRFEDIIALVALYRPGPMANIP 660 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y K+G E+ +HP ++P+L ET G++IYQEQV Q AQLLSGY+L AD+LRRAMGK Sbjct: 661 KYIACKHGDEQPDYMHPKLEPVLNETFGIMIYQEQVQQAAQLLSGYTLGGADLLRRAMGK 720 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KIKEEMD Q+ERF+SGA NG+ + A IF+ +A FA YGFNKSHAAAYA+++YQTA++ Sbjct: 721 KIKEEMDAQRERFVSGAVDNGVDQGQASGIFDQIAAFAGYGFNKSHAAAYALVAYQTAYL 780 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNR 834 K ++PVEFLAASMT +M N +K+ F Q+ ++ I ++PP +N DF V G Sbjct: 781 KANHPVEFLAASMTYDMGNTDKLNTFRQELQKLRIPLLPPDINRSRRDFAVERMPDGTMA 840 Query: 835 IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+LAA+K VG ++ A AD+ F SL DF R D +++N+R+LE+LV AGA D Sbjct: 841 IRYALAAVKNVGGAAMDALVSARDADRAFKSLGDFADRADPQQVNKRLLENLVKAGAFDG 900 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R +L +SL+ + ++ R + N+FA + G ++ L+ R + Sbjct: 901 LHPNRAELFESLETVVRHVSAAASERGSSQVNLFAVDGGREPTRLRLKDRPDWPPMERLK 960 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGI----KGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 E LGFY S HPLD Y L ++ + + + E+ A + LA +VV KQ + + Sbjct: 961 EEFDALGFYLSAHPLDAYAESLGRLSVVPSDRAFAETRAKGGSTRLTLAGIVVGKQIRTS 1020 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 + G+R +V ++ +E F Sbjct: 1021 KSGNRFAFVQLTDRTGVFEVTLF 1043 >gi|197105245|ref|YP_002130622.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1] gi|196478665|gb|ACG78193.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1] Length = 1148 Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/1032 (48%), Positives = 695/1032 (67%), Gaps = 24/1032 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+V S+YSLLEGA+ + I D A PA+A+ D NLF ALEFS +G+QP Sbjct: 12 GFVHLRVRSAYSLLEGAIKADKIGDLAKAWGMPAVALADRANLFGALEFSVATKGSGVQP 71 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC L + + KTP +I+LL + +GY L EL S YL + Sbjct: 72 IIGCALPVSGIGDRPPERWAKTP-----TIMLLAQSEQGYLNLCELSSAAYLDVDASEEP 126 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR--LLTFKKLFGDRLYVNLQ 187 + + + E +EGLI+L+GG GP+D F + +V E R L K+ FG R YV LQ Sbjct: 127 HVPWTKVVER-SEGLILLSGGPDGPVDH--LFAAGKVKEGRAALAEMKRAFGSRFYVELQ 183 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 RH + E ++V AY ++PLVATN+ F + + ++AHD L+ +A + V Q +R Sbjct: 184 RHGLPAEAAAEGELVAFAYDEDVPLVATNDVYFKNPQMHQAHDALLCIADGSFVGQDERR 243 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 RVT +H+ K+ ++M ++F+DLPEA +NT++IARRC+F++ P+LP F D + Sbjct: 244 RVTAEHWFKSPADMRALFADLPEACDNTLDIARRCAFMVHKRDPLLPSFT-----DEGRS 298 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E EL ++A GL R+A G A + A++Y RL+ E+ VI +M F GYFLIV+DFI+W Sbjct: 299 EAEELAHQAREGLRARMAAGQ-ANAFPAEEYEARLEREIQVITQMGFPGYFLIVSDFIKW 357 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGSGAGS+ AYALTIT++DPLR+ LLFERFLNP+R+SMPDFDIDFCQ+R Sbjct: 358 AKARGIPVGPGRGSGAGSLVAYALTITNLDPLRYGLLFERFLNPERVSMPDFDIDFCQER 417 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YVQ +YG ++VAQIITFG+LQA+A LRDVGR +Q+P QVDRL K++P +PA+P Sbjct: 418 REEVINYVQQRYGRDKVAQIITFGTLQARAVLRDVGRVMQLPLGQVDRLAKMVPANPANP 477 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L QA+ + R +E D +V RLL+++ +LEGLYR+ASTHAAG+VIGDRPL+QL P+ Sbjct: 478 VTLAQALDIEPRLKEEAARDEAVARLLDVALQLEGLYRNASTHAAGVVIGDRPLTQLTPL 537 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RS+LP TQFNMKW+E AGL+KFDFLGLKTLT++ +++ L +RG VD++ +P DD Sbjct: 538 YRDPRSELPATQFNMKWVESAGLVKFDFLGLKTLTVIDRAVKHLEKRGAAVDMNALPLDD 597 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 TY L++ T+G+FQLE GMR L ++P IED+ A+VSLYRPGP+DNI + + K Sbjct: 598 GPTYELMSNAQTIGVFQLEGQGMRDTLRQLRPSSIEDVTAIVSLYRPGPMDNIPAFVDCK 657 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G++ I ++HPL++ +LKET G+I+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KEEM Sbjct: 658 FGRKPIDTLHPLLEGVLKETYGIIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEEM 717 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 + Q+ RF+SGA G+ + IF+L+ KFA YGFNKSHAAAYAV+SYQTAW+K + PV Sbjct: 718 EAQRARFVSGAEAKGVPAAQSGAIFDLVDKFAGYGFNKSHAAAYAVVSYQTAWLKANAPV 777 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF AASM+L++ N +K+ F QDA++F ++I PP VN DF+V + + Y+L AI+ V Sbjct: 778 EFFAASMSLDIANTDKLSVFYQDAKRFGVKIRPPCVNRSGADFEVENGEVLYALGAIRNV 837 Query: 846 GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G H+++ + PF + DF R+D K++N+R E+L AGA D +R +LL S Sbjct: 838 GLQAMEHVVQVRREGGPFRDIFDFVERIDPKQVNKRTFETLARAGAFDAIHPNRAELLAS 897 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 D + + Q + +R ++F + G ++T + + R + E +GFY Sbjct: 898 ADTLVGHGQALAADRAEGKVSLFGDDLSGGHRPRLT--RAEPWTPTERLDEELAAVGFYL 955 Query: 964 SGHPLDVYKPILRKMGIKGYEESVA-TIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 SGHPLD LR+ +++A + G +R+A ++ KQ++ +R G + +VTFS Sbjct: 956 SGHPLDDMVEALRRKRTDLLTDAIARAVAGAEALRMAGVIRRKQERPSRTGEKFAFVTFS 1015 Query: 1022 EPAKEYEANFFP 1033 +P EYE F P Sbjct: 1016 DPTGEYEVLFPP 1027 >gi|126728427|ref|ZP_01744243.1| DNA polymerase III subunit alpha [Sagittula stellata E-37] gi|126711392|gb|EBA10442.1| DNA polymerase III subunit alpha [Sagittula stellata E-37] Length = 1166 Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust. Identities = 515/1054 (48%), Positives = 686/1054 (65%), Gaps = 48/1054 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ H+ YSLLEGAL L + A PA+A+TDTNNLF+ALEFS A AG+Q Sbjct: 4 PRFIHLRTHTEYSLLEGALRLKKLPGLCADMGMPAVAVTDTNNLFAALEFSVGASGAGVQ 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGCQ+D+ + G+ P P +VLL T GY+ L++L S +YL + + Sbjct: 64 PIIGCQIDLRYFEQ----APGERIKPPAP-VVLLAQTERGYEHLMKLNSCLYL-RRDNEL 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + L L E +E +I L+GG GP+ R NS A+ + +F DRLYV LQR Sbjct: 118 AHVTLDEL-EAHSEDVICLSGGPDGPVGRLLRTNSRAAAQTLMTRLHAIFEDRLYVELQR 176 Query: 189 HRGYD-------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 H G D E V++AY LPLVATN+ F YEAHD ++ +A V Sbjct: 177 HPGEDGTPPEAEHLTERGFVEMAYEMGLPLVATNDVYFPKSSMYEAHDAMICIAEGAYVD 236 Query: 242 QKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 Q++ R R+TP HYLK EM +F+DLPEALENTVEIA+RC+F+ PILPRF + E Sbjct: 237 QQEPRRRLTPQHYLKTPQEMAVLFADLPEALENTVEIAKRCAFMAYRRDPILPRFADDEV 296 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 ELR A GL+ RLA I +DY++RLDFEL +I M F GYFLIV Sbjct: 297 --------TELRRMANEGLQARLA--VIPHAVSVEDYQKRLDFELGIIEGMGFPGYFLIV 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFIQWAK +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDI Sbjct: 347 ADFIQWAKDQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDI 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC DRR+EVIRYVQ+KYGH+RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP Sbjct: 407 DFCMDRREEVIRYVQDKYGHDRVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKMIP 466 Query: 481 NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + PVS+ QA+ D+ R E + VDRLL+ ++EGL R A THAAG+VI DRP Sbjct: 467 VEGVKPVSIEQALRDEPRLAEEAKNEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIADRPT 526 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----VK 595 +LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G V Sbjct: 527 DELVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRPLHVA 586 Query: 596 VD--------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 D ++LIP DD TY L + T+ +FQ+ESSGM AL+ M+P CIE Sbjct: 587 ADGTQLYEPPEGAENQINLIPLDDKVTYKLYASAKTVAVFQVESSGMMDALKRMKPTCIE 646 Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 DI+ALV+LYRPGP++NI VY KNG +I S+HP ID +L ETQG+I+YQEQVMQIAQ+ Sbjct: 647 DIVALVALYRPGPMENIPVYCEVKNGLREITSVHPSIDHILAETQGIIVYQEQVMQIAQV 706 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 ++GYSL AD+LRRAMGKKIKE MD ++ +F GA+KNG+ K A +F+LL KFA+YGF Sbjct: 707 MAGYSLGGADLLRRAMGKKIKEAMDAERPKFEQGAAKNGVEKKKATEVFDLLEKFANYGF 766 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPS 820 NKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R+ + +PP Sbjct: 767 NKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPWVPPC 826 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 VN F V + ++ Y+L A+K VG + ++E + F ++ DF RVD KK+ +R Sbjct: 827 VNRSLATFDVVEGQLVYALGALKNVGLEAMKLVVEGRDGRAFSTVFDFARRVDLKKIGKR 886 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 LE + AG D +R ++ SLD + Y+ + + + + ++F E G + L Sbjct: 887 PLEMMARAGCFDVLDPNRRRIFDSLDALVAYSAAIHEQKGSAQVSLFG-EAGDDLPEPRL 945 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI-RLA 998 S + R E + +GFY SGHPLD Y P L++ + +E +A RG + +LA Sbjct: 946 SPVSDWLPAERLAEEFKAVGFYLSGHPLDDYMPALKRQDVVTLDEVMAKAERGPLVAKLA 1005 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V +Q++K+ +G+R + S+P YE F Sbjct: 1006 GVVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1039 >gi|254419705|ref|ZP_05033429.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas sp. BAL3] gi|196185882|gb|EDX80858.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas sp. BAL3] Length = 1153 Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust. Identities = 510/1038 (49%), Positives = 694/1038 (66%), Gaps = 27/1038 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQ-QPAIAITDTNNLFSALEFSQKACAAG 66 S FVHL+V S+YSLLEGA+ L K+AAD PA+AI D NLF ALEFSQ AG Sbjct: 7 SQGFVHLRVRSAYSLLEGAIKAGK-LGKLAADAGMPAVAIADRTNLFGALEFSQYTRDAG 65 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +QPII C L + + KTP ++VLLV G++ L L S YL D G+ Sbjct: 66 VQPIIACALPVFGIGGHQAVRWAKTP-----TVVLLVQNEAGWRNLCALSSSAYL-DAGE 119 Query: 127 QSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + ++W Q + +EGLI+L+GG GP+D F + L T K FGDR YV Sbjct: 120 MA-EPGVAWDQVVARSEGLILLSGGPDGPVDPLFAQGKTNEGAAALATMKSAFGDRFYVE 178 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQRH D R E +V+ AY HE PLVATN+ + ++HD L+ +A Q+D Sbjct: 179 LQRHGLEDEKRAEPGLVEWAYAHETPLVATNDVYYAKAAQAKSHDALLCIADGAFTGQED 238 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R+T +H+ K+ M +F+DLPEA +NT++IARRC+F++ HAPILPRF Sbjct: 239 RRRITGEHWFKSAEAMRDLFADLPEACDNTIDIARRCAFLVNTHAPILPRF----DTGAG 294 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E +EL ++A GL+VRL Q I +Y RL++E+ +I +M F GYFLIV+DFI Sbjct: 295 RSEADELAHQAREGLKVRLGQ--ITPAVPEAEYWSRLEWEVGIIQQMGFPGYFLIVSDFI 352 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK++ IPVGPGRGSGAGS+ A++LTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 353 KWAKEHGIPVGPGRGSGAGSLVAWSLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQ 412 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EVI YVQ++YG +RVAQIITFG+LQA+A LRDVGR LQMP QVDRLCK++PN+PA Sbjct: 413 ERREEVIDYVQDRYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLCKMVPNNPA 472 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +PV+L QAI + R +EAR A+P+V LLE + +LEGLYR+ASTHAAGIVIGDRPL +LV Sbjct: 473 NPVTLAQAIDLEPRLKEARDAEPAVRTLLETALELEGLYRNASTHAAGIVIGDRPLVELV 532 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+Y+D RS +P +QFNMKW+E AGL+KFDFLGLKTLT+L ++ +L +RG D + +P Sbjct: 533 PLYQDPRSTIPASQFNMKWVEPAGLVKFDFLGLKTLTVLDRARGYLERRGAAQDWNGLPL 592 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY L+ + T+G+FQLES GMR L M+ IE+I AL+SLYRPGP++ I Y + Sbjct: 593 DDARTYELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMEMIDTYID 652 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK G+ ++ +HP + +L ET GVIIYQEQVM+IAQ+L+GYSL EAD+LRRAMGKK KE Sbjct: 653 RKFGRAEVDYLHPSLKEVLTETYGVIIYQEQVMKIAQILAGYSLGEADLLRRAMGKKKKE 712 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD Q+ RF+ GA + + +T + +IF+L+AKFA YGFNKSHAAAYA+IS+QT W+K ++ Sbjct: 713 EMDFQRARFVKGALEKTVPETQSGSIFDLVAKFAGYGFNKSHAAAYALISFQTGWLKANH 772 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNR--IYYSL 839 PVEF AASM+L++ N +K+ F QDA++F++ ++PP +N DF V D+R + Y+L Sbjct: 773 PVEFFAASMSLDLSNTDKLAVFYQDAKRFDVPVLPPDLNRSSADFDVAWDDSRGVVLYAL 832 Query: 840 AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AI+ VG +H++E F + DF RVD + +N+R LE L AGA D +R Sbjct: 833 GAIRNVGLEAMKHVIEVRETGGRFADIFDFLERVDPRSVNKRALEGLAKAGAFDSIHPNR 892 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 QL++ D + Y Q V R + ++F ++ + L+ R ++E Sbjct: 893 RQLVEQADVLMAYCQSVAAERASSQVSLFGGDQAHVG-RPRLKSVEPWVGPERLDHELSA 951 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKT-RKGSRI 1015 +GFY SGHPLD L++ + E++ + ++A +V KQ++ + R G + Sbjct: 952 VGFYLSGHPLDEMTSALKRKRVTFVAEAIPLAESGHEAFQMAGVVRRKQERASARTGEKF 1011 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VTFS+P E+E F P Sbjct: 1012 AFVTFSDPTGEFECLFPP 1029 >gi|315111547|ref|YP_508882.2| DNA polymerase III subunit alpha [Jannaschia sp. CCS1] Length = 1177 Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust. Identities = 518/1074 (48%), Positives = 697/1074 (64%), Gaps = 69/1074 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+P FVHL++H+ YSLLEGA+ + + +A PA+A+TDTNN+F ALEFS+ A Sbjct: 1 MTKAPKFVHLRLHTEYSLLEGAMKVKKMPGIVADAGMPAVAVTDTNNMFCALEFSEMAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D++ + + G+ P +IVLL GY+ L++L S +YL Sbjct: 61 AGVQPIIGCQIDLEYE----VIAPGEKPRAPA-AIVLLAQNRAGYENLMKLNSALYLRGD 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G S + LS L E EGLI L+GG GP+ R AE L T ++ DRLYV Sbjct: 116 GT-SPHVTLSELAE-HAEGLICLSGGPDGPVGRHLRAAQMPKAESLLKTLAAIYPDRLYV 173 Query: 185 NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G ++ E V+LAY LPLVATN+ F E YEAHD ++ VA Sbjct: 174 ELQRHPGEGGLPEAEKLTERGHVELAYALGLPLVATNDVYFPKSEIYEAHDAMLCVAQGA 233 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+TP HY K+ EM ++F+DLPEALENT+EIA+RC+F ++H PILP+F + Sbjct: 234 YVDQSEPRRRLTPQHYFKSADEMAALFADLPEALENTIEIAQRCAFRAEMHDPILPKFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ELR A GL+ RL I +DY+ RLDFEL +I M F GYF Sbjct: 294 DEV--------AELRRMANEGLKERLR--VIPHAASVEDYQARLDFELEIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQW+K IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWSKDQEIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYG +RV QIITFG+L +KAA+RDVGR LQMP+ QVDRL K Sbjct: 404 FDIDFCMDRREEVIRYVQEKYGRDRVGQIITFGALLSKAAVRDVGRVLQMPFGQVDRLSK 463 Query: 478 LIPNDPAHPVSL-QAIADDSRF-----------REARLADPSVDRLLEISQKLEGLYRHA 525 +IP + PVS+ QAI D+ RF R+ R+ +P+ RL++ ++K+EGL R+A Sbjct: 464 MIPVEGVKPVSIAQAIKDEPRFIEEMRESEQDKRDGRV-NPT-RRLMDYAEKIEGLLRNA 521 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 STHAAG+VIGDRPL +LVP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q + Sbjct: 522 STHAAGVVIGDRPLDELVPLYRDPRSDMPATQFNMKWVEPAGLVKFDFLGLKTLTVVQNA 581 Query: 586 LDFL------------------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 +D + G + ++LIP DD +Y L + T+ +FQ+ESSG Sbjct: 582 IDLIHTSGRQLHEGPDGTTLYEPPEGTENQINLIPLDDKASYDLYASAKTVAVFQVESSG 641 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 M AL M+PDCIEDIIALV+LYRPGP++NI + KNG + +HP +D +L ETQG Sbjct: 642 MMDALRRMKPDCIEDIIALVALYRPGPMENIPKFCEVKNGLSERERLHPTVDHLLDETQG 701 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+E MD ++ +F++GA +NG+ + A+ Sbjct: 702 IIVYQEQVMQIAQEMAGYSLGGADMLRRAMGKKIQEAMDAERPKFLAGAKENGVDEAKAL 761 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 + LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M ++ +K+ + Q Sbjct: 762 ETWALLDKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKQ 821 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA----SADKPFD 863 + + I+ + P VN F V D ++ Y+L A+K VG + I+E KP+ Sbjct: 822 EVDRMGIETLAPCVNRSAATFTVEDGKVLYALGALKNVGVEAMKMIVEGRQTDQGVKPYA 881 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 +L D RVD K++ +R LE LV AGA D +R +L SLD + Y+ V ++ Sbjct: 882 TLFDLARRVDLKRVGKRSLEMLVRAGAFDELDRNRRHVLDSLDGLTAYSAAVHDQASSNQ 941 Query: 924 ENIFAHEKGTFSDKITLEKFSVENSSV---RFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 ++F G D + + S + R E + +GFYFSGHPLD Y+P L++ G+ Sbjct: 942 VSLF----GDAGDDLPEPRLSSAPDWLPNERLAAEHQAVGFYFSGHPLDDYQPALKRRGV 997 Query: 981 KGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E A ++ ++A V KQ++K+++G+R +V+ S+P YE F Sbjct: 998 MTLAEVEARVQQGPFVAKMAGAVSVKQERKSQRGNRFAFVSLSDPTGLYEITIF 1051 >gi|77465552|ref|YP_355055.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides 2.4.1] gi|77389970|gb|ABA81154.1| DNA polymerase III alpha chain [Rhodobacter sphaeroides 2.4.1] Length = 1163 Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/1062 (48%), Positives = 682/1062 (64%), Gaps = 56/1062 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+VH+ YSLLEGA+ + ++ A PA+A+TDTN +F+ALEFS A Sbjct: 1 MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GCQ+ + + G+ P P P +VLL T GY L++L S +YL + Sbjct: 61 AGIQPIVGCQVSVAYE----TAALGERPKPPAP-VVLLAQTETGYGNLMKLSSCLYLGKE 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G ++ S L E EGLI LTGG GP+ R AE L ++ RLYV Sbjct: 116 GALP-QVTPSEL-ERHAEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173 Query: 185 NLQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH G +R E V+LAY LPLVATN+ F E YEAHD L+ +A Sbjct: 174 ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233 Query: 238 TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V Q R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F PILPRF Sbjct: 234 AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKRPPILPRFA 293 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + E + ELR +A GL RLA I +DY RL FEL +I +M F GY Sbjct: 294 DDEVE--------ELRRQAKEGLAARLA--VIPHAAPVEDYEARLSFELGIIEQMGFPGY 343 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 344 FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL Sbjct: 404 DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463 Query: 477 KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + PVS+Q A+AD+ R REA + V RLL+ ++EGL R+ASTHAAG+VIG Sbjct: 464 KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQIEGLLRNASTHAAGVVIG 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------ 589 DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D + Sbjct: 524 DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583 Query: 590 ------------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 G + D+ IP +D TY L T+ +FQ+ESSGM AL M+P Sbjct: 584 LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI VY K+G + S+HP IDP+LKETQG+I+YQEQVMQ Sbjct: 644 TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756 IAQ++ GY+L AD+LRRAMGKKI EEM K++ +FI GA K +GI A +F+LL KF Sbjct: 704 IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M ++ +K+ + ++ + I+ Sbjct: 764 ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 + P VN F V D + Y+L A+K VG R I+EA D+PF +L D RV+ K+ Sbjct: 824 VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE L AGA D +R ++ ++LD + Y+ + + + ++F E G Sbjct: 884 IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEALNSSQVSLFG-EAGADIP 942 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----R 991 + L R E + +GFY SGHPLD Y L++ + ++A + R Sbjct: 943 EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVT----TLAALTDLAQR 998 Query: 992 GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + +LA V S+Q+KK+ KG+R +V S+P YE F Sbjct: 999 GPMVAKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040 >gi|146279950|ref|YP_001170108.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17025] gi|145558191|gb|ABP72803.1| hypothetical protein Rsph17025_3949 [Rhodobacter sphaeroides ATCC 17025] Length = 1163 Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/1062 (48%), Positives = 683/1062 (64%), Gaps = 56/1062 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+VH+ YSLLEGA+ + ++ A PA+A+TDTN +F+ALEFS A Sbjct: 1 MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GCQ+ + + + + K P P +VLL GY L++L S +YL + Sbjct: 61 AGIQPIVGCQVSV-AYETAALGERAKPPAP----VVLLAQNEAGYGNLMKLSSCLYLGKE 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G ++ L L+ + GLI LTGG GP+ R AE L ++ RLYV Sbjct: 116 GALP-QVTLEELERHAS-GLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173 Query: 185 NLQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH G +R E V+LAY LPLVATN+ F E YEAHD L+ +A Sbjct: 174 ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233 Query: 238 TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V Q R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F PILPRF Sbjct: 234 AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKRPPILPRFA 293 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + E + ELR +A GL RLA I +DY RL FEL +I +M F GY Sbjct: 294 DDEVE--------ELRRQAKGGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 344 FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL Sbjct: 404 DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463 Query: 477 KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + PVS+Q A+AD+ R REA + V RLL+ ++EGL R+ASTHAAG+VIG Sbjct: 464 KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------ 589 DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D + Sbjct: 524 DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583 Query: 590 ------------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 G + D+ IP +D Y L T+ +FQ+ESSGM AL M+P Sbjct: 584 LHMAADGRVLYDPPPGAENDIGHIPLEDKAAYELYAQAKTVAVFQVESSGMMDALRRMKP 643 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI VY K+G ++ S+HP IDP+LKETQG+I+YQEQVMQ Sbjct: 644 TCIEDIVALVALYRPGPMENIPVYCEVKHGLRELESLHPTIDPILKETQGIIVYQEQVMQ 703 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756 IAQ+++GY+L AD+LRRAMGKKI EEM K++ +FI GA K +GI A +F+LL KF Sbjct: 704 IAQVMAGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDTKKAGEVFDLLEKF 763 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M ++ +K+ + ++ + I+ Sbjct: 764 ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 + P VN F V D + Y+L A+K VG R I+EA D+PF +L D RV+ KK Sbjct: 824 VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKK 883 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE L AGA D +R ++ ++LD + Y+ + + R + ++F E G Sbjct: 884 IGKRPLEMLARAGAFDALDRNRARVFEALDALVSYSAAIHEARNSSQVSLFG-EAGADIP 942 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----R 991 + L R E + +GFY SGHPLD Y L++ + ++A + R Sbjct: 943 EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVT----TLAALTDLAQR 998 Query: 992 GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + +LA V S+Q+KK+ KG+R +V S+P YE F Sbjct: 999 GPMVAKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040 >gi|315111546|ref|YP_421932.2| DNA polymerase III subunit alpha [Magnetospirillum magneticum AMB-1] Length = 1154 Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/1041 (48%), Positives = 694/1041 (66%), Gaps = 31/1041 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VH++YSL EGA+ L ++ PA+ ITDT NLF ALEFS AGIQPI Sbjct: 7 FVHLRVHTAYSLAEGAIKLKQLIKLCEKAAMPAVGITDTANLFGALEFSTSCSDAGIQPI 66 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G Q+ I +D + G+ P P ++VLL GY L++LVS+ +L ++ + Sbjct: 67 VGAQIAIRREDG-GPSKDGRKPEPD--TLVLLCQNEAGYLNLLKLVSKAFLETDAGETPQ 123 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L L E ++GLI+LTGG +GP+ R ++ AE L + F R YV L RH Sbjct: 124 VTLHDL-ETRSDGLIVLTGGPAGPVGRLLADGQTEKAEIVLARLARAFAGRCYVELMRHN 182 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 R E +V LAY H+LPLVATN + F YEAHD L+ +A +SQ +R R+T Sbjct: 183 LEVEDRIEPLLVSLAYKHDLPLVATNEAFFADRGMYEAHDALVCIAEGAYISQDERRRLT 242 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P+HY K+ EM ++F+DLPEA +NT+ IARRC+F + PILP + D + + E Sbjct: 243 PEHYFKSPEEMRALFADLPEACDNTLVIARRCAFGVAKRKPILPPY---RMDGLTEAEV- 298 Query: 310 ELRNKAVAGLEVRLAQGAIAKG-------YHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 LR K GLE RL + +G + A+ YR+R++FELNVI M F GYFLIV+D Sbjct: 299 -LRKKTWEGLEARLEKHVFKEGMTDDEKEHAAKPYRERIEFELNVIEEMGFPGYFLIVSD 357 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K IPVGPGRGSGAGS A+ALTITD+DPLR+ LLFERFLNP+R+SMPDFDIDF Sbjct: 358 FIQWSKAQEIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSMPDFDIDF 417 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+E IRYVQ KYG+ +VAQIITFG LQA+A LRDVGR LQMPY QVDR+CKL+PN+ Sbjct: 418 CQDRREETIRYVQGKYGYSQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRICKLVPNN 477 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+P++L QA+ + +E + D +V L++++ KLEGLYRHASTHAAG+VIGDRPL + Sbjct: 478 PANPMTLEQALESEPLLKEQKERDEAVSHLIDLAMKLEGLYRHASTHAAGVVIGDRPLDE 537 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT++ ++ + + +G+ +DLS Sbjct: 538 LVPLYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVMVTAVKHVKKTKGIDIDLSA 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD ++Y LL+ G+FQLESSGMR L M P+ +ED+IA+V+LYRPGP+D I Sbjct: 598 IPLDDAKSYELLSRGDAAGVFQLESSGMRDVLRKMGPNRLEDLIAVVALYRPGPMDQIPR 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y K+GKE+ +HPL++P+LKET G+++YQEQVMQIAQ+LSGYSL AD+LRRAMGKK Sbjct: 658 YIACKHGKEEPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLLRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 +EEMD+Q+ +F+ GA+ + A IF+ +AKFA+YGFNKSHAAAYA+I+YQTAW+K Sbjct: 718 DREEMDRQRAKFVEGATARAVDGGQASMIFDKVAKFAEYGFNKSHAAAYALIAYQTAWLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835 +YP EF+AA+MT EM N +K+ F Q+ + I+++PP +N F V G + + Sbjct: 778 ANYPAEFMAATMTYEMSNTDKLNSFRQELDRLGIKLLPPDINASQPTFSVEVLPDGGSAV 837 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y+LAA+K VG + ++ E F + DF +R+DSK LNRR LE++V AG D Sbjct: 838 RYALAALKNVGEAAMKSLVDERERGGRFKDVGDFAARMDSKVLNRRQLENMVKAGVFDSL 897 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R +L ++ D + +YA ++R + ++ G+ + + LE + + Sbjct: 898 DKNRGRLFKNADTLCRYAASAAEDRDSSQMSLLG---GSNAPTLKLESGPDWSPHEKLNQ 954 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKTRK 1011 E +GFY S HPLD Y ++++ + E ++ +RLA ++SKQ++ + K Sbjct: 955 EFEAVGFYLSAHPLDAYAKSMKRLNVLKIAELPRHLQSGGKGRVRLAGSLLSKQERVSAK 1014 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 GSR ++ FS+ + +E F Sbjct: 1015 GSRYAFLQFSDASGMFEVTCF 1035 >gi|56695561|ref|YP_165911.1| DNA polymerase III subunit alpha [Ruegeria pomeroyi DSS-3] gi|56677298|gb|AAV93964.1| DNA polymerase III, alpha subunit [Ruegeria pomeroyi DSS-3] Length = 1187 Score = 988 bits (2553), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/1081 (47%), Positives = 702/1081 (64%), Gaps = 74/1081 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNI---LDKIAADQQPAIAITDTNNLFSALEFSQK 61 + +P F+HL++H+ YSLLEGA+ L + DK+ PA+A+TDTNNLF+ALEFS Sbjct: 1 MSSNPRFIHLRLHTEYSLLEGAVRLKKLPALCDKMG---MPAVAVTDTNNLFAALEFSVG 57 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 A AGIQPIIGCQLD+ + G+ P P P +VLL GY+ L++L S +Y+ Sbjct: 58 ASGAGIQPIIGCQLDLAYVAAMP----GERPKPPAP-LVLLAQNEAGYENLMKLNSCLYV 112 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 D+G Q ++ L L+ +G +GLI L+GG GP+ R AE + +F DR Sbjct: 113 -DKGGQLPQVTLEELEALG-DGLICLSGGPDGPVGRLLQAGQRPAAEALVDRLAAIFADR 170 Query: 182 LYVNLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 Y+ LQRH G +R E V++AY LPLVATN+ F YEAHD L+ +A Sbjct: 171 FYIELQRHPGEGGAPEAERLTERGHVEMAYAKGLPLVATNDVYFPEAGMYEAHDALICIA 230 Query: 236 HSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 V Q + R R+T HYLK+ EM ++F+DLPEA+ENTVEIARRC+F+ PILP+ Sbjct: 231 DGAYVDQAEGRRRLTAQHYLKSPQEMATLFADLPEAIENTVEIARRCAFMAYRRDPILPK 290 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F + E ELR +A GL+ RLA I A+DY++RLDFEL++I M F Sbjct: 291 FADDEV--------VELRRQANEGLQARLA--VIPHAVSAEDYQKRLDFELDIIEGMGFP 340 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+S Sbjct: 341 GYFLIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVS 400 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDR Sbjct: 401 MPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDR 460 Query: 475 LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 L K+IP + PVS++ A+ D+ R RE + VDRLL Q++EGL R+ASTHAAG+V Sbjct: 461 LSKMIPVEGVKPVSIEKALKDEPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVV 520 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 IGDRPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G Sbjct: 521 IGDRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSG 580 Query: 594 ----VKVD--------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 V D ++ IP DD TY L + T+ +FQ+ESSGM AL+ M Sbjct: 581 RPLHVAADGRQLYDPAEGAENQINAIPLDDVPTYKLYSAAKTVAVFQVESSGMMDALKRM 640 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695 +P CIEDI+ALV+LYRPGP++NI VY KNG +I S+HPLID +L+ETQG+I+YQEQV Sbjct: 641 KPTCIEDIVALVALYRPGPMENIPVYCEVKNGLREITSVHPLIDHILEETQGIIVYQEQV 700 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQIAQ+++GYSL AD+LRRAMGKKIKE MD ++ +F +GA++NG+ A +F+LL K Sbjct: 701 MQIAQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFETGAAENGVDAKKASEVFDLLEK 760 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNI 814 FA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R+ + Sbjct: 761 FANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGL 820 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA------------------ 856 +PP VN F V + Y+L A+K VG R ++E Sbjct: 821 PYVPPCVNRSQATFDVVGGELVYALGALKNVGVEAMRLVVEGRQGAHPPEPASSRDAARR 880 Query: 857 ---SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 + ++PF +L DF RVD KK+ +R LE + AGA D +R ++ S++ + Y+ Sbjct: 881 PDRAEERPFVTLFDFARRVDLKKVGKRPLEMMARAGAFDQLDPNRRRVFDSIEALMAYSG 940 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 + + +++ ++F E G + L + + R E + +GFY SGHPLD Y P Sbjct: 941 AIFEQKSSNQVSLFG-EAGDDLPEPRLAQAPDWLPAERLSEEFKAIGFYLSGHPLDDYMP 999 Query: 974 ILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 L++ G+ +E R + ++A +V +Q++K+ +G+R + S+P +E Sbjct: 1000 ALKRKGVLTLDEVTEQARSGPVLAKMAGVVAGRQERKSARGNRFAFAQMSDPTGAFEVTL 1059 Query: 1032 F 1032 F Sbjct: 1060 F 1060 >gi|288962247|ref|YP_003452542.1| DNA polymerase III subunit alpha [Azospirillum sp. B510] gi|288914513|dbj|BAI75998.1| DNA polymerase III subunit alpha [Azospirillum sp. B510] Length = 1167 Score = 987 bits (2552), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/1054 (49%), Positives = 698/1054 (66%), Gaps = 44/1054 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS+YSL EGA+ + ++ Q PA+A+TDT NLF ALEF+ A AG+QPI Sbjct: 6 FIHLRVHSAYSLSEGAIKVKELVKLCLKQQMPAVAVTDTGNLFGALEFALAASDAGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFP-----TVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 IG L I Q K P T +VLL EGY+ L LVS+ +L Sbjct: 66 IGTVLGITRVG----PAQTKPGLPGKAAATPDQLVLLCQNEEGYRNLAALVSKAFLESDP 121 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 ++ L L E + GLI LTGG +G + R +A L K+LF RLYV Sbjct: 122 LAGPQVALDAL-EGHSGGLIALTGGPAGSVGRLLHEGQKDLALDVLERLKRLFPGRLYVE 180 Query: 186 LQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G + E ++ LAY H LPLVATN+ F +E+ YEAHD L+ +A Sbjct: 181 LQRHEGGRGQFAAVENAIEPALIDLAYAHGLPLVATNDCYFATEDMYEAHDALLCIAEGA 240 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 +SQ DR R+TPDH K+ EM +F+DLPEA++NTV IARRCS++L+ PILP F Sbjct: 241 YLSQDDRRRLTPDHRFKSAEEMRRLFADLPEAVDNTVAIARRCSYLLKPIKPILPPFA-- 298 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARM 351 C+ + E++ELR ++ AGLE+RL + + Y +RL+FEL+VI +M Sbjct: 299 -CEG-GRTEDDELRAQSRAGLEMRLEKVVFTPEMTPEQREETRKTYFERLEFELDVIVKM 356 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 KF GYFLIV+DFI+WAK +IPVGPGRGSGAGSV A+ALTITD+DPLRF LLFERFLNP+ Sbjct: 357 KFPGYFLIVSDFIKWAKNEDIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPE 416 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFDIDFCQDRR+EVIRYVQ KYG++RVAQIITFG LQA+A LRDVGR LQMPY Q Sbjct: 417 RVSMPDFDIDFCQDRREEVIRYVQKKYGYDRVAQIITFGKLQARAVLRDVGRVLQMPYGQ 476 Query: 472 VDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 VD++CK++PN+PA+PV+L QA+ + R+AR +D +V L++I+ KLEGLYRHASTHAA Sbjct: 477 VDKICKMVPNNPANPVTLQQALDSEEMLRQARDSDDTVRHLVDIALKLEGLYRHASTHAA 536 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VIGDRPL +LVP+YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++D + Sbjct: 537 GVVIGDRPLQELVPLYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKTAVDLIP 596 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + K DL+ +P DD ++Y LL+ G+FQLESSGMR L ++P+ +EDIIALVSLY Sbjct: 597 E---KPDLTTVPLDDEKSYQLLSRAEATGVFQLESSGMRDVLRRLKPNRLEDIIALVSLY 653 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+DNI Y KNG+EK +H ++ +LKET G++IYQEQVMQIAQ+LSGYSL A Sbjct: 654 RPGPMDNIPKYIRVKNGEEKADYMHDSLEGILKETFGIMIYQEQVMQIAQVLSGYSLGGA 713 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIKEEMD Q++ F GA G+ +A IF+ + KFA YGFNKSHAAAYA Sbjct: 714 DLLRRAMGKKIKEEMDNQRKIFCDGAEARGVKADLASMIFDQVMKFAGYGFNKSHAAAYA 773 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +++Y TA++K ++PVEF+AASMTL++ N +K+ F Q+ + ++++ P +N F V Sbjct: 774 LVAYHTAYLKANHPVEFMAASMTLDLGNTDKLNVFRQELARLRVKLLTPDINKSDSIFGV 833 Query: 831 -----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884 G + Y+LAA+KGVG + ++E + PF SL DF R+D K +N+R LE+ Sbjct: 834 EQLADGSKAVRYALAAVKGVGLPAMKAVVEERRRNGPFRSLFDFARRLDLKTINKRQLEN 893 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LE 941 L AGA D +R Q+ +L+ I +YAQ R + N+F G + + Sbjct: 894 LACAGAFDGLNPNRAQVHAALETIIRYAQAEAAERDSGIGNLFGGGFGGGGGGLPEPEMP 953 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYK-PILRKMGIKGYEESVATIRGNNIR--LA 998 K + ++E +GFY S HPLD Y P+ R ++ E A +G + R +A Sbjct: 954 KVKDWEPLEKLKHEFGAIGFYLSAHPLDAYSGPLGRMKVVRSAELQTAIAKGGSTRYKMA 1013 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++VSK++K + G+R +V S+ YE F Sbjct: 1014 GIIVSKKEKTAKSGNRFAFVELSDATGGYEVTLF 1047 >gi|114765486|ref|ZP_01444596.1| DNA polymerase III subunit alpha [Pelagibaca bermudensis HTCC2601] gi|114542196|gb|EAU45227.1| DNA polymerase III subunit alpha [Roseovarius sp. HTCC2601] Length = 1174 Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/1066 (47%), Positives = 692/1066 (64%), Gaps = 64/1066 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VH+ YSLLEGA+ L + A + PA+A+TDTNNLFSALEFS A AG+Q Sbjct: 4 PRFIHLRVHTEYSLLEGAIRLKKLPGLCEAMEMPAVAVTDTNNLFSALEFSVTASGAGVQ 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PI+GCQ+D L+ P P+ +VLL GY+ L++L S +YL G+ Sbjct: 64 PIVGCQVD------LRYVQPAPGERPKAPAPVVLLAQNERGYENLMKLNSCLYLRRDGEL 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + + L L+E G EG+I L+GG GP+ R N A+ L +++ DRLYV LQ Sbjct: 118 A-HVLLDELEEYG-EGVICLSGGPDGPVGRLLRENHRAAAQTLLTRLHQIYQDRLYVELQ 175 Query: 188 RHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 RH G D R E V++AY +PLVATN+ F E YEAHD ++ +A V Sbjct: 176 RHPGEDGLPEAERLTERGHVEMAYEMGIPLVATNDVYFPKENMYEAHDAMICIAEGAYVD 235 Query: 242 QKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 Q++ R R+TP HYLK EM ++F+DLPEALENTVEIA+RC+F+ PILP+F + E Sbjct: 236 QQEPRRRLTPQHYLKTPQEMATLFADLPEALENTVEIAKRCAFMAYRRDPILPKFADDEV 295 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 ELR +A GL+ RL+ I + Y++RLDFEL +I M F GYFLIV Sbjct: 296 --------VELRRQANEGLQKRLS--VIPHAVTVEKYQERLDFELGIIEGMGFPGYFLIV 345 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDI Sbjct: 346 ADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDI 405 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP Sbjct: 406 DFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKMIP 465 Query: 481 NDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + PVS++ A+ D+ R RE + VDRLL+ ++EGL R A THAAG+VI DRP Sbjct: 466 VEGVKPVSIEKALQDEPRLREEAEREEVVDRLLKYGMQVEGLLRSAGTHAAGVVIADRPT 525 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G + Sbjct: 526 DELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSGRPIHVA 585 Query: 597 ---------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++LIP DD +TY L + T+ +FQ+ES+GM AL+ M+P CIE Sbjct: 586 ADGSQLYEPAEGGENQMNLIPLDDDKTYKLYASAKTVAVFQVESTGMMDALKRMKPTCIE 645 Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 DI+ALV+LYRPGP++NI VY KNG+ +I S+HP ID +L ETQG+I+YQEQVMQIAQ Sbjct: 646 DIVALVALYRPGPMENIPVYCEVKNGQREITSVHPSIDHILAETQGIIVYQEQVMQIAQE 705 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 ++GYSL AD+LRRAMGKKIKE MD ++ +F SGA+KNG+ K A +F+LL KFA+YGF Sbjct: 706 MAGYSLGGADLLRRAMGKKIKEAMDAERPKFESGAAKNGVEKKKATEVFDLLEKFANYGF 765 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK-KFCQDARQFNIQIMPPS 820 NKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ EK+ F + + + +PP Sbjct: 766 NKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAVYFYETKKGLKLDYIPPC 825 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA---------SADKPFDSLEDFCSR 871 VN F V D ++ Y+L A+K VG R ++E S DKPF ++ DF R Sbjct: 826 VNRSQASFDVEDGKLVYALGALKNVGLDAMRLVVEGRRSVPEDPRSPDKPFVNVYDFARR 885 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 VD K++ +R LE + AG D +R ++ +SLD + Y+ + + + + ++F Sbjct: 886 VDLKRVGKRPLEMMARAGCFDQLDRNRRRIFESLDALVAYSAAIHEQKASAQVSLF---- 941 Query: 932 GTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 G D + + S + R E + +GFY SGHPLD Y P L++ + +E Sbjct: 942 GEAGDDLPEPRLSPAPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRRDVLTLDEVED 1001 Query: 989 TIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 RG ++ +V +Q++K+ KG+R + S+P+ YE F Sbjct: 1002 KARGGACIAKMGGVVAGRQERKSAKGNRFAFAQLSDPSGAYEVTIF 1047 >gi|254463266|ref|ZP_05076682.1| DNA polymerase III, alpha subunit subfamily, putative [Rhodobacterales bacterium HTCC2083] gi|206679855|gb|EDZ44342.1| DNA polymerase III, alpha subunit subfamily, putative [Rhodobacteraceae bacterium HTCC2083] Length = 1168 Score = 983 bits (2542), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/1057 (47%), Positives = 692/1057 (65%), Gaps = 47/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+P F+HL+ H+ YSLLEGAL L + D + PA+A+TDTNNLF+ALEFS A Sbjct: 3 MTKAPRFIHLRAHTEYSLLEGALRLKKLPDLCKSMDMPAVAVTDTNNLFAALEFSVGASG 62 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+DI + + K P P +VLL GY+ L++L S +Y+ + Sbjct: 63 AGVQPIIGCQVDITYL-AAQPGERAKAPAP----LVLLAQNEVGYENLMKLNSCLYIDND 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q ++ L L + GLI L+GG G I + AE + FGDRLYV Sbjct: 118 G-QLPQVSLDDLDTLNA-GLICLSGGPEGAIGKLLQGGQRPAAEALMDRLHGAFGDRLYV 175 Query: 185 NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH +R E V++AY LPLVATN+ F YEAHD L+ +A Sbjct: 176 ELQRHPENGGLPEAERLTERGFVEMAYAKSLPLVATNDVYFPKSSMYEAHDALICIADGA 235 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q+D R ++T HY K++ EMV++F+DLPEA++NT+EIA+RC+F PILP+F + Sbjct: 236 YVDQQDPRRKLTAQHYFKSQEEMVTLFADLPEAIKNTIEIAKRCAFQAYRRDPILPKFAD 295 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ELR A GL+ RLA I ++Y++RLDFEL++I M F GYF Sbjct: 296 DEV--------AELRRIANEGLQKRLA--VIPHSVTLEEYQERLDFELDIIEGMGFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK N IPVGPGRGSGAGS+ AYALT+TD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 346 LIVADFIQWAKDNGIPVGPGRGSGAGSLVAYALTVTDLDPLRYSLLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 406 FDIDFCMDRREEVIQYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 465 Query: 478 LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ A+AD+ R RE + V RLL+ Q++EGL R+ASTHAAG+VIGD Sbjct: 466 MIPVEGVKPVSIEKALADEPRLREEARNEEVVKRLLDYGQQVEGLLRNASTHAAGVVIGD 525 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + G ++ Sbjct: 526 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMEQITAGGRQL 585 Query: 597 ------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 D++ IP DD +Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 586 HIAADGTELYTPAAGTVDDINAIPLDDENSYKLYASAKTVAVFQVESSGMMDALKRMKPT 645 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG ++ S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 646 CIEDIVALVALYRPGPMENIPTYCEVKNGLKERESVHPLIDHILEETQGIIVYQEQVMQI 705 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA +NG+ A +F+LL KFA+ Sbjct: 706 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAKENGVPAKKASEVFDLLEKFAN 765 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ ++ ++ + Sbjct: 766 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVKKGLDLPWV 825 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PP VN FKV + + Y+L A+K VG + ++E DKPF ++ D RVD K++ Sbjct: 826 PPCVNRSDATFKVANGELVYALGALKNVGVEAMKLVVEGRGDKPFSTIYDLARRVDLKRV 885 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE LV +GA D +R ++ SLD + Y+Q + + + + ++F E G + Sbjct: 886 GKRPLEMLVRSGAFDQLDPNRRRVFDSLDGLVNYSQAIFEQKNSNQVSLFG-EAGADLPE 944 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-- 995 L S + R E R +GFY SGHPLD Y L++ G+ +E A + Sbjct: 945 PRLSPVSDWMPAERLNEEFRAVGFYMSGHPLDDYMAPLKRKGVMTLDEVTAKAENGALVA 1004 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +LA +V +Q++K+ +G+R + S+ + YE F Sbjct: 1005 KLAGVVAGRQERKSARGNRFAFAQLSDTSGAYEVTLF 1041 >gi|302383614|ref|YP_003819437.1| DNA polymerase III subunit alpha [Brevundimonas subvibrioides ATCC 15264] gi|302194242|gb|ADL01814.1| DNA polymerase III, alpha subunit [Brevundimonas subvibrioides ATCC 15264] Length = 1162 Score = 983 bits (2542), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/1046 (48%), Positives = 693/1046 (66%), Gaps = 31/1046 (2%) Query: 3 QYLEKSPS---FVHLQVHSSYSLLEGALSLNNILDKIAADQ-QPAIAITDTNNLFSALEF 58 Q + +P+ FVHL+V S+YSLLEGA+ + K+AAD PA+ + D NLF ALEF Sbjct: 11 QAISDTPAQTGFVHLRVRSAYSLLEGAIKAGKV-GKLAADAGMPAVGVADRVNLFGALEF 69 Query: 59 SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 S+ A + G+QP+I C L + + K VP++VL+ G++ L L S Sbjct: 70 SEAAKSVGVQPLIACALPVTGIGGKRTERWAK-----VPTVVLICQDEPGWRNLCALSSS 124 Query: 119 MYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 YL D G + + +W Q + + GLI+L+GG GP+D F N + L Sbjct: 125 AYL-DAGDEEPNV--TWDQVVAHSAGLILLSGGPDGPVDPLFVQNKPAEGARALAAMAGA 181 Query: 178 FGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 FGDR YV LQRH R + E +V+ AY H++PLVATN+ + + +HD L+ +A Sbjct: 182 FGDRFYVELQRHGRPDEAAAERGLVEWAYGHDVPLVATNDVHYARQNQARSHDALLCIAD 241 Query: 237 STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 Q+DR R+T H+ + +EM ++F+DLPEA ++T+EIARRC+F+++ H PILPRF Sbjct: 242 GAFTGQEDRRRITDQHFFRTAAEMRTLFADLPEACDSTIEIARRCAFLVKTHPPILPRFD 301 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + + E +EL ++A GL+ RL + DY RL++E+ +I +M F GY Sbjct: 302 TGDG----RTEPDELMHQAREGLKARLK--LVTPSAPEADYWTRLEWEVGIITQMGFPGY 355 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV+DFI+WAK + IPVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMP Sbjct: 356 FLIVSDFIKWAKSHGIPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMP 415 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFCQ+RR+EVI YVQ +YG +RVAQIITFG+LQA+A LRDVGR LQMP QVDRL Sbjct: 416 DFDIDFCQERREEVITYVQERYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLA 475 Query: 477 KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IPN+PA+P +L QAI + R REAR AD +V LLE + +LEGLYR+ASTHAAGIVIG Sbjct: 476 KMIPNNPANPTTLAQAIEIEPRLREARDADRAVATLLETALELEGLYRNASTHAAGIVIG 535 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 DRPL +L P+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT+L ++ +L++RG Sbjct: 536 DRPLVELTPLYQDPRSDIPATQFNMKWVEPAGLVKFDFLGLKTLTVLDRAHGYLSRRGAA 595 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 D +L+P DD +TY L+ + T+G+FQLES GMR L M+ IE+I AL+SLYRPGP+ Sbjct: 596 QDFNLLPLDDGKTYELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPM 655 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + I Y +RK G+ ++ +HP + +L ET GVIIYQEQVM+IAQ+L+GYSL EAD+LRR Sbjct: 656 EMIDTYIDRKFGRAEVDYLHPSLTEVLTETYGVIIYQEQVMKIAQILAGYSLGEADLLRR 715 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK KEEMD QK RFI GAS+ + + + +IFEL+AKFA YGFNKSHAAAYA+ISYQ Sbjct: 716 AMGKKKKEEMDFQKARFIKGASEKSVPEQQSDSIFELVAKFAGYGFNKSHAAAYALISYQ 775 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----G 831 T W+K ++PVEF AASM+L++ N +K+ F QDAR+F + + P VNT DF V G Sbjct: 776 TGWLKANHPVEFFAASMSLDLSNTDKLAVFYQDARKFGVPVRAPDVNTSSADFDVTWEEG 835 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + Y+L AI+ VG +H++E F + DF RVD + +N+R LE L AGA Sbjct: 836 TGAVLYALGAIRNVGLEAMKHVVEVRETGGRFADIFDFLERVDPRAVNKRALEGLAKAGA 895 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 D +R QL + D + Y Q V +RT+ ++F ++ S + L+ Sbjct: 896 FDSIHPNRRQLFEQADTLMAYCQSVAADRTSSQVSLFGADQAGAS-RPRLKSVEPWVGPE 954 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKK- 1008 R + E +GFY SGHPL+ + LR+ + E+V +G++ + A VV ++Q++ Sbjct: 955 RLDQELSAVGFYLSGHPLEDMEGALRRKRVTFVAEAVQRAEQGHDAFMMAGVVRRRQERA 1014 Query: 1009 -TRKGSRIGWVTFSEPAKEYEANFFP 1033 + G + +VTFS+P E+E F P Sbjct: 1015 SAKNGEKFAFVTFSDPTGEFECLFPP 1040 >gi|310816591|ref|YP_003964555.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25] gi|308755326|gb|ADO43255.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25] Length = 1163 Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust. Identities = 510/1054 (48%), Positives = 693/1054 (65%), Gaps = 48/1054 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VH+ YSLLEGA+ ++ A PA+A+TDTNNLF ALEFS+KA +GIQ Sbjct: 4 PKFIHLRVHTEYSLLEGAIHAGDLPKLAKAAGMPAVAVTDTNNLFCALEFSEKASKSGIQ 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGCQ+D+ ++ + + P P IVLL + GY L+ L S YL D+G Sbjct: 64 PIIGCQVDLTYM-KVEAGKRAEDPAP----IVLLAQSEVGYANLMALNSCAYL-DKGGAL 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 ++ + L EGLI LTGG GP+ R A L ++ +RLYV LQR Sbjct: 118 PQVTTADLAA-HAEGLICLTGGPDGPLGRMIRAGQDNAARLLLERLAAIYPNRLYVELQR 176 Query: 189 HR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 H + E ++ AY LPLVATN++ F E YEAHD L+ +A V Q Sbjct: 177 HPIEGGLPDAEAQTERPFIEWAYALNLPLVATNDAYFKDEGFYEAHDALICIAEGAYVDQ 236 Query: 243 KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++ R ++TP HY K+++EM ++F+DLPEALENTVEIA+RC+F PILPRF + E + Sbjct: 237 QEPRRKLTPQHYFKSQAEMATLFADLPEALENTVEIAKRCAFKAYKRDPILPRFADDEVE 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ELR ++ AGL+ RL A H Y RL+FE+N+I +M F GYFLIVA Sbjct: 297 --------ELRRQSKAGLQARLDVIPHAAELHV--YWDRLEFEMNIIEKMGFPGYFLIVA 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK IPVGPGRGSGAGS+ AYALTITD+DP+R+SLLFERFLNP+R+SMPDFDID Sbjct: 347 DFIKWAKDEGIPVGPGRGSGAGSLVAYALTITDLDPIRYSLLFERFLNPERVSMPDFDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRR+EVI+YVQ KYG +RVAQIITFG+L +KAA+RDVGR LQMPY QVDRL K+IP Sbjct: 407 FCMDRREEVIQYVQGKYGRDRVAQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPV 466 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + PVS+ QA+ D+ R RE +P V RLL+ +Q++EGL R+ASTHAAG+VIGDRPL Sbjct: 467 EGVKPVSIAQALKDEPRLREEADREPVVARLLDYAQQVEGLLRNASTHAAGVVIGDRPLD 526 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ--------- 591 LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++ + + Sbjct: 527 HLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVSLIRKSGRHLHEAA 586 Query: 592 ---------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 +G + D+ IP DD ++Y L + T+ +FQ+ES+GM AL+ M+P CIED Sbjct: 587 DGTVLYTPPKGAEDDIGAIPLDDAKSYQLYSDAKTVAVFQVESTGMMDALKRMKPTCIED 646 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 I+ALV+LYRPGP++NI Y KNG+ +I SIHP ID +L ETQG+I+YQEQVMQIAQ++ Sbjct: 647 IVALVALYRPGPMENIPTYCEVKNGQREITSIHPTIDFILAETQGIIVYQEQVMQIAQVM 706 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGF 761 +GYSL AD+LRRAMGKKI EEM K++ +F +GA + + I + A +F+LL KFA+YGF Sbjct: 707 AGYSLGGADLLRRAMGKKIAEEMAKERPKFTTGAKETHNIDEKKAGEVFDLLEKFANYGF 766 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPS 820 NKSHAAAYAV+SYQTAW+K ++ VEF+A M ++ +K+ + Q+ R+ + +PP Sbjct: 767 NKSHAAAYAVVSYQTAWLKANHAVEFMAGVMNCDIHLTDKLAVYFQEVRRGLKLGTVPPC 826 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 VN F V D ++ Y+L A+K VG R ++EA A KPF +L DF RVD K++ +R Sbjct: 827 VNRSLATFDVVDGKLVYALGALKNVGVDAMRLVVEARAGKPFVTLFDFARRVDLKRVGKR 886 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 LE + AGA D +R ++L+SLD + Y+ V + R++ ++F E G + L Sbjct: 887 PLEMMARAGAFDVLDSNRRRVLESLDALVAYSVAVHEQRSSNQVSLFG-EGGDDLPEPRL 945 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLA 998 ++ R E + +GFY SGHPLD + P LR+ G+ E + R+A Sbjct: 946 PNVPDWLAAERLGEEFKAIGFYLSGHPLDDHMPGLRRKGVLTLSEVEGKAQNGAFLARMA 1005 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V +Q++K+ +G+R + S+P+ +YE F Sbjct: 1006 GVVSGRQERKSARGNRFAFAQLSDPSGQYEVTIF 1039 >gi|83954740|ref|ZP_00963451.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1] gi|83841024|gb|EAP80195.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1] Length = 1177 Score = 980 bits (2534), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/1068 (47%), Positives = 693/1068 (64%), Gaps = 58/1068 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++P F+HL+ HS YSLLEGAL L + D PA+A+TDTNN+F+ALEFS Sbjct: 1 MAQAPRFIHLRTHSEYSLLEGALRLKKLPDLCKGADMPALALTDTNNMFAALEFSVAMAG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D+ G+ P P +VLL + GY+ L++L S +Y+ D+ Sbjct: 61 AGVQPIIGCQVDL----AYVKVQPGEKPRDPAP-VVLLAQSEAGYENLMKLNSCLYI-DK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G ++ L L+ + GLI LTGG+ GP+ + AE + F DRLYV Sbjct: 115 GGALPQVTLEELEALNG-GLICLTGGAGGPVGQLLQGGQRPAAEALMARLHGAFADRLYV 173 Query: 185 NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D + E V++AY +PLVATN+ F + + YEAHD L+ +A Sbjct: 174 ELQRHPGEDGQPVAEQLTERGFVEMAYDMGIPLVATNDVYFPNADMYEAHDALICIADGA 233 Query: 239 VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q+ +R R+T HY K+++EMV++F+DLPEA+ENTVEIA+RC+F+ PILP+F + Sbjct: 234 YVDQQHERRRLTAQHYFKSQAEMVTLFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ++++++ L+N+ L+V I ++Y +RLDFEL +I M F GYF Sbjct: 294 DEIEELKRQAHEGLKNR----LKV------IPHATTVEEYEKRLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK NNIPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDNNIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ A+AD+ R RE + V RLL Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD--------- 587 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D Sbjct: 524 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583 Query: 588 ---------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 F G+ D++ IP DD +Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 HVAADGTELFEPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG+ + S+HP ID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGQRERESVHPSIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA NG+ K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R+ + + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVD 873 PP VN FKV + + Y+L A+K VG + I E DKPF +L D RVD Sbjct: 824 PPCVNRSDATFKVVEGALVYALGALKNVGVEAMKLITEGRKVDGVDKPFATLFDLARRVD 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 K++ +R LE L +GA D +R ++ QSLD + Y+ + + + + ++F E G Sbjct: 884 LKRVGKRPLEMLARSGAFDQLDNNRRRVWQSLDGLVSYSAAIHEQKASNQVSLFG-EAGD 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKG--------YE 984 + + ++ R E + +GFY SGHPLD Y P+ RK G Sbjct: 943 DLPEPRIVPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSATGGVPFLTLDELT 1002 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E V+ N RLA +V +Q++K+ +G+R + S+P YE F Sbjct: 1003 EKVSVKGAMNARLAGIVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050 >gi|114569928|ref|YP_756608.1| DNA polymerase III subunit alpha [Maricaulis maris MCS10] gi|114340390|gb|ABI65670.1| DNA polymerase III, alpha subunit [Maricaulis maris MCS10] Length = 1147 Score = 980 bits (2534), Expect = 0.0, Method: Compositional matrix adjust. Identities = 521/1031 (50%), Positives = 687/1031 (66%), Gaps = 30/1031 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+V S YS+LEGA+ + +++ PAIA+TDTNNLF ALEFS+ AG+QPI Sbjct: 7 FVHLRVRSPYSVLEGAIRMPKMVEACQTHGMPAIALTDTNNLFGALEFSEVLSGAGVQPI 66 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC L + + D + G+ P ++VLL GY L+ L S YL G + Sbjct: 67 VGCTLKVRLGD----PHPGERAEPD-GTLVLLAQDEVGYGNLMALSSAAYLDVDGSEEPH 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I S + + GLI LTGG G ++R A L FGDRLYV LQRH Sbjct: 122 IPFSLVLDHAA-GLIALTGGPDGLLNRLITGGRQPEAATYLDQLASAFGDRLYVELQRH- 179 Query: 191 GYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G + E++ +V AY +LPLVATN + F + ++AHD L+ ++ S+ VS DR RV Sbjct: 180 GLEAELEAEDWLVGQAYARDLPLVATNEAYFPDQSMHKAHDALLCISESSFVSVADRRRV 239 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T DHYL EM + F+DLPEAL NT+EIARRC+F ++ HAPILP F + + E Sbjct: 240 TADHYLTTPEEMNARFADLPEALTNTIEIARRCAFRVRTHAPILPSFPTEGG----RTEV 295 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL +A GL RLA +I DYR RLDFEL++I +M F GYFLIV+DFIQWAK Sbjct: 296 EELIARAHEGLTDRLA--SINAAAPEADYRARLDFELDIIKQMGFPGYFLIVSDFIQWAK 353 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N+IPVGPGRGSGAGS+ AYALTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQ+RR Sbjct: 354 NNDIPVGPGRGSGAGSLVAYALTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQERRG 413 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVIRYVQ +YGH+RVAQIITFG+LQA+A +RD GR LQ+P VDRL K++P +PA+PV+ Sbjct: 414 EVIRYVQEQYGHDRVAQIITFGTLQARAVVRDTGRVLQLPLGLVDRLAKMVPANPANPVT 473 Query: 489 L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L QA+ + R RE R D SVD LL ++ KLEGL+R+ASTHAAG+VIGDR LS+LVP+YR Sbjct: 474 LAQALDIEPRLREMRRDDESVDTLLTVALKLEGLFRNASTHAAGVVIGDRKLSELVPLYR 533 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++ ++L ++A G V D+ + FDD Sbjct: 534 DPRSDIPATQFNMKWVEPAGLVKFDFLGLKTLTVIARALGYIASTGKDVPDIEGLDFDDQ 593 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T+ LL + +G+FQLESSGMR L+ M+PD IED+IAL+SLYRPGP+ NI VY +RK Sbjct: 594 ATFDLLQSGHAIGVFQLESSGMRDTLKKMKPDAIEDLIALISLYRPGPMKNIDVYVDRKF 653 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+ ++ +H ++ +L ET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK KEEMD Sbjct: 654 GRAEVDCLHADLEGVLSETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKKKEEMD 713 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 KQK RF+ GA G+S+ A IFEL+A+FA YGFNKSHAAAYA I+Y+T ++K +YPVE Sbjct: 714 KQKVRFLEGAEAKGVSREKASYIFELVAEFAGYGFNKSHAAAYAAIAYRTGYLKANYPVE 773 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+AA M+L+ N +K+ F Q+ R+ + + PP VN DF V + I ++L AI+ VG Sbjct: 774 FMAALMSLDAANTDKLSAFFQEVRRMKLDVRPPDVNASQADFSVEEGTIRFALGAIRNVG 833 Query: 847 TTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 HI+E +A+ PF L DF RVD +++N+R E+L AGA D R +++ S Sbjct: 834 FVAMEHIVEERTANGPFRDLYDFAERVDPRQVNKRTFENLAKAGAFDSLDPDRARVMASA 893 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE-----NSSVRFENEQRVLG 960 + + AQ + R + ++F G ++ LE+ + ++ R + E +G Sbjct: 894 ETLISMAQHAAEQRESAQASLF----GGGGEEAQLERPRLPEPDPWTATQRLDAELSAIG 949 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRK-GSRIGW 1017 FY SGHPLD L G+ + E+ A + +RLA MV +Q++ + K G R W Sbjct: 950 FYLSGHPLDDLTEHLAGRGVVFFAEAPARVADGATALRLAGMVRRRQERVSNKNGERFAW 1009 Query: 1018 VTFSEPAKEYE 1028 T S+P E+E Sbjct: 1010 TTLSDPTGEFE 1020 >gi|144899840|emb|CAM76704.1| DNA polymerase III alpha subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 1159 Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/1041 (48%), Positives = 687/1041 (65%), Gaps = 31/1041 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ H++YSL EGA+ L ++ PAI I DT NLF ALEFS AGIQPI Sbjct: 12 FVHLRTHTAYSLSEGAIKLKQLIKLCEKQMMPAIGIADTGNLFGALEFSTSCADAGIQPI 71 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGCQ+ + + + G+ P P +VLL + GY L++LVS+ YL ++ + Sbjct: 72 IGCQVAVRREGEAPARD-GRKPDPDW--LVLLCQSETGYANLLKLVSKAYLETDAGETPQ 128 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L L E + GLI+LTGG GP++R + AE L+ + F R YV LQRH Sbjct: 129 VTLHDL-ETRSAGLILLTGGPKGPVNRLLADGQNDKAEILLVRLAQGFPGRAYVELQRHG 187 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + R E +V LAY H+LPLVATN F YEAHD L+ +A V+Q +R R+T Sbjct: 188 EENENRAEPGLVNLAYKHDLPLVATNEPFFADRGMYEAHDALICIAEGAYVAQDERRRLT 247 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P+HY K+ +EM +F+DLPEA +NT+ +A+RC+F++ PILP F D + + E Sbjct: 248 PEHYFKSPAEMRELFADLPEACDNTLVVAQRCAFMVAKRKPILPPF---RMDGLTEAEV- 303 Query: 310 ELRNKAVAGLEVRLAQGAIAKG-------YHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 LR GL RL + G + A+ YR+R+++E+ VI +M F GYFLIV+D Sbjct: 304 -LRKMCWDGLAQRLEKHVFQPGMTEEEREHVARPYRERIEYEIGVIEQMGFPGYFLIVSD 362 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K ++IPVGPGRGSGAGS A+ALTITD+DPLR+ LLFERFLNP+R+SMPDFDIDF Sbjct: 363 FIQWSKAHDIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSMPDFDIDF 422 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+E IRYVQ+KYG+ +VAQIITFG LQA+A LRDVGR LQMPY QVDR+CK++PN+ Sbjct: 423 CQDRREETIRYVQDKYGYHQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRICKMVPNN 482 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA PV+L QA+ + +EAR D +V LL++ KLEGLYRHASTHAAG+VIGDR L + Sbjct: 483 PASPVTLEQALEIEPLLKEARERDEAVAHLLDMGMKLEGLYRHASTHAAGVVIGDRSLDE 542 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT++ ++ + + +G+ VDLS Sbjct: 543 LVPLYRDPRSDMPVTQFNMKWVEAAGLVKFDFLGLKTLTVMITAIKHIKKTKGLDVDLSA 602 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY LLT G+FQLESSGMR L M+P+ +ED+IA+V+LYRPGP+D I Sbjct: 603 LPLDDQATYELLTRGDAAGVFQLESSGMRDVLRKMRPNQLEDLIAVVALYRPGPMDQIPR 662 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y K+G E+ +HPL++P+LKET G+++YQEQVMQIAQ+LSGYSL AD+LRRAMGKK Sbjct: 663 YIACKHGLEQPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLLRRAMGKK 722 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 IKEEM+ Q++ F+ GA + A IF+ +AKFA+YGFNKSHAAAYA+I+YQTAW+K Sbjct: 723 IKEEMEAQRKTFVDGAVARAVDGDQASMIFDKVAKFAEYGFNKSHAAAYALIAYQTAWLK 782 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835 ++P EF+AA+MT EM N +K+ F Q+ + I+++PP +N F V G + + Sbjct: 783 ANHPAEFMAATMTYEMANTDKLNSFRQELDRLKIKLLPPDINKSQATFSVEKLADGSHAV 842 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y+LAA+K VG R I E P+ L DF R+D+K+LNRR +E++V AG D Sbjct: 843 RYALAALKNVGEGACRSIAEERERSGPYKDLFDFARRLDTKQLNRRQMENMVRAGVFDSL 902 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R ++ ++ + + +Y + R + ++ G + LE S + + Sbjct: 903 EKNRGKVFKNCEGLLRYGAGEAEQRQSSQMSLLG---GNVAPPPKLENASDWSPHEKLTQ 959 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKTRK 1011 E +GFY S HPLD + L+++G+ E ++ ++LA ++SKQ++ + K Sbjct: 960 EFDAIGFYLSAHPLDAFSKSLKRLGVLKISELPKHLQAGGKSRVKLAGSMLSKQERTSAK 1019 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 GSR +VT S+ + YE F Sbjct: 1020 GSRYAFVTASDSSGMYEVTCF 1040 >gi|83943739|ref|ZP_00956197.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36] gi|83845419|gb|EAP83298.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36] Length = 1177 Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/1068 (47%), Positives = 692/1068 (64%), Gaps = 58/1068 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++P F+HL+ HS YSLLEGAL L + D PA+A+TDTNN+F+ALEFS Sbjct: 1 MAQAPRFIHLRTHSEYSLLEGALRLKKLPDLCKGADMPALALTDTNNMFAALEFSVAMAG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D+ G+ P P +VLL + GY+ L++L S +Y+ D+ Sbjct: 61 AGVQPIIGCQVDL----AYVKVQPGEKPRDPAP-VVLLAQSEAGYENLMKLNSCLYI-DK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G ++ L L+ + GLI LTGG+ GP+ + AE + F DRLYV Sbjct: 115 GGALPQVTLEELEALNG-GLICLTGGAGGPVGQLLQGGQRPAAEALMARLHGAFADRLYV 173 Query: 185 NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D + E V++AY +PLVATN+ F + YEAHD L+ +A Sbjct: 174 ELQRHPGEDGQPVAEQLTERGFVEMAYDMGIPLVATNDVYFPKADMYEAHDALICIADGA 233 Query: 239 VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q+ +R R+T HY K+++EMV++F+DLPEA+ENTVEIA+RC+F+ PILP+F + Sbjct: 234 YVDQQHERRRLTAQHYFKSQAEMVTLFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ++++++ L+N+ L+V I ++Y +RLDFEL +I M F GYF Sbjct: 294 DEIEELKRQAHEGLKNR----LKV------IPHATTVEEYEKRLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK NNIPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDNNIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ A+AD+ R RE + V RLL Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD--------- 587 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D Sbjct: 524 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583 Query: 588 ---------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 F G+ D++ IP DD +Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 HVAADGTELFEPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG+ + S+HP ID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGQRERESVHPSIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA NG+ K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R+ + + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVD 873 PP VN FKV + + Y+L A+K VG + I E DKPF +L D RVD Sbjct: 824 PPCVNRSDATFKVVEGALVYALGALKNVGVEAMKLITEGRKVDGVDKPFATLFDLARRVD 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 K++ +R LE L +GA D +R ++ QSLD + Y+ + + + + ++F E G Sbjct: 884 LKRVGKRPLEMLARSGAFDQLDNNRRRVWQSLDGLVSYSAAIHEQKASNQVSLFG-EAGD 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKG--------YE 984 + + ++ R E + +GFY SGHPLD Y P+ RK G Sbjct: 943 DLPEPRIVPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSATGGVPFLTLDELT 1002 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E V+ N RLA +V +Q++K+ +G+R + S+P YE F Sbjct: 1003 EKVSVKGAMNARLAGIVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050 >gi|83952291|ref|ZP_00961023.1| DNA polymerase III subunit alpha [Roseovarius nubinhibens ISM] gi|83837297|gb|EAP76594.1| DNA polymerase III subunit alpha [Roseovarius nubinhibens ISM] Length = 1163 Score = 979 bits (2530), Expect = 0.0, Method: Compositional matrix adjust. Identities = 517/1060 (48%), Positives = 690/1060 (65%), Gaps = 56/1060 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL++H+ YSLLEGA+ L + A PA+A+TD+NN+F+ALEFS A Sbjct: 1 MSTAPRFIHLRLHTEYSLLEGAMRLKKLPGLCANMDMPAVAVTDSNNMFAALEFSVSAQG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D + ++ P +VLL GY+ L++L S +YL + Sbjct: 61 AGVQPIMGCQVDFHYDE--AAGDEAIAP------LVLLAQNEAGYENLMKLNSCLYL--R 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G S+ + E EGLI LTGG GP+ R + VAE + K + RLY+ Sbjct: 111 GDGSLPHVIIEELERHAEGLICLTGGPDGPVGRLLQAGRAPVAEALVARLAKAYPTRLYI 170 Query: 185 NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G +R E V++AY LPLVATN+ F ++E +EAHD ++ VA Sbjct: 171 ELQRHPGENGQPEAERLTERGHVEMAYAMGLPLVATNDVYFPNKEMFEAHDAMLCVAEGA 230 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q R R+TP+HYLK EM ++F+DLPEALENTVEIARRC+F PILP+F + Sbjct: 231 YVDQSGPRRRLTPEHYLKTPQEMATLFADLPEALENTVEIARRCAFGCYRRDPILPKFAD 290 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ELR A AGL+ RLA I +DY++RLDFEL +I M F GYF Sbjct: 291 DEV--------AELRRMANAGLQARLA--VIPHAASVEDYQKRLDFELGIIEGMGFPGYF 340 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 341 LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 400 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ+KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 401 FDIDFCMDRREEVIRYVQDKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 460 Query: 478 LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS+ QA+A + R RE + V+RLL K+EGL R+ASTHAAG+VIGD Sbjct: 461 MIPVEGVKPVSIEQALAQEERLREEARREEVVERLLNYGMKVEGLLRNASTHAAGVVIGD 520 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD--------- 587 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D Sbjct: 521 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIDQIKGGGRHL 580 Query: 588 ---------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 + G D+ IP DD +TY L T+ +FQ+ESSGM AL+ M+P Sbjct: 581 HQAADGATLYEPPEGAVDDIGQIPLDDAKTYELYARAKTVAVFQVESSGMMDALKRMKPT 640 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG ++ S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 641 CIEDIVALVALYRPGPMENIPTYCEVKNGVKERESVHPLIDHILEETQGIIVYQEQVMQI 700 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKIKE MD ++ +F GA++NG+ K A +F+LL KFA+ Sbjct: 701 AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 760 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ ++ + + Sbjct: 761 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVKKGLGLDWL 820 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PP VN F V D ++Y L A+K VG R I +A DKPF +L DF RVD KK+ Sbjct: 821 PPCVNRSEARFIVRDGVLHYGLGALKNVGVDAMRLITQARGDKPFATLYDFARRVDLKKI 880 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ SL+ + Y+ + + R + ++F G D Sbjct: 881 GKRPLEMLARAGAFDELDRNRRRVFDSLEGLMNYSAAIHEQRNSNQVSLF----GEAGDD 936 Query: 938 ITLEK-FSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 + + VE+ + R E R +GFY SGHPLD Y L++ +K +E RG Sbjct: 937 LPEPRIMPVEDWLPAERLTEEFRAVGFYLSGHPLDDYMAALKRKDVKTLDEVEMLARGGA 996 Query: 995 I--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +LA +V +Q++K+ +G+R +V S+ YE F Sbjct: 997 CIAKLAGVVAGRQERKSARGNRFAFVQLSDTTGGYEVTMF 1036 >gi|16126169|ref|NP_420733.1| DNA polymerase III subunit alpha [Caulobacter crescentus CB15] gi|221234940|ref|YP_002517376.1| DNA polymerase III subunit alpha [Caulobacter crescentus NA1000] gi|68565608|sp|Q9A700|DPO3A_CAUCR RecName: Full=DNA polymerase III subunit alpha gi|239977223|sp|B8GWS6|DPO3A_CAUCN RecName: Full=DNA polymerase III subunit alpha gi|13423381|gb|AAK23901.1| DNA polymerase III, alpha subunit [Caulobacter crescentus CB15] gi|220964112|gb|ACL95468.1| DNA polymerase III alpha subunit [Caulobacter crescentus NA1000] Length = 1143 Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/1031 (48%), Positives = 682/1031 (66%), Gaps = 23/1031 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+V S+YSLLEGA+ + I A + PA + D NLF ALE+S A AG+QP Sbjct: 8 GFVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYAKDAGVQP 67 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC + + + + + P+++LL GY L EL S YL + Sbjct: 68 IIGCAIPV-----VGIGGGPTERWARAPTLMLLAQNERGYLNLSELSSIAYL--DSAELP 120 Query: 130 RICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + W + +EGLI+L+GG+ GP+D F + A L ++FGDR YV LQR Sbjct: 121 EPVVPWAKVAEHSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQR 180 Query: 189 HRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G R E +V AY H++PLVATN+ F Y+AHD L+ ++ V Q +R Sbjct: 181 H-GLPRQAAAEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDERR 239 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 RVTP+H+ K EM +F+DLPEA +NT++IARRC+F++ PILP F + + Sbjct: 240 RVTPEHWFKPAEEMRKLFADLPEACDNTLDIARRCAFMVHKRDPILPSFPTGDG----RN 295 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E EL ++A GL++RL + ++Y +RLDFEL +I +M F GYFLIV+DFI+W Sbjct: 296 EAEELEHQAREGLKMRLE--GLTLSAPEEEYWKRLDFELGIIKKMGFPGYFLIVSDFIKW 353 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 K + IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQ+R Sbjct: 354 GKAHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQER 413 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P VDRLCK++PN+PA P Sbjct: 414 REEVISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAP 473 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L QAI + R ++A+ D +V L+++ +LEGL+R+ASTHAAG+VIGDRPL+QL P+ Sbjct: 474 VTLAQAIDLEPRLKQAKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPL 533 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++ L +RG ++DL +PFDD Sbjct: 534 YKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGFEIDLGKLPFDD 593 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY LL + T+G+FQLES GMR L M+ IE+I AL+SLYRPGP+DNI + + K Sbjct: 594 AKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVDCK 653 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G++ + ++HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KEEM Sbjct: 654 FGRKPVDTLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEEM 713 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D QK RF+SGA + + + + +IFEL+AKFA YGFNKSHAAAYA ISYQTAW+K + PV Sbjct: 714 DLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLKANTPV 773 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF AASM+L++ N +K+ F QDAR+F I + P VN DF+V + + Y+L AI+ V Sbjct: 774 EFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEVENGEVLYALGAIRNV 833 Query: 846 GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G +H++ A+ PF + DF R+D +++N+R +E+L AGA D +R Q++ S Sbjct: 834 GLEAMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAFDSIHKNRAQIVAS 893 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 D + +AQ +R +F + G + + L K N + E +GFY + Sbjct: 894 ADVLIAHAQSCHADRQGGQGGLFGSDPG--AGRPRLSKTENWNQVDLLDEELSAVGFYLT 951 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 GHPL+ +LR+ E++A R+ +V +Q++ ++ G + +V+ S+ Sbjct: 952 GHPLEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERASQSGEKFAFVSLSD 1011 Query: 1023 PAKEYEANFFP 1033 P EYE + P Sbjct: 1012 PTGEYEVLYPP 1022 >gi|86136285|ref|ZP_01054864.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193] gi|85827159|gb|EAQ47355.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193] Length = 1170 Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/1063 (47%), Positives = 694/1063 (65%), Gaps = 55/1063 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+ H+ YSLLEGAL L + D + PAIA+TD+NNLFSALEFS A Sbjct: 1 MTNAPRFIHLRSHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFSALEFSVSASK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ + G+ P P P +VLL + GY+ L++L S +YL Sbjct: 61 AGVQPIVGCQIDLRFVE----PAPGERPQPPAP-LVLLAQSEAGYEHLMKLNSCLYL--- 112 Query: 125 GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + L+++ T +I L+GG GP+ R AE+ + K +F DRL Sbjct: 113 -RQGSELPYVTLEDLATNAGDVICLSGGPDGPVGRLLRQGQRPAAEELMQRLKAIFADRL 171 Query: 183 YVNLQRHRGYDRYRESQV------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 YV LQRH G D E++ V++AY +LPLVATN+ F + E YEAHD ++ +A Sbjct: 172 YVELQRHPGEDGQPEAEKLSERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAE 231 Query: 237 STVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 V Q + R R+T HY K++ EMV++F+DLPEA+ENTVEIA+RC+F + PILP+F Sbjct: 232 GAYVDQSEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFKAYLRDPILPKF 291 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + E ELR A GL+ RLA I ++Y++RLDFEL +I M F G Sbjct: 292 ADDEV--------AELRRIANEGLQNRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPG 341 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SM Sbjct: 342 YFLIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSM 401 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL Sbjct: 402 PDFDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRL 461 Query: 476 CKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP + P+S+ ++ ++ R E +P VDRLL+ ++EGL R A THAAG+VI Sbjct: 462 SKLIPVEGVKPMSIVDSLKEEPRLAEEAKNEPVVDRLLKYGMQVEGLLRSAGTHAAGVVI 521 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 GDRPL LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G Sbjct: 522 GDRPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLIKQSGR 581 Query: 595 KV------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 + +++ IP DD TY L ++ T+ +FQ+ES+GM AL+ M+ Sbjct: 582 DLHVAADGTPLYEPPTGAVNEINAIPLDDKPTYDLYSSAKTVAVFQVESTGMMDALKRMK 641 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 P CIEDI+ALV+LYRPGP++NI Y KNG +KI S+HPLID +L+ETQG+I+YQEQVM Sbjct: 642 PTCIEDIVALVALYRPGPMENIPTYCEVKNGLKKIESVHPLIDHILEETQGIIVYQEQVM 701 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 QIAQ+++GYSL AD+LRRAMGKKIKE MD ++ +F GA +NG+ A +F+LL KF Sbjct: 702 QIAQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAGENGVPAKKASEVFDLLEKF 761 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQ 815 A+YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + ++ ++ + Sbjct: 762 ANYGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLP 821 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD----KPFDSLEDFCSR 871 +PP VN F V + + Y+L A+K VG R + EA D +PF ++ DF R Sbjct: 822 YVPPCVNRSLATFNVVNGELVYALGALKNVGVDVMRLVAEARNDDGHERPFVNIFDFARR 881 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V+ KK+ +R LE L AGA D +R ++ SL+ + Y+ + + + + ++F E Sbjct: 882 VNLKKIGKRPLEMLARAGAFDQLDRNRRRVFDSLEGLVNYSNAIHEQKNSNQVSLFG-EA 940 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATI 990 G + L + R E + +GFY SGHPLD Y P L++ + +E V Sbjct: 941 GDDLPEPRLANTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVMVKAE 1000 Query: 991 RGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 RG + ++A +V +Q++K+ +G+R + S+ YE F Sbjct: 1001 RGPFLAKMAGVVAGRQERKSARGNRFAFAQLSDTTGGYEVTIF 1043 >gi|126737384|ref|ZP_01753119.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6] gi|126721969|gb|EBA18672.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6] Length = 1170 Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/1061 (47%), Positives = 695/1061 (65%), Gaps = 51/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+ H+ YSLLEGAL L + D + PAIA+TD+NNLFSALEFS A Sbjct: 1 MTNTPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFSALEFSVSASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D+ + G+ P P P +VLL GY+ L++L S +YL Q Sbjct: 61 AGVQPIIGCQVDLRYFE----PAPGERPKPPAP-LVLLAQNEAGYEHLMKLNSCLYL-RQ 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + + L L E+ + +I L+GG GP+ R AE+ + K +F DRLYV Sbjct: 115 GGELPHVTLEELAELAGD-VICLSGGPDGPVGRLLQQGQRPAAEELMQRLKAIFPDRLYV 173 Query: 185 NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G ++ E V++AY +LPLVATN+ F + E YEAHD ++ +A Sbjct: 174 ELQRHPGEQGQPEAEKLSERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+ PILP+F + Sbjct: 234 YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ELR A GL+ RLA I ++Y++RLDFEL +I M F GYF Sbjct: 294 DEV--------AELRRIANEGLQQRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S+ ++ ++ R RE + VDRLL+ ++EGL R A THAAG+VIGD Sbjct: 464 LIPVEGVKPMSIVDSLKEEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G + Sbjct: 524 RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583 Query: 597 ------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD TY L + T+ +FQ+ES+GM AL+ M+P+ Sbjct: 584 HVAEDGSQLYEPPEGAANQINAIPLDDAVTYKLYSAAKTVAVFQVESTGMMDALKRMKPN 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG ++I S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGLKQITSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++ Y+L AD+LRRAMGKKIKE MD ++ +F GA++NG+ K A +F+LL KFA+ Sbjct: 704 AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ EK+ + ++ ++ + + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTEKLAIYFEEVKKGLGLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVD 873 PP VN F V + + Y+L A+K VG R + EA ++PF S+ DF RV+ Sbjct: 824 PPCVNRSEATFNVVNGELVYALGALKNVGVDVMRLVAEARREDGQERPFVSIFDFARRVN 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 KK+ +R LE + AGA D +R ++ +SL+ + Y+ V + + ++F E G Sbjct: 884 LKKVGKRPLEMMTRAGAFDQLDRNRRRVFESLEALVNYSAAVHDQKNSNQVSLFG-EAGD 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RG 992 + L + R E + +GFY SGHPLD Y P L++ + +E +A RG Sbjct: 943 DLPEPRLAGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVMAKAERG 1002 Query: 993 NNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++A +V +Q++K+++G+R + S+ YE F Sbjct: 1003 PFMAKMAGVVAGRQERKSQRGNRFAFAQLSDTTGAYEVTIF 1043 >gi|89070902|ref|ZP_01158137.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516] gi|89043541|gb|EAR49752.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516] Length = 1166 Score = 976 bits (2524), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/1051 (47%), Positives = 689/1051 (65%), Gaps = 47/1051 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VH+ YSLLEGA+ + ++ A + PA+A+TDTNN+F ALEFS+ A AG+QPI Sbjct: 7 FIHLRVHTEYSLLEGAVPVKSLPGLAAGAEMPAVAVTDTNNMFCALEFSEYAAKAGVQPI 66 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GCQLD+ G P P +VLL + GY L++L S YL + + + Sbjct: 67 LGCQLDV----TYVTPEPGAKPEAPAP-VVLLAQSEAGYMNLMKLNSCAYLEGRAEWP-Q 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L L G EGLI LTGG GP+ R A+ + K ++GDRLY+ LQRH Sbjct: 121 VTLQELAAHG-EGLICLTGGPDGPVGRLLRAGQRARAQALVERLKAIYGDRLYMELQRHP 179 Query: 191 G------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK- 243 G +R E V++AY ++PLVATN+ F + YEAHD L+ +A V Q+ Sbjct: 180 GEAGAPEAERLSERGHVEMAYALDIPLVATNDVYFPKTDLYEAHDALICIAEGAYVDQQA 239 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R+TP +Y K++ EM ++F+DLPEALENTVEIARRC++ + APILPRF + E + Sbjct: 240 PRRRLTPQNYFKSQQEMATLFADLPEALENTVEIARRCAYKAEKRAPILPRFADDEVE-- 297 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ELR +A GL RLA I ++Y++RLDFEL++I M F GYFLIVADF Sbjct: 298 ------ELRRQANEGLAARLA--VIPHAAPVEEYQKRLDFELDIIEGMGFPGYFLIVADF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR++LLFERFLNP+R+SMPDFDIDFC Sbjct: 350 IKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYALLFERFLNPERVSMPDFDIDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K+IP + Sbjct: 410 MDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQLPYMQVDKLSKMIPVEG 469 Query: 484 AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 PVS++ A+AD+ R REA + V RLL Q++EGL R+ASTHAAG+VIGDRPL +L Sbjct: 470 VKPVSIEKALADEPRLREAAKNEEVVGRLLSYGQQIEGLLRNASTHAAGVVIGDRPLDEL 529 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV------ 596 VP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G + Sbjct: 530 VPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSGRNLHEAADG 589 Query: 597 ------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 ++LIP DD TY L + T+ +FQ+ESSGM AL M+P CIEDI+ Sbjct: 590 SRLYEPAPGAENQMNLIPLDDERTYELYSKARTVAVFQVESSGMMDALRRMKPTCIEDIV 649 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ALV+LYRPGP++NI Y KNG +HP +D +L ETQG+I+YQEQVMQIAQ ++G Sbjct: 650 ALVALYRPGPMENIPKYCEVKNGISDRDKLHPSVDHILDETQGIIVYQEQVMQIAQEMAG 709 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKKI+E MD ++ +FI+GA NG+ A+ ++ LL KFA+YGFNKS Sbjct: 710 YSLGGADLLRRAMGKKIQEAMDAERPKFIAGAKANGVDDKKALEVWNLLDKFANYGFNKS 769 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNT 823 HAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + Q+ ++ + PP VN Sbjct: 770 HAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFQELKKGLGLPWDPPCVNR 829 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V + R+ Y+L A+K VG + I+EA KPF ++ DF R D K++ +R LE Sbjct: 830 SEATFDVQEGRLLYALGALKNVGVEAMKLIVEARDGKPFSNVYDFARRTDLKRVGKRSLE 889 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 L AGA D +R ++ +SLD + Y+ V + R + ++F + G + L Sbjct: 890 MLARAGAFDELDPNRRRVFESLDALTAYSAAVHEQRQSNQSSLFG-DGGDDLPEPRLPGV 948 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMV 1001 + R E + +GFY SGHPLD Y L++ + +E +A G +++A V Sbjct: 949 PDWLPAERLAEEFKAVGFYLSGHPLDDYLAPLKRKQVLTLDEVMAKAAGGACIVKMAGTV 1008 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 S+Q++K+ +G+R +V S+P +YE F Sbjct: 1009 ASRQERKSARGNRFAFVQLSDPTGQYEVTMF 1039 >gi|254477258|ref|ZP_05090644.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp. R11] gi|214031501|gb|EEB72336.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp. R11] Length = 1170 Score = 976 bits (2524), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/1061 (47%), Positives = 693/1061 (65%), Gaps = 51/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++P F+HL+ H+ YSLLEGA+ L + D + PAIA+TD+NNLF+ALEFS A Sbjct: 1 MTQNPRFIHLRTHTEYSLLEGAVRLKKLPDLCKKYEMPAIAVTDSNNLFAALEFSVSASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ D G+ P P P +VLL + GY+ L++L S +Y+ + Sbjct: 61 AGVQPIMGCQVDLRFTD----PAPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYM-RE 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + + L L + + +I L+GG GP+ R AE + K +F DRLYV Sbjct: 115 GSELAHVTLEELAQYAGD-VICLSGGPDGPVGRLLQMGQRSAAEALMQRLKAIFPDRLYV 173 Query: 185 NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G ++ E +++AY +LPLVATN+ F + E YEAHD ++ +A Sbjct: 174 ELQRHPGEHGQPEAEQLTERGHIEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K++ EMV++F+DLPEALENTVEIA+RC+F+ PILP+F + Sbjct: 234 YVDQVEPRRRLTAQHYFKSQEEMVALFADLPEALENTVEIAKRCAFMAYRRDPILPKFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ELR A GL+ RLA I ++Y++RLDFEL +I M F GYF Sbjct: 294 DEV--------AELRRIANEGLQQRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S+ ++ ++ R RE + VDRLL+ ++EGL R A THAAG+VIGD Sbjct: 464 LIPVEGVKPMSIADSLKEEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591 RPL LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q Sbjct: 524 RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583 Query: 592 -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 G + ++ IP DD TY L + T+ +FQ+ES+GM AL+ M+P Sbjct: 584 HIAADGTQLYDPPEGAENQINAIPLDDKVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++ Y+L AD+LRRAMGKKIKE MD ++ +F GA++NG+ A +F+LL KFA+ Sbjct: 704 AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + ++ ++ + + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM----EASADKPFDSLEDFCSRVD 873 PP VN F V + Y+L A+K VG R + E+ DKPF +L DF RVD Sbjct: 824 PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGQDKPFATLFDFARRVD 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 KK+ +R LE +V AGA D +R ++ +SL + Y+ +++ + + ++F E G Sbjct: 884 LKKVGKRPLEMMVRAGAFDQLDSNRRRVFESLGALVDYSAAIQEQKNSNQVSLFG-EAGE 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RG 992 + L + R E + +GFY SGHPLD Y P L++ + +E A RG Sbjct: 943 DLPEPRLPNVPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002 Query: 993 NNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++A +V +Q++K+ +G+R + S+ YE F Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTLGAYEVTLF 1043 >gi|84683471|ref|ZP_01011374.1| DNA polymerase III, alpha subunit [Maritimibacter alkaliphilus HTCC2654] gi|84668214|gb|EAQ14681.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium HTCC2654] Length = 1171 Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/1065 (47%), Positives = 697/1065 (65%), Gaps = 58/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+VH+ YSLLEGA+ + + + PA+A+TDTNN+F ALEFS A Sbjct: 1 MAATPRFIHLRVHTEYSLLEGAVPVKKLAGLCESMDMPAVAVTDTNNMFCALEFSVTASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+ + G+ P P P +VLL GY+ L++L S +YL Sbjct: 61 AGVQPIIGCQVTV----AFDTPEPGEQPRPGAP-VVLLAQNEGGYENLMKLNSCLYLDKH 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + L+ L++ + GLI LTGG+ GP+ + A++ + F ++F DRLYV Sbjct: 116 GALP-EVTLAELEQY-SAGLICLTGGAEGPVGHWLQQGNRAKAQELMTWFHRVFADRLYV 173 Query: 185 NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH G ++ E V++AY +PLVATN+ F + YEAHD L+ +A Sbjct: 174 ELQRHPGEGGQLTEPEQKTERGFVEMAYAMGIPLVATNDVYFPKTQLYEAHDALICIAEG 233 Query: 238 TVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V Q++ R +TP HY K+ EM ++F+DLPEA+ENTVEIARRC+F+ PILP+F Sbjct: 234 AYVDQQEPRRHLTPQHYFKSPQEMATLFADLPEAIENTVEIARRCAFMAYRRDPILPKFA 293 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + E D ELR +A GLE RLA I ++Y RL+FEL +I M F GY Sbjct: 294 DDEVD--------ELRRQAKEGLEARLA--VIPHAAPVEEYEARLEFELGIIEGMGFPGY 343 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+W+K N IP+GPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMP Sbjct: 344 FLIVADFIKWSKDNGIPIGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMP 403 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+E IRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL Sbjct: 404 DFDIDFCMDRREETIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463 Query: 477 KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP + PVS+ QA+ D+ R RE A+ V+RLL ++++EGL R+ASTHAAG+VIG Sbjct: 464 KLIPVEGVKPVSITQALKDEPRLREEARAEEVVERLLRYAEQVEGLLRNASTHAAGVVIG 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 DRPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + +G Sbjct: 524 DRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIDLIHGQGRD 583 Query: 596 V------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 + ++LIP DD +TY L + T+ +FQ+ES+GM AL M+P Sbjct: 584 LHIGPDGAEIYTPAEGGENQINLIPLDDEKTYRLYASAKTVAVFQVESTGMMDALRRMKP 643 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI Y KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQ Sbjct: 644 TCIEDIVALVALYRPGPMENIPTYCEVKNGQREIESVHPLIDHILEETQGIIVYQEQVMQ 703 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ ++GYSL AD+LRRAMGKKIKE MD ++ +F GA++ G+ K A +F+LL KFA Sbjct: 704 IAQEMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAEKGVDKKKASEVFDLLEKFA 763 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816 +YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R+ +I+I Sbjct: 764 NYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGVYAEEVRRGLDIEI 823 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRV 872 +PP VN F V + R+ Y + A+K VG + I+EA +KPF +L D RV Sbjct: 824 VPPCVNRSEAMFCVSEGRVVYGIGALKNVGVEAMKLIVEARKVEGREKPFVNLYDVARRV 883 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D K++ +R +E L AGA D +R ++ +SLD + Y+ + + R + ++F G Sbjct: 884 DLKRVGKRPMEMLARAGAFDELDANRRRVFESLDALVSYSAAIHEQRDSAQVSLF----G 939 Query: 933 TFSDKITLEKFSVENSSV---RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 D + + S + R E + +GFY SGHPLD Y L++ G+ EE Sbjct: 940 EAGDDLPEPRLSNAPDWLPNERLAEEHKAIGFYLSGHPLDDYMAALKRKGVVTLEELTKK 999 Query: 990 I-RGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + R + ++A V +KQ++K+ KG+R +V ++P E F Sbjct: 1000 VERAPCVAKIAGAVSAKQERKSAKGNRFAFVAMTDPTGACEITVF 1044 >gi|126725821|ref|ZP_01741663.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150] gi|126705025|gb|EBA04116.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150] Length = 1170 Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/1064 (47%), Positives = 690/1064 (64%), Gaps = 57/1064 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS YSLLEGA+ + + + PA+A+TDTNNLF+ALE S+ Sbjct: 1 MTNDPRFIHLRVHSEYSLLEGAMRVKKLAGLVKKSNMPAVALTDTNNLFAALEVSETLAK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQ+DI + +G+TP P +V L GY+ L++L S +YL Sbjct: 61 EGLQPIIGCQVDIAAE-----VARGETP-PAPAPLVFLAQNEVGYENLMKLNSCLYLDKA 114 Query: 125 GKQSVRICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 G + + + E+ +GLI LTGG+ GPI + S A+ + ++FGDRL Sbjct: 115 GA----LPSATMAEVAQYNDGLICLTGGADGPIGQLLQSGSLPAAKAMMSELAQVFGDRL 170 Query: 183 YVNLQRHRGYDRYRESQV------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 YV LQRH G + ++++ V++AY LPLVATN+ F + E +EAHD LM ++ Sbjct: 171 YVELQRHPGAEGPQQAEAKTERGFVEMAYEMNLPLVATNDVYFPNTEMFEAHDALMCISQ 230 Query: 237 STVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 V Q D R ++T HY K++ EM+++F+DLPEA+ENTVEIA+RC+F PILP+F Sbjct: 231 GAYVDQLDSRRQLTDQHYFKSQQEMITLFADLPEAIENTVEIAKRCAFKTYKRDPILPKF 290 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + E D ELR +A AGL+ RL I ++Y +RLDFEL +I M F G Sbjct: 291 ADDEVD--------ELRLQAHAGLKARLE--VIPHATSVEEYEKRLDFELGIIEGMGFPG 340 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SM Sbjct: 341 YFLIVADFIKWAKDHEIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSM 400 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL Sbjct: 401 PDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRL 460 Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 K+IP + PVS++ A+AD+ R RE A+ V+RLL Q++EGL R+ASTHAAG+VI Sbjct: 461 SKMIPVEGVKPVSIEKALADEPRLREEAKAEEVVERLLRYGQQVEGLLRNASTHAAGVVI 520 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 GDRPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + G Sbjct: 521 GDRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTIVQNAVDLIKASGR 580 Query: 595 KV------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 + D++ IP DD +Y L T+ +FQ+ESSGM AL M+ Sbjct: 581 SLHVGADGRQLYEPLAGTENDINAIPLDDEASYELYAAAKTIAVFQVESSGMMDALRRMK 640 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 PDCIEDIIALV+LYRPGP++NI + KNG + +HP ID +L ETQG+I+YQEQVM Sbjct: 641 PDCIEDIIALVALYRPGPMENIPKFCEVKNGLSERDKLHPTIDHILDETQGIIVYQEQVM 700 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 QIAQ ++GYSL AD+LRRAMGKK++E MD +K +FI G+S+NG+ + A +++LL KF Sbjct: 701 QIAQEMAGYSLGGADLLRRAMGKKLQEAMDAEKPKFIKGSSENGVDEKKAREVWDLLDKF 760 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ----- 811 A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + + R+ Sbjct: 761 ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDLHLTDKLAVYADEVRKPTDRG 820 Query: 812 -FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870 I+I+PP VN F V + R+ Y+L A+K VG R I A DKPF +L D Sbjct: 821 GMGIEIIPPCVNRSDAVFSVSEGRVVYALGALKNVGVEAMRLITGARGDKPFVTLFDLAR 880 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 R D K++ +R +E L AGA D +R ++ +SLD + Y+ + + R + ++F E Sbjct: 881 RADLKRVGKRPMEMLARAGAFDELDRNRARVSRSLDALVSYSAAIHEQRASNQVSLFG-E 939 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 G + L + R E +GFY SGHPLD Y L++ G+ E+ + Sbjct: 940 AGDDLPEPRLTPCDDWLPAERLSEEFTSIGFYLSGHPLDDYMVALKRSGVMTLHEATQKV 999 Query: 991 RGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G ++LA + +Q++K+ +G+R +V S+ +YE F Sbjct: 1000 AGGAAVVKLAGTISGRQERKSARGNRFAFVQLSDTTGQYEVTMF 1043 >gi|149914036|ref|ZP_01902568.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b] gi|149812320|gb|EDM72151.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b] Length = 1167 Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/1061 (48%), Positives = 687/1061 (64%), Gaps = 54/1061 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP F+HL+VH+ YSLLEGA+ L ++ PA+A+TDTNN+F+ALEFS A Sbjct: 1 MSSSPRFIHLRVHTEYSLLEGAVRLKSLAGLCEKAGMPAVAVTDTNNMFAALEFSVTASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GCQ+D+D + T G+ P P +VLL GY+ L++L S +YL Sbjct: 61 AGIQPIMGCQVDLDYLE----TQPGERAKPPAP-LVLLAQNEAGYENLMKLNSCLYLRGD 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q + L+ L E +G+I LTGG GP+ R A+ + F DRLYV Sbjct: 116 G-QLPHVTLAEL-EAHAQGVICLTGGPDGPVGRLLQAGQRPAAKALMGQLLAAFADRLYV 173 Query: 185 NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D R E V++AY LPLVATN+ F YEAHD L+ VA T Sbjct: 174 ELQRHPGEDGAPEAERLTERGFVEMAYAMGLPLVATNDVYFPDAGMYEAHDALLCVAEGT 233 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K EM ++F+DLPEALENTVEIARRC+F PILPRF + Sbjct: 234 YVDQAEPRRRLTAQHYFKTPQEMATLFADLPEALENTVEIARRCAFGAYRRDPILPRFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E D ELR +A GLE RLA I ++Y +RL+FEL +I M F GYF Sbjct: 294 DEVD--------ELRRQAKEGLEARLA--VIPHAASVEEYHKRLEFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKEQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVD+L K Sbjct: 404 FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDKLSK 463 Query: 478 LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS+Q A+A + R REA ++ VDRLL K+EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIQQALAQEDRLREAARSEEVVDRLLNYGMKVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD--------- 587 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++ Sbjct: 524 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIGQIHAEGRDL 583 Query: 588 ---------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 + G + D+ IP DD +TY L T+ +FQ+ESSGM AL+ M+P Sbjct: 584 HIAADGSPIYEPFEGAENDIGQIPLDDAKTYELYARARTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KN + +HPLID +L ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPKYCEVKNALSERDRLHPLIDHILDETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ ++GY+L AD+LRRAMGKKI+ MD ++ +FI+GA NG+ A+ ++ LL KFA+ Sbjct: 704 AQEMAGYTLGGADLLRRAMGKKIQAAMDAERPKFIAGAKANGVDDAKALEVWNLLDKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLQLPYA 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PP VN F+V ++Y+L A+K VG R I+E DKPF +L D RVD K++ Sbjct: 824 PPCVNRSDAVFQVRGGVLHYALGALKNVGVEAMRLIVEGRGDKPFATLYDVARRVDLKRI 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ S++ + Y+ + +T+ ++F G D Sbjct: 884 GKRPLEMLARAGAFDELDRNRRRVFDSIEPLMNYSAAIFDQKTSSQVSLF----GEAGDD 939 Query: 938 ITLEKFS-VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRG 992 + + S VE+ + R E + +GFY SGHPLD Y LR+ +K +E ++A +G Sbjct: 940 LPEPRLSPVEDWLPAERLTEEFKAIGFYLSGHPLDDYMGALRRKDVKTLDEVTAMAEQKG 999 Query: 993 NNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++A +V +Q++K+ +G+R +V S+ +E F Sbjct: 1000 ALVAKMAGVVSGRQERKSARGNRFAFVQLSDTTGGFEVTLF 1040 >gi|110681190|ref|YP_684197.1| DNA polymerase III subunit alpha [Roseobacter denitrificans OCh 114] gi|109457306|gb|ABG33511.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh 114] Length = 1183 Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/1070 (47%), Positives = 685/1070 (64%), Gaps = 64/1070 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ HS YSLLEGAL L + PA+A+TD NN+F+ALEFS AG+Q Sbjct: 5 PRFIHLRTHSEYSLLEGALRLKKLPSMCRDAGMPALALTDKNNMFAALEFSVAMSGAGVQ 64 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GCQ+D+ + + + P P +VLL + GY+ L+ L S +Y+ D+G Sbjct: 65 PILGCQVDVAYV-TAQPGERERAPAP----VVLLAQSEAGYENLMRLNSCLYI-DKGGAL 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 ++ LS L E G+I LTGG GP+ + A+ + K F DRLY+ LQR Sbjct: 119 PQVTLSEL-ESNAGGIICLTGGPDGPVGQLLQLGQMPAAQALMDRLKAAFQDRLYIELQR 177 Query: 189 HRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 H G +R E V++AY +LPLVATN+ F + + YEAHD L+ +A V Q Sbjct: 178 HPGESGQPEKERLTERGFVEMAYAMDLPLVATNDVYFPNSDMYEAHDALICIAEGAYVDQ 237 Query: 243 KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +D R R+T HY K++SEMV++F+DLPEA+ENTVEIA+RC+F PILP+F + E + Sbjct: 238 QDDRRRLTNQHYFKSQSEMVALFADLPEAIENTVEIAKRCAFQAYRRDPILPKFADDEVE 297 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ELR +A AGL+ RL I +DY +RLDFEL +I M F GYFLIVA Sbjct: 298 --------ELRKQAHAGLKARLE--VIPHAASVEDYTKRLDFELGIIEGMGFPGYFLIVA 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK+ IPVGPGRGSGAGS+ AYALT+TD+DPLR++LLFERFLNP+R+SMPDFDID Sbjct: 348 DFIKWAKEQGIPVGPGRGSGAGSLVAYALTVTDLDPLRYNLLFERFLNPERVSMPDFDID 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP Sbjct: 408 FCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPV 467 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + PVS++ A+AD+ R RE + V RLL Q++EGL R+ASTHAAG+VIGDRPL Sbjct: 468 EGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGDRPLD 527 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD------------- 587 LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ Sbjct: 528 ALVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVEQIMASGRPLHIAA 587 Query: 588 -----FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 + G + D++ IP DD +Y L + T+ +FQ+ESSGM AL+ M+P CIED Sbjct: 588 DGTELYEPAPGTENDINAIPLDDERSYKLYASAKTVAVFQVESSGMMDALKRMKPTCIED 647 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 I+ALV+LYRPGP++NI Y KNG ++ SIHPLID +L+ETQG+I+YQEQVMQIAQ++ Sbjct: 648 IVALVALYRPGPMENIPTYCEVKNGLRELQSIHPLIDDILEETQGIIVYQEQVMQIAQVM 707 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GYSL AD+LRRAMGKKI EEM K++ +F GA NG+ K A +F+LL KFA+YGFN Sbjct: 708 AGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAVANGVDKDKAREVFDLLEKFANYGFN 767 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821 KSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R+ + +PP V Sbjct: 768 KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVRKRLELPWVPPCV 827 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM---------EASADKPFDSLEDFCSRV 872 N FKV D + Y+L A+K VG + I E S DKPF +L D RV Sbjct: 828 NRSDATFKVADGALVYALGALKNVGVEAMKLITDGRRADPGDEGSPDKPFATLFDLARRV 887 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D K++ +R LE L +GA D +R ++ +LD + Y+ + + + + ++F E G Sbjct: 888 DLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSAAIHEQKASNQVSLFG-EAG 946 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK----------MGIKG 982 + L + R E + +GFY SGHPLD Y L++ M + Sbjct: 947 DDLPEPRLHPVDDWQPAERLSEEFKAVGFYLSGHPLDDYMGQLKRKWGNDRGVPFMTLDE 1006 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E V N RLA +V +Q++K+ +G+R + S+P YE F Sbjct: 1007 LTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDPTGAYEVTLF 1056 >gi|294676350|ref|YP_003576965.1| DNA polymerase III subunit alpha [Rhodobacter capsulatus SB 1003] gi|294475170|gb|ADE84558.1| DNA polymerase III, alpha subunit [Rhodobacter capsulatus SB 1003] Length = 1169 Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/1061 (47%), Positives = 690/1061 (65%), Gaps = 60/1061 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VH+ YSLLEGA+ + ++ A PAIA+TDTN +F+ALEFS A AG+Q Sbjct: 4 PRFIHLRVHTEYSLLEGAVPVKKLIKLCDAMNMPAIAVTDTNAMFAALEFSVLAQGAGLQ 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GCQ+ + + + G+ P P +VLL GY L++L S +Y+ D+G Q Sbjct: 64 PIVGCQVSVAYE----VAAPGEKPRLPAP-VVLLAQNEAGYMNLMKLSSCLYV-DKGGQL 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYVNL 186 ++ L L E EGLI L+GG+ GP+ + SQ + RLL + RLYV L Sbjct: 118 PQVTLEDL-EAHAEGLICLSGGAEGPVGK--LLQHSQAGKARLLMERLAACYPTRLYVEL 174 Query: 187 QRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 QRH G +R E V++AY LPLVATN+ F + YEAHD ++ +A Sbjct: 175 QRHPGEGGQLTEGERMTERPFVEMAYDLGLPLVATNDVYFPKSDMYEAHDAMICIAEGAY 234 Query: 240 VSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 V Q + R R+TP HYLK +EM ++F+DLPEALENTVEIA+RC+F PILPRF + Sbjct: 235 VDQIEPRRRLTPQHYLKTEAEMAALFADLPEALENTVEIAKRCAFAAFKRKPILPRFADD 294 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E + ELR +A GL RLA I +Y +RL FEL +I +M F GYFL Sbjct: 295 EVE--------ELRRQAWEGLRARLA--VIPHAVPVAEYEERLKFELGIIEQMGFPGYFL 344 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFI+W K IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDF Sbjct: 345 IVADFIKWGKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDF 404 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RDVGR LQM Y VD+L K+ Sbjct: 405 DIDFCMDRREEVIKYVQGKYGRDKVGQIITFGALLSKAAVRDVGRVLQMSYGHVDKLSKM 464 Query: 479 IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + PVS++ A+AD+ R REA ++ V RLL +Q +EGL R+ASTHAAG+VIGDR Sbjct: 465 IPVEGVKPVSIEKALADEPRLREAAKSEEVVARLLNYAQAIEGLLRNASTHAAGVVIGDR 524 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 PL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G + Sbjct: 525 PLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRPLH 584 Query: 597 -----------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +++LIP DD +TY L T+ +FQ+ES+GM AL M+P C Sbjct: 585 VNPLGETLYTPAEGAANEINLIPIDDAKTYELYAAAKTVAVFQVESTGMMDALRRMKPTC 644 Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 IEDI+ALV+LYRPGP++NI Y K+G + S+HP IDP+LKETQG+I+YQEQVMQIA Sbjct: 645 IEDIVALVALYRPGPMENIPTYCEVKHGLRPLESLHPTIDPILKETQGIIVYQEQVMQIA 704 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFAD 758 Q+++GYSL AD+LRRAMGKKI EEM K++ +FI GA + + I A +F+LL KFA+ Sbjct: 705 QVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFIEGAKATHNIDAKKAGEVFDLLEKFAN 764 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYA++SYQTAW+K ++PVEF+A M ++ +K+ + +AR+ I+++ Sbjct: 765 YGFNKSHAAAYAIVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYTAEARRGLGIEVV 824 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PP VN F V D ++ Y+L A+K VG R I +A DKPF L +F R D K++ Sbjct: 825 PPCVNRSLATFDVVDQKLIYALGALKNVGVEAMRLIEKAREDKPFRDLVEFARRCDLKRI 884 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ +SL+++ ++ V + +++ ++F G D Sbjct: 885 GKRPLEMLARAGAFDKLDPNRKRVFESLESLMAWSAAVAEAKSSAQVSLF----GEAGDD 940 Query: 938 ITLEKFSVENSSV---RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 + + + + + R E + +GFY SGHPLD Y P L++ + + A G Sbjct: 941 LPPPRLADTDDWLPGERLAEEHKAIGFYLSGHPLDDYLPALKRKKVLTLADVTAKALGQG 1000 Query: 995 I---RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A V ++ ++K+ KG+R +V+ S+P YE F Sbjct: 1001 PFIGKIAGQVAARSERKSAKGNRFAFVSLSDPTGPYEVTVF 1041 >gi|163737024|ref|ZP_02144442.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107] gi|161389628|gb|EDQ13979.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107] Length = 1170 Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/1061 (47%), Positives = 689/1061 (64%), Gaps = 51/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+ H+ YSLLEGAL L + D + PAIA+TD+NNLF+ALEFS A Sbjct: 1 MTNAPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFAALEFSVAASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ + G+ P P P +VLL + GY+ L++L S +Y+ + Sbjct: 61 AGVQPIMGCQVDLRFTE----PTPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYM-RE 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + + L L +E +I L+GG GP+ R AE + K +F DRLYV Sbjct: 115 GSELAHVTLEELA-AHSEDVICLSGGPDGPVGRLLQMGQRPAAEALMQRLKAMFPDRLYV 173 Query: 185 NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G ++ E V++AY +LPLVATN+ F + E YEAHD ++ +A Sbjct: 174 ELQRHPGEHGQPEAEQATERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+ PILP+F + Sbjct: 234 YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ELR A GL+ RLA I +DY++RLDFEL +I M F GYF Sbjct: 294 DEV--------AELRRIANEGLQQRLA--VIPHAVSVEDYQERLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S+ ++ ++ R RE + VDRLL+ ++EGL R A THAAG+VIGD Sbjct: 464 LIPVEGVKPMSIVDSLREEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593 RPL LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G Sbjct: 524 RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583 Query: 594 -VKVD--------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 V D ++ IP DD TY L + T+ +FQ+ES+GM AL+ M+P Sbjct: 584 HVAADGTQLYDPPEGAENQINAIPLDDTVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG KI S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGLRKIQSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++ Y+L AD+LRRAMGKKIKE MD ++ +F GA++NG+ A +F+LL KFA+ Sbjct: 704 AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + ++ ++ ++ + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLSLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM----EASADKPFDSLEDFCSRVD 873 PP VN F V + Y+L A+K VG R + E+ DKPF +L DF RVD Sbjct: 824 PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGEDKPFATLFDFARRVD 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 KK+ +R LE L AG D +R ++ SL + Y+ V R + ++F E G Sbjct: 884 LKKVGKRPLEMLARAGGFDQLDPNRRRVFDSLGALVDYSSAVHDQRNSSQVSLFG-EAGE 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RG 992 + L + R E + +GFY SGHPLD Y P L++ + +E A RG Sbjct: 943 DLPEPRLPGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002 Query: 993 NNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++A +V +Q++K+ +G+R + S+ + YE F Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTSGGYEVTLF 1043 >gi|254512245|ref|ZP_05124312.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae bacterium KLH11] gi|221535956|gb|EEE38944.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae bacterium KLH11] Length = 1166 Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/1053 (47%), Positives = 691/1053 (65%), Gaps = 47/1053 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VH+ YSLLEGA+ L + + PA+A+TDTN++FSALEFS A AG+Q Sbjct: 5 PRFIHLRVHTEYSLLEGAVRLKKLPGLCEQMEMPAVAVTDTNSMFSALEFSVAASGAGVQ 64 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GCQ+D+ G+ P P +VLL + GY+ L++L S +Y+ D+G Q Sbjct: 65 PIMGCQVDL----TYVQAQPGEKPKAPAP-LVLLAQSELGYENLMKLSSCLYV-DKGGQL 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 ++ L L + ++GLI LTGG GP+ AE + +F DRLY+ LQR Sbjct: 119 PQVTLEELAD-RSDGLICLTGGPDGPVGHLLQQGQRPAAEALVDRLAGMFPDRLYMELQR 177 Query: 189 HRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 H G D R E V++AY +LPLVATN+ F + + YEAHD L+ +A V Q Sbjct: 178 HPGEDGQPEAERLTERGHVEMAYAKDLPLVATNDVYFPTSDMYEAHDALICIAEGAYVDQ 237 Query: 243 KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++ R R+T HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+ PILP+F + E Sbjct: 238 QEGRRRLTAQHYFKSQQEMVTLFADLPEAIENTVEIAKRCAFMAYRRDPILPKFADDEV- 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ELR A GL+ RLA I ++Y++RLDFEL +I M F GYFLIVA Sbjct: 297 -------AELRRIANEGLQKRLA--VIPHAVTPEEYQERLDFELGIIEGMGFPGYFLIVA 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQWAK +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID Sbjct: 348 DFIQWAKDEDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDID 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP Sbjct: 408 FCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPV 467 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + PVS++ A+ D+ R R+ ++ V+RLL Q++EGL R+ASTHAAG+VIGDRPL Sbjct: 468 EGVKPVSIEKALKDEPRLRDEARSEEVVERLLTYGQQVEGLLRNASTHAAGVVIGDRPLD 527 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS- 599 LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G + ++ Sbjct: 528 ALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRDLHIAP 587 Query: 600 -----------------LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 IP DD TY L + T+ +FQ+ESSGM AL+ M+PDCIED Sbjct: 588 DGTELYEPADGAVNQINAIPLDDEATYKLYSAAKTVAVFQVESSGMMDALKRMKPDCIED 647 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIALV+LYRPGP++NI + KN + ++HP ID +L ETQG+I+YQEQVMQIAQ + Sbjct: 648 IIALVALYRPGPMENIPKFCEVKNKLSQRDTLHPSIDHILDETQGIIVYQEQVMQIAQEM 707 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GYSL AD+LRRAMGKKI+E MD ++ +F+ GA++N + + A ++ LL KFA+YGFN Sbjct: 708 AGYSLGGADLLRRAMGKKIQEAMDAERPKFLKGAAENDVDEAKATEVWNLLDKFANYGFN 767 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821 KSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + ++ R+ ++ +PP V Sbjct: 768 KSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLDLPYVPPCV 827 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881 N F V D + Y+L A+K VG ++E A KPF +L DF RVD KK+ +R Sbjct: 828 NRSQSTFDVVDGELVYALGALKNVGVEAMNLVVEGRAGKPFVNLFDFARRVDLKKVGKRP 887 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 LE L AGA D +R ++ +SLD + +Y+ + + + + ++F E G + L Sbjct: 888 LEMLARAGAFDQLDKNRRRVFESLDPLVQYSAAIHEQKNSNQVSLFG-EAGDDLPEPRLS 946 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAA 999 S + R E + +GFY SGHPLD Y P L++ + +E + R + ++A Sbjct: 947 PSSDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKQVLTLDEVMEKARSGPLIAKMAG 1006 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V +Q++K+ +G+R + S+P +E F Sbjct: 1007 VVAGRQERKSARGNRFAFAQLSDPTGAFEVTLF 1039 >gi|163740552|ref|ZP_02147946.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10] gi|161386410|gb|EDQ10785.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10] Length = 1170 Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/1061 (47%), Positives = 688/1061 (64%), Gaps = 51/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+ H+ YSLLEGAL L + D + PAIA+TD+NNLF+ALEFS A Sbjct: 1 MTNAPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFAALEFSVAASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ + G+ P P P +VLL + GY+ L++L S +Y+ + Sbjct: 61 AGVQPIMGCQVDLRFTE----PTPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYM-RE 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + + L L +E +I L+GG GP+ R AE + K +F DRLYV Sbjct: 115 GSELAHVTLEELA-AHSEDVICLSGGPDGPVGRLLQMGQRPAAEALMQRLKAMFPDRLYV 173 Query: 185 NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G ++ E V++AY +LPLVATN+ F + E YEAHD ++ +A Sbjct: 174 ELQRHPGEHGQPDAEQATERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+ PILP+F + Sbjct: 234 YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAYRRDPILPKFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ELR A GL+ RLA I +DY++RLDFEL +I M F GYF Sbjct: 294 DEV--------AELRRIANEGLQQRLA--VIPHAVSVEDYQERLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S+ ++ ++ R RE + VDRLL+ ++EGL R A THAAG+VIGD Sbjct: 464 LIPVEGVKPMSIVDSLREEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591 RPL LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q Sbjct: 524 RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583 Query: 592 -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 G + ++ IP DD TY L + T+ +FQ+ES+GM AL+ M+P Sbjct: 584 HAAADGTQLYDPPEGAENQINAIPLDDTVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG KI S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGLRKIQSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++ Y+L AD+LRRAMGKKIKE MD ++ +F GA++NG+ A +F+LL KFA+ Sbjct: 704 AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + ++ ++ ++ + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLSLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM----EASADKPFDSLEDFCSRVD 873 PP VN F V + Y+L A+K VG R + E+ DKPF +L DF RVD Sbjct: 824 PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGQDKPFATLFDFARRVD 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 KK+ +R LE L AG D +R ++ SL + Y+ V R + ++F E G Sbjct: 884 LKKVGKRPLEMLARAGGFDQLDPNRRRVFDSLGALVDYSSAVHDQRNSSQVSLFG-EAGE 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RG 992 + L + R E + +GFY SGHPLD Y P L++ + +E A RG Sbjct: 943 DLPEPRLPGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002 Query: 993 NNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++A +V +Q++K+ +G+R + S+ + YE F Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTSGGYEVTLF 1043 >gi|126733665|ref|ZP_01749412.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2] gi|126716531|gb|EBA13395.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2] Length = 1165 Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/1059 (47%), Positives = 688/1059 (64%), Gaps = 52/1059 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+ H+ YSLLEGA+ + + +A PA+A+TD+NN+F ALEFS+ A Sbjct: 1 MTNDPRFIHLRTHTEYSLLEGAIPVKKLPGLVAGMGMPAVAVTDSNNMFCALEFSEGASK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GCQ+D+ GK P IVLL + GY L++L S YL D Sbjct: 61 AGIQPIVGCQVDV----TFATPEPGKRAEAPAP-IVLLAQSEAGYMNLMKLNSCAYL-DA 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 Q ++ L + EGLI L+GG GP+ R AE + ++ DRLY+ Sbjct: 115 DGQLPQVSLDEFAQY-HEGLICLSGGPDGPVGRLLRQGQRPKAEAIVDRLAAIYTDRLYI 173 Query: 185 NLQRHRG-----YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 LQRH G +R E V++AY LPLVATN+ F E YEAHD L+ ++ Sbjct: 174 ELQRHPGDGLPEAERLSERGHVEMAYAKGLPLVATNDVYFPKTELYEAHDALICISEGAY 233 Query: 240 VSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 V Q++ R R+TP HY+K+ EM ++F+DLPEA+ENTVEIA+RC+F PILP+F + Sbjct: 234 VDQQEARRRLTPQHYMKSPQEMATLFADLPEAIENTVEIAKRCAFKTYKRDPILPKFADD 293 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E ELR +A GL+ RLA I ++Y +RL+FEL +I M F GYFL Sbjct: 294 EV--------AELRRQAEQGLKDRLA--VIPHAAPVEEYEKRLEFELGIIEGMGFPGYFL 343 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFI+WAK IPVGPGRGSGAGS+ AYAL ITD+DPLR+SLLFERFLNP+R+SMPDF Sbjct: 344 IVADFIKWAKDEGIPVGPGRGSGAGSLVAYALLITDLDPLRYSLLFERFLNPERVSMPDF 403 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC DRR+EVIRYVQ+KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+ Sbjct: 404 DIDFCMDRREEVIRYVQDKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKM 463 Query: 479 IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + PVS++ A+AD+ R RE + VDRLL +Q++EGL R+ASTHAAG+VIGDR Sbjct: 464 IPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGDR 523 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ------ 591 PL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + Sbjct: 524 PLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVELIKKAGRPLN 583 Query: 592 ------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 G + D+ IP DD ++Y L ++ T +FQ+ESSGM AL+ M+P+C Sbjct: 584 IAADGTQLYDVLEGFEYDIGAIPLDDEKSYALYSSAKTTAVFQVESSGMMDALKRMKPNC 643 Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 IEDI+ALV+LYRPGP++NI Y KNG++ + SIHP ID +L ETQG+I+YQEQVM+IA Sbjct: 644 IEDIVALVALYRPGPMENIPTYCEVKNGQKDLESIHPSIDHILAETQGIIVYQEQVMEIA 703 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q+++GYSL AD+LRRAMGKKI EEM K++ +F +GA NG+ A +F+LL KFA+Y Sbjct: 704 QVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEAGAKANGVEPKKAREVFDLLEKFANY 763 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMP 818 GFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ I+ P Sbjct: 764 GFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGIYFQEVKKGLGIEYTP 823 Query: 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878 P VN F V D ++ Y+L A+K VG + I+E DK F +L DF R D K+++ Sbjct: 824 PCVNRSMATFDVKDQKLVYALGALKNVGVEAMKLIVEGRGDKEFVNLFDFARRCDLKRIS 883 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +R LE L AGA D +R +++ SLD + Y+ + +++ ++F G D + Sbjct: 884 KRPLEMLARAGAFDVLDPNRRRVMMSLDALTAYSAAIHDQKSSNQVSLF----GDAGDDL 939 Query: 939 TLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNN 994 + + R E + +GFY SGHPLD Y P+ RK + + V +G Sbjct: 940 QEPRLMGGEDWLPAERLAEEFKAIGFYLSGHPLDDYMGPLKRKQVLTLDDVIVRAGKGAA 999 Query: 995 I-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I ++A + +Q++K+ +G+R +V S+P +YE F Sbjct: 1000 IVKMAGTISGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1038 >gi|329850615|ref|ZP_08265460.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19] gi|328840930|gb|EGF90501.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19] Length = 1133 Score = 972 bits (2514), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/1031 (48%), Positives = 688/1031 (66%), Gaps = 30/1031 (2%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 ++V S+YSLLEGA+ ++ + PA+AITD NL+ LEFSQ +G+QPI+GC Sbjct: 1 MRVRSAYSLLEGAIKAYDMGKLAHKNGMPAVAITDRCNLYGGLEFSQSCKDSGVQPIVGC 60 Query: 74 QLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 L + G TP + +P+ V+L +G+ L +L S Y+ Sbjct: 61 ALPV--------KGIGGTPTEKWARIPTFVVLCQNEQGWLNLTKLSSIAYVDSDNMDEPH 112 Query: 131 ICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + +W Q EGL++L+G GP+D F N + L + +FGDR Y+ LQRH Sbjct: 113 V--TWDQVTAHNEGLLLLSGSYDGPVDVLFRQNRPDEGKAALKSMLDVFGDRFYIELQRH 170 Query: 190 RGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G + E+ +V+ AY +++PLVATN++ F + Y AH+ L+ ++ ST + +DR R Sbjct: 171 EGRPKGSATEAGLVEFAYQNDVPLVATNDAYFAGADMYRAHEALLCISDSTFMGIEDRRR 230 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 VT DH+ K + M +F+DL EA +NT+EIARRC+F++ PILPRF + E Sbjct: 231 VTKDHWFKPAAAMRELFADLTEACDNTIEIARRCAFLVNKRDPILPRFDTGAG----RNE 286 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + EL +A GL++RL Q +A +DY RL+ E+ VI +M F GYFLIV+DFI+W Sbjct: 287 DEELAWQAREGLKMRLKQVKLA--CPEEDYWARLEREIGVIQKMGFPGYFLIVSDFIKWG 344 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K + +PVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ+RR Sbjct: 345 KSHGVPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQERR 404 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YVQ+KYG +RVAQIITFG+LQA+A LRDVGR +Q+P QVDRLCK++PN+PA+P Sbjct: 405 EEVISYVQHKYGRDRVAQIITFGTLQARAVLRDVGRVMQLPLGQVDRLCKMVPNNPANPT 464 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L QAI + R REAR D V LL+ + KLEGLYR+ASTHAAGIVIGDRPL++LVP+Y Sbjct: 465 TLAQAIEIEPRLREARDDDEQVKNLLDTALKLEGLYRNASTHAAGIVIGDRPLTELVPLY 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT+L ++ +L +RGV ++ S++P DD Sbjct: 525 RDPRSDIPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAERYLKKRGVDINFSILPLDDT 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY LL + ++G+FQLES GMR L ++ +E+I AL+SLYRPGPIDNI Y +RK Sbjct: 585 ATYELLASGQSIGVFQLESQGMRDTLRKLRCSSLEEITALISLYRPGPIDNIDTYVDRKF 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+ +I +HP ++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK KEEMD Sbjct: 645 GRMEIDMLHPSLEPVLKETYGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKKKEEMD 704 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 QK RF++GA + G+ + + IFEL+ KFA YGFNKSHAAAYA ISYQT ++K ++PVE Sbjct: 705 LQKVRFMTGAKEKGVPEAQSDFIFELVNKFAGYGFNKSHAAAYAFISYQTGYLKANHPVE 764 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F AAS +L++ N +K+ F QDAR+F + I+PP +N DF V + + Y+L AI+ VG Sbjct: 765 FFAASFSLDIANTDKLAVFYQDARRFGVPIVPPDINRSMADFDVENGELLYALGAIRNVG 824 Query: 847 TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + +++A + F L DF R+D K +NRR +E+L AGA D +R Q++ + Sbjct: 825 FEAMQSVVQAREEGGKFTDLFDFLERIDPKAVNRRAIENLAKAGAFDSIHPNRAQIVAAA 884 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D + YAQ V R + ++F T + + L K + R + E +GFY SG Sbjct: 885 DMLIAYAQSVAAERASSQVSLFGS---TDASRPRLPKVAASAGPERLDEELAAIGFYLSG 941 Query: 966 HPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGS--RIGWVTFSE 1022 HPL + ++ I Y E+++ + G++ A +V ++Q++ GS + +VT S+ Sbjct: 942 HPLQDMLDVFKRRKITLYAEAMSLALEGHDAFRMAGIVRRRQERAAAGSGEKFAFVTLSD 1001 Query: 1023 PAKEYEANFFP 1033 P+ EYE F P Sbjct: 1002 PSGEYEVLFPP 1012 >gi|149201165|ref|ZP_01878140.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035] gi|149145498|gb|EDM33524.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035] Length = 1166 Score = 972 bits (2514), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/1057 (47%), Positives = 686/1057 (64%), Gaps = 47/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VH+ YSLLEGA+ L + A PA+A+TDTNN+F+ALEFS A Sbjct: 1 MSADPRFIHLRVHTEYSLLEGAMRLKKLPGLCVAAGMPAVAVTDTNNMFAALEFSVSAQG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ +L + K P P +VLL + GY+ L++L S +YL Sbjct: 61 AGVQPIMGCQVDLAYL-SLAPGERAKPPAP----LVLLAQSECGYENLMKLNSCLYLRGD 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + L+ L EG+I LTGG GP+ R AE + + FGDRLYV Sbjct: 116 GSLP-HVTLTELAH-HAEGVICLTGGPDGPVGRLLQGGQRPAAEALMQRLAQAFGDRLYV 173 Query: 185 NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G +R E ++++AY LPLVATN+ F + YEAHD ++ VA Sbjct: 174 ELQRHPGDGGAPEAERLTERGLIEMAYAMGLPLVATNDVYFPKSDMYEAHDAMLCVAEGA 233 Query: 239 VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q R R+TP HY K++ EM ++F+DLPEALENTVEIARRC+F PILP+F + Sbjct: 234 YVDQSAPRRRLTPQHYFKSQEEMAALFADLPEALENTVEIARRCAFGAYKRNPILPKFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ++++++ L + I +DY +RL+FEL +I M F GYF Sbjct: 294 DEVEELRRQARAGLAARLAV----------IPHAAPVEDYDKRLEFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIQYVQEKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ A+AD+ R RE + VDRLL +Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + Sbjct: 524 RPLDALVPVYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDMIRKAGRPL 583 Query: 592 -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 G + D+ IP DD ++Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 NVAADGTVLYDPPEGFEYDIGAIPLDDEKSYRLYASAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG ++ SIHP ID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGLRELESIHPSIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA +NG+ K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMENGVDKKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ ++ Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLSLPWA 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 P VN F V ++Y+L A+K VG + I ++PF +L D RVD K++ Sbjct: 824 APCVNRSEATFDVQGGVLHYALGALKNVGVEAMKLITVGRGNRPFATLYDVAQRVDLKRV 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ +S++ + Y+ + + + + ++F E G + Sbjct: 884 GKRPLEMLARAGAFDALDRNRRRVFESIEALMSYSAAIHEQKNSSQVSLFG-EAGDDLPE 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNN-I 995 L + R E + +GFY SGHPLD Y +LR+ +K +E A RG + Sbjct: 943 PRLAPVDDWLPAERLTEEFKAVGFYLSGHPLDDYMTVLRRQDVKTLDEVTAQAERGPALV 1002 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R + S+ YE F Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGGYEVTLF 1039 >gi|167646770|ref|YP_001684433.1| DNA polymerase III subunit alpha [Caulobacter sp. K31] gi|167349200|gb|ABZ71935.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31] Length = 1143 Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/1034 (48%), Positives = 685/1034 (66%), Gaps = 29/1034 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+V S+YSLLEGA+ + I AA PA + D NNLF ALE+S + G+QP Sbjct: 8 GFVHLRVRSAYSLLEGAIKADKIPGLAAAAGMPAAGLVDRNNLFGALEYSVYSKDYGVQP 67 Query: 70 IIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIGC L + + G P + P+I LLV GY L EL S YL + Sbjct: 68 IIGCALAV--------SGVGAGPTERWARTPTITLLVQNERGYLNLSELSSMAYL--ESG 117 Query: 127 QSVRICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + + W + + EGLI+L+GG+ GP+D + E L+ ++ FGDR YV Sbjct: 118 EMAEPVVPWAKVVEHAEGLILLSGGTDGPVDALLAAGKTAEGEAALVEMQRAFGDRFYVE 177 Query: 186 LQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH G R E +V AY H+ PLVATN+ + E Y+AHD L+ ++ V Q Sbjct: 178 LQRH-GLPRQAAAEPGLVHWAYEHDAPLVATNDVYYAKPELYDAHDALLCISDGAFVGQD 236 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +R RVTP+H+ K+ ++M +F+DLPEA +NT++IARRC+F++Q PILP F + Sbjct: 237 ERRRVTPEHWFKSSADMRKLFADLPEACDNTLDIARRCAFMVQKRDPILPSFPTGDG--- 293 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E EL ++A GL RL +A + Y RLDFEL++I +M F GYFLIV+DF Sbjct: 294 -RSEPEELTHQAKEGLRKRLDGLELA--VDEKVYWDRLDFELSIIIKMGFPGYFLIVSDF 350 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK++ IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFDIDFC Sbjct: 351 IKWAKEHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFC 410 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RR+EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P VDRLCK++PN+P Sbjct: 411 QERREEVIVYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNP 470 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A PV+L QAI + R ++AR D +V L+++ +LEGL+R+ASTHAAG+VIGDRPL+QL Sbjct: 471 AAPVTLAQAIEIEPRLKQARDEDGNVKACLDVALQLEGLFRNASTHAAGVVIGDRPLTQL 530 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 P+Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++ L +RG +DLS +P Sbjct: 531 TPLYKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGEIIDLSRLP 590 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 FDD +TY LL + T+G+FQLES GMR L M+ IE+I AL+SLYRPGP+DNI + Sbjct: 591 FDDTKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFV 650 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 + K ++ + +HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK K Sbjct: 651 DCKFDRKPVDYLHPSLEVVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKK 710 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEMD QK RF++GA + + + + +IFEL+AKFA YGFNKSHAAAYA+I+YQTAW+K + Sbjct: 711 EEMDLQKIRFVAGAKEKDVPEAQSGSIFELVAKFAGYGFNKSHAAAYALIAYQTAWLKAN 770 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 PVEFLAASM+L++ N +K+ F QDAR+F+I + PP VN DF+V + + Y+L A+ Sbjct: 771 TPVEFLAASMSLDLSNTDKLAVFHQDARRFDIVVRPPDVNRSGADFEVENGEVLYALGAV 830 Query: 843 KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 + VG +H++ + PF + DF RVD K +N+R +E+L AGA D +R Q+ Sbjct: 831 RNVGLEAMKHLVAIREEGGPFRDIFDFVERVDPKLVNKRAIENLARAGAFDSLSKNRAQI 890 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 S D + + Q + +R +F + + + L+K + + E +GF Sbjct: 891 FASADVLIAHGQSIAADRQGGQHALFGGDPA--AGRPRLKKTEPWSQVDLLDEELAAVGF 948 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGSRIGWVT 1019 Y +GHPLD +LR+ E + R+ +V +Q++ ++ G R +V+ Sbjct: 949 YLTGHPLDDMVGVLRRRRTHMLTEVIPRAEAGMEAFRMCGVVRRRQERASQSGERFAFVS 1008 Query: 1020 FSEPAKEYEANFFP 1033 S+P+ EYE F P Sbjct: 1009 LSDPSGEYEVLFPP 1022 >gi|254488409|ref|ZP_05101614.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter sp. GAI101] gi|214045278|gb|EEB85916.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter sp. GAI101] Length = 1177 Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/1068 (46%), Positives = 692/1068 (64%), Gaps = 58/1068 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+ HS YSLLEGAL L + D + PA+A+TDTNN+F+ALEFS Sbjct: 1 MAHTPRFIHLRTHSEYSLLEGALRLKKLPDLCKSAGMPAMALTDTNNMFAALEFSIAMSG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D+ G+ P P +VLL + GY+ L++L S +Y+ D+ Sbjct: 61 AGVQPIIGCQVDL----AYVQAQPGEKPRLPAP-VVLLAQSEPGYENLMKLNSCLYI-DK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + L L+ + + G+I LTGG+ GP+ + + AE + FGDRLYV Sbjct: 115 GGALPEVTLDQLESL-SAGIICLTGGAGGPVGQLLQTGQAPAAEALMKRLHGAFGDRLYV 173 Query: 185 NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G +R E V++AY +PLVATN+ F YEAHD L+ +A Sbjct: 174 ELQRHPGENGQPEAERLTERGFVEMAYAMGIPLVATNDVYFPKTSMYEAHDALICIADGA 233 Query: 239 VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q+ DR R+T HY K++SEMV++F+DLPEA++NTVEIA+RC+F+ PILP+F + Sbjct: 234 YVDQQQDRRRLTAQHYFKSQSEMVTLFADLPEAIDNTVEIAKRCAFMAYRRDPILPKFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ++++++ L+N+ L+V I +DY +RLDFEL +I M F GYF Sbjct: 294 DEIEELKRQAHEGLKNR----LKV------IPHATSVEDYEKRLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ A+AD+ R R+ + V RLL+ Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLRDEARNEEVVARLLDYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD--------- 587 RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D Sbjct: 524 RPLDRLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583 Query: 588 ---------FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 F G+ D++ IP DD +Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 HIAADGTELFAPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG ++ S+HP ID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGIKERESVHPSIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA NG+ K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R+ + + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVD 873 PP VN FKV + + Y+L A+K VG + I + D+PF +L D RVD Sbjct: 824 PPCVNRSDAMFKVVEGALVYALGALKNVGVEAMKLITQGRKIEGVDRPFATLFDLARRVD 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 K++ +R LE L +GA D +R ++ +LD + Y+ + + + + ++F Sbjct: 884 LKRVGKRPLEMLARSGAFDQLDNNRRRVWNALDGLVSYSAAIHEQKASNQVSLFGEAGDD 943 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKG--------YE 984 + L E ++ R E + +GFY SGHPLD Y P+ RK G Sbjct: 944 LPEPRILPCDDWE-AAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSASGGVPFLTLDELT 1002 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E V+ N RLA +V +Q++K+ +G+R + S+P YE F Sbjct: 1003 EKVSIKGAMNARLAGVVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050 >gi|84514324|ref|ZP_01001688.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53] gi|84511375|gb|EAQ07828.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53] Length = 1188 Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/1082 (46%), Positives = 688/1082 (63%), Gaps = 75/1082 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP F+HL+ H+ YSLLEGA+ + ++ A PA+A+TDTNN+F ALEFS+ A Sbjct: 1 MTDSPRFIHLRTHTEYSLLEGAVPVKSLAPLAAGMGMPAVAVTDTNNMFCALEFSEYAVK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQLD+ + GK P P P IVLL GY L++L S YL D Sbjct: 61 AGVQPIIGCQLDL----AYATPDPGKRPEPPAP-IVLLAQNEAGYLNLMKLNSCAYL-DA 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + ++ + L + GT GLI LTGG GPI R A+ L ++ RLYV Sbjct: 115 AGELPQVTVDELAQYGT-GLICLTGGPDGPIGRLLRHGQQAKADLLLDQLAAIYPQRLYV 173 Query: 185 NLQRHR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH +R E +++AY LPLVATN+ F YEAHD L+ +A Sbjct: 174 ELQRHPVDGGLPEAERLSERGHIEMAYAKGLPLVATNDVYFPKSAFYEAHDALICIADGA 233 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q++ R R+TP HY K+ EM ++F+DLPEALENT+EIA+RC+F APILP+F + Sbjct: 234 YVDQQEPRRRLTPQHYFKSPREMATLFADLPEALENTIEIAQRCAFKAYKRAPILPKFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ELR +A GL RLA I +DY +RLDFEL +I M F GYF Sbjct: 294 DEV--------AELRRQAQEGLRARLA--VIPHAASIEDYEKRLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK N IPVGPGRGSGAGS+ AYAL ITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDNGIPVGPGRGSGAGSLVAYALLITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ+KYG +RV QIITFG+L +KAA+RDVGR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIRYVQDKYGRDRVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ A+AD+ R RE + V RLL +Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLREEAKNEEVVQRLLTYAQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593 RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++ +++ + + G Sbjct: 524 RPLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIHNAVELIRKAGRSL 583 Query: 594 ---------------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 + D+ IP DD ++Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 NVTADGDVLYQPPVGFEYDIGAIPLDDAKSYALYASAKTIAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG +++ SIHP ID +L ETQG+I+YQEQVM+I Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGIKELESIHPSIDHILAETQGIIVYQEQVMEI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F +GA NG+ A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEAGAKANGVEPKKAREVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ I + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGVYFQEVKKGLGIDYI 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM----------------------E 855 PP VN F+V D ++ Y+L A+K VG + I+ Sbjct: 824 PPCVNRSGATFEVQDGKLVYALGALKNVGVEAMKLIVAGREGHPGLDPGPHSAGGPGSAS 883 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915 + KPF +L DF R D K++ +R LE L AGA D +R +++ SLD + Y+ + Sbjct: 884 GATPKPFVNLFDFARRCDLKRIGKRSLEMLARAGAFDVLDRNRRRVMASLDALTAYSAAI 943 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVYK 972 +++ ++F G + + + + + + R E + +GFY SGHPLD Y Sbjct: 944 HDQKSSNQVSLF----GDAGEDLPEPRLAFGDDWLPAERLAEEFKAIGFYLSGHPLDDYM 999 Query: 973 PILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 L++ + +E +A +++A V +Q++K+ +G+R +V S+P +YE Sbjct: 1000 GALKRKQVLTLDEVIARAEKGAALVKMAGTVSGRQERKSARGNRFAFVQLSDPTGQYEVT 1059 Query: 1031 FF 1032 F Sbjct: 1060 MF 1061 >gi|295689601|ref|YP_003593294.1| DNA polymerase III subunit alpha [Caulobacter segnis ATCC 21756] gi|295431504|gb|ADG10676.1| DNA polymerase III, alpha subunit [Caulobacter segnis ATCC 21756] Length = 1143 Score = 970 bits (2508), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/1031 (48%), Positives = 686/1031 (66%), Gaps = 23/1031 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+V S+YSLLEGA+ + I AA PA + D NLF ALE+S A AG+QP Sbjct: 8 GFVHLRVRSAYSLLEGAIKADQIGKLAAAAGMPAAGLADRANLFGALEYSSYAKDAGVQP 67 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC L + + + + P+++LL +GY L EL S YL + Sbjct: 68 IIGCALPV-----VGIGGGPTERWARAPTVMLLAQNEQGYLNLSELSSIAYL--DSAELP 120 Query: 130 RICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + W + + ++GLI+L+GG+ GP+D F + A L ++FGDR YV LQR Sbjct: 121 EPVVPWAKVVEYSDGLILLSGGTDGPVDALFAAGKAAEASAALAEMHRVFGDRFYVELQR 180 Query: 189 HRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G + E +V AY +++PLVATN+ F + YEAHD L+ +A V Q +R Sbjct: 181 H-GLPKQAAAEPGLVNWAYENDVPLVATNDVYFAKSQFYEAHDALLCIADGAFVGQDERR 239 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 RVT +H+ K ++M +F+DLPEA +NT++IARRC+F++ APILP F + + Sbjct: 240 RVTSEHWFKPPADMRKLFADLPEACDNTLDIARRCAFMVHKRAPILPSFPTGDG----RN 295 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E ELR++A GL++RL + ++Y +RL+FEL++I +M F GYFLIV+DFI+W Sbjct: 296 EAEELRHQAREGLKMRL--DGLTLSAPEEEYWKRLEFELDIIEKMGFPGYFLIVSDFIKW 353 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 K + IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQ+R Sbjct: 354 GKAHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQER 413 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P VDRLCK++PN+PA P Sbjct: 414 REEVISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAP 473 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L QAI + R R+AR D +V L ++ +LEGL+R+ASTHAAG+VIGDRPL+QL P+ Sbjct: 474 VTLAQAIDIEPRLRQARDEDANVANCLNVALQLEGLFRNASTHAAGVVIGDRPLTQLTPL 533 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++ L +RG ++DL +PFDD Sbjct: 534 YKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGFEIDLGKLPFDD 593 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY LL + T+G+FQLES GMR L M+ IE+I AL+SLYRPGP+DNI + + K Sbjct: 594 TKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVDCK 653 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G++ + ++HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KEEM Sbjct: 654 FGRKPVDTLHPSLEGVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEEM 713 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D QK RF+SGA + + + + +IFEL+AKFA YGFNKSHAAAYA ISYQTAW+K + PV Sbjct: 714 DLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLKANTPV 773 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF AASM+L++ N +K+ F QDAR+F I + P VN DF+V + + Y+L AI+ V Sbjct: 774 EFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEVENGEVLYALGAIRNV 833 Query: 846 GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G +H++ + PF + DF R+D +++N+R +E+L AGA D F +R Q++ S Sbjct: 834 GLDAMKHLVAVREEGGPFRDIFDFVERIDPRQVNKRAIENLARAGAFDSFHKNRAQIVAS 893 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 D + +AQ +R +F + G + + L K N + E +GFY + Sbjct: 894 ADVLIAHAQSCHADRQGGQGGLFGSDPG--AGRPRLAKTENWNQVDLLDEELSAVGFYLT 951 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 GHPL+ +LR+ E++ R+ MV +Q++ ++ G + +V+ S+ Sbjct: 952 GHPLEDMVGMLRRRRTAMLAEAMVQAEAGMEAFRMCGMVRRRQERASQSGEKFAFVSLSD 1011 Query: 1023 PAKEYEANFFP 1033 P EYE F P Sbjct: 1012 PTGEYEVLFPP 1022 >gi|163744574|ref|ZP_02151934.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45] gi|161381392|gb|EDQ05801.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45] Length = 1161 Score = 968 bits (2503), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/1052 (48%), Positives = 681/1052 (64%), Gaps = 59/1052 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +LEGAL L + PA+A+TD+NN+F+ALEFS AG+QPIIGCQ+D+ + Sbjct: 1 MLEGALRLKKLPGMCRDAGMPALALTDSNNMFAALEFSVAMAGAGVQPIIGCQVDVAYVE 60 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 G+ P P P +VLL + GY+ L++L S +YL D+G + L L+ + Sbjct: 61 ----VQPGEKPRPPAP-VVLLAQSELGYENLMKLNSCLYL-DKGGAVAEVTLDELEALSA 114 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR------GYDRY 195 + +I LTGG GP+ AE + K FGDRLYV LQRH +R Sbjct: 115 D-IICLTGGPMGPVGMLLQGGQRPAAETLMARLKAAFGDRLYVELQRHPVDGGQPEPERL 173 Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYL 254 E V++AY ++PLVATN+ F + YEAHD L+ ++ V Q+ R R+T HY Sbjct: 174 TERGFVEMAYAMDIPLVATNDVYFPKPDMYEAHDALICISEGAYVDQQQPRRRLTAQHYF 233 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314 K+++EM ++F+DLPEAL NTVEIA+RC+F+ PILP+F + E ELR Sbjct: 234 KSQAEMATLFADLPEALSNTVEIAKRCAFMAYRRDPILPKFADDEV--------AELRRM 285 Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374 A GL+ RLA I +DY++RLDFEL +I M F GYFLIVADFIQWAK NNIPV Sbjct: 286 ANEGLKARLA--VIPHAVSVEDYQKRLDFELGIIEGMGFPGYFLIVADFIQWAKDNNIPV 343 Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434 GPGRGSGAGS+ AYALT+TD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYV Sbjct: 344 GPGRGSGAGSLVAYALTVTDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV 403 Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIA 493 Q KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP + PVS++ A+A Sbjct: 404 QEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALA 463 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 D+ R RE + V RLL Q++EGL R+ASTHAAG+VIGDRPL QLVP+Y+D RSD+ Sbjct: 464 DEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGDRPLDQLVPLYQDPRSDM 523 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD---------FLAQRGVKV-------- 596 P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +A G ++ Sbjct: 524 PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKAGGRHLHIAADGTEIYQPPEGHI 583 Query: 597 -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 D++ IP DD TY L ++ T+ +FQ+ESSGM AL+ M+P CIEDI+ALV+LYRPGP+ Sbjct: 584 DDIATIPLDDKATYKLYSSAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM 643 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +NI Y KNG+ ++ S+HP ID +L+ETQG+I+YQEQVMQIAQ+++GYSL AD+LRR Sbjct: 644 ENIPTYCEVKNGQRELESVHPSIDYILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKKI EEM K++ +F GA NG+ K A +F+LL KFA+YGFNKSHAAAYAV+SYQ Sbjct: 704 AMGKKIAEEMAKERPKFEKGAMANGVDKKKAAEVFDLLEKFANYGFNKSHAAAYAVVSYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNR 834 TAW+K ++PVEF+A M ++ +K+ + ++ R+ + +PP VN FKV D Sbjct: 764 TAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWVPPCVNRSDASFKVVDGA 823 Query: 835 IYYSLAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + Y+L A+K VG R + E DKPF +L D RVD K++ +R LE LV +GA Sbjct: 824 LVYALGALKNVGLEAMRLVTEGRKVEGVDKPFATLYDLARRVDLKRVGKRPLEMLVRSGA 883 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 D +R ++ QSLD + Y+ + + + + ++F E G + + S+ Sbjct: 884 FDQLDSNRRRVFQSLDGLVSYSAAIHEQKASNQVSLFG-EAGDDLPEPRMLPCDDWQSAE 942 Query: 951 RFENEQRVLGFYFSGHPLDVYK-PILRK---------MGIKGYEESVATIRGNNIRLAAM 1000 R E + +GFY SGHPLD Y P+ RK + + E V+T N RLA + Sbjct: 943 RLAEEFKAVGFYLSGHPLDDYMVPLRRKWARETGLPFLTLDELTEKVSTRGAMNARLAGV 1002 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V +Q++K+ +G+R + S+ YE F Sbjct: 1003 VAGRQERKSARGNRFAFAQLSDTTGGYEVTLF 1034 >gi|119384499|ref|YP_915555.1| DNA polymerase III subunit alpha [Paracoccus denitrificans PD1222] gi|119374266|gb|ABL69859.1| DNA polymerase III, alpha subunit [Paracoccus denitrificans PD1222] Length = 1156 Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/1056 (47%), Positives = 680/1056 (64%), Gaps = 58/1056 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 E SP F+HL+ HS +SLLEGA+ + + D A + PA+A+TD+N LF+ALEFS KA A Sbjct: 3 ENSPRFIHLRTHSEHSLLEGAVPVKKLADLAAQNGMPAVALTDSNALFAALEFSVKAQDA 62 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G+QPIIGCQ+ + + P +VLL G+ L+EL + +YL D Sbjct: 63 GVQPIIGCQV--------TLAAEATGP------VVLLAQNEAGWLNLMELSTCLYLRDD- 107 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 ++ EGLI LTGG+ GP+ + A F RLYV Sbjct: 108 -HALPHVTPEELAAHAEGLICLTGGAGGPLGQLVLQGRQAEARALAERLAAAFPTRLYVE 166 Query: 186 LQRHRGYDRY-------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH + E ++ +AY +LPLVATN+ F E ++AHD L+ ++ Sbjct: 167 LQRHHDAEGQPVPEETGSEGGMIDIAYALDLPLVATNDVYFPKPELFDAHDALICISERA 226 Query: 239 VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q R R+TP HY K+ +EM ++F+DLPEA+ NTVEIARRC+F ++ H PILPRF + Sbjct: 227 YVDQTAPRRRLTPQHYFKSAAEMATLFADLPEAIRNTVEIARRCAFAVKKHKPILPRFAD 286 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E + ELR +A GL RLA I ++Y +RL FEL +I +M F GYF Sbjct: 287 DEVE--------ELRRQAWDGLRARLA--VIPHSATVEEYEERLRFELGIIEQMGFPGYF 336 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK++NIPVGPGRGSGAGS+ AYALTITD+DP+R+SLLFERFLNP+R+SMPD Sbjct: 337 LIVADFIKWAKEHNIPVGPGRGSGAGSLVAYALTITDLDPIRYSLLFERFLNPERVSMPD 396 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+P+ QVDRL K Sbjct: 397 FDIDFCMDRREEVIQYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQLPFGQVDRLSK 456 Query: 478 LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS+ +A+AD+ R REA + V+RLL+ + K+EGL R+ASTHAAG+VIGD Sbjct: 457 MIPVEGVKPVSVTKALADEPRLREAAREE-VVNRLLDYAAKIEGLLRNASTHAAGVVIGD 515 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------- 589 RPL +LVP+YRD SD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Sbjct: 516 RPLHRLVPLYRDPASDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLINDGGRPL 575 Query: 590 -----------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 +G + ++ IP DD +Y L + T+ +FQ+ESSGM AL M+P Sbjct: 576 HVAADGRQLYEPAKGAENQINAIPLDDKPSYDLFASARTVAVFQVESSGMMDALRRMKPT 635 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG + SIHP ID +L ETQG+I+YQEQVMQI Sbjct: 636 CIEDIVALVALYRPGPMENIPTYCEVKNGLRPLESIHPSIDDILAETQGIIVYQEQVMQI 695 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F+ G GI A +F+LL KFA+ Sbjct: 696 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFVEGCKAQGIDTKKAGEVFDLLEKFAN 755 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M ++ +K+ + ++A + I+ +P Sbjct: 756 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREADRMGIETVP 815 Query: 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878 P VN F V D +I Y+L A+KGVG I++A A +PF + DF RVD +++ Sbjct: 816 PCVNRSEALFSVKDGKILYALGALKGVGVEAMNLIVQARAGRPFADMHDFARRVDMRRVG 875 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +R LE L AGA D +R ++L+SLD + ++ V++ + ++F G Sbjct: 876 KRPLEMLARAGAFDALEPNRARVLKSLDGLVAWSTAVQEAAASSQSSLFG--GGEDLPPP 933 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-R 996 V + + E +GFY SGHPLD Y+P LR+ G++ E + A G + + Sbjct: 934 RPVAAPVWMPAEKLAEEHAAVGFYLSGHPLDDYQPALRRKGVQTLAEVTQAAADGALVAQ 993 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 LA V +Q+KK+ +G+R +V S+P YE F Sbjct: 994 LAGTVAHRQEKKSARGTRFAFVGLSDPTGLYEVTVF 1029 >gi|83592917|ref|YP_426669.1| DNA polymerase III subunit alpha [Rhodospirillum rubrum ATCC 11170] gi|83575831|gb|ABC22382.1| DNA polymerase III, alpha subunit [Rhodospirillum rubrum ATCC 11170] Length = 1170 Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/1043 (47%), Positives = 687/1043 (65%), Gaps = 30/1043 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+VH++ S+ EGA+ + ++ A PA+AITD+ NLF ALE S AC G+QP Sbjct: 19 GFVHLRVHTALSMSEGAIQVKALVKLCAKMGMPAVAITDSGNLFGALELSVTACDMGVQP 78 Query: 70 IIGCQLDIDMQDNLKMTNQG-------KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 IIGCQ+ + N ++ +G + P P ++VLL A GY L+++VSR ++ Sbjct: 79 IIGCQIAVR---NEEVRERGFGAGRDLRAPDPD--AVVLLAKNASGYANLMKIVSRSFIE 133 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 G ++ ++ L+ ++ + +GLI+LTGG GP+ R A L K+ FGDR+ Sbjct: 134 GDGSEAPQVRLADIEAL-NDGLILLTGGVGGPLGRLLREGRRDEAAAILARHKEHFGDRV 192 Query: 183 YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 YV +QRH D R E+ ++ LAY + LVATN + +EAHDVL+ + TV+ Sbjct: 193 YVEIQRHGMADEDRIEADLIDLAYAQNVALVATNEPYYPDRAMFEAHDVLICMQQKTVIG 252 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R R+TP+HY K +EM ++F+DLPEA++NT+ IA+RC+ + + PILP + Sbjct: 253 DETRRRLTPEHYFKPANEMRALFADLPEAVDNTLVIAKRCAVMSEKRKPILPHSPAVK-- 310 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYH-------AQDYRQRLDFELNVIARMKFS 354 + E L A GL+ RL + +G A+ YR+RL +EL+VI +M F Sbjct: 311 --GRTEAEALCAMAEEGLDKRLEKHVYREGMSEAERIEIAKPYRERLAYELDVIIKMGFP 368 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIVADFIQWAK +IPVGPGRGSGAGS A+ALTITD+DPLRFSLLFERFLNP+R+S Sbjct: 369 GYFLIVADFIQWAKDADIPVGPGRGSGAGSCVAWALTITDLDPLRFSLLFERFLNPERVS 428 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFCQDRR+EVIRYVQ +YG+ERVAQIITFG LQA+A LR VGR LQMP VD+ Sbjct: 429 MPDFDIDFCQDRREEVIRYVQREYGYERVAQIITFGKLQARAVLRSVGRVLQMPLGYVDK 488 Query: 475 LCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 +CK++PN+PA PV+L +AI + + R+ + D V RLL+I KLEGLY HASTHAAG+V Sbjct: 489 ICKMVPNNPAAPVTLKEAIEAEPQLRDLQKNDEMVARLLDIGMKLEGLYSHASTHAAGVV 548 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 IGDRPL LV +YRD SD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A+RG Sbjct: 549 IGDRPLDNLVALYRDPHSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQHAVRHIAKRG 608 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + VDL +P DD +Y +L T G+FQLES+GMR L M+PD +EDI+A+V+LYRPG Sbjct: 609 ITVDLLDLPLDDRRSYDMLGRGETSGVFQLESTGMRDVLRNMKPDTLEDIVAIVALYRPG 668 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+DNI Y RK G+E++V +H ++P+LKET G++IYQEQVMQ AQ+++GYSL AD+L Sbjct: 669 PMDNIPSYIKRKKGEEEVVYLHDSLEPILKETYGILIYQEQVMQAAQIMAGYSLGGADLL 728 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKKIK EMD Q+ F+ GA K G S+ A +F+ +AKFA YGFNKSHAAAY +++ Sbjct: 729 RRAMGKKIKAEMDTQRALFVEGAGKRGTSEAKASEVFDQIAKFAGYGFNKSHAAAYGLVA 788 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K +YPVEF+AA+MT +M N +K+ F + R+ +I ++PP VN F V D Sbjct: 789 YQTAYLKANYPVEFMAATMTYDMHNTDKLAVFKGELRRLDIPLLPPDVNRSFAVFGVEDG 848 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 + Y+L A+K VG ++ E A PF L DF R+D K +N+R+LE+L+ AGALD Sbjct: 849 AVRYALGAVKNVGAAAMDALVAEREARGPFKDLADFARRLDGKVINKRLLENLIKAGALD 908 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 R +LL + D + ++AQ ++R + ++F T + + + Sbjct: 909 SLDGDRAKLLANADVLMRHAQAAAEDRASNQSSLFGGAGATSEPPMKFRACAAWTITETL 968 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKT 1009 +E+ +GFY S HPLD+Y L ++ + E +RG ++LA +++++ Sbjct: 969 AHERDAMGFYLSAHPLDIYGDSLERLDVVPIEMLPGHLRGGGSGAVKLAVTPGARKERIG 1028 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 + GSR +V S+ E F Sbjct: 1029 KSGSRYAFVELSDATGSCETMVF 1051 >gi|159045497|ref|YP_001534291.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12] gi|157913257|gb|ABV94690.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12] Length = 1164 Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/1053 (47%), Positives = 686/1053 (65%), Gaps = 43/1053 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL++H+ YSLLEGA+ L + D +AA + PAIAITDTNN+F+ALE S+ Sbjct: 1 MTQPPRFIHLRLHTEYSLLEGAMRLKKLPDLVAAAEMPAIAITDTNNMFAALEASEALSK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPIIGCQ+D+ D + + P P +VLL T GY+ L+ L + +Y+ D+ Sbjct: 61 AGIQPIIGCQVDVAF-DPAAPGERPRAPAP----VVLLAQTEAGYENLMALNTCLYV-DK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q +I + L G++ LI LTGG GP+ R A+ + ++FGDRLYV Sbjct: 115 GGQLPQITVEELAANGSD-LICLTGGPRGPLGRFLSAGQRPKAQALMARLAEIFGDRLYV 173 Query: 185 NLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 L RH G E++ + LAY LPLVATN+ F YEAHD L+ +A V Q Sbjct: 174 ELHRHPGDPLCAETEPGFLDLAYDMNLPLVATNDVYFPDPGMYEAHDALICIAEGAYVDQ 233 Query: 243 K-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R R+T HY K+++EM ++F+DLPEALENT+EIARRC+F PILPRF E E + Sbjct: 234 QAPRRRLTDQHYFKSQTEMATLFADLPEALENTIEIARRCAFKAFKRDPILPRFAEDEVE 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ELR ++ GL+ RLA I ++Y +RL+FEL++I M F GYFLIVA Sbjct: 294 --------ELRRQSREGLKARLA--VIPHAAPVEEYEKRLEFELDIIEGMGFPGYFLIVA 343 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID Sbjct: 344 DFIKWAKDRGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPDFDID 403 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRR+EVI YVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+IP Sbjct: 404 FCMDRREEVIHYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPV 463 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + PVS++ A+ D+ R E A+ V+RLL+ ++EGL R+ASTHAAG+VIGDRPL Sbjct: 464 EGVKPVSIEKALKDEPRLAEEAKAEEVVERLLKYGMQVEGLLRNASTHAAGVVIGDRPLD 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----------- 589 +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++ + Sbjct: 524 KLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAVKLIRATGRDLHVAA 583 Query: 590 -------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 G + D++ IP DD +Y L + T+ +FQ+ES+GM AL M+P CIED Sbjct: 584 DGTELYSPAPGTENDINAIPLDDEASYKLYASAKTVAVFQVESTGMMDALRRMKPTCIED 643 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIALV+LYRPGP++NI Y KNG + +HP +D +L ETQG+I+YQEQVMQIAQ + Sbjct: 644 IIALVALYRPGPMENIPKYCEVKNGLSERDLLHPTVDHILDETQGIIVYQEQVMQIAQEM 703 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GYSL AD+LRRAMGKKI+E MD ++ +F++GA++NG+ K A+ ++ LL KFA+YGFN Sbjct: 704 AGYSLGGADMLRRAMGKKIQEAMDAERPKFLAGAAENGVDKDKALEVWHLLDKFANYGFN 763 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821 KSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R+ ++I+PP V Sbjct: 764 KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYAEEVRRGLGLEIVPPCV 823 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881 N F V + ++ Y L A+K VG ++ DKPF +L D RVD K++ +R Sbjct: 824 NRSRASFSVAEGKLVYGLGALKNVGADAMELVVTGRGDKPFATLFDLARRVDLKRVGKRP 883 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 LE L AGA D +R ++ QSLD + Y+ + + R + ++F E G + + Sbjct: 884 LEMLARAGAFDQLDPNRRRVFQSLDGLVAYSAAIHEQRASAQVSLFG-EAGEDLPEPRIL 942 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAA 999 + R E + +GFY SGHPLD Y L++ G+ E + ++A Sbjct: 943 PCDDWLPAERLAEEHKAIGFYLSGHPLDDYMGALKRKGVVTLEALARKVETGAAVAKIAG 1002 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +Q++K+ +G+R +V S+P YE F Sbjct: 1003 TIAGRQERKSARGNRFAFVQASDPTGLYEVTVF 1035 >gi|82946509|dbj|BAE51373.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1] Length = 1118 Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/1010 (48%), Positives = 675/1010 (66%), Gaps = 31/1010 (3%) Query: 42 PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101 PA+ ITDT NLF ALEFS AGIQPI+G Q+ I +D + G+ P P ++VL Sbjct: 2 PAVGITDTANLFGALEFSTSCSDAGIQPIVGAQIAIRREDG-GPSKDGRKPEPD--TLVL 58 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 L GY L++LVS+ +L ++ ++ L L E ++GLI+LTGG +GP+ R Sbjct: 59 LCQNEAGYLNLLKLVSKAFLETDAGETPQVTLHDL-ETRSDGLIVLTGGPAGPVGRLLAD 117 Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFL 220 ++ AE L + F R YV L RH R E +V LAY H+LPLVATN + F Sbjct: 118 GQTEKAEIVLARLARAFAGRCYVELMRHNLEVEDRIEPLLVSLAYKHDLPLVATNEAFFA 177 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 YEAHD L+ +A +SQ +R R+TP+HY K+ EM ++F+DLPEA +NT+ IARR Sbjct: 178 DRGMYEAHDALVCIAEGAYISQDERRRLTPEHYFKSPEEMRALFADLPEACDNTLVIARR 237 Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG-------YH 333 C+F + PILP + D + + E LR K GLE RL + +G + Sbjct: 238 CAFGVAKRKPILPPY---RMDGLTEAEV--LRKKTWEGLEARLEKHVFKEGMTDDEKEHA 292 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 A+ YR+R++FELNVI M F GYFLIV+DFIQW+K IPVGPGRGSGAGS A+ALTIT Sbjct: 293 AKPYRERIEFELNVIEEMGFPGYFLIVSDFIQWSKAQEIPVGPGRGSGAGSAVAWALTIT 352 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 D+DPLR+ LLFERFLNP+R+SMPDFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG LQ Sbjct: 353 DLDPLRWGLLFERFLNPERVSMPDFDIDFCQDRREETIRYVQGKYGYSQVAQIITFGKLQ 412 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLL 512 A+A LRDVGR LQMPY QVDR+CKL+PN+PA+P++L QA+ + +E + D +V L+ Sbjct: 413 ARAVLRDVGRVLQMPYGQVDRICKLVPNNPANPMTLEQALESEPLLKEQKERDEAVSHLI 472 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 +++ KLEGLYRHASTHAAG+VIGDRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KFD Sbjct: 473 DLAMKLEGLYRHASTHAAGVVIGDRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKFD 532 Query: 573 FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ ++ + + +G+ +DLS IP DD ++Y LL+ G+FQLESSGMR Sbjct: 533 FLGLKTLTVMVTAVKHVKKTKGIDIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRDV 592 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 L M P+ +ED+IA+V+LYRPGP+D I Y K+GKE+ +HPL++P+LKET G+++Y Sbjct: 593 LRKMGPNRLEDLIAVVALYRPGPMDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMVY 652 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQIAQ+LSGYSL AD+LRRAMGKK +EEMD+Q+ +F+ GA+ + A IF+ Sbjct: 653 QEQVMQIAQVLSGYSLGGADLLRRAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIFD 712 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +AKFA+YGFNKSHAAAYA+I+YQTAW+K +YP EF+AA+MT EM N +K+ F Q+ + Sbjct: 713 KVAKFAEYGFNKSHAAAYALIAYQTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELDR 772 Query: 812 FNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSL 865 I+++PP +N F V G + + Y+LAA+K VG + ++ E F + Sbjct: 773 LGIKLLPPDINASQPTFSVEVLPDGGSAVRYALAALKNVGEAAMKSLVDERERGGRFKDV 832 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF +R+DSK LNRR LE++V AG D +R +L ++ D + +YA ++R + + Sbjct: 833 GDFAARMDSKVLNRRQLENMVKAGVFDSLDKNRGRLFKNADTLCRYAASAAEDRDSSQMS 892 Query: 926 IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 + G+ + + LE + + E +GFY S HPLD Y ++++ + E Sbjct: 893 LLG---GSNAPTLKLESGPDWSPHEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIAE 949 Query: 986 SVATIRGNN---IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ +RLA ++SKQ++ + KGSR ++ FS+ + +E F Sbjct: 950 LPRHLQSGGKGRVRLAGSLLSKQERVSAKGSRYAFLQFSDASGMFEVTCF 999 >gi|255262260|ref|ZP_05341602.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62] gi|255104595|gb|EET47269.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62] Length = 1169 Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/1055 (47%), Positives = 686/1055 (65%), Gaps = 51/1055 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL++H+ YSLLEGA+ + + PA+A+TDTNN+F ALEFS+ A +GIQPI Sbjct: 6 FIHLRLHTEYSLLEGAIPVKKLPQMCINADMPAVAVTDTNNMFCALEFSEGAAKSGIQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGCQ+D+ QG+ P P +VLL GY L++L S Y+ D G + Sbjct: 66 IGCQIDL----TYDQAEQGQREKPPAP-LVLLAQNETGYANLMKLNSCEYI-DAGGALPQ 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L L++ ++GLI L+GG +GP+ + A+ + + +RLYV LQRH Sbjct: 120 VSLEELEQY-SDGLICLSGGPNGPVGQFLQQGQGPKAQALMTRLAATYPNRLYVELQRHP 178 Query: 191 G------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 G ++ E+ ++ +AY LPLVATN+ F E YEAHD L+ +A V Q++ Sbjct: 179 GDGGLPDNEQRTETALIDMAYAMGLPLVATNDVYFPKPEIYEAHDALICIAEGAYVDQQE 238 Query: 245 -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R+TP HY K+ EM+++F+DLPEA+ENT+EIARRC+F PILP+F + E + Sbjct: 239 PRRRLTPQHYFKSPQEMITLFADLPEAVENTIEIARRCAFKAYKRDPILPKFADDEVE-- 296 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ELR +A AGL+ RLA I ++Y +RLDFEL++I M F GYFLIVADF Sbjct: 297 ------ELRRQAHAGLKDRLA--VIPHAVTVEEYEKRLDFELDIIEGMGFPGYFLIVADF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K N IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC Sbjct: 349 IKWSKDNAIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVD L K+IP + Sbjct: 409 MDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDSLSKMIPVEG 468 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 PVS+ +A+AD+ R REA + VDRLL Q++EGL R+ASTHAAG+VIGDRPL L Sbjct: 469 VKPVSIVKALADEPRLREAAQNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDAL 528 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----------- 591 VP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + Sbjct: 529 VPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSNRSIHVAADG 588 Query: 592 -------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 G + D++ IP DD +Y L + T+ +FQ+ES+GM AL M+PDCIEDII Sbjct: 589 AELYTPANGTENDINAIPLDDDASYKLYASAKTVAVFQVESTGMMDALRRMKPDCIEDII 648 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ALV+LYRPGP++NI + KNG +HP ID +L ETQG+I+YQEQVMQIAQ ++ Sbjct: 649 ALVALYRPGPMENIPKFCEVKNGLSDRDLLHPTIDHILDETQGIIVYQEQVMQIAQEMAN 708 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKKI+E MD +K +F+SG+ +NG+ + A +++LL KFA+YGFNKS Sbjct: 709 YSLGGADLLRRAMGKKIQEAMDAEKPKFLSGSKENGVDEKKAKEVWDLLDKFANYGFNKS 768 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNT 823 HAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ + PP VN Sbjct: 769 HAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPYSPPCVNR 828 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHI----MEASADKPFDSLEDFCSRVDSKKLNR 879 F V D + Y+L A+K VG R + M ADKPF ++ D RVD K++ + Sbjct: 829 SQATFDVVDGTLVYALGALKNVGVEAMRMMTDGRMVEGADKPFANVFDMARRVDLKRVGK 888 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R LE L AGA D +R ++ SLD + Y+ + R + ++F E G + Sbjct: 889 RPLEMLARAGAFDQLDPNRRRIFDSLDALTNYSAAIHDQRGSNQVSLFG-EAGDDLPEPR 947 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNN-IRL 997 L + + R E + +GFY SGHPLD Y P L++ G ++ + RG +++ Sbjct: 948 LSPVTDWLPAERLAEEFKAIGFYLSGHPLDDYMPALKRKGALTLDDVMLKAERGACVVKM 1007 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A V +Q++K+ +G+R +V S+P ++E F Sbjct: 1008 AGTVSGRQERKSARGNRFAFVQLSDPTGQFEVTMF 1042 >gi|85704828|ref|ZP_01035929.1| DNA polymerase III subunit alpha [Roseovarius sp. 217] gi|85670646|gb|EAQ25506.1| DNA polymerase III subunit alpha [Roseovarius sp. 217] Length = 1166 Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/1057 (47%), Positives = 692/1057 (65%), Gaps = 47/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP F+HL+VH+ YSLLEGA+ L + AA PA+A+TDTNN+F+ALEFS A Sbjct: 1 MSTSPRFIHLRVHTEYSLLEGAIRLKKLPSLCAAAGMPAVAVTDTNNMFAALEFSVSAQG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+D L + K P P +VLL GY+ L++L S +YL Sbjct: 61 AGVQPIMGCQIDLDYI-ALAPGERTKPPAP----LVLLGQNERGYENLMKLNSCLYLRGD 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + LS L+ EG+I L+GG GP+ R AE + + FGDRLYV Sbjct: 116 GSLP-HVTLSELKR-HAEGVICLSGGPDGPVGRLLQAGQRPGAEALMQRLMRAFGDRLYV 173 Query: 185 NLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH +R E +++AY LPLVATN+ F + YEAHD ++ VA Sbjct: 174 ELQRHPSDGGAPEAERLTERGHIEMAYAMGLPLVATNDVYFPKSDMYEAHDAMLCVADGA 233 Query: 239 VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q R R+TP HY K++ EM ++F+DLPEALEN+VEIA RC+F PILP+F + Sbjct: 234 YVDQSAPRRRLTPQHYFKSQDEMAALFADLPEALENSVEIATRCAFGCYKRDPILPKFAD 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E + ELR +A AGL+ RLA I ++Y +RL+FEL +I M F GYF Sbjct: 294 DEVE--------ELRRQARAGLQSRLA--VIPHAAPVEEYEERLEFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIQYVQEKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ A+AD+ R RE + VDRLL +Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591 RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + Sbjct: 524 RPLDELVPVYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDMIRKTGRPL 583 Query: 592 -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 G + D+ IP DD ++Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 NVAADGTELYQPPEGFEYDIGAIPLDDEKSYRLYASAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG +++ SIHP ID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGLKELESIHPSIDYILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA +NG++K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMENGVNKRKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLDWA 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 P VN F V D ++Y+L A+K VG + I +D+ F +L D RVD K++ Sbjct: 824 GPCVNHSEATFDVRDGVLHYALGALKNVGVEAMKLITAGRSDRSFATLYDVAQRVDLKRV 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ +S++ + Y+ + + + + ++F E G + Sbjct: 884 GKRPLEMLARAGAFDALDRNRRRVFESIEALMSYSAAIHEQKNSNQVSLFG-EAGDDLPE 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNN-I 995 L + R E + +GFY SGHPLD Y +LR+ +K +E A RG + Sbjct: 943 PRLAPVDDWLPAERLTEEFKAVGFYLSGHPLDDYMTVLRRQDVKTLDEVTAQAERGPALV 1002 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R + S+ +E F Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGSFEVTIF 1039 >gi|46202448|ref|ZP_00208519.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum magnetotacticum MS-1] Length = 1115 Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/1008 (48%), Positives = 678/1008 (67%), Gaps = 31/1008 (3%) Query: 44 IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103 + I+DT NLF ALEFS AGIQPI+G Q+ I +D + G+ P P ++VLL Sbjct: 1 MGISDTGNLFGALEFSTSCSDAGIQPIVGAQIAIRREDG-GPSKDGRKPEPD--TLVLLC 57 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 GY L++LVS+ +L ++ ++ L L E ++GLI+LTGG +GP+ R Sbjct: 58 QNEAGYLNLLKLVSKAFLETDAGETPQVTLHDL-ETRSDGLIILTGGPAGPVGRLLADGQ 116 Query: 164 SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSE 222 ++ AE L + F R YV + RH+ R E +V LAY H+LPLVATN + F Sbjct: 117 AEKAEIVLARLARAFAGRCYVEIMRHKLEVEDRIEPMLVSLAYKHDLPLVATNEAFFADR 176 Query: 223 EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282 YEAHD L+ +A +SQ +R R+TP+HY K+ EM ++F+DLPEA +NT+ IARRC+ Sbjct: 177 GMYEAHDALVCIAEGAYISQDERRRLTPEHYFKSPQEMRALFADLPEACDNTLVIARRCA 236 Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG-------YHAQ 335 F + PILP + D + + E LR K + GL+ RLA+ G + A+ Sbjct: 237 FGVAKRKPILPPY---RMDGLTEAEV--LRKKTLEGLDDRLAKHVFKDGMTDDEKDHAAK 291 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 YR+R++FEL VI +M F GYFLIV+DFIQW+K + IPVGPGRGSGAGS A+ALTITD+ Sbjct: 292 PYRERIEFELGVIEQMGFPGYFLIVSDFIQWSKAHEIPVGPGRGSGAGSAVAWALTITDL 351 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DPLR+ LLFERFLNP+R+SMPDFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG LQA+ Sbjct: 352 DPLRWGLLFERFLNPERVSMPDFDIDFCQDRREETIRYVQAKYGYSQVAQIITFGKLQAR 411 Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEI 514 A LRDVGR LQMPY QVDR+CKL+PN+PA+P++L QA+ ++ +E + D +V L+++ Sbjct: 412 AVLRDVGRVLQMPYGQVDRICKLVPNNPANPMTLEQALENEPLLKEQKERDETVSHLIDL 471 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + KLEGLYRHASTHAAG+VIGDRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFL Sbjct: 472 AMKLEGLYRHASTHAAGVVIGDRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKFDFL 531 Query: 575 GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GLKTLT++ ++ + + +G+ +DLS IP DD ++Y LL+ G+FQLESSGMR L Sbjct: 532 GLKTLTVMVTAVKHVKKSKGIDIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRDVLR 591 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 M P+ +ED+IA+V+LYRPGP+D I Y K+GKE+ +HPL++P+LKET G+++YQE Sbjct: 592 KMGPNRLEDLIAVVALYRPGPMDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMVYQE 651 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQIAQ+LSGYSL AD+LRRAMGKK +EEMD+Q+ +F+ GA+ + A IF+ + Sbjct: 652 QVMQIAQVLSGYSLGGADLLRRAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIFDKV 711 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 AKFA+YGFNKSHAAAYA+I+YQTAW+K +YP EF+AA+MT EM N +K+ F Q+ + Sbjct: 712 AKFAEYGFNKSHAAAYALIAYQTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELDRLG 771 Query: 814 IQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867 I+++PP +N+ F V G + + Y+LAA+K VG + ++E F + D Sbjct: 772 IKLLPPDINSSQPTFSVELLPDGGSAVRYALAALKNVGEAAMKSLVEERDRGGRFKDMGD 831 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +R+DSK LNRR LE++V AG D +R +L ++ D + +YA ++R + ++ Sbjct: 832 FAARMDSKVLNRRQLENMVKAGVFDSIDKNRGRLFKNADTLCRYAAQAAEDRQSSQMSLL 891 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 G+ + + LE + + E +GFY S HPLD Y ++++ + E Sbjct: 892 G---GSNAPTLKLESGPDWSPHEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIAELP 948 Query: 988 ATIRGNN---IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ +RLA ++SKQ++ + KGSR ++ FS+ + +E F Sbjct: 949 RHLQSGGKGRVRLAGSLLSKQERVSAKGSRYAFLQFSDASGMFEVTCF 996 >gi|88862980|gb|ABD53857.1| DNA polymerase III, alpha subunit [Jannaschia sp. CCS1] Length = 1155 Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/1043 (48%), Positives = 675/1043 (64%), Gaps = 69/1043 (6%) Query: 36 IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95 +A PA+A+TDTNN+F ALEFS+ A AG+QPIIGCQ+D++ + + G+ P Sbjct: 10 VADAGMPAVAVTDTNNMFCALEFSEMAKKAGVQPIIGCQIDLEYE----VIAPGEKPRAP 65 Query: 96 VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155 +IVLL GY+ L++L S +YL G S + LS L E EGLI L+GG GP+ Sbjct: 66 A-AIVLLAQNRAGYENLMKLNSALYLRGDGT-SPHVTLSELAE-HAEGLICLSGGPDGPV 122 Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRESQVVQLAYTHEL 209 R AE L T ++ DRLYV LQRH G ++ E V+LAY L Sbjct: 123 GRHLRAAQMPKAESLLKTLAAIYPDRLYVELQRHPGEGGLPEAEKLTERGHVELAYALGL 182 Query: 210 PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLP 268 PLVATN+ F E YEAHD ++ VA V Q + R R+TP HY K+ EM ++F+DLP Sbjct: 183 PLVATNDVYFPKSEIYEAHDAMLCVAQGAYVDQSEPRRRLTPQHYFKSADEMAALFADLP 242 Query: 269 EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328 EALENT+EIA+RC+F ++H PILP+F + E ELR A GL+ RL I Sbjct: 243 EALENTIEIAQRCAFRAEMHDPILPKFADDEV--------AELRRMANEGLKERLR--VI 292 Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388 +DY+ RLDFEL +I M F GYFLIVADFIQW+K IPVGPGRGSGAGS+ AY Sbjct: 293 PHAASVEDYQARLDFELEIIEGMGFPGYFLIVADFIQWSKDQEIPVGPGRGSGAGSLVAY 352 Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448 ALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG +RV QIIT Sbjct: 353 ALTITDLDPLRYSLLFERFLNPERISMPDFDIDFCMDRREEVIRYVQEKYGRDRVGQIIT 412 Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRF--------- 498 FG+L +KAA+RDVGR LQMP+ QVDRL K+IP + PVS+ QAI D+ RF Sbjct: 413 FGALLSKAAVRDVGRVLQMPFGQVDRLSKMIPVEGVKPVSIAQAIKDEPRFIEEMRESEQ 472 Query: 499 --REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 R+ R+ +P+ RL++ ++K+EGL R+ASTHAAG+VIGDRPL +LVP+YRD RSD+P T Sbjct: 473 DKRDGRV-NPT-RRLMDYAEKIEGLLRNASTHAAGVVIGDRPLDELVPLYRDPRSDMPAT 530 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------------------AQRGVKVDL 598 QFNMKW+E AGL+KFDFLGLKTLT++Q ++D + G + + Sbjct: 531 QFNMKWVEPAGLVKFDFLGLKTLTVVQNAIDLIHTSGRQLHEGPDGTTLYEPPEGTENQI 590 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +LIP DD +Y L + T+ +FQ+ESSGM AL M+PDCIEDIIALV+LYRPGP++NI Sbjct: 591 NLIPLDDKASYDLYASAKTVAVFQVESSGMMDALRRMKPDCIEDIIALVALYRPGPMENI 650 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + KNG + +HP +D +L ETQG+I+YQEQVMQIAQ ++GYSL AD+LRRAMG Sbjct: 651 PKFCEVKNGLSERERLHPTVDHLLDETQGIIVYQEQVMQIAQEMAGYSLGGADMLRRAMG 710 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KKI+E MD ++ +F++GA +NG+ + A+ + LL KFA+YGFNKSHAAAYAV+SYQTAW Sbjct: 711 KKIQEAMDAERPKFLAGAKENGVDEAKALETWALLDKFANYGFNKSHAAAYAVVSYQTAW 770 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K ++PVEF+AA M ++ +K+ + Q+ + I+ + P VN F V D ++ Y+ Sbjct: 771 LKANHPVEFMAAVMNCDIHLTDKLAVYKQEVDRMGIETLAPCVNRSAATFTVEDGKVLYA 830 Query: 839 LAAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 L A+K VG + I+E KP+ +L D RVD K++ +R LE LV AGA D Sbjct: 831 LGALKNVGVEAMKMIVEGRQTDQGVKPYATLFDLARRVDLKRVGKRSLEMLVRAGAFDEL 890 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV---R 951 +R +L SLD + Y+ V ++ ++F G D + + S + R Sbjct: 891 DRNRRHVLDSLDGLTAYSAAVHDQASSNQVSLF----GDAGDDLPEPRLSSAPDWLPNER 946 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKT 1009 E + +GFYFSGHPLD Y+P L++ G+ E A ++ ++A V KQ++K+ Sbjct: 947 LAAEHQAVGFYFSGHPLDDYQPALKRRGVMTLAEVEARVQQGPFVAKMAGAVSVKQERKS 1006 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 ++G+R +V+ S+P YE F Sbjct: 1007 QRGNRFAFVSLSDPTGLYEITIF 1029 >gi|254449414|ref|ZP_05062851.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238] gi|198263820|gb|EDY88090.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238] Length = 1168 Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/1060 (47%), Positives = 684/1060 (64%), Gaps = 57/1060 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ H+ YSLLEGA+ + I PA+A+TDTNNLF ALEFS+ A AG+Q Sbjct: 4 PRFIHLRTHTEYSLLEGAVPVKKICGLAEKFGMPAVAVTDTNNLFCALEFSEYAAKAGVQ 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGCQ+D+ L++ G+ P P +V L GY L++L S YL D G Q Sbjct: 64 PIIGCQVDL----GLRVDEPGRRPERPAP-LVFLAQNEAGYMNLMKLNSCAYL-DAGGQL 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 ++ + L + EGLI L+GG GPI R AE + +F DRLYV LQR Sbjct: 118 PQVTVDDLAKY-NEGLICLSGGPDGPIARLLRAGQRPAAEALMAQLAAIFSDRLYVELQR 176 Query: 189 HR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 H ++ E V++AY +LPLVATN+ F YEAHD L+ +A V Q Sbjct: 177 HPVDGGLPEAEQLSEQGHVEMAYAMDLPLVATNDVYFPKTSIYEAHDALICIADGAYVDQ 236 Query: 243 KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R R+TP HY K++ EMV++F+DLPEA+ NTVEIA+RC+F + PILP+F + E + Sbjct: 237 NEPRRRLTPQHYFKSQQEMVTLFADLPEAIANTVEIAKRCAFKVYTRDPILPKFADNEIE 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 EL+ +A AGL+ RL I +DY +RLDFEL +I M F GYFLIVA Sbjct: 297 --------ELKLQARAGLKNRLK--VIPHAVSVEDYEKRLDFELGIIEGMGFPGYFLIVA 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++AK N+IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID Sbjct: 347 DFIKFAKDNDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K+IP Sbjct: 407 FCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAIRDVGRVLQLPYGQVDKLSKMIPV 466 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + PVS+ +A+AD+ R RE + VDRLL Q+LEGL R+ASTHAAG+VIGDR L Sbjct: 467 EGVKPVSIVKALADEPRLREMAKNEEVVDRLLTYGQQLEGLLRNASTHAAGVVIGDRSLD 526 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---- 596 +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G + Sbjct: 527 ELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRDLHKSP 586 Query: 597 --------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 D++ IP DD +Y L T+ +FQ+ESSGM AL M+PDCIED Sbjct: 587 TGVELYVPAEGTLNDINAIPLDDEASYKLYAAAKTVAVFQVESSGMMDALRRMKPDCIED 646 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIALV+LYRPGP++NI + KNG +HP ID +L ETQG+I+YQEQVMQIAQ + Sbjct: 647 IIALVALYRPGPMENIPKFCEVKNGISDRDMLHPSIDHILDETQGIIVYQEQVMQIAQEM 706 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GYSL AD+LRRAMGKK++E MD +K +F++G+++NG++K A +++LL KFA+YGFN Sbjct: 707 AGYSLGGADLLRRAMGKKLQEAMDVEKPKFLAGSAENGVNKKKAQEVWDLLDKFANYGFN 766 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821 KSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ + PP V Sbjct: 767 KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPWSPPCV 826 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME---ASADKPFDSLEDFCSRVDSKKLN 878 NT F V D + Y L A+K VG I++ A KPF +L D RVD K++ Sbjct: 827 NTSLATFDVQDGTLVYGLGALKNVGVDAMGLIVDARLAEGAKPFSTLFDLARRVDIKRVG 886 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +R LE L AGA D +R ++ SLD + Y+ + + + ++F G D + Sbjct: 887 KRPLEMLARAGAFDVLDPNRRKVFASLDALVGYSSAIHDQKNSNQVSLF----GEAGDDL 942 Query: 939 TLEKFS-VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNN 994 + S VE+ + R E + +GFY SGHPLD Y L++ + +E A Sbjct: 943 PEPRLSAVEDWLPAERLSEEFKAVGFYLSGHPLDDYMAALKRTEKVLTLDEVTAKAASGA 1002 Query: 995 I--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++A V +Q++K+ +G+R +V S+P +YE F Sbjct: 1003 LVAKMAGTVAGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1042 >gi|163732864|ref|ZP_02140309.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149] gi|161394224|gb|EDQ18548.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149] Length = 1138 Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/1028 (47%), Positives = 665/1028 (64%), Gaps = 55/1028 (5%) Query: 42 PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101 PA+A+TD NN+F+ALEFS AG+QPI+GCQ+D+ + + + P P +VL Sbjct: 2 PALALTDKNNMFAALEFSVAMSGAGVQPILGCQVDVAYV-TAQPGEKERAPAP----VVL 56 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 L GY+ L+ L S +Y+ D+G ++ LS L EI +G+I LTGG GP+ + Sbjct: 57 LAQNETGYENLMRLNSCLYI-DKGGALPQVTLSEL-EINADGIICLTGGPDGPVGQLLQL 114 Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRESQVVQLAYTHELPLVATN 215 A+ + K F DRLYV LQRH G +R E V++AY +LPLVATN Sbjct: 115 GQMPAAQALMDRLKAAFQDRLYVELQRHPGESGQPEKERLTERGFVEMAYAMDLPLVATN 174 Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENT 274 + F + YEAHD L+ +A V Q+D R R+T HY K++SEM+++F+DLPEA+ENT Sbjct: 175 DVYFPKSDMYEAHDALICIAEGAYVDQQDDRRRLTNQHYFKSQSEMIALFADLPEAIENT 234 Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 VEIA+RC+F PILP+F + E + ELR +A AGL+ RL I Sbjct: 235 VEIAKRCAFQAYRRDPILPKFADDEVE--------ELRKQAHAGLKARLE--VIPHATSV 284 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 +DY +RLDFEL +I M F GYFLIVADFI+WAK+ IPVGPGRGSGAGS+ AYALT+TD Sbjct: 285 EDYTKRLDFELGIIEGMGFPGYFLIVADFIKWAKEQGIPVGPGRGSGAGSLVAYALTVTD 344 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 +DPLR++LLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L + Sbjct: 345 LDPLRYNLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLS 404 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLE 513 KAA+RD+GR LQMPY QVDRL K+IP + PVS++ A+AD+ R RE + V RLL Sbjct: 405 KAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLN 464 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 Q++EGL R+ASTHAAG+VIGDRPL LVP+Y+D RS++P TQFNMKW+E+AGL+KFDF Sbjct: 465 YGQQVEGLLRNASTHAAGVVIGDRPLDALVPLYQDPRSEMPATQFNMKWVEQAGLVKFDF 524 Query: 574 LGLKTLTLLQKSLD------------------FLAQRGVKVDLSLIPFDDHETYHLLTTK 615 LGLKTLT++Q +++ + G + D++ IP DD +Y L + Sbjct: 525 LGLKTLTVIQNAVEQIMASGRPLHIAADGTELYAPAAGTENDINAIPLDDERSYKLYASA 584 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675 T+ +FQ+ESSGM AL+ M+P CIEDI+ALV+LYRPGP++NI Y KNG + SIH Sbjct: 585 KTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMENIPTYCEVKNGLRALESIH 644 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 PLID +L+ETQG+I+YQEQVMQIAQ+++GYSL AD+LRRAMGKKI EEM K++ +F G Sbjct: 645 PLIDDILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKG 704 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A NG+ K A +F+LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M + Sbjct: 705 AVANGVDKDKAREVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCD 764 Query: 796 MDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854 + +K+ + ++ R+ + +PP VN FKV + + Y+L A+K VG + I Sbjct: 765 IHLTDKLAIYFEEVRKRLELPWVPPCVNRSAATFKVEEGALIYALGALKNVGVEAMKLIT 824 Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914 E DKPF +L D RVD K++ +R LE L +GA D +R ++ +LD + Y+ Sbjct: 825 EGRGDKPFATLFDLARRVDLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSAA 884 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 + + + + ++F E G + L + R E + +GFY SGHPLD Y Sbjct: 885 IHEQKASNQVSLFG-EAGDDLPEPRLHPVDDWQPAERLSEEFKAVGFYLSGHPLDDYMGQ 943 Query: 975 LRK----------MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 L++ M + E V N RLA +V +Q++K+ +G+R + S+P Sbjct: 944 LKRKWGNDRGVPFMTLDELTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDPT 1003 Query: 1025 KEYEANFF 1032 YE F Sbjct: 1004 GAYEVTLF 1011 >gi|254436926|ref|ZP_05050420.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter antarcticus 307] gi|198252372|gb|EDY76686.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter antarcticus 307] Length = 1172 Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/1060 (47%), Positives = 678/1060 (63%), Gaps = 53/1060 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ H+ YSLLEGA+ + I PA+A+TDTNNLF ALEFS+ A AG+Q Sbjct: 4 PRFIHLRTHTEYSLLEGAVPVKKICALAEKFDMPAVAVTDTNNLFCALEFSEYAAKAGVQ 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGCQ+D+ + + P P P IVLL GY L++L S YL D Q Sbjct: 64 PIIGCQIDLGLSADEPAQRNHTRPEPPAP-IVLLAQNEAGYMNLMKLNSCAYL-DADGQL 121 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 +I + L + + G+I L+GG GP+ R AE + +F DRLYV LQR Sbjct: 122 PQISIDDLA-MYSGGVICLSGGPDGPVGRLLRAGQRPAAEALMAQLAAIFPDRLYVELQR 180 Query: 189 HR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 H + E V++AY +LPLVATN+ F YEAHD L+ +A V Q Sbjct: 181 HPVDGGLPEAEHLSEQGHVEMAYAMDLPLVATNDVYFPKTSIYEAHDALICIADGAYVDQ 240 Query: 243 KD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R R+TP HY K++ EMV++F+DLPEA+ NTVEIA+RC+F + PILP+F + E D Sbjct: 241 NEPRRRLTPQHYFKSQQEMVTLFADLPEAIANTVEIAKRCAFKVYTRDPILPKFADNEID 300 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 EL+ +A AGL RL I +DY +RLDFEL +I M F GYFLIVA Sbjct: 301 --------ELKRQAHAGLTDRLK--VIPHAVSVEDYEKRLDFELGIIEGMGFPGYFLIVA 350 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++AK N+IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID Sbjct: 351 DFIKFAKDNDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDID 410 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K+IP Sbjct: 411 FCMDRREEVIRYVQGKYGRDKVGQIITFGALLSKAAIRDVGRVLQLPYGQVDKLSKMIPV 470 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + PVS+ +A+AD+ R RE + VDRLL Q+LEGL R+ASTHAAG+VIGDR L Sbjct: 471 EGVKPVSIVKALADEPRLREMAKNEEVVDRLLTYGQQLEGLLRNASTHAAGVVIGDRSLD 530 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---- 596 +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G + Sbjct: 531 ELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRDLHTGP 590 Query: 597 --------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 D++ IP DD +Y L T+ +FQ+ESSGM AL M+PDCIED Sbjct: 591 MGAELYVPATGTINDINAIPLDDEASYKLYAAAKTVAVFQVESSGMMDALRRMKPDCIED 650 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIALV+LYRPGP++NI + KNG + +HP ID +L ETQG+I+YQEQVMQIAQ + Sbjct: 651 IIALVALYRPGPMENIPKFCEVKNGLSEREKLHPSIDHILDETQGIIVYQEQVMQIAQEM 710 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GYSL AD+LRRAMGKK++E MD +K +F++G+ ++G+ K A+ +++LL KFA+YGFN Sbjct: 711 AGYSLGGADLLRRAMGKKLQEAMDVEKPKFLAGSLEHGVDKKKAMEVWDLLDKFANYGFN 770 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821 KSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ + PP V Sbjct: 771 KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPWSPPCV 830 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME---ASADKPFDSLEDFCSRVDSKKLN 878 NT F V + + Y L A+K VG I++ A PF +L D RVD K++ Sbjct: 831 NTSLATFDVQNGTLVYGLGALKNVGVDAMGLIVDARLAEGMSPFSTLFDLARRVDIKRVG 890 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +R LE L AGA D +R ++ SLD + Y+ + + + + ++F G D + Sbjct: 891 KRPLEMLARAGAFDVLDPNRRKVFASLDALVGYSSAIHEQKNSNQVSLF----GEAGDDL 946 Query: 939 TLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNN 994 + S + R E + +GFY SGHPLD Y L++ + +E A G Sbjct: 947 PEPRLSAVQDWLPAERLSEEFKAVGFYLSGHPLDDYMAALKRTEKVLTLDEVTAKAAGGA 1006 Query: 995 I--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++A V +Q++K+ +G+R +V S+P +YE F Sbjct: 1007 MVCKMAGTVAGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1046 >gi|254466532|ref|ZP_05079943.1| DNA polymerase III, alpha subunit subfamily, putative [Rhodobacterales bacterium Y4I] gi|206687440|gb|EDZ47922.1| DNA polymerase III, alpha subunit subfamily, putative [Rhodobacterales bacterium Y4I] Length = 1148 Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/1039 (47%), Positives = 675/1039 (64%), Gaps = 51/1039 (4%) Query: 27 LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMT 86 + L + D PAIA+TDTNNLFSALEFS A AG+QPIIGCQ+D+ + Sbjct: 1 MRLKKLPDLCKKHGMPAIAVTDTNNLFSALEFSVSASGAGVQPIIGCQVDLRFAE----P 56 Query: 87 NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146 G+ P P P +VLL + GY+ L++L S +YL QG + + L L+ + G+I Sbjct: 57 APGERPKPPAP-LVLLAQSEAGYEHLMKLNSCLYL-RQGGELPHVTLEELESY-SGGVIC 113 Query: 147 LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRESQV 200 L+GG GP+ R AE + K +F DRLYV LQRH G ++ E Sbjct: 114 LSGGPDGPVGRLLQMGQRPAAEALMQRLKAIFPDRLYVELQRHPGEHGQPEAEKQTERGH 173 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSE 259 V++AY LPLVATN+ F E +EAHD ++ +A V Q + R R+T HY K++ E Sbjct: 174 VEMAYAMGLPLVATNDVYFPDTEMFEAHDAMICIAEGAYVDQVEPRRRLTAQHYFKSQEE 233 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 MV++F+DLPEA+ENTVEIARRC+F+ PILP+F + E ELR A GL Sbjct: 234 MVALFADLPEAIENTVEIARRCAFMAYRRDPILPKFADDEV--------AELRRIANEGL 285 Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 + RLA I ++Y++RLDFEL +I M F GYFLIVADFIQWAK ++IPVGPGRG Sbjct: 286 QQRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYFLIVADFIQWAKDHDIPVGPGRG 343 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 SGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVI+YVQ KYG Sbjct: 344 SGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIKYVQEKYG 403 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRF 498 ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL KLIP + P+S+ A+ ++ R Sbjct: 404 RDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKLIPVEGVKPMSIADALKEEPRL 463 Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558 E +P VDRLL Q++EGL R A THAAG+VIGDRPL LVP+YRD RSD+P TQF Sbjct: 464 SEEARNEPVVDRLLTYGQQVEGLLRSAGTHAAGVVIGDRPLDALVPLYRDPRSDMPATQF 523 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ------------------RGVKVDLSL 600 NMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G + ++ Sbjct: 524 NMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDLHIAADGTQLYEPPEGAENQINA 583 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD TY L + T+ +FQ+ES+GM AL+ M+P CIEDI+ALV+LYRPGP++NI V Sbjct: 584 IPLDDKVTYDLYSRAKTVAVFQVESTGMMDALKRMKPTCIEDIVALVALYRPGPMENIPV 643 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQIAQ+++ Y+L AD+LRRAMGKK Sbjct: 644 YCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQIAQVMANYTLGGADLLRRAMGKK 703 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 IKE MD ++ +F GA++NG+ K A +F+LL KFA+YGFNKSHAAAYAV+SYQT W+K Sbjct: 704 IKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTGWLK 763 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 ++PVEF+A M ++ +K+ + ++ ++ ++ +PP +N F V + + Y+L Sbjct: 764 ANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLKYVPPCINRSLATFNVVNGELVYAL 823 Query: 840 AAIKGVGTTTARHIMEA----SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 A+K VG R + EA ++PF ++ DF RV+ KK+ +R LE L AGA D Sbjct: 824 GALKNVGLDVMRLVAEARKENGYERPFVNVFDFARRVNLKKVGKRPLEMLARAGAFDQLD 883 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R ++ +SL + Y+ V R + ++F E G + L + R E Sbjct: 884 SNRRRVFESLGALVDYSAAVHDQRNSSQVSLFG-EAGEDLPEPRLPSVPDWLPAERLSEE 942 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI-RLAAMVVSKQQKKTRKGS 1013 + +GFY SGHPLD Y P L++ + +E A RG + ++A +V +Q++K+ +G+ Sbjct: 943 FKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERGPFMAKMAGVVAGRQERKSARGN 1002 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 R + S+P+ +E F Sbjct: 1003 RFAFAQLSDPSGAFEVTLF 1021 >gi|84500130|ref|ZP_00998396.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597] gi|84392064|gb|EAQ04332.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597] Length = 1134 Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/1024 (48%), Positives = 670/1024 (65%), Gaps = 51/1024 (4%) Query: 42 PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101 PA+A+TDTNN+FSALEFS A GIQPIIGCQ+D+ M + + + K P P +VL Sbjct: 2 PAVAVTDTNNMFSALEFSVTASGEGIQPIIGCQVDL-MYLDRQPGEKPKAPAP----VVL 56 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 L + GY+ L+ L S +YL G Q ++ L L+E + +I LTGG GP+ Sbjct: 57 LAQSEAGYENLMRLNSCLYLTKPG-QLPQVTLDELREFSGD-VICLTGGPDGPVGMLLQA 114 Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRESQVVQLAYTHELPLVATN 215 A+ + +++FGDRLYV LQRH G +R E V++AY ELPLVATN Sbjct: 115 RQRPAAQTLMDRLREMFGDRLYVELQRHPGEGGLPEKERLTERGFVEMAYAMELPLVATN 174 Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENT 274 + F E YEAHD L+ +A V Q++ R R+T HY K EM ++F+DLPEALENT Sbjct: 175 DVYFPKEGMYEAHDALICIADGAYVDQQEPRRRLTAQHYFKTPEEMATLFADLPEALENT 234 Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 VEIARRC+F+ PILP+F + E ELR A AGL+ RLA I Sbjct: 235 VEIARRCAFMAYRRDPILPKFADDEV--------AELRRMANAGLQARLA--VIPHAVSP 284 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++Y++RLDFEL +I M F GYFLIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD Sbjct: 285 EEYQERLDFELGIIEGMGFPGYFLIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITD 344 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 +DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L + Sbjct: 345 LDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLS 404 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLE 513 KAA+RD+GR LQMPY QVDRL K+IP + PVS+ A+ + R R + V RLL+ Sbjct: 405 KAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSISDALKQEERLRAEARNEEVVKRLLD 464 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 ++EGL R+ASTHAAG+VIGDRPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDF Sbjct: 465 YGMEVEGLLRNASTHAAGVVIGDRPLDRLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDF 524 Query: 574 LGLKTLTLLQKSLDFL---------AQRGVKV---------DLSLIPFDDHETYHLLTTK 615 LGLKTLT++Q +++ + A G ++ ++ IP DD +TY L + Sbjct: 525 LGLKTLTVIQNAIEQIHAGGRDLHTAADGAQIYEPFPGAENQINAIPLDDAKTYELYSRA 584 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675 T+ +FQ+ESSGM AL+ M+P CIEDI+ALV+LYRPGP++NI Y KNG+ +I S+H Sbjct: 585 KTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMENIPTYCEVKNGQREIESVH 644 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 PLID +L+ETQG+I+YQEQVMQIAQ ++GY+L AD+LRRAMGKKIKE MD ++ +F G Sbjct: 645 PLIDHILEETQGIIVYQEQVMQIAQEMAGYTLGGADLLRRAMGKKIKEAMDAERPKFEKG 704 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A++ G+ K A +F+LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M + Sbjct: 705 AAEKGVEKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCD 764 Query: 796 MDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854 + EK+ + ++ +Q + +PP VN F V D + Y+L A+K VG R ++ Sbjct: 765 IHLTEKLAIYFEEVKKQLGLPYIPPCVNRSDSAFTVKDGALVYALGALKNVGLDAMRLVV 824 Query: 855 EA----SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 E DKPF +L DF RV+ K++ +R LE + AGA D +R ++ SLD + + Sbjct: 825 EGRRVDGEDKPFVNLFDFARRVELKRVGKRPLEMMARAGAFDVLDPNRRRVFDSLDALVQ 884 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 Y+ + + + + ++F + G + L + R E + +GFY SGHPLD Sbjct: 885 YSAAIWEQKQSSQVSLFG-DAGEDLPEPRLSPVQDWLPAERLAEEFKAIGFYLSGHPLDD 943 Query: 971 YKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y L++ IK +E G + ++A +V +Q++K+ +G+R +V S+ YE Sbjct: 944 YSAALKRKDIKTLDEVWQMASGGALIAKMAGVVAGRQERKSARGNRFAFVQISDRTGAYE 1003 Query: 1029 ANFF 1032 F Sbjct: 1004 CTVF 1007 >gi|83858389|ref|ZP_00951911.1| DNA polymerase III subunit alpha [Oceanicaulis alexandrii HTCC2633] gi|83853212|gb|EAP91064.1| DNA polymerase III subunit alpha [Oceanicaulis alexandrii HTCC2633] Length = 1150 Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/1033 (48%), Positives = 683/1033 (66%), Gaps = 22/1033 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+V S YSLLEGA+ + PA A+TD+NNLF ALEFS+ G+QPI Sbjct: 6 FVHLRVRSPYSLLEGAIRIKETAALCKTFSMPAAALTDSNNLFGALEFSEVLSGEGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L I +++ G+ P ++VLL + GY L++L S YL Sbjct: 66 IGVTLSIQVEE----PRPGERSRPDG-TLVLLAQSELGYANLMKLSSAAYLDVAATDEPH 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + + + E ++GLI LTGG G ++R + A++ L + F DRLY+ LQRH Sbjct: 121 VPIDRVLE-HSDGLICLTGGFDGVLNRFVCAGRTGPAQELLDRLRARFPDRLYLELQRHG 179 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 R D E +V AY +LPLVATN F E Y+AHD L+ ++ VS +DR ++T Sbjct: 180 RADDVTAEDWLVDRAYALDLPLVATNEPHFPRSELYQAHDALLCISEGAYVSMEDRRKLT 239 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 +H K+ + M F+DLPEA+ NTVEIA+RC+F + PILP F E D + E Sbjct: 240 AEHDFKSGAAMADRFADLPEAIANTVEIAQRCAFRPRTSKPILPSF-PTEGD---RNEAE 295 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 ELR +++AGLE RL++ +A A Y +RLD+EL +I RM F GYFLIV+DFIQWAK Sbjct: 296 ELRARSIAGLEDRLSKIELADTREA--YFERLDYELGIIERMGFPGYFLIVSDFIQWAKA 353 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 ++IPVGPGRGSGAGS+ A+ALTIT++DPLRF LLFERFLNP+R+SMPDFD+DFCQDRR E Sbjct: 354 HDIPVGPGRGSGAGSLVAWALTITNLDPLRFGLLFERFLNPERVSMPDFDVDFCQDRRGE 413 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VIRYVQ +YG +RVAQIITFG+LQA+A +RDVGR LQ+P+ VDR+ K +PN+PA P++L Sbjct: 414 VIRYVQERYGQDRVAQIITFGTLQARAVVRDVGRVLQLPFGLVDRIAKQVPNNPAQPITL 473 Query: 490 -QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + + +E + D VDRL+ ++ +LEGL+R+ASTHAAG+VIGDRPL++LVP+Y+D Sbjct: 474 AEAVKTEPKLQEMQRNDEMVDRLINVALQLEGLFRNASTHAAGVVIGDRPLTELVPLYQD 533 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHE 607 RSDLP TQFNMKW+E AGL+KFDFLGLKTLT++ ++L ++ G+ + D+ I D Sbjct: 534 PRSDLPATQFNMKWVEPAGLVKFDFLGLKTLTVISRALSYIESAGLDRPDMDAISLTDPA 593 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY LL ++G+FQLES+GMR L ++PD IEDIIAL+SLYRPGP+ NI VY +RK G Sbjct: 594 TYELLGVGASIGVFQLESTGMRDTLRKLKPDSIEDIIALISLYRPGPMKNIDVYVDRKFG 653 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + + +HP ++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK KEEMD+ Sbjct: 654 RAEPDYLHPDLEPVLKETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKKKEEMDQ 713 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+ RF GA K G+S+ A IF+L+A+FA YGFNKSHAAAYA+I+YQT W+K ++P F Sbjct: 714 QRVRFNEGAEKRGVSREKANYIFDLVAEFAGYGFNKSHAAAYALIAYQTGWLKANHPAAF 773 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 +A M+L+ N EK+ F Q+A++ ++++PP VN DF + D +I Y+L AI+ VG Sbjct: 774 MAGLMSLDSANTEKLAVFFQEAKRIGLEVLPPDVNASEADFSLEDGKIRYALGAIRNVGY 833 Query: 848 TTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + H+ + A PF + DF RVD +++N+R E+L AGA D R + L S + Sbjct: 834 SAMEHVADVRKAGGPFRDVFDFAERVDPRQVNKRAFENLARAGAFDTLEPDRAKALASAE 893 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFYF 963 + +Q + R + ++F K+ L + + R + E +G+Y Sbjct: 894 ILLSVSQNAQSERDSAQASLFGGGGEGGGTKLERPNLPEPEPWDPVRRLDEELAAIGYYL 953 Query: 964 SGHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKT-RKGSRIGWVTF 1020 SGHPLD P L + G+ + + S A RLAA+V +Q+K + R G + +VT Sbjct: 954 SGHPLDDMMPALGRRGVVVFADLPSKAAEGARAARLAAVVRRRQEKVSQRSGEKFAFVTL 1013 Query: 1021 SEPAKEYEANFFP 1033 S+P+ E+EA P Sbjct: 1014 SDPSGEFEALVPP 1026 >gi|209964522|ref|YP_002297437.1| DNA polymerase III subunit alpha [Rhodospirillum centenum SW] gi|209957988|gb|ACI98624.1| DNA polymerase III alpha subunit [Rhodospirillum centenum SW] Length = 1165 Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/1047 (48%), Positives = 707/1047 (67%), Gaps = 30/1047 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS+YSL EGA+ + ++ PA+A+TDT NLF LEF+ A AGIQPI Sbjct: 4 FIHLRVHSAYSLSEGAIKVKELVKLCQKQGMPAVAVTDTGNLFGCLEFAMAAADAGIQPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGCQ+ I K G+T P +VLLV + +GY+ L++LVS+ YL + + Sbjct: 64 IGCQMWIRSWGPQK-RGLGRTTGPAADQLVLLVQSQQGYRNLMKLVSKAYLETEPGLLPQ 122 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + + L E +EGLI LTGG G + R AE+ LL LF RLYV L RH Sbjct: 123 VSVDDL-EGHSEGLICLTGGPGGGVGRLLAEGQKPHAEELLLRLAALFPGRLYVELMRHP 181 Query: 190 -----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + DR E ++ LAY H+LPLVATN+ F ++AHDVL+ +A + Q++ Sbjct: 182 EGPMGQAEDRI-EPDLIDLAYAHDLPLVATNDVYFADPGMHQAHDVLLCIAEGAYIMQEE 240 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R RVTP H K+ +EM +F+DLPEA++NTV IARRC+++ + PILP F+ + + Q Sbjct: 241 RRRVTPHHCFKSAAEMRELFADLPEAVDNTVVIARRCAYMPKKVNPILPAFVPGDSKEAQ 300 Query: 305 KE-EENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGY 356 +E E +ELR +A GL RL + + YR+RLDFELN I +MKF GY Sbjct: 301 EELEADELRRQAHEGLTWRLEKYVFTPDQTPETRTEIEAQYRERLDFELNTIVKMKFPGY 360 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV+DFI+WAK IPVGPGRGSGAGS+ A++L+ITD+DP+R+ LLFERFLNP+R+SMP Sbjct: 361 FLIVSDFIKWAKGQGIPVGPGRGSGAGSLVAWSLSITDLDPIRYGLLFERFLNPERVSMP 420 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFCQDRRDEVIRYVQ KYG+++VAQIITFG LQA+A +RDVGR LQMPY QVDR+C Sbjct: 421 DFDVDFCQDRRDEVIRYVQRKYGYDKVAQIITFGKLQARAVVRDVGRTLQMPYGQVDRIC 480 Query: 477 KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIPN+PA+PV LQ AI + ++ R +D +V RLL+I+ KLEGLYRHASTHAAG+VIG Sbjct: 481 KLIPNNPANPVGLQQAIDGEPLLQDMRKSDETVGRLLDIALKLEGLYRHASTHAAGVVIG 540 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 DRPL +LVP+YRD RSD+PVTQFNMK++E AGL+KFDFLGLKTL++L+ ++D + R V Sbjct: 541 DRPLDELVPLYRDPRSDMPVTQFNMKYVELAGLVKFDFLGLKTLSVLKTAVDHVRHRDVD 600 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +DL +P D ++Y LL + G+FQLESSGMR L M+P+ IEDIIALVSLYRPGP+ Sbjct: 601 LDLLDLPMLDEKSYGLLGRAESSGVFQLESSGMRDVLRRMKPNRIEDIIALVSLYRPGPM 660 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI Y K G+E +HP ++P+LKET G+++YQEQVMQIAQ+L+GYSL AD+LRR Sbjct: 661 DNIPKYIKVKFGEEAPDYMHPSLEPILKETFGIMVYQEQVMQIAQVLAGYSLGGADLLRR 720 Query: 716 AMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 AMGKKIKEEM+K++ +FI+GA K G+ + + IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 721 AMGKKIKEEMEKERAKFIAGAKEKMGVDEEHSGLIFDQVNKFAGYGFNKSHAAAYALVAY 780 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830 QTA++K ++PVEF+AA+MT ++ N +K+ +F Q+ + ++++PP +N F V Sbjct: 781 QTAYLKANFPVEFMAATMTYDLGNTDKLNQFKQELDRLRVRLLPPDINRSGERFTVEVMP 840 Query: 831 -GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 GD + Y+LAAIKGVG ++ E A+ PF + DF RVD+ +N+R++E LV A Sbjct: 841 NGDRAVRYALAAIKGVGLPAMEAVVAERRANGPFRDIFDFARRVDTGAINKRMMEKLVCA 900 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D R QL LD I ++AQ + R + ++F + L + + + Sbjct: 901 GAFDALNAHRHQLFAGLDTIMRFAQSEAQQRESGMASLFGASAALKTPD--LPRIADWDP 958 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIR--LAAMVVSKQ 1005 + +E +GFY S HPLD Y L ++G+ + + A + RG + R +A +VV++Q Sbjct: 959 LEKLRHEFEAIGFYLSAHPLDGYGKALERLGVVRFADLAARVARGGSTRFKMAGIVVARQ 1018 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + G+R +++ S+ + +E F Sbjct: 1019 ERTAKSGNRFAFISMSDSSGVFEVTLF 1045 >gi|329115626|ref|ZP_08244348.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001] gi|326695054|gb|EGE46773.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001] Length = 1139 Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/1038 (47%), Positives = 680/1038 (65%), Gaps = 40/1038 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+YSL +GA+ + +I+ PA+ I D+ NLF ALEFSQ +GIQPI Sbjct: 6 FVHLRVHSAYSLSQGAIRVPDIVGLAKEMHMPAVGIADSGNLFGALEFSQYCTKSGIQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG Q+ + +++ K P P +VLL G L + +S + Sbjct: 66 IGSQIGLPARND-------KPGAPAEP-VVLLAQNEAGLANL-QFLSSAGFQNSDPADPF 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L L E EGL++LTGG+ GP+ + ++ AEK L + FGDRL V L RH Sbjct: 117 VSLDLLCE-KAEGLLLLTGGTRGPLFQMLAEGQTEDAEKWLARVHEAFGDRLIVELHRHG 175 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G ++ E V+ LA LPLVATN F + + YEA D L+ +A +++KDR RVT Sbjct: 176 LGVEKAVEPGVLTLADRFGLPLVATNECFFPTPKMYEAQDALLCIAQGRTMAEKDRFRVT 235 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK--EE 307 P+H+ K M ++F+DLP+A +NT+EIARRC+ ++ P+LP C +++ E Sbjct: 236 PEHWFKPPEMMRALFADLPDACDNTLEIARRCAIKVETRKPLLP-----VCPKVREGATE 290 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A GLE R++ G + Y++RL FEL++I++M F GYF+IVADFIQWA Sbjct: 291 DETLRAMAWEGLEHRMS-GMKLDAETVEKYKERLRFELDIISKMGFPGYFMIVADFIQWA 349 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K + IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRR Sbjct: 350 KAHGIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRR 409 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV+++YG +RVAQIITFG LQA+AA+RDVGR L +PY V+R+ +LIPN+PA PV Sbjct: 410 DEVISYVRHEYGSDRVAQIITFGKLQARAAVRDVGRVLGLPYGMVNRVAELIPNNPAKPV 469 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L +AIA + + +E R D ++ RLLEI+Q+LEGL+RHASTHAAG+VIGDRPL QLVP+Y Sbjct: 470 TLKEAIAGEPKLQEMRDNDEALRRLLEIAQQLEGLFRHASTHAAGVVIGDRPLVQLVPLY 529 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD +SD VTQ+NMK++E+AGL+KFDFLGL TLT+L++ +DF+ + G VDLS IP DD Sbjct: 530 RDPKSDTLVTQYNMKFVEQAGLVKFDFLGLTTLTILKRGVDFIRRMGKDVDLSHIPLDDP 589 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L T G+FQ E +GMR L+ M+P IED+IA V+LYRPGP+ NI Y RK+ Sbjct: 590 KTYEMLGRGDTAGVFQFEGAGMRDVLKQMRPTRIEDLIAAVALYRPGPMANIPDYCRRKH 649 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G E H I +L+ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ EMD Sbjct: 650 G-EVWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRSEMD 708 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+E F GA+K GI + AV +F+L+AKFADYGFNKSHAAAYA +SYQTAWMK ++PV Sbjct: 709 HQREIFTEGATKRGIDRDKAVEVFDLMAKFADYGFNKSHAAAYAFVSYQTAWMKANHPVA 768 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAA 841 FLAA M+L + EK+ Q+A + +I ++PP++N DF V G I Y+LAA Sbjct: 769 FLAACMSLARERTEKLAALRQEAERMHIAVLPPNINKSEADFSVEKQPDGTYAIRYALAA 828 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IK VG ++E +KPF +L DF R+D K +NR LE+L AGA +C +R ++ Sbjct: 829 IKKVGYGAMESLVEVRGEKPFKNLADFAIRIDPKHINRMQLENLAKAGAFECIDKNRARV 888 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSV----RFENEQ 956 +S D I + A ++ + + + G F +E VE R E Sbjct: 889 FRSADVILRRAH-------SQAQEAASGQIGLFGGPGEVEPLRLVEGHDWPEFERLAMEA 941 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 +GF+ + HPLD Y +LR++G+ + + A + G +++A VV K+++ TR G++ Sbjct: 942 EAIGFHMTAHPLDAYGSVLRRLGVTRTSQLLTAAELGGGRVKIAGCVVDKKERPTRTGNK 1001 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + WV S+ + E F Sbjct: 1002 MAWVRLSDASGGCEVTVF 1019 >gi|258543019|ref|YP_003188452.1| DNA polymerase III subunit alpha [Acetobacter pasteurianus IFO 3283-01] gi|256634097|dbj|BAI00073.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-01] gi|256637157|dbj|BAI03126.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-03] gi|256640209|dbj|BAI06171.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-07] gi|256643266|dbj|BAI09221.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-22] gi|256646321|dbj|BAI12269.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-26] gi|256649374|dbj|BAI15315.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-32] gi|256652360|dbj|BAI18294.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655418|dbj|BAI21345.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-12] Length = 1139 Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/1038 (47%), Positives = 678/1038 (65%), Gaps = 40/1038 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS+YSL +GA+ + +I PA+ I D+ NLF ALEFSQ +GIQPI Sbjct: 6 FIHLRVHSAYSLSQGAIRVPDIAGLAKEMYMPAVGIADSGNLFGALEFSQYCTKSGIQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG Q+ + +++ K P P +VLL G L + +S + Sbjct: 66 IGSQIGLPARND-------KPGAPAEP-VVLLAQNEAGLANL-QFLSSAGFQNSDPADPF 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L L E EGL++LTGGS GP+ + ++ AEK L + FGDRL V L RH Sbjct: 117 VSLDLLCE-KAEGLLLLTGGSRGPLFQMLAEGQTEDAEKWLARVHEAFGDRLIVELHRHG 175 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ E V+ LA LPLVATN F + E YEA D L+ +A +++KDR RVT Sbjct: 176 LAIEKAVEPGVLTLADRFGLPLVATNECFFPTPEMYEAQDALLCIAQGRTMAEKDRFRVT 235 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK--EE 307 P+H+ K M ++F+DLP+A +NT+EIARRC+ ++ P+LP C +++ E Sbjct: 236 PEHWFKPPEMMRALFADLPDACDNTLEIARRCAIKVETRKPLLP-----VCPKVREGATE 290 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A GLE R++ G + Y++RL FEL++I++M F GYF+IVADFIQWA Sbjct: 291 DETLRAMAWEGLERRMS-GMKLDAETIEKYKERLRFELDIISKMGFPGYFMIVADFIQWA 349 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K + IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRR Sbjct: 350 KAHGIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRR 409 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY V+R+ +LIPN+PA PV Sbjct: 410 DEVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGMVNRVAELIPNNPAKPV 469 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L +AIA + + +E R D ++ RLLEI+Q+LEGL+RHASTHAAG+VIGDRPL QLVP+Y Sbjct: 470 TLKEAIAGEPKLQEMRDNDEALRRLLEIAQQLEGLFRHASTHAAGVVIGDRPLVQLVPLY 529 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD +SD VTQ+NMK++E+AGL+KFDFLGL TLT+L++ +DF+ + G VDLS IP DD Sbjct: 530 RDPKSDTLVTQYNMKFVEQAGLVKFDFLGLTTLTILKRGVDFIRRMGKDVDLSHIPLDDP 589 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L T G+FQ E +GMR L+ M+P IED+IA V+LYRPGP+ NI Y RK+ Sbjct: 590 KTYEMLGRGDTAGVFQFEGAGMRDVLKQMRPTRIEDLIAAVALYRPGPMANIPDYCRRKH 649 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G E H I +L+ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ EMD Sbjct: 650 G-EAWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRSEMD 708 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+E F GA+K GI + AV +F+L+AKFADYGFNKSHAAAYA +SYQTAWMK ++PV Sbjct: 709 HQREIFTEGATKRGIDRDKAVEVFDLMAKFADYGFNKSHAAAYAFVSYQTAWMKANHPVA 768 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAA 841 FLAA M+L + EK+ Q+A + +I ++PP++N DF V G I Y+LAA Sbjct: 769 FLAACMSLARERTEKLAALRQEAERMHIAVLPPNINKSEADFSVEEQPDGTYAIRYALAA 828 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IK VG ++EA +KPF +L DF R+D K +NR LE+L AGA +C +R ++ Sbjct: 829 IKKVGYGAMESLVEARGEKPFKNLADFAIRIDPKHINRMQLENLAKAGAFECIDKNRARV 888 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSV----RFENEQ 956 +S D I + A ++ + + + G F +E VE R E Sbjct: 889 FRSADVILRRAH-------SQAQEAASGQIGLFGGPGEVEPLRLVEGHDWPEFERLAMEA 941 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 +GF+ + HPLD Y +LR++G+ + + A + G +++A VV K+++ TR G++ Sbjct: 942 EAIGFHMTAHPLDAYGSVLRRLGVTRTSQLLTAAELGGGRVKIAGCVVDKKERPTRTGNK 1001 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + WV S+ + E F Sbjct: 1002 MAWVRLSDASGGCEVTVF 1019 >gi|114327944|ref|YP_745101.1| DNA polymerase III subunit alpha [Granulibacter bethesdensis CGDNIH1] gi|114316118|gb|ABI62178.1| DNA polymerase III alpha subunit [Granulibacter bethesdensis CGDNIH1] Length = 1143 Score = 939 bits (2427), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/1035 (48%), Positives = 666/1035 (64%), Gaps = 30/1035 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL+VHS+YSL EGA+ + I PA+A+TD+ NLF LEFSQ G+QP Sbjct: 5 NFVHLRVHSAYSLSEGAIKTDKIPALARQMAMPAVAMTDSGNLFGILEFSQACAGKGVQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGCQ+ + + Q + P P +VLL G + L S +L QG+ Sbjct: 65 IIGCQIGL-----ARPEQQQRLP-PD--QLVLLARDEAGLANIQRLSSLGFL--QGEPGA 114 Query: 130 RICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + L L+ I EG+++LTGG+SGP+ R AE+ L K+ F DR + L Sbjct: 115 KPQLP-LETILAHAEGVMLLTGGTSGPLARLLAEGQKGEAERLLAVLKEAFPDRTVIELH 173 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 RH ++ E ++ LA LPLVATN+ F + YEAHD L+ +A V+S+ DR Sbjct: 174 RHGLRLEKAIEPGLIALADAAGLPLVATNDCYFAQPDMYEAHDALLCIAEGRVLSETDRR 233 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 RVTPDH+ K M ++FSDLPEA +NT+ IAR C + + P+LP + + + Q E Sbjct: 234 RVTPDHWFKPPEMMRALFSDLPEACDNTIAIARSCVVMAETRKPLLP--VCPKVHEGQTE 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 +E +R AV GLE R+ A+ YR+RLD+EL+VIARM F GYFLIVADFIQW Sbjct: 292 DET-VRAMAVEGLERRMEDVGAGPEDRAR-YRERLDYELDVIARMGFPGYFLIVADFIQW 349 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N+IPVGPGRGSGAGSV A+ALTITD+DPLRF+LLFERFLNPDR+SMPDFDIDFCQDR Sbjct: 350 AKANDIPVGPGRGSGAGSVVAWALTITDLDPLRFNLLFERFLNPDRISMPDFDIDFCQDR 409 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV+ +YG +RVAQIITFG LQAKAA+RDVGR L MP+ QV+++ +LIPN+PA P Sbjct: 410 RDEVISYVRGEYGGDRVAQIITFGKLQAKAAVRDVGRVLGMPFGQVNKVAELIPNNPAKP 469 Query: 487 VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +LQ AI + R ++ R +D +V RLLEI+ ++EGLYRHASTHAAG+VIGDRPL +LVP+ Sbjct: 470 PTLQEAIDGEPRLQQMRESDEAVKRLLEIALQIEGLYRHASTHAAGVVIGDRPLVELVPL 529 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD +SD VTQF+MK +E AGL+KFDFLGL TLT+LQ+++ FLA GV VDL+ +P DD Sbjct: 530 YRDPKSDFLVTQFSMKHVENAGLVKFDFLGLTTLTILQRAVKFLAGLGVSVDLAHVPLDD 589 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 TY +L G+FQ ES GMR L M+PD ED+IA V+LYRPGP+ NI Y RK Sbjct: 590 ERTYQMLQRGDAGGVFQFESQGMRDVLRQMRPDRFEDLIAAVALYRPGPMANIPAYCQRK 649 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G E H I +L ET G+++YQEQVMQIAQ L+GYSL AD LRRAMGKKI+ EM Sbjct: 650 HG-EAWEPPHEDIRDILGETYGIMVYQEQVMQIAQKLAGYSLGAADSLRRAMGKKIRAEM 708 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 + + F GASK GI + IF+L+ KFADYGFNKSHAAAYA+++YQTA+MK +YP Sbjct: 709 ETHRSIFAEGASKRGIPDAKSGEIFDLMVKFADYGFNKSHAAAYALVAYQTAYMKANYPE 768 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLA 840 FLAA M+L ++N +K+ Q+A + I ++PP +N DF+V G I Y+LA Sbjct: 769 PFLAACMSLAINNTDKLAALRQEATRLGISVLPPDINCSAADFRVEQREDGRLAIRYALA 828 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIK VG + ++ A ++ F L DF +RVD ++LNR +E+L AGA D +R Sbjct: 829 AIKRVGLSAMEAVVAARGEQAFTDLADFAARVDPRQLNRMQIENLARAGAFDSLVPNRAA 888 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + + D I + AQ + + + +FA GT + + L R E +G Sbjct: 889 VHGAADMILRRAQAASEEKNSGQIGLFAG-AGT-PEPLRLPSCPDWPDMERLSFEAEAIG 946 Query: 961 FYFSGHPLDVYKPILRKMGI---KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 F+ + HPLDVY L+K+ + EE A +RLA VV+ +++ TR GSR+ W Sbjct: 947 FHLTAHPLDVYTVTLQKLRVLPSNRIEEHAARHGDQRVRLAGCVVNAKERTTRTGSRMAW 1006 Query: 1018 VTFSEPAKEYEANFF 1032 V S+ YE F Sbjct: 1007 VRLSDAGGSYEITVF 1021 >gi|114770394|ref|ZP_01447932.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255] gi|114549231|gb|EAU52114.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255] Length = 1128 Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/1016 (46%), Positives = 672/1016 (66%), Gaps = 43/1016 (4%) Query: 36 IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95 + +Q PA+A+TDTNN+F ALEFS+ A G+QPI+GCQ+++ ++ P P Sbjct: 10 VIKEQMPAVALTDTNNMFGALEFSEIASIEGVQPIVGCQMNLAYMTADNPRDRNPLPLP- 68 Query: 96 VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155 IVLL + GY L++L S ++L + G + I + LQ+ +GLI LTGG+ GP+ Sbjct: 69 ---IVLLAQSEIGYLNLMKLSSCLFL-ESGDEPAHITTTQLQKY-NDGLICLTGGALGPV 123 Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR--------ESQVVQLAYTH 207 + A+ L ++F +R YV +QRH G D + E +++AY+ Sbjct: 124 GQLLQDGHIDKAKILLKHLSEIFLNRTYVEIQRH-GSDGEKYTLEEQKTEKYFLEMAYSM 182 Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSEMVSIFSD 266 ELPLVATN+ F + E Y AHD L+ ++ + V Q+D R R+TP+HY K+ EM+ +F D Sbjct: 183 ELPLVATNDVYFPNREMYAAHDALLCISEGSYVDQQDGRRRLTPEHYFKSSGEMIELFKD 242 Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326 LPEA++NT+EIA+RC+F + PILP+F E D++Q ELR +A GL+ RL Sbjct: 243 LPEAIDNTIEIAKRCAFKVYKRDPILPKFAE---DEVQ-----ELRRQANEGLKKRLE-- 292 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 I Y+ RL+FEL++I M F GYFLIVADFI+W+K N+IPVGPGRGSGAGS+ Sbjct: 293 VIQHATTVDVYQDRLNFELDIIEGMGFPGYFLIVADFIRWSKSNDIPVGPGRGSGAGSLV 352 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG +RV QI Sbjct: 353 AYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQGKYGRDRVGQI 412 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLAD 505 ITFG L +KAA+RDVGR LQMPY QVDRL KLIP + PVS++ A+A++ + RE ++ Sbjct: 413 ITFGGLLSKAAIRDVGRVLQMPYGQVDRLSKLIPVEGVKPVSIEKALAEEPQLREMAKSE 472 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 VDR+L+ +Q++EGL R+ASTHAAG+VI DRP+ +LVP+Y+D RSD+P TQFNMKW+E+ Sbjct: 473 EVVDRMLKYAQQVEGLLRNASTHAAGVVIADRPIDELVPLYQDPRSDMPATQFNMKWVEQ 532 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 AGL+KFDFLGLKTLT+++ ++D + +RG+ V++ I +D T+ L + T+ +FQ+ES Sbjct: 533 AGLVKFDFLGLKTLTVVKGAVDLIRKRGINVNIDAIDLEDKATFDLYASAKTVAVFQVES 592 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 SGM AL M+P+CIEDI+ALV+LYRPGP++NI Y + KNG+ +HP ID +L+ET Sbjct: 593 SGMMDALRRMKPNCIEDIVALVALYRPGPMENIPQYCDVKNGRADRELMHPSIDHLLEET 652 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 QG+I+YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ EMDK++ +F+ GA NG+ Sbjct: 653 QGIIVYQEQVMQIAQEMAGYSLGGADLLRRAMGKKIQAEMDKERPKFLEGAFNNGVEPKK 712 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A +++LL KFA+YGFNKSHAAAYAV+SYQTAW+K +YPVEF+A+ M ++ +K+ + Sbjct: 713 AEEVWDLLDKFANYGFNKSHAAAYAVVSYQTAWLKANYPVEFMASVMNCDLHLTDKLHVY 772 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDS 864 + ++ I+I+PP +N F V D I Y+L +K VG+ R +A + F Sbjct: 773 FDEVKRLGIEIIPPCINRSEALFSVNDGMIAYALGGLKNVGSDAMRLFTDARINGGLFLD 832 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 L D RVD +++ +R LE L+ +GA D +R ++ +SLD + Y+ + HE Sbjct: 833 LIDVARRVDLRRVGKRPLEMLIRSGAFDQLDSNRKKVFESLDALVGYS-------SATHE 885 Query: 925 NIFAHEKGTFSDK---ITLEKFSVENSSV---RFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + + G F D + + + + R E + +GFY SGHPLD Y L++ Sbjct: 886 EMNSSQGGLFGDAGEDLPAPRLPMPEDWLPIERLTEEHKAIGFYLSGHPLDDYMGALKRK 945 Query: 979 GIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I E +G I ++A V KQ +K+ KG+R + ++P YE F Sbjct: 946 NILTLHELEQKAQGGKIIAKIAGSVSGKQVRKSAKGNRFAFAQLTDPTGAYEVTIF 1001 >gi|294084089|ref|YP_003550847.1| DNA polymerase III subunit alpha [Candidatus Puniceispirillum marinum IMCC1322] gi|292663662|gb|ADE38763.1| DNA polymerase III, alpha subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 1153 Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/1049 (47%), Positives = 677/1049 (64%), Gaps = 44/1049 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL++H++YSL E L + N+ ++ D QPA AITDTNN+F ALEFS+ G+QP Sbjct: 4 NFVHLRLHTAYSLAESTLRIKNLARLVSEDAQPAAAITDTNNMFGALEFSKAMVNVGVQP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G QL+I +QG +VLL GY L L+S L + + Sbjct: 64 IMGAQLNI-------TDSQGTG------EVVLLAQNETGYVNLSHLLSDALLNSEANANP 110 Query: 130 RICLSWLQEIGTEGLIMLTGG-SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 L +EGLI+L+GG G + +A+ RL + R+Y+ LQR Sbjct: 111 HCNFDALAA-RSEGLILLSGGVMDGFVGLPASDGRQSLAKSRLQALNTIMQGRVYIELQR 169 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H G ++ E +V LA +LPLVATN+ F S + HD L+ + VS+++R + Sbjct: 170 HGLGAEQVAEPILVALADNLDLPLVATNDCRFDSPKMAGPHDALICIGTGRKVSEENRIK 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +P+HY K+ +M +F D+PEA+ NTV IA+RCS++ APILP F D+ E Sbjct: 230 YSPNHYFKSGKQMTDLFVDIPEAIANTVTIAKRCSYMSPERAPILPAFTAGT--DVT--E 285 Query: 308 ENELRNKAVAGLEVRLAQ-------GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L +A GL RL + A AK A+ Y+ RL FEL VI +M F GYFLIV Sbjct: 286 DVALARQAEDGLAHRLERYVYSDDMDAAAKADIAKPYQDRLAFELGVINQMGFPGYFLIV 345 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFIQWAK IPVGPGRGSGAGSV A+AL+ITD+DPLR+ LLFERFLNP+R+SMPDFDI Sbjct: 346 ADFIQWAKNAAIPVGPGRGSGAGSVVAWALSITDLDPLRWGLLFERFLNPERVSMPDFDI 405 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQDRRDEVI YVQ KYG +RVAQIITFGSLQA+AALRDVGR L+MPY QVDR+ KLIP Sbjct: 406 DFCQDRRDEVITYVQEKYGKDRVAQIITFGSLQARAALRDVGRVLEMPYGQVDRIAKLIP 465 Query: 481 NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 N+PA+P ++ QA+ ++ R R D V L+++S LEGLYRHASTHAAG+VIGDRPL Sbjct: 466 NNPANPTTIAQALESEADLRAERNQDEQVADLIDMSLSLEGLYRHASTHAAGLVIGDRPL 525 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + LVP+YRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ++++F+AQRG++++L Sbjct: 526 ADLVPLYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQRAVEFIAQRGIEINLD 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ +L+ T+G+FQLES+GMR L G++PD EDIIA+V+LYRPGP++NI Sbjct: 586 AIPLDDIKTFEMLSAGDTVGVFQLESAGMRDVLRGLKPDRFEDIIAVVALYRPGPMENIP 645 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y RK+ +I +HP ++P+L ET G++IYQEQV Q AQ+L+GY+L AD+LRRAMGK Sbjct: 646 DYVARKHDPSQITYMHPDLEPVLNETYGIMIYQEQVQQAAQVLAGYTLGAADILRRAMGK 705 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KIK EMD Q+ F++GA N IS+ +A +IF+ +A FA YGFNKSHAAAYA++SYQTA++ Sbjct: 706 KIKAEMDAQRATFVNGAVDNAISEKLASDIFDTIAAFAGYGFNKSHAAAYALVSYQTAYL 765 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--------G 831 K +YPVEFLAASM L+ N EK+ F Q+ +Q I I PP VN F+V Sbjct: 766 KANYPVEFLAASMALDAGNTEKLAVFRQECQQKGITIKPPCVNHSFAGFRVEPDNNHPES 825 Query: 832 DN---RIYYSLAAIKGVGT-TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 DN I Y+L AIK VG AR + A F+ L DF R+ NRR +E+LV Sbjct: 826 DNDKLAIRYALGAIKNVGAEAMARLTEKRDAGSKFEHLMDFLERLPRDASNRRQMENLVR 885 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGALDC +R +LL ++D + +A+ + +++ + N+F + + + + L Sbjct: 886 AGALDCLHANRHELLNNIDYLLAHAETLRRDKESNQNNLFGDDTDSMASSLRLTPCEDWV 945 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN----NIRLAAMVVS 1003 R + E LG Y S HPLD Y L K+ I E I + LA + Sbjct: 946 PMDRLKEEFDALGLYLSAHPLDGYGNQLAKLRIITASELNRQIEAGRPPQRVNLAGSITG 1005 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 KQ + +++G++ +V F++ +E FF Sbjct: 1006 KQVRVSQRGNKFAFVQFTDQTGVFETTFF 1034 >gi|88607188|ref|YP_505564.1| DNA polymerase III, alpha subunit [Anaplasma phagocytophilum HZ] gi|88598251|gb|ABD43721.1| DNA polymerase III, alpha subunit [Anaplasma phagocytophilum HZ] Length = 1127 Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/1028 (46%), Positives = 678/1028 (65%), Gaps = 37/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLLEG + + +++ + PA+A+TD+ NLF +LEFS A AG+QPI Sbjct: 5 FVHLRTHSDYSLLEGMIKVESLVAMCVEQKMPAVALTDSGNLFGSLEFSDCAARAGLQPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + ++ N + +I+LL +AEG+ L L+S + Q ++ R Sbjct: 65 IGCNIMVEESGN------------NLGNILLLAKSAEGFANLTNLISNGFNNSQLEKINR 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L ++ GLI LTGG + RA N + + L + ++F D +YV LQRH Sbjct: 113 VNIDDLLKLNG-GLIALTGGHDDILARALLNNGDDL--RALDSILQVFKDNVYVELQRH- 168 Query: 191 GYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G + RE + +++ AY +PLVATN+ F D++AHD+L ++ V Q+DR R+ Sbjct: 169 GLNGQREVEELLIRFAYERNIPLVATNDVFFACRGDFQAHDILSCISTGAYVVQEDRHRL 228 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 TP+HY K SEM +FSD+PEA+ NT IA+RCSFI +V P LP F C + + E E Sbjct: 229 TPEHYFKTASEMYELFSDVPEAVLNTSLIAQRCSFIQEVRKPQLPHF---PCFEGRTEAE 285 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL A+AGLE+RL I +D Y +RL +EL V+ M++SGYFLIVADFI+W+ Sbjct: 286 -ELTECALAGLEIRLKSKGIGDDEEQRDLYLKRLKYELGVVISMEYSGYFLIVADFIRWS 344 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R Sbjct: 345 KQNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPDRVSMPDFDIDFCQEKR 404 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D+VI YV+ KYG+ VA IITFG LQA+A LRDVGR +Q+PY+Q+DR+CK+IP+DP PV Sbjct: 405 DKVIEYVKEKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYAQIDRICKMIPHDPISPV 462 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L +AI D + + D +V +L+EIS KLEGLYRHAS HAAGIVI D+PL VP+Y Sbjct: 463 TLLEAIEMDQNLKAEQENDETVAKLIEISLKLEGLYRHASVHAAGIVICDQPLENFVPLY 522 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D S LP+TQ+NMK++EKAGL+KFDFLGL+TLT++ + + RG +++LS IP +D Sbjct: 523 YDKSSSLPITQYNMKYVEKAGLVKFDFLGLRTLTMIDQICSLIRARGEEIELSKIPLNDK 582 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L+ ++G+FQLES+GMR+A+ ++PD I+DIIAL+SLYRPGP++NI +Y +RK+ Sbjct: 583 KTYEMLSAGDSIGVFQLESAGMREAISKLRPDSIQDIIALISLYRPGPMNNIAIYISRKH 642 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G E+ IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL EAD+LRRAMGKKIKEEMD Sbjct: 643 GLEEPDYIHPMLECVLKETFGVIIYQEQVMEIARILAGYSLGEADLLRRAMGKKIKEEMD 702 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +Q++ F+ GA NGI ++ A IF+L+AKFA YGFNKSHAAAYA+IS+QTA+++ +Y E Sbjct: 703 RQRQDFVDGAVSNGIEESKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLRANYTKE 762 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F ASM L++D+ +K+ CQ A+ I +MPP +N +F V N I Y L A+K VG Sbjct: 763 FFTASMNLDIDDKDKLGLLCQQAKMCGIDVMPPDINLSSAEFTVSGNSIRYGLGALKNVG 822 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 TA I+ + + + DF V + +R LESL+ +G+LD +R QL SL Sbjct: 823 QLTAHEILPVEGGR-YSDIWDFAGNVRIRSPLKRTLESLIKSGSLDGIHPNRRQLFASLG 881 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVRFENEQRVLGFYFS 964 I + NK ++ AH+ FS+K LE+ + E+E +GFY Sbjct: 882 IILNIIE-------NKKVSMDAHQFSLFSEKEEGQLEEVDDWTEDEKIEHEFATIGFYLR 934 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HPL Y+ +L K G++ + S + + + A VVS + ++ R V S+P Sbjct: 935 YHPLSKYEQVLGKFGVR-FVSSTQEEKESGVTKRAGVVSSVKMRSANKERFAIVRVSDPH 993 Query: 1025 KEYEANFF 1032 + F+ Sbjct: 994 GVNDVAFY 1001 >gi|254294080|ref|YP_003060103.1| DNA polymerase III subunit alpha [Hirschia baltica ATCC 49814] gi|254042611|gb|ACT59406.1| DNA polymerase III, alpha subunit [Hirschia baltica ATCC 49814] Length = 1145 Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/1029 (46%), Positives = 662/1029 (64%), Gaps = 25/1029 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+V S+ SLL +++ + + PA+AITD NN+F ALE S+ G+Q Sbjct: 13 PRFVHLRVRSALSLLGSMITIKKLCKWTFENGFPAVAITDDNNMFGALELSETLAPMGVQ 72 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PII L I + N P + L GY+ ++ L ++ +L + Sbjct: 73 PIIAITLHIYDRIN---------PAAEPTELALFAQNEAGYKNMMILTTKGFL-ESPSGG 122 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + L + E +EGLI TGG +G + + + A + LL + F +RLYV LQR Sbjct: 123 TGVYLDDVLE-HSEGLICTTGGGNGEVTQLCAAGDEEGAREYLLKLNEAFPNRLYVELQR 181 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H R + E +V LAY +LPLVATN + F+ ++AHD L+ +A ST VS +DRP+ Sbjct: 182 HGRLTEDKAEELLVDLAYELDLPLVATNEARFIKRAQHKAHDALLCIAGSTYVSVQDRPK 241 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +P+ Y+K EM+++FSDLPEA+ENT EIARRCS+ PILP F + D E Sbjct: 242 ASPEQYMKTEEEMINLFSDLPEAIENTCEIARRCSYRPAWRKPILPNFTGDDGD-----E 296 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL +A GL++RL+ G + + Q Y RLDFELN+I +M F GYFLIV+DFI+WA Sbjct: 297 GEELDRQAREGLKMRLSSGILYE--EEQVYWDRLDFELNIIRQMGFPGYFLIVSDFIKWA 354 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+++IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQDRR Sbjct: 355 KEHDIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQDRR 414 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI Y + KYG +RVA IIT+G+LQAKA +RDVGR Q+P+ QVD+L KLIP +PA+P Sbjct: 415 HEVIEYTKRKYGADRVAMIITYGTLQAKAVIRDVGRVHQLPFGQVDKLSKLIPFNPANPP 474 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ AI + +F++ + V L+E + +LEGLYR+A THAAG+VIGDRPL +L P+Y Sbjct: 475 TLQEAIDGEPKFKQEMRENEDVRNLVETALELEGLYRNAGTHAAGVVIGDRPLVELSPLY 534 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 +D +SD+P TQFNMKW E GL+KFDFLGLKTLT++Q++L F+ G ++ FDD Sbjct: 535 KDPKSDIPATQFNMKWAEHNGLVKFDFLGLKTLTVIQRALKFVISEGKQLTEKWHTFDDE 594 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 E Y LL++ TLG+FQLES+GMR L ++PDCIEDIIAL+SLYRPGP+ NI Y RK Sbjct: 595 EAYKLLSSGETLGVFQLESTGMRDTLRKVKPDCIEDIIALISLYRPGPMKNIDTYVARKE 654 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+E+I +H + P+L+ET GVI+YQEQVM+IAQ+L+GYSL EAD+LRRAMGKK EEM Sbjct: 655 GREEIDYLHDDLKPVLEETYGVIVYQEQVMRIAQILAGYSLGEADLLRRAMGKKKPEEML 714 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 KQK RF+ GA+K +SK A IFEL+ +FA YGFNKSHAAAYAVI+YQTA++K +PVE Sbjct: 715 KQKVRFLEGAAKKDVSKERAEFIFELVNEFAGYGFNKSHAAAYAVIAYQTAYLKAKHPVE 774 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 FLA SM+L++ N EK+ F Q+ ++ I ++ P + DF V D +IYY+L A+KGVG Sbjct: 775 FLAGSMSLDLTNTEKLAAFFQETKRLKIPVVTPDITLCNADFDVRDQKIYYALGAVKGVG 834 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + A +KPF+ L DF RVD +++N+RV ++L G D +R + ++ + Sbjct: 835 KEAMLDVERARNEKPFEDLFDFAERVDPRQINKRVYQALSKCGGFDQLEKNRAKAFEASE 894 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + + ++R + ++F E + L K + +S + E +GFY SGH Sbjct: 895 MLAAMSNAANRDRNSNQNSLFGDEPPM---RPKLPKAAPWSSEKILDYELSSVGFYLSGH 951 Query: 967 PLD--VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 PLD + P ++ + + R + + V ++ G + ++T S+P+ Sbjct: 952 PLDDILEGPARERIVLSSQMMELGRERAALEMIGVVKVRVEKPSMSGGGKFAYITLSDPS 1011 Query: 1025 KEYEANFFP 1033 EYE P Sbjct: 1012 GEYELFVAP 1020 >gi|330994074|ref|ZP_08318004.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1] gi|329759020|gb|EGG75534.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1] Length = 1144 Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/1038 (46%), Positives = 671/1038 (64%), Gaps = 35/1038 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+YSL +GA+ + ++ + PA+AITDT N+F ALEFSQ G+QPI Sbjct: 6 FVHLRVHSAYSLSQGAIRVPELVALAHDMRMPAVAITDTGNMFGALEFSQYCGKKGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGCQL + ++ P +P+ +VLL AEG L + +S L Sbjct: 66 IGCQLGL----------PSRSDKPGMPAEHVVLLARNAEGLANL-QFLSSAGFLQTVTDE 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + L L E GL +LTGGS GP+ + A + + +G + V L R Sbjct: 115 PTVTLDLLCERAG-GLFLLTGGSRGPLFHMLAEGQEREATRFMERLHAAYGRYMAVELHR 173 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + +R E ++ +A LPLVATN F + YEAHD L+ +A ++++DR R Sbjct: 174 HGQAAERAVEPGMIAMADRMGLPLVATNECFFPKPDMYEAHDALLCIAQGRTMAERDRWR 233 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--K 305 VTP+H+ K M +F+DLPEA +NT+EIAR C+ ++ P+LP C +Q K Sbjct: 234 VTPEHWFKPAEAMRELFADLPEACDNTLEIARLCAIKVETCKPLLPM-----CPKVQPGK 288 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E+ LRN A GL RL++ + + + Y +RL FEL++IA M F GYF+IVADFIQ Sbjct: 289 TEDETLRNMARTGLARRLSRMDVDEETR-RKYEERLAFELDIIANMGFPGYFMIVADFIQ 347 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQD Sbjct: 348 WAKEHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQD 407 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVIRYV+N+YG +RVAQIITFG LQA+AA+RDVGR L +P+ V+R+ +LIPN+PA Sbjct: 408 RRDEVIRYVRNEYGADRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNRVAELIPNNPAQ 467 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 PV+L QAI + R +E R D ++ RLLEI Q+LEGL+RHASTHAAG+VIGDR L +LVP Sbjct: 468 PVTLKQAIEGEPRLQEMRDEDEAIRRLLEIGQQLEGLFRHASTHAAGVVIGDRELVELVP 527 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 +YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ+++ FL GV VDLS +P D Sbjct: 528 LYRDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRAVQFLHGMGVAVDLSALPLD 587 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L T G+FQ E +GMR L+ M+P +ED+IA V+LYRPGP+ NI Y R Sbjct: 588 DPLTYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRR 647 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G E H I +L+ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+EE Sbjct: 648 KHG-EAWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIREE 706 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MD+Q+E F GA K GI + A +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK ++P Sbjct: 707 MDRQREIFTEGAMKRGIEREKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHP 766 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRIYYS 838 V F+AA M+L + +K+ Q+A + I ++PP +N DF V G I Y+ Sbjct: 767 VAFIAACMSLAREKTDKLAGLRQEADRLGIPLLPPDINASGADFTVEKLPDGGGYAIRYA 826 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 LAA+K VG + ++ D+PF LED +R+D +++N+ LE+L AGA D +R Sbjct: 827 LAAVKKVGLGAMQSLVAVRGDRPFVDLEDLAARLDPRQVNKMQLENLARAGAFDTILPNR 886 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQ 956 + + + + + AQ + + +F + + L V + R E Sbjct: 887 ARACGAAETVMRRAQANAQQAASGQIGLFGGGGDGPAAREPLRMPRVADWPEFERLNMEA 946 Query: 957 RVLGFYFSGHPLDVYKPILRKMG-IKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSR 1014 +GF+ +GHPLD Y P++R++G ++ A G +++A VV ++++ TR G++ Sbjct: 947 DAIGFHLTGHPLDSYGPLMRRLGAVRATGLEAAAQAGIVRVKIAGCVVDRKERPTRTGNK 1006 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + WV S+ + E FF Sbjct: 1007 MAWVRLSDASGGCEITFF 1024 >gi|296536131|ref|ZP_06898260.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis ATCC 49957] gi|296263543|gb|EFH10039.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis ATCC 49957] Length = 1147 Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/1043 (46%), Positives = 666/1043 (63%), Gaps = 38/1043 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS+YSL EGA+ + + A PA+A+TDT N+F ALEFS+ G+QP Sbjct: 3 SFVHLHVHSAYSLAEGAIKAEKLAELAKAGGMPAVALTDTANMFGALEFSKACSGKGVQP 62 Query: 70 IIGCQLDI------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 I+GCQL + D + L++ P P +V L AEG + + L S+ +L D Sbjct: 63 IMGCQLFLTRGAADDRPEVLRLP-----PDP----VVALAMDAEGLENVQRLSSQGFLRD 113 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSS-GPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 + L L++ G+ +LTG S+ GP+ R A + L K+ FG DR Sbjct: 114 DPSGRPTVTLELLKQHAA-GVTLLTGPSTTGPLGRLLLEGRRDAALRLLEELKESFGGDR 172 Query: 182 LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 L V L RH +R + +V LA LPL A N+ F E YEAHD L+ +A + Sbjct: 173 LVVELTRHGLEIERALDPALVALADAAGLPLAAANDIYFSKPEMYEAHDALLCIAEGRTL 232 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++ DR RVTP+H+ K+ M ++F+DLPEA +NT+ IARRC+ + + P LP C Sbjct: 233 AEPDRRRVTPEHFFKSAEAMRTLFADLPEACDNTLAIARRCAIMAENRKPELPI-----C 287 Query: 301 DDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 +Q E +R+ A GLE RL A + YR RL+FEL++I +M FSGYFL Sbjct: 288 PKVQPGMTEAETVRDMAKRGLEARLDAQATPEAERPT-YRTRLEFELDIIEKMGFSGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFIQWAK+ IPVGPGRGSGAGSV A+AL ITD+DPLRF LLFERFLNP+R+SMPDF Sbjct: 347 IVADFIQWAKQQGIPVGPGRGSGAGSVAAWALLITDLDPLRFGLLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFCQDRRDEVI+YV+ +YG +RVAQIITFG LQAKA +RDVGR + MPY QV+++ +L Sbjct: 407 DIDFCQDRRDEVIQYVRREYGEDRVAQIITFGRLQAKAVVRDVGRVMGMPYGQVNKIAEL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP +PA PV+L QA+ + R +E R AD VDRL+E + LEGLYR+ASTHAAG+VIG + Sbjct: 467 IPFNPAKPVTLQQALDGEPRLQEMRQADEMVDRLMETALVLEGLYRNASTHAAGVVIGRK 526 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 PL V +YRD RSD+ VTQ++MK++E A L+KFDFLGLKTLT+LQ++++ LA +G+ +D Sbjct: 527 PLIDTVALYRDPRSDMLVTQYSMKYVENASLVKFDFLGLKTLTVLQRAVEILAGQGITID 586 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L+ +P DD +TY +L + G+FQ E GMR+ L M+PD ED+IA VSLYRPGP+ N Sbjct: 587 LAALPLDDAKTYEMLARGDSAGVFQFEGQGMRECLRMMRPDRFEDLIAAVSLYRPGPMAN 646 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y RK+G E +HP + +++ET G+++YQEQVMQI+Q ++GYSL AD+LRRAM Sbjct: 647 IPAYCARKHG-EAWEPVHPAMRHLVEETYGILVYQEQVMQISQDVAGYSLGGADLLRRAM 705 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKKI+ EM+ Q++ F+ GA KNG+ + A IF+L+ KFA+YGFNKSHAAAYA+++Y TA Sbjct: 706 GKKIRSEMEAQRKIFVDGAVKNGVPEGKAGEIFDLMEKFAEYGFNKSHAAAYALVAYHTA 765 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832 ++K ++PV FLAASMTL++D EK+ Q+A + I ++PP VN +FKV G Sbjct: 766 YLKANHPVAFLAASMTLDLDKTEKLANHMQEASRLGIPVLPPDVNRSAAEFKVETMEDGR 825 Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I ++LAA+K VG + ++ A A PF S+ +F RVD K LN+ LE+L AGA Sbjct: 826 QAIRFALAAVKRVGMQAMQDLVRARDAKGPFRSIAEFAGRVDPKLLNKMQLENLARAGAF 885 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R ++ + + + + AQ + R + +F + + + L R Sbjct: 886 DSLEKNRARMTMAAEVVLRRAQSSAEERNSSQIGLFGGGD-SRPEPLRLPNVPDWPELER 944 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKT 1009 E +GF+ S HPLD YK +LRK+ + + A +++A VV+ +++ T Sbjct: 945 LTQEAEAVGFHLSAHPLDTYKEVLRKLRVTSIAQLQAKAEAGAAVLKIAGTVVNSKERTT 1004 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 R GSR+ W+ S+ + E F Sbjct: 1005 RTGSRMAWLKLSDSSGSTEVTLF 1027 >gi|162148792|ref|YP_001603253.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|161787369|emb|CAP56964.1| putative DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus PAl 5] Length = 1142 Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/1034 (47%), Positives = 661/1034 (63%), Gaps = 29/1034 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+YSL +GA+ + I + PA+AITDT NLF ALEFSQ G+QPI Sbjct: 6 FVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSGKGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGCQ+ + +++ K P P +VLL G L L S+ +L + Sbjct: 66 IGCQVGLPPRND-------KPGAPAEP-VVLLAQDETGLMNLQYLSSQGFLTGDTAEPT- 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L L E EGLI+LTGG+ GP+ R + L FGDRL V L RH Sbjct: 117 VTLDVLCE-RAEGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGDRLAVELHRHG 175 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ E ++ LA LPLVATN F E YEAHD L+ +A ++++DR RVT Sbjct: 176 LPVEKAVEPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAERDRWRVT 235 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK--EE 307 P+H+ K + M +F+DLPEA +NT+ IARRC+ ++ P+LP C +Q E Sbjct: 236 PEHWFKPPAMMRDLFADLPEACDNTLAIARRCAVRVETRKPLLP-----VCPKVQPGATE 290 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E LR A GL RLA+ + Q YR RL FEL++IA+M F GYF+IVADFIQWA Sbjct: 291 EQTLRAMAEDGLARRLARMDMDDATR-QVYRDRLTFELDIIAKMGFPGYFMIVADFIQWA 349 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRR Sbjct: 350 KAHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRR 409 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L +P+ V+++ +LIPN+PA PV Sbjct: 410 DEVIRYVRGEYGPDRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNKVAELIPNNPAKPV 469 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L QAI + R +E R D ++ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +LVP+Y Sbjct: 470 TLKQAIDGEPRLQEMRDTDEAIRRLMEIALQLEGLYRHASTHAAGVVIGDRQLVELVPLY 529 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++ FL V VDL+ +P DD Sbjct: 530 RDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRACQFLKGLDVTVDLTTLPLDDA 589 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY +L T G+FQ E +GMR L+ M+P +ED+IA V+LYRPGP+ NI Y RK+ Sbjct: 590 PTYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRRKH 649 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G E H I +L+ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ EMD Sbjct: 650 G-EAWEPPHEEIRSILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRAEMD 708 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 KQ+E F GA GI A +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK ++PV Sbjct: 709 KQREIFTEGAVGRGIDPEKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHPVP 768 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR--IYYSLAA 841 FLAA M+L + +K+ Q+A + I ++PP +N DF V D R I Y+LAA Sbjct: 769 FLAACMSLAREKTDKLAALRQEAERLGIPVLPPDINASGPDFTVERLADGRLGIRYALAA 828 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 +K VG ++ + D+PF L D +RVD ++LN+ +E+L AGA D +R + Sbjct: 829 VKKVGFAAMEALVASRGDRPFADLSDLAARVDPRQLNKMQIENLAKAGAFDTVVPNRALV 888 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRVLG 960 + + + + A + + +F T + + + L + R E +G Sbjct: 889 AAAAETVLRRANTKAQEAASGQIGLFGGGGPTPAPEPLRLPDVTDWPEFERLGMEAEAIG 948 Query: 961 FYFSGHPLDVYKPILRKMG-IKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWV 1018 F+ + HPLD Y +LR++G ++ A G +++A VV ++++ TR GS++ WV Sbjct: 949 FHLTAHPLDSYGLLLRRLGAVRATALEAAAQAGLTRVKIAGCVVDRKERPTRTGSKMAWV 1008 Query: 1019 TFSEPAKEYEANFF 1032 S+ + E F Sbjct: 1009 RLSDSSGGCEVTLF 1022 >gi|209545459|ref|YP_002277688.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|209533136|gb|ACI53073.1| DNA polymerase III, alpha subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 1142 Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/1034 (47%), Positives = 661/1034 (63%), Gaps = 29/1034 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+YSL +GA+ + I + PA+AITDT NLF ALEFSQ G+QPI Sbjct: 6 FVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSGKGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGCQ+ + +++ K P P +VLL G L L S+ +L + Sbjct: 66 IGCQVGLPPRND-------KPGAPAEP-VVLLAQDETGLMNLQYLSSQGFLTGDTAEPT- 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L L E EGLI+LTGG+ GP+ R + L FGDRL V L RH Sbjct: 117 VTLDVLCE-RAEGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGDRLAVELHRHG 175 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ E ++ LA LPLVATN F E YEAHD L+ +A ++++DR RVT Sbjct: 176 LPVEKAVEPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAERDRWRVT 235 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--KEE 307 P+H+ K + M +F+DLPEA +NT+ IARRC+ ++ P+LP C +Q E Sbjct: 236 PEHWFKPPAMMRDLFADLPEACDNTLAIARRCAVRVETRKPLLP-----VCPKVQPGATE 290 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E LR A GL RLA+ + Q YR RL FEL++IA+M F GYF+IVADFIQWA Sbjct: 291 EQTLRAMAEDGLARRLARMDMDDATR-QVYRDRLTFELDIIAKMGFPGYFMIVADFIQWA 349 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDRR Sbjct: 350 KAHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRR 409 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L +P+ V+++ +LIPN+PA PV Sbjct: 410 DEVIRYVRGEYGPDRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNKVAELIPNNPAKPV 469 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L QAI + R +E R D ++ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +LVP+Y Sbjct: 470 TLKQAIDGEPRLQEMRDTDEAIRRLMEIALQLEGLYRHASTHAAGVVIGDRQLVELVPLY 529 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++ FL V VDL+ +P DD Sbjct: 530 RDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRACQFLKGLDVTVDLTTLPLDDA 589 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY +L T G+FQ E +GMR L+ M+P +ED+IA V+LYRPGP+ NI Y RK+ Sbjct: 590 PTYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRRKH 649 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G E H I +L+ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ EMD Sbjct: 650 G-EAWEPPHEEIRSILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRAEMD 708 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 KQ+E F GA GI A +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK ++PV Sbjct: 709 KQREIFTEGAVGRGIDPEKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHPVP 768 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR--IYYSLAA 841 FLAA M+L + +K+ Q+A + I ++PP +N DF V D R I Y+LAA Sbjct: 769 FLAACMSLAREKTDKLAALRQEAERLGIPVLPPDINASGPDFTVERLADGRLGIRYALAA 828 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 +K VG ++ + D+PF L D +RVD ++LN+ +E+L AGA D +R + Sbjct: 829 VKKVGFAAMEALVASRGDRPFADLSDLAARVDPRQLNKMQIENLAKAGAFDTVVPNRALV 888 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRVLG 960 + + + + A + + +F T + + + L + R E +G Sbjct: 889 AAAAETVLRRANTQAQEAASGQIGLFGGGGPTPAPEPLRLPDVTDWPEFERLGMEAEAIG 948 Query: 961 FYFSGHPLDVYKPILRKMG-IKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWV 1018 F+ + HPLD Y +LR++G ++ A G +++A VV ++++ TR GS++ WV Sbjct: 949 FHLTAHPLDSYGLLLRRLGAVRATALEAAAQAGLTRVKIAGCVVDRKERPTRTGSKMAWV 1008 Query: 1019 TFSEPAKEYEANFF 1032 S+ + E F Sbjct: 1009 RLSDSSGGCEVTLF 1022 >gi|73666820|ref|YP_302836.1| DNA polymerase III alpha subunit [Ehrlichia canis str. Jake] gi|72393961|gb|AAZ68238.1| DNA polymerase III, alpha subunit [Ehrlichia canis str. Jake] Length = 1123 Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/1040 (46%), Positives = 681/1040 (65%), Gaps = 60/1040 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+ HS YSLL G + + ++++ PA+A+TD+ NLF +LEFS A +GI Sbjct: 2 SQIFVHLRSHSDYSLLHGMVKIESLVNLCVQHNMPALALTDSGNLFGSLEFSDCASNSGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 QPIIGC N+ ++ G + ++LLV GY ++ LVS + DQ + Sbjct: 62 QPIIGC--------NIMISYNGDN----IGELILLVKNQVGYSNIVNLVSNSFRNDQSGK 109 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVN 185 RI L+ L + +G+I+LTGG G + + N + +K LL FK LYV Sbjct: 110 INRIDLNTLISL-KDGIIVLTGGHDGFLAQLLLGNVIDYGIIDKLLLAFKG----NLYVE 164 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQRH ++ E +++ AY ++PLVATN+ LF ED+ AHDVL ++ ++Q+D Sbjct: 165 LQRHNIEEEKLIERTLIKFAYEKDVPLVATNDILFARREDFLAHDVLSCISDGNYIAQED 224 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T +HY K+ +EM +F D+PEA+ NTV IA+RCSF+ ++ P+LP F C Sbjct: 225 RKMFTEEHYFKSSNEMHELFVDIPEAISNTVLIAQRCSFMPEIRKPMLPHF---PCSS-G 280 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E EL ++A+ GL RL ++K Y +RL +EL++I M ++GYFLIV+DFI Sbjct: 281 RNESQELISQAIDGLNSRLKDSNLSKE-QTSKYYERLHYELDIIISMDYAGYFLIVSDFI 339 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 W+K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ Sbjct: 340 CWSKRNDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQ 399 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + RD VI YV+ KYG+ VA IITFG LQAKA LRDVGR +QMPY QVDR+CK+IP++P Sbjct: 400 EGRDHVIEYVRKKYGY--VAHIITFGKLQAKAVLRDVGRVMQMPYFQVDRICKMIPHNPV 457 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 PV+L +AI D ++ R D +V +LLEIS KLEGLYRH S HAAGIVI DR L +L+ Sbjct: 458 RPVTLSEAIEMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRRLEELL 517 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+Y D S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ + + G VD+S IP Sbjct: 518 PLYYDNVSFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVNNGGQNVDISRIPL 577 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D +TY +L+ ++G+FQLESSGMR+ + ++PD I DIIAL+SLYRPGP+DNI +Y Sbjct: 578 NDKKTYEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNISIYIA 637 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G EK IHP+++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKE Sbjct: 638 RKHGFEKPDYIHPILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKE 697 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD Q+ FISGA NGI + A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y Sbjct: 698 EMDNQRRAFISGAINNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANY 757 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAI 842 +EF ASM L++ + +K++ C A+ I+I+PP +NT V F + G + I Y+L A+ Sbjct: 758 TLEFFTASMNLDITDKDKLEMLCHQAKLHGIKILPPDINTSKVFFTIEGSSSIRYALGAL 817 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 K VG +A+ I++ D + + DF RV +K +++R+LES++ AG LD +R QL Sbjct: 818 KNVGQHSAKEIVD---DIAYKDIWDFIDRVSTKCVHKRILESIIKAGVLDSIHSNRKQLF 874 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +S + + +E N+ N + N F AH K + +D T E+ + +NE Sbjct: 875 ES---VFLFLDIIEYNKYNANFNQFSLFTDRAHYKLSETDDWTKEE--------KLDNEF 923 Query: 957 RVLGFYFSGHPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 +GFY + HP++ YK +L K+ G Y++ A N R+ ++ S K R SR Sbjct: 924 SSIGFYLNHHPMENYKCLLEKLNIGFINYDDRSAY----NNRIVGIISS---VKVRSASR 976 Query: 1015 --IGWVTFSEPAKEYEANFF 1032 VT S+P +E F+ Sbjct: 977 DKFAVVTLSDPYNIHEIAFY 996 >gi|58038565|ref|YP_190529.1| DNA polymerase III subunit alpha [Gluconobacter oxydans 621H] gi|58000979|gb|AAW59873.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H] Length = 1140 Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/1034 (46%), Positives = 657/1034 (63%), Gaps = 31/1034 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS+YSL +GA+ + ++ A + PA+A+TD+ NLF ALEFS + G+QPI Sbjct: 6 FVHLRNHSAYSLSQGAIRIPELVSLAAKNGMPAVALTDSGNLFGALEFSLYCRSNGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GCQ+ + + T G P +V+L EG L +++S L+ Sbjct: 66 VGCQISLPP----RSTKPGAMSEP----LVVLARNEEGLANL-QILSSEGFLNGDPADPS 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + + +L + GL +LTGG+ GPI++ A+ L ++ F + V L R Sbjct: 117 VAVDFLCQHAA-GLFLLTGGNRGPINKLILEEQKSEAQALLSRLEEAFRGNIAVELNRFG 175 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ ES ++ +A ++PLVATN F E +EAHD L+ +A ++++DR V+ Sbjct: 176 EAGEQEVESVLIPMADQMDIPLVATNECFFPKPEMHEAHDALLCIAQGRTIAEEDRWHVS 235 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK--EE 307 P + K +EM ++F DLPEA +NT+ IA++C+ P+LP C +++ E Sbjct: 236 PQAWFKTPAEMRAVFHDLPEACDNTLIIAQKCAVAACTRKPLLPI-----CPKVREGSTE 290 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E LR A GLE RL AI G + Y +RL EL++IARM F GYFLIVADFIQW Sbjct: 291 EETLRAMAWEGLEKRL--DAINAGEEKRKLYSERLQVELDIIARMGFPGYFLIVADFIQW 348 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK ++IPVGPGRGSGAGS+ AYALTITDIDP+ F LLFERFLNP+R+SMPDFDIDFCQDR Sbjct: 349 AKAHDIPVGPGRGSGAGSLVAYALTITDIDPIPFGLLFERFLNPERVSMPDFDIDFCQDR 408 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVIRYV+ +YG RVAQIITFG LQAKAA+RDVGR L +PY V+R+ +LIPN+PA P Sbjct: 409 RDEVIRYVREEYGGSRVAQIITFGKLQAKAAVRDVGRVLGLPYGMVNRVAELIPNNPAKP 468 Query: 487 VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 VSL AI + R +E R +D S+ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +LVP+ Sbjct: 469 VSLSDAIEGEPRLQEMRDSDESLKRLMEIALQLEGLYRHASTHAAGVVIGDRELVELVPL 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+L++ LDFL ++G+ VDLS IP DD Sbjct: 529 YRDPKSDMLVTQYNMKYVEQAGLVKFDFLGLTTLTILKRGLDFLKEQGITVDLSRIPLDD 588 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ +L T G+FQ E +GMR L+ M +ED+IA VSLYRPGP+ NI Y RK Sbjct: 589 AKTFEMLAKGDTAGVFQFEGAGMRDMLKQMAASRLEDLIAGVSLYRPGPMANIPDYCRRK 648 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G E H I +L+ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI EM Sbjct: 649 HG-EPWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIAAEM 707 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +KQ+ F GA+ GI + AV +F+L+A+FADYGFNKSHAAAYA++SYQTAWMK ++PV Sbjct: 708 EKQRAIFTEGATARGIPQEKAVEVFDLMARFADYGFNKSHAAAYALVSYQTAWMKANHPV 767 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLA 840 FLA M+L + +K+ CQ+AR+ NI ++P +N DF + G I Y+L+ Sbjct: 768 AFLAGCMSLAREKTDKLAALCQEARRMNIPVLPVDINKSLADFSIETLEDGRQGIRYALS 827 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIK VG + ++ D+PF L DF R D K LN+ LESL AGA D R Sbjct: 828 AIKRVGAAAMQSVVACRGDRPFQDLTDFAERCDPKSLNKIQLESLAKAGAFDSLLKERHI 887 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + S D + + AQ + + +F G + + L + R E +G Sbjct: 888 VFSSADILLRRAQARAQEQQMGQAGLFGG-AGQEREILRLNEGRPWPDFERLSLEASAIG 946 Query: 961 FYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 F+ S HPLD Y+ +LR++G+ E+ A +++A VV ++++ TR G ++ WV Sbjct: 947 FHMSAHPLDAYRSVLRRLGVTPSNALENAAKTGTTRVKIAGCVVDRKERPTRTGKKMAWV 1006 Query: 1019 TFSEPAKEYEANFF 1032 S+ E F Sbjct: 1007 NLSDSGGGCEVTLF 1020 >gi|326404871|ref|YP_004284953.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301] gi|325051733|dbj|BAJ82071.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301] Length = 1139 Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/1033 (46%), Positives = 664/1033 (64%), Gaps = 30/1033 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+YSL EGA+ + I + PA+AITDT+NLF ++EFSQ G+QPI Sbjct: 6 FVHLRVHSAYSLSEGAIKPDKIATLARDNAMPAVAITDTSNLFGSIEFSQACMGKGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +GCQ+ + +T P +P +VLL A G+ L +L SR +L + Sbjct: 66 VGCQIGL-----------ARTDLPRLPPDPLVLLAKDATGFANLSKLSSRSFLDTEPGLR 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 +I L L++ EGL +LTGG GP+ R A + L + F DRL V L+R Sbjct: 115 PQISLDTLRD-HHEGLFLLTGGRFGPVGRLLGDGQRPEAARLLAALAETFPDRLAVELER 173 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +R E ++ LA LPLVATN F +E +EAHD L+ +A V+S+ +R R Sbjct: 174 HDLPTERAVEPGLITLADEAGLPLVATNECFFATETMHEAHDALLCIAEGRVLSEAERRR 233 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 VTP H+ K +EM F+DLP+A +NT+ IARRC+ P+LP I + D E Sbjct: 234 VTPHHWFKPAAEMRRRFADLPDACDNTLAIARRCAIAAPTRKPLLP--ICPKVRDGATEA 291 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E LR A GL +RLA A+ YR+RL EL +I +M F GYFLIVADFIQWA Sbjct: 292 ET-LRAMAEEGLALRLAAMNADAATAAK-YRERLALELGIIEQMGFPGYFLIVADFIQWA 349 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K IPVGPGRGSGAGS+ A+AL ITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQ+RR Sbjct: 350 KSQGIPVGPGRGSGAGSLAAWALLITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQERR 409 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY QV+++ +++PN+PA P+ Sbjct: 410 DEVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGQVNKVAEIVPNNPAKPI 469 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 L +A+ + R RE R +D SV RL+EI+ ++EGLYRHASTHAAG+VIGDRPL++LVP+Y Sbjct: 470 PLAEAVDAEPRLREMRDSDESVKRLIEIAMQVEGLYRHASTHAAGVVIGDRPLNELVPLY 529 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 +D RSD+ +TQ++MK +E+AGL+KFDFLGL TLT++ ++L+FL G VD++ IP DD Sbjct: 530 KDPRSDMLITQYSMKHVEQAGLVKFDFLGLTTLTIISRALNFLDGLGTPVDIAKIPLDDA 589 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L+ G+FQ E+ G R L M+PD ED+IA V+L RPGP+ NI Y RK+ Sbjct: 590 KTYEMLSRAEAGGVFQFETQGFRDVLRQMRPDRFEDLIAAVALNRPGPMANIPAYCARKH 649 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G E S P I +L ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ EM+ Sbjct: 650 G-ESWESPDPSIHEILSETYGIMVYQEQVMQIAQKMAGYSLGAADLLRRAMGKKIRAEME 708 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q++ F+ GA G ++ AV +F+L+AKFADYGFNKSHAAAYA++SYQTAW++ ++P Sbjct: 709 AQRKIFVEGAVARGTAEAKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWLRANHPAA 768 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAA 841 F+AASM+L N EK+ QDA + I ++PP +N DF V G I Y+LAA Sbjct: 769 FIAASMSLSQANHEKLAALKQDAVRIGIPVLPPDINASAADFTVERQADGTLAIRYALAA 828 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IK VG + ++ A A++PF L DF +RVD + LN+ +E L AGA D +R ++ Sbjct: 829 IKRVGAGAMQDVVRARANRPFADLADFAARVDPRALNKAQIEQLARAGAFDRIDPNRARV 888 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 + + + AQ ++R + N+F + + L + R E +G+ Sbjct: 889 AAGAELLVRRAQAEAESRASGQINLFG--DAAAPEPLPLPDVPDWPAFERLSFEAEAVGY 946 Query: 962 YFSGHPLDVYKPILRKMGI--KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 + + HPLD Y +LR++G+ E+ A ++LA VV ++++ TR GSR+ WV Sbjct: 947 HLTAHPLDAYDTVLRRLGVVPSNLIEARAKAGIGRVKLAGAVVGRKERTTRTGSRMAWVM 1006 Query: 1020 FSEPAKEYEANFF 1032 S+ A +E F Sbjct: 1007 LSDQAGGFEVTLF 1019 >gi|296116516|ref|ZP_06835126.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC 23769] gi|295976728|gb|EFG83496.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC 23769] Length = 1142 Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/1035 (45%), Positives = 666/1035 (64%), Gaps = 29/1035 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F+HL+VHS+YSL +GA+ + I+ + P +AITDT N+F ALEFSQ GIQP Sbjct: 5 NFIHLRVHSAYSLSQGAIRVPEIISLAHEMRMPGVAITDTGNMFGALEFSQYCSKKGIQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGCQ+ + + + K P P +VLL G L L S +L + + Sbjct: 65 IIGCQIALPARCD-------KPGSPAEP-MVLLARNETGLMNLQYLSSAGFLQHETDEPT 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L L + +GL ++TGG+ GP+ R A + L FG + V L RH Sbjct: 117 -VPLDILCD-RADGLFLMTGGTRGPLFRMLAEGLEADAARLLARLHAAFGRYMAVELHRH 174 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R E ++ LA +PLVATN F + YEAHD L+ +A ++++DR RV Sbjct: 175 GLSVERAVEPGMIALADRAGIPLVATNECFFPRPDMYEAHDALLCIAQGRTMAEQDRWRV 234 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--KE 306 TP+H+ K M +F+DLPEA +NT+EIAR C+ ++ P+LP C + Sbjct: 235 TPEHWFKPPHMMRELFADLPEACDNTLEIARLCAIKVETRKPLLP-----VCPKVAPGAT 289 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ LR+ A GLE RLA+ I + Q Y +RL FEL++IARM F GYF+IVADFIQW Sbjct: 290 EDETLRSMARDGLERRLARMDIDEQTR-QTYEERLAFELDIIARMGFPGYFMIVADFIQW 348 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQDR Sbjct: 349 AKAHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDR 408 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L + + V+++ +LIPN+PA P Sbjct: 409 RDEVIRYVRQEYGPDRVAQIITFGKLQARAAVRDVGRVLGLSFGMVNKVAELIPNNPAKP 468 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L QAI + R +E R D ++ RL+EI+ +LEGL+RHASTHAAG+VIGDR L +LVP+ Sbjct: 469 VTLKQAIDGEPRLQEMRDNDETLRRLMEIALQLEGLFRHASTHAAGVVIGDRELVELVPL 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++ FL + GV VDL+ +P DD Sbjct: 529 YRDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRAAQFLERLGVTVDLAALPLDD 588 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 TY +L T G+FQ E +GMR L+ M+P +ED+IA V+LYRPGP+ NI Y RK Sbjct: 589 ALTYDMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRRK 648 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G E H I +L ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ EM Sbjct: 649 HG-EAWEPPHEEIRDILSETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRAEM 707 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+Q+ F GA+K GI AV +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK ++PV Sbjct: 708 DQQRVIFTEGATKRGIEHDKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHPV 767 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLA 840 FLAA M+L + EK+ Q+A + I+++PP +N DF V G+ I Y+LA Sbjct: 768 AFLAACMSLAREKTEKLAALRQEAERLGIKVLPPDINASDADFTVEKLPDGEYGIRYALA 827 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 A+K VG + + ++ ++PF + D +R+D + +N+ LE+L AGA D +R Q Sbjct: 828 AVKKVGLSAMQALVAVRGERPFADMTDIAARIDPRNVNKMQLENLARAGAFDTILPNRAQ 887 Query: 901 LLQSLDNIQKYAQ-WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 +++ + + AQ ++ + + + T + + L R E + Sbjct: 888 ACAAVETVLRRAQSHAQEAASGQIGLFGGGGEATAQETLRLPSVPDWPEFDRLNMEADAI 947 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 GF+ + HPLD Y P++R++G+ E+ A +++A VV ++++ TR G+++ W Sbjct: 948 GFHLTAHPLDSYGPLMRRLGVVKSTGLETAAAAGITRVKIAGCVVDRKERPTRTGNKMAW 1007 Query: 1018 VTFSEPAKEYEANFF 1032 V S+ + E FF Sbjct: 1008 VRLSDASGGCEVTFF 1022 >gi|148261382|ref|YP_001235509.1| DNA polymerase III subunit alpha [Acidiphilium cryptum JF-5] gi|146403063|gb|ABQ31590.1| DNA polymerase III, alpha subunit [Acidiphilium cryptum JF-5] Length = 1139 Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/1033 (46%), Positives = 663/1033 (64%), Gaps = 30/1033 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+YSL EGA+ + I + PA+AITDT+NLF ++EFSQ G+QPI Sbjct: 6 FVHLRVHSAYSLSEGAIKPDKIATLARDNAMPAVAITDTSNLFGSIEFSQACMGKGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +GCQ+ + +T P +P +VLL A G+ L +L SR +L + Sbjct: 66 VGCQIGL-----------ARTDLPRLPPDPLVLLAKDATGFANLSKLSSRSFLDTEPGLR 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 +I L L++ EGL +LTGG GP+ R A + L + F DRL V L+R Sbjct: 115 PQISLDTLRD-HHEGLFLLTGGRFGPVGRLLGDGQRPEAARLLAALAETFPDRLAVELER 173 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +R E ++ LA LPLVATN F +E +EAHD L+ +A V+S+ +R R Sbjct: 174 HDLPTERAVEPGLITLADEAGLPLVATNECFFATETMHEAHDALLCIAEGRVLSEAERRR 233 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 VTP H+ K +EM F+DLP+A +NT+ IARRC+ P+LP I + D E Sbjct: 234 VTPHHWFKPAAEMRRRFADLPDACDNTLAIARRCAIAAPTRKPLLP--ICPKVRDGATEA 291 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E LR A GL +RLA A+ YR+RL EL +I +M F GYFLIVADFIQWA Sbjct: 292 ET-LRAMAEEGLALRLAAMNADAATAAK-YRERLALELGIIEQMGFPGYFLIVADFIQWA 349 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K IPVGPGRGSGAGS+ A+AL ITDIDP+ F+LLFERFLNP+R+SMPDFDIDFCQ+RR Sbjct: 350 KSQGIPVGPGRGSGAGSLAAWALLITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQERR 409 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY QV+++ +++PN+PA P+ Sbjct: 410 DEVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGQVNKVAEIVPNNPAKPI 469 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 L +A+ + R RE R +D SV RL+EI+ ++EGLYRHASTHAAG+VIGDRPL +LVP+Y Sbjct: 470 PLAEAVDAEPRLREMRDSDESVKRLIEIAMQVEGLYRHASTHAAGVVIGDRPLDELVPLY 529 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 +D RSD+ +TQ++MK +E+AGL+KFDFLGL TLT++ ++L+FL G VD++ IP DD Sbjct: 530 KDPRSDMLITQYSMKHVEQAGLVKFDFLGLTTLTIISRALNFLDGLGTPVDIAKIPLDDA 589 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L+ G+FQ E+ G R L M+PD ED+IA V+L RPGP+ NI Y RK+ Sbjct: 590 KTYEMLSRAEAGGVFQFETQGFRDVLRQMRPDRFEDLIAAVALNRPGPMANIPAYCARKH 649 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G E S P I +L ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ EM+ Sbjct: 650 G-ESWESPDPSIHEILSETYGIMVYQEQVMQIAQKMAGYSLGAADLLRRAMGKKIRAEME 708 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q++ F+ GA G ++ AV +F+L+AKFADYGFNKSHAAAYA++SYQTAW++ ++P Sbjct: 709 AQRKIFVEGAVARGTAEAKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWLRANHPAA 768 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAA 841 F+AASM+L N EK+ QDA + I ++PP +N DF V G I Y+LAA Sbjct: 769 FIAASMSLSQANHEKLAALKQDAVRIGIPVLPPDINASAADFTVERQADGTLAIRYALAA 828 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IK VG + ++ A A++PF L DF +RVD + LN+ +E L AGA D +R ++ Sbjct: 829 IKRVGAGAMQDVVRARANRPFADLADFAARVDPRALNKAQIEQLARAGAFDRIDPNRARV 888 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 + + + AQ ++R + N+F + + L + R E +G+ Sbjct: 889 AAGAELLVRRAQAEAESRASGQINLFG--DAAAPEPLPLPDVPDWPAFERLSFEAEAVGY 946 Query: 962 YFSGHPLDVYKPILRKMGI--KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 + + HPLD Y +LR++G+ E+ A ++LA VV ++++ TR GSR+ WV Sbjct: 947 HLTAHPLDAYDTVLRRLGVVPSNLIEARAKAGIGRVKLAGAVVGRKERTTRTGSRMAWVM 1006 Query: 1020 FSEPAKEYEANFF 1032 S+ A +E F Sbjct: 1007 LSDQAGGFEVTLF 1019 >gi|58616909|ref|YP_196108.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Gardel] gi|58416521|emb|CAI27634.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Gardel] Length = 1122 Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/1032 (46%), Positives = 673/1032 (65%), Gaps = 51/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLL G + ++ +++ PA+A+TD+ NLF +LEFS A AG+QPI Sbjct: 8 FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNAGVQPI 67 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + + N + +VLL GY +I+LVS + +Q + R Sbjct: 68 IGCNIMVHYHGN------------NIGELVLLAKNQAGYNNIIDLVSNSFKGNQSGKLNR 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L+ L ++ +G+I+LTGG G + + + V K LL F+ + LYV LQR Sbjct: 116 IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLLAFE----NNLYVELQR 170 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E+ +++ AY LPLVATN+ LF+ +ED+ A+DVL ++ V+Q+DR Sbjct: 171 HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 230 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T +HY K+ EM S+F D+PEA+ NT+ IA+RCSF+ ++ PILP F C K E Sbjct: 231 FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHF---PCSS-GKNE 286 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL +A+AGLE RL +++ + Y +RL +EL+VI M ++GYFLIV+DFI W+ Sbjct: 287 SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R Sbjct: 346 KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV+ KYG+ VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P PV Sbjct: 406 DLVIEYVRKKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 463 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L +AI D ++ R D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y Sbjct: 464 TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 523 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ + + +RG +D+ IP DD Sbjct: 524 YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L++ ++G+FQLESSGMR+ + ++PD I DIIAL+SLYRPGP+DNI VY RK+ Sbjct: 584 KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G EK IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD Sbjct: 644 GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ FI+GA NGI++ A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E Sbjct: 704 NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F ASM L++ + +K++ FC A+ I I+PP +N V F + + I Y+L A+K VG Sbjct: 764 FFTASMNLDITDKDKLEMFCNQAKLHGISILPPDINYSKVFFVIEGSSIRYALGALKNVG 823 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 A ++ +D ++ + DF R+ +K +++R+LE+++ AG LD +R QL +S Sbjct: 824 QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFES-- 878 Query: 907 NIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + + +E N+ N N + H K +D T E+ + NE +G Sbjct: 879 -VILFLDIIEYNKYNSSFNQISLFNDKNHYKLVETDDWTKEE--------KLYNEFSSIG 929 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY + HP+ Y+ +L K+ I + N + A V+S + ++ + VT Sbjct: 930 FYLNNHPMQSYQDLLDKLNIGFINYDNKSAYNNKV---AGVISNIRVRSANRDKFALVTL 986 Query: 1021 SEPAKEYEANFF 1032 S+P +E F+ Sbjct: 987 SDPNNIHEIAFY 998 >gi|56416564|ref|YP_153638.1| DNA polymerase III alpha subunit [Anaplasma marginale str. St. Maries] gi|56387796|gb|AAV86383.1| DNA polymerase III alpha subunit [Anaplasma marginale str. St. Maries] Length = 1127 Score = 900 bits (2325), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/1026 (46%), Positives = 673/1026 (65%), Gaps = 35/1026 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLLEG + + +++ PA+A+TD+ NLF +LEFS A + G+QPI Sbjct: 6 FVHLRTHSDYSLLEGMIKIESLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC N+ + + G+ + +I++L + EG+ LI LVS + +Q ++ R Sbjct: 66 VGC--------NIMVHDAGED----LGNILMLTKSHEGFVNLISLVSNGFKENQSGKANR 113 Query: 131 ICL-SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + S L++ L+ + RA S+ + + + FG+ +YV LQRH Sbjct: 114 VDVNSLLRQGSGLLLLTGG--HDDILARALLGKSAGMGAINAIL--ETFGNDVYVELQRH 169 Query: 190 RGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G + +E + ++ AY +PLVATN+ F+ D++AHDVL ++ T + Q+ R R Sbjct: 170 -GLESQKEVEGLLIGFAYERNIPLVATNDVFFVRRGDFQAHDVLSCISDGTYIVQEGRRR 228 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +T +HY K EM +FSD+PEA+ NT IARRC+FI ++ P LP F C D + E Sbjct: 229 LTEEHYFKTSKEMFELFSDIPEAVRNTPMIARRCAFIAEIRKPSLPHF---PCSDGRTEA 285 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E EL A GLE RL I G + Y RL +EL ++ M +SGYFLIVADFI W+ Sbjct: 286 E-ELTECAKTGLEARLRAKNI-DGDKKEQYHNRLQYELGIVISMDYSGYFLIVADFICWS 343 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 KKN+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDIDFCQ++R Sbjct: 344 KKNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDIDFCQEKR 403 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D+VI YV+ KYG+ VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP+DP PV Sbjct: 404 DKVIEYVREKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIPHDPVSPV 461 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L +AI D + + +D +V +L EIS KLEGLYRHAS HAAGIVI D+PL VP+Y Sbjct: 462 TLSEAIEMDQNLKREKESDNTVAKLFEISLKLEGLYRHASVHAAGIVICDKPLEDFVPLY 521 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L + + RG ++LS +P DD Sbjct: 522 YDQSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGGSIELSELPLDDG 581 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L+T ++G+FQLES+GMR+A+ ++PD I+DIIAL+SLYRPGP++NI +Y RK+ Sbjct: 582 KTYEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIAIYIARKH 641 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G EK IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL AD+LRRAMGKKIKEEMD Sbjct: 642 GLEKPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGGADLLRRAMGKKIKEEMD 701 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 KQ++ F++GA KNGI + A IF+L+AKFA YGFNKSHAAAYA+IS+QTA++K +Y E Sbjct: 702 KQRQDFVNGAIKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLKANYTKE 761 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F ASM L++ + +K++ CQ AR +Q++PP VN+ V F + + I Y L A+K VG Sbjct: 762 FFTASMNLDIGDKDKLELLCQQARACGVQVLPPDVNSSGVLFTISGDAIKYGLGALKNVG 821 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T AR ++ A K + + DF + +K +RV+ESL+ +GALD +R QL +SL Sbjct: 822 QTAAREVV-PEAGKKYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRRQLFESLG 880 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 I + +K N+F +G + +E +S E + E+E LGFY H Sbjct: 881 TILDVIDDTRNSAESKQFNLFGITEG--HKLLEVEDWSEEE---KIEHEFSTLGFYLRYH 935 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 PL Y+ ILR +G+K E + + ++ +A V+S + ++ R V S+P Sbjct: 936 PLAKYEGILRGLGVKFVSECQDSSE-SGVKKSAGVISSVRIRSANKERFAVVRISDPYGV 994 Query: 1027 YEANFF 1032 + F+ Sbjct: 995 NDVAFY 1000 >gi|222474932|ref|YP_002563347.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str. Florida] gi|255002906|ref|ZP_05277870.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str. Puerto Rico] gi|222419068|gb|ACM49091.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str. Florida] Length = 1127 Score = 900 bits (2325), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/1026 (46%), Positives = 673/1026 (65%), Gaps = 35/1026 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLLEG + + +++ PA+A+TD+ NLF +LEFS A + G+QPI Sbjct: 6 FVHLRTHSDYSLLEGMIKIESLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC N+ + + G+ + +I++L + EG+ LI LVS + +Q ++ R Sbjct: 66 VGC--------NIMVHDAGED----LGNILMLTKSHEGFVNLISLVSNGFKENQSGKANR 113 Query: 131 ICL-SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + S L++ L+ + RA S+ + + + FG+ +YV LQRH Sbjct: 114 VDVNSLLRQGSGLLLLTGG--HDDILARALLGKSAGMGAINAIL--ETFGNDVYVELQRH 169 Query: 190 RGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G + +E + ++ AY +PLVATN+ F+ D++AHDVL ++ T + Q+ R R Sbjct: 170 -GLESQKEVEGLLIGFAYERNIPLVATNDVFFVRRGDFQAHDVLSCISDGTYIVQEGRRR 228 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +T +HY K EM +FSD+PEA+ NT IARRC+FI ++ P LP F C + E Sbjct: 229 LTEEHYFKTSKEMFELFSDIPEAVRNTPMIARRCAFIAEIRKPSLPHF---PCSGGRTEA 285 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E EL A GLE RL I G + Y RL +EL ++ M +SGYFLIVADFI W+ Sbjct: 286 E-ELTECAKTGLEARLRAKNI-DGDKKEQYHNRLQYELGIVISMDYSGYFLIVADFICWS 343 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 KKN+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDIDFCQ++R Sbjct: 344 KKNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDIDFCQEKR 403 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D+VI YV+ KYG+ VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP+DP PV Sbjct: 404 DKVIEYVREKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIPHDPVSPV 461 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L +AI D + + +D +V +L EIS KLEGLYRHAS HAAGIVI D+PL VP+Y Sbjct: 462 TLSEAIEMDQNLKREQESDNTVAKLFEISLKLEGLYRHASVHAAGIVICDKPLEDFVPLY 521 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L + + RGV ++LS +P DD Sbjct: 522 YDQSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGVSIELSELPLDDG 581 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L+T ++G+FQLES+GMR+A+ ++PD I+DIIAL+SLYRPGP++NI +Y RK+ Sbjct: 582 KTYEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIAIYIARKH 641 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G EK IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL AD+LRRAMGKKIKEEMD Sbjct: 642 GLEKPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGGADLLRRAMGKKIKEEMD 701 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 KQ++ F++GA KNGI + A IF+L+AKFA YGFNKSHAAAYA+IS+QTA++K +Y E Sbjct: 702 KQRQDFVNGAIKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLKANYTKE 761 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F ASM L++ + +K++ CQ AR +Q++PP VN+ V F + + I Y L A+K VG Sbjct: 762 FFTASMNLDIGDKDKLELLCQQARACGVQVLPPDVNSSGVLFTISGDAIKYGLGALKNVG 821 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T AR ++ A K + + DF + +K +RV+ESL+ +GALD +R QL +SL Sbjct: 822 QTAAREVV-PEAGKKYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRRQLFESLG 880 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 I + +K N+F +G + +E +S E + E+E LGFY H Sbjct: 881 TILDVIDDTRNSAESKQFNLFGITEG--HKLLEVEDWSEEE---KIEHEFSTLGFYLRYH 935 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 PL Y+ ILR +G+K E + + ++ +A V+S + ++ R V S+P Sbjct: 936 PLAKYEGILRGLGVKFVSECQDSSE-SGVKKSAGVISSVRIRSANKERFAVVRISDPYGV 994 Query: 1027 YEANFF 1032 + F+ Sbjct: 995 NDVAFY 1000 >gi|58578851|ref|YP_197063.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Welgevonden] gi|58417477|emb|CAI26681.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Welgevonden] Length = 1122 Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/1032 (45%), Positives = 672/1032 (65%), Gaps = 51/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLL G + ++ +++ PA+A+TD+ NLF +LEFS A G+QPI Sbjct: 8 FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNVGVQPI 67 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + + N + +VLL GY +I+LVS + +Q + R Sbjct: 68 IGCNIMVHYHGN------------NIGELVLLAKDQAGYNNIIDLVSNSFKGNQSGKLNR 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L+ L ++ +G+I+LTGG G + + + V K LL F+ + LYV LQR Sbjct: 116 IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLLAFE----NNLYVELQR 170 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E+ +++ AY LPLVATN+ LF+ +ED+ A+DVL ++ V+Q+DR Sbjct: 171 HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 230 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T +HY K+ EM S+F D+PEA+ NT+ IA+RCSF+ ++ PILP F C K E Sbjct: 231 FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHF---PCSS-GKNE 286 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL +A+AGLE RL +++ + Y +RL +EL+VI M ++GYFLIV+DFI W+ Sbjct: 287 SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R Sbjct: 346 KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV+ KYG+ VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P PV Sbjct: 406 DLVIEYVRKKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 463 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L +AI D ++ R D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y Sbjct: 464 TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 523 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ + + +RG +D+ IP DD Sbjct: 524 YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L++ ++G+FQLESSGMR+ + ++PD I DIIAL+SLYRPGP+DNI VY RK+ Sbjct: 584 KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G EK IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD Sbjct: 644 GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ FI+GA NGI++ A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E Sbjct: 704 NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F ASM L++ + +K++ FC A+ I I+PP +N V F + + I Y+L A+K VG Sbjct: 764 FFTASMNLDITDKDKLEMFCNQAKLHGINILPPDINYSKVFFVIEGSSIRYALGALKNVG 823 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 A ++ +D ++ + DF R+ +K +++R+LE+++ AG LD +R QL +S Sbjct: 824 QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFES-- 878 Query: 907 NIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + + +E N+ N N + H K +D T E+ + NE +G Sbjct: 879 -VILFLDIIEYNKYNSSFNQISLFNDKNHYKLVETDDWTKEE--------KLYNEFSSIG 929 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY + HP+ Y+ +L K+ I + N + A V+S + ++ + VT Sbjct: 930 FYLNNHPMQSYQDLLDKLNIGFINYDNKSAYNNKV---AGVISNIRVRSANRDKFALVTL 986 Query: 1021 SEPAKEYEANFF 1032 S+P +E F+ Sbjct: 987 SDPNNIHEIAFY 998 >gi|57238919|ref|YP_180055.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Welgevonden] gi|57160998|emb|CAH57904.1| DNA polymerase III, alpha subunit [Ehrlichia ruminantium str. Welgevonden] Length = 1119 Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/1032 (45%), Positives = 672/1032 (65%), Gaps = 51/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLL G + ++ +++ PA+A+TD+ NLF +LEFS A G+QPI Sbjct: 5 FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNVGVQPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + + N + +VLL GY +I+LVS + +Q + R Sbjct: 65 IGCNIMVHYHGN------------NIGELVLLAKDQAGYNNIIDLVSNSFKGNQSGKLNR 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L+ L ++ +G+I+LTGG G + + + V K LL F+ + LYV LQR Sbjct: 113 IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLLAFE----NNLYVELQR 167 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E+ +++ AY LPLVATN+ LF+ +ED+ A+DVL ++ V+Q+DR Sbjct: 168 HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 227 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T +HY K+ EM S+F D+PEA+ NT+ IA+RCSF+ ++ PILP F C K E Sbjct: 228 FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHF---PCSS-GKNE 283 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL +A+AGLE RL +++ + Y +RL +EL+VI M ++GYFLIV+DFI W+ Sbjct: 284 SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 342 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R Sbjct: 343 KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 402 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV+ KYG+ VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P PV Sbjct: 403 DLVIEYVRKKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 460 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L +AI D ++ R D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y Sbjct: 461 TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 520 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ + + +RG +D+ IP DD Sbjct: 521 YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 580 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L++ ++G+FQLESSGMR+ + ++PD I DIIAL+SLYRPGP+DNI VY RK+ Sbjct: 581 KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 640 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G EK IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD Sbjct: 641 GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 700 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ FI+GA NGI++ A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E Sbjct: 701 NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 760 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F ASM L++ + +K++ FC A+ I I+PP +N V F + + I Y+L A+K VG Sbjct: 761 FFTASMNLDITDKDKLEMFCNQAKLHGINILPPDINYSKVFFVIEGSSIRYALGALKNVG 820 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 A ++ +D ++ + DF R+ +K +++R+LE+++ AG LD +R QL +S Sbjct: 821 QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFES-- 875 Query: 907 NIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + + +E N+ N N + H K +D T E+ + NE +G Sbjct: 876 -VILFLDIIEYNKYNSSFNQISLFNDKNHYKLVETDDWTKEE--------KLYNEFSSIG 926 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY + HP+ Y+ +L K+ I + N + A V+S + ++ + VT Sbjct: 927 FYLNNHPMQSYQDLLDKLNIGFINYDNKSAYNNKV---AGVISNIRVRSANRDKFALVTL 983 Query: 1021 SEPAKEYEANFF 1032 S+P +E F+ Sbjct: 984 SDPNNIHEIAFY 995 >gi|88658193|ref|YP_507712.1| DNA polymerase III, alpha subunit [Ehrlichia chaffeensis str. Arkansas] gi|88599650|gb|ABD45119.1| DNA polymerase III, alpha subunit [Ehrlichia chaffeensis str. Arkansas] Length = 1120 Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/1036 (45%), Positives = 678/1036 (65%), Gaps = 52/1036 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+ HS YSLL G + ++++++ PA+A+TD+ NLF +LEFS A + G+ Sbjct: 2 SQIFVHLRSHSDYSLLHGMIKIDSLVNLCVQYNMPALALTDSGNLFGSLEFSDYASSLGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 QPIIGC N+ M+ G + + +VLLV GY ++ LVS + Q + Sbjct: 62 QPIIGC--------NIMMSYNGDS----IGELVLLVKDQIGYNNIVNLVSNSFKDSQSNK 109 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVN 185 R+ L L ++ +G+I+LTGG G + + N + +K LL F LYV Sbjct: 110 VNRVDLEKLIDL-KDGIIVLTGGHDGFLSQLLLGNVIDYGIIDKLLLAFNG----NLYVE 164 Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQRH ++ E +V AY +LPLVATN+ LF + D+ AHDVL ++ ++Q+ Sbjct: 165 LQRHGMEEEKIIEKTLVNFAYEKDLPLVATNDVLFAKKNDFLAHDVLSCISDGNYIAQEG 224 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T +HY K+ EM +F D+PEA+ NTV IA+RCSF+ + P+LP F C Sbjct: 225 RKMFTEEHYFKSSDEMYRLFKDIPEAVSNTVLIAQRCSFMPETRKPMLPHF---PCSS-G 280 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 K E EL ++A+ GL+ RL +++ Y +RL +EL++I M ++GYFLIV+DFI Sbjct: 281 KNESQELISQAINGLDNRLKSKSLSTE-QVSKYYERLHYELDIIISMDYAGYFLIVSDFI 339 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 W+K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ Sbjct: 340 CWSKRNDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQ 399 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 ++RD VI YV+ KYG+ VA IITFG LQAKA LRDVGR +QMPY QVDR+CK+IP++P Sbjct: 400 EKRDYVIEYVRKKYGY--VAHIITFGKLQAKAVLRDVGRVMQMPYFQVDRICKMIPHNPV 457 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 PV+L +AI D ++ + D +V +LLEIS KLEGLYRH S HAAGIVI DR L +L+ Sbjct: 458 KPVTLSEAIEMDKNLQKEQDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRELEELL 517 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+Y D S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ + + + G VD+S IP Sbjct: 518 PLYYDSTSSLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVNRGGHSVDISRIPL 577 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D +TY +L+ ++G+FQLESSGMR+ + ++PD I DIIAL+SLYRPGP+DNI +Y Sbjct: 578 NDRKTYEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNISIYIA 637 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G EK IHP+++ +L+ET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKE Sbjct: 638 RKHGFEKPDYIHPILEDVLRETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKE 697 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD Q+ FI+GA NGI + A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y Sbjct: 698 EMDNQRRTFINGAVSNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANY 757 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAI 842 +EF ASM L++ + +K++ C A+ I+I+PP +N+ V F + G + I Y+L A+ Sbjct: 758 TLEFFTASMNLDIMDKDKLEMLCHQAKLHGIEILPPDINSSKVLFTIEGASSIRYALGAL 817 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 K VG +A+ I++ D + + DF RV +K +++R+LES++ AG LD +R QL Sbjct: 818 KNVGQHSAKEIVD---DVAYKDIWDFIDRVSTKCVHKRILESIIKAGVLDSIHSNRKQLF 874 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKFSVENSSVRFENEQ 956 +S + + +E N+ N + N F+ H K + +D T E+ + NE Sbjct: 875 ES---VFLFLDIIEYNKYNANFNQFSLFNDKNHYKLSETDDWTKEE--------KLNNEF 923 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 +GFY + HP++ YK +L K+ I G+ NN+ + ++S + ++ + Sbjct: 924 SSIGFYLNHHPMENYKYLLDKLNI-GFIHYDDKSSYNNVIVG--IISNVKVRSTNKDKFA 980 Query: 1017 WVTFSEPAKEYEANFF 1032 VT S+P +E F+ Sbjct: 981 VVTLSDPFNIHEIVFY 996 >gi|269959021|ref|YP_003328810.1| DNA polymerase III alpha subunit [Anaplasma centrale str. Israel] gi|269848852|gb|ACZ49496.1| DNA polymerase III alpha subunit [Anaplasma centrale str. Israel] Length = 1127 Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/1025 (46%), Positives = 676/1025 (65%), Gaps = 33/1025 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLLEG + +++++ PA+A+TD+ NLF +LEFS A + G+QPI Sbjct: 6 FVHLRTHSDYSLLEGMIKIDSLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC N+ + + G+ + +I++L + EG+ LI LVS + +Q ++ R Sbjct: 66 VGC--------NIMVHDAGED----LGNILMLTKSREGFANLISLVSNGFRENQSGKANR 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + +S L GL++LTGG + RA S+ + + + FG +YV LQRH Sbjct: 114 VNVSDLLR-QGSGLLLLTGGHDDILARALLRKSAGLGAINAVL--EAFGSDVYVELQRH- 169 Query: 191 GYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G + +E + ++ AY +PLVATN+ F +D++AHDVL ++ T + Q+ R R+ Sbjct: 170 GLESQKEVEGLLISFAYERNVPLVATNDVFFARRDDFQAHDVLSCISDGTYIVQEGRRRL 229 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +HY K EM +F+D+PEA+ NT IARRCSFI ++ P LP F C D + E E Sbjct: 230 TEEHYFKTSKEMFELFADIPEAVRNTPMIARRCSFIAEIRKPSLPHF---PCSDGRTEAE 286 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL A GLE RL I + A+ Y RL +EL V+ M +SGYFLIVADFI W+K Sbjct: 287 -ELTECAKTGLEARLRTKNIDEDRRAK-YHDRLQYELGVVISMDYSGYFLIVADFICWSK 344 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 KN+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDIDFCQ++RD Sbjct: 345 KNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDIDFCQEKRD 404 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI YV+ KYG+ VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP DP PV+ Sbjct: 405 RVIEYVREKYGY--VAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIPLDPVSPVT 462 Query: 489 L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L +AI D + + +D +V +LLEIS KLEGLYRHAS HAAGIVI D+PL VP+Y Sbjct: 463 LSEAIEMDQNLKREQESDHTVAKLLEISLKLEGLYRHASVHAAGIVICDKPLEDFVPLYY 522 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L + + RG+ ++LS +P DD + Sbjct: 523 DQSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGISIELSELPLDDSK 582 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L+T ++G+FQLES+GMR+A+ ++PD I+DIIAL+SLYRPGP++NI +Y RK+G Sbjct: 583 TYEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIAIYIARKHG 642 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 E IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL AD+LRRAMGKKIKEEMDK Sbjct: 643 LESPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGSADLLRRAMGKKIKEEMDK 702 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q++ F++GA KNGI + A IF+L+AKFA YGFNKSHAAAYA+IS+QTA++K +Y EF Sbjct: 703 QRQNFVNGAVKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLKANYTKEF 762 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 ASM L++ + +K++ CQ A+ ++++PP VN+ V F + + I Y L A+K VG Sbjct: 763 FTASMNLDIGDKDKLELLCQQAKACGVRVLPPDVNSSGVLFTISGDAIKYGLGALKNVGQ 822 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T AR ++ A K + + DF + +K +RV+ESL+ +GALD +R QL +SL Sbjct: 823 TAAREVV-PEAGKQYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRRQLFESLGT 881 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 I + +K N+F +G + +E +S E + +E LGFY HP Sbjct: 882 ILDVIDDTRNSAESKQFNLFGITEG--HKLLEVEDWSEEE---KIAHEFSTLGFYLRYHP 936 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L Y+ +LR +GI+ E ++ + I+ +A +S + ++ R V S+P Sbjct: 937 LAKYEGVLRGLGIRFVSECQNSVE-SGIKKSAGTISSVRIRSANKERFAVVRISDPYGVN 995 Query: 1028 EANFF 1032 + F+ Sbjct: 996 DVAFY 1000 >gi|103486667|ref|YP_616228.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256] gi|98976744|gb|ABF52895.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256] Length = 1162 Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/1039 (46%), Positives = 652/1039 (62%), Gaps = 33/1039 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQP 69 FV L+V SSY++LEGA+ I K A D+ PAIA+ D N L+ + F + AAG+QP Sbjct: 6 FVPLRVFSSYTMLEGAIEPKAIA-KAARDRGFPAIAVADRNGLYGVMAFGEACQAAGVQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G L + + ++ N P + + L A GY L LVS +L +Q Sbjct: 65 IVGALLSV-ARPGQRLANGA----PLIDWLALYAQDARGYHNLCALVSAAHLGRPVEQEP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + LS + T+GLI LTGG G + R AE + + LFG+RLY+ L R Sbjct: 120 HVALSDMTGR-TDGLICLTGGGEGALARLLAGEQQSAAEDYMEQLEALFGERLYIELSR- 177 Query: 190 RG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RG + E+ ++ +AY LPLVATN + F+ + + AHD ++ +A S V +DR Sbjct: 178 RGDATEAAAENALIDMAYARALPLVATNPANFVEPQFHAAHDAMLCIAQSAYVESEDRRV 237 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ +LK M FSDLPEA+ NT+ IA+RC+F+ PILP ++ E Sbjct: 238 SNPEAWLKPAEAMEDAFSDLPEAIRNTLVIAQRCAFMAPKRKPILPSLAGD-----REGE 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 +L+ A AGL+ RLA Q Y +RLD+E++VI +M F GYFLIVADFI+WA Sbjct: 293 AAQLKADAHAGLDARLAHYPDLTDEERQAYVERLDYEIDVITQMGFPGYFLIVADFIKWA 352 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +IPVGPGRGSGAGSV A+ALTITD+DPL+ LLFERFLNP+R+SMPDFDIDFC+ RR Sbjct: 353 KAQDIPVGPGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRR 412 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P P Sbjct: 413 GEVIRYVQEKYGRDTVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPW 472 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ A+ S D V RL +++++LEGL RH+STHAAG+VIGDRPL QLVP+Y Sbjct: 473 TLERALNGVSELMTEYKQDDGVRRLFDMARQLEGLPRHSSTHAAGVVIGDRPLDQLVPLY 532 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++L+++ LA RG+ VDL + +DD Sbjct: 533 RDPRSDMPVTQFDMKYVETAGLVKFDFLGLKTLSVLKEARRLLALRGIDVDLDTLRWDDA 592 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y LL T+G+FQLES GMR+ L ++P DIIALV+LYRPGP+DNI ++ RKN Sbjct: 593 QVYELLQRGDTVGVFQLESEGMRRTLSAVKPTSFGDIIALVALYRPGPMDNIPLFGARKN 652 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+E I HPL++ +L ET G+ +YQEQVMQ AQ+L+GYSL AD+LRRAMGKKI+ EMD Sbjct: 653 GREPIAYPHPLLEGILAETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIQAEMD 712 Query: 727 KQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 Q+E F+ G + N I A +F+L+ KFA YGFNKSHAAAYA++SYQTAW+K H+P Sbjct: 713 AQRETFVKGCGEHNQIDAKTANELFDLIDKFAGYGFNKSHAAAYALLSYQTAWLKAHHPH 772 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAA 841 EF AASM+ + +K+ F D R+ I I PPS+N DF VG + Y+L A Sbjct: 773 EFFAASMSFDSHQTDKLSVFIDDMRRLGIDIAPPSINESEADFSVGRTDDGLAVRYALGA 832 Query: 842 IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +KGVG ++ E A F SL+DF SR+D K LNRR +E+L AGA DC R + Sbjct: 833 LKGVGEKAMEALVAERQARGDFASLDDFASRIDPKLLNRRQIEALAGAGAFDCVEPDRPR 892 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRV 958 + + A R+ +F G + TL+ + E ++ R E+ Sbjct: 893 AFAGAEALLACANSSAHERSTGQGGLFG---GDIAIAPTLQLPAAEPWTLAERMTREKEA 949 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYE---ESVATIRGNNIR--LAAMVVSKQQKKTRKGS 1013 GFYFS HP++ Y+ IL G + Y E+V G I +AAMV S + + +++G+ Sbjct: 950 FGFYFSAHPVEQYEAILSARGARSYGDICENVEMTPGTRIPMVMAAMVESARARVSQRGN 1009 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 R +T S+ + +++++ F Sbjct: 1010 RFLNLTLSDRSGQFQSSCF 1028 >gi|58696665|ref|ZP_00372218.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58537166|gb|EAL60270.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Drosophila simulans] Length = 1120 Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/1025 (46%), Positives = 660/1025 (64%), Gaps = 45/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSLLE ++ + ++ ++ PA+AITD+ NLF +LEF++ A + GIQ I Sbjct: 13 FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 72 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 IGC + + + P I+LL +GY L+ LVS + + + Sbjct: 73 IGCNI---------IVKHSEQNLP----ILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L + T GLI LTGG + + + EK L F LYV LQRH Sbjct: 120 YVDFDELLNLST-GLIALTGGC---LAQLLLGQDKETVEKLL----SAFNGHLYVELQRH 171 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E ++ AY +PLVATN+ F + DYEA+D+L ++ + + +R ++ Sbjct: 172 GLSKELELEETLIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 231 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +HY K+ +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K E Sbjct: 232 TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 287 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ELR +AVAGLE R+A + Y RL++EL+VI M ++GYFLIV+DFI+W+K Sbjct: 288 EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 344 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD Sbjct: 345 ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 404 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI YVQ KYG+ VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+ Sbjct: 405 LVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 462 Query: 489 L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L QAI D ++ R +D + +LL+IS KLEG+YRH STHAAGIVI D+ L VP+Y Sbjct: 463 LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 522 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + + K+D+S +P DD + Sbjct: 523 DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDRQKIDISSVPLDDQK 582 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L++ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y RK+G Sbjct: 583 TYEMLSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 642 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK Sbjct: 643 LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 702 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+E FI GA+KNG+ A IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF Sbjct: 703 QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 762 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A M L +D+ +K+ F A+ + ++ P +N +F + D RI Y +AA++ VG Sbjct: 763 FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGF 822 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + A I+ + D E F +N+R LESL+ +GA D +R QL +S+D Sbjct: 823 SIAEGIVNVRSSACKDIWE-FIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 880 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +A +++R + +F +E F E + E+E LGFY + HP Sbjct: 881 LIYFANKNKQDRESSQAALFGSLDVLKPKLENVEDFDEEE---KLEHELFSLGFYLTNHP 937 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L+ ++ +L K+ I G+ I N A V+ + +T + R +T S+P Sbjct: 938 LEKFRTLLEKLNI-GF------IGENRTAKTAGVILNARMRTSERGRFVILTLSDPHNVS 990 Query: 1028 EANFF 1032 E F+ Sbjct: 991 EIAFY 995 >gi|42520619|ref|NP_966534.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410358|gb|AAS14468.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 1109 Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/1026 (46%), Positives = 664/1026 (64%), Gaps = 47/1026 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSLLE ++ + ++ ++ PA+AITD+ NLF +LEF++ A + GIQ I Sbjct: 2 FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 IGC + + + P I+LL +GY L+ LVS + + + Sbjct: 62 IGCNI---------IVKHSEQNLP----ILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L + T GLI LTGGS + + + EK L F LYV LQRH Sbjct: 109 YVDFDELLNLST-GLIALTGGS---LAQLLLGQDKETVEKLL----SAFNGHLYVELQRH 160 Query: 190 RGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G ++ E + ++ AY +PLVATN+ F + DYEA+D+L ++ + + +R + Sbjct: 161 -GLNKELELEEALIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKK 219 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +T +HY K+ +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K E Sbjct: 220 LTTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTE 275 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ELR +AVAGLE R+A + Y RL++EL+VI M ++GYFLIV+DFI+W+ Sbjct: 276 NEELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++R Sbjct: 333 KANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YVQ KYG+ VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV Sbjct: 393 DLVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPV 450 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L QAI D ++ R +D + +LL+IS +LEG+YRH STHAAGIVI D+ L VP+Y Sbjct: 451 TLSQAIEFDQNLQKERDSDEVIAKLLDISLRLEGIYRHVSTHAAGIVICDQKLENFVPVY 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + + G K+D+S +P +D Sbjct: 511 YDPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLNDQ 570 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L++ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y RK+ Sbjct: 571 KTYEILSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKH 630 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMD Sbjct: 631 GLEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMD 690 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 KQ+E FI GA+KNG+ A IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+E Sbjct: 691 KQRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLE 750 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A M L +D+ +K+ F A+ + ++ P +N +F + D RI Y +AA++ VG Sbjct: 751 FFTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINNSQAEFSIEDERIRYGIAALRNVG 810 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + I+ + D E F +N+R LESL+ +GA D +R QL +S+D Sbjct: 811 FSIVEGIVNVRSSACKDIWE-FIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMD 868 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + +A ++++ + +F +E F E + E+E LGFY + H Sbjct: 869 TLIYFANKNKQDKESSQAALFGSLDVLKPKLENVEDFDEEE---KLEHELFSLGFYLTNH 925 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 PL+ ++ +L K+ I G+ I N A V+ + +T + R +T S+P Sbjct: 926 PLEKFRTLLEKLNI-GF------IGENRTAKTAGVILNARMRTSERGRFVILTLSDPHNV 978 Query: 1027 YEANFF 1032 E F+ Sbjct: 979 SEIAFY 984 >gi|225630393|ref|YP_002727184.1| DNA polymerase III, alpha subunit [Wolbachia sp. wRi] gi|225592374|gb|ACN95393.1| DNA polymerase III, alpha subunit [Wolbachia sp. wRi] Length = 1158 Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/1025 (46%), Positives = 660/1025 (64%), Gaps = 45/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSLLE ++ + ++ ++ PA+AITD+ NLF +LEF++ A + GIQ I Sbjct: 51 FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 110 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 IGC + + + P I+LL +GY L+ LVS + + + Sbjct: 111 IGCNI---------IVKHSEQNLP----ILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 157 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L + T GLI LTGG + + + EK L F LYV LQRH Sbjct: 158 YVDFDELLNLST-GLIALTGGC---LAQLLLGQDKETVEKLL----SAFNGHLYVELQRH 209 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E ++ AY +PLVATN+ F + DYEA+D+L ++ + + +R ++ Sbjct: 210 GLSKELELEETLIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 269 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +HY K+ +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K E Sbjct: 270 TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 325 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ELR +AVAGLE R+A + Y RL++EL+VI M ++GYFLIV+DFI+W+K Sbjct: 326 EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 382 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD Sbjct: 383 ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 442 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI YVQ KYG+ VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+ Sbjct: 443 LVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 500 Query: 489 L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L QAI D ++ R +D + +LL+IS KLEG+YRH STHAAGIVI D+ L VP+Y Sbjct: 501 LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 560 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + + K+D+S +P DD + Sbjct: 561 DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDRQKIDISSVPLDDQK 620 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L++ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y RK+G Sbjct: 621 TYEMLSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 680 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK Sbjct: 681 LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 740 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+E FI GA+KNG+ A IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF Sbjct: 741 QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 800 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A M L +D+ +K+ F A+ + ++ P +N +F + D RI Y +AA++ VG Sbjct: 801 FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGF 860 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + A I+ + D E F +N+R LESL+ +GA D +R QL +S+D Sbjct: 861 SIAEGIVNVRSSACKDIWE-FIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 918 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +A +++R + +F +E F E + E+E LGFY + HP Sbjct: 919 LIYFANKNKQDRESSQAALFGSLDVLKPKLENVEDFDEEE---KLEHELFSLGFYLTNHP 975 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L+ ++ +L K+ I G+ I N A V+ + +T + R +T S+P Sbjct: 976 LEKFRTLLEKLNI-GF------IGENRTAKTAGVILNARMRTSERGRFVILTLSDPHNVS 1028 Query: 1028 EANFF 1032 E F+ Sbjct: 1029 EIAFY 1033 >gi|58584756|ref|YP_198329.1| DNA polymerase III alpha subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419072|gb|AAW71087.1| DNA polymerase III alpha subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 1112 Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/1027 (46%), Positives = 667/1027 (64%), Gaps = 46/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSLLE ++ + ++ ++ PA+AITD+ NLF +LEFS+ A + GIQ I Sbjct: 2 FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFSEYAASRGIQLI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 GC + + + +P I+LL +GY L+ LVS + + + Sbjct: 62 TGCNIIVRYSEQ------------NLP-ILLLTKNEQGYTNLVTLVSESFRKRKNNSDIP 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L + T GLI LTGG G + + F + EK LL F LYV LQRH Sbjct: 109 YVDFDELLNLST-GLITLTGGCDGILAQLLFRQDKGIVEKLLLAF----NGHLYVELQRH 163 Query: 190 RGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G ++ E + ++ AY H +PLVATN+ F + DYEA+D+L ++ + + +R + Sbjct: 164 -GLNKELELEETLIDFAYQHNIPLVATNDVFFPNRSDYEAYDILTCISEGSYTLENNRKK 222 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +T +HY K+ +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K E Sbjct: 223 LTTEHYFKSVAEMEKLFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTE 278 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL+ +A AGLE+R+A + Y RL++EL+VI M ++GYFLIV+DFI+W+ Sbjct: 279 NEELKEQATAGLELRIANKI---DIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWS 335 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N IPVGPGRGSGAGS+ A+AL ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++R Sbjct: 336 KANGIPVGPGRGSGAGSIVAWALQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKR 395 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YVQ KYG+ VAQIITFG LQA+A LRDVGR LQM Y+QVD++ K++P +P +PV Sbjct: 396 DLVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMSYTQVDKISKMVPFNPVNPV 453 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L QAI D ++ R +D + +LL+IS KLEG+YRH STHAAGIVI D+ L VP+Y Sbjct: 454 TLSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVY 513 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + Q G K+D++ + +D Sbjct: 514 YDPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINQNGKKIDIASVSLNDR 573 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L+ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y RK+ Sbjct: 574 KTYEMLSNGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYIARKH 633 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK EMD Sbjct: 634 GLEKPDYIHPLLERVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAEMD 693 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 KQ++ F+ GA+KNG+ A IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+E Sbjct: 694 KQRKLFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLE 753 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A M L +D+ +K+ F A+ + ++ P ++ +F + I Y +AA++ VG Sbjct: 754 FFTALMNLNIDDRDKLNLFYHAAKFSGVSVLLPDISKSKAEFSIEGKHIRYGIAALRNVG 813 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + A I+ + + + +F N+R LESL+ +GA D +R QL +S+D Sbjct: 814 FSIAEGIVNTRSS-TYKDIWEFIQN-SGHITNKRALESLIKSGACDSVHKNRKQLYESID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +A ++R + +F G F+ K LEK N + E+E LGFY + Sbjct: 872 TLVYFANKNRQDRESNQAVLF----GNFNVLKPKLEKVKDFNEEEKLEHELFSLGFYLTS 927 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HPL+ ++ +L K+ I G+ I N I A V+ + +T + R +T S+P Sbjct: 928 HPLEKFRTLLEKLNI-GF------IGENKIAKTAGVILNVRMRTSERGRFVILTLSDPHN 980 Query: 1026 EYEANFF 1032 E F+ Sbjct: 981 VSEIAFY 987 >gi|114800101|ref|YP_760471.1| DNA polymerase III subunit alpha [Hyphomonas neptunium ATCC 15444] gi|114740275|gb|ABI78400.1| DNA polymerase III, alpha subunit [Hyphomonas neptunium ATCC 15444] Length = 1140 Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/1032 (45%), Positives = 648/1032 (62%), Gaps = 31/1032 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL + SS+SLLE ++ ++ PA+A+TD N LF ALE S K G+Q Sbjct: 4 PVFIHLAIRSSFSLLESMITPADLAKWCKQYSMPAMAVTDRNCLFGALELSIKLSDYGVQ 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI+ C D+ +P + + GY+RL+ L SR YL D G Sbjct: 64 PIMACCFDV----------TDGSPKAELFRLTAYAQDDVGYKRLMFLSSRAYLEADDGVP 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ +L E TEGLI+LTGG+ G + R A L T + R YV + Sbjct: 114 --RLHKKYLLE-NTEGLILLTGGAEGEVARHILKGRLADARTELSTLATAYPGRCYVEIT 170 Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 RH + + E+ +V+LAY LPLVAT+++ FL ED AHD +M +A+ + Q DR Sbjct: 171 RHGTQEEIKSETGLVELAYELGLPLVATHDARFLKPEDVTAHDAMMCIANGQYLGQDDRK 230 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 RV PD YLK+ EM +F+DLPEA+ NT EIA RCS + PILP F ++ + Sbjct: 231 RVEPDQYLKSPEEMEVLFADLPEAIANTSEIAIRCSVRAETRKPILPNFSKE-----GRS 285 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E EL +A GLE RLA+ A +A Q Y RL++EL +I RM F GYFLIV+DFI Sbjct: 286 EGEELALQARQGLEERLAE---ADRLYAERQVYLDRLEYELGIIDRMGFPGYFLIVSDFI 342 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK N IPVGPGRGSGAGS+ A+ L ITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQ Sbjct: 343 KWAKANGIPVGPGRGSGAGSLVAWVLLITDLDPLRFDLLFERFLNPERVSMPDFDVDFCQ 402 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVIRYV+ KYG + VA IITFG+LQAKA +RDVGR +QMPY QVDRL KLIP +PA Sbjct: 403 ERRGEVIRYVREKYGADSVAMIITFGTLQAKAVVRDVGRVMQMPYGQVDRLAKLIPFNPA 462 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 P +L +AIA + +F + AD V L++ ++ LEG+YR+A THAAG+VI DRPL +LV Sbjct: 463 KPPTLDEAIAAEPKFDDEIAADARVGELIDTARALEGMYRNAGTHAAGVVIADRPLVELV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+Y D R+DLP TQFNMK+ E AGL+KFDFLGLKTLT++ ++L+F+ + G V + Sbjct: 523 PLYNDPRADLPATQFNMKYAEMAGLVKFDFLGLKTLTVIDRALNFIRRDGGDVGPAWRSM 582 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY L+ + TLG+FQLE +GMR L ++P+ IED+IA++SLYRPGP++NI VY Sbjct: 583 DDPATYELMASGETLGVFQLEGAGMRDTLRRVRPNNIEDLIAIISLYRPGPMENIPVYVQ 642 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 K + HP + P+L+ T GV +YQEQVM++AQ ++GYSL EAD+LRRAMGKK E Sbjct: 643 GKEDPASVRYQHPDLKPVLEATYGVPVYQEQVMRMAQEIAGYSLGEADLLRRAMGKKKLE 702 Query: 724 EMDKQKERFISGASKN-GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EM Q+ RF+ GA+ N G+ ++A IF+ + KFA YGFNKSHAAAYA+I Y TA++K H Sbjct: 703 EMIAQRRRFVEGAAANKGMKDSLANEIFDTMEKFAGYGFNKSHAAAYALIGYHTAFLKCH 762 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP EFLAASM+L++ N +K+ F Q+A++ + ++ P +N+ DF V ++ I Y+L AI Sbjct: 763 YPKEFLAASMSLDIGNTDKLAAFFQEAKRLRLHVLAPDINSSQPDFDVNEDGIVYALGAI 822 Query: 843 KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 KGVG +H+ S PF L DF RVD K +N++ LESL +GALDC +R ++ Sbjct: 823 KGVGVEAMKHVSAVRSEGGPFKDLYDFAERVDPKHVNKKALESLAKSGALDCLEGNRARV 882 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 + + +Y ++R+ +F + + + + + + E + +GF Sbjct: 883 FAVVPMLAQYCASHAEDRSGGQGGLFGESEPALRPEFPPSR--PWTAQQKLDEEFKSIGF 940 Query: 962 YFSGHPL-DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 YFSGHPL DV I R E G + + +V ++ K +++G + ++T Sbjct: 941 YFSGHPLDDVLTSIDRDRVTLAMEVHERAGDGKPLEMIGIVRTRNDKPSKRGGKFAFLTI 1000 Query: 1021 SEPAKEYEANFF 1032 S+P E E F Sbjct: 1001 SDPTGELEMMVF 1012 >gi|294011725|ref|YP_003545185.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S] gi|292675055|dbj|BAI96573.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S] Length = 1178 Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/1041 (46%), Positives = 650/1041 (62%), Gaps = 31/1041 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FV L+V SS+++LEGA+ I + A PA AITD N L+ ++ FS G+QP Sbjct: 5 GFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDACKGEGVQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + D + N P I L A GY L LVS +L ++ Sbjct: 65 IIGAMVGVSRPD--RPANAA----PVHDWIALYAQDAAGYDNLCALVSMAHLDRPVEEVP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QR 188 I L L E T+GLI LT G G + R F + A + LF RLY+ + +R Sbjct: 119 HISLDML-EGRTDGLIALTAGGEGALARLFAEDQPAAALAYAKRLEALFPGRLYIEICRR 177 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E +++ LAY +LPLVATN + F +EAHDV++ +A S V DR Sbjct: 178 FDPIEGKAEPELLDLAYARDLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETPDRRTS 237 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +PD ++K +EM +F DLPEAL NT+ +A+RC+ PILP DI+ E + Sbjct: 238 SPDAWMKPAAEMKRLFDDLPEALANTLVVAQRCAVAAPKRKPILPSL----AGDIEGEAK 293 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR +A AGLE RLA+ IA + Y +RL FE ++I +M F GYFLIVADFI+WAK Sbjct: 294 M-LREQATAGLEARLAKAGIADEEARKPYFERLKFETDIIIQMGFPGYFLIVADFIKWAK 352 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +IPVGPGRGSGAGSV A+ALTITD+DPL+ LLFERFLNP+R+SMPDFDIDFC+ RR Sbjct: 353 DKDIPVGPGRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRG 412 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P P + Sbjct: 413 EVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWT 472 Query: 489 LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L+ ++ + FR D V RL++ + KLEG RH+STHAAG+VIGDRPLSQLVP+YR Sbjct: 473 LERSLNGVAEFRAEYDNDAQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYR 532 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ LA RGV++DL+ + +DD Sbjct: 533 DPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVEIDLNSLGWDDPA 592 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 Y LL T+G+FQLES GMR+ L ++P DIIALVSLYRPGP+DNI ++ RKNG Sbjct: 593 VYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNG 652 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +E+I H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD Sbjct: 653 QEEIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDA 712 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+ RF+ G +K+ I+ A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HYP EF Sbjct: 713 QRARFVEGCAKSDIAAAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEF 772 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDN-----RIY 836 AASM ++ +K+ F D R+ + + P +N DF V GD+ + Sbjct: 773 YAASMAFDIHLTDKLTVFVDDMRRMGLTCLAPDINRSLADFSVEAVDCEGDDPRLGFAVR 832 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y+L +KGVG ++ E A F SL+DF R++ + LNRR LESL AGA D Sbjct: 833 YALGGLKGVGEKAMEQLVAEREAGGSFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGVH 892 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R + + + I A + R + +F + +D + + +++ R E Sbjct: 893 PDRAGVHAAAETILSVASSAAEARESGQGGLFGDVETPHAD-VRVPPHQTWSTADRMAQE 951 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGY----EESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + GFYFS HP+D Y+ + G K Y E VA N +AAMV + ++TR+ Sbjct: 952 KEAFGFYFSAHPVDRYRHLAEARGAKSYGAICAEPVAEGGRANGVMAAMVEDVRWRETRR 1011 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G+R TFS+ + +++A+ F Sbjct: 1012 GARYAAATFSDSSGQFQASCF 1032 >gi|213019585|ref|ZP_03335391.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995007|gb|EEB55649.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 1118 Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/1028 (46%), Positives = 665/1028 (64%), Gaps = 54/1028 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSLLE ++ + ++ ++ PA+A+TD+ NLF +LEF++ A GIQ I Sbjct: 14 FIHLRVHSVYSLLESSVKIEELIGLCLQNKMPAVAVTDSGNLFGSLEFAEYAANKGIQLI 73 Query: 71 IGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC + + ++ NL SI+LL +GY L+ LVS + + K S Sbjct: 74 VGCNIIVRHLEQNL--------------SILLLAKNEQGYTNLVTLVSESF--KKRKNSS 117 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I E+ + GLI LTGG + + + EK L F LYV LQ Sbjct: 118 DIPYVDFDELLSFNTGLIALTGGC---LAQLLLEQDKETVEKLL----SAFDGHLYVELQ 170 Query: 188 RHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 RH G ++ E + ++ AY +PLVATN+ F + DYEA+D+L ++ + + +R Sbjct: 171 RH-GLNKELELEEALIDFAYQRNIPLVATNDVFFSNRSDYEAYDILTCISEGSYALENNR 229 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 ++T +HY K+ +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K Sbjct: 230 KKLTTEHYFKSVAEMEELFSDIPEAIYNTLVIAKRCSYMPRSRQPILPKFPCRE----NK 285 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E ELR +AVAGLE R+A + Y RL++EL+VI M ++GYFLIV+DFI+ Sbjct: 286 TENEELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIR 342 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 W+K N IPVGPGRGSGAGS+ A++L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ+ Sbjct: 343 WSKANGIPVGPGRGSGAGSIVAWSLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQE 402 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 +RD VI YVQ KYG+ VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P + Sbjct: 403 KRDLVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVN 460 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 PV+L QAI D ++ R +D + +LL+IS KLEG+YRH STHAAGIVI D+ L VP Sbjct: 461 PVTLSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVP 520 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 +Y D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + + K D+S + Sbjct: 521 VYYDPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDKKKFDISSVSLI 580 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L+ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y R Sbjct: 581 DQRTYEMLSRGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVAR 640 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK E Sbjct: 641 KHGLEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAE 700 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MDKQ+E F+ GA+KNG+ A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +YP Sbjct: 701 MDKQRELFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAIISYQTAYLKANYP 760 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF A M L +D+ +K+ F A+ + ++ P ++ +F +G I Y +AA++ Sbjct: 761 LEFFTALMNLNIDDRDKLNLFYHAAKFSGVAVLSPDISKSKAEFSIGGEHIRYGIAALRN 820 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG A I+ A + + + +F + +N+R LESL+ +G D +R QL +S Sbjct: 821 VGFAIAEGIVNARSSS-YKDIWEFIQNL-GHIINKRALESLIKSGTFDSVHKNRKQLYES 878 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 +D + +A KNR + +F H K LE N + E+E LGFY + Sbjct: 879 IDTLIYFAN---KNRQSNQAALFGHLDIL---KPKLENVEDFNEEEKLEHELFSLGFYLT 932 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HPL+ ++ +L+K+ I ES I+ A ++++ + + + +G R +T S+P Sbjct: 933 NHPLEKFRTLLKKLNIGFIGES------KTIKTAGVILNVRMRTSERG-RFVILTLSDPH 985 Query: 1025 KEYEANFF 1032 E F+ Sbjct: 986 NVSEIAFY 993 >gi|190571064|ref|YP_001975422.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357336|emb|CAQ54766.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 1106 Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/1028 (46%), Positives = 665/1028 (64%), Gaps = 54/1028 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSLLE ++ + ++ ++ PA+A+TD+ NLF +LEF++ A GIQ I Sbjct: 2 FIHLRVHSVYSLLESSVKIEELIGLCLQNKMPAVAVTDSGNLFGSLEFAEYAANKGIQLI 61 Query: 71 IGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC + + ++ NL SI+LL +GY L+ LVS + + K S Sbjct: 62 VGCNIIVRHLEQNL--------------SILLLAKNEQGYTNLVTLVSESF--KKRKNSS 105 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I E+ + GLI LTGG + + + EK L F LYV LQ Sbjct: 106 DIPYVDFDELLSFNTGLIALTGGC---LAQLLLEQDKETVEKLL----SAFDGHLYVELQ 158 Query: 188 RHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 RH G ++ E + ++ AY +PLVATN+ F + DYEA+D+L ++ + + +R Sbjct: 159 RH-GLNKELELEEALIDFAYQRNIPLVATNDVFFSNRSDYEAYDILTCISEGSYALENNR 217 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 ++T +HY K+ +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K Sbjct: 218 KKLTTEHYFKSVAEMEELFSDIPEAIYNTLVIAKRCSYMPRSRQPILPKFPCRE----NK 273 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E ELR +AVAGLE R+A + Y RL++EL+VI M ++GYFLIV+DFI+ Sbjct: 274 TENEELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIR 330 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 W+K N IPVGPGRGSGAGS+ A++L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ+ Sbjct: 331 WSKANGIPVGPGRGSGAGSIVAWSLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQE 390 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 +RD VI YVQ KYG+ VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P + Sbjct: 391 KRDLVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVN 448 Query: 486 PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 PV+L QAI D ++ R +D + +LL+IS KLEG+YRH STHAAGIVI D+ L VP Sbjct: 449 PVTLSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVP 508 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 +Y D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + + K D+S + Sbjct: 509 VYYDPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDKKKFDISSVSLI 568 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L+ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y R Sbjct: 569 DQRTYEMLSRGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVAR 628 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK E Sbjct: 629 KHGLEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAE 688 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MDKQ+E F+ GA+KNG+ A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +YP Sbjct: 689 MDKQRELFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAIISYQTAYLKANYP 748 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF A M L +D+ +K+ F A+ + ++ P ++ +F +G I Y +AA++ Sbjct: 749 LEFFTALMNLNIDDRDKLNLFYHAAKFSGVAVLSPDISKSKAEFSIGGEHIRYGIAALRN 808 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG A I+ A + + + +F + +N+R LESL+ +G D +R QL +S Sbjct: 809 VGFAIAEGIVNARSSS-YKDIWEFIQNL-GHIINKRALESLIKSGTFDSVHKNRKQLYES 866 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 +D + +A KNR + +F H K LE N + E+E LGFY + Sbjct: 867 IDTLIYFAN---KNRQSNQAALFGHLDIL---KPKLENVEDFNEEEKLEHELFSLGFYLT 920 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HPL+ ++ +L+K+ I ES I+ A ++++ + + + +G R +T S+P Sbjct: 921 NHPLEKFRTLLKKLNIGFIGES------KTIKTAGVILNVRMRTSERG-RFVILTLSDPH 973 Query: 1025 KEYEANFF 1032 E F+ Sbjct: 974 NVSEIAFY 981 >gi|307292876|ref|ZP_07572722.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1] gi|306880942|gb|EFN12158.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1] Length = 1178 Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/1041 (46%), Positives = 648/1041 (62%), Gaps = 31/1041 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FV L+V SS+++LEGA+ I + A PA AITD N L+ ++ FS G+QP Sbjct: 5 GFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDACKGEGVQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG + + D P P I L A GY L LVS +L ++ Sbjct: 65 VIGAMVGVARPDR-----PANAP-PVHDWIALYAQDAAGYDNLCALVSMAHLERPVEEVP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QR 188 I L+ L E T+GLI LT G G + R F + A + LF DRLY+ + +R Sbjct: 119 HISLAML-EGRTDGLIALTAGGEGALARLFAEDQPAAALAYAKRLEALFPDRLYIEICRR 177 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E +++ LAY LPLVATN + F +EAHDV++ +A S V DR Sbjct: 178 LDPVEGKAEPELLDLAYARNLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETPDRRTS 237 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +PD ++K +EM +F DLPEAL NT+ +A+RC+ PILP DI+ E + Sbjct: 238 SPDAWMKPAAEMKRLFEDLPEALANTLVVAQRCAVAAPKRKPILPSL----AGDIEGEAK 293 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR +A GLE RLA+ I + Y RL FE ++I +M F GYFLIVADFI+WAK Sbjct: 294 M-LREQAAEGLEARLAKAGIIDEEARKPYFDRLKFETDIIIQMGFPGYFLIVADFIKWAK 352 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +IPVGPGRGSGAGSV A+ALTITD+DPL+ LLFERFLNP+R+SMPDFDIDFC+ RR Sbjct: 353 DQDIPVGPGRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRG 412 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P P + Sbjct: 413 EVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWT 472 Query: 489 LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L+ ++ + FR D V RL++ + KLEG RH+STHAAG+VIGDRPLSQLVP+YR Sbjct: 473 LERSLNGVAEFRAEYDNDNQVRRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYR 532 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ LA RGV++DL+ + +DD Sbjct: 533 DPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVEIDLNSLGWDDPA 592 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 Y LL T+G+FQLES GMR+ L ++P DIIALVSLYRPGP+DNI ++ RKNG Sbjct: 593 VYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNG 652 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +E+I H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD Sbjct: 653 QEEIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDA 712 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+ RF+ G +++ I+ A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HYP EF Sbjct: 713 QRARFVEGCARSDIATGKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEF 772 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDN-----RIY 836 AASM ++ +K+ F D R+ + + P +N DF V GD+ + Sbjct: 773 YAASMAFDIHLTDKLTVFVDDMRRMGLACLAPDINRSQADFSVEAIEQEGDDPRLGFAVR 832 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y+L +KGVG ++ E A PF SL+DF R++ + LNRR LESL AGA D Sbjct: 833 YALGGLKGVGEKAMEQLVAEREAGGPFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGVY 892 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R + + + I A + R + +F + +D + + +++ R E Sbjct: 893 ADRAGVHAAAETILSVASSAAEARESGQGGLFGDVETPHAD-VRIPPHQTWSTADRMAQE 951 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGY----EESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + GFYFS HP+D Y+ + G K Y E VA N +AAMV + ++T++ Sbjct: 952 KDAFGFYFSAHPVDRYRHLAEARGAKSYGAICAEPVAEGGRANGVMAAMVEDVRWRETKR 1011 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G+R TFS+ + +++A+ F Sbjct: 1012 GARYAAATFSDSSGQFQASCF 1032 >gi|260753893|ref|YP_003226786.1| DNA polymerase III subunit alpha [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553256|gb|ACV76202.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 1174 Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/1042 (44%), Positives = 645/1042 (61%), Gaps = 33/1042 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L++ S +++LEGA+ +I PA I D N L+ + FS G+QPI Sbjct: 6 FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKKDGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L + + + +P L +GY L LVS +L + Sbjct: 66 IGSLLAVARPLRGGEASGQELKIDWLP---LYAQDEDGYNNLCALVSHAHLGRPLELPPH 122 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + +L++ ++GL+ LTGG G + R AE L +K+F DRLY+ L R Sbjct: 123 VSMEFLEQ-HSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYIELSRRS 181 Query: 191 GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + ++ LAY ++PLVATN FL + + AHD ++ +A S V DR + Sbjct: 182 EEIEEAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSPDRRHSS 241 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-EKECDDIQKEEE 308 P+ ++K+ EM +F D+PEA++N++ IA+RC+ V PILP ++E + + Sbjct: 242 PEAWMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPVRKPILPSLAGDREGETLM---- 297 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR A AGLE RLA A+ + Y +RL +ELN+I M F GYFLIVADFI+WAK Sbjct: 298 --LRKDAWAGLEARLA--AMTTPVDRKAYEERLQYELNIIENMGFPGYFLIVADFIKWAK 353 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N IPVGPGRGSGAGSV A+ALTIT++DPLR LLFERFLNP+R+SMPDFDIDFC+ RR Sbjct: 354 SNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRS 413 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+ + P + Sbjct: 414 EVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQASDPWT 473 Query: 489 L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L +A+ A + V RLL+++ KLEGL RH+STHAAG+VIGDRPL QLVP+YR Sbjct: 474 LDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQLVPLYR 533 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++ L RGV+VDL IP DD Sbjct: 534 DPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIPLDDEA 593 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 + LL T+G+FQLES GMR+ L ++P EDIIALV+LYRPGP+DNI + RKNG Sbjct: 594 VFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFGARKNG 653 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 E+IV HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+ EMD Sbjct: 654 GEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQSEMDA 713 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+ RF+ G+ K+ I++ A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HY EF Sbjct: 714 QRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAHYRAEF 773 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 AA+M +M +K++ F D R+ ++ +PP +N DF V D + Y+L A+KGVG Sbjct: 774 YAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGALKGVGE 833 Query: 848 TTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 I E + F SL+DF +R++ + LNRR LESL AGA D G R + QS + Sbjct: 834 KAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAVKQSSE 893 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 I A + + R + +F E+ I L + + + + R E+ GF+FS H Sbjct: 894 MIIGTAANIHRMRKSGQGGLFGMEEMAMP-SIKLPEDKIWSLTERMNAEKEAFGFFFSSH 952 Query: 967 PLDVYKPILRKMGIKGY--------------EESVATIRGNNI--RLAAMVVSKQQKKTR 1010 P+D Y+ +L + I+ +E+ R I ++AAM+ + + + Sbjct: 953 PIDNYRSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVRWRDSA 1012 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 +G R V S+ + ++ A+ F Sbjct: 1013 RGRRYMMVAASDASGQFFASCF 1034 >gi|283856496|ref|YP_163273.2| DNA polymerase III subunit alpha [Zymomonas mobilis subsp. mobilis ZM4] gi|283775500|gb|AAV90162.2| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 1174 Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/1042 (44%), Positives = 644/1042 (61%), Gaps = 33/1042 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L++ S +++LEGA+ +I PA I D N L+ + FS G+QPI Sbjct: 6 FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKKDGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L + + + +P L +GY L LVS +L + Sbjct: 66 IGSLLAVARPLRGGEASGQELKIDWLP---LYAQDEDGYNNLCALVSHAHLGRPLELPPH 122 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + +L++ ++GL+ LTGG G + R AE L +K+F DRLY+ L R Sbjct: 123 VSMEFLEQ-HSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYIELSRRS 181 Query: 191 GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + ++ LAY +PLVATN FL + + AHD ++ +A S V DR + Sbjct: 182 EEIEEAAEEGLIDLAYDRNIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSPDRRHSS 241 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-EKECDDIQKEEE 308 P+ ++K+ EM +F D+PEA++N++ IA+RC+ V PILP ++E + + Sbjct: 242 PEAWMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPVRKPILPSLAGDREGETLM---- 297 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR A AGLE RLA A+ + Y +RL +ELN+I M F GYFLIVADFI+WAK Sbjct: 298 --LRKDAWAGLEARLA--AMTTPVDRKAYEERLQYELNIIENMGFPGYFLIVADFIKWAK 353 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N IPVGPGRGSGAGSV A+ALTIT++DPLR LLFERFLNP+R+SMPDFDIDFC+ RR Sbjct: 354 SNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRS 413 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+ + P + Sbjct: 414 EVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQASDPWT 473 Query: 489 L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L +A+ A + V RLL+++ KLEGL RH+STHAAG+VIGDRPL QLVP+YR Sbjct: 474 LDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQLVPLYR 533 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++ L RGV+VDL IP DD Sbjct: 534 DPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIPLDDEA 593 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 + LL T+G+FQLES GMR+ L ++P EDIIALV+LYRPGP+DNI + RKNG Sbjct: 594 VFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFGARKNG 653 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 E+IV HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+ EMD Sbjct: 654 GEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQSEMDA 713 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+ RF+ G+ K+ I++ A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HY EF Sbjct: 714 QRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAHYRAEF 773 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 AA+M +M +K++ F D R+ ++ +PP +N DF V D + Y+L A+KGVG Sbjct: 774 YAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGALKGVGE 833 Query: 848 TTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 I E + F SL+DF +R++ + LNRR LESL AGA D G R + QS + Sbjct: 834 KAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAVKQSSE 893 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 I A + + R + +F E+ I L + + + + R E+ GF+FS H Sbjct: 894 MIIGTAANIHRMRKSGQGGLFGMEEMAMP-SIKLPEDKIWSLTERMNAEKEAFGFFFSSH 952 Query: 967 PLDVYKPILRKMGIKGY--------------EESVATIRGNNI--RLAAMVVSKQQKKTR 1010 P+D Y+ +L + I+ +E+ R I ++AAM+ + + + Sbjct: 953 PIDNYRSLLSSLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVRWRDSA 1012 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 +G R V S+ + ++ A+ F Sbjct: 1013 RGRRYMMVAASDASGQFFASCF 1034 >gi|241761529|ref|ZP_04759616.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373837|gb|EER63370.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1174 Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/1044 (44%), Positives = 647/1044 (61%), Gaps = 37/1044 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L++ S +++LEGA+ +I PA I D N L+ + FS G+QPI Sbjct: 6 FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKKDGVQPI 65 Query: 71 IGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG L + ++ + K + + L +GY L LVS +L + Sbjct: 66 IGSLLAVARPLRGGEASGQELKIDW-----LSLYAQDEDGYNNLCALVSHAHLGRPLELP 120 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + + +L++ ++GL+ LTGG G + R AE L +K+F DRLY+ L R Sbjct: 121 PHVSMEFLEQ-HSQGLLALTGGKEGALARLMAEEQQSEAEAYLTLLQKIFPDRLYIELSR 179 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ LAY ++PLVATN FL + + AHD ++ +A S V DR Sbjct: 180 RSEEIEEAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSPDRRH 239 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-EKECDDIQKE 306 +P+ ++K+ EM +F D+PEA++N++ +A+RC+ V PILP ++E + + Sbjct: 240 SSPEAWMKSGEEMARLFEDIPEAIQNSLVVAQRCAVAAPVRKPILPSLAGDREGETLM-- 297 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR A AGLE RLA A+ + Y +RL +ELN+I M F GYFLIVADFI+W Sbjct: 298 ----LRKDAWAGLEARLA--AMTTPVDRKAYEERLQYELNIIENMGFPGYFLIVADFIKW 351 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N IPVGPGRGSGAGSV A+ALTIT++DPLR LLFERFLNP+R+SMPDFDIDFC+ R Sbjct: 352 AKSNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFCETR 411 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+ + P Sbjct: 412 RSEVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQASDP 471 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +L +A+ A + V RLL+++ KLEGL RH+STHAAG+VIGDRPL QLVP+ Sbjct: 472 WTLDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQLVPL 531 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++ L RGV+VDL IP DD Sbjct: 532 YRDPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIPLDD 591 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + LL T+G+FQLES GMR+ L ++P EDIIALV+LYRPGP+DNI + RK Sbjct: 592 EAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFGARK 651 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG E+IV HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+ EM Sbjct: 652 NGGEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQSEM 711 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D Q+ RF+ G+ K+ I++ A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HY Sbjct: 712 DAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAHYRA 771 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF AA+M +M +K++ F D R+ ++ +PP +N DF V D + Y+L A+KGV Sbjct: 772 EFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGALKGV 831 Query: 846 GTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G I E + F SL+DF +R++ + LNRR LESL AGA D G R + QS Sbjct: 832 GEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAVKQS 891 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 + I A + + R + +F E+ I L + + + + R E+ GF+FS Sbjct: 892 SEMIIGTAANIHRMRKSGQGGLFGMEEMAMP-SIKLPEDKIWSLTERMNAEKEAFGFFFS 950 Query: 965 GHPLDVYKPILRKMGIKGY--------------EESVATIRGNNI--RLAAMVVSKQQKK 1008 HP+D Y+ +L + I+ +E+ R I ++AAM+ + + Sbjct: 951 SHPIDNYRSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVRWRD 1010 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 + +G R V S+ + ++ A+ F Sbjct: 1011 SARGRRYMMVAASDASGQFFASCF 1034 >gi|148555255|ref|YP_001262837.1| DNA polymerase III subunit alpha [Sphingomonas wittichii RW1] gi|148500445|gb|ABQ68699.1| DNA polymerase III, alpha subunit [Sphingomonas wittichii RW1] Length = 1155 Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/1036 (45%), Positives = 635/1036 (61%), Gaps = 30/1036 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L++ S+Y++LEGA+ I PA A+TD N L++A+ FS A G+QP Sbjct: 5 SFVPLRIFSAYTMLEGAIDPKAIAKHAKKLGFPAAALTDRNGLYAAMAFSDGAKKEGVQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG L I ++ + + L GY L LVS +L + Sbjct: 65 VIGTMLAIRRPGIDQLI---------IDWLALYAQDMTGYDNLCALVSAAHLERPVHEDA 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + LS L E T+GLI LT G G + R + A + LF RLYV L R Sbjct: 116 HVPLSAL-EGRTDGLIALTAGGEGALTRLLAAEQAGAAASYADKLEALFPGRLYVELAR- 173 Query: 190 RG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RG + E ++ LAY LPLVATN + F E + AHD ++ +A S+ + +RPR Sbjct: 174 RGNADEEAAEEALIDLAYARNLPLVATNPACFAEPEFHAAHDAMLCIASSSYIDTAERPR 233 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +PD ++K +EM +F D+PEAL NT+ +A+RC+ PILP D + E Sbjct: 234 SSPDLWMKPAAEMAKLFEDIPEALANTLVVAQRCAVAAPYRKPILPSL----AGDREGEA 289 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E LR A GLE+RL + + Q Y RL FE +I +M F GYFLIVADFI+WA Sbjct: 290 EA-LRRDAREGLEMRLEKLGVTDAEQRQAYFDRLAFETEIIIKMGFPGYFLIVADFIKWA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K ++IPVGPGRGSGAGSV A+ALTITD+DPLR LLFERFLNP+R+SMPDFDIDFC+ RR Sbjct: 349 KDHDIPVGPGRGSGAGSVVAWALTITDLDPLRLGLLFERFLNPERVSMPDFDIDFCETRR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVIRYVQ KYG ++VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P P Sbjct: 409 GEVIRYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPW 468 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L +A+ D V RLL+++ KLEGL RH+STHAAG+VIGDR L LVP+Y Sbjct: 469 TLDRALNGVPELAAEYKGDIEVRRLLDLAMKLEGLPRHSSTHAAGVVIGDRRLDALVPLY 528 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ FL QRG+ VDL +P+DD Sbjct: 529 RDPRSDMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQFLNQRGIAVDLDSLPWDDP 588 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 E Y LL T+G+FQLES GMR+ L ++P C EDIIALVSLYRPGP+DNI + RKN Sbjct: 589 EVYALLQRGDTVGVFQLESEGMRRTLAAVRPTCFEDIIALVSLYRPGPMDNIPTFGARKN 648 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+E+I HPL++ +LKET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD Sbjct: 649 GREEIEYPHPLLEGILKETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMD 708 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ RF+ G + N I+ A +F+L+ KFA YGFNKSHAAAYA+++Y TAW+K H+ E Sbjct: 709 AQRSRFVEGCAANDIAAAKANELFDLIDKFAGYGFNKSHAAAYALVAYHTAWLKAHHKAE 768 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIY--YSLAAI 842 F AASM +M +K+ F D R+ IQ + P +N +F V D ++ Y+L A+ Sbjct: 769 FYAASMCYDMAQTDKLAIFIDDMRRMGIQCLGPCINHSEAEFAVEQQDEELFVRYALGAL 828 Query: 843 KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 KGVG ++EA A PF SLEDF R+D ++LNRR LESL GA D R + Sbjct: 829 KGVGEKAMEQLVEARKAKGPFGSLEDFADRIDPRQLNRRQLESLAGGGAFDEIETERAGI 888 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 S + I +A + R + +F + I +++ + R E+ GF Sbjct: 889 FASAELILAHASSAAEQRESGQGGLFGDSPAALA-PIRIDRGLHWTLADRMAAEKESFGF 947 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESV---ATIRGNNIR--LAAMVVSKQQKKTRKGSRIG 1016 YFS HP D + + G + + A + G + ++A++ + + + KG R Sbjct: 948 YFSSHPTDQVRHLAEANGARSFAALCALPAPVDGGRVNSVMSALIEDARWRTSAKGKRYM 1007 Query: 1017 WVTFSEPAKEYEANFF 1032 T S+ + ++ A F Sbjct: 1008 MATCSDSSGQFIATCF 1023 >gi|262277280|ref|ZP_06055073.1| DNA polymerase III subunit alpha [alpha proteobacterium HIMB114] gi|262224383|gb|EEY74842.1| DNA polymerase III subunit alpha [alpha proteobacterium HIMB114] Length = 1139 Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/1046 (43%), Positives = 679/1046 (64%), Gaps = 45/1046 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S ++L++HS +S+ EGA+ ++ +++ A+ + D+ NL ALEFS + GI Sbjct: 2 SAEAINLKIHSQFSICEGAIKIDKLVNYCKEHSVTAVGLCDSENLSGALEFSSQLKKEGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGK 126 QP+IG ++ I K GK + T L GY+ L++L S+ YL L + Sbjct: 62 QPLIGTKIYI------KENVDGKITYGTAS---LYAKNQIGYKNLLKLSSKSYLDLQEHD 112 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I L+ L++ EG+I+L GGS N + + K +F D +Y+ + Sbjct: 113 DKPNINLNILKKY-HEGIIILIGGSFSFFSDLLVKNKDEYCFNEVKKLKDIFNDNIYIEI 171 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QRH +++ E ++++L+ +PL+ATN +L ++ Y AHD + V V++K+R Sbjct: 172 QRHNESHEKQLEKKLIKLSSDTSIPLIATNEVFYLEQDSYNAHDAFICVGEKNYVNEKNR 231 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + HY K SE ++F+DLP+ALEN + ++ + P+LP F E D Q Sbjct: 232 LKYSNQHYFKKTSEFENLFADLPDALENNKNFKYKFNYFPKKSNPLLPSFSENGKDTNQI 291 Query: 306 EEENELRNKAVAGLEVRLAQ------GAIA-KGYHAQDYRQRLDFELNVIARMKFSGYFL 358 L++KA GLE RL + GA K ++Y RL++E+NVI++MKFSGYFL Sbjct: 292 -----LKDKAEKGLEERLEKYVYPRLGATTDKDEIKKNYFDRLNYEVNVISKMKFSGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+D+I WAK NNIPVGPGRGSGAGS+ A+ L+ITD+DP+RF L+FERFLNPDR+SMPDF Sbjct: 347 IVSDYINWAKSNNIPVGPGRGSGAGSLVAWCLSITDLDPIRFGLIFERFLNPDRISMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFCQ+ RDEVI YV++KY + +VAQIITFG LQA+ ALRD+GR L +PY +VD+LCK+ Sbjct: 407 DIDFCQEGRDEVINYVKDKYPN-KVAQIITFGKLQARMALRDIGRVLGLPYGRVDQLCKM 465 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP DP+ P+SL ++IA + R +EA DP + +L+ + KLEGLYR+ +THAAG+VIGDR Sbjct: 466 IPFDPSRPLSLAESIAIEPRLQEAEKNDPIIKKLINYALKLEGLYRNVATHAAGVVIGDR 525 Query: 538 PLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 L ++VP+Y+D+ S LP VTQF+MK E+AGL+KFDFLGLKTLT+++K+++F+ + Sbjct: 526 NLDEIVPLYKDLSSTLPIPVTQFDMKSSEEAGLVKFDFLGLKTLTVIKKTIEFIQKDKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 D+S I D +T+ LL++ T+GIFQLESSGMR+ L+ ++P+ EDIIALV+LYRPGP+ Sbjct: 586 FDISKINLSDQKTFELLSSGETMGIFQLESSGMREVLKQLKPNKFEDIIALVALYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 NI Y +RK+ KE++ IHP ++ +LKET GVIIYQEQVMQIAQ LS +S S+AD+LR+ Sbjct: 646 QNIPTYISRKHEKEEVDYIHPKLENILKETYGVIIYQEQVMQIAQALSSFSASKADILRK 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM++QK+ FI GA KNGIS+ + IF+L+ KFA YGFNKSHAAAYA+I++Q Sbjct: 706 AMGKKKSVEMERQKKDFIDGAVKNGISRDQVIYIFQLVEKFAQYGFNKSHAAAYALIAFQ 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++KTHYP+ F ASM E+ N +K+ F ++ ++ I I PP++N +F D I Sbjct: 766 TAYLKTHYPIYFFCASMNTELSNTDKLNLFYEELKRLKIDIRPPNINFSYAEFLPRDKTI 825 Query: 836 YYSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 YY+L+A+K VG T ++ + E + F+S+ +F SRV+SK LN+ LE L+ +G+LD Sbjct: 826 YYALSAVKAVGYDTISKIVYEREKNGKFNSISEFLSRVESKNLNKLQLEGLIKSGSLDIL 885 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV----ENSSV 950 +R +L +++ K ++ +K N+ + +F++E +D+ +++F++ +N + Sbjct: 886 DNNRKKLFENVPEYIKQSKSSDKVNDNEQDQLFSNEME--NDQTNIQEFNILDWDKNEKI 943 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV----VSKQQ 1006 + E E +GF+ HPL +L+K + ++E ++ NN AM+ +S Q+ Sbjct: 944 KKEFES--IGFFVGEHPLKSNLQVLKKYNVSSHQE----LKNNNALKDAMIAGTLISIQE 997 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 KKT KG+ + + YE F Sbjct: 998 KKTAKGNPYAIIKLVDLGSMYELFIF 1023 >gi|68171940|ref|ZP_00545254.1| DNA polymerase III alpha subunit [Ehrlichia chaffeensis str. Sapulpa] gi|67998637|gb|EAM85376.1| DNA polymerase III alpha subunit [Ehrlichia chaffeensis str. Sapulpa] Length = 1074 Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/989 (46%), Positives = 647/989 (65%), Gaps = 52/989 (5%) Query: 55 ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 +LEFS A + G+QPIIGC N+ M+ G + + +VLLV GY ++ Sbjct: 3 SLEFSDYASSLGVQPIIGC--------NIMMSYNGDS----IGELVLLVKDQIGYNNIVN 50 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLL 172 LVS + Q + R+ L L ++ +G+I+LTGG G + + N + +K LL Sbjct: 51 LVSNSFKDSQSNKVNRVDLEKLIDL-KDGIIVLTGGHDGFLSQLLLGNVIDYGIIDKLLL 109 Query: 173 TFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 F LYV LQRH ++ E +V AY +LPLVATN+ LF + D+ AHDVL Sbjct: 110 AFNG----NLYVELQRHGMEEEKIIEKTLVNFAYEKDLPLVATNDVLFAKKNDFLAHDVL 165 Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 ++ ++Q+ R T +HY K+ EM +F D+PEA+ NTV IA+RCSF+ + P+ Sbjct: 166 SCISDGNYIAQEGRKMFTEEHYFKSSDEMYRLFKDIPEAVSNTVLIAQRCSFMPETRKPM 225 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 LP F C K E EL ++A+ GL+ RL +++ Y +RL +EL++I M Sbjct: 226 LPHF---PCSS-GKNESQELISQAINGLDNRLKSKSLSTE-QVSKYYERLHYELDIIISM 280 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 ++GYFLIV+DFI W+K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPD Sbjct: 281 DYAGYFLIVSDFICWSKRNDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPD 340 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFDIDFCQ++RD VI YV+ KYG+ VA IITFG LQAKA LRDVGR +QMPY Q Sbjct: 341 RISMPDFDIDFCQEKRDYVIEYVRKKYGY--VAHIITFGKLQAKAVLRDVGRVMQMPYFQ 398 Query: 472 VDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 VDR+CK+IP++P PV+L +AI D ++ + D +V +LLEIS KLEGLYRH S HAA Sbjct: 399 VDRICKMIPHNPVKPVTLSEAIEMDKNLQKEQDDDETVAKLLEISLKLEGLYRHVSIHAA 458 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI DR L +L+P+Y D S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ + + Sbjct: 459 GIVICDRELEELLPLYYDSTSSLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVN 518 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + G VD+S IP +D +TY +L+ ++G+FQLESSGMR+ + ++PD I DIIAL+SLY Sbjct: 519 RGGHSVDISRIPLNDRKTYEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLY 578 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+DNI +Y RK+G EK IHP+++ +L+ET GVIIYQEQVM+IA++++GYSL EA Sbjct: 579 RPGPMDNISIYIARKHGFEKPDYIHPILEDVLRETFGVIIYQEQVMEIAKIMAGYSLGEA 638 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIKEEMD Q+ FI+GA NGI + A IF+L+AKFA YGFNKSHAAAYA Sbjct: 639 DLLRRAMGKKIKEEMDNQRRTFINGAVSNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYA 698 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +ISYQTA++K +Y +EF ASM L++ + +K++ C A+ I+I+PP +N+ V F + Sbjct: 699 LISYQTAYLKANYTLEFFTASMNLDIMDKDKLEMLCHQAKLHGIEILPPDINSSKVLFTI 758 Query: 831 -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 G + I Y+L A+K VG +A+ I++ D + + DF RV +K +++R+LES++ AG Sbjct: 759 EGASSIRYALGALKNVGQHSAKEIVD---DVAYKDIWDFIDRVSTKCVHKRILESIIKAG 815 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKF 943 LD +R QL +S + + +E N+ N + N F+ H K + +D T E+ Sbjct: 816 VLDSIHSNRKQLFES---VFLFLDIIEYNKYNANFNQFSLFNDKNHYKLSETDDWTKEE- 871 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + NE +GFY + HP++ YK +L K+ I G+ NN+ + ++S Sbjct: 872 -------KLNNEFSSIGFYLNHHPMENYKYLLDKLNI-GFIHYDDKSSYNNVIVG--IIS 921 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++ + VT S+P +E F+ Sbjct: 922 NVKVRSTNKDKFAVVTLSDPFNIHEIVFY 950 >gi|94498252|ref|ZP_01304812.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58] gi|94422254|gb|EAT07295.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58] Length = 1181 Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/1046 (45%), Positives = 638/1046 (60%), Gaps = 37/1046 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L++ SS+++LEGA+ I + A PA AITD N L+ ++ FS G+QP Sbjct: 5 AFVPLRIFSSFTMLEGAIDPKKIAKQARALGFPAAAITDRNGLYGSMAFSDACKGEGVQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG L + Q I L A GY + LVS +L ++ Sbjct: 65 IIGAMLGVLRPGRPANAAQ------VHDWITLYAQDARGYDNICALVSMAHLDRPVEEVP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QR 188 + L L E T+G+I LT G G + R F + A + LF DRLYV + +R Sbjct: 119 HVTLDAL-EGRTDGVIALTAGGEGALARLFAEDQPDAALAYAERLEALFPDRLYVEICRR 177 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E+ ++ LAY LPLVATN + F +EAHDV++ +A S V DR + Sbjct: 178 LDPVEGKAEAALLDLAYDRGLPLVATNPTCFTEPHFHEAHDVMLCIADSAYVDTADRRKS 237 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +PD ++K +EM +F DLPEAL NT+ +A+RC+ PILP DI+ E Sbjct: 238 SPDAWMKPAAEMKRLFEDLPEALANTLVVAQRCAVAAPKRKPILPSL----AGDIEGEAA 293 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR++A GLE RL + I + Y +RL FE ++I +M F GYFLIVADFI+WAK Sbjct: 294 M-LRDQAAEGLEARLEKAGILGEEMRRPYYERLKFETDIIIQMGFPGYFLIVADFIKWAK 352 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + +IPVGPGRGSGAGS+ A+ALTITD+DPL+ LLFERFLNP+R+SMPDFDIDFC+ RR Sbjct: 353 EQDIPVGPGRGSGAGSLVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRG 412 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P P + Sbjct: 413 EVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWT 472 Query: 489 LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L+ ++ S F+ D V RL++ + KLEG RH+STHAAG+VIGDRPLSQLVP+YR Sbjct: 473 LERSLNGVSEFKAEYDNDNQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYR 532 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ L+ RGV VDL + +DD Sbjct: 533 DPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLSARGVTVDLDTLAWDDTA 592 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 Y LL T+G+FQLES GMR+ L ++P DIIALVSLYRPGP+DNI ++ RKNG Sbjct: 593 VYDLLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNG 652 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +E I H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD Sbjct: 653 QEDIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDA 712 Query: 728 QKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ RF+ G A+K+ I A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HYP E Sbjct: 713 QRARFVEGCAAKSDIPAAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAE 772 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GDNR----I 835 F A SM ++ EK+ F D R+ + + P +N DF V D R + Sbjct: 773 FYAGSMAFDIHLTEKLTVFVDDMRRMGLTCLAPDINRSEADFTVEPVAYEGEDARLGFAV 832 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y+L +KGVG ++E + F SL+DF R++ + LNRR LESL AGA D Sbjct: 833 RYALGGLKGVGEKAMEQLVEERNKGGAFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGI 892 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 R + + + I A R + +F + +D + + + R Sbjct: 893 HADRAGVHAAAETILSVASSNAAARESGQGGLFGDVETPHAD-VRIPPHQAWTVADRMAQ 951 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGY--------EESVATIRGNNIRLAAMVVSKQQ 1006 E+ GFYFS HP+D YK + G + Y A R I +AAMV + Sbjct: 952 EKEAFGFYFSAHPVDRYKHLADARGARSYGLICQSPMPAPNAEGRAMTI-MAAMVEDVRW 1010 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++T++G+R TFS+ + +++A+ F Sbjct: 1011 RETKRGARYASATFSDQSGQFQASCF 1036 >gi|330814006|ref|YP_004358245.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487101|gb|AEA81506.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 1140 Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/1035 (43%), Positives = 671/1035 (64%), Gaps = 31/1035 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F H +VH+ YS+ EGAL + ++ ++ ++ I+D+ N+ LEFSQ+ AG QPI Sbjct: 7 FNHFKVHTQYSICEGALKIVDLAVHCTSNNVASVGISDSFNMCGVLEFSQEISKAGCQPI 66 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG Q++ +N + GK I L+ GY+ L++L S YL + + Sbjct: 67 IGTQINFSFSEN-NLEKMGK--------ISLVAKNDTGYKNLLKLSSSSYLSIEKNEDPH 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + ++GLI+L G S + N+ +E L +K F LY+ +QRH Sbjct: 118 CDIQELID-NSDGLIVLVGASHSLLSSLVLENNILDSELLLQKIQKFFEGNLYIEIQRHN 176 Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ E+Q++ + +P++AT+ +L ++ YEAHD + V T V+ R R + Sbjct: 177 EPHEQALETQLLYFSEKFSIPIIATHEVFYLKKDMYEAHDAYICVGQKTYVNDIKRLRYS 236 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 +HY K+ EM +F DLPEALEN +A RCS+ P+LP F E ++ + Sbjct: 237 EEHYFKSDYEMSELFLDLPEALENNKNLALRCSYRPLTSKPMLPNF-NTESSNVN----D 291 Query: 310 ELRNKAVAGLEVRLAQGAI-------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 EL+ A GLE RL + + Q Y++RL++E+ +I++MKFSGYFLIV+D Sbjct: 292 ELKINANKGLEDRLKNFILINIADEDQRLATKQVYKERLNYEIEMISKMKFSGYFLIVSD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I+WAK NNIPVGPGRGSGAGS+ A+ L+ITD+DP++F L+FERFLNPDR+SMPDFDIDF Sbjct: 352 YIKWAKSNNIPVGPGRGSGAGSLVAWCLSITDLDPIKFGLIFERFLNPDRISMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+ RD+VI YV++KY + +VAQIITFG LQA+ ALRD+GR + +PY +VD+L K+IP D Sbjct: 412 CQEDRDKVINYVKDKYKN-KVAQIITFGKLQARMALRDIGRVIGLPYGRVDQLSKMIPFD 470 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P+ P++L +++A + R +EA+ DP++++L+ ++ KLEGL+R+ +THAAGIVIGD+ L++ Sbjct: 471 PSRPLTLAESVAMEPRLQEAQKEDPTIEKLINLALKLEGLFRNIATHAAGIVIGDKNLTE 530 Query: 542 LVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 +VP+Y+D S +P VTQF+M W E+AGL+KFDFLGLKTLT+++K+++ + + K+D+ Sbjct: 531 IVPLYKDHDSSIPIPVTQFDMNWSEQAGLVKFDFLGLKTLTVIKKTIELIEKDSQKLDIE 590 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL++ T+GIFQLES+GMR+ L+ M P+ EDIIALV+LYRPGP+ NI Sbjct: 591 KIPLDDSKTFELLSSGETMGIFQLESAGMREVLKQMIPNKFEDIIALVALYRPGPMQNIP 650 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 YNNRK+G E+ +HP I+ +LKET GVIIYQEQVMQIAQ LSG+S +AD+LR+AMGK Sbjct: 651 SYNNRKHGLEEPDYLHPKIENILKETYGVIIYQEQVMQIAQALSGFSAGKADILRKAMGK 710 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K EMD+QK+ FI GA KN I K AV IF+L+ KFA YGFNKSHAAAYA+I+YQTA++ Sbjct: 711 KKSAEMDRQKKDFIEGAIKNDIPKEQAVYIFQLVEKFAQYGFNKSHAAAYALIAYQTAYL 770 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 KTHYP+ F +ASM++EM N +K+ +F ++ ++ +I++ P +N DF D I+Y+L Sbjct: 771 KTHYPLSFFSASMSMEMSNTDKLNQFYEELKRLSIKVHNPCINHCFADFVPKDGTIFYAL 830 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 + IK VG +++ E + F S+EDF RV SK +N+ LE L+ AGA DC +R Sbjct: 831 SGIKAVGFEAISNVIKEREENGKFLSMEDFLKRVSSKDINKLQLEGLIKAGAFDCIDKNR 890 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQR 957 +L +++ I K ++ ++N N+F + F T+ E ++ E E Sbjct: 891 SKLYENVPEIIKQSKSYDENLQVDQINLFESQTNDNFKINFTVHPAWDEPEKIKREFES- 949 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +GF+ S HPL YK IL + ++ N L+ V++ Q+KKT KG Sbjct: 950 -IGFFVSEHPLKNYKHILDNYSVVQFQSFSDNKNINECMLSGTVMAIQEKKTAKGMPFAI 1008 Query: 1018 VTFSEPAKEYEANFF 1032 V FS+ ++ +E F Sbjct: 1009 VKFSDLSRMFEFFIF 1023 >gi|332184948|ref|ZP_08386697.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17] gi|332014672|gb|EGI56728.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17] Length = 1157 Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/1040 (45%), Positives = 637/1040 (61%), Gaps = 38/1040 (3%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 L++ SS+++L+GA+ I + A+ PA +TD N L++A+ FS A AG+QPIIG Sbjct: 3 LRIFSSFTMLDGAIDPKAIAAQAKANAFPAAGLTDRNGLYAAMAFSDAAKKAGVQPIIGT 62 Query: 74 QLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 L + DM D++ P V I L GY L LVS +L + + Sbjct: 63 MLGVARPDMPDSVT---------PVVDWIALYAQDMTGYDNLCALVSAAHLERPIELAAH 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRH 189 + L + T GLI LT G G I R F A+ + +FGDRLY+ L +R Sbjct: 114 VGFDTLGKFST-GLIALTAGGEGGIARLFAEGQPDRAKAYCDRLQAMFGDRLYIELARRD 172 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + E ++ LAY +LPLVATN F +AHD ++ +A+ST V DRP+ + Sbjct: 173 DPTEIAAEQDLIDLAYDRDLPLVATNPCCFADSGFRDAHDAMLCIANSTYVEMDDRPKSS 232 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P+ +LK M +F+DLPEA++NT+ +A+RC+ + PILP ++ E Sbjct: 233 PEAWLKPAEVMKQLFADLPEAIDNTLVVAQRCAVMAPWRKPILPSLAGD-----REGEAA 287 Query: 310 ELRNKAVAGLEVRL-----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LR A AGLE RL +G G+ + Y +RL FE+++I +M F GYFLIVADFI Sbjct: 288 MLRRDATAGLEARLDRIAELEGEGEPGWR-EAYHERLTFEVDIIIQMGFPGYFLIVADFI 346 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK ++IPVGPGRGSGAGSV A+ALTITD+DPL+ LLFERFLNP+R+SMPDFDIDFC+ Sbjct: 347 KWAKDHDIPVGPGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCE 406 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR EVIRYVQ KYG ++VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P Sbjct: 407 TRRGEVIRYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPT 466 Query: 485 HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 P L+ A+ + D V RLL+++ KLEGL RH+STHAAG+VIGDRPL+QLV Sbjct: 467 DPWDLKRALNGVPELAKEYANDNQVRRLLDLATKLEGLPRHSSTHAAGVVIGDRPLAQLV 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+YRD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ L +RGV VDL + + Sbjct: 527 PLYRDPRSDMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQLLRKRGVDVDLGALAW 586 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY LL T+G+FQLES GMR+ L ++P DIIALVSLYRPGP+DNI + Sbjct: 587 DDEATYALLQKGDTVGVFQLESEGMRRTLSAVRPTNFGDIIALVSLYRPGPMDNIPSFGR 646 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK G E+I+ HPL++ +L ET G+ +YQEQVMQ AQ+L+GYSL AD+LRRAMGKK+K Sbjct: 647 RKQGTEEIIYPHPLLEQILSETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKVKA 706 Query: 724 EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMD Q+ F+ G + NGI A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H Sbjct: 707 EMDAQRAIFVKGCQEVNGIPAQKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAH 766 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYS 838 +P EF AASM +M +K+ F DAR+ + ++PP +N +F V + Y+ Sbjct: 767 HPHEFYAASMCYDMALTDKLAIFVDDARRMGVTMLPPCINASQAEFDVEPYEDGLAVRYA 826 Query: 839 LAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L A+K VG + ++E A F SL+ RVD + +N+R LE+L AGA D + Sbjct: 827 LGALKSVGEGAMEKLVVEREAGGAFASLDALAKRVDPRLMNKRQLETLASAGAFDGIEAN 886 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R + + + A + RT+ +F E D I L S R E E+ Sbjct: 887 RAGVHAVAETVLAIAARTHEGRTSGQGGLFG-ETEVAGDAIKLPSGVRWTLSQRMEQEKE 945 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGY---EESVATIRGNNI--RLAAMVVSKQQKKTRKG 1012 GFYFS HP+D + I + G + Y E + G I +AA+V + + + +G Sbjct: 946 AFGFYFSAHPVDRHAHIAKMHGARTYTSLTELIIPDDGARIGATMAALVEDARWRTSARG 1005 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 R S+ ++ A F Sbjct: 1006 KRYMMAQLSDATGQFLATCF 1025 >gi|87199787|ref|YP_497044.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans DSM 12444] gi|87135468|gb|ABD26210.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans DSM 12444] Length = 1215 Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/1080 (42%), Positives = 662/1080 (61%), Gaps = 65/1080 (6%) Query: 4 YLEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 YL P +FV L++ SSY++L+GA+ I A PA AITD N L+ ++ +++ Sbjct: 16 YLVHMPHAAFVPLRIFSSYTMLDGAIDPKAIAKTAAERGFPAAAITDRNGLYGSVAYAKA 75 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 G+QP+IG L + + PT+ + L A GY L LVSR +L Sbjct: 76 CKDMGVQPVIGTMLAVARPERDGAATGFGPAAPTIDWLALYAQDARGYDNLCHLVSRAHL 135 Query: 122 LDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + + + L+ L +G T+GLI LT S G + + AE + +LF + Sbjct: 136 DRPLEFAPHVVLADL--VGHTDGLICLTAASEGALAQLLAGGQQSAAEAYVDRLLELFPE 193 Query: 181 RLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 RLY+ + +R+ + E+ ++ LAY +LPLVATN + F Y+AHD ++ +A ST Sbjct: 194 RLYIEIARRNDAVEEASETALIDLAYARDLPLVATNPACFAERTFYDAHDAMLCIASSTH 253 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 V DRPR + + ++K + M +F DLPEAL NT+ +A+RC+ + PILP Sbjct: 254 VDSADRPRSSKEWWIKPAAVMEELFKDLPEALANTLVVAQRCAVMPPKRKPILP------ 307 Query: 300 CDDIQKEEENELR---NKAVAGLEVRLAQGAIAKGYHAQ--------------------- 335 + ++E E R + GL +RL + + HA+ Sbjct: 308 --SLAGDQEGEARMCAEDSRKGLVLRL-EPYYPESTHAELARVLCLGPDAEPVAADHPQL 364 Query: 336 ----------DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385 DYR+RL+FE+ +I RM F GYFLIVADFI+WAK++ IPVGPGRGSGAGS+ Sbjct: 365 VEAGVWEEVLDYRKRLEFEIAIINRMGFGGYFLIVADFIKWAKEHGIPVGPGRGSGAGSL 424 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 A+ALTITD+DP++ LLFERFLNP+R+SMPDFDIDFC+ RR EVIRYVQ KYG + VAQ Sbjct: 425 VAWALTITDLDPIKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQ 484 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLA 504 IITFG L+A+A LRD GR LQM Y Q DRLCK++PN P P L +A+ + + Sbjct: 485 IITFGKLKARAVLRDTGRILQMSYGQTDRLCKMVPNHPTDPWPLPRALNGVAELKREYDR 544 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 DP V RL++++ +LEGL R++STHAAG+VIGDRPL+QLVP+YRD RSD+PVTQF+MK +E Sbjct: 545 DPEVKRLIDLAMQLEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVE 604 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 AGL+KFDFLGLKTL++L+K++D + +R +++DLS +P+DD +TY LL + T+G+FQLE Sbjct: 605 DAGLVKFDFLGLKTLSVLRKAVDLMKKRSIEIDLSALPWDDEQTYKLLQSGDTVGVFQLE 664 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S GMR+ L ++P DIIALVSLYRPGP+DNI ++ RKNG E I H + +L E Sbjct: 665 SEGMRRTLAAVKPTNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEAIEYPHDKLAGILSE 724 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISK 743 T G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK++ EMD Q++RF+ G + +GI Sbjct: 725 TYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRQRFVDGCKEVSGIPA 784 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+KTHYP EF AA+M +M EK+ Sbjct: 785 AKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLS 844 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEA-SA 858 F D R+ + + P +N +F V + Y+LA ++ VG I+E A Sbjct: 845 VFVDDMRRNGVALAGPDINHSEAEFTVERTHDGYAVRYALAGLRNVGEKAMEQIVEEREA 904 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 + PF SL+D R+ + +NRR LE+L GALDC +R Q++ + + + A+ ++ Sbjct: 905 NGPFASLDDLFRRIPAGSMNRRQLEALAAGGALDCLEPNRAQIIANAELLMAVAEEASRS 964 Query: 919 RTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 RT+ +F + T + +++ K + E E GFYF+ HP++ Y+ + Sbjct: 965 RTSGQGGLFGGDDHATPATRLSDTKPWSRADQMAAEREN--FGFYFAAHPVEEYRAVASA 1022 Query: 978 MGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + Y S+ T G + +AA+V + Q++KT+KG FS+ + + A+ F Sbjct: 1023 NGARSY-GSLMTSSGEPGGRSGAVMAALVENVQKRKTKKGKDFVMADFSDSSGLFSASCF 1081 >gi|296283776|ref|ZP_06861774.1| DNA polymerase III, alpha subunit [Citromicrobium bathyomarinum JL354] Length = 1155 Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/1037 (44%), Positives = 649/1037 (62%), Gaps = 36/1037 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQP 69 FV L+V S++S+LEGA+ I K+A ++ PAIA+ D N L+ ++ F+Q G+QP Sbjct: 6 FVPLRVLSAFSMLEGAIEPKAIA-KLATERGFPAIAMCDRNGLYGSVPFAQACIENGVQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G L + D+ ++ + + L V G+ L LVS +L +Q Sbjct: 65 IVGALLGVARPDSDQIDH-----------LPLYVQDDAGWLNLCRLVSAAHLERPLEQVP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L+ L+ T+GLI LTG S G + R A + L + LF RLY+ L R Sbjct: 114 HVPLAALEGY-TDGLIALTGASEGAVTRLLAQGQGVHAARYLDRLEALFPQRLYIELAR- 171 Query: 190 RG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RG + E ++ LAY +LPLVATN + F Y+AHD ++ +A+S + ++DRPR Sbjct: 172 RGEPTEVAAEEALLDLAYARDLPLVATNPANFAEPHFYKAHDAMLCIANSRKLWEEDRPR 231 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 Y+K+ M +F+DLPEAL NT+ IA+RC+F APILP D++ E Sbjct: 232 SAKAAYVKSAPMMQELFADLPEALANTLTIAQRCAFAPPQRAPILPSL----AGDLEGEA 287 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L A GL+ RLA Q Y +RLD+E+ +I M F GYFLIVADFI+WA Sbjct: 288 KM-LAEDARRGLDARLAIYEDLSDEERQTYYERLDYEVGIIHNMGFPGYFLIVADFIKWA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +NIPVGPGRGSGAGS+ A++LTITD+DP+R LLFERFLNP+R+SMPDFDIDFC+ RR Sbjct: 347 KDHNIPVGPGRGSGAGSLVAWSLTITDLDPIRLGLLFERFLNPERVSMPDFDIDFCETRR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVIRYVQ KYG ++VAQIITFG ++A+A LRD GR L M Y QVDRLCK++PN P P Sbjct: 407 GEVIRYVQEKYGADKVAQIITFGKMKARAVLRDCGRILDMSYGQVDRLCKMVPNHPTDPW 466 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 SL +A+ + F+ D V L++++ +LEGL R++STHAAG+VIGDRPL++LVP+Y Sbjct: 467 SLPRALNGAAEFKGEYDNDNEVRTLVDLAMQLEGLPRNSSTHAAGVVIGDRPLAELVPLY 526 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD RSD+PVTQF+MK +E AGL+KFDFLGLKTL++LQK++D L +RG++ DL + +DD Sbjct: 527 RDPRSDMPVTQFDMKVVEGAGLVKFDFLGLKTLSVLQKAVDLLKRRGIECDLGTVSWDDK 586 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y L+ T+G+FQLES GMR+ L ++P EDIIALVSLYRPGP+DNI ++ RK Sbjct: 587 AVYDLMQRGDTVGVFQLESEGMRRTLTAVKPTKFEDIIALVSLYRPGPMDNIPLFGKRKA 646 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G E I H ++ +LKET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK + EMD Sbjct: 647 GVEPIEYPHAKLEGILKETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKNQAEMD 706 Query: 727 KQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 KQ++RFI G K + I A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K HYP Sbjct: 707 KQRQRFIDGCKKVSDIEANEASALFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPE 766 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAA 841 EF AA+M +MD EK+ F DAR+ I++ P +N +F V + Y LA Sbjct: 767 EFYAAAMCFDMDQSEKLAVFVDDARRNGIEVAAPDLNRSEAEFSVERTDDGYAVRYGLAG 826 Query: 842 IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 ++ VG I+ E A F+SL+DF SR+ +N R LE+L+ AGA D +R Q Sbjct: 827 LRNVGEKAMDAIVAEREAHGWFESLDDFFSRLPKGAMNSRQLEALIAAGAFDHLEPNRGQ 886 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L ++D + A + R++ E +F +E + + + ++ + + R E+ G Sbjct: 887 LTANVDLLLAVADAAIRERSSGQEGLFGNED-SANQGLRMKDAEDWSRAERMAKERETFG 945 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEE-----SVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 FYFS HP++ ++ + G + Y RG + +AAMV ++ +TR+G Sbjct: 946 FYFSAHPIEQFRDVASANGARSYSSLMTGGPAGEARGRAV-IAAMVEGAKRGQTRRGKDF 1004 Query: 1016 GWVTFSEPAKEYEANFF 1032 FS+ ++ A F Sbjct: 1005 IRADFSDSTGQFSAACF 1021 >gi|85708817|ref|ZP_01039883.1| DNA polymerase III alpha subunit [Erythrobacter sp. NAP1] gi|85690351|gb|EAQ30354.1| DNA polymerase III alpha subunit [Erythrobacter sp. NAP1] Length = 1165 Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/1042 (44%), Positives = 647/1042 (62%), Gaps = 37/1042 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQP 69 FV L+V SSYS+LEGA+ I K+A ++ PAI+I D N L+ A+ F+ + G+QP Sbjct: 6 FVPLRVLSSYSMLEGAIDPKAIA-KLAKERGFPAISICDRNGLYGAVMFANACKSEGVQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG L + + ++GK V + LL GY L LVS+ +L + Sbjct: 65 IIGTLLGV-----AREGSEGKL----VDYLPLLAQDEAGYDNLCHLVSKAHLDRPLELEP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + L E T+GLI LTG G + R A + KLF +RLY+ L RH Sbjct: 116 HVVMDDL-EGHTDGLIALTGAGEGALTRLLAEGQVDTATTFVERLDKLFVNRLYIELARH 174 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R E ++++AY LPLVATN + F ++AHD ++ +A+ST + +DRPR Sbjct: 175 GDPVCERAEDALIEMAYNRALPLVATNPANFAEPHMHKAHDAMLCIANSTYIENEDRPRT 234 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 ++K+ + M +F+DLPEA NT+ IA+RC++ PILP D++ E + Sbjct: 235 NHAAFVKSSNMMEELFADLPEATANTLVIAQRCAYAPPYRDPILPSL----AGDLEGEAK 290 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L ++ AGLE RL+ + Y RLD+E+++I M F GYFLIVADFIQWAK Sbjct: 291 M-LAEQSKAGLEERLSSYEDLSEEDRKVYFDRLDYEIDIIVGMGFPGYFLIVADFIQWAK 349 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 IPVGPGRGSGAGS+ A+ALTITD+DP++ LLFERFLNP+R+SMPDFDIDFC+ RR Sbjct: 350 DQGIPVGPGRGSGAGSIVAWALTITDLDPIQLGLLFERFLNPERVSMPDFDIDFCETRRG 409 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVIRYVQ KYGH+ VAQIITFG ++A+A LRD GR LQM Y QVDRLCK++PN P P + Sbjct: 410 EVIRYVQKKYGHDHVAQIITFGKMKARAVLRDCGRILQMSYGQVDRLCKMVPNHPTDPWT 469 Query: 489 L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L +A+ + F++ D V RL++++ +LEGL R++STHAAG+VIGDRPL+QLVP+YR Sbjct: 470 LPRALNGAADFKKEYDNDNEVKRLVDLALQLEGLPRNSSTHAAGVVIGDRPLAQLVPLYR 529 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D RSD+PVTQ++MK +E +GL+KFDFLGLKTL++L+K++D LA RG+++DL +P DD Sbjct: 530 DPRSDMPVTQYDMKNVESSGLVKFDFLGLKTLSVLRKAVDLLAMRGIEIDLGALPLDDTA 589 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 Y L+ T+G+FQLES GMR+ L+ ++P DIIALVSLYRPGP+DNI ++ RK G Sbjct: 590 VYDLMQMGNTVGVFQLESEGMRRTLKAVKPSNFGDIIALVSLYRPGPMDNIPLFGQRKAG 649 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + I HP ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK++ EMD Sbjct: 650 EVAIEYPHPKLEGILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMDI 709 Query: 728 QKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ RF+ G +GI A +F+L+ KFA YGFNKSHAAAYA+++YQTAWMK HYP E Sbjct: 710 QRGRFVEGCKDVSGIEAKQANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWMKAHYPEE 769 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQF--------NIQIMPPSVNTPCVDFKVGDN----R 834 F AASM ++ EK+ F DAR++ ++++PP VN F V Sbjct: 770 FYAASMCFDLHQSEKLNIFVDDARRYPAERANGSGVEVLPPDVNHSEARFTVEQTDDGYA 829 Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + Y+LA I+ VG I+ E + PF+SL+D R+ +NRR LE L+ AGALD Sbjct: 830 VRYALAGIRNVGEKAMEAIVAERRSKGPFESLKDLFERMPHGAMNRRQLEGLICAGALDG 889 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R +L + D + A + R++ +F + D + L+ + + Sbjct: 890 LYPNRGELFANADLLLATADAAARERSSGQGGLFGGDNAPQED-LRLQPAESWSRPDQMA 948 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYE---ESVATIRGNNIRLAAMVVSKQQKKTR 1010 E+ GFYFS HP+ Y+ + G + Y+ + A +AAMV S + +T+ Sbjct: 949 KERENFGFYFSAHPVQQYREVASAQGARTYQSLMDGGAPAGRQTAVIAAMVESAGKGRTK 1008 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 +G+ FS+ + ++ A F Sbjct: 1009 RGAEFVRGQFSDSSGQFSAACF 1030 >gi|149184684|ref|ZP_01863002.1| DNA polymerase III alpha subunit [Erythrobacter sp. SD-21] gi|148832004|gb|EDL50437.1| DNA polymerase III alpha subunit [Erythrobacter sp. SD-21] Length = 1157 Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/1039 (44%), Positives = 637/1039 (61%), Gaps = 39/1039 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQP 69 FV L+V S+YS+LEGA+ + K+A ++ PAIA+ D N L+ A+ F+ A GIQP Sbjct: 6 FVPLRVLSAYSMLEGAID-PKAMAKLAKERGFPAIAMADRNGLYGAVMFANACKAEGIQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + + +G+T V + L GY L LVS+ +L + Sbjct: 65 ITGTLLGVARDE------EGRT----VDYLPLYAQDEAGYDNLCHLVSKAHLERPLEFEP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I + L E T+GLI LTG S G + R + A L + LF RLYV L R Sbjct: 115 HIRMEDL-EGRTDGLIALTGASEGGVTRLLAEGQTSHATAMLDKLEALFPGRLYVELAR- 172 Query: 190 RG--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RG + E+ ++ LAY +LPLVATN + F Y+AHD ++ +A+ST + ++R + Sbjct: 173 RGNPVEEAAEAALIDLAYERDLPLVATNPANFAEPHMYKAHDAMLCIANSTHIDNEERAK 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y+K M F DLPEA NT+ +A+RC++ PILP D++ E Sbjct: 233 SNPEAYVKTAHMMEEAFDDLPEATTNTLVVAQRCAYAPPYRDPILPSL----AGDLEGEA 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L A GLE RL + Y RLD+E+ +I +M F GYFLIVADFI+WA Sbjct: 289 RM-LEADARKGLEKRLEPYGEMTEEARKVYFDRLDYEVGIINQMGFPGYFLIVADFIKWA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K ++IPVGPGRGSGAGS+ A+ALTITD+DP++ LLFERFLNP+R+SMPDFDIDFC+ RR Sbjct: 348 KDHDIPVGPGRGSGAGSLVAWALTITDLDPIQLGLLFERFLNPERVSMPDFDIDFCETRR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVIRYVQ KYGH+ VAQIITFG L+A+A LRD GR LQM Y VDR+CK++PN P P Sbjct: 408 GEVIRYVQAKYGHDHVAQIITFGKLKARAVLRDTGRILQMSYGHVDRICKMVPNHPTDPW 467 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L +A+ + F+ D V RL++++ KLEG R++STHAAG+VIGDRPL+QLVP+Y Sbjct: 468 TLPRALNGAADFKAEYDNDNEVKRLIDLAMKLEGFPRNSSTHAAGVVIGDRPLAQLVPLY 527 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD RSD+PVTQ++MK +E +GL+KFDFLGLKTL++L+K+ D L +R + +DLS + DD Sbjct: 528 RDPRSDMPVTQYDMKNVESSGLVKFDFLGLKTLSVLKKATDLLKKRDITIDLSQLELDDP 587 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y L+ T+G+FQLES GMR+ L ++P DIIALVSLYRPGP+DNI ++ RK Sbjct: 588 AVYELMKAGNTVGVFQLESEGMRRTLTAVKPTNFGDIIALVSLYRPGPMDNIPLFGKRKA 647 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+ I H ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK++ EMD Sbjct: 648 GEVPIEYPHEKLEGILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMD 707 Query: 727 KQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 Q+ERF++G +GI K A +F+L+ KFA YGFNKSHAAAYA+++YQTAWMK HYP Sbjct: 708 IQRERFVAGCKDVSGIEKAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWMKAHYPE 767 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAA 841 EF AASM +M EK+ F DAR+ I + PP +N +F V + Y+LA Sbjct: 768 EFFAASMCFDMHQSEKLTIFVDDARRQGIAVEPPCLNKSEAEFTVEQTDTGYAVRYALAG 827 Query: 842 IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 I+ VG +I+ E FDSL+D R+ +N R LE+L AGALD +R + Sbjct: 828 IRNVGEKAMENIVAEREVSGQFDSLQDLFERIPKGSMNSRQLEALACAGALDSLEPNRSK 887 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQRV 958 + ++ D + A ++ RT+ ++F G + TL VE+ + R E+ Sbjct: 888 VFENADMLLAVADAADRERTSGQASMFG---GDDAPGETLRLREVEDWPRAERMAREREN 944 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEE-----SVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 GFYFS HP+ +K I G + Y + A R N + +AAMV + TR+G Sbjct: 945 FGFYFSNHPVAAWKDIASANGARTYASLMSGGAPAGGRSNAV-MAAMVEKVNKGTTRRGK 1003 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 FS+ ++ A F Sbjct: 1004 PFIRADFSDATGQFSAACF 1022 >gi|326387647|ref|ZP_08209253.1| DNA polymerase III, alpha subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326207693|gb|EGD58504.1| DNA polymerase III, alpha subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 1196 Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/1068 (42%), Positives = 639/1068 (59%), Gaps = 57/1068 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L+V SSY++L+GA+ I A PAIAITD N L+ ++ F++ G+QP+ Sbjct: 6 FVSLRVFSSYTMLDGAVDPKVIAKTAAERGFPAIAITDRNGLYGSVAFAKACKDVGVQPV 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L + + T PT+ + L + GY + LVSR +L + + Sbjct: 66 IGTMLAVARPERGGATTTFGPQAPTIDWLALYAQDSTGYDNICHLVSRAHLDRPLEFAPH 125 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L T+GL+ L+ G G I R AE LF DR Y+ L R R Sbjct: 126 VRVEDLAG-HTDGLLCLSAGGEGAITRLLAEGQQDAAEAYADEIAGLFPDRFYIELAR-R 183 Query: 191 G--YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G + E ++ LAY + PLVATN + F Y AHD ++ +A ST V DRPR Sbjct: 184 GDPVEERAEDALIDLAYARDWPLVATNPACFAERAFYPAHDAMLCIASSTHVDSADRPRS 243 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + + ++K M +F D+PEAL NT+ +A+RC+ + PILP + ++E Sbjct: 244 SVEWWIKPAPVMEELFKDIPEALANTLVVAQRCAAMPPKRKPILP--------SLAGDKE 295 Query: 309 NELRNKAV---AGLEVRL----------------AQGAIAKGYHAQ-------------- 335 E R A GL RL G + A+ Sbjct: 296 GEARMCAADSRTGLVARLMPYYPADTHEELSALLTMGPEGEPVEAEFPALSAAGIFGEVC 355 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 +YR RL+FE+ +I RM F GYFLIVADFI+WAK+++IPVGPGRGSGAGS+ A+ALTITD+ Sbjct: 356 NYRHRLEFEIGIINRMGFGGYFLIVADFIKWAKEHSIPVGPGRGSGAGSLVAWALTITDL 415 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DP+R LLFERFLNP+R+SMPDFDIDFC+ RR EVIRYVQ KYG + VAQIITFG L+A+ Sbjct: 416 DPIRLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQIITFGKLKAR 475 Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEI 514 A LRD GR LQM Y QVDRLCK++PN P P L +A+ + + DP V RL+++ Sbjct: 476 AVLRDTGRILQMSYGQVDRLCKMVPNHPTDPWPLPRALNGVAELKREYDRDPEVRRLIDL 535 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + +LEGL R++STHAAG+VIGDRPL+QLVP+YRD RSD+PVTQF+MK +E AGL+KFDFL Sbjct: 536 AMQLEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFL 595 Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 GLKTL++L+K++D L +RG+++DLS + +DD + Y LL + T+G+FQLES GMR+ L Sbjct: 596 GLKTLSVLRKAVDLLGKRGIQIDLSTLGWDDAQVYRLLQSGDTVGVFQLESEGMRRTLAA 655 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694 ++P DIIALVSLYRPGP+DNI ++ RKNG E+I H + +L ET G+ +YQEQ Sbjct: 656 VKPTNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEEIEYPHDKLAGILSETYGIFVYQEQ 715 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELL 753 VMQ AQ+L+GYSL +AD+LRRAMGKKI+ EMD+Q+ RF++G + + I A +F+L+ Sbjct: 716 VMQAAQILAGYSLGDADLLRRAMGKKIQAEMDQQRARFVAGCKEVSQIDAGKANELFDLI 775 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA+++YQTAW+KTHYP EF AA+M +M EK+ F D R+ Sbjct: 776 DKFAGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLNIFVDDMRRNG 835 Query: 814 IQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDF 868 + P +N +F V + Y+LA ++ VG I+ E A+ PF +L++ Sbjct: 836 FALAGPDINRSVAEFTVERTEESYAVRYALAGLRNVGEKAMEAIVAEREANGPFQTLDEL 895 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 R+ + +NRR LE+L GALDC +R +L+ + + + A + RT+ +F Sbjct: 896 FRRLPAGAMNRRQLEALAAGGALDCLEPNRAKLIANAELLMAVADEASRARTSGQGGLFG 955 Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 + L + + + + E+ GFYF+ HP++ Y+ I G + Y + Sbjct: 956 GDD-HVEQATRLVETKPWSRAEQMAAERENFGFYFAAHPVEEYRAISSANGARTYASLMM 1014 Query: 989 TIRGNNIR----LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R +AA+V Q++KT++G FS+ + + A F Sbjct: 1015 GGGTATGRTGAVMAALVEGVQKRKTKRGKDFVMADFSDKSGLFSACCF 1062 >gi|85374223|ref|YP_458285.1| DNA polymerase III alpha subunit [Erythrobacter litoralis HTCC2594] gi|84787306|gb|ABC63488.1| DNA polymerase III alpha subunit [Erythrobacter litoralis HTCC2594] Length = 1163 Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/1046 (44%), Positives = 644/1046 (61%), Gaps = 49/1046 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKACAAGIQP 69 FV L+V SSYS+LEGA+ L K+A ++ PAIAI D N L+ A+ F+ GIQP Sbjct: 6 FVPLRVLSSYSMLEGAID-PKALAKLAKERGFPAIAICDRNGLYGAVAFAGACRDEGIQP 64 Query: 70 IIGCQLDI-----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123 IIG + + D D+L + Q + + ++ LVS A +R +ELV + L D Sbjct: 65 IIGALVGVARPGSDAIDHLPLYAQDEAGYL---NLCHLVSKAH-LERPVELVPHVSLDDF 120 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G+ TEGLI LTG S G + + AE + LF +RLY Sbjct: 121 DGR--------------TEGLIALTGASEGGVTQLLAEGQKDHAEAYCDRLQALFPERLY 166 Query: 184 VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 V L R ++ E +V LAY +LPLVATN + F ++AHD ++ +A S + + Sbjct: 167 VELSRRGNAVEQAAEEALVDLAYARDLPLVATNPANFAEPGFHKAHDAMLCIAGSYKIHE 226 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +DRPR ++K+ M IF DLPEA NT+ IA+RC++ PILP D Sbjct: 227 EDRPRTDQQAWVKSDRMMGEIFEDLPEATANTLVIAQRCAYAPPYRDPILPSL----AGD 282 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ EE LR + GLE RL ++Y +RLD+E+ +I RM F GYFLIVAD Sbjct: 283 LEGEERM-LRELSTKGLEKRLEPYEDLSDEDREEYFERLDYEIGIINRMGFPGYFLIVAD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK + IPVGPGRGSGAGS+ A+ALTITD+DP+R LLFERFLNP+R+SMPDFDIDF Sbjct: 342 FIQWAKDHGIPVGPGRGSGAGSLVAWALTITDLDPIRLGLLFERFLNPERVSMPDFDIDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C+ RR EVIRYVQ +YGH++VAQIITFG L+A+A LRDVGR + Y++ DRLCK++PN Sbjct: 402 CETRRGEVIRYVQERYGHDKVAQIITFGKLKARAVLRDVGRIVDYGYNRTDRLCKMVPNH 461 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P P +L +A+ + F+ D L++++ +LEGL R++STHAAG+VIGDRPLSQ Sbjct: 462 PTDPWTLPRALNGSAEFKAEYSNDNDTKALIDLAMQLEGLPRNSSTHAAGVVIGDRPLSQ 521 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVP+YRD RSD+PVTQF+MK +E +GL+KFDFLGLKTL++LQK++D L +RG+ VDL + Sbjct: 522 LVPLYRDPRSDMPVTQFDMKHVESSGLVKFDFLGLKTLSVLQKAVDLLEKRGIDVDLGAL 581 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 +DD Y L+ + T+G+FQLES GMR+ L ++P EDIIALVSLYRPGP+DNI ++ Sbjct: 582 AWDDPAVYELMKSGNTVGVFQLESEGMRRTLTAVKPTKFEDIIALVSLYRPGPMDNIPLF 641 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK G E I HP ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK Sbjct: 642 GKRKAGLEPIEYPHPKLEEILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKN 701 Query: 722 KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + EMDKQ+ F+ G +K + I A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K Sbjct: 702 QAEMDKQRAIFVEGCAKVSDIDADKANELFDLINKFAGYGFNKSHAAAYALLAYQTAWLK 761 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQF-----NIQIMPPSVNTPCVDFKVGDN-- 833 HYP EF AASM +M EK+ F DAR++ I + PP +N +F V Sbjct: 762 AHYPEEFYAASMCFDMHQSEKLAVFVDDARRYPLVEGGIVVAPPDINASEAEFTVERTDD 821 Query: 834 --RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + Y+LA I+ VG I+ E A+ F+SL D R+ +N R LE+L+ AGA Sbjct: 822 GYAVRYALAGIRNVGEKAMDAIVREREANGVFESLGDLFDRLPQGAMNSRQLEALIAAGA 881 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 LD +R +L ++D + A + RT+ E +F + D + L+ + Sbjct: 882 LDGLEPNRGKLAANVDLLLATADAAIRERTSGQEALFGGDLAA-EDTLRLKDAEDWDRPT 940 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---ATIRG-NNIRLAAMVVSKQQ 1006 R E+ GFYFS HP++ ++ + G + Y + A G + +AAMV Sbjct: 941 RMAKERENFGFYFSEHPVEHFRDVASANGARPYASLMTGGAPAGGRSKAMMAAMVEKVNI 1000 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 TR+G++ FS+ + ++ A F Sbjct: 1001 GTTRRGAQFVRADFSDSSGQFSAACF 1026 >gi|254456520|ref|ZP_05069949.1| DNA polymerase III, alpha subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083522|gb|EDZ60948.1| DNA polymerase III, alpha subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 1138 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1046 (40%), Positives = 663/1046 (63%), Gaps = 56/1046 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL++H+ YS+ EGA+ ++++ D +++ ++A+ DT+NL ALEF++K G QP Sbjct: 8 NFNHLKIHTQYSICEGAVKIDDLQDFAKSNKIKSLALCDTSNLCGALEFAEKISKVGTQP 67 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G Q++ D TV + L +GY+R+I+L S +L + Sbjct: 68 IVGTQINFKFGD-------------TVGLLPLFSLNEKGYKRIIKLSSLSFLENDKLSDP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL---FGDRLYVNL 186 + + L E EG+ + +G + G FN + E L +KKL F DR Y+ + Sbjct: 115 HVDFNNLLE-NNEGVAIFSGTTFGLFGE--LFNKGKFTEIHDL-YKKLNSTFDDRFYIEI 170 Query: 187 QRHR-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 QRH G++++ ++ ++L ++P++ATN +++++ +EAHD L+ + + T ++ Sbjct: 171 QRHNDQNELGFEKFNLNKSLEL----KIPIIATNEVFYINQDMHEAHDALICIGNKTYIN 226 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-- 299 +K+R ++ HY K+ SEM +F+DLPEALEN RC+F PILP +E Sbjct: 227 EKNRKHLSNQHYFKSNSEMSELFADLPEALENNYNFPLRCNFRPLFSNPILPNISSEEGG 286 Query: 300 -CDDIQKEEENELRNKAVAGLEVR------LAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 DD+ L+ +++GL+++ + + + + DY+ RL+ EL++I MK Sbjct: 287 NADDL-------LKKDSLSGLKIKFNKIFGIKENELDNDKNYLDYKDRLNHELSIIIEMK 339 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 +S YFLIV+D+I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR Sbjct: 340 YSSYFLIVSDYIKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDR 399 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC+++RD V Y+ KY + VA IITFG L+A+ +RDVGR L +PY V Sbjct: 400 ISMPDFDIDFCEEKRDLVFEYLTKKY-QDSVAHIITFGKLKARMVVRDVGRVLGLPYGFV 458 Query: 473 DRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 D + K+IP DP+ P +L Q I+ + R ++ D V +L ++S KLEGL R+ +THAAG Sbjct: 459 DSISKMIPFDPSRPQTLTQCISGEPRLQKLINEDQRVKKLTDLSLKLEGLNRNVATHAAG 518 Query: 532 IVIGDRPLSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 +VI D+ L+++VP+Y+D S+L P TQF+M E AGL+KFDFLGLKTLT++ + + Sbjct: 519 VVIADKKLTEVVPLYKDASSELLLPSTQFDMYSAENAGLVKFDFLGLKTLTVINNTQKLV 578 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 + D+ I ++D + + LL++ T+G+FQ+ESSGMR+AL M+P+ IEDIIALV+L Sbjct: 579 KKIDKNFDIEKISYEDQKVFELLSSGNTVGLFQVESSGMREALVQMKPNHIEDIIALVAL 638 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGP+ NI YN+ K+G++ +HPL++ +LK T GVIIYQEQVMQIAQ LSG++ + Sbjct: 639 YRPGPMSNISTYNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGQ 698 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK + E++KQK+ FI+GA +NGI+K +A IF + FA+YGFNKSHAAAY Sbjct: 699 ADLLRRAMGKKKRAELEKQKQGFIAGAVQNGIAKDVAAGIFLKIEPFAEYGFNKSHAAAY 758 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+ISYQTA++KT+YP EF+AASMT+++ N K+ +F ++ ++ NI+++ P++N DF+ Sbjct: 759 AIISYQTAFLKTYYPKEFIAASMTMDISNQNKLSEFYEELKRLNIKVVRPNINECYADFR 818 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 ++ YY+L IK VG +++ E S + FDS+ DF RV+ K +N+ LE LV A Sbjct: 819 TEGDKFYYALGGIKAVGYEAISNVIKERSENGKFDSINDFLKRVNPKDMNKLQLEGLVKA 878 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--LEKFSVE 946 GA D +R L S+ N + + N++ ++F+ ++ +D IT +E ++ E Sbjct: 879 GAFDNLNNNRQSLFNSIPNFILKTKNIFDNKSANQIDLFSEDESLQND-ITHDIEDWNFE 937 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 R E +GF+ S HPL+ + I IK Y + + +AA ++ Q+ Sbjct: 938 E---RLSKEFEAVGFFISNHPLNQFTEIFDDYKIKDYSNFNSNDEIKDANIAATLLKLQE 994 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 +KT KG+ + ++ +E F Sbjct: 995 RKTAKGNAYAVLKLTDLNSVFELFIF 1020 >gi|71083603|ref|YP_266322.1| DNA polymerase III subunit alpha [Candidatus Pelagibacter ubique HTCC1062] gi|71062716|gb|AAZ21719.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique HTCC1062] Length = 1138 Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1044 (41%), Positives = 648/1044 (62%), Gaps = 52/1044 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL++H+ YS+ EGA+ ++N+ D + P + I+DT+NL ALEF++ G QP Sbjct: 8 NFNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKVGTQP 67 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG Q+ +D T + L+ GY+R+IEL SR YL + Sbjct: 68 IIGTQIYFKFED-------------TTGLLPLIALNENGYKRIIELSSRSYLENDALSDP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + L I TEG+ +L+G G + F K + F D Y+ +QRH Sbjct: 115 HLDVKELL-IDTEGVSLLSGTIQGLFGKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRH 173 Query: 190 R-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 ++++ Q +++ ++P++ATN +L+ + +EAHD L + T V++K+ Sbjct: 174 GDQNEIAFEKFNLEQSLKI----QIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKN 229 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 R + + HY K+ EM +FSDLPEALEN + +C+F Q P+LP ++ D Sbjct: 230 RIKYSNQHYFKSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKGGSAD 289 Query: 302 DIQKEEENELRNKAVAGLE------VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 +I L+ ++ GL+ ++ + + Y+ RLD EL +I MK+ Sbjct: 290 EI-------LKKDSLDGLKEKFQKVFKIEENNLKTDDKFLKYKDRLDHELKIIIEMKYPS 342 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV+D+I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SM Sbjct: 343 YFLIVSDYIKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSM 402 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFC+++RD V +Y+ KY + VA IITFG L+A+ +RDVGR L +PY VD + Sbjct: 403 PDFDIDFCEEKRDLVFKYLTTKY-KDSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSI 461 Query: 476 CKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 K+IP DP+ P SL + I + R ++ DP V +L ++S KLEGL R+ +THAAG+VI Sbjct: 462 SKMIPFDPSRPQSLTECINSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVI 521 Query: 535 GDRPLSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 DR L+++VP+Y+D +DL P TQF+M E AGLIKFDFLGLKTLT++ ++ + ++ Sbjct: 522 ADRKLTEVVPLYKDAAADLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKK 581 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 + I FDD + + LL++ T+G+FQ+ES+GMR+AL M+P+ IEDIIALV+LYRP Sbjct: 582 VKDFKIEDIDFDDQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRP 641 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+ NI +YN+ K+G++ +HPL++ +LK T GVIIYQEQVMQIAQ LSG++ EAD+ Sbjct: 642 GPMSNIPIYNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADI 701 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK + E++KQK+ FI+GA KNGISK +A +IF + FA+YGFNKSHAAAYA+I Sbjct: 702 LRRAMGKKKRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAII 761 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQTA++KT+YP EF AASMT+++ N K+ +F ++ ++ NI+++ P +N DF+ D Sbjct: 762 SYQTAFLKTYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQFDD 821 Query: 833 NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 N YY+L IK VG +++ E + + F S+ DF +RV+ K +N+ LE LV AGA Sbjct: 822 NNFYYALGGIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAF 881 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSV 950 D +R L S+ N + + +N+ ++F + ++ + +E + E+ Sbjct: 882 DNIDNNRQALFNSIPNFILKTKNIYENKAANQIDLFGSDDEQDNEIVLNIEDWKFED--- 938 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKK 1008 R E +GF+ S HPL+ +K I I Y + TI+ NI AA ++ ++K Sbjct: 939 RLSREFEAIGFFISDHPLNQFKEIFDDYKIVDYAQFNLNDTIKEANI--AATLLKITERK 996 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T KG+ G + F++ +E F Sbjct: 997 TAKGNSYGVIKFTDLTSVFELFIF 1020 >gi|91761976|ref|ZP_01263941.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91717778|gb|EAS84428.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 1138 Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1039 (41%), Positives = 650/1039 (62%), Gaps = 42/1039 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL++H+ YS+ EGA+ ++N+ D + P + I+DT+NL ALEF++ G QP Sbjct: 8 NFNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKVGTQP 67 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG Q+ +D T + L+ GY+R+IEL SR YL + Sbjct: 68 IIGTQIYFRFED-------------TTGLLPLIALNENGYKRIIELSSRSYLENDALSDP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + L I TEG+ +L+G G + F K + F D Y+ +QRH Sbjct: 115 HLDVKDLL-IDTEGVSLLSGTIQGLFGKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRH 173 Query: 190 R-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 ++++ Q +++ ++P++ATN +L+ + +EAHD L + T V++K+ Sbjct: 174 GDQNEIAFEKFNLEQSLKI----QIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKN 229 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 R + + HY K+ EM +FSDLPEALEN + +C+F Q P+LP ++ D Sbjct: 230 RIKYSNQHYFKSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKGGSAD 289 Query: 302 DIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 +I K++ + L+ K + +V + + Y+ RLD EL +I MK+ YFLIV Sbjct: 290 EILKKDSLDGLKEKFLKVFKVE--ENNLKTDDKFLKYKDRLDHELKIIIEMKYPSYFLIV 347 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +D+I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SMPDFDI Sbjct: 348 SDYIKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSMPDFDI 407 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC+++RD V +Y+ KY + VA IITFG L+A+ +RDVGR L +PY VD + K+IP Sbjct: 408 DFCEEKRDLVFKYLTTKY-KDSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSISKMIP 466 Query: 481 NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 DP+ P SL + I + R ++ DP V +L ++S KLEGL R+ +THAAG+VI DR L Sbjct: 467 FDPSRPQSLTECINSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVIADRKL 526 Query: 540 SQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 +++VP+Y+D +DL P TQF+M E AGLIKFDFLGLKTLT++ ++ + ++ Sbjct: 527 TEVVPLYKDAAADLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKKVKDFK 586 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I FDD + + LL++ T+G+FQ+ES+GMR+AL M+P+ IEDIIALV+LYRPGP+ N Sbjct: 587 IEDIDFDDQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRPGPMSN 646 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I +YN+ K+G++ +HPL++ +LK T GVIIYQEQVMQIAQ LSG++ EAD+LRRAM Sbjct: 647 IPIYNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADILRRAM 706 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK + E++KQK+ FI+GA KNGISK +A +IF + FA+YGFNKSHAAAYA+ISYQTA Sbjct: 707 GKKKRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAIISYQTA 766 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++KT+YP EF AASMT+++ N K+ +F ++ ++ NI+++ P +N DF+ DN YY Sbjct: 767 FLKTYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQFDDNNFYY 826 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 +L IK VG +++ E + + F S+ DF +RV+ K +N+ LE LV AGA D Sbjct: 827 ALGGIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAFDNIDN 886 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENE 955 +R L S+ N + + +N+ ++F ++ ++ + +E + E+ R E Sbjct: 887 NRQALFNSIPNFILKTKNIYENKAANQIDLFGSDEEQDNEIVLNIEDWKFED---RLSRE 943 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGS 1013 +GF+ S HPL+ +K I I Y + TI+ NI AA ++ ++KT KG+ Sbjct: 944 FEAIGFFISDHPLNQFKEIFDDYKIVDYAQFNLDDTIKEANI--AATLLKITERKTAKGN 1001 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 G + F++ +E F Sbjct: 1002 SYGVIKFTDLTSVFELFIF 1020 >gi|225631083|ref|ZP_03787815.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591221|gb|EEH12371.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 797 Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/785 (51%), Positives = 551/785 (70%), Gaps = 15/785 (1%) Query: 197 ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256 E ++ AY +PLVATN+ F + DYEA+D+L ++ + + +R ++T +HY K+ Sbjct: 2 EEALIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKLTTEHYFKS 61 Query: 257 RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316 +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K E ELR +AV Sbjct: 62 VAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTENEELREQAV 117 Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 AGLE R+A + Y RL++EL+VI M ++GYFLIV+DFI+W+K N IPVGP Sbjct: 118 AGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSKANGIPVGP 174 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD VI YVQ Sbjct: 175 GRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRDLVIDYVQK 234 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADD 495 KYG+ VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+L QAI D Sbjct: 235 KYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVTLSQAIEFD 292 Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 ++ R +D + +LL+IS KLEG+YRH STHAAGIVI D+ L VP+Y D S LP+ Sbjct: 293 QNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYYDPNSALPI 352 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615 TQ++MK++EKAGLIKFDFLGL TLTL+ + + G K+D+S +P +D +TY +L++ Sbjct: 353 TQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLNDQKTYEILSSG 412 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675 ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y RK+G EK IH Sbjct: 413 DSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHGLEKPDYIH 472 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 PL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDKQ+E FI G Sbjct: 473 PLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDKQRELFIQG 532 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A+KNG+ A IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF A M L Sbjct: 533 ATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEFFTALMNLN 592 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855 +D+ +K+ F A+ + ++ P +N +F + D RI Y +AA++ VG + A I+ Sbjct: 593 IDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGFSIAEGIVN 652 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915 + D E ++ +N+R LESL+ +GA D +R QL +S+D + +A Sbjct: 653 VHSSACKDIWE--FTQNSGHTINKRALESLIKSGAFDSVHKNRKQLYESMDTLIYFANKN 710 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 +++R + +F +E F E + E+E LGFY + HPL+ ++ +L Sbjct: 711 KQDRESSQAALFGSLDVLKPKLENVEDFDEEE---KLEHELFSLGFYLTNHPLEKFRTLL 767 Query: 976 RKMGI 980 K+ I Sbjct: 768 EKLNI 772 >gi|156935300|ref|YP_001439216.1| DNA polymerase III subunit alpha [Cronobacter sakazakii ATCC BAA-894] gi|156533554|gb|ABU78380.1| hypothetical protein ESA_03157 [Cronobacter sakazakii ATCC BAA-894] Length = 1160 Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/1053 (42%), Positives = 631/1053 (59%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA AITD NL ++F A GI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGVGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D +MQ L + I +L + GYQ L L+SR Y G Sbjct: 64 PIIGA--DFNMQCELLGDD--------FSHITVLAANNTGYQNLTLLISRAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+G EGLI+L+GG G + + ++ +AE+ L +++ F DR Y+ L R Sbjct: 114 PWIDQQWLAELG-EGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYLELVR 172 Query: 189 HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D R V LA +P+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEERYLHAAVALAEEKGIPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL+ EM +FSDLPEALEN+VEIARRC+ +++ LP+F + Sbjct: 233 HYSPQQYLRTEEEMCELFSDLPEALENSVEIARRCNVTVRLGEYFLPKFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL AQ +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVMKSKEGLEERLEFLFPDPEIRAQKRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + +E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D+ Sbjct: 527 PLYCDEMGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQGLEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSIFEDGAKNNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + D F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++++ + T++G+RIG T + + E F Sbjct: 999 LIIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|317046997|ref|YP_004114645.1| DNA polymerase III subunit alpha [Pantoea sp. At-9b] gi|316948614|gb|ADU68089.1| DNA polymerase III, alpha subunit [Pantoea sp. At-9b] Length = 1160 Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/1057 (42%), Positives = 634/1057 (59%), Gaps = 62/1057 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G ++ K AA PAIAITD NL ++F A AG++ Sbjct: 4 PRFIHLRVHSDYSMVDGLAKTGPLVKKAAALGMPAIAITDFTNLCGLVKFYGTAHGAGVK 63 Query: 69 PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIG ++ M D L + +L + GYQ L L+SR Y G Sbjct: 64 PIIGADFNVVSELMGDELT-------------QLTVLAANNTGYQNLTLLISRAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E EGLI+L+GG G + R+ ++ + + L +++ F DR Y+ Sbjct: 111 IAGPVIDRDWLAEY-QEGLILLSGGRRGDVGRSLLRGNNALVAQCLAFYQQHFPDRYYLE 169 Query: 186 LQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D Y S V+LA +P+VATN FL+EED++AH++ +A+ + Sbjct: 170 LTRTGRPDEEGYLHS-AVELAIAEGVPVVATNEVCFLNEEDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ +EM +FSD+PEALEN+VEIA+RC+ +++ LP+F + Sbjct: 229 KRPRNYSPQQYMRSEAEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-- 286 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + Q+Y +RL+ ELNVI +M F GYFLI Sbjct: 287 ---TTEDFLVVKSREGLEERLEFLFPDPAVRAEKRQEYDERLEIELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 523 TDFAPLYCDENGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLE 582 Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIEWQHESLQPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA K G++ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFQEGAEKMGVNGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYP 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + D F L D C+R D+KK+NRRV+E L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAILEARNRDGYFKELFDLCARTDTKKINRRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + +GA D G R L+ SL++ K A K ++F G ++ E V Sbjct: 883 IMSGAFDRLGPHRAALMSSLNDALKAADQHAKAEAIGQADMF----GVLAE----EPEQV 934 Query: 946 ENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNI 995 E S ++ + E+ LG Y +GHP++ Y K I R +G ++ T RG Sbjct: 935 EKSYASVTPWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKVT 994 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +V++ + T++G+RIG T + + E F Sbjct: 995 VAAGLVIAARTMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|283783968|ref|YP_003363833.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168] gi|282947422|emb|CBG86967.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168] Length = 1160 Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1053 (42%), Positives = 635/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F +AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D +Q L M ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFHVQSEL-MGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R +S + E+ + +++ F DR ++ L R Sbjct: 114 PVIDRDWLIEL-NEGLILLSGGRMGDVGRGLLRGNSALVEECVAFYEQHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSADFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y++ EM +FSD+PEALEN+VEIARRC+ +++ LP+F + Sbjct: 233 NYSPQQYMRTEEEMCELFSDIPEALENSVEIARRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEQGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|260596604|ref|YP_003209175.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032] gi|260215781|emb|CBA28207.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032] Length = 1160 Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/1053 (42%), Positives = 630/1053 (59%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA AITD NL ++F A G++ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGVGMK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D +MQ +L + I +L + GYQ L L+SR Y G Sbjct: 64 PIIGA--DFNMQCDLLGED--------FSHITVLAANNTGYQNLTLLISRAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+G EGLI+L+GG G + + ++ +AE+ L +++ F DR Y+ L R Sbjct: 114 PWIDQQWLAELG-EGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYLELVR 172 Query: 189 HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D R V LA +P+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEERYLHAAVALAEEKGVPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL+ EM +FSDLPEALEN+VEIARRC+ +++ LP+F + Sbjct: 233 HYSPQQYLRTEEEMCELFSDLPEALENSVEIARRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVMKSKEGLEERLEFLFPDPEERVQKRPPYDERLEIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + +E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +LD + R K +D+ Sbjct: 527 PLYCDEMGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALDMINARRAKQGLEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSIFEDGAKNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + D F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++++ + T++G+RIG T + + E F Sbjct: 999 LIIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|291616361|ref|YP_003519103.1| DnaE [Pantoea ananatis LMG 20103] gi|291151391|gb|ADD75975.1| DnaE [Pantoea ananatis LMG 20103] Length = 1160 Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1056 (41%), Positives = 633/1056 (59%), Gaps = 60/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G ++ K AA PAIAITD NL ++F A AG++ Sbjct: 4 PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGSAHGAGVK 63 Query: 69 PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIG ++ M D L I +L + GYQ L L+SR Y G Sbjct: 64 PIIGADFNVASELMGDELT-------------QITVLAANNTGYQNLTLLISRAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E+ EGLI+L+GG G + R+ +S + L +++ F DR ++ Sbjct: 111 IAGPIIDRDWLAEL-QEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + V+LA +P+VATN F++EED++AH++ +A+ + Sbjct: 170 LVRTGRPDEESYLHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDPK 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR +P Y+++ EM +F+D+PEALEN+VEIA+RC+ +++ LP+F + Sbjct: 230 RPRHYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM--- 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RLA + A+ +Y +RL+ ELNVI +M F GYFLIV Sbjct: 287 --TTEDFLVMKSREGLEERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 DFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 524 DFAPLYCDENGQYPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLPP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ Sbjct: 584 IDIATIPLEDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 644 QSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F GA GI +++ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKKPEEMAKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ F Sbjct: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQF 823 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D I Y + AIKGVG I++A + F L D C+R D+KK+NRRV+E L+ Sbjct: 824 HVNDEGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+ +L++ K A K ++F G +D E VE Sbjct: 884 MSGAFDRLGPHRAALMSALNDALKAADQHAKAEAIGQADMF----GVLAD----EPEQVE 935 Query: 947 NS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996 S V+ + E+ LG Y +GHP++ Y K I R +G ++ T RG Sbjct: 936 QSYASVTPWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITV 995 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +V++ + T++G+RIG T + + E F Sbjct: 996 AAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|331645327|ref|ZP_08346438.1| DNA polymerase III subunit alpha [Escherichia coli M605] gi|330910034|gb|EGH38544.1| DNA polymerase 3 alpha subunit [Escherichia coli AA86] gi|331046084|gb|EGI18203.1| DNA polymerase III subunit alpha [Escherichia coli M605] Length = 1160 Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1053 (42%), Positives = 637/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGPAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA + LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAESRSLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|327392812|dbj|BAK10234.1| DNA polymerase III alpha subunit DnaE [Pantoea ananatis AJ13355] Length = 1160 Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1056 (41%), Positives = 633/1056 (59%), Gaps = 60/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G ++ K AA PAIAITD NL ++F A AG++ Sbjct: 4 PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHGAGVK 63 Query: 69 PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIG ++ M D L I +L + GYQ L L+SR Y G Sbjct: 64 PIIGADFNVASELMGDELT-------------QITVLAANNTGYQNLTLLISRAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E+ EGLI+L+GG G + R+ +S + L +++ F DR ++ Sbjct: 111 IAGPIIDRDWLAEL-QEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + V+LA +P+VATN F++EED++AH++ +A+ + Sbjct: 170 LVRTGRPDEESYLHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDPK 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR +P Y+++ EM +F+D+PEALEN+VEIA+RC+ +++ LP+F + Sbjct: 230 RPRHYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM--- 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RLA + A+ +Y +RL+ ELNVI +M F GYFLIV Sbjct: 287 --TTEDFLVMKSREGLEERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 DFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 524 DFAPLYCDENGQYPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLPP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ Sbjct: 584 IDIATIPLEDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 644 QSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F GA GI +++ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKKPEEMAKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ F Sbjct: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQF 823 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D I Y + AIKGVG I++A + F L D C+R D+KK+NRRV+E L+ Sbjct: 824 HVNDEGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+ +L++ K A K ++F G +D E VE Sbjct: 884 MSGAFDRLGPHRAALMSALNDALKAADQHAKAEAIGQADMF----GVLAD----EPEQVE 935 Query: 947 NS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996 S V+ + E+ LG Y +GHP++ Y K I R +G ++ T RG Sbjct: 936 QSYASVTPWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITV 995 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +V++ + T++G+RIG T + + E F Sbjct: 996 AAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|281177409|dbj|BAI53739.1| DNA polymerase III alpha subunit [Escherichia coli SE15] Length = 1160 Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1053 (42%), Positives = 637/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA + LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|258627365|ref|ZP_05722149.1| DNA polymerase III subunit alpha [Vibrio mimicus VM603] gi|258580403|gb|EEW05368.1| DNA polymerase III subunit alpha [Vibrio mimicus VM603] Length = 1159 Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1050 (42%), Positives = 633/1050 (60%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ K+AA PA+A+TD NL ++F A GI+ Sbjct: 4 PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + +L GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG I RA + Q EK L ++ F D Y+ L R Sbjct: 114 PVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + ++LA +ELP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEALEN+VEIA+RC+ +++ LP F E I Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNF-PTEGMAI- 288 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 289 ---EDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + D F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 885 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMF----GVLTDAPEEVEQKYTQ 940 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 941 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|262166322|ref|ZP_06034059.1| DNA polymerase III alpha subunit [Vibrio mimicus VM223] gi|262026038|gb|EEY44706.1| DNA polymerase III alpha subunit [Vibrio mimicus VM223] Length = 1159 Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/1050 (42%), Positives = 634/1050 (60%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ K+AA PA+A+TD NL ++F A GI+ Sbjct: 4 PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + +L GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG I RA + Q EK L ++ F D Y+ L R Sbjct: 114 PVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + ++LA +ELP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALELADQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEALEN+VEIA+RC+ +++ LP F E I Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNF-PTEGMAI- 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL AQ +Y +RL EL+VI +M F GYFLIV Sbjct: 289 ---EDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + D F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 885 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMF----GVLTDAPEEVEQKYTQ 940 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 941 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|258621011|ref|ZP_05716045.1| DNA polymerase III subunit alpha [Vibrio mimicus VM573] gi|258586399|gb|EEW11114.1| DNA polymerase III subunit alpha [Vibrio mimicus VM573] Length = 1159 Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/1050 (42%), Positives = 634/1050 (60%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ K+AA PA+A+TD NL ++F A GI+ Sbjct: 4 PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + +L GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG I RA + Q EK L ++ F D Y+ L R Sbjct: 114 PVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + ++LA +ELP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEALEN+VEIA+RC+ +++ LP F E I Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNF-PTEGMAI- 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL AQ +Y +RL EL+VI +M F GYFLIV Sbjct: 289 ---EDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDTRSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + D F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 885 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMF----GVLTDAPEEVEQKYTQ 940 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 941 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|262170786|ref|ZP_06038464.1| DNA polymerase III alpha subunit [Vibrio mimicus MB-451] gi|261891862|gb|EEY37848.1| DNA polymerase III alpha subunit [Vibrio mimicus MB-451] Length = 1159 Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1050 (42%), Positives = 633/1050 (60%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ K+AA PA+A+TD NL ++F A GI+ Sbjct: 4 PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + +L GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG I RA + Q EK L ++ F D Y+ L R Sbjct: 114 PVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + ++LA +ELP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEALEN+VEIA+RC+ +++ LP F E I Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNF-PTEGMAI- 288 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 289 ---EDFLVMKSREGLEERLEFLFPDLEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + D F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 885 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMF----GVLTDAPEEVEQKYTQ 940 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 941 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|91209254|ref|YP_539240.1| DNA polymerase III subunit alpha [Escherichia coli UTI89] gi|117622469|ref|YP_851382.1| DNA polymerase III subunit alpha [Escherichia coli APEC O1] gi|191172778|ref|ZP_03034315.1| DNA polymerase III, alpha subunit [Escherichia coli F11] gi|218557125|ref|YP_002390038.1| DNA polymerase III subunit alpha [Escherichia coli S88] gi|237704343|ref|ZP_04534824.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA] gi|331681569|ref|ZP_08382206.1| DNA polymerase III subunit alpha [Escherichia coli H299] gi|91070828|gb|ABE05709.1| DNA polymerase III alpha subunit [Escherichia coli UTI89] gi|115511593|gb|ABI99667.1| DNA polymerase III alpha subunit [Escherichia coli APEC O1] gi|190906928|gb|EDV66530.1| DNA polymerase III, alpha subunit [Escherichia coli F11] gi|218363894|emb|CAR01559.1| DNA polymerase III alpha subunit [Escherichia coli S88] gi|222032014|emb|CAP74753.1| DNA polymerase III subunit alpha [Escherichia coli LF82] gi|226902255|gb|EEH88514.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA] gi|294489552|gb|ADE88308.1| DNA polymerase III, alpha subunit [Escherichia coli IHE3034] gi|307629760|gb|ADN74064.1| DNA polymerase III subunit alpha [Escherichia coli UM146] gi|312944792|gb|ADR25619.1| DNA polymerase III subunit alpha [Escherichia coli O83:H1 str. NRG 857C] gi|320196939|gb|EFW71560.1| DNA polymerase III alpha subunit [Escherichia coli WV_060327] gi|323950817|gb|EGB46694.1| DNA polymerase III [Escherichia coli H252] gi|323955145|gb|EGB50920.1| DNA polymerase III [Escherichia coli H263] gi|331081790|gb|EGI52951.1| DNA polymerase III subunit alpha [Escherichia coli H299] Length = 1160 Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1053 (42%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|218688059|ref|YP_002396271.1| DNA polymerase III subunit alpha [Escherichia coli ED1a] gi|306815217|ref|ZP_07449366.1| DNA polymerase III subunit alpha [Escherichia coli NC101] gi|331661255|ref|ZP_08362187.1| DNA polymerase III subunit alpha [Escherichia coli TA206] gi|218425623|emb|CAR06409.1| DNA polymerase III alpha subunit [Escherichia coli ED1a] gi|305850879|gb|EFM51334.1| DNA polymerase III subunit alpha [Escherichia coli NC101] gi|331052297|gb|EGI24336.1| DNA polymerase III subunit alpha [Escherichia coli TA206] Length = 1160 Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1053 (42%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|119774291|ref|YP_927031.1| DNA polymerase III subunit alpha [Shewanella amazonensis SB2B] gi|119766791|gb|ABL99361.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 1157 Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1046 (41%), Positives = 627/1046 (59%), Gaps = 42/1046 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL K A+ AIA+TD NNL ++F GI+ Sbjct: 4 PRFVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D + + F V +L EGYQ L +L+S+ YL Q + Sbjct: 64 PIIGA-------DFWMLVPGFEDEFCAV---TVLAMDNEGYQNLTQLISQAYLRGQVQGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 V I WL + G+++L+G G + +A ++ A ++K F DR ++ L R Sbjct: 114 VAIDQEWLLTYNS-GILLLSGAKEGDLGKALIKGNAAQAASLTQFYQKHFPDRYFIELIR 172 Query: 189 HRGYDRYRESQVVQLAYTHE----LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 R E + +A H LP+VATN +FLS ED+EAH++ +A+ ++ Sbjct: 173 ---TGRADEETYLHMAVKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNR 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ + YL++ EM +FSD+PEA+ENTVEIA+RC+ +++ LP F E Sbjct: 230 RPKKYSEQQYLRSEDEMCELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPNFPTGEL--- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L ++ GLE RL + ++Y +RLD EL VI +M F GYFLIV Sbjct: 287 --STADFLVERSKEGLEERLEFLFPDPAERAEKRKEYDERLDIELQVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L Y VDR+ K+IP Sbjct: 405 DFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +P ++ +A + +EA AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PEPGMTLA-KAFEVEPGLQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 524 DFSPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 584 VDIAAIPLDDSKSFSVLKRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G E+I H + P+L+ T G+I+YQEQVMQIAQ L+GY+L Sbjct: 644 QSGMVDNFIDRKHGHEEISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F +G+ KNG+ +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKKPEEMAKQRAGFEAGSVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+KTH+P EF+AA M+ +MDN +KI + + ++I+PP VN F Sbjct: 764 YALVSYQTLWLKTHFPSEFMAAVMSADMDNTDKIVTLVDECDRMGLKIIPPDVNKGLFKF 823 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V ++ I Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L++ Sbjct: 824 TVDEDLNIVYGIGAIKGVGEGPVEAILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLIY 883 Query: 888 AGALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GALD G R ++ +L + +Q Q + T +H+ +K + + Sbjct: 884 SGALDSLGPHRASMMATLPEAMQAADQHAKAQATGQHDMFGLLNDDQQDEKQQFVECTPW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 944 PDKIWLEGERETLGLYLTGHPINQYLKELKNYTSGRLKDIHPTERGKTVKAAGLVVASRV 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1004 MLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|254037603|ref|ZP_04871680.1| DNA polymerase III alpha subunit [Escherichia sp. 1_1_43] gi|226840709|gb|EEH72711.1| DNA polymerase III alpha subunit [Escherichia sp. 1_1_43] Length = 1160 Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 637/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H ++ P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHEILKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|293403253|ref|ZP_06647350.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412] gi|298378789|ref|ZP_06988673.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302] gi|291430168|gb|EFF03182.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412] gi|298281123|gb|EFI22624.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302] Length = 1162 Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1053 (42%), Positives = 638/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 6 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 66 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 116 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 174 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA + LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 175 TGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 234 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F D+ E Sbjct: 235 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF---PTGDMSTE 291 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + +R K GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 292 DYLVMRAKE--GLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 350 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 410 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 469 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 470 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 528 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 529 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 589 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 648 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 649 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 709 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 769 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 828 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 829 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 888 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 889 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 940 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 941 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 1000 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 1001 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1033 >gi|218703438|ref|YP_002410957.1| DNA polymerase III subunit alpha [Escherichia coli UMN026] gi|218430535|emb|CAR11401.1| DNA polymerase III alpha subunit [Escherichia coli UMN026] gi|284919959|emb|CBG33014.1| DNA polymerase III alpha subunit [Escherichia coli 042] Length = 1160 Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1053 (42%), Positives = 638/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA + LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F D+ E Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF---PTGDMSTE 289 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + +R K GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 290 DYLVMRAKE--GLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|292492697|ref|YP_003528136.1| DNA polymerase III subunit alpha [Nitrosococcus halophilus Nc4] gi|291581292|gb|ADE15749.1| DNA polymerase III, alpha subunit [Nitrosococcus halophilus Nc4] Length = 1158 Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/1046 (43%), Positives = 637/1046 (60%), Gaps = 42/1046 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YS+++G + + ++ PA+A+TD NN+F+ ++F + A A G++P Sbjct: 4 SFVHLHLHTEYSMVDGLVRIRPLVRAAREAGMPAVAVTDQNNIFAMVKFYRAAQAEGVKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG D+ + D+ + + + + LL GY L L+SR Y Q Sbjct: 64 IIGA--DVFLVDSTESSRASR--------VTLLCQNEGGYCNLSRLLSRAYSEGQYHGVP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 R+ +WLQ ++GLI+L+GG G + +A ++ A+K L ++ LF R Y+ L R Sbjct: 114 RLQWNWLQS-QSDGLIVLSGGREGDVGQALLAGNNIQAKKLLERWQALFPGRYYLELHRT 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G + Y V LA + P+VATN+ FL +D+EAH+ + + + RPR Sbjct: 173 GREGEEDYLHGAVA-LALACDTPVVATNDVRFLRTQDFEAHEARVCIHEGRTLDDPRRPR 231 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + YL+ SEM +F+DLPEALENTVEIARRC+ L + + LP F E I+ Sbjct: 232 HYSEQQYLRTSSEMAELFADLPEALENTVEIARRCNLELTLGSHYLPNFPVPEGLSIEAF 291 Query: 307 EENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E E R GLE RLA+ + Y RL EL VI +M F GYFLIVADF Sbjct: 292 LEVEARR----GLEQRLAKLYPSETDREIKQPTYETRLAEELAVINQMGFPGYFLIVADF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S+PDFDIDFC Sbjct: 348 IRWAKKNGIPVGPGRGSGAGSLVAYALQITDLDPLAFDLLFERFLNPERVSLPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RRD VI YV + YG + V+QIIT+GS+ AKA +RDVGR L PY VD++ KLIP D Sbjct: 408 MERRDRVIEYVSHYYGRDHVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFDL 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ + R + V L+++++KLEGL R+A HA G+VI + L++ V Sbjct: 468 KMTLD-KALEESEGLRARYEEEEEVRFLIDLARKLEGLTRNAGKHAGGVVIAPKKLTEYV 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VDL 598 P Y + + VTQF+ IE GL+KFDFLGL+TLT++ +L + AQ+G +DL Sbjct: 527 PYYCEQGASGVVTQFDKDDIEAIGLVKFDFLGLRTLTIIDWALQAINQQRAQQGTAPLDL 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +L+P +D E+Y LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 ALLPMNDPESYALLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +V Y NRK+G+ K+ HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L AD+LRRA Sbjct: 647 MVDDYINRKHGRAKVDYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRA 706 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM KQ+ F GA G+ + A IF+L+ KFA+YGFNKSH+AAYA+I+YQT Sbjct: 707 MGKKKPEEMAKQRAIFTEGAKARGVEEERATAIFDLMEKFAEYGFNKSHSAAYALIAYQT 766 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRI 835 A++K HYP ++AA ++ +MDN EK+ F Q+ + N++++PP VN F G N I Sbjct: 767 AYLKAHYPAPYMAAVLSSDMDNTEKVAAFIQECQVMNLEVLPPDVNVSDYRFSAQGKNAI 826 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y L AIKGVG I+ E P+ L +FC R+D +K+NRRVLE+L +GALD Sbjct: 827 RYGLGAIKGVGAAALEGIIKEREQHGPYQDLFEFCRRIDLRKINRRVLEALNRSGALDPL 886 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVR 951 G +R L SL+ A+ +N + ++F + +G+ + T + E + Sbjct: 887 GANRATLEASLETALALAEQHSRNTSLGQNDLFGLDCVLEGSQAGNYTETQEWDEEQRLA 946 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRGN---NIRLAAMVVSKQQ 1006 E E LG Y SGHP+D Y+ LR++ + E S A+ R N + +A ++ S + Sbjct: 947 LEKE--TLGLYLSGHPIDRYEQELRQIAPRRLAELVSQASNRLNYNQRVIIAGLIGSVRT 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 K R+G R +VT + + E F Sbjct: 1005 SKARQGGRNAFVTLDDRSARLEVKTF 1030 >gi|197265397|ref|ZP_03165471.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243652|gb|EDY26272.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 1160 Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATNN FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNNVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|323935024|gb|EGB31397.1| DNA polymerase III [Escherichia coli E1520] Length = 1160 Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNNGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|74310804|ref|YP_309223.1| DNA polymerase III subunit alpha [Shigella sonnei Ss046] gi|73854281|gb|AAZ86988.1| DNA polymerase III alpha subunit [Shigella sonnei Ss046] Length = 1160 Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|293408276|ref|ZP_06652116.1| DNA polymerase III subunit alpha [Escherichia coli B354] gi|291472527|gb|EFF15009.1| DNA polymerase III subunit alpha [Escherichia coli B354] Length = 1162 Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 6 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 66 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 116 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 174 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 175 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 234 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 235 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 289 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 290 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 350 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 410 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 469 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 470 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 528 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 529 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 589 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 648 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 649 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 709 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 769 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 828 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 829 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 888 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 889 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 940 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 941 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 1000 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 1001 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1033 >gi|82542783|ref|YP_406730.1| DNA polymerase III subunit alpha [Shigella boydii Sb227] gi|81244194|gb|ABB64902.1| DNA polymerase III alpha subunit [Shigella boydii Sb227] Length = 1142 Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNG++ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGVNAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|170682325|ref|YP_001742312.1| DNA polymerase III subunit alpha [Escherichia coli SMS-3-5] gi|170520043|gb|ACB18221.1| DNA polymerase III, alpha subunit [Escherichia coli SMS-3-5] Length = 1160 Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 637/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA + LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGIRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|194428253|ref|ZP_03060795.1| DNA polymerase III, alpha subunit [Escherichia coli B171] gi|194413628|gb|EDX29908.1| DNA polymerase III, alpha subunit [Escherichia coli B171] Length = 1160 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEATYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|218547639|ref|YP_002381430.1| DNA polymerase III subunit alpha [Escherichia fergusonii ATCC 35469] gi|218355180|emb|CAQ87787.1| DNA polymerase III alpha subunit [Escherichia fergusonii ATCC 35469] gi|323975648|gb|EGB70744.1| DNA polymerase III [Escherichia coli TW10509] gi|324112405|gb|EGC06382.1| DNA polymerase III [Escherichia fergusonii B253] Length = 1160 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 635/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|110640403|ref|YP_668131.1| DNA polymerase III subunit alpha [Escherichia coli 536] gi|110341995|gb|ABG68232.1| DNA polymerase III alpha subunit [Escherichia coli 536] Length = 1160 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++R++VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKREQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|194435013|ref|ZP_03067254.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012] gi|194416749|gb|EDX32877.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012] Length = 1160 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1053 (42%), Positives = 634/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAVNNTGYQNLTLLISKAYQRGYGPAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKSAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL N K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGNALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|153208946|ref|ZP_01947159.1| DNA polymerase III, alpha subunit [Coxiella burnetii 'MSU Goat Q177'] gi|212218747|ref|YP_002305534.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuK_Q154] gi|120575604|gb|EAX32228.1| DNA polymerase III, alpha subunit [Coxiella burnetii 'MSU Goat Q177'] gi|212013009|gb|ACJ20389.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuK_Q154] Length = 1143 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1037 (41%), Positives = 636/1037 (61%), Gaps = 39/1037 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS YS+++ + ++ +L + + PA+A+TD NLF+ ++F ++A GI+P Sbjct: 4 SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + D+ V L G++ LI+L+SR Y+ + + V Sbjct: 64 IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + EGLI+L+G G + +A S +AE+RL + F R Y+ LQR Sbjct: 111 LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169 Query: 190 RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D+ E V++LA H +P+VATN FLS+ D+EAH+ + + ++ +RPR Sbjct: 170 R-RDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPR 228 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D Y K+ EM ++FSD+PEALENTVEIA+RCS L + LP+F + Sbjct: 229 EYSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKV--- 285 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ R +A GL RL + +DY +RL+ E+ VI +M F+ YFLIVADFI W Sbjct: 286 -EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAW 344 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+++IPVGPGRGSGAGS+ AY+L IT++DPL LLFERFLN +R+SMPDFDIDFC + Sbjct: 345 AKQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEG 404 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI YV +YG E VAQIIT+G++ A+A LRDVGR L +PY VD++ KL+P + Sbjct: 405 RDRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG-- 462 Query: 487 VSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L+ + R A D V L++++ KLEGL R+A HA G+VI L+ VP+ Sbjct: 463 VTLEKALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPL 522 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDLSL 600 Y + SD VTQF+ +E GL+KFDFLGL+TLT++ ++ + A+R ++ +D+ Sbjct: 523 YSEPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGT 582 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +TY LL + T +FQLES GM++ + +QPD DI+ALV+L+RPGP+ + +V Sbjct: 583 IPLDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMV 642 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + K+G++ + +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL ADVLR AMG Sbjct: 643 ETFIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMG 702 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ+ F+ G G+ + +A IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW Sbjct: 703 KKKPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAW 762 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837 +K HYP EF+AA ++ +MDN +K+ F + R N++++PP++N F V +I Y Sbjct: 763 LKAHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVY 822 Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKGVG A +I+ A+ F L +FCSRVD +K+NRR +E L+ +GA+D FG Sbjct: 823 GLGAIKGVGEAAAMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGV 882 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENE 955 SR L +SL + A+ ++ ++F E KG D + ++ N S R E Sbjct: 883 SRASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDEDYTEVPEW---NDSDRLRGE 939 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHPL ++ +G ++ N++ +A M++ + TR G R+ Sbjct: 940 KETLGLYVSGHPLQACIKEMKAVGAVPINH-LSLSEKNSVVVAGMMMGMRTITTRSGKRM 998 Query: 1016 GWVTFSEPAKEYEANFF 1032 ++ + + + F Sbjct: 999 AILSLEDQTGKIDVTLF 1015 >gi|293476841|ref|ZP_06665249.1| DNA polymerase III subunit alpha [Escherichia coli B088] gi|291321294|gb|EFE60736.1| DNA polymerase III subunit alpha [Escherichia coli B088] Length = 1162 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 6 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 66 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 116 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 174 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 175 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 234 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 235 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 289 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 290 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 350 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 410 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 469 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 470 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 528 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 529 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 589 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 648 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 649 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 709 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 769 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 828 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 829 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 888 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 889 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 940 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 941 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 1000 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 1001 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1033 >gi|16128177|ref|NP_414726.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|89107064|ref|AP_000844.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr. W3110] gi|157158983|ref|YP_001461353.1| DNA polymerase III subunit alpha [Escherichia coli E24377A] gi|170079820|ref|YP_001729140.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|188493055|ref|ZP_03000325.1| DNA polymerase III, alpha subunit [Escherichia coli 53638] gi|193063148|ref|ZP_03044239.1| DNA polymerase III, alpha subunit [Escherichia coli E22] gi|209917374|ref|YP_002291458.1| DNA polymerase III subunit alpha [Escherichia coli SE11] gi|218552765|ref|YP_002385678.1| DNA polymerase III subunit alpha [Escherichia coli IAI1] gi|218693649|ref|YP_002401316.1| DNA polymerase III subunit alpha [Escherichia coli 55989] gi|238899582|ref|YP_002925378.1| DNA polymerase III alpha subunit [Escherichia coli BW2952] gi|256021616|ref|ZP_05435481.1| DNA polymerase III subunit alpha [Shigella sp. D9] gi|256025496|ref|ZP_05439361.1| DNA polymerase III subunit alpha [Escherichia sp. 4_1_40B] gi|260842416|ref|YP_003220194.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str. 12009] gi|293418069|ref|ZP_06660691.1| DNA polymerase III subunit alpha [Escherichia coli B185] gi|307136784|ref|ZP_07496140.1| DNA polymerase III subunit alpha [Escherichia coli H736] gi|307311368|ref|ZP_07591010.1| DNA polymerase III, alpha subunit [Escherichia coli W] gi|331640638|ref|ZP_08341786.1| DNA polymerase III subunit alpha [Escherichia coli H736] gi|331666425|ref|ZP_08367306.1| DNA polymerase III subunit alpha [Escherichia coli TA271] gi|331680763|ref|ZP_08381422.1| DNA polymerase III subunit alpha [Escherichia coli H591] gi|118794|sp|P10443|DPO3A_ECOLI RecName: Full=DNA polymerase III subunit alpha gi|146663|gb|AAC36920.1| DNA polymerase III holoenzyme, alpha subunit [Escherichia coli] gi|1552761|gb|AAB08613.1| DNA polymerase III alpha chain [Escherichia coli] gi|1786381|gb|AAC73295.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|4902925|dbj|BAA77859.1| DNA polymerase III alpha subunit [Escherichia coli str. K12 substr. W3110] gi|157081013|gb|ABV20721.1| DNA polymerase III, alpha subunit [Escherichia coli E24377A] gi|169887655|gb|ACB01362.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|188488254|gb|EDU63357.1| DNA polymerase III, alpha subunit [Escherichia coli 53638] gi|192931056|gb|EDV83659.1| DNA polymerase III, alpha subunit [Escherichia coli E22] gi|209910633|dbj|BAG75707.1| DNA polymerase III alpha subunit [Escherichia coli SE11] gi|218350381|emb|CAU96064.1| DNA polymerase III alpha subunit [Escherichia coli 55989] gi|218359533|emb|CAQ97071.1| DNA polymerase III alpha subunit [Escherichia coli IAI1] gi|238860829|gb|ACR62827.1| DNA polymerase III alpha subunit [Escherichia coli BW2952] gi|257757563|dbj|BAI29060.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str. 12009] gi|260450613|gb|ACX41035.1| DNA polymerase III, alpha subunit [Escherichia coli DH1] gi|291430787|gb|EFF03785.1| DNA polymerase III subunit alpha [Escherichia coli B185] gi|306908347|gb|EFN38845.1| DNA polymerase III, alpha subunit [Escherichia coli W] gi|315059402|gb|ADT73729.1| DNA polymerase III alpha subunit [Escherichia coli W] gi|315134874|dbj|BAJ42033.1| DNA polymerase III subunit alpha [Escherichia coli DH1] gi|320200290|gb|EFW74876.1| DNA polymerase III alpha subunit [Escherichia coli EC4100B] gi|323380039|gb|ADX52307.1| DNA polymerase III, alpha subunit [Escherichia coli KO11] gi|323939940|gb|EGB36138.1| DNA polymerase III [Escherichia coli E482] gi|323945661|gb|EGB41710.1| DNA polymerase III [Escherichia coli H120] gi|323970663|gb|EGB65919.1| DNA polymerase III [Escherichia coli TA007] gi|324118304|gb|EGC12199.1| DNA polymerase III [Escherichia coli E1167] gi|331040384|gb|EGI12591.1| DNA polymerase III subunit alpha [Escherichia coli H736] gi|331066636|gb|EGI38513.1| DNA polymerase III subunit alpha [Escherichia coli TA271] gi|331072226|gb|EGI43562.1| DNA polymerase III subunit alpha [Escherichia coli H591] gi|332105210|gb|EGJ08556.1| DNA polymerase subunit III alpha [Shigella sp. D9] Length = 1160 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|15799866|ref|NP_285878.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 EDL933] gi|15829440|ref|NP_308213.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. Sakai] gi|168752166|ref|ZP_02777188.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|168758707|ref|ZP_02783714.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|168764953|ref|ZP_02789960.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|168769951|ref|ZP_02794958.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|168777708|ref|ZP_02802715.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|168782076|ref|ZP_02807083.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|168789293|ref|ZP_02814300.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC869] gi|168802470|ref|ZP_02827477.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|195939880|ref|ZP_03085262.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. EC4024] gi|208806614|ref|ZP_03248951.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208812760|ref|ZP_03254089.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208820436|ref|ZP_03260756.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209398477|ref|YP_002268792.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|217326041|ref|ZP_03442125.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|254791317|ref|YP_003076154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. TW14359] gi|261226938|ref|ZP_05941219.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261255342|ref|ZP_05947875.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. FRIK966] gi|81848972|sp|Q8X8X5|DPO3A_ECO57 RecName: Full=DNA polymerase III subunit alpha gi|12512912|gb|AAG54486.1|AE005194_7 DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EDL933] gi|13359642|dbj|BAB33609.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. Sakai] gi|187767109|gb|EDU30953.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|188013925|gb|EDU52047.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|189000426|gb|EDU69412.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|189354514|gb|EDU72933.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|189361079|gb|EDU79498.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|189365137|gb|EDU83553.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|189371108|gb|EDU89524.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC869] gi|189375552|gb|EDU93968.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|208726415|gb|EDZ76016.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208734037|gb|EDZ82724.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208740559|gb|EDZ88241.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209159877|gb|ACI37310.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|209745704|gb|ACI71159.1| DNA polymerase III alpha subunit [Escherichia coli] gi|209745706|gb|ACI71160.1| DNA polymerase III alpha subunit [Escherichia coli] gi|209745708|gb|ACI71161.1| DNA polymerase III alpha subunit [Escherichia coli] gi|209745712|gb|ACI71163.1| DNA polymerase III alpha subunit [Escherichia coli] gi|217322262|gb|EEC30686.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|254590717|gb|ACT70078.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. TW14359] gi|320190290|gb|EFW64940.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. EC1212] gi|320644760|gb|EFX13804.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str. 493-89] gi|320652916|gb|EFX21154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str. H 2687] gi|320658304|gb|EFX26033.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320668927|gb|EFX35722.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. LSU-61] gi|326339761|gb|EGD63569.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1044] gi|326345095|gb|EGD68838.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1125] Length = 1160 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|157159649|ref|YP_001456967.1| DNA polymerase III subunit alpha [Escherichia coli HS] gi|191167047|ref|ZP_03028869.1| DNA polymerase III, alpha subunit [Escherichia coli B7A] gi|194439917|ref|ZP_03071979.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1] gi|253774789|ref|YP_003037620.1| DNA polymerase III subunit alpha [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160303|ref|YP_003043411.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606] gi|331651089|ref|ZP_08352117.1| DNA polymerase III subunit alpha [Escherichia coli M718] gi|157065329|gb|ABV04584.1| DNA polymerase III, alpha subunit [Escherichia coli HS] gi|190902940|gb|EDV62667.1| DNA polymerase III, alpha subunit [Escherichia coli B7A] gi|194421163|gb|EDX37188.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1] gi|242376015|emb|CAQ30698.1| DNA polymerase III, alpha subunit, subunit of DNA polymerase III, core enzyme and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253325833|gb|ACT30435.1| DNA polymerase III, alpha subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972204|gb|ACT37875.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606] gi|253976413|gb|ACT42083.1| DNA polymerase III subunit alpha [Escherichia coli BL21(DE3)] gi|309700392|emb|CBI99680.1| DNA polymerase III alpha subunit [Escherichia coli ETEC H10407] gi|323959945|gb|EGB55592.1| DNA polymerase III [Escherichia coli H489] gi|331051543|gb|EGI23592.1| DNA polymerase III subunit alpha [Escherichia coli M718] Length = 1160 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|218698604|ref|YP_002406233.1| DNA polymerase III subunit alpha [Escherichia coli IAI39] gi|218368590|emb|CAR16327.1| DNA polymerase III alpha subunit [Escherichia coli IAI39] Length = 1160 Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGIRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|193067721|ref|ZP_03048688.1| DNA polymerase III, alpha subunit [Escherichia coli E110019] gi|192959133|gb|EDV89569.1| DNA polymerase III, alpha subunit [Escherichia coli E110019] Length = 1160 Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHENLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|118580484|ref|YP_901734.1| DNA polymerase III, alpha subunit [Pelobacter propionicus DSM 2379] gi|118503194|gb|ABK99676.1| DNA polymerase III, alpha subunit [Pelobacter propionicus DSM 2379] Length = 1184 Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1048 (41%), Positives = 638/1048 (60%), Gaps = 30/1048 (2%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 +Q+ ++P FVHL VH+ YSLL+GA+ L +++ K A PA+AITD N+F A+EF K Sbjct: 7 SQHPPQAP-FVHLHVHTQYSLLDGAIRLEDLIAKAKAHNMPALAITDHGNMFGAVEFYLK 65 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 AGI+P+IGC++ I D+ + ++LL +GY+ L L S Y Sbjct: 66 CKKAGIKPLIGCEVYI-APDSRFSRESTRGISEAAYHLILLCENMQGYRNLSYLTSAGY- 123 Query: 122 LDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 +G RI LQE +EGLI L+ G + F + A + + +LF D Sbjct: 124 -KEGFYYRPRIDRELLQE-HSEGLIALSACLKGEVAMQCFRDRMDDALETARWYSQLFPD 181 Query: 181 RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 R Y+ LQ + ++ +++++A T +LPLVATN+ +L+ ED AH+VL+ + Sbjct: 182 RYYIELQENTLPEQDVVNKRLMEVAATLQLPLVATNDCHYLNREDARAHEVLLCIQTGKT 241 Query: 240 VSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFIL-----QVHAPILP 293 +S + + + Y+K+ EMV+ F PEA+ NT++IA RC L + H P Sbjct: 242 MSDPSHMKFSAEEFYVKSPEEMVAAFGYAPEAVSNTLKIADRCDLKLPLDTGEYHFPHFD 301 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIA 349 K DD+ L AV GL+ R LA+ Q Y +RL EL I Sbjct: 302 PPAGKNHDDM-------LEELAVQGLKERMVTILAKYPDMSLERRQAYFERLQIELKCIR 354 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M+F YFLIV+DFI WAK IPVGPGRGS AGS+ AYA+ ITD+DPL ++LLFERFLN Sbjct: 355 EMQFPAYFLIVSDFITWAKNKGIPVGPGRGSAAGSLVAYAIRITDLDPLPYNLLFERFLN 414 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R++MPD D+DFCQDRR+EVI+YV KYG ERV QIITFG+++AKA +RDVGRAL M Y Sbjct: 415 PERITMPDIDVDFCQDRREEVIQYVIEKYGRERVCQIITFGTMKAKAVVRDVGRALNMTY 474 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 VDR+ KLIP+D ++ +A+ + + E DP V LL+ + LEGL RHASTHA Sbjct: 475 GDVDRIAKLIPDDLKMTLA-KALKQEPQLNEMAERDPQVRDLLDTALCLEGLTRHASTHA 533 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+V+ R L + +P+Y+D ++ TQ++MK++E GL+KFDFLGLK LT+++ ++ + Sbjct: 534 AGVVVAPRQLEEFLPVYKDQKTGSINTQYSMKYVEMVGLVKFDFLGLKNLTVIENAVHLV 593 Query: 590 -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 A + D++ + DD E+Y L+++ T GIFQLESSGM++ L ++P C ED+IA + Sbjct: 594 RAGKDPDFDITRLRDDDSESYDLISSGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACA 653 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+ +V + RK+G++K+V P ++P+LK+T GVI+YQEQVMQI++ L+GYS Sbjct: 654 LYRPGPLGCGMVDEFIERKHGRQKVVYDLPQLEPILKDTYGVIVYQEQVMQISRTLAGYS 713 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK M K+KE F+ GA GI A IF+ +AKFA+YGFNKSH+ Sbjct: 714 LGRADLLRRAMGKKDPAVMAKEKEPFLEGAKAQGIDPKKAEAIFDQMAKFAEYGFNKSHS 773 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA+I+YQTAW+K+HYPVEFLAA +T +MD+ +K+ K D R+ I+++PP VN + Sbjct: 774 AAYALIAYQTAWLKSHYPVEFLAALLTCDMDSTDKVIKNINDCREQGIEVLPPDVNKSGL 833 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V N + + L A+KGVGT I+EA D PF + DFC RVD ++ N++VLE+L+ Sbjct: 834 TFTVVGNSMRFGLGAVKGVGTGAVEAILEARQDGPFKDVYDFCERVDMRRSNKKVLEALI 893 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFS 944 GA D R +++ L+ + Q +++ R + ++F ++ S + L Sbjct: 894 KCGAFDSTNAPRAAMMEGLETAMNFGQRIQQERASAQVSLFGDDEVARSGGNGHRLPDVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + + E+ LGF +GHPLD Y ++++ G IR+ +V S Sbjct: 954 EWHDKEKLALEKEALGFLITGHPLDRYVDDIKRLNCVEISRLTEQADGGEIRVCGIVSSL 1013 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ T+KG R+G+VT + E F Sbjct: 1014 KEITTKKGDRMGFVTIEDLTGSVEVTVF 1041 >gi|88608539|ref|YP_506064.1| DNA polymerase III, alpha subunit [Neorickettsia sennetsu str. Miyayama] gi|88600708|gb|ABD46176.1| DNA polymerase III, alpha subunit [Neorickettsia sennetsu str. Miyayama] Length = 1077 Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/975 (45%), Positives = 609/975 (62%), Gaps = 70/975 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL+V S YSLL I+D A PA+A+TD + + ALEF++ A A+GIQP Sbjct: 5 TFVHLRVRSDYSLLRAVTKPRRIVDLARAAGMPAVALTDIDTMAGALEFAEYAKASGIQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-TAEGYQRLIELVSRMYLLDQGKQS 128 IIG L I V S VLL++ EGY +I+L G S Sbjct: 65 IIGIDLSISHN--------------RVDSRVLLIAKNEEGYHNMIKL--------SGIVS 102 Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNS----SQVAEKRLLTFKKLFGDRL 182 +R L E+ T +GLI+L G FF ++ S AE + K++FG L Sbjct: 103 LRRV--ALNEVFTHSKGLILLLG--------EFFIDAINSYSIDAETLVSDLKQVFGKDL 152 Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 +V +QR ++ E +++QL Y H +P VATN+ LF + EAHDVL + T V+ Sbjct: 153 FVEIQRLG--NQSAEEKLIQLGYEHNIPFVATNDVLFPDTDFREAHDVLTCIGSLTYVND 210 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R +P+ Y K+ EM+++F+DL EAL NTV IARRCSF+ +V +PILP+F EC Sbjct: 211 INRVHYSPESYFKSAEEMIALFADLKEALHNTVLIARRCSFMPEVRSPILPKF---EC-- 265 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + +E +ELR + GL R+ Q+Y RL++EL +I M ++GYFLIVAD Sbjct: 266 -EMDESDELRRLSYIGLHRRMGADV------PQNYLDRLEYELGIIIDMNYAGYFLIVAD 318 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K N I VGPGRGSG GS+ A+ L IT +DPL+F+L FERFLNP R+SMPDFD+DF Sbjct: 319 FIRWSKANGIVVGPGRGSGVGSIVAWCLGITGLDPLKFALFFERFLNPVRVSMPDFDVDF 378 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ++R VI YV+ KYGH VAQI+TFG+LQ +AALRDVGR LQ+PY +VDR+CK+IPN+ Sbjct: 379 CQEKRHLVIEYVRKKYGH--VAQIMTFGTLQPRAALRDVGRVLQLPYGRVDRICKMIPNN 436 Query: 483 PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+P+SLQ AI D + D S+ +LL+++ KLEG RH STHAAGIVI D P+ Sbjct: 437 PANPISLQEAINLDKDLQRESEDDESIAKLLDLALKLEGTLRHTSTHAAGIVISDTPIED 496 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 +P+Y D SD+PVTQ++MK++EKAGLIKFDFLGLKTLT++ ++ + + D+ I Sbjct: 497 YLPVYHDKESDIPVTQYSMKYVEKAGLIKFDFLGLKTLTVINQACLLVRLKNPNFDIDSI 556 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY LL+ +G+FQL+++ M + L+ + PDC EDIIAL+SL RPGP+ NI Y Sbjct: 557 PLDDKRTYDLLSAGNAIGVFQLDNAYMCETLKRLHPDCFEDIIALISLNRPGPMANIPTY 616 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+GKE + HPL++ LKET GV+IYQEQVM++ +LL+GY+L+EAD+LRR MGKKI Sbjct: 617 IARKHGKEAVKYPHPLLESSLKETFGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKI 676 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 + EM +Q E+F+ GA +NGI A IFE++ KFA YGFNKSHAAAYA+ISYQTA++K Sbjct: 677 RAEMSEQAEKFVEGAKRNGIETERAQEIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKA 736 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 ++P+EF A++ LE+ + +K+ QDA+ + I I+PP +N + F + DN I YSLAA Sbjct: 737 NFPIEFTTAALNLELHHTDKLAILIQDAKNYGITILPPDINKSKILFSIEDNAIRYSLAA 796 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 +K VG A I S PF ++ + +D K ++R+ +ESL+ +GA D R L Sbjct: 797 LKNVGEAAASAIQRRS---PFATIPELQRCLDGKIVHRKAVESLIKSGATDVLSPDRSGL 853 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 L + V K +F + F E + F+ GF Sbjct: 854 YSCL------KELVGKEDDGAQMTLFDISVNKPEKTVKPWNF-FERTQCEFD----AFGF 902 Query: 962 YFSGHPLDVYKPILR 976 + HPL Y+ L+ Sbjct: 903 FLFDHPLFPYRKFLK 917 >gi|331671690|ref|ZP_08372488.1| DNA polymerase III subunit alpha [Escherichia coli TA280] gi|331071535|gb|EGI42892.1| DNA polymerase III subunit alpha [Escherichia coli TA280] Length = 1160 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1053 (42%), Positives = 637/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F D+ E Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF---PTGDMSTE 289 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + +R K GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 290 DYLVMRAKE--GLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|260866333|ref|YP_003232735.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str. 11128] gi|257762689|dbj|BAI34184.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str. 11128] Length = 1160 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGVAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|320639990|gb|EFX09575.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. G5101] Length = 1160 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTVPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|154706370|ref|YP_001424773.1| DNA polymerase III alpha subunit [Coxiella burnetii Dugway 5J108-111] gi|154355656|gb|ABS77118.1| DNA polymerase III alpha subunit [Coxiella burnetii Dugway 5J108-111] Length = 1143 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1037 (41%), Positives = 633/1037 (61%), Gaps = 39/1037 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS YS+++ + ++ +L + + PA+A+TD NLF+ ++F ++A GI+P Sbjct: 4 SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + D+ V L G++ LI+L+SR Y+ + + V Sbjct: 64 IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + EGLI+L+G G + +A S +AE+RL + F R Y+ LQR Sbjct: 111 LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169 Query: 190 RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D+ E V++LA H +P+VATN FLS+ D+EAH+ + + ++ +RPR Sbjct: 170 R-RDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPR 228 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D Y K+ EM ++FSD+PEALENTVEIA+RCS L + LP+F + Sbjct: 229 EYSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKV--- 285 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ R +A GL RL + +DY +RL+ E+ VI +M F+ YFLIVADFI W Sbjct: 286 -EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAW 344 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+++IPVGPGRGSGAGS+ AY+L IT++DPL LLFERFLN +R+SMPDFDIDFC + Sbjct: 345 AKQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEG 404 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI YV +YG E VAQIIT+G++ A+A LRDVGR L +PY VD++ KL+P + Sbjct: 405 RDRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG-- 462 Query: 487 VSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L+ + R A D V L++++ KLEGL R+A HA G+VI L+ VP+ Sbjct: 463 VTLEKALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPL 522 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSL 600 Y + SD VTQF+ +E GL+KFDFLGL+TLT++ ++ + Q ++D+ Sbjct: 523 YSEPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKCKIQNETELDIGT 582 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +TY LL + T +FQLES GM++ + +QPD DI+ALV+L+RPGP+ + +V Sbjct: 583 IPLDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMV 642 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + K+G++ + +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL ADVLR AMG Sbjct: 643 ETFIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMG 702 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ+ F+ G G+ + +A IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW Sbjct: 703 KKKPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAW 762 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837 +K HYP EF+AA ++ +MDN +K+ F + R N++++PP++N F V +I Y Sbjct: 763 LKAHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVY 822 Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKGVG A +I+ A+ F L +FCSRVD +K+NRR +E L+ +GA+D FG Sbjct: 823 GLGAIKGVGEAAAMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGV 882 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENE 955 SR L +SL + A+ ++ ++F E KG D + ++ N S R E Sbjct: 883 SRASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDEDYTEVPEW---NDSDRLRGE 939 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHPL ++ +G ++ N++ +A M++ + TR G R+ Sbjct: 940 KETLGLYVSGHPLQACIKEMKAVGAVPINH-LSLSEKNSVVVAGMMMGMRTITTRSGKRM 998 Query: 1016 GWVTFSEPAKEYEANFF 1032 ++ + + + F Sbjct: 999 AILSLEDQTGKIDVTLF 1015 >gi|29654634|ref|NP_820326.1| DNA polymerase III alpha subunit [Coxiella burnetii RSA 493] gi|29541902|gb|AAO90840.1| DNA polymerase III alpha subunit [Coxiella burnetii RSA 493] Length = 1143 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1037 (41%), Positives = 636/1037 (61%), Gaps = 39/1037 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS YS+++ + ++ +L + + PA+A+TD NLF+ ++F ++A GI+P Sbjct: 4 SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + D+ V L G++ LI+L+SR Y+ + + V Sbjct: 64 IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + EGLI+L+G G + +A S +AE+RL + F R Y+ LQR Sbjct: 111 LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169 Query: 190 RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D+ E V++LA H +P+VATN FLS+ D+EAH+ + + ++ +RPR Sbjct: 170 R-RDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPR 228 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D Y K+ EM ++FSD+PEALENTVEIA+RCS L + LP+F + Sbjct: 229 EYSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLDEVFLPKFPVPANLKV--- 285 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ R +A GL RL + +DY +RL+ E+ VI +M F+ YFLIVADFI W Sbjct: 286 -EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAW 344 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+++IPVGPGRGSGAGS+ AY+L IT++DPL LLFERFLN +R+SMPDFDIDFC + Sbjct: 345 AKQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEG 404 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI YV +YG E VAQIIT+G++ A+A LRDVGR L +PY VD++ KL+P + Sbjct: 405 RDRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG-- 462 Query: 487 VSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L+ + R A D V L++++ KLEGL R+A HA G+VI L+ VP+ Sbjct: 463 VTLEKALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPL 522 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDLSL 600 Y + SD VTQF+ +E GL+KFDFLGL+TLT++ ++ + A+R ++ +D+ Sbjct: 523 YSEPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGT 582 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +TY LL + T +FQLES GM++ + +QPD DI+ALV+L+RPGP+ + +V Sbjct: 583 IPLDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMV 642 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + K+G++ + +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL ADVLR AMG Sbjct: 643 ETFIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMG 702 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ+ F+ G G+ + +A IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW Sbjct: 703 KKKPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAW 762 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837 +K HYP EF+AA ++ +MDN +K+ F + R N++++PP++N F V +I Y Sbjct: 763 LKAHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVY 822 Query: 838 SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKGVG A +I+ A+ F L +FCSRVD +K+NRR +E L+ +GA+D FG Sbjct: 823 GLGAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGV 882 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENE 955 SR L +SL + A+ ++ ++F E KG D + ++ N S R E Sbjct: 883 SRASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDEDYTEVPEW---NDSDRLRGE 939 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHPL ++ +G ++ N++ +A M++ + TR G R+ Sbjct: 940 KETLGLYVSGHPLQACIKEMKAVGAVPINH-LSLSEKNSVVVAGMMMGMRTITTRSGKRM 998 Query: 1016 GWVTFSEPAKEYEANFF 1032 ++ + + + F Sbjct: 999 AILSLEDQTGKIDVTLF 1015 >gi|331661558|ref|ZP_08362482.1| DNA polymerase III subunit alpha [Escherichia coli TA143] gi|331061473|gb|EGI33436.1| DNA polymerase III subunit alpha [Escherichia coli TA143] Length = 1160 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1053 (42%), Positives = 637/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F D+ E Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF---PTGDMSTE 289 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + +R K GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 290 DYLVMRAKE--GLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|291281006|ref|YP_003497824.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. CB9615] gi|209745710|gb|ACI71162.1| DNA polymerase III alpha subunit [Escherichia coli] gi|290760879|gb|ADD54840.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. CB9615] gi|320663614|gb|EFX30898.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. USDA 5905] Length = 1160 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 635/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGNM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|161830648|ref|YP_001597182.1| DNA polymerase III, alpha subunit [Coxiella burnetii RSA 331] gi|161762515|gb|ABX78157.1| DNA polymerase III, alpha subunit [Coxiella burnetii RSA 331] Length = 1143 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1037 (41%), Positives = 636/1037 (61%), Gaps = 39/1037 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS YS+++ + ++ +L + + PA+A+TD NLF+ ++F ++A GI+P Sbjct: 4 SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + D+ V L G++ LI+L+SR Y+ + + V Sbjct: 64 IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + EGLI+L+G G + +A S +AE+RL + F R Y+ LQR Sbjct: 111 LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169 Query: 190 RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D+ E V++LA H +P+VATN FLS+ D+EAH+ + + ++ +RPR Sbjct: 170 R-RDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPR 228 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D Y K+ EM ++FSD+PEALENTVEIA+RCS L + LP+F + Sbjct: 229 EYSDQQYFKSAEEMKALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKV--- 285 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ R +A GL RL + +DY +RL+ E+ VI +M F+ YFLIVADFI W Sbjct: 286 -EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAW 344 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+++IPVGPGRGSGAGS+ AY+L IT++DPL LLFERFLN +R+SMPDFDIDFC + Sbjct: 345 AKQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEG 404 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI YV +YG E VAQIIT+G++ A+A LRDVGR L +PY VD++ KL+P + Sbjct: 405 RDRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG-- 462 Query: 487 VSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L+ + R A D V L++++ KLEGL R+A HA G+VI L+ VP+ Sbjct: 463 VTLEKALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPL 522 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDLSL 600 Y + SD VTQF+ +E GL+KFDFLGL+TLT++ ++ + A+R ++ +D+ Sbjct: 523 YSEPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGT 582 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +TY LL + T +FQLES GM++ + +QPD DI+ALV+L+RPGP+ + +V Sbjct: 583 IPLDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMV 642 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + K+G++ + +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL ADVLR AMG Sbjct: 643 ETFIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMG 702 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ+ F+ G G+ + +A IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW Sbjct: 703 KKKPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAW 762 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837 +K HYP EF+AA ++ +MDN +K+ F + R N++++PP++N F V +I Y Sbjct: 763 LKAHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVY 822 Query: 838 SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKGVG A +I+ A+ F L +FCSRVD +K+NRR +E L+ +GA+D FG Sbjct: 823 GLGAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGV 882 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENE 955 SR L +SL + A+ ++ ++F E KG D + ++ N S R E Sbjct: 883 SRASLFESLTKALQAAEQRNRDMILGQHDLFGEEVKGIDEDYTEVPEW---NDSDRLRGE 939 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHPL ++ +G ++ N++ +A M++ + TR G R+ Sbjct: 940 KETLGLYVSGHPLQACIKEMKAVGAVPINH-LSLSEKNSVVVAGMMMGMRTITTRSGKRM 998 Query: 1016 GWVTFSEPAKEYEANFF 1032 ++ + + + F Sbjct: 999 AILSLEDQTGKIDVTLF 1015 >gi|153952|gb|AAA27057.1| polymerase III polymerase subunit (dnaE) [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 1160 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|26246130|ref|NP_752169.1| DNA polymerase III subunit alpha [Escherichia coli CFT073] gi|227884903|ref|ZP_04002708.1| DNA polymerase III subunit alpha [Escherichia coli 83972] gi|81846737|sp|Q8FL05|DPO3A_ECOL6 RecName: Full=DNA polymerase III subunit alpha gi|26106527|gb|AAN78713.1|AE016755_213 DNA polymerase III alpha subunit [Escherichia coli CFT073] gi|227838041|gb|EEJ48507.1| DNA polymerase III subunit alpha [Escherichia coli 83972] gi|307552034|gb|ADN44809.1| DNA polymerase III alpha subunit [Escherichia coli ABU 83972] gi|323964923|gb|EGB60389.1| DNA polymerase III [Escherichia coli M863] gi|327255163|gb|EGE66766.1| DNA polymerase III subunit alpha [Escherichia coli STEC_7v] Length = 1160 Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 635/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNIGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|212212283|ref|YP_002303219.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuG_Q212] gi|212010693|gb|ACJ18074.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuG_Q212] Length = 1143 Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1037 (41%), Positives = 635/1037 (61%), Gaps = 39/1037 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS YS+++ + ++ +L + + PA+A+TD NLF+ ++F ++A GI+P Sbjct: 4 SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + D+ V L G++ LI+L+SR Y+ + + V Sbjct: 64 IIGSELLLAEGDD-------------VFRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + EGLI+L+G G + +A S +AE+RL + F R Y+ LQR Sbjct: 111 LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169 Query: 190 RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D+ E V++LA H +P+VATN FLS+ D+EAH+ + + ++ +RPR Sbjct: 170 R-RDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPR 228 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D Y K+ EM ++FSD+PEALENTVEIA+RCS L + LP+F + Sbjct: 229 EYSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVPANLKV--- 285 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ R +A GL RL + +DY +RL+ E+ VI +M F+ YFLIVADFI W Sbjct: 286 -EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAW 344 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+++IPVGPGRGSGAGS+ AY+L IT++DPL LLFERFLN +R+SMPDFDIDFC + Sbjct: 345 AKQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEG 404 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI YV +YG E VAQIIT+G++ A+A LRDVGR L +PY VD++ KL+P + Sbjct: 405 RDRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELG-- 462 Query: 487 VSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L+ + R A D V L++++ KLEGL R+A HA G+VI L+ VP+ Sbjct: 463 VTLEKALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPL 522 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDLSL 600 Y + SD VTQF+ +E GL+KFDFLGL+TLT++ ++ + A+R ++ +D+ Sbjct: 523 YSEPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGT 582 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +TY LL + T +FQLES GM++ + +QPD DI+ALV+L+RPGP+ + +V Sbjct: 583 IPLDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMV 642 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + K+G++ + +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL ADVLR AMG Sbjct: 643 ETFIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMG 702 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ+ F+ G G+ + +A IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW Sbjct: 703 KKKPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAW 762 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837 +K HYP EF+AA ++ +MDN +K+ F + R N++++PP++N F V +I Y Sbjct: 763 LKAHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVY 822 Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKGVG +I+ A+ F L +FCSRVD +K+NRR +E L+ +GA+D FG Sbjct: 823 GLGAIKGVGEAAVMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGV 882 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENE 955 SR L +SL + A+ ++ ++F E KG D + ++ N S R E Sbjct: 883 SRASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDEDYTEVPEW---NDSDRLRGE 939 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHPL ++ +G ++ N++ +A M++ + TR G R+ Sbjct: 940 KETLGLYVSGHPLQACIKEMKAVGAVPINH-LSLSEKNSVVVAGMMMGMRTITTRSGKRM 998 Query: 1016 GWVTFSEPAKEYEANFF 1032 ++ + + + F Sbjct: 999 AILSLEDQTGKIDVTLF 1015 >gi|170021463|ref|YP_001726417.1| DNA polymerase III subunit alpha [Escherichia coli ATCC 8739] gi|169756391|gb|ACA79090.1| DNA polymerase III, alpha subunit [Escherichia coli ATCC 8739] Length = 1160 Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD++I +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQLIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|301156858|emb|CBW16334.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323128551|gb|ADX15981.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 1160 Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|82775574|ref|YP_401921.1| DNA polymerase III subunit alpha [Shigella dysenteriae Sd197] gi|81239722|gb|ABB60432.1| DNA polymerase III, alpha subunit [Shigella dysenteriae Sd197] Length = 1160 Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ +M +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEDMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVSLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|262404579|ref|ZP_06081134.1| DNA polymerase III alpha subunit [Vibrio sp. RC586] gi|262349611|gb|EEY98749.1| DNA polymerase III alpha subunit [Vibrio sp. RC586] Length = 1159 Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1050 (41%), Positives = 632/1050 (60%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + +L GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDELTKLTVLAKNNIGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + +WL E EGLI+L+GG SG I RA + Q EK L ++ F D Y+ L R Sbjct: 114 PVLDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + ++LA +ELP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEALEN+VEIA+RC+ +++ LP F E I Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNF-PTEGMAI- 288 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 289 ---EDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + D F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 885 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 941 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|320173335|gb|EFW48538.1| DNA polymerase III alpha subunit [Shigella dysenteriae CDC 74-1112] Length = 1160 Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/1053 (41%), Positives = 636/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ +KA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|16763621|ref|NP_459236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990118|ref|ZP_02571218.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|20141337|sp|P14567|DPO3A_SALTY RecName: Full=DNA polymerase III subunit alpha gi|16418736|gb|AAL19195.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205331368|gb|EDZ18132.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261245463|emb|CBG23253.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991922|gb|ACY86807.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312911201|dbj|BAJ35175.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 1160 Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|187733784|ref|YP_001878986.1| DNA polymerase III subunit alpha [Shigella boydii CDC 3083-94] gi|187430776|gb|ACD10050.1| DNA polymerase III, alpha subunit [Shigella boydii CDC 3083-94] Length = 1160 Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1055 (42%), Positives = 637/1055 (60%), Gaps = 58/1055 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + + + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVGECVAFYEEHFPDRYFLELIR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 173 TGRLDE--ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 287 -STEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K + Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D G R L+ SL + K A K ++F G ++ E +E Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQ 936 Query: 948 S---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRL 997 S V + E+ LG Y +GHP++ Y K I R +G ++ T RG I Sbjct: 937 SYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITA 996 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +VV+ + T++G+RIG T + + E F Sbjct: 997 AGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|289825701|ref|ZP_06544869.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 1063 Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|194445238|ref|YP_002039471.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403901|gb|ACF64123.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 1160 Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|53804349|ref|YP_113748.1| DNA polymerase III subunit alpha [Methylococcus capsulatus str. Bath] gi|53758110|gb|AAU92401.1| DNA polymerase III, alpha subunit [Methylococcus capsulatus str. Bath] Length = 1165 Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1041 (42%), Positives = 636/1041 (61%), Gaps = 47/1041 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++H+ YSL++G + + ++ +++ PA+A+TD NLF+ ++F + A AGI+ Sbjct: 3 PKFVHLRIHTEYSLVDGIVRIKPLVKRLSEFGMPAVAVTDQCNLFALVKFYKAAMGAGIK 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G D+ +Q+ +++ + + LLV EGY L EL+SR Y +Q + Sbjct: 63 PIAGA--DVWLQNPQDVSSPHR--------LTLLVQNQEGYLALTELISRSYQENQHQGV 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL + GLI L+GG G I A S A + + +F DR Y+ + R Sbjct: 113 PMLMPEWLADCNA-GLIALSGGRDGAIGHALLAGSGAEATRLAEYWGGMFRDRFYLEVCR 171 Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 +RY ++ V+LA +LP+VATN+ FLS +++EAH+ + + V+ RP Sbjct: 172 TGRANEERYIDA-AVELAACLDLPVVATNDVRFLSAKEFEAHEARVCIHQGRVLDDPRRP 230 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKECDD 302 R + YL++ EM+S+F+DLPEALEN+VEIARRC+ L + LP F DD Sbjct: 231 RDYSEQQYLRSEEEMLSLFADLPEALENSVEIARRCNLGLTLGKNFLPDFPVPAGMTPDD 290 Query: 303 IQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ + L+ + L VR GA Q Y RL+ EL+VI M F GYFLIVA Sbjct: 291 FFSEQSRQGLKER----LAVRPPSGAGTLEERTQRYWCRLELELSVIREMGFPGYFLIVA 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQWAK IPVGPGRGSGAGS+ AYAL ITD+DP+ F LLFERFLNP+R+SMPDFD+D Sbjct: 347 DFIQWAKSQGIPVGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVD 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RRDEVI YV KYG ++V+QIIT+GS+ AKA +RDVGR L PY VDR+ KLIP Sbjct: 407 FCMERRDEVIDYVARKYGRDKVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDRIAKLIPF 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +S +A+ D R++ D V LL+++Q LEG+ R+ HA G+VI L Sbjct: 467 ELGITLS-KALEDSEELRKSYEEDEEVRALLDLAQSLEGITRNPGKHAGGVVIAPSRLID 525 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVK----V 596 P+Y + VTQF+ +E GL+KFDFLGL+TLT++ +L D A+R V Sbjct: 526 FSPLYCEPGGGNLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALADINAKRRAAGEEPV 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +TY LL T +FQLES GM+ ++ ++PDC EDIIALV+L+RPGP+ Sbjct: 586 DINRIPLDDPKTYELLGRCATTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 645 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V Y N K+G+ K HP+++P+LK T GVI+YQEQVMQIA+ ++GY+L AD+LR Sbjct: 646 SGMVDDYINVKHGRTKAEYPHPVLEPILKPTNGVILYQEQVMQIARDMAGYTLGGADLLR 705 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ+E FI+GA++ GI +I+ +IF+L+ KFA YGFNKSH+AAYA++SY Sbjct: 706 RAMGKKKPEEMAKQREIFIAGATRQGIDPSISSHIFDLMEKFAGYGFNKSHSAAYALVSY 765 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833 QTAW+K HYP EF++A ++ +MDN +K+ + R+ + I+PP +N F V G Sbjct: 766 QTAWLKAHYPAEFMSAVLSADMDNTDKVVVLIDECREMKLSILPPDINLSEYRFTVRGRR 825 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L A+KGVG T I+ E + PF L D C R+D +K NRRVLE+++ AG D Sbjct: 826 EILYGLGAVKGVGQTAIDDILQERKNNGPFTDLLDLCRRIDLRKANRRVLEAMIRAGVFD 885 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENS 948 CF +R L +L ++ K A+ +++F A S + + Sbjct: 886 CFDRNRAALFAALPDVVKAAEQQGAMSAAGQDDLFGGFTAESPAASSAGLVATEIEPWAE 945 Query: 949 SVRFENEQRVLGFYFSGHPL-----DVYKPILRKMG-IKGYEESVATIRGNN-IRLAAMV 1001 + R E+ LG Y +GHP+ ++ + + ++G + G E RG+ + +A ++ Sbjct: 946 AERLAQEKATLGLYLTGHPITPHERELEQIVTSRLGPLMGEGEGG---RGDTRVVVAGLI 1002 Query: 1002 VSKQQKKTRKGSRIGWVTFSE 1022 V + + TR G ++G+++ + Sbjct: 1003 VDIRTRLTRSGQKMGFLSLDD 1023 >gi|170768453|ref|ZP_02902906.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627] gi|170122557|gb|EDS91488.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627] Length = 1160 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ Q + + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNV----------QSEPLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLIKRAKEGLEERLAFLFPDEEERLKRRPEYDVRLDTELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPDQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|215485345|ref|YP_002327776.1| DNA polymerase III subunit alpha [Escherichia coli O127:H6 str. E2348/69] gi|215263417|emb|CAS07737.1| DNA polymerase III, alpha subunit [Escherichia coli O127:H6 str. E2348/69] Length = 1160 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/1053 (41%), Positives = 634/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RL + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLVFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|200387887|ref|ZP_03214499.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604985|gb|EDZ03530.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 1160 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|168823099|ref|ZP_02835099.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340602|gb|EDZ27366.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084485|emb|CBY94278.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 1160 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+++GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|260853394|ref|YP_003227285.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str. 11368] gi|257752043|dbj|BAI23545.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str. 11368] Length = 1160 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/1053 (41%), Positives = 635/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ + + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|167553355|ref|ZP_02347104.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|198243100|ref|YP_002214192.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937616|gb|ACH74949.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205322170|gb|EDZ10009.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 1160 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|213865541|ref|ZP_03387660.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 1093 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|16759221|ref|NP_454838.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140771|ref|NP_804113.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163684|ref|ZP_03349394.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425957|ref|ZP_03358707.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648459|ref|ZP_03378512.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25288562|pir||AI0530 DNA polymerase III, alpha chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501512|emb|CAD08689.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29136395|gb|AAO67962.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 1160 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|168244999|ref|ZP_02669931.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449006|ref|YP_002044221.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407310|gb|ACF67529.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336213|gb|EDZ22977.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 1160 Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+++GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|146310386|ref|YP_001175460.1| DNA polymerase III subunit alpha [Enterobacter sp. 638] gi|145317262|gb|ABP59409.1| DNA polymerase III, alpha subunit [Enterobacter sp. 638] Length = 1160 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1052 (42%), Positives = 625/1052 (59%), Gaps = 52/1052 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F A AG++ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAAHGAGLK 63 Query: 69 PIIGCQLDIDMQDNL---KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIG D +Q L +MT I +L GYQ L L+SR Y G Sbjct: 64 PIIGA--DFHVQSELLGDEMTQ-----------ISVLAMNNTGYQNLTLLISRAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E+ EGL++++GG G + ++ ++ + E+ + +++ F DR Y+ Sbjct: 111 AAGPWIDRDWLAEL-NEGLLLISGGRMGDVGKSLIRGNNVLVEQCVAFYEEHFPDRFYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + V LA LP+VATN+ F++ ED++AH++ +A+ + Sbjct: 170 LIRTGRPDEENYLHAAVALAEQRGLPVVATNDVRFINAEDFDAHEIRVAIHDGFTLDDPK 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR + Y+++ EM +F+D+PEALEN+VEIARRC+ +++ LP+F E Sbjct: 230 RPRNYSTQQYMRSEDEMCELFADIPEALENSVEIARRCNVTVRLGEYFLPQFPTGEM--- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + Y +RLD EL VI +M F GYFLIV Sbjct: 287 --STEDFLVLKSKEGLEDRLEFLFPDEAERNEKRPPYDERLDIELQVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 DFCMEKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 524 DFAPLYCDESGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLEP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 584 IDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ LSGY+L Sbjct: 644 QSGMVDNFIDRKHGREAISYPDVQWQHDCLKPVLEPTYGIILYQEQVMQIAQELSGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKKPEEMAKQRGTFEDGAKKNGIDGELAIKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N F Sbjct: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINAGMYHF 823 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ Sbjct: 824 HVNDDGEIVYGIGAIKGVGEGPIEAILEARNNGGYFRELFDLCARTDTKKLNRRVLEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL K A K ++F G +D+ + S Sbjct: 884 MSGAFDRLGPHRAALMNSLGEALKAADQHAKAEAIGQADMF----GVLADEPEQIEQSYA 939 Query: 947 NSS-----VRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000 N E E+ LG Y +GHP++ Y K I R +G ++ T RG A + Sbjct: 940 NCQPWPEHTVLEGERETLGLYLTGHPINQYLKEIERYVGGNRLKDMHPTERGKMTTAAGL 999 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V++ + T++G+RIG T + + E F Sbjct: 1000 VIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|62178801|ref|YP_215218.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126434|gb|AAX64137.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713255|gb|EFZ04826.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 1160 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|207855749|ref|YP_002242400.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206707552|emb|CAR31826.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 1160 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PE+LENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPESLENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|320180909|gb|EFW55831.1| DNA polymerase III alpha subunit [Shigella boydii ATCC 9905] Length = 1160 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1053 (41%), Positives = 634/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAVNNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D VTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHSVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL N K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGNALKAAGQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|302343800|ref|YP_003808329.1| DNA polymerase III, subunit alpha [Desulfarculus baarsii DSM 2075] gi|301640413|gb|ADK85735.1| DNA polymerase III, alpha subunit [Desulfarculus baarsii DSM 2075] Length = 1152 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1041 (41%), Positives = 648/1041 (62%), Gaps = 33/1041 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +PSFVHL H++YSLL+GA+ L ++ + A A+A+TD N+F AL F Q+A AG+ Sbjct: 2 TPSFVHLHTHTAYSLLDGAIRLPELIKRTAELGMNAVAVTDHGNMFGALNFFQQAKKAGL 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC++ + D + + + T +VLL EGYQ L+ LVS + + Sbjct: 62 KPIIGCEVYVAPGD--RRDKEHRPGHETAFHLVLLCKNLEGYQNLVRLVSAGFT-EGFYY 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186 RI + L++ GLI L+ G + + A + G+ ++ L Sbjct: 119 KPRIDMELLRQ-HNGGLIALSACLGGRVPHYLLRGNIDQALAAAEDMAQTMGEGNFFIEL 177 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ + + ++A L LV TN+ FL +D+EAHD+L+ + ++ +R Sbjct: 178 QDHGLVEQKQVNPGLREIAQRLGLGLVVTNDCHFLRRQDHEAHDILLCIQTGKTIADAER 237 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 ++P+ Y K+ EM +F D PEA+ NT++IA RC + + P++ E + Sbjct: 238 MTMSPELYFKSPEEMALLFPDCPEAMANTMDIAARCDLDIPLGQLRFPQYPLPE----GQ 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKG--YHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++L A GLE RLA+ A+G + Y++RL++E++V+ +M F+GYFL+V+DF Sbjct: 294 SAEDQLTRMARRGLERRLAE-MDARGLKFDRDFYKKRLEYEIDVLLQMGFAGYFLVVSDF 352 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK IPVGPGRGS AGS+ AY++ ITD+DP+R+ L+FERFLN +R SMPD D+DFC Sbjct: 353 IVWAKSQGIPVGPGRGSAAGSLVAYSMRITDLDPIRYGLIFERFLNIERKSMPDIDVDFC 412 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI+YV +YG + VAQIITFGS+ A+A +RDVGRA+ +P+ VD++ KL+P Sbjct: 413 YNRRPEVIQYVTERYGSDHVAQIITFGSMLARAVIRDVGRAMNVPFGDVDQIAKLVPT-- 470 Query: 484 AHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 +L D + +E RLA +P V +L+ I++ LEGL RHASTHAAG+VIGD P Sbjct: 471 ----ALGMTLDKALEQEPRLAQRIKDEPQVAKLVRIAKSLEGLPRHASTHAAGVVIGDVP 526 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 L ++VP+YR + + VTQF+MK +EKAGLIKFDFLGL+TLT++ ++ + Q R D Sbjct: 527 LDRVVPLYRGSQGEC-VTQFDMKCVEKAGLIKFDFLGLRTLTVIDVAVKMIRQGRDPSFD 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I DD +Y LL+ T G+FQLESSGM++ L M+P+ ED+IALV+LYRPGP+++ Sbjct: 586 IDAIDMDDKASYELLSRGDTTGVFQLESSGMKELLTKMRPEVFEDVIALVALYRPGPLES 645 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + K+G +K+ P ++P+LKET GVI+YQEQV +IA++L+GYSL E D+LRR Sbjct: 646 GMVDDFVACKHGAKKVSYPLPQLEPVLKETYGVIVYQEQVQEIARILAGYSLGEGDILRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK+ E M Q+ERF+SGA NG+S+ A IF+L+ KFA YGFNKSH+AAY +I+YQ Sbjct: 706 AMGKKVPEVMAAQRERFVSGAKANGVSEKKAGEIFDLMEKFAGYGFNKSHSAAYGLIAYQ 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K H+P EF+AA +T E+ N +KI + R N++++PP +N +F V D+ I Sbjct: 766 TAFLKAHFPHEFMAALLTSEVSNTDKIMLHIAECRDQNLKVLPPDINHSGREFTVDDDAI 825 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + LAA+K VG I+EA +KPF+ + DFC RV+ K+NRRV+ESL+ GA D G Sbjct: 826 RFGLAAVKNVGEGAVDAIIEARQEKPFEDIFDFCERVNLAKVNRRVIESLIKCGAFDSLG 885 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFS--VENSSVRF 952 R Q + +LD+ + Q + ++R N+ A + S + T+ +E ++ + Sbjct: 886 AHRAQNMAALDDAMEQGQKLGRDRDGGQINMFAAFSEAAASARPTMPDVPPWLEADALTY 945 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E E LGFY +GHPL + ++++G+ A G ++RLA + ++K T+KG Sbjct: 946 EKE--ALGFYITGHPLGRFAEDIKRLGVLDSVTVQAAADGMSVRLAGLATEIKEKITKKG 1003 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 R+ +V + E FP Sbjct: 1004 DRMAFVRLEDLKGSLELVVFP 1024 >gi|24111619|ref|NP_706129.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 301] gi|30061741|ref|NP_835912.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T] gi|24050388|gb|AAN41836.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 301] gi|30039983|gb|AAP15717.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 2457T] gi|281599539|gb|ADA72523.1| DNA polymerase III, alpha subunit [Shigella flexneri 2002017] Length = 1160 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/1053 (41%), Positives = 635/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLALLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG I A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 999 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|238911297|ref|ZP_04655134.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 1160 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+++GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|168230540|ref|ZP_02655598.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468770|ref|ZP_03074754.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455134|gb|EDX43973.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335161|gb|EDZ21925.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 1160 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1053 (41%), Positives = 631/1053 (59%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+++GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGAALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|77164364|ref|YP_342889.1| DNA polymerase III, alpha subunit [Nitrosococcus oceani ATCC 19707] gi|254433438|ref|ZP_05046946.1| DNA polymerase III, alpha subunit subfamily, putative [Nitrosococcus oceani AFC27] gi|76882678|gb|ABA57359.1| DNA polymerase III, alpha subunit [Nitrosococcus oceani ATCC 19707] gi|207089771|gb|EDZ67042.1| DNA polymerase III, alpha subunit subfamily, putative [Nitrosococcus oceani AFC27] Length = 1158 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/1051 (42%), Positives = 633/1051 (60%), Gaps = 48/1051 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +PSFVHL++H+ YSL++ + + ++ + PA+A+TD +N+F+ ++F + A AAG+ Sbjct: 2 APSFVHLRLHTEYSLVDSLVRIRPLIQATSEAGMPAVAVTDQSNVFAMIKFYRAAQAAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG + + G V LL GY+ L L+SR Y Q + Sbjct: 62 KPIIGADIFL----------VGSGEHSRVSRFTLLCQNELGYRNLSSLLSRAYREGQYQG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ WLQ + +GLI+L+GG G + +A + A K L ++ LF R Y+ L Sbjct: 112 IPRLQWDWLQNL-NDGLIILSGGREGDVGQALLAGNDIQAGKLLERWQALFPGRYYLELH 170 Query: 188 R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R G + Y + + + P+VATN+ FL +D+EAH+ + + ++ R Sbjct: 171 RTGREGEEDYLHAAIALAL-ARDTPVVATNDVRFLRPQDFEAHEARVCIHEGRTLNDPRR 229 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR + YL+ SEM +F+DLPEALENTVEIARRC+ L + LP F E I Sbjct: 230 PRHYSEQQYLRTPSEMTELFADLPEALENTVEIARRCNLELTLGKHYLPNFPVPEDLSI- 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVA 361 E L +A GLE RL + + + Y RL EL VI +M F GYFLIVA Sbjct: 289 ---EAFLAAEARRGLEQRLVKLYPREAKRETEQPAYEARLAEELAVINQMGFPGYFLIVA 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S+PDFDID Sbjct: 346 DFIRWAKKNGIPVGPGRGSGAGSLVAYALQITDLDPLAFDLLFERFLNPERVSLPDFDID 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RRD VI YV + YG + V+QIIT+GS+ AKA +RDVGR L PY VD++ KLIP Sbjct: 406 FCMERRDRVIDYVSHYYGRDHVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDQIAKLIPF 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 D + +A+A+ R + V L+++++KLEGL R+A HA G+VI + L++ Sbjct: 466 DLKMTLD-KALAESEGLRSRYEGEEEVRFLIDLARKLEGLIRNAGKHAGGVVIAPKKLTE 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRG-VKV 596 VP Y + + VTQF+ IE GL+KFDFLGL+TLT+L +L + Q+G + Sbjct: 525 YVPYYCEQGASGVVTQFDKDDIETIGLVKFDFLGLRTLTILDWALQAINRQRTQQGEALL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL+L+P DD ++Y LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 DLALLPMDDPKSYALLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V Y NRK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L EAD+LR Sbjct: 645 SGMVDDYINRKHGRAQVNYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGEADLLR 704 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM +Q+ F +GA + + A IF+L+ KFA+YGFNKSH+AAYAVI+Y Sbjct: 705 RAMGKKKPEEMAEQRAIFTAGAKAREVDEKTATAIFDLMEKFAEYGFNKSHSAAYAVIAY 764 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833 QTA++K HYP ++AA ++ +MDN EK+K F ++ N+ ++PP VN F G+ Sbjct: 765 QTAYLKAHYPASYMAAVLSADMDNTEKVKAFVEECWAMNLDLLPPDVNASNYSFSAQGET 824 Query: 834 RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG I++ P+ L +FC R+D +K++RRVLE+L+ AGALD Sbjct: 825 AIRYGLGAIKGVGAAALEGIIKVRERHGPYQDLFEFCRRIDLRKVSRRVLEALIRAGALD 884 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENS 948 G R L SL+ A+ +N + ++F E+G + + + ++ E Sbjct: 885 SLGVERATLEASLETALALAEQHCRNASLGQNDLFGLDLVSEEGEAGNYVEVREWDKEQ- 943 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-------IRLAAMV 1001 R E+ LG Y SGHP+D YK L+++ E + R NN I +A +V Sbjct: 944 --RLALEKETLGLYLSGHPIDCYKQELKQIAPCRIVELID--RANNRQSRNQQIVIAGLV 999 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 S + K R+G R +VT + + E F Sbjct: 1000 GSVRTNKARQGGRNAFVTLEDGSARLEIKAF 1030 >gi|168264639|ref|ZP_02686612.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464204|ref|ZP_02698107.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205351568|ref|YP_002225369.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|195632694|gb|EDX51148.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205271349|emb|CAR36142.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205346919|gb|EDZ33550.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|326626595|gb|EGE32938.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 1160 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+++GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|197251652|ref|YP_002145236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215355|gb|ACH52752.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 1160 Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F +R ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPERYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|56412504|ref|YP_149579.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361439|ref|YP_002141075.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126761|gb|AAV76267.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092915|emb|CAR58344.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 1160 Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ +GLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KDGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+K+LNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKRLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|304396659|ref|ZP_07378540.1| DNA polymerase III, alpha subunit [Pantoea sp. aB] gi|304356168|gb|EFM20534.1| DNA polymerase III, alpha subunit [Pantoea sp. aB] Length = 1160 Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1058 (41%), Positives = 631/1058 (59%), Gaps = 64/1058 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G ++ K AA PAIAITD NL ++F A +AGI+ Sbjct: 4 PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHSAGIK 63 Query: 69 PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 P+IG ++ M D L + +L S+ GYQ L L+SR Y G Sbjct: 64 PVIGADFNVASELMGDELT-------------QLTVLASSNTGYQNLTLLISRAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E+ EGLI+L+GG G + R+ ++ + + L +++ F DR Y+ Sbjct: 111 VDGPIIDRDWLIEL-QEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYLE 169 Query: 186 LQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 L R D ES + V+LA +P+VATN F++ ED++AH++ +A+ + Sbjct: 170 LIRTGRQDE--ESYLHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDD 227 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RPR +P Y+++ EM +FSD+PEALEN+VEIA+RC+ +++ LP+F + Sbjct: 228 PKRPRNYSPQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + +Y +RL+ EL VI +M F GYFL Sbjct: 287 ----TTEDYLVVKSREGLEERLAFLFPDEAERAEKRPEYDERLEIELTVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP + IA + + AD V L+++++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLEKAFIA-EPQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 522 ITDFAPLYCDEHGQFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGL 581 Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPG Sbjct: 582 EPIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+ Sbjct: 642 PLQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA GI +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADMLRRAMGKKKPEEMAKQRSIFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLY 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V D I Y + AIKGVG I++A + F L D C+R D+KK+NRRV+E Sbjct: 822 PFHVNDAGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEK 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L+ SL + K A K ++F G ++ E Sbjct: 882 LIMSGAFDRLGPHRAALMSSLSDALKAADQHAKAEAIGQADMF----GVLAE----EPEQ 933 Query: 945 VENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNN 994 VE S V+ + E+ LG Y +GHP++ Y K I R +G ++ T RG Sbjct: 934 VEKSYASVTPWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKI 993 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +V++ + T++G+RIG T + + E F Sbjct: 994 TVAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|117618855|ref|YP_855729.1| DNA polymerase III, alpha subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560262|gb|ABK37210.1| DNA polymerase III, alpha subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1159 Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1048 (41%), Positives = 625/1048 (59%), Gaps = 45/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G +N I+ AA+ PA+A+TD N+ + F A G++ Sbjct: 4 PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G + D L G F + LL +GYQ + L+SR Y + Sbjct: 64 PIVGADFWV-QSDEL-----GDEQF----RLTLLAMDNDGYQNITLLISRGYQRGHVQGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E +G+I+L+GG G + + + Q+ E+ L ++ F D Y+ L R Sbjct: 114 PVIDKAWLAE-HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCLAFYQTHFPDAYYLELLR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V +A LP+VATN +FL+ +D++AH++ +A+ + K RPR Sbjct: 173 TGRPDEEVYLHMAVAIATEFALPVVATNEVVFLTADDFDAHEIRVAIHDGYTLMDKRRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL+++ EM +F+D+PEALENTVEIA+RC+ +++ LP F + Sbjct: 233 RYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVMKSKEGLEERLEFLFPDPAVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRRDEVI +V YG E V+QIITFGS+ AKA +RDVGR L Y VDR+ KLIP DP Sbjct: 408 MDRRDEVIDHVSEMYGREAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E D V L++++++LEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K VD+ Sbjct: 527 PLYCDDEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPIDDKRSFDLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N RK+GKE I H + P+L+ T G+I+YQEQVMQIAQ L+GY+L AD Sbjct: 647 MVDNFIERKHGKEAISYPDEKWQHESLQPILEPTYGIILYQEQVMQIAQTLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTH+P EF+AA MT +MDN +KI + ++ + ++PP VNT F V Sbjct: 767 VSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVN 826 Query: 832 -DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + A+KGVG I+EA D PF L DFC+RVD KKLN+RV+E L+ +G Sbjct: 827 EDGHIVYGIGAVKGVGEGPIDAILEARDRDGPFRDLFDFCNRVDIKKLNKRVMEKLILSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 A+D G R L+ +L+ + A+ K + ++F G +++I K + N Sbjct: 887 AMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMF----GVLTEEIDDVKKAFANVP 942 Query: 948 ---SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y LR+ + T R A +V++ Sbjct: 943 HWPDKVWLEGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+++G T + + + F Sbjct: 1003 RSMVTKRGNKMGIFTLDDRSGRLDVTLF 1030 >gi|311280847|ref|YP_003943078.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1] gi|308750042|gb|ADO49794.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1] Length = 1160 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1053 (41%), Positives = 629/1053 (59%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG++ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGLK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D +Q++L + + +L + GYQ L L+SR Y G Q Sbjct: 64 PIVGA--DFHVQNDLLGDEMSQ--------LTVLAANNTGYQNLTLLISRAYQRGYGAQG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + ++ ++ + E+ +++ F DR ++ L R Sbjct: 114 PWIDRDWLVEL-NEGLILLSGGRMGDVGKSLLRGNAALVEQCAAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRADEESYLHAAVKLAEERGLPVVATNDVRFIDAGDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + Y+++ EM +F+D+PEALEN+VEIA+RC+ +++ LP+F E Sbjct: 233 NYSSQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGEM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVVKSKEGLEERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K +D+ Sbjct: 527 PLYCDESGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRGTFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP+ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPITQYLKEIERYVGGVRLKDMHPTDRGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|168235011|ref|ZP_02660069.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737870|ref|YP_002113254.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713372|gb|ACF92593.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291671|gb|EDY31021.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322616055|gb|EFY12972.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620838|gb|EFY17698.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623811|gb|EFY20648.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627259|gb|EFY24050.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630566|gb|EFY27330.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638216|gb|EFY34917.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640701|gb|EFY37352.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645515|gb|EFY42042.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322657142|gb|EFY53425.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657512|gb|EFY53784.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663832|gb|EFY60032.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666665|gb|EFY62843.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672177|gb|EFY68289.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676512|gb|EFY72583.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679396|gb|EFY75441.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686277|gb|EFY82261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193457|gb|EFZ78665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197521|gb|EFZ82656.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201210|gb|EFZ86279.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209605|gb|EFZ94538.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212143|gb|EFZ96967.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216448|gb|EGA01174.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223362|gb|EGA07697.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225923|gb|EGA10143.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228536|gb|EGA12665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236851|gb|EGA20927.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239649|gb|EGA23696.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242304|gb|EGA26333.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249966|gb|EGA33862.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252396|gb|EGA36247.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255679|gb|EGA39432.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262884|gb|EGA46434.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265370|gb|EGA48866.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271843|gb|EGA55261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 1160 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|204926920|ref|ZP_03218122.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323585|gb|EDZ08780.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 1160 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLEGDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|39996502|ref|NP_952453.1| DNA polymerase III subunit alpha [Geobacter sulfurreducens PCA] gi|39983383|gb|AAR34776.1| DNA polymerase III, alpha subunit [Geobacter sulfurreducens PCA] gi|298505519|gb|ADI84242.1| DNA polymerase III, alpha subunit [Geobacter sulfurreducens KN400] Length = 1155 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1030 (41%), Positives = 628/1030 (60%), Gaps = 28/1030 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA+ L +++ K+ + PA+AITD +F A+EF K ++P Sbjct: 2 SFVHLHLHTQYSLLDGAIRLGDLVKKVKSHDMPAVAITDHGAMFGAMEFYLKCKDKDVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG ++ I +G ++LL GY+ L +LVS + + Sbjct: 62 VIGAEVYIAPGSRFVKEARGGEAGAGY-HLLLLCENMTGYRNLSKLVS-IGFKEGFYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYVNLQ 187 RI L E EGLI L+ G + A+ +VAE + + LF DR Y+ LQ Sbjct: 120 RIDKEVLAE-NAEGLICLSACLKGEV--AYLCERDRVAEAVDVARWYADLFPDRYYIELQ 176 Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + ++ + ++ ++++A LPLVATN+ +L+ ED AH+VL+ + ++ R Sbjct: 177 ENGLVEQDKANRGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDPSRM 236 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + D Y+K EM + F PEA+ NTV+IA RC PRF + Sbjct: 237 RFSVDEFYVKTPEEMAAAFHYAPEAISNTVKIAERCDLSFDFKTYHFPRFEPP----VGL 292 Query: 306 EEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L A GLE RL A+ + Q Y RL EL I +M F GYFLIVA Sbjct: 293 SLDQMLEEAARTGLESRLTAIRAKHSSMTAEQEQAYWDRLAIELACIKQMGFPGYFLIVA 352 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK + IPVGPGRGS AGS+ AYA+ ITD+DP+ ++LLFERFLNP+R+SMPD D+D Sbjct: 353 DFINWAKDHGIPVGPGRGSAAGSLVAYAIRITDLDPIPYNLLFERFLNPERISMPDIDVD 412 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVI+YV KYG ++V QIITFG++ A+A +RDVGRAL M Y +VDR+ KL+P Sbjct: 413 FCQDRREEVIQYVTEKYGRDKVCQIITFGTMSARAVIRDVGRALDMTYGEVDRIAKLVPE 472 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 ++L+ AIA + + EA ADP V LLE++ +LEGL RHASTHAAG+V+ L Sbjct: 473 --VLGITLEKAIAQEPKLNEAAEADPRVKELLEVALRLEGLARHASTHAAGVVVAPDVLE 530 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599 Q P+Y+D +S TQ++MK++EK GL+KFDFLGLK LT++ ++ + A + D++ Sbjct: 531 QFCPVYKDQKSGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIFNAVRHIRADKKPDFDIA 590 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 + DD E+Y LL T G+FQLESSGMR+ L ++P C EDIIA+ +LYRPGP+ + + Sbjct: 591 ALRDDDEESYKLLQAGNTTGVFQLESSGMRELLRKLKPSCFEDIIAVCALYRPGPLGSGM 650 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V + +RK+G++K+V P ++P+LK+T GVI+YQEQVMQIA+ L+GYSL AD+LRRAM Sbjct: 651 VDDFIDRKHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARSLAGYSLGGADLLRRAM 710 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EM KQ++ F+ GA NGI A IF+L+AKFA+YGFNKSH+AAYA+++YQTA Sbjct: 711 GKKDPAEMAKQRDIFLEGAKNNGIDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQTA 770 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYPVEF+AA +T +M N +K+ K D R+ I+++PP +N + F+V N I + Sbjct: 771 YLKAHYPVEFMAALLTEDMANTDKVVKNIADCREMGIEVLPPDINASDLSFRVLGNSIRF 830 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L A+K VG + I+EA D PF + +FC RVD +K+N+RV+ESL+ GA D G Sbjct: 831 GLGAVKNVGESAIEAIIEARGDGPFKDIFEFCERVDLRKVNKRVVESLIKCGAFDSTGGR 890 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVENSSVRF 952 R QL +L++ Q +++ + + ++F E+ G K+ L + Sbjct: 891 RSQLTAALEDAMSLGQKIQQEKESAQVSLFGAEEIVRTNGNGKGKVQLPDLPEWDDKFLL 950 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LGF+ +GHPL ++ +R+ + +++ +V + ++ T+KG Sbjct: 951 AQEKEALGFFITGHPLGRHEKDIRRFTTADTATLEERADKSEVKICGIVATMKELMTKKG 1010 Query: 1013 SRIGWVTFSE 1022 R+ + T + Sbjct: 1011 DRMAFATLED 1020 >gi|308185755|ref|YP_003929886.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1] gi|308056265|gb|ADO08437.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1] Length = 1160 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1058 (41%), Positives = 631/1058 (59%), Gaps = 64/1058 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G ++ K AA PAIAITD NL ++F A +AGI+ Sbjct: 4 PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHSAGIK 63 Query: 69 PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 P+IG ++ M D L + +L S+ GYQ L L+SR Y G Sbjct: 64 PVIGADFNVASELMGDELT-------------QLTVLASSDTGYQNLTLLISRAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E+ EGLI+L+GG G + R+ ++ + + L +++ F DR Y+ Sbjct: 111 VDGPIIDRDWLIEL-QEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYLE 169 Query: 186 LQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 L R D ES + V+LA +P+VATN F++ ED++AH++ +A+ + Sbjct: 170 LIRTGRQDE--ESYLHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDD 227 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RPR +P Y+++ EM +FSD+PEALEN+VEIA+RC+ +++ LP+F + Sbjct: 228 PKRPRNYSPQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RL + +Y +RL+ ELNVI +M F GYFL Sbjct: 287 ----TTEDYLVVKSREGLEERLVFLFPDEAERAEKRPEYDERLEIELNVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP + IA + + AD V L+++++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLEKAFIA-EPQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTK 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 522 ITDFAPLYCDEHGQFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKEGL 581 Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPG Sbjct: 582 EPIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+ Sbjct: 642 PLQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA GI +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADMLRRAMGKKKPEEMAKQRSVFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLY 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG I++A + F L D C+R D+KK+NRRV+E Sbjct: 822 PFHVNEAGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEK 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L+ +L + K A K ++F G ++ E Sbjct: 882 LIMSGAFDRLGPHRAALMSALSDALKAADQHAKAEAIGQADMF----GVLAE----EPEQ 933 Query: 945 VENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNN 994 VE S V+ + E+ LG Y +GHP++ Y K I R +G ++ T RG Sbjct: 934 VEKSYASVTPWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKI 993 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +V++ + T++G+RIG T + + E F Sbjct: 994 TVAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|261211363|ref|ZP_05925651.1| DNA polymerase III alpha subunit [Vibrio sp. RC341] gi|260839318|gb|EEX65944.1| DNA polymerase III alpha subunit [Vibrio sp. RC341] Length = 1159 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1050 (41%), Positives = 631/1050 (60%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ K+AA PA+A+TD NL ++F A GI+ Sbjct: 4 PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + LL GY+ L L+S+ YL + Sbjct: 64 PIIGADFML----------QSEEFGDELTKLTLLAKNNIGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + +WL + EGLI+L+GG SG + RA + Q EK L ++ F D Y+ L R Sbjct: 114 PVLDKAWLID-HAEGLIVLSGGKSGEVGRALLKGNQQQVEKCLEFYQTHFADHFYLELIR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + + +A +ELP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALDVAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL+ +EM +F+D+PEALEN+VEIA+RC+ +++ LP F E I Sbjct: 231 PKNYSPKQYLRTEAEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNF-PTEGMAI- 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL AQ +Y +RL EL+VI +M F GYFLIV Sbjct: 289 ---EDFLVMKSREGLEDRLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + D F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 885 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 941 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|154271|gb|AAA27191.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 1160 Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1053 (41%), Positives = 630/1053 (59%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ N + ++ + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFNVH---NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L R Sbjct: 114 PIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ FC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVSFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP E +AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEIMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I++A + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG + Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTASG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|327484762|gb|AEA79169.1| DNA polymerase III alpha subunit [Vibrio cholerae LMA3894-4] Length = 1157 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1050 (41%), Positives = 629/1050 (59%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + LL GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R Sbjct: 114 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + + +A ++LP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ LP F Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 287 -AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + D F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 885 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 941 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|77918826|ref|YP_356641.1| DNA polymerase III subunit alpha [Pelobacter carbinolicus DSM 2380] gi|77544909|gb|ABA88471.1| DNA polymerase III, alpha subunit [Pelobacter carbinolicus DSM 2380] Length = 1156 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/1051 (42%), Positives = 638/1051 (60%), Gaps = 41/1051 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +EK P FVHL VH+ YSLL+GA+ + +++ + PA+AITD N+F A+EF K Sbjct: 1 MEKVP-FVHLHVHTQYSLLDGAIRIGDLIKRAEDCGMPAVAITDHGNMFGAVEFFSKLKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN--QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 + ++PI+GC++ + + +N G + +VLL EGYQ L +VS Y Sbjct: 60 SSVKPIVGCEVYVAPGSRFEKSNVRGGDKAY----HLVLLCQDIEGYQNLCRMVSAGYR- 114 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181 + RI L++ +GLI LT G + + A R +F + R Sbjct: 115 EGFYYKPRIDWDLLRKY-NKGLIALTACLGGELPSLLMQGKHEQAVARARDMAAIFDENR 173 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 LY+ LQ + ++ ++ ++ + LPLVATN+ +L+ E AH+VL+ V + Sbjct: 174 LYLELQENFIAEQKPVNEGLIAIGKELGLPLVATNDCHYLTRESAAAHEVLLCVQTGKTM 233 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFI 296 DR R + D YLK EM +F PEAL NTV IA RC+ L H P + Sbjct: 234 DDPDRFRFSNDEFYLKTPEEMAELFHYAPEALANTVAIADRCNLELDFDTYHFPQYEKPA 293 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQD---YRQRLDFELNVIARMK 352 EK D + EE+ R GLE RLA+ + + A++ Y RL EL I M Sbjct: 294 EKTLDQVL--EEDSWR-----GLEERLAEIRKVRPDFSAEEEKVYHDRLVRELECINSMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFI WAK N IPVGPGRGS AGS+ AYA+ ITDIDP+ ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFINWAKDNGIPVGPGRGSAAGSLVAYAIRITDIDPIPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D+DFC R++VI YV+ KYG E VAQIITFG++ AK +RDVGRAL M Y V Sbjct: 407 VSMPDIDVDFCIYGREDVIEYVRQKYGEENVAQIITFGTMMAKGVIRDVGRALNMSYGDV 466 Query: 473 DRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 DR+ KL+P ++L +A+ + R +E + DP V +LL+I+ LEGL RHASTHAAG Sbjct: 467 DRIAKLVPT--VLNITLKEALEQEPRLQELQDKDPQVKQLLDIALTLEGLTRHASTHAAG 524 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +V+ +PLS+ +P+Y D +S VTQF MK++E+ GL+KFDFLGLKTLT++ ++ + + Sbjct: 525 VVVTPKPLSEYLPLYTDPKSGGQVTQFPMKYVEQIGLVKFDFLGLKTLTVIANAVRLIHE 584 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + DL L+ DD +TY LL+ T G+FQLESSGM++ L ++P C EDIIA+ +LY Sbjct: 585 GNDPEFDLKLVGDDDPDTYRLLSAGETTGVFQLESSGMKELLVKLKPSCFEDIIAVCALY 644 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+ + +V + RK+GK++I P ++P+LK+T GVI+YQEQVM IAQ+L+ YSL Sbjct: 645 RPGPLGSGMVDDFILRKHGKKEITYDFPQLEPILKDTYGVIVYQEQVMLIAQVLARYSLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQKE F+SGA +N + A +F+L+ KFA YGFNKSH+AA Sbjct: 705 GADLLRRAMGKKKPEEMAKQKEIFMSGARENELDVKKAEAVFDLMEKFAAYGFNKSHSAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++Y TA++KTHYPVEF+AA +T +M+N EK+ K + R I+++PP +N F Sbjct: 765 YALVAYHTAYLKTHYPVEFMAALLTEDMENTEKVIKNINEVRSMGIEVLPPDINASSSSF 824 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V DN I + L A+KGVG I+E ++PF +L +FC RVD +K+N++V+E+L+ Sbjct: 825 TVHDNAIRFGLGAVKGVGGAAIDAILEVRQEQPFTTLHEFCERVDLRKVNKKVVEALIKC 884 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGT-FSDKITLEK 942 GA D G R Q L L+ + Q V++ + ++F ++GT + +E+ Sbjct: 885 GAFDSLGGHRAQYLVVLEEAMEIGQKVQREKAEGQASLFGTDEIVSQRGTSYGVLPEMEE 944 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 +S V+ E+ LGFY +GHPL Y+ ++R+ + +RL MV Sbjct: 945 WS---DKVKLGFEKESLGFYITGHPLGRYQEVIRRFANCTTADVAERADKEEVRLCGMVS 1001 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + T+KG R+ +VT + + E FP Sbjct: 1002 GIKDLVTKKGERMAFVTLEDLSGFVEMVVFP 1032 >gi|113970961|ref|YP_734754.1| DNA polymerase III subunit alpha [Shewanella sp. MR-4] gi|113885645|gb|ABI39697.1| DNA polymerase III, alpha subunit [Shewanella sp. MR-4] Length = 1158 Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1050 (41%), Positives = 620/1050 (59%), Gaps = 50/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL ++ A A+A+TD NNL ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121 PIIG D MQ VP ++ ++ +GYQ L +++S+ YL Sbjct: 64 PIIGA--DFWMQ---------------VPGFDDEFCALTIIAMNNDGYQNLTQIISQAYL 106 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 V I WL EG+++L+GG G + +A ++ E +++ F R Sbjct: 107 RGHVAGRVVIDQEWLVTY-NEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGR 165 Query: 182 LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R D R + V LA +P+VATN +FL ED+EAH++ +A+ + Sbjct: 166 YYLELLRTGRTDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTL 225 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + RP+ + YL++ EM +F+D+P ALENTVEIA+RC+ ++++ LP F + Sbjct: 226 ADPRRPKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGD 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E+ L + + GLE RL + +Y +RLD EL VI +M F GY Sbjct: 286 M-----SIEDYLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGY 340 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP Sbjct: 341 FLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 401 DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP +P ++ +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI Sbjct: 461 KLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAP 519 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + VK Sbjct: 520 TKITDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKN 579 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+R Sbjct: 580 GRPPVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSG Sbjct: 640 PGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSG 699 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKS Sbjct: 700 YTLGGADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKS 759 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + I+PP VN Sbjct: 760 HSAAYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKG 819 Query: 825 CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E Sbjct: 820 LFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIE 879 Query: 884 SLVFAGALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 L+ AGALD G R ++ +L + I Q + +H+ K + Sbjct: 880 KLICAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVE 939 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV Sbjct: 940 CTPWPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVV 999 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++GS++G +T + + E F Sbjct: 1000 ATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|271499510|ref|YP_003332535.1| DNA polymerase III subunit alpha [Dickeya dadantii Ech586] gi|270343065|gb|ACZ75830.1| DNA polymerase III, alpha subunit [Dickeya dadantii Ech586] Length = 1160 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1051 (41%), Positives = 630/1051 (59%), Gaps = 50/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F A +AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L EGYQ L L+SR Y G Sbjct: 64 PIIGADFYL----------QSEELGDELAHLTVLAMNNEGYQNLTLLISRAYQRGYGADG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E G+++L+GG G I + + + E+ + +++ F R Y+ L R Sbjct: 114 PTIDREWLVE-HQAGILLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELTR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + ++LA H LP+VATN+ F+S++D+EAH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAIKLATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEDEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L A GLE RLA + AQ +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVMCAKKGLEERLAFLFPDEEVRAQRRPEYDERLDIELGVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K VD+ Sbjct: 527 PLYCDQEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGLEPVDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA K G+ +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +KI + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I++A + F L D C+R D KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIDARNNGGYFRDLFDLCARTDIKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D G R L+ SL + K A K ++F G ++ T E+ S+ Sbjct: 887 AFDRLGPHRAALMNSLADAMKSADQHAKAEAIGQADMF----GVLAE--TPEQVEQSYST 940 Query: 950 VR-------FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 V + E+ LG Y +GHP++ Y K I R G ++ T RG +V Sbjct: 941 VPPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLV 1000 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + T++G+RIG T + + E F Sbjct: 1001 LAARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031 >gi|117921241|ref|YP_870433.1| DNA polymerase III subunit alpha [Shewanella sp. ANA-3] gi|117613573|gb|ABK49027.1| DNA polymerase III, alpha subunit [Shewanella sp. ANA-3] Length = 1158 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1050 (41%), Positives = 621/1050 (59%), Gaps = 50/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL ++ A A+A+TD NNL ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121 PIIG D MQ VP ++ ++ +GYQ L +++S+ YL Sbjct: 64 PIIGA--DFWMQ---------------VPGFDGEFCALTIIAMNNDGYQNLTQIISQAYL 106 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + V I WL EG+++L+GG G + +A ++ E +++ F R Sbjct: 107 RGHVQGRVVIDQEWLVTY-NEGILLLSGGREGDVGKALLKGNNTQVESLCEFYQQHFEGR 165 Query: 182 LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R D R + V LA +P+VATN +FL ED+E+H++ +A+ + Sbjct: 166 YYLELLRTGRTDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFESHEIRVAIHDGFTL 225 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + RP+ + YL++ EM +F+D+P ALENTVEIA+RC+ ++++ LP F + Sbjct: 226 ADPRRPKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGD 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E+ L + + GLE RL + +Y +RLD EL VI +M F GY Sbjct: 286 M-----SIEDYLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGY 340 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP Sbjct: 341 FLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 401 DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP +P ++ +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI Sbjct: 461 KLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAP 519 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + VK Sbjct: 520 TKITDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKN 579 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+R Sbjct: 580 GRPPVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSG Sbjct: 640 PGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSG 699 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKS Sbjct: 700 YTLGGADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKS 759 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + I+PP VN Sbjct: 760 HSAAYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKG 819 Query: 825 CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E Sbjct: 820 LFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIE 879 Query: 884 SLVFAGALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 L+ AGALD G R ++ +L + I Q + +H+ K + Sbjct: 880 KLICAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVE 939 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV Sbjct: 940 CTPWPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVV 999 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++GS++G +T + + E F Sbjct: 1000 ATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|254508656|ref|ZP_05120771.1| putative DNA polymerase IIIalpha subunit subfamily [Vibrio parahaemolyticus 16] gi|219548413|gb|EED25423.1| putative DNA polymerase IIIalpha subunit subfamily [Vibrio parahaemolyticus 16] Length = 1159 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1052 (41%), Positives = 626/1052 (59%), Gaps = 53/1052 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A GI+ Sbjct: 4 PKFVHLRVHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGCGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ K + +L + GY+ L L+S+ YL + Sbjct: 64 PIIGA--DFAMQSAAFGDELTK--------LTVLAADNTGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ +EGLI+L+GG SG I +A + + A++ ++ F DR Y+ L R Sbjct: 114 PVIDKEWLVEL-SEGLILLSGGKSGEIGKALLKGNQKTAQECAEFYQTHFADRFYLELTR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + ++ A ELP+VATN+ +FL E ++AH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALEFAEQFELPVVATNDVVFLDETLFDAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + Sbjct: 231 PKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 EE L K+ GLE RL + +Y +RL EL VI M F GYFLIV Sbjct: 286 MEETEFLVMKSEEGLEERLEFLFPDPKVRAERRPEYDERLRIELEVINNMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + E AD V L+++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLE-KAFKAEPALPELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAKEGKAPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD +++LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 AIESIPLDDQASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 + +V N +RK+G+E I S+ ++DP T G+I+YQEQVMQIAQ+LSGY Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLSGY 700 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH Sbjct: 701 TLGGADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSH 760 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 761 SAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECLRMKLKVLPPDINSGL 820 Query: 826 VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D I Y + AIKGVG I+E+ + D F L DFC+R+D KK+N+RV+E Sbjct: 821 YRFNVDEDGAIVYGIGAIKGVGEGPIEAILESRNRDGHFKDLFDFCARIDLKKVNKRVIE 880 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITL 940 L++AGALD G R ++ SLD+ K A + ++F +K T Sbjct: 881 KLIYAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVENKYT- 939 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 K + V E E+ LG Y +GHP++ Y L K +++ T R ++ ++ + Sbjct: 940 -KVAPWPEKVWLEGERTTLGLYLTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVSGL 998 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V++ + T++G+RIG +T + + E F Sbjct: 999 VIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|114048185|ref|YP_738735.1| DNA polymerase III subunit alpha [Shewanella sp. MR-7] gi|113889627|gb|ABI43678.1| DNA polymerase III, alpha subunit [Shewanella sp. MR-7] Length = 1158 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1050 (41%), Positives = 620/1050 (59%), Gaps = 50/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL ++ A A+A+TD NNL ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121 PIIG D MQ VP ++ ++ +GYQ L +++S+ YL Sbjct: 64 PIIGA--DFWMQ---------------VPGFDDEFCALTIIAMNNDGYQNLTQIISQAYL 106 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 V I WL EG+++L+GG G + +A ++ E +++ F R Sbjct: 107 RGHVAGRVVIDQEWLVTY-NEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGR 165 Query: 182 LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R D R + V LA +P+VATN +FL ED+EAH++ +A+ + Sbjct: 166 YYLELLRTGRPDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTL 225 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + RP+ + YL++ EM +F+D+P ALENTVEIA+RC+ ++++ LP F + Sbjct: 226 ADPRRPKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGD 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E+ L + + GLE RL + +Y +RLD EL VI +M F GY Sbjct: 286 M-----SIEDFLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGY 340 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP Sbjct: 341 FLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 401 DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP +P ++ +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI Sbjct: 461 KLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAP 519 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + VK Sbjct: 520 TKITDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKN 579 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+R Sbjct: 580 GRPPVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSG Sbjct: 640 PGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSG 699 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKS Sbjct: 700 YTLGGADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKS 759 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + I+PP VN Sbjct: 760 HSAAYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKG 819 Query: 825 CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E Sbjct: 820 LFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIE 879 Query: 884 SLVFAGALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 L+ AGALD G R ++ +L + I Q + +H+ K + Sbjct: 880 KLICAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVE 939 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV Sbjct: 940 CTPWPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVV 999 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++GS++G +T + + E F Sbjct: 1000 ATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|295098673|emb|CBK87763.1| DNA polymerase III, alpha subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 1160 Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1053 (41%), Positives = 632/1053 (60%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F A AG++ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGLK 63 Query: 69 PIIGCQLDIDMQDNL---KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PI+G D +Q L +MT I +L GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFHVQSELLGDEMTQ-----------ISVLAMNNTGYQNLTLLISKAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E+ EGL++++GG G + + ++ + ++ + +++ F DR Y+ Sbjct: 111 ALGPWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNNALVDQCVSFYEEYFPDRYYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + V LA LP+VATN+ FL D++AH++ +A+ + Sbjct: 170 LIRTGRADEESYLHAAVALAEARGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPK 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR + Y+++ EM +FSD+PEALEN+VEIA+RC+ +++ LP+F + Sbjct: 230 RPRNYSSQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM--- 286 Query: 304 QKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL A+ K + Y +RLD EL VI +M F GYFLI Sbjct: 287 --TTEDFLVMKSKEGLEERLEFLFPDEAVRKEKRPE-YDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 523 TDFAPLYCDEAGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEP 582 Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + +GA D G R L+ SL + K A K ++F G +++ + S Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAEEPEQIEQSY 938 Query: 946 EN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 N V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 SNCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGHRLKDMHPTERGKITTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|145300046|ref|YP_001142887.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142852818|gb|ABO91139.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 1161 Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1048 (41%), Positives = 625/1048 (59%), Gaps = 45/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G +N I+ AA+ PA+A+TD N+ + F A GI+ Sbjct: 6 PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGIK 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G + + + G F + LL +GYQ + L+SR Y + Sbjct: 66 PIVGADFWV------QSSELGDEQF----RLTLLAMDNDGYQNITLLISRGYQRGHVQGR 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + +G+I+L+GG G + + + Q+ E L ++ F D Y+ L R Sbjct: 116 PVIDKEWLTD-HAKGVIVLSGGREGDVGKFLLKGNRQMTESCLAFYQTHFPDAYYLELLR 174 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V +A ELP+VATN +FL+ ED++AH++ +A+ + K RPR Sbjct: 175 TGRPDEEVYLHMAVAIATEFELPVVATNEVVFLNAEDFDAHEIRVAIHDGYTLMDKRRPR 234 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL+++ EM +F+D+PEALENTVEIA+RC+ +++ LP F + Sbjct: 235 RYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 289 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 290 TEDFLVAKSKEGLEERLAFLFPDPAVRAVKRGEYDERLEIELKVINQMGFPGYFLIVMEF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 350 IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRRDEVI +V + YG + V+QIITFGS+ AKA +RDVGR L Y VDR+ KLIP DP Sbjct: 410 MDRRDEVIEHVSDMYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDP 469 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E D V L++++++LEG+ R+A HA G+VI ++ Sbjct: 470 GMTLA-KAFEAELKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFA 528 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K VD+ Sbjct: 529 PLYCDDSGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP D +++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 589 AAIPIHDKKSFDLLQRFETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 648 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N RK+GKE I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 649 MVDNFIERKHGKEAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM KQ+ F GA KNGI +AV IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 709 MLRRAMGKKNPAEMAKQRSGFEEGAVKNGIDGELAVKIFDLVEKFAGYGFNKSHSAAYAL 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTH+P EF+AA MT +MDN +KI + ++ + ++PP VNT F V Sbjct: 769 VSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVN 828 Query: 832 -DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + A+KGVG I+ A D PF L DFC+RVD KK+N+RV+E L+ +G Sbjct: 829 EDGHIVYGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKINKRVMEKLILSG 888 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 A+D G R L+ +L+ + A+ K + ++F G + +I K + N Sbjct: 889 AMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMF----GVLTQEIDDVKKAFANVP 944 Query: 948 ---SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y LR+ + T R A +V++ Sbjct: 945 HWPDKVWLEGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAA 1004 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+++G T + + + F Sbjct: 1005 RSMVTKRGNKMGIFTLDDRSGRLDVTLF 1032 >gi|330830740|ref|YP_004393692.1| DNA polymerase III subunit alpha [Aeromonas veronii B565] gi|328805876|gb|AEB51075.1| DNA polymerase III, alpha subunit [Aeromonas veronii B565] Length = 1159 Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1048 (41%), Positives = 626/1048 (59%), Gaps = 45/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G +N I+ AA+ PA+A+TD N+ + F A GI+ Sbjct: 4 PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G + D L G F + LL +GYQ + L+SR Y + Sbjct: 64 PIVGADFWV-QSDEL-----GDEQF----RLTLLAMDNDGYQNITLLISRGYQRGHVQGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I SWL E +G+I+L+GG G + + + Q+ E+ + ++ F D Y+ L R Sbjct: 114 PVIDKSWLAE-HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCVAFYQTHFPDAYYLELLR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V +A LP+VATN +FL+ +D++AH++ +A+ + K RPR Sbjct: 173 TGRPDEEVYLHMAVAIATEFALPVVATNEVVFLNADDFDAHEIRVAIHDGYTLMDKRRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL+++ EM +F+D+PEALENTVEIA+RC+ +++ LP F + Sbjct: 233 RYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVAKSKEGLEERLEFLFPDPQVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRRDEVI +V + YG + V+QIITFGS+ AKA +RDVGR L Y VDR+ KLIP DP Sbjct: 408 MDRRDEVIEHVSDMYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E D V L++++++LEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K VD+ Sbjct: 527 PLYCDDEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ LL T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPIDDKKSFDLLQRYETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G E I H + P+L+ T G+I+YQEQVMQIAQ L+GY+L AD Sbjct: 647 MVDNFIDRKHGNEAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTH+P EF+AA MT +MDN +KI + ++ + ++PP VNT F V Sbjct: 767 VSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVN 826 Query: 832 -DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + A+KGVG I+ A D PF L DFC+RVD KKLN+RV+E L+ +G Sbjct: 827 EDGHIVYGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKLNKRVMEKLILSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 A+D G R L+ +L+ + A+ K + ++F G +++I K + N Sbjct: 887 AMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMF----GVLTEEIDDVKKAFANVP 942 Query: 948 ---SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y LR+ + T R A +V++ Sbjct: 943 HWPDKVWLEGERETLGLYLTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+++G T + + + F Sbjct: 1003 RSMVTKRGNKMGIFTLDDRSGRLDVTLF 1030 >gi|95930421|ref|ZP_01313157.1| DNA polymerase III, alpha subunit [Desulfuromonas acetoxidans DSM 684] gi|95133461|gb|EAT15124.1| DNA polymerase III, alpha subunit [Desulfuromonas acetoxidans DSM 684] Length = 1158 Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1039 (41%), Positives = 629/1039 (60%), Gaps = 24/1039 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +HS YSLL+GA+ + N+++++ + PA+AITD N+F A+EF KA AAG++P Sbjct: 5 NFVHLHLHSQYSLLDGAIKIPNLIERVKEYKMPAVAITDHGNMFGAMEFYTKATAAGVKP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + +N + + +VLL GY+ L LVS Y + Sbjct: 65 IIGCEVYVAPGRRTEKSNARGSSEASY-HLVLLCQNKIGYRNLCYLVSTAYR-EGFYYKP 122 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 RI L E EGLI ++ G I A R ++F D R Y+ LQ Sbjct: 123 RIDWDLLTEY-NEGLIAMSACLGGEIPTLINLGRPDDALARAEQMAQVFDDDRFYLELQE 181 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ + ++ ++ LPLVATN+ +L ED AH+VL+ + + + R R Sbjct: 182 NGIPEQATANTGLIDISGKLGLPLVATNDCHYLRREDAYAHEVLLCIQTGKTMDDEKRMR 241 Query: 248 VTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D Y++ EM +FS +P+AL+NTVEIA+RC+ P++ EK D K Sbjct: 242 FANDGFYVRTPDEMRELFSHVPQALDNTVEIAQRCNLDFDFDTYHFPQY-EKPAD---KT 297 Query: 307 EENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L A GLE RL + Q Y+ RL+ EL I M F GYF+IVAD Sbjct: 298 LDEVLEEMARDGLEDRLKMIRSLNPDLSAEEEQVYQDRLERELKTIRDMGFPGYFIIVAD 357 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK ++IPVGPGRGS AGS+ A+A+ ITDIDP+ + LLFERFLNP+R+SMPD D+DF Sbjct: 358 FINWAKDHDIPVGPGRGSAAGSLVAFAIRITDIDPIPYDLLFERFLNPERISMPDIDVDF 417 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C R++VI+YVQ +YG VAQIITFG+L AK ++DVGRAL MPY +VD+L KL+P Sbjct: 418 CIYGREKVIQYVQEEYGAPNVAQIITFGTLGAKGVIKDVGRALNMPYGEVDKLSKLVP-- 475 Query: 483 PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 ++L+ A+ + R +E +D V LL ++ LEGL RHASTHAAG+V+ PL+ Sbjct: 476 AVLNITLKDALQQEPRIQEMAKSDVRVKELLNVALSLEGLTRHASTHAAGVVVTPNPLTD 535 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600 +P+Y D +S VTQF M ++EK GL+KFDFLGLKTLT++ +L + + + DL++ Sbjct: 536 YLPLYTDQKSGGQVTQFPMSYVEKIGLVKFDFLGLKTLTVIDNALRLIHSAKNPDFDLNV 595 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I DD TY LL+ T G+FQLESSGM++ L ++P+C EDIIA +LYRPGP+ + +V Sbjct: 596 IGDDDEATYELLSHGDTTGVFQLESSGMKELLVKLKPNCFEDIIAACALYRPGPLGSGMV 655 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G++ IV P ++P+LK+T GVI+YQEQVM IAQ L+ YSL AD+LRRAMG Sbjct: 656 DDFILRKHGQKDIVYDFPQLEPILKDTYGVIVYQEQVMLIAQTLANYSLGGADLLRRAMG 715 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM+KQK F+ GA +N + A +F+L+A FA YGFNKSH+AAYA+++Y TA+ Sbjct: 716 KKKPEEMEKQKVLFLKGAKENNLDPKKAEAVFDLMAMFAAYGFNKSHSAAYALVAYHTAY 775 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYPVEF+AA +T +M+N +K+ K + R I+++PP +N F V +N + + Sbjct: 776 LKAHYPVEFMAALLTEDMENTDKVIKNIAEVRSMGIEVLPPDINASIRSFTVHENAMRFG 835 Query: 839 LAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L A+KGVGT I+ D P+DSL DFC RVD K+N++V+ESL+ GA D G Sbjct: 836 LGAVKGVGTAALDSIIHVREVDGPYDSLNDFCERVDLGKVNKKVVESLIKCGAFDSLGGK 895 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFEN 954 R Q + +L++ + Q V++ + E++F E+ + S L + + +R N Sbjct: 896 RAQYMDALESAMEIGQQVQREKQQGQESLFGMEEMVTRSGSSYGELPDVAEWDDKLRLNN 955 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LGFY +GHPL Y +++ V +R+ +V K++ T+KG R Sbjct: 956 EKEALGFYITGHPLSRYAEDIKRFATCDLSGLVERNDKEEVRVCGIVSGKKELVTKKGDR 1015 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++T + E FP Sbjct: 1016 MAFITLEDLTGSLEVVVFP 1034 >gi|296101353|ref|YP_003611499.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055812|gb|ADF60550.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1160 Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/1056 (41%), Positives = 630/1056 (59%), Gaps = 60/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F A AG++ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGMK 63 Query: 69 PIIGCQLDIDMQDNL---KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PI+G D +Q L +MT I +L GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFHVQSELLGDEMTQ-----------ISVLAMNNTGYQNLTLLISKAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E+ EGL++++GG G + + +S + ++ + +++ F DR Y+ Sbjct: 111 ALGPWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + V LA LP+VATN+ FL D++AH++ +A+ + Sbjct: 170 LIRTGRPDEESYLHAAVALAEARGLPVVATNDVRFLEAGDFDAHEIRVAIHDGFTLDDPK 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR + Y+++ EM +FSD+PEALEN+VEIA+RC+ +++ LP+F E Sbjct: 230 RPRNYSAQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGEM--- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLIV Sbjct: 287 --TTEDFLVMKSKEGLEERLEFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 524 DFAPLYCDEAGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ Sbjct: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F G ++ E +E Sbjct: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIE 935 Query: 947 NS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996 S V + E+ LG Y +GHP++ Y K I R +G ++ T RG Sbjct: 936 QSYASCLPWPEQVVLDGERETLGLYLTGHPINQYIKEIERYVGGYRLKDMHPTERGKITT 995 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +V++ + T++G+RIG T + + E F Sbjct: 996 AAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|206579408|ref|YP_002240328.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342] gi|288937034|ref|YP_003441093.1| DNA polymerase III subunit alpha [Klebsiella variicola At-22] gi|290512455|ref|ZP_06551821.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55] gi|206568466|gb|ACI10242.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342] gi|288891743|gb|ADC60061.1| DNA polymerase III, alpha subunit [Klebsiella variicola At-22] gi|289774796|gb|EFD82798.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55] Length = 1160 Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1053 (41%), Positives = 628/1053 (59%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D +Q +L + +L + GYQ L L+SR Y G Sbjct: 64 PIVGA--DFHVQCDLLGDE--------FTELTVLAANNTGYQNLTLLISRAYQRGYGALG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+GG G + + + + E+ + +++ F DR ++ L R Sbjct: 114 PWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA LP+VATN+ FL D++AH++ +A+ + RPR Sbjct: 173 TGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEALEN+VEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + +Y QRLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEGPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|292489212|ref|YP_003532099.1| DNA polymerase III subunit alpha [Erwinia amylovora CFBP1430] gi|292898554|ref|YP_003537923.1| DNA polymerase III subunit alpha [Erwinia amylovora ATCC 49946] gi|291198402|emb|CBJ45509.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC 49946] gi|291554646|emb|CBA22332.1| DNA polymerase III alpha subunit [Erwinia amylovora CFBP1430] Length = 1160 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1052 (41%), Positives = 624/1052 (59%), Gaps = 52/1052 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + ++ A+ PAI ITD NL ++F A G++ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKTSPLVKYAASIGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63 Query: 69 PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIG ++ M D L I +L + EGYQ L L+SR Y G Sbjct: 64 PIIGADFNVSSEAMGDELT-------------QITVLAADNEGYQNLTLLISRAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E +GLI+L+GG G + + + + L +++ F DR Y+ Sbjct: 111 PAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHTQVRECLSFYQQHFPDRYYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + V+LA +P+VATN FL+E D++AH++ +A+ + Sbjct: 170 LIRTGRPDEEAYLHAAVELAVAQGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPK 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR +P YL++ EM +FSD+PEALEN+VEIARRC+ +++ LP+F E Sbjct: 230 RPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM--- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L ++ GLE RL + DY QRLD ELNVI +M F GYFLIV Sbjct: 287 --TTEDFLVVESKKGLEERLEFLFPDEKVRAERRADYDQRLDIELNVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 DFCMEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + K Sbjct: 524 DFAPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ Sbjct: 584 IDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 644 QSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EM +Q+ F GA GI +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKNPVEMARQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ F Sbjct: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGLYQF 823 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D I Y + AIKGVG I+EA + F L D C+R D+KK+NRR+LE L+ Sbjct: 824 HVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+ +L + K A K ++F G ++ + S Sbjct: 884 MSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYS 939 Query: 947 N-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + ++ + E+ LG Y +GHP++ Y K I R +G + ++ T RG A + Sbjct: 940 DVKPWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGL 999 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 VV+ + T++G+RIG T + + E F Sbjct: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|229507681|ref|ZP_04397186.1| DNA polymerase III alpha subunit [Vibrio cholerae BX 330286] gi|229512124|ref|ZP_04401603.1| DNA polymerase III alpha subunit [Vibrio cholerae B33] gi|229513887|ref|ZP_04403349.1| DNA polymerase III alpha subunit [Vibrio cholerae TMA 21] gi|229519259|ref|ZP_04408702.1| DNA polymerase III alpha subunit [Vibrio cholerae RC9] gi|229607185|ref|YP_002877833.1| DNA polymerase III subunit alpha [Vibrio cholerae MJ-1236] gi|255747058|ref|ZP_05421003.1| DNA polymerase III alpha subunit [Vibrio cholera CIRS 101] gi|262167733|ref|ZP_06035435.1| DNA polymerase III alpha subunit [Vibrio cholerae RC27] gi|262189888|ref|ZP_06048212.1| DNA polymerase III alpha subunit [Vibrio cholerae CT 5369-93] gi|14195659|sp|P52022|DPO3A_VIBCH RecName: Full=DNA polymerase III subunit alpha gi|229343948|gb|EEO08923.1| DNA polymerase III alpha subunit [Vibrio cholerae RC9] gi|229349068|gb|EEO14025.1| DNA polymerase III alpha subunit [Vibrio cholerae TMA 21] gi|229352089|gb|EEO17030.1| DNA polymerase III alpha subunit [Vibrio cholerae B33] gi|229355186|gb|EEO20107.1| DNA polymerase III alpha subunit [Vibrio cholerae BX 330286] gi|229369840|gb|ACQ60263.1| DNA polymerase III alpha subunit [Vibrio cholerae MJ-1236] gi|255735460|gb|EET90860.1| DNA polymerase III alpha subunit [Vibrio cholera CIRS 101] gi|262023798|gb|EEY42497.1| DNA polymerase III alpha subunit [Vibrio cholerae RC27] gi|262034232|gb|EEY52648.1| DNA polymerase III alpha subunit [Vibrio cholerae CT 5369-93] Length = 1159 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + LL GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R Sbjct: 114 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + + +A ++LP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ LP F Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 287 -AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 885 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 941 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|117926508|ref|YP_867125.1| DNA polymerase III subunit alpha [Magnetococcus sp. MC-1] gi|117610264|gb|ABK45719.1| DNA polymerase III, alpha subunit [Magnetococcus sp. MC-1] Length = 1195 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/1071 (42%), Positives = 645/1071 (60%), Gaps = 59/1071 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL + L +++ + Q PA+A+TD NLF A++F AGI+P Sbjct: 4 SFVHLHLHTGYSLLTSTVRLKQAIERAQSLQMPALALTDQGNLFGAIQFYSGCLKAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G QL + K K ++LL EG++ L+ L+++ +L D Sbjct: 64 LLGAQLYLVPDHTNKEERVDKE---VRDQVILLCRNEEGWKNLMRLIAKGHL-DGSHGLP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-----RLYV 184 RI L L++ + GL+ L+ G+ G + R AE +FGD ++ Sbjct: 120 RIDLPLLKQ-HSAGLLALSAGAKGAVGRLLAQERPAEAEAAAAELAAIFGDDGQMPNFHL 178 Query: 185 NLQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 LQRH G +R + VV LA LP+VA+ + ++ ED A D L V + + Sbjct: 179 ELQRHGEPGEERLIQQTVV-LAQKLNLPIVASCDIHYMDPEDANARDALYCVGAVRTLYE 237 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 ++RPR++ + +EM F+DLPEALENT IA RC+ L++ P+LP F Sbjct: 238 ENRPRLSDRYAFATPAEMAERFADLPEALENTRRIAMRCNLQLKLGTPMLPDFALPPGQT 297 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAK---GYHA---QDYRQRLDFELNVIARMKFSGY 356 + E E+R ++ AGLE RL++ + + HA Q Y RL +EL +I +M F GY Sbjct: 298 L----EGEMRTQSEAGLEERLSKYVLPRFPAAEHAELRQRYHDRLTYELGIINQMGFPGY 353 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV+DFI+W K ++IPVGPGRGSGAGS+ A++L+ITD+DP+R++LLFERFLNP+R+SMP Sbjct: 354 FLIVSDFIKWGKDHHIPVGPGRGSGAGSLVAWSLSITDLDPIRYTLLFERFLNPERVSMP 413 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC DRR+EVI YVQ KYG +RVAQIITFG++QAKA +RDVGR L+ PY +VD++ Sbjct: 414 DFDVDFCMDRREEVIGYVQQKYGEDRVAQIITFGTMQAKAVIRDVGRVLEFPYGRVDKIA 473 Query: 477 KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KL+PN ++L +A+ + R R+ + V L+ ++ LEG R THAAG+VI Sbjct: 474 KLVPN--VLGITLKEALEQEPRLRDMMEDEEEVGHLINLALALEGSPRSCGTHAAGVVIS 531 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQ 591 + PL+ VP+YRD RS +PVTQFNM +EKAGL+KFDFLGLKTLT++ +L + AQ Sbjct: 532 NGPLTDTVPLYRDPRSSMPVTQFNMGDVEKAGLVKFDFLGLKTLTVIDNTLKIVNARRAQ 591 Query: 592 RG------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 G V +D++ I +D + LL T G+FQLESSGMR+ L+ + PD EDIIA Sbjct: 592 EGERAEDRVPIDIAAIDIEDERAFRLLMDGRTKGVFQLESSGMREILKKLAPDTFEDIIA 651 Query: 646 LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 LV+LYRPGP+ + +V + RK+G+ + P ++P+L+ET GVI+YQEQVM+IAQ+L+ Sbjct: 652 LVALYRPGPLGSGMVDDFIARKHGRAVVEYPLPQLEPILRETYGVILYQEQVMKIAQVLA 711 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GYSL AD+LRRAMGKK EEM KQ+ F+ GA I A IF+L+ KFA YGFNK Sbjct: 712 GYSLGAADLLRRAMGKKKPEEMAKQRSIFMDGAKAQQIDPEKAGYIFDLMEKFAGYGFNK 771 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAYA+ISYQTAW+K HYPV F+AA+++ +++N +K+ F ++ ++Q++PP VN Sbjct: 772 SHSAAYALISYQTAWLKAHYPVAFMAATLSADINNTDKVVNFVRECHDMSVQVLPPDVNR 831 Query: 824 PCVDFKV----GD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877 V F V GD + + + LAAIK VG +++A + PF SL D C R + L Sbjct: 832 SAVIFSVQPGAGDEDAVRFGLAAIKNVGEAPMAALVKAREEGGPFASLLDLCQRTEGGNL 891 Query: 878 NRRVLESLVFAGALDCFGY-SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 NRR LE+L+ AGA D G +R LL +L +K++ N+F E+ S+ Sbjct: 892 NRRTLENLIKAGACDGLGKGNRAALLSALPEALNRGTQHQKDQKLGFMNLFGDEEAENSE 951 Query: 937 KIT---LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-------KGYEES 986 L + R E E+ LGFY S HPL Y+ + G+ + Y + Sbjct: 952 STANWKLPEVPDWPEEERLEREKEALGFYISSHPLRKYEAEMHDYGLMSLSELREKYGPT 1011 Query: 987 VATIRGNN----IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 GN+ +R +VV ++ +T+KG R+ +VT + + E FP Sbjct: 1012 SQEPMGNDGRVSVRFTGVVVERKLHRTKKGDRMLFVTLEDMLGQMEGVVFP 1062 >gi|15642243|ref|NP_231876.1| DNA polymerase III subunit alpha [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586281|ref|ZP_01676071.1| DNA polymerase III, alpha subunit [Vibrio cholerae 2740-80] gi|121726522|ref|ZP_01679771.1| DNA polymerase III, alpha subunit [Vibrio cholerae V52] gi|147675187|ref|YP_001217760.1| DNA polymerase III subunit alpha [Vibrio cholerae O395] gi|153817071|ref|ZP_01969738.1| DNA polymerase III, alpha subunit [Vibrio cholerae NCTC 8457] gi|153820865|ref|ZP_01973532.1| DNA polymerase III, alpha subunit [Vibrio cholerae B33] gi|153825312|ref|ZP_01977979.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-2] gi|227082369|ref|YP_002810920.1| DNA polymerase III, alpha subunit [Vibrio cholerae M66-2] gi|254286447|ref|ZP_04961404.1| DNA polymerase III, alpha subunit [Vibrio cholerae AM-19226] gi|254849375|ref|ZP_05238725.1| DNA polymerase III subunit alpha [Vibrio cholerae MO10] gi|9656805|gb|AAF95389.1| DNA polymerase III, alpha subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549547|gb|EAX59573.1| DNA polymerase III, alpha subunit [Vibrio cholerae 2740-80] gi|121630975|gb|EAX63354.1| DNA polymerase III, alpha subunit [Vibrio cholerae V52] gi|126512339|gb|EAZ74933.1| DNA polymerase III, alpha subunit [Vibrio cholerae NCTC 8457] gi|126521657|gb|EAZ78880.1| DNA polymerase III, alpha subunit [Vibrio cholerae B33] gi|146317070|gb|ABQ21609.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395] gi|149740996|gb|EDM55065.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-2] gi|150423396|gb|EDN15340.1| DNA polymerase III, alpha subunit [Vibrio cholerae AM-19226] gi|227010257|gb|ACP06469.1| DNA polymerase III, alpha subunit [Vibrio cholerae M66-2] gi|227014141|gb|ACP10351.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395] gi|254845080|gb|EET23494.1| DNA polymerase III subunit alpha [Vibrio cholerae MO10] Length = 1164 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 9 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + LL GY+ L L+S+ YL + Sbjct: 69 PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R Sbjct: 119 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 177 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + + +A ++LP+VATN +F++EE +EAH++ +A+ + R Sbjct: 178 TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 235 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ LP F Sbjct: 236 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 290 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 291 MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 350 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 351 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 410 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 411 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 470 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 471 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 529 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 530 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 589 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 590 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 649 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 650 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 709 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 710 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 769 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 770 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 829 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ Sbjct: 830 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 889 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 890 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 945 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 946 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1005 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1006 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035 >gi|153839483|ref|ZP_01992150.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AQ3810] gi|149746988|gb|EDM57976.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AQ3810] Length = 1159 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1052 (41%), Positives = 630/1052 (59%), Gaps = 53/1052 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++HS +S+++G + I+ K+A PA+A+TD NL ++F A +G++ Sbjct: 4 PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + G+ + + +L + GY+ L L+S+ YL + Sbjct: 64 PIIGA--DFKMQSD----EFGEE----LTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E+ +EGLI+L+G +G I +A + ++ E + +K+ F DR Y+ L R Sbjct: 114 PVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + + LA H+LP+VATN +FLS + ++AH++ +A+ + RP+ Sbjct: 173 TGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + E Sbjct: 233 NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV +F Sbjct: 288 ETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + E AD V L+++ + LEG R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V + Sbjct: 527 PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP +D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 ESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + +L T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F V Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVD 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +N I Y + AIKGVG I+EA + F L DFC+R+D K++N+RV+E L++AG Sbjct: 827 ENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 ALD G R ++ SL++ K A ++H A +G +T VEN Sbjct: 887 ALDRLGPHRAAMMASLNDAVKAA--------SQHHQAEAFGQGDMFGVLTDAPEEVENKY 938 Query: 948 -------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A + Sbjct: 939 TQVPPWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGL 998 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V++ + T++G+RIG +T + + E F Sbjct: 999 VIAARVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|258593588|emb|CBE69929.1| DNA polymerase III, alpha subunit [NC10 bacterium 'Dutch sediment'] Length = 1146 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1033 (42%), Positives = 626/1033 (60%), Gaps = 26/1033 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA SL ++ K + PA+A+TD NLF A++F A GI+PI Sbjct: 6 FVHLHVHTQYSLLDGACSLETLVAKAKEYKMPALAMTDHGNLFGAIDFYTLAMKEGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ I + +NQ + + I LL GY+ L++LVS YL + R Sbjct: 66 IGSEVYIAPGSRFEKSNQ-DSGYEGASHITLLAKDQVGYRNLMKLVSAGYL-EGFYYKPR 123 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I + +GLI L+G + +A A++ + + G + ++ +Q H Sbjct: 124 IDRELFAQ-HCQGLIALSGCLNSEAAKALLDGDEARAKETVGWYMDALGRENYFLEVQNH 182 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + V++LA +LP+VATN+ + S+ED AH+VL+ + + KDR R Sbjct: 183 GIAEQKTVTDGVLRLAKAFDLPIVATNDLHYPSKEDARAHEVLLCIQTGKTIQDKDRWRF 242 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + D Y K+ +EM IF++LPEA+ NT+ +A RC+ LQ LPR+ E + Sbjct: 243 STDQFYFKSAAEMKQIFAELPEAVRNTITVAERCNLQLQFGQLRLPRYQVPEGQTL---- 298 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ L + A GL++R + + RL +EL+VI + FSGYFL+V DFI++A Sbjct: 299 ESYLAHLAWEGLKIRYPDANV-------EVEARLKYELDVIQKTGFSGYFLVVWDFIKFA 351 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K I VGPGRGS A S+ AY L IT+IDPLR+ L+FERFLNP+R+SMPD DIDF DRR Sbjct: 352 KDRGISVGPGRGSAAASLVAYCLNITNIDPLRYGLIFERFLNPERISMPDMDIDFSDDRR 411 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV KYG + VAQIITFG++ AKA +RDVGR L MPY++VD++ KL+PN + Sbjct: 412 DEVIEYVTRKYGADNVAQIITFGTMGAKAVIRDVGRGLGMPYAEVDKIAKLVPNRIN--I 469 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 SL +AIA+ EA V L ++++ LEGL RHASTHAAG+VI PL++ VP+Y Sbjct: 470 SLDEAIAESPPLTEAVQNRTEVGELWQVAKCLEGLTRHASTHAAGVVISGDPLTEHVPLY 529 Query: 547 RDVRS-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 +D ++ P TQ+ MK IEK GL+K DFLGL+TLT++ +L+ +A RG K+ + IP D Sbjct: 530 KDPKAGSKPTTQYAMKAIEKIGLLKVDFLGLRTLTVIANTLELIASGRGDKITIEKIPLD 589 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + LL+ T G+FQLESSGMR + ++P+ +ED+IALV+LYRPGP+ I + NR Sbjct: 590 DPAVFSLLSEARTFGVFQLESSGMRDLMRRLKPERLEDVIALVALYRPGPMVMIDDFINR 649 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KNGK KI HPL++ +LKET G+++YQEQVM+IA L+G+S+ EADVLR+AMGKK E Sbjct: 650 KNGKVKIRYDHPLMETILKETYGIMVYQEQVMRIASDLAGFSMGEADVLRKAMGKKDPEM 709 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MD+Q+++F+ GA G+ A IF+ +A FA Y FNK HA +YA+++YQTA++K HYP Sbjct: 710 MDQQRKKFVDGAKVKGVQARTAEKIFDKMAPFAGYAFNKPHATSYALLAYQTAYLKAHYP 769 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEF+AA +T EM + + I K+ + +Q I ++PP VN F V +I + L AIK Sbjct: 770 VEFMAALLTSEMADTDGIVKYIDECKQMGITVLPPDVNESESRFTVVGEQIRFGLVAIKN 829 Query: 845 VGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG T + I+ DK PF SL DFC RVD + N+RV+ESL+ GA D G +R QL+ Sbjct: 830 VGETAIQSILATRRDKGPFRSLFDFCERVDLRLTNKRVIESLIKCGAFDSLGAARAQLIA 889 Query: 904 SLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLG 960 D + ++ R++ ++ G S + L + + R E+ LG Sbjct: 890 VADKAMEAGAGTQRERSHGQGSLLDVLEATGGLSQQAEALPAIPEWSPTQRLAAEKETLG 949 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY +GHPL Y+ ++ K+G + A + L A+V + ++ T+ G R+ +VTF Sbjct: 950 FYVTGHPLADYRDVIAKVGAVTTDRLAACQDKETVTLCAIVSAVKEITTKSGDRMAFVTF 1009 Query: 1021 SEPAKEYEANFFP 1033 + A EA FP Sbjct: 1010 EDMAGTVEAVAFP 1022 >gi|183179456|ref|ZP_02957667.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-3] gi|183012867|gb|EDT88167.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-3] Length = 1164 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 9 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + LL GY+ L L+S+ YL + Sbjct: 69 PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R Sbjct: 119 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 177 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + + +A ++LP+VATN +F++EE +EAH++ +A+ + R Sbjct: 178 TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 235 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ LP F Sbjct: 236 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 290 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 291 MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 350 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 351 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 410 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 411 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 470 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 471 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 529 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 530 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 589 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 590 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 649 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 650 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 709 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 710 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 769 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 770 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 829 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ Sbjct: 830 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 889 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 890 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 945 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 946 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1005 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1006 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035 >gi|260902378|ref|ZP_05910773.1| DNA polymerase III, alpha subunit family protein [Vibrio parahaemolyticus AQ4037] gi|308110181|gb|EFO47721.1| DNA polymerase III, alpha subunit family protein [Vibrio parahaemolyticus AQ4037] gi|328474386|gb|EGF45191.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus 10329] Length = 1159 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1056 (41%), Positives = 632/1056 (59%), Gaps = 61/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++HS +S+++G + I+ K+A PA+A+TD NL ++F A +G++ Sbjct: 4 PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + G+ + + +L + GY+ L L+S+ YL + Sbjct: 64 PIIGA--DFKMQSD----EFGEE----LTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E+ +EGLI+L+G +G I +A + ++ E + +K+ F DR Y+ L R Sbjct: 114 PVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + + LA H+LP+VATN +FLS + ++AH++ +A+ + RP+ Sbjct: 173 TGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + E Sbjct: 233 NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV +F Sbjct: 288 ETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + E AD V L+++ + LEG R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V + Sbjct: 527 PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP +D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 ESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +V N +RK+G+E I S+ ++DP T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 647 MVDNFIDRKHGREAISYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V +N I Y + AIKGVG I+EA + F L DFC+R+D K++N+RV+E L Sbjct: 823 FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 ++AGALD G R ++ SL++ K A ++H A +G +T V Sbjct: 883 IYAGALDRLGPHRAAMMASLNDAVKAA--------SQHHQAEAFGQGDMFGVLTDAPEEV 934 Query: 946 EN---------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 EN V E E+ LG Y +GHP++ Y L K +++ T R ++ Sbjct: 935 ENKYTQVPPWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVT 994 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +V++ + T++G+RIG +T + + E F Sbjct: 995 VAGLVIAARVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|94263380|ref|ZP_01287194.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1] gi|93456216|gb|EAT06350.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1] Length = 1174 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1036 (42%), Positives = 634/1036 (61%), Gaps = 21/1036 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA+ L+ + K A+AITD +F ALEF KA AGI+PI Sbjct: 4 FVHLHVHTQYSMLDGAIRLDRLFAKCREYGMEAVAITDHGAMFGALEFYVKAKKAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ I + + K+ ++LL GYQ L++L + + L+ R Sbjct: 64 IGCEFYI--APDSRRDKSAKSAGAAAHHLMLLAMDQTGYQNLMKLAT-IAQLEGFHYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L L + EGLI +T G + A +LF RLY+ +Q ++ Sbjct: 121 IDLEVLAD-HREGLIAMTACLHGKVPSLLVKGDKAGARAEAKRLHELFPGRLYLEMQENQ 179 Query: 191 GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ ++ + +LA ELPLVATN+ +L E+ +AH+VL+ + + +DR R Sbjct: 180 IPEQTTVNEGLKELAAELELPLVATNDCHYLDREEAKAHEVLLCIQTGKTMDSQDRFRFA 239 Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D + K+ +EM + F+ P+AL TVEIA+RC+ L + + P F D + E Sbjct: 240 TDELFFKSPAEMKAAFAHSPQALAATVEIAQRCNLELDLESHHFPDFPVPTGDTLASLFE 299 Query: 309 NELRNKAVAGL-EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E R L E+R QG + YRQRL+ E++VI +M F GYFLIVADFI WA Sbjct: 300 REARAGLAQRLTEMRDKQGLTVGAELEEQYRQRLEHEIDVINQMGFPGYFLIVADFINWA 359 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K IPVGPGRGSGAGS+ AYA+ ITD+DP+ L+FERFLN +R SMPDFD+DFCQ+RR Sbjct: 360 KDQQIPVGPGRGSGAGSLVAYAMRITDVDPIPHGLIFERFLNIERKSMPDFDVDFCQERR 419 Query: 428 DEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 EVI YVQ+KYG + V QI+T+GS++AKA +RDVGRAL M + + DR+ KLIP D + Sbjct: 420 GEVIDYVQHKYGGQSHVVQIVTYGSMKAKAVVRDVGRALGMSFGEADRIAKLIP-DELNI 478 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +AI + +F+E +P V LL +++ LEGL RH S HAAG+VI RP+ + +P+ Sbjct: 479 TLDKAIDKEPKFKELMKREPQVAELLNVAKVLEGLNRHTSIHAAGVVISPRPMVEYLPLC 538 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 + + ++ +TQ++MK E GLIKFDFLGLKTLT++ ++ + A +VD++ IP DD Sbjct: 539 KGPKGEV-LTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKADLDHEVDIAAIPMDD 597 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 +T+ LL LG+FQLESSGMR L M+P+ D+IALV+LYRPGP+++ +V + N Sbjct: 598 AKTFDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVEDFVN 657 Query: 664 RKNGKEKIVSIHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K+G+ +V+ +PL ++P+LKET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKKI Sbjct: 658 TKHGR--MVAKYPLAQLEPILKETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKKI 715 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E M+ +K +F++G + NGI A IF+L+AKFA YGFNKSH+AAYA+I+YQTAW+K Sbjct: 716 PEVMEAEKGKFMAGCADNGIDPKKAEYIFDLVAKFAGYGFNKSHSAAYALIAYQTAWLKA 775 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP +F+AA ++ +M N +K+ ++ + R+ I+++PP +N DF V D+RI + LAA Sbjct: 776 HYPSQFMAALLSCDMGNTDKVVRYINECREHEIEVLPPDINESFRDFTVIDDRIRFGLAA 835 Query: 842 IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K VG I+E D P+ SL DFC RVD +K+NRRV+ESL+ AGA D G R Q Sbjct: 836 VKNVGGAALDSIIEVRETDGPYQSLSDFCGRVDGRKVNRRVIESLIKAGAFDSLGAKRAQ 895 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSSVRFENEQR 957 L LD AQ +++R + ++FA E+ + I L + + + R E+ Sbjct: 896 LFAILDQAMDQAQATQRDRQSGQISLFAAMPAEQAAQAQNIELPEIAEWDEKQRLLLEKE 955 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +GFY +GHPLD Y+ L + + +R+ ++ + +++KG + + Sbjct: 956 TVGFYLTGHPLDKYRRELAAVVDTDLHDLADWNEQQPVRVGGLIRHCKPHRSKKGDAMAF 1015 Query: 1018 VTFSEPAKEYEANFFP 1033 +T + E FP Sbjct: 1016 LTLEDTLASAEVVIFP 1031 >gi|229524247|ref|ZP_04413652.1| DNA polymerase III alpha subunit [Vibrio cholerae bv. albensis VL426] gi|229337828|gb|EEO02845.1| DNA polymerase III alpha subunit [Vibrio cholerae bv. albensis VL426] Length = 1159 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + LL GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R Sbjct: 114 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + + +A ++LP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ LP F Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 287 -AIEDFLVMKSREGLEERLEFLFPDPDVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 885 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 941 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|312173372|emb|CBX81626.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC BAA-2158] Length = 1160 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1052 (41%), Positives = 624/1052 (59%), Gaps = 52/1052 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + ++ A+ PAI ITD NL ++F A G++ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKTSPLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63 Query: 69 PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIG ++ M D L I +L + EGYQ L L+SR Y G Sbjct: 64 PIIGADFNVSSEAMGDELT-------------QITVLAADNEGYQNLTLLISRAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E +GLI+L+GG G + + + + L +++ F DR Y+ Sbjct: 111 PAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHTQVRECLSFYQQHFPDRYYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + V+LA +P+VATN FL+E D++AH++ +A+ + Sbjct: 170 LIRTGRPDEEAYLHAAVELAVAQGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPK 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR +P YL++ EM +FSD+PEALEN+VEIARRC+ +++ LP+F E Sbjct: 230 RPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM--- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L ++ GLE RL + DY QRLD ELNVI +M F GYFLIV Sbjct: 287 --TTEDFLVVESKKGLEERLEFLFPDEKVRAERRADYDQRLDIELNVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 DFCMEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + K Sbjct: 524 DFSPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ Sbjct: 584 IDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 644 QSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EM +Q+ F GA GI +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKNPVEMARQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ F Sbjct: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGLYQF 823 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D I Y + AIKGVG I+EA + F L D C+R D+KK+NRR+LE L+ Sbjct: 824 HVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+ +L + K A K ++F G ++ + S Sbjct: 884 MSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYS 939 Query: 947 N-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + ++ + E+ LG Y +GHP++ Y K I R +G + ++ T RG A + Sbjct: 940 DVKPWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGL 999 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 VV+ + T++G+RIG T + + E F Sbjct: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|229528752|ref|ZP_04418142.1| DNA polymerase III alpha subunit [Vibrio cholerae 12129(1)] gi|229332526|gb|EEN98012.1| DNA polymerase III alpha subunit [Vibrio cholerae 12129(1)] Length = 1159 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + LL GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R Sbjct: 114 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + + +A ++LP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ LP F Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 287 -AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNIGLTVLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 885 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 941 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|229522191|ref|ZP_04411608.1| DNA polymerase III alpha subunit [Vibrio cholerae TM 11079-80] gi|229341116|gb|EEO06121.1| DNA polymerase III alpha subunit [Vibrio cholerae TM 11079-80] Length = 1159 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + LL GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDDLTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R Sbjct: 114 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + + +A ++LP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ LP F Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 287 -AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 885 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 941 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|251790730|ref|YP_003005451.1| DNA polymerase III subunit alpha [Dickeya zeae Ech1591] gi|247539351|gb|ACT07972.1| DNA polymerase III, alpha subunit [Dickeya zeae Ech1591] Length = 1160 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1051 (41%), Positives = 627/1051 (59%), Gaps = 50/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + ++ K AA PA+AITD NL ++F A +AGI+ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKIGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L EGYQ L L+SR Y G Sbjct: 64 PIIGADFYL----------QSEELGDELAHLTVLAMNNEGYQNLTLLISRAYQRGYGADG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E GL++L+GG G I + + + E+ + +++ F R Y+ L R Sbjct: 114 PTIDRAWLVE-HQAGLLLLSGGRHGDIGKFLLRGNQALVEQCVAFYQQHFPQRFYLELTR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA H LP++ATN F+S++D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVTLATAHGLPVIATNEVCFISQDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEDEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L A GLE RLA + AQ +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVMCAKKGLEERLAFLFPDEDVRAQRRPEYDERLDIELGVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K VD+ Sbjct: 527 PLYCDPEGHHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGLEPVDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD ++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKNSFGMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA + G+ +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFKEGAERMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +KI + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRDLFDLCARTDIKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D G R L+ SL + K A K ++F G ++ T E+ S+ Sbjct: 887 AFDRLGPHRAALMNSLADAMKSADQHAKAEAIGQADMF----GVLAE--TPEQVEQSYST 940 Query: 950 VR-------FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 V + E+ LG Y +GHP++ Y K I R G ++ T RG +V Sbjct: 941 VPPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLV 1000 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + T++G+RIG T + + E F Sbjct: 1001 LAARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031 >gi|28899077|ref|NP_798682.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus RIMD 2210633] gi|260876841|ref|ZP_05889196.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AN-5034] gi|260897273|ref|ZP_05905769.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus Peru-466] gi|308125447|ref|ZP_05775347.2| DNA polymerase III, alpha subunit family protein [Vibrio parahaemolyticus K5030] gi|28807301|dbj|BAC60566.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308085355|gb|EFO35050.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus Peru-466] gi|308091396|gb|EFO41091.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AN-5034] gi|308113977|gb|EFO51517.1| DNA polymerase III, alpha subunit family protein [Vibrio parahaemolyticus K5030] Length = 1159 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1052 (41%), Positives = 630/1052 (59%), Gaps = 53/1052 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++HS +S+++G + I+ K+A PA+A+TD NL ++F A +G++ Sbjct: 4 PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + G+ + + +L + GY+ L L+S+ YL + Sbjct: 64 PIIGA--DFKMQSD----EFGEE----LTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E+ +EGLI+L+G +G I +A + ++ E + +K+ F DR Y+ L R Sbjct: 114 PVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFQDRFYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + + LA H+LP+VATN +FLS + ++AH++ +A+ + RP+ Sbjct: 173 TGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + E Sbjct: 233 NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV +F Sbjct: 288 ETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + E AD V L+++ + LEG R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V + Sbjct: 527 PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP +D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 ESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + +L T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F V Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVD 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +N I Y + AIKGVG I+EA + F L DFC+R+D K++N+RV+E L++AG Sbjct: 827 ENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 ALD G R ++ SL++ K A ++H A +G +T VEN Sbjct: 887 ALDRLGPHRAAMMASLNDAVKAA--------SQHHQAEAFGQGDMFGVLTDAPEEVENKY 938 Query: 948 -------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A + Sbjct: 939 TQVPPWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGL 998 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V++ + T++G+RIG +T + + E F Sbjct: 999 VIAARVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|261338818|ref|ZP_05966676.1| hypothetical protein ENTCAN_05013 [Enterobacter cancerogenus ATCC 35316] gi|288318641|gb|EFC57579.1| DNA polymerase III, alpha subunit [Enterobacter cancerogenus ATCC 35316] Length = 1160 Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1052 (41%), Positives = 627/1052 (59%), Gaps = 52/1052 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F A G++ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTAHGVGMK 63 Query: 69 PIIGCQLDIDMQDNL---KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PI+G D +Q L +MT I +L GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFHVQSELLGDEMTQ-----------ISVLAMNNTGYQNLTLLISKAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 Q I WL E+ EGL++++GG G + + +S + ++ + +++ F DR Y+ Sbjct: 111 AQGPWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEHFPDRYYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + V LA LP+VATN+ FL D++AH++ +A+ + Sbjct: 170 LIRTGRADEENYLHAAVALAEQRGLPVVATNDVRFLESGDFDAHEIRVAIHDGFTLDDPK 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR + Y++ EM +FSD+PEALEN+VEIA+RC+ +++ LP+F + Sbjct: 230 RPRNYSSQQYMRTEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM--- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + Y +RLD EL VI +M F GYFLIV Sbjct: 287 --TTEDFLVVKSKEGLEERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 524 DFAPLYCDEAGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLEP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 584 IDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 644 QSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V ++ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ Sbjct: 824 HVNEHGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F G +++ + S Sbjct: 884 MSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAEEPEQIEQSYS 939 Query: 947 N-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000 N V + E+ LG Y +GHP++ Y K I R +G ++ T RG A + Sbjct: 940 NCQPWPEQVVLDGERETLGLYLTGHPINQYIKEIERYVGGNRLKDMHPTDRGKITTAAGL 999 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V++ + T++G+RIG T + + E F Sbjct: 1000 VIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|37680725|ref|NP_935334.1| DNA polymerase III subunit alpha [Vibrio vulnificus YJ016] gi|326423901|ref|NP_760750.2| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6] gi|37199474|dbj|BAC95305.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016] gi|319999277|gb|AAO10277.2| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6] Length = 1159 Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1052 (41%), Positives = 634/1052 (60%), Gaps = 53/1052 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++HS +S+++G + ++ ++AA PA+A+TD NL ++F A GI+ Sbjct: 4 PKFVHLRIHSDFSMVDGINKVPALVKQVAALGMPAMALTDFTNLCGLVKFYGAAHGNGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + + ++ + + +L + GY+ L L+S+ YL + Sbjct: 64 PIIGA--DFKMQ-SPEFGDE-------LTQLTVLAADNTGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ +EGLI+L+G +G I +A + ++ E + +++ F DR YV L R Sbjct: 114 PVIDKEWLIEL-SEGLIILSGARNGEIGKALLKGNQKLVESCVDFYQQHFADRFYVELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + ++LA ++LP+VATN +F+ +E ++AH++ +A+ + RP+ Sbjct: 173 TGRSDEETYLHFAIELAEQYDLPVVATNEVVFIGQELFDAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + Sbjct: 233 NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLWEYFLPAFPTEGM-----A 287 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 E L K+ GLE RL AQ +Y +RL EL+VI +M F GYFLIV +F Sbjct: 288 ETEFLVMKSKEGLEERLEFLFPDPEIRAQRRPEYDERLQVELDVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + E AD V L+++ + LEG R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R V + Sbjct: 527 PIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD ++ +L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 ESIPLDDPASFRILQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +V N +RK+G+E I S+ ++DP T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 647 MVDNFIDRKHGREAISYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V +N I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDENGAIVYGIGAIKGVGEGPIDAILEARTKGGHFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEK 942 ++AGALD G R L+ SLD+ K A + ++F G +D ++ + Sbjct: 883 IYAGALDRLGPHRAALMASLDDAVKAASQHHQAEAFGQADMF----GVLTDAPEEVEHKY 938 Query: 943 FSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 VE V E E+ LG Y +GHP++ Y L K +++ T R ++ LA + Sbjct: 939 IQVEPWPEKVWLEGERETLGLYLTGHPVNAYLTELNKYTSCRLKDATPTRRDQSLTLAGL 998 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V++ + T++G+RIG +T + + E F Sbjct: 999 VIAARVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|310764935|gb|ADP09885.1| DNA polymerase III subunit alpha [Erwinia sp. Ejp617] Length = 1160 Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1052 (41%), Positives = 625/1052 (59%), Gaps = 52/1052 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G +++ A+ PAI ITD NL ++F A G++ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKTGSLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63 Query: 69 PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIG ++ M D L I +L + +GYQ L L+SR Y G Sbjct: 64 PIIGADFNVSSEAMGDELT-------------QITVLAADNDGYQNLTLLISRAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E +GLI+L+GG G + + + + L +++ F DR Y+ Sbjct: 111 PAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNPTQVNECLNFYQQYFPDRYYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + V+LA +P+VATN FL+E D++AH++ +A+ + Sbjct: 170 LIRTGRPDEETYLHAAVELAVARGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPK 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR +P YL++ EM +FSD+PEALEN+VEIARRC+ +++ LP+F E Sbjct: 230 RPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM--- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + +Y +RLD ELNVI +M F GYFLIV Sbjct: 287 --STEDFLVVKSKQGLEERLEFLFPDEKLRAVRRAEYDERLDIELNVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 DFCMEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + K Sbjct: 524 DFAPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ Sbjct: 584 IDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 644 QSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKNPVEMAKQRGGFEDGAKARGVDGELAIKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ F Sbjct: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQF 823 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D+ I Y + AIKGVG I+EA + F L D C+R D+KK+NRR+LE L+ Sbjct: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+ +L + K A K ++F G ++ + S Sbjct: 884 MSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYS 939 Query: 947 N-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + ++ + E+ LG Y +GHP++ Y K I R +G + ++ T RG A + Sbjct: 940 DVKPWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGL 999 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 VV+ + T++G+RIG T + + E F Sbjct: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|259907557|ref|YP_002647913.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96] gi|224963179|emb|CAX54663.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96] gi|283477397|emb|CAY73313.1| DNA polymerase III alpha subunit [Erwinia pyrifoliae DSM 12163] Length = 1160 Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1052 (41%), Positives = 624/1052 (59%), Gaps = 52/1052 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G +++ A+ PAI ITD NL ++F A G++ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKTGSLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63 Query: 69 PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIG ++ M D L I +L + +GYQ L L+SR Y G Sbjct: 64 PIIGADFNVSSEAMGDELT-------------QITVLAADNDGYQNLTLLISRAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E +GLI+L+GG G + + + + L +++ F DR Y+ Sbjct: 111 PAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNPTQVNECLNFYQQYFPDRYYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + V+LA +P+VATN FL+E D++AH++ +A+ + Sbjct: 170 LIRTGRPDEETYLHAAVELAVARGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPK 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR +P YL++ EM +FSD+PEALEN+VEIARRC+ +++ LP+F E Sbjct: 230 RPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM--- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + +Y +RLD ELNVI +M F GYFLIV Sbjct: 287 --STEDFLVVKSKQGLEERLEFLFPDEKLRAVRRAEYDERLDIELNVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 DFCMEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + K Sbjct: 524 DFAPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEAP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ Sbjct: 584 IDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 644 QSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKNPVEMAKQRGGFEDGAKARGVDGELAIKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ F Sbjct: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQF 823 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D I Y + AIKGVG I+EA + F L D C+R D+KK+NRR+LE L+ Sbjct: 824 HVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+ +L + K A K ++F G ++ + S Sbjct: 884 MSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYS 939 Query: 947 N-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + ++ + E+ LG Y +GHP++ Y K I R +G + ++ T RG A + Sbjct: 940 DVKPWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGL 999 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 VV+ + T++G+RIG T + + E F Sbjct: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|153213783|ref|ZP_01948991.1| DNA polymerase III, alpha subunit [Vibrio cholerae 1587] gi|124115707|gb|EAY34527.1| DNA polymerase III, alpha subunit [Vibrio cholerae 1587] Length = 1164 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1050 (41%), Positives = 628/1050 (59%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 9 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + LL GY+ L L+S+ YL + Sbjct: 69 PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R Sbjct: 119 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 177 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + + +A ++LP+VATN +F++EE +EAH++ +A+ + R Sbjct: 178 TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 235 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ LP F Sbjct: 236 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 291 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 292 -AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 350 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 351 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 410 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 411 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 470 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 471 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 529 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 530 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 589 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 590 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 649 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 650 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 709 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 710 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 769 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 770 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 829 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + F L D C+R+D KK+N+RV+E L+ Sbjct: 830 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDLCARIDLKKVNKRVIEKLIL 889 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS- 944 AGALD G R ++ S+D+ + A + ++F G +D + +K++ Sbjct: 890 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEDVEQKYTQ 945 Query: 945 --VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V+ Sbjct: 946 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1005 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1006 AARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035 >gi|188533052|ref|YP_001906849.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99] gi|188028094|emb|CAO95951.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99] Length = 1160 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1052 (41%), Positives = 624/1052 (59%), Gaps = 52/1052 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G ++ A PAI ITD NL ++F A G++ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKTAPLVKYAAKMGMPAIGITDFTNLCGLVKFYGTAHGQGMK 63 Query: 69 PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIG +++ M D L I +L + +GYQ L L+SR Y G Sbjct: 64 PIIGADFNVNSEAMGDELT-------------QITVLAADNQGYQNLTLLISRAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E +GLI+L+GG G + + + + L +++ F DR Y+ Sbjct: 111 PAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHVQVNECLNFYQQHFPDRYYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + V+LA +P+VATN FL+E D++AH++ +A+ + Sbjct: 170 LIRTGRPDEETYLHAAVELAVAQSVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDPK 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR +P YL++ EM +FSD+PEALEN+VEIARRC+ +++ LP+F E Sbjct: 230 RPREYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGEYFLPQFPTGEM--- 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + A+ Y +RLD ELNVI +M F GYFLIV Sbjct: 287 --TTEDFLVVKSKQGLEERLTFLFPDEKIRAERRPAYDERLDIELNVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 DFCMEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 524 DFAPLYCDEHGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKSGEAP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ Sbjct: 584 IDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 644 QSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKNPEEMAKQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ F Sbjct: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQF 823 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D I Y + AIKGVG I+EA + F L D C+R D+KK+NRR+LE L+ Sbjct: 824 HVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+ +L + K A K ++F G ++ + S Sbjct: 884 MSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYS 939 Query: 947 N-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + ++ + E+ LG Y +GHP++ Y K I R +G + ++ T RG A + Sbjct: 940 DVKPWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGL 999 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 VV+ + T++G+RIG T + + E F Sbjct: 1000 VVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|24373212|ref|NP_717255.1| DNA polymerase III subunit alpha [Shewanella oneidensis MR-1] gi|24347436|gb|AAN54699.1|AE015610_3 DNA polymerase III, alpha subunit [Shewanella oneidensis MR-1] Length = 1158 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1050 (41%), Positives = 621/1050 (59%), Gaps = 50/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL ++ A A+A+TD NNL ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121 PIIG D MQ VP ++ ++ EGYQ L +++S+ YL Sbjct: 64 PIIGA--DFWMQ---------------VPGFEDEFCAVTIIAMDNEGYQNLTQIISQAYL 106 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 Q + V I WL G+++L+GG G I +A ++ E +++ F R Sbjct: 107 RGQVQGRVVIDQEWLITY-NPGILLLSGGKEGDIGKALLKGNNTQVESLCEFYQQHFEGR 165 Query: 182 LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 ++ L R D R + V +A +P+VATN +FL ED+EAH++ +A+ + Sbjct: 166 YFLELLRTGRPDEERYLHMAVGVAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTL 225 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + RP+ + YL++ EM +F+D+P AL NTVEIA+RC+ ++++ LP F + Sbjct: 226 ADPRRPKKYSEQQYLRSEDEMCELFADIPAALANTVEIAKRCNVTIRLNEYFLPNFPTGD 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E+ L + + GLE RLA + +Y +RLD EL VI +M F GY Sbjct: 286 M-----SIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGY 340 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP Sbjct: 341 FLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 401 DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP +P ++ +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI Sbjct: 461 KLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAP 519 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + VK Sbjct: 520 TKITDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKN 579 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 + + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+R Sbjct: 580 GRSPIRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSG Sbjct: 640 PGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSG 699 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKS Sbjct: 700 YTLGGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKS 759 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + I+PP VN Sbjct: 760 HSAAYALVSYQTLWLKTHFPPQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKG 819 Query: 825 CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E Sbjct: 820 LFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFTDLFDFCARIDLKKLNKRVIE 879 Query: 884 SLVFAGALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 L+ AGALD G R ++ +L + I Q + +H+ K + Sbjct: 880 KLICAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVE 939 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV Sbjct: 940 CTPWPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVV 999 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++GS++G +T + + E F Sbjct: 1000 ATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|304414199|ref|ZP_07395567.1| DNA polymerase III alpha subunit [Candidatus Regiella insecticola LSR1] gi|304283413|gb|EFL91809.1| DNA polymerase III alpha subunit [Candidatus Regiella insecticola LSR1] Length = 1160 Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1046 (41%), Positives = 624/1046 (59%), Gaps = 40/1046 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + ++ K A+ PA+AITD NL ++F A AAGI+ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKTSALVKKAASLGMPALAITDFTNLCGLIKFYSSAQAAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q K + + +L +GYQ L L+S+ Y G Sbjct: 64 PIIGADFYL----------QSKLLDDELAQLTILARNQQGYQNLTLLISKAYQRGYGASG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187 I WL +EGLI+L+GG SG + + F +Q L F ++ F D Y+ L Sbjct: 114 PLIDRDWLI-THSEGLILLSGGRSGDVGK-FMLRGNQTQMLECLAFYQQYFADNYYLELI 171 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R + + LA H++P+VATN+ F+ D+EAH++ +A+ ++ RP Sbjct: 172 RTGRPDEENYLRGAIALASQHDIPVVATNDVRFIDTSDFEAHEIRVAIHDGATLADTKRP 231 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +P +++N EM ++FSD+PEAL N++EIA+RC+ +++ LP+F Sbjct: 232 KNYSPQQFMRNEQEMCALFSDIPEALTNSIEIAKRCNLSIRLGEYFLPQFPTGAM----- 286 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ KA GLE RLA K Y +RL+ E+ VI +M F+GYFLIV + Sbjct: 287 STEDFFAEKAQLGLEERLAFLFPDVNTKKQRRAAYDERLNVEIKVINQMGFAGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N IPVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFDIDF Sbjct: 347 FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFDIDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD+VI +V N YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP D Sbjct: 407 CMEKRDQVIEHVANIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPLD 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 467 VGMTLE-KAFAAEPQLAELYQADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VD 597 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + AQ+ K +D Sbjct: 526 SPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWTLVMINAQQASKGLPSID 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD +++ LL T +FQLES GM+ ++ ++PDC EDIIALV+L+RPGP+ + Sbjct: 586 ITTIPLDDKKSFALLQRAETTAVFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E I H L+ P+L+ T G+I+YQEQVMQIAQ+LSGYSL A Sbjct: 646 GMVDNFIDRKHGREALSYPDIQWQHELLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM KQ+ F +GA + GI +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DMLRRAMGKKDPVEMAKQRSIFENGAKQQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+A MT +MDN +K+ + + ++++ P +N+ F V Sbjct: 766 LVSYQTLWLKAHYPAEFMAGVMTADMDNTDKLVGMVDECIRMGLKVLLPDINSGSYHFNV 825 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ I Y + AIKGVG I+ A A F L D C+R ++KKLNRRVLE L+ + Sbjct: 826 NDDGEIVYGIGAIKGVGEGPITAILNARQAGGHFKDLFDLCARTETKKLNRRVLEKLILS 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947 GA D G R L+ SL+ K A K +++F G+ + + + Sbjct: 886 GAFDRLGPHRASLMHSLETALKAADQHAKAEAIGQKDMFGVLTGSPEQVEHSYANIAPWQ 945 Query: 948 SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + E E+ LG Y +GHP+ Y K + R G ++ T RG +A +V++ + Sbjct: 946 EQIVLEGERETLGLYLTGHPITQYLKELERYSGGIRLKDLHVTERGKTTTVAGLVIAARV 1005 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1006 IVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|311087135|gb|ADP67215.1| DNA polymerase III alpha chain [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 1161 Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1056 (41%), Positives = 642/1056 (60%), Gaps = 59/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL VHS YS+++G +++ K A+ PAIAITD NNL+ ++F A G++ Sbjct: 4 PKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLGLK 63 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125 PIIG ++ D+ +N + + LL ST EGY+ LI L+SR Y +G Sbjct: 64 PIIGITVNFFSDLINN------------QLTKLTLLASTQEGYKNLILLISRAY--QKGY 109 Query: 126 --KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 V I W EI +GLI+L+GG G + + S + L ++K F D Y Sbjct: 110 VHNNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYY 168 Query: 184 VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R +R + V L+ + +P+VATN+ FLS+ED++ H + +A+ ++ Sbjct: 169 LELFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQH 228 Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 K + + +LK EM +FSD+PEAL N+VEIA+RC+ + LP+F + Sbjct: 229 SKIQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGKI- 287 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAI----AKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E L +A G++ RL + K ++Q Y RLD EL VI +M F GYF Sbjct: 288 ----SVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQ-YINRLDMELTVINKMGFPGYF 342 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPD Sbjct: 343 LIVMEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPD 402 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC ++RD+VI +V YG VAQIITFG+L AKA +RDVGR L PY +++L K Sbjct: 403 FDIDFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSK 462 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P DP + +A + +S + V L++I++KLEG R+ HA G+VI Sbjct: 463 LVPLDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPT 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQR 592 ++ P+Y D + + PVTQF+ IE GL+KFDFLGL+TLT++ +++ + + Sbjct: 522 KITDFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNK 581 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 ++++ IP DD + ++LL T G+FQLES GM+ ++ +QPDC ED+IALV+L+RP Sbjct: 582 KRTININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRP 641 Query: 653 GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V N NRK+G+E I H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY Sbjct: 642 GPLQSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGY 701 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAM KK ++M +Q+ F GAS NGI K +++ IF+LL KFA YGFNKSH Sbjct: 702 TLGSADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSH 761 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 + AYA++SYQT W+K+HYP EF+AA+MT ++DN EKI ++ ++I+PP++N Sbjct: 762 SVAYALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSK 821 Query: 826 VDFKVGD-NRIYYSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 +F V D I Y L AIKG+G + + I E +K F L D C R+DS+K+ RRVLE Sbjct: 822 YEFYVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLE 881 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEK 942 L+ +G+ DCF +R LLQS+D+ ++ + ++ K +++F G F +++ ++K Sbjct: 882 KLIMSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLF----GIFQNELNQVKK 937 Query: 943 FSVEN----SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIR 996 ++ N + +NE +VLGFY +GHP++ YK L + + G + S R I Sbjct: 938 NNLVNLVCPEKNKLQNEYQVLGFYLTGHPINQYKKEL-ECYVNGVKLSQLKFIKRNKKIL 996 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++VS + K T+ +RI + + E F Sbjct: 997 VAGIIVSIKIKITKNKNRIAILVLDDNTSRLEVVIF 1032 >gi|219681609|ref|YP_002467995.1| DNA polymerase III alpha chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471295|ref|ZP_05635294.1| DNA polymerase III alpha chain [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624452|gb|ACL30607.1| DNA polymerase III alpha chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 1161 Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1056 (41%), Positives = 645/1056 (61%), Gaps = 59/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL VHS YS+++G +++ K A+ PAIAITD NNL+ ++F A G++ Sbjct: 4 PKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLGLK 63 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125 PIIG ++ D+ +N + + LL ST EGY+ LI L+SR Y +G Sbjct: 64 PIIGITVNFFSDLINN------------QLTKLTLLASTQEGYKNLILLISRAY--QKGY 109 Query: 126 --KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 V I W EI +GLI+L+GG G + + S + L ++K F D Y Sbjct: 110 VHNNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYY 168 Query: 184 VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R +R + V L+ + +P+VATN+ FLS+ED++ H + +A+ ++ Sbjct: 169 LELFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQH 228 Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 K + + +LK EM +FSD+PEAL N+VEIA+RC+ + LP+F + Sbjct: 229 SKIQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGKI- 287 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAI----AKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E L +A G++ RL + K ++Q Y RLD EL VI +M F GYF Sbjct: 288 ----SVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQ-YINRLDMELTVINKMGFPGYF 342 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPD Sbjct: 343 LIVMEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPD 402 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC ++RD+VI +V YG VAQIITFG+L AKA +RDVGR L PY +++L K Sbjct: 403 FDIDFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSK 462 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P DP + +A + +S + V L++I++KLEG R+ HA G+VI Sbjct: 463 LVPLDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPT 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQR 592 ++ P+Y D + + PVTQF+ IE GL+KFDFLGL+TLT++ +++ + + Sbjct: 522 KITDFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNK 581 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 ++++ IP DD + ++LL T G+FQLES GM+ ++ +QPDC ED+IALV+L+RP Sbjct: 582 KRTININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRP 641 Query: 653 GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V N NRK+G+E I H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY Sbjct: 642 GPLQSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGY 701 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAM KK ++M +Q+ F GAS NGI K +++ IF+LL KFA YGFNKSH Sbjct: 702 TLGSADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSH 761 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 + AYA++SYQT W+K+HYP EF+AA+MT ++DN EKI ++ ++I+PP++N Sbjct: 762 SVAYALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSK 821 Query: 826 VDFKVGD-NRIYYSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 +F V D I Y L AIKG+G + + I E +K F L D C R+DS+K+ RRVLE Sbjct: 822 YEFYVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLE 881 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEK 942 L+ +G+ DCF +R LLQS+D+ ++ + ++ K +++F G F +++ ++K Sbjct: 882 KLIMSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLF----GIFQNELNQVKK 937 Query: 943 FSVEN----SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGN-NIR 996 ++ N + +NE +VLGFY +GHP++ YK L + + G + S + IR N I Sbjct: 938 NNLVNLVCPEKNKLQNEYQVLGFYLTGHPINQYKKEL-ECYVNGVKLSQLKFIRRNKKIL 996 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++VS + K T+ +RI + + E F Sbjct: 997 VAGIIVSIKIKITKNKNRIAILVLDDNTSRLEVVIF 1032 >gi|325496116|gb|EGC93975.1| DNA polymerase III subunit alpha [Escherichia fergusonii ECD227] Length = 1150 Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1046 (41%), Positives = 629/1046 (60%), Gaps = 54/1046 (5%) Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75 +HS YS+++G ++ K AA PA+AITD NL ++F AGI+PI+G Sbjct: 1 MHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA-- 58 Query: 76 DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 D ++Q +L + + +L + GYQ L L+S+ Y G I W Sbjct: 59 DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 110 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDR 194 L E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 111 LIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEE 169 Query: 195 YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHY 253 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y Sbjct: 170 SYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQY 229 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313 +++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L Sbjct: 230 MRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVK 284 Query: 314 KAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 +A GLE RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N Sbjct: 285 RAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDN 344 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+V Sbjct: 345 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQV 404 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ + Sbjct: 405 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-K 463 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A + + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D Sbjct: 464 AFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 523 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDD 605 PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD Sbjct: 524 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N + Sbjct: 584 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 643 Query: 664 RKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMG Sbjct: 644 RKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 703 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W Sbjct: 704 KKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 763 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYY 837 +K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y Sbjct: 764 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVY 823 Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G Sbjct: 824 GIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 883 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-------- 948 R L+ SL + K A K ++F G ++ E +E S Sbjct: 884 HRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWP 935 Query: 949 -SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A +VV+ + Sbjct: 936 EQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARV 995 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 996 MVTKRGNRIGICTLDDRSGRLEVMLF 1021 >gi|262044745|ref|ZP_06017792.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037895|gb|EEW39119.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 1160 Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1053 (41%), Positives = 627/1053 (59%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHVAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D +Q +L + +L + GYQ L L+SR Y G Sbjct: 64 PIVGA--DFHVQCDLLGDE--------FTELTVLAANNTGYQNLTLLISRAYQRGYGALG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+GG G + + + + E+ + +++ F DR ++ L R Sbjct: 114 PWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA LP+VATN+ FL D++AH++ +A+ + RPR Sbjct: 173 TGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + +Y QRLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|307129835|ref|YP_003881851.1| DNA polymerase III subunit alpha [Dickeya dadantii 3937] gi|306527364|gb|ADM97294.1| DNA polymerase III alpha subunit [Dickeya dadantii 3937] Length = 1160 Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1051 (41%), Positives = 631/1051 (60%), Gaps = 50/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F A AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L EGYQ L L+SR Y G Sbjct: 64 PIIGADFYL----------QSEELGDELAHLTILAMNNEGYQNLTLLISRAYQRGYGADG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E GL++L+GG G I + + + E+ + +++ F R Y+ L R Sbjct: 114 PTIDRAWLVE-HQAGLLLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELVR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA H LP+VATN+ F+S++D+EAH++ +A+ + RP+ Sbjct: 173 TGRPDEESYLHAAVELATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F D+ E Sbjct: 233 NYSVQQYMRSEEEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQF---PTGDMSTE 289 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 + + +K GLE RL + AQ +Y +RL+ ELNVI +M F GYFLIV +F Sbjct: 290 DYLVMCSKK--GLEERLTFLFPDEEVRAQRRPEYDERLEIELNVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D+ Sbjct: 527 PLYCDPEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQELEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDIEWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA G+ +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFKEGAETMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +KI + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + D F L D C+R D KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNNDGYFRDLFDLCARTDIKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D G R L+ SL + K A+ K ++F G ++ T E+ S+ Sbjct: 887 AFDRLGPHRAALMNSLADAMKSAEQHAKAEAIGQADMF----GVLAE--TPEQVEQSYST 940 Query: 950 VR-------FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 V + E+ LG Y +GHP++ Y K I R G ++ T RG +V Sbjct: 941 VPPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLV 1000 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + T++G+RIG T + + E F Sbjct: 1001 LAARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031 >gi|152968778|ref|YP_001333887.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893180|ref|YP_002917914.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae NTUH-K2044] gi|150953627|gb|ABR75657.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545496|dbj|BAH61847.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1160 Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1053 (41%), Positives = 627/1053 (59%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D +Q +L + +L + GYQ L L+SR Y G Sbjct: 64 PIVGA--DFHVQCDLLGDE--------FTELTVLAANNTGYQNLTLLISRAYQRGYGALG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+GG G + + + + E+ + +++ F DR ++ L R Sbjct: 114 PWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA LP+VATN+ FL D++AH++ +A+ + RPR Sbjct: 173 TGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + +Y QRLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A K ++F G ++ E +E S Sbjct: 887 AFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R +G ++ T RG A Sbjct: 939 ASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|254225765|ref|ZP_04919370.1| DNA polymerase III, alpha subunit [Vibrio cholerae V51] gi|125621671|gb|EAZ50000.1| DNA polymerase III, alpha subunit [Vibrio cholerae V51] Length = 1164 Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1052 (41%), Positives = 627/1052 (59%), Gaps = 53/1052 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 9 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + LL GY+ L L+S+ YL + Sbjct: 69 PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG G + RA + Q E+ + ++ F D Y+ L R Sbjct: 119 PVIDKAWLVE-HAEGLIVLSGGKRGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 177 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + + +A ++LP+VATN +F++EE +EAH++ +A+ + R Sbjct: 178 TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 235 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ LP F Sbjct: 236 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 290 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 291 MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQIELDVINQMGFPGYFLIVM 350 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 351 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 410 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 411 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 470 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 471 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 529 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 530 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 589 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 590 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 649 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 650 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 709 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 710 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 769 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 770 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 829 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ Sbjct: 830 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 889 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGALD G R ++ S+D+ + A + ++F G +D E+ + Sbjct: 890 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTD--APEEVEQKY 943 Query: 948 SSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + V R E E+ LG Y +GHP+D Y L K E+ T R ++ +A + Sbjct: 944 TQVPEWPEKARLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGL 1003 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V++ + T++G+RIG +T + + E + Sbjct: 1004 VIAARVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035 >gi|254448006|ref|ZP_05061470.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC5015] gi|198262432|gb|EDY86713.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC5015] Length = 1175 Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1056 (42%), Positives = 629/1056 (59%), Gaps = 62/1056 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL++H+ YSL++ + + ++ A PA+A+TD NLF+ ++F A AAGI Sbjct: 2 SSSFVHLRLHTEYSLVDSVVRIKPLISTAAEQGMPALALTDQCNLFAMVKFFGAASAAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE--GYQRLIELVSRMYLLDQG 125 + + G L + +D P PS VLL+ + GY+ L ELVS+ Y Q Sbjct: 62 KALFGADLLVRNED------------PKKPSTVLLLLAMDDVGYRNLTELVSQAYTEGQA 109 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I +WL E TEGLI L+GG G I RA FN + L +K+ F +R Y+ Sbjct: 110 GGLPVIERTWL-EGRTEGLIALSGGPWGDIGRAIAFNHHEQIPPLLAFYKQHFPNRFYLE 168 Query: 186 LQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR G Y E+ V LA H+LP+VATN+ F+ +D+++H+V + + ++ Sbjct: 169 LQRTGREGEALYNET-AVSLAAEHQLPVVATNDVRFIHADDFDSHEVRVCIHEGRLLDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R +P+ YL++ EMV +FSDLPEA+ENT+EIA+RC+ + LP + + + Sbjct: 228 RRSRHYSPEQYLRSPEEMVELFSDLPEAIENTLEIAKRCNVAPHMGEYFLPDYPVPDGET 287 Query: 303 IQKEEENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I ++ R ++ GLE R+ + G Q YR RL+ E+ VI M F GYF Sbjct: 288 I----DSFFRKQSQEGLEWRMEKLQRDTGTTWDEAKVQSYRDRLEREIGVILNMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPIEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC + RD VI YV KYG ++V+QIIT+GS+ AKA +RDVGR L Y VD + K Sbjct: 404 FDVDFCMEGRDRVIDYVAQKYGRDQVSQIITYGSMAAKAVVRDVGRVLGHGYGFVDGIAK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 LIP + +S QA+ + ++ D V LL+++ KLEGL R+A HA G+VI Sbjct: 464 LIPMEVGITLS-QALEESEELKQRYEEDEEVTNLLDMALKLEGLSRNAGKHAGGVVIAPS 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----- 592 L+ P+Y + VTQF+ +E GL+KFDFLGL+TLT++ +L + R Sbjct: 523 KLTDFTPLYCEEGGGGLVTQFDKDDVEAIGLVKFDFLGLRTLTIINWALKEINSRLEAAG 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D+ IP DD T+ LL + T +FQLESSGM+ ++ +QPD EDI+ALV+L+RP Sbjct: 583 HPLLDIDAIPLDDAPTFDLLKAQQTTAVFQLESSGMKNLIKKLQPDSFEDIVALVALFRP 642 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+D+ +V + RK+G++++ HP + P+L+ T G+I+YQEQVMQIAQ++ GY Sbjct: 643 GPLDSGMVDDFIRRKHGQDEVSYPHPDYQYDGLKPVLEPTYGIILYQEQVMQIAQVMGGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL AD+LRRAMGKK EEM KQKE F+ G NGI ++A NIF+L+ KFA YGFNKSH Sbjct: 703 SLGGADLLRRAMGKKKLEEMAKQKEVFLKGCGDNGIDLSLAENIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++SYQTAW+K HYP F+AA ++ + DN +K+ ++ R + I+PP VN+ Sbjct: 763 SAAYALVSYQTAWLKAHYPSAFMAAVLSADSDNTDKVVNLIEECRNMGLTILPPDVNSSA 822 Query: 826 VDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883 F + D++ I Y L A+KGVG I E A+ + L DFC R+D +KLNRRV E Sbjct: 823 YKFTMQDDKTIRYGLGALKGVGQGVIEAINEEREANGDYADLLDFCRRIDGRKLNRRVTE 882 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITL 940 +L+ GALD G +R L+ +L + A +KN+ +IF H S + L Sbjct: 883 ALIRGGALDSIGPNRASLMAALGDALMAASQHQKNQATGQVDIFGALDHSNEMASVDVPL 942 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGN 993 K E+ +R E + VLG Y +GHP + + L + K V + RG+ Sbjct: 943 IKEWHEDDKLRAERD--VLGLYLTGHPFNRFARELSAITHKNLHSHVEAVEAQESASRGD 1000 Query: 994 NIR-------LAAMVVSKQQKKTRKGSRIGWVTFSE 1022 + R +A +VV Q K+ G+ + VT + Sbjct: 1001 DFRARAISATVAGLVVDVQSKRFGNGNELLIVTLDD 1036 >gi|94267210|ref|ZP_01290812.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1] gi|93452086|gb|EAT02768.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1] Length = 1174 Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1036 (41%), Positives = 634/1036 (61%), Gaps = 21/1036 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA+ L+ + K A+AITD +F ALEF KA AGI+PI Sbjct: 4 FVHLHVHTQYSMLDGAIRLDRLFAKCREYGMEAVAITDHGAMFGALEFYVKAKKAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ I + + K+ ++LL GYQ L++L + + L+ R Sbjct: 64 IGCEFYI--APDSRRDKSAKSAGAAAHHLMLLAMDQTGYQNLMKLAT-IAQLEGFHYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L L EGLI +T G + A +LF RLY+ +Q ++ Sbjct: 121 IDLEVLA-AHREGLIAMTACLHGKVPSLLVKGDKAGARAEAKRLHELFPGRLYLEMQENQ 179 Query: 191 GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ ++ + +LA ELPLVATN+ +L E+ +AH+VL+ + ++ +DR R Sbjct: 180 IPEQTTVNEGLKELAAELELPLVATNDCHYLDREEAKAHEVLLCIQTGKTMAAQDRFRFA 239 Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D + K+ +EM + F+ P+AL T EIA+RC+ L + + P F D + E Sbjct: 240 TDELFFKSPAEMKAAFAHSPQALAATAEIAQRCNLELDLESHHFPDFPVPTGDTLASLFE 299 Query: 309 NELRNKAVAGL-EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E R L E+R QG + YRQRL+ E++VI +M F GYFLIVADFI WA Sbjct: 300 REARAGLAQRLTEMRDKQGLTVGAELEEQYRQRLEHEIDVINQMGFPGYFLIVADFINWA 359 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K IPVGPGRGSGAGS+ AYA+ ITD+DP+ L+FERFLN +R SMPDFD+DFCQ+RR Sbjct: 360 KDQQIPVGPGRGSGAGSLVAYAMRITDVDPIPHGLIFERFLNIERKSMPDFDVDFCQERR 419 Query: 428 DEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 EVI YVQ+KYG + V QI+T+GS++AKA +RDVGRAL M + + DR+ KLIP++ Sbjct: 420 GEVIDYVQHKYGGQSHVVQIVTYGSMKAKAVVRDVGRALGMSFGEADRIAKLIPDELNIT 479 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +AI + +F+E +P V LL +++ LEGL RH S HAAG+VI RP+ + +P+ Sbjct: 480 LD-KAIDKEPKFKELMKREPQVAELLNVAKVLEGLNRHTSIHAAGVVISPRPMVEYLPLC 538 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 + + ++ +TQ++MK E GLIKFDFLGLKTLT++ ++ + A +VD++ IP DD Sbjct: 539 KGPKGEV-LTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKADLDHEVDIAAIPMDD 597 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 +T+ LL LG+FQLESSGMR L M+P+ D+IALV+LYRPGP+++ +V + N Sbjct: 598 AKTFDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVEDFVN 657 Query: 664 RKNGKEKIVSIHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K+G+ +V+ +PL ++P+LKET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKKI Sbjct: 658 TKHGR--MVAKYPLAQLEPILKETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKKI 715 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E M+ +K +F++G + NGI A IF+L+AKFA YGFNKSH+AAYA+I+YQTAW+K Sbjct: 716 PEVMEAEKGKFMAGCADNGIDPKKAEYIFDLVAKFAGYGFNKSHSAAYALIAYQTAWLKA 775 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP +F+AA ++ +M N +K+ ++ + R+ I+++PP +N DF V D+RI + LAA Sbjct: 776 HYPSQFMAALLSCDMGNTDKVVRYINECREHEIEVLPPDINESFRDFTVIDDRIRFGLAA 835 Query: 842 IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K VG I+E D P+ SL DFC RVD +K+NRRV+ESL+ AGA D G R Q Sbjct: 836 VKNVGGAALDSIIEVRETDGPYQSLSDFCGRVDGRKVNRRVIESLIKAGAFDSLGAKRAQ 895 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSSVRFENEQR 957 L LD AQ +++R + ++FA E+ + I L + + + R E+ Sbjct: 896 LFAILDQAMDQAQATQRDRQSGQISLFAAMPAEQAAQAQNIELPEIAEWDEKQRLLLEKE 955 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +GFY +GHPLD Y+ L + + +R+ ++ + +++KG + + Sbjct: 956 TVGFYLTGHPLDKYRRELSGVIDTDLHDLADWNEQQPVRVGGLIRHCKPHRSKKGDAMAF 1015 Query: 1018 VTFSEPAKEYEANFFP 1033 +T + E FP Sbjct: 1016 LTLEDTLASAEVVIFP 1031 >gi|940886|gb|AAC44578.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae C6706] Length = 1159 Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1050 (41%), Positives = 625/1050 (59%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + LL GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R Sbjct: 114 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + + +A ++LP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ LP F Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFL+V Sbjct: 287 -AIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLVVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIA-EPELKELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + +L+ G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPPYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 AGALD G R ++ S+D+ + A + ++F G +D ++ + Sbjct: 885 AGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQ 940 Query: 945 VEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V VR E E+ LG Y +GHP+D Y L K E+ T R ++ A +V+ Sbjct: 941 VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTAAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E + Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRLEVMLY 1030 >gi|127513548|ref|YP_001094745.1| DNA polymerase III subunit alpha [Shewanella loihica PV-4] gi|126638843|gb|ABO24486.1| DNA polymerase III, alpha subunit [Shewanella loihica PV-4] Length = 1157 Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1054 (41%), Positives = 620/1054 (58%), Gaps = 58/1054 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL K + DQ A+A+TD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121 PI+GC F VP S+ +L EGY+ L L+S YL Sbjct: 64 PIVGCDF-----------------FMLVPGFEDEFCSLTVLAMNNEGYKNLTLLISDAYL 106 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 K I +WL+ +EGLI+L+G G + +A + + + ++ F DR Sbjct: 107 RGHVKDRAVIDQAWLERY-SEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDR 165 Query: 182 LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R D R + V+LA +LP+VATN +F+ E +EAH++ +A++ + Sbjct: 166 YYLELIRTGRPDEERYLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTL 225 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + RPR + Y + + EM +F D+PEAL+N+VEIA+RC+ +++ LP F + Sbjct: 226 ADPRRPRRYSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGD 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRL-------AQGAIAKGYHAQDYRQRLDFELNVIARMK 352 E+ L + GLE RL AQ A +G +Y +RLD EL VI M Sbjct: 286 L-----SIEDFLVEVSKKGLEERLEFLFPDEAQRAERRG----EYDERLDVELTVINNMG 336 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIV +FIQW K N IP+GPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R Sbjct: 337 FPGYFLIVMEFIQWGKDNGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPER 396 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY V Sbjct: 397 VSMPDFDVDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFV 456 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 DR+ K+IP +P ++ +A + EA AD V L+++ + LEG+ R+A HA G+ Sbjct: 457 DRISKMIPAEPGMTLA-KAFEAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGV 515 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF---- 588 VI ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L Sbjct: 516 VIAPTVITDFAPLYCDAEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPH 575 Query: 589 LAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 LA++G + V + I DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV Sbjct: 576 LAKQGKEPVRIEAIVLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALV 635 Query: 648 SLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQ 700 +L+RPGP+ + +V N RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ Sbjct: 636 ALFRPGPLQSGMVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQ 695 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 +L+GY+L AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YG Sbjct: 696 VLAGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYG 755 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSH+AAYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP Sbjct: 756 FNKSHSAAYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLLPPD 815 Query: 821 VNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879 VN F V D+ I Y + AIKGVG I++A D PF L DFC+RVD KKLNR Sbjct: 816 VNKGLFRFTVDDDLNIVYGIGAIKGVGEGPVESILKAREDGPFIDLFDFCARVDLKKLNR 875 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 RV+E L+ AGALD G R ++ +L + I+ Q + +H+ +K Sbjct: 876 RVIEKLICAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDNKQ 935 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 + V E E+ LG Y +GHP++ Y L+ ++ T RG + A Sbjct: 936 QFVHCTPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTTKAA 995 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++GS++G VT + + E F Sbjct: 996 GLVVATRVMMTKRGSKMGLVTLDDKSARLEVMLF 1029 >gi|222056375|ref|YP_002538737.1| DNA polymerase III, alpha subunit [Geobacter sp. FRC-32] gi|221565664|gb|ACM21636.1| DNA polymerase III, alpha subunit [Geobacter sp. FRC-32] Length = 1156 Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1028 (41%), Positives = 631/1028 (61%), Gaps = 23/1028 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +H+ YSLL+GA+ L +++ K+ + PA+AITD N+F A+EF K GI+ Sbjct: 4 PDFVHLHLHTQYSLLDGAIRLGDLIKKVKGYEMPAVAITDHGNMFGAIEFYTKCKDKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127 PIIG ++ I + + +VLL +GY+ L LVS Y +G Sbjct: 64 PIIGSEVYIAPGSRFSKESGNGHESTSSYHLVLLCQNLQGYRNLSWLVSAGY--KEGFYY 121 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI L E +EGLI L+ G + N + A + +LF R Y+ LQ Sbjct: 122 KPRIDKEILAE-HSEGLIALSACLKGEVAYQCGRNRIEDAVATARWYSELFPGRYYIELQ 180 Query: 188 RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + ++ +++++A LPLVATN+ +L+ ED +AH+VL+ + ++ + Sbjct: 181 ENTLPEQDVANKRLLEVASELSLPLVATNDCHYLNREDAKAHEVLLCIQTGKTMNDPNHM 240 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDD 302 + + Y K+ EM + F PEA+ NTV IA C F L P++I +K DD Sbjct: 241 HFSAEEFYFKSPQEMAAAFHYAPEAIANTVRIAESCDFELDFKTYHFPQYIKPADKSLDD 300 Query: 303 IQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + +E+ E L+++ VA VR A+ + Y RL EL+ I +M F GYFLIVA Sbjct: 301 VLEEQAYEGLKDRLVA---VR-AKYPDLTADQEKGYYDRLRIELDCIKQMGFPGYFLIVA 356 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK + IPVGPGRGS AGS+ AY++ ITD+DP+ ++LLFERFLNP+R+SMPD D+D Sbjct: 357 DFINWAKDHGIPVGPGRGSAAGSLVAYSIRITDLDPIPYNLLFERFLNPERISMPDIDVD 416 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVI+YV KYG ++V QIITFG++ A+ LRDVGRAL M Y VDR+ KL+P Sbjct: 417 FCQDRREEVIQYVTEKYGRDKVCQIITFGTMAARGVLRDVGRALDMSYGDVDRIAKLVPE 476 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 ++L+ A+ + + E ADP + LL+++ LEGL RHASTHAAG+V+ L Sbjct: 477 --VLGITLEKALQQEPKLNELAEADPRIKELLDVALCLEGLARHASTHAAGVVVAPDVLE 534 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599 P+Y+D ++ TQ++MK++EK GL+KFDFLGLK LT++ ++ + A + D++ Sbjct: 535 AFCPVYKDQKNGSITTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKLIRAGKNADFDIT 594 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 ++ DD ETY LL + T G+FQLESSGM+ L ++P C EDIIA+ +LYRPGP+ + + Sbjct: 595 VLRDDDEETYKLLQSGNTTGVFQLESSGMQGLLVKLKPSCFEDIIAVCALYRPGPLGSGM 654 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V + +RK+G++K+V P ++P+LK+T GVI+YQEQVMQI+++L+GYSL +AD+LRRAM Sbjct: 655 VDDFIDRKHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQISRVLAGYSLGQADLLRRAM 714 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK E M K+K F++GA K I A IF+L+AKFA+YGFNKSH+AAYA+++YQTA Sbjct: 715 GKKDPEVMAKEKIPFLAGAEKQNIDPKKAEAIFDLMAKFAEYGFNKSHSAAYALVAYQTA 774 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++KTHYPVEF+AA +T +M + +K+ K D R I+++PP +N + F+V N I + Sbjct: 775 YLKTHYPVEFMAALLTEDMGSTDKVIKNISDCRDMGIEVLPPDINASDLSFRVLGNSIRF 834 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L A+K VG + I+EA F + DF RVD +K+N+RV+ESL+ GA D G Sbjct: 835 GLGAVKNVGESAIEAILEARKTGSFADIFDFGERVDQRKVNKRVVESLIKCGAFDSTGAK 894 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVRFEN 954 R L+ L++ Q +++ R + ++F E +G + K +L + Sbjct: 895 RAPLMAGLEDAMSLGQKIQQERESAQVSLFGVEEMTRGNGNGKGSLPDLPEWDDKFLLNQ 954 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LGFY +GHPLD Y +R+ + +++ +VV+K++ T+KG R Sbjct: 955 EKEALGFYITGHPLDRYSAQIRRFASVHTSDFAEIKDKAEVKICGIVVAKKEFITKKGDR 1014 Query: 1015 IGWVTFSE 1022 + +VT + Sbjct: 1015 MAFVTLED 1022 >gi|242240381|ref|YP_002988562.1| DNA polymerase III subunit alpha [Dickeya dadantii Ech703] gi|242132438|gb|ACS86740.1| DNA polymerase III, alpha subunit [Dickeya dadantii Ech703] Length = 1160 Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1053 (41%), Positives = 626/1053 (59%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ K AA PAIAITD NL ++F A AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPAIAITDFTNLCGLVKFYGGAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L +GYQ L L+SR Y G Sbjct: 64 PIIGADFYL----------QSEELGDELARLSVLAMNNDGYQNLTLLISRAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E GL++L+GG G I + + + ++ + +++ F R Y+ L R Sbjct: 114 PTIEREWLVE-HQAGLLLLSGGRQGDIGKFLLRGNQTLVDQCVAFYQQHFPQRFYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + VV LA LP+VATN+ F+SE+D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAVVALATERGLPVVATNDVCFISEDDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEALEN+VEIA+RC+ +++ LP+F D+ E Sbjct: 233 NYSPQQYMRSEQEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQF---PTGDMTTE 289 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR A GLE RL + +Y +RL+ ELNVI +M F GYFLIV +F Sbjct: 290 DYLVLR--AREGLEERLVFLFPDEEERANRRPEYDERLEIELNVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K NN+PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNNVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFAAEPQLGEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K VD+ Sbjct: 527 PLYCDPEGHHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINPRREKQGLEPVDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+ I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA K G+ +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +KI + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L+ +G Sbjct: 827 DAGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRDLFDLCARTDIKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A+ + ++F +T VE S Sbjct: 887 AFDRLGPHRAALMNSLPDAMKSAEQHARAEAIGQSDMFG--------VLTESPEQVEQSY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y K I R G ++ T RG Sbjct: 939 STVPPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGGRLKDMHPTERGKVTIAVG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 999 LVLAARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031 >gi|146292466|ref|YP_001182890.1| DNA polymerase III subunit alpha [Shewanella putrefaciens CN-32] gi|145564156|gb|ABP75091.1| DNA polymerase III, alpha subunit [Shewanella putrefaciens CN-32] Length = 1157 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1051 (41%), Positives = 619/1051 (58%), Gaps = 52/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121 PIIG D MQ VP ++ ++ GYQ L +++S+ YL Sbjct: 64 PIIGA--DFWMQ---------------VPGFEGEFCALTIIAMNNVGYQNLTQIISQAYL 106 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 Q V I WL EG+++L+G G I +A ++ E ++ F +R Sbjct: 107 RGQVAGRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAER 165 Query: 182 LYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 ++ L R D RY VV LA P+VATN +FL ED++AH++ +A+ Sbjct: 166 YFLELIRTGRPDEERYLHMAVV-LAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFT 224 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ RP+ + YL++ EM +F+D+P AL NTVEIA+RC+ ++++ LP F Sbjct: 225 LADPRRPKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPTG 284 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + E+ L + + GLE RLA + +Y +RLD EL VI +M F G Sbjct: 285 DM-----SIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPG 339 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SM Sbjct: 340 YFLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSM 399 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFD+DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 400 PDFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI 459 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP +P ++ +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI Sbjct: 460 SKLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIA 518 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + VK Sbjct: 519 PTKITDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVK 578 Query: 596 -----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+ Sbjct: 579 NGRPPVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638 Query: 651 RPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 RPGP+ + +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LS Sbjct: 639 RPGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLS 698 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GY+L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNK Sbjct: 699 GYTLGGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNK 758 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAYA++SYQT W+KTHYP +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 759 SHSAAYALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNK 818 Query: 824 PCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+ Sbjct: 819 GLFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVI 878 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLE 941 E L+ AGALD G R ++ +L + A K + ++F D K Sbjct: 879 EKLICAGALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFV 938 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + + + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +V Sbjct: 939 ECTPWPDKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLV 998 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V+ + T++GS++G +T + + E F Sbjct: 999 VATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|319425768|gb|ADV53842.1| DNA polymerase III, alpha subunit [Shewanella putrefaciens 200] Length = 1157 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1050 (41%), Positives = 619/1050 (58%), Gaps = 50/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121 PIIG D MQ VP ++ ++ GYQ L +++S+ YL Sbjct: 64 PIIGA--DFWMQ---------------VPGFEGEFCALTIIAMNNVGYQNLTQIISQAYL 106 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 Q V I WL EG+++L+G G I +A ++ E ++ F +R Sbjct: 107 RGQVAGRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAER 165 Query: 182 LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 ++ L R D R + V LA +P+VATN +FL ED++AH++ +A+ + Sbjct: 166 YFLELIRTGRPDEERYLHMAVALAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTL 225 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + RP+ + YL++ EM +F+D+P AL NTVEIA+RC+ ++++ LP F + Sbjct: 226 ADPRRPKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPTGD 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E+ L + + GLE RLA + +Y +RLD EL VI +M F GY Sbjct: 286 M-----SIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGY 340 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP Sbjct: 341 FLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 401 DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP +P ++ +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI Sbjct: 461 KLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAP 519 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + VK Sbjct: 520 TKITDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKN 579 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+R Sbjct: 580 GRPPVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSG Sbjct: 640 PGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSG 699 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKS Sbjct: 700 YTLGGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKS 759 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+KTHYP +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 760 HSAAYALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKG 819 Query: 825 CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E Sbjct: 820 LFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIE 879 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEK 942 L+ AGALD G R ++ +L + A K + ++F D K + Sbjct: 880 KLICAGALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVE 939 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV Sbjct: 940 CTPWPDKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVV 999 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++GS++G +T + + E F Sbjct: 1000 ATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|289208654|ref|YP_003460720.1| DNA polymerase III subunit alpha [Thioalkalivibrio sp. K90mix] gi|288944285|gb|ADC71984.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. K90mix] Length = 1159 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1054 (41%), Positives = 621/1054 (58%), Gaps = 61/1054 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YSL++G + L ++ +A PA+A+TD NLF ++F + A A G+Q Sbjct: 8 PGFVHLRVHSEYSLIDGLVRLKPLVAAVAEKGMPAVAVTDHCNLFGLVKFYRAAIAQGVQ 67 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG L + + +V + LL GY+ L L+SR + Q K Sbjct: 68 PIIGADLLV----------RDARADGSVARMTLLAQNDPGYRNLTRLISRAWQEGQEKGI 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT------FKKLFGDRL 182 RI WL EGLI L+GG G F + S VA R+LT + K F R Sbjct: 118 PRIDAEWLDS-AAEGLIALSGGIDG-----LFVSGSGVA--RVLTHDDLAPWLKRFPGRF 169 Query: 183 YVNLQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R G + + E Q + A ELP+VATN+ FL ED+EAH+ + + T + Sbjct: 170 YLELTRTERPGEEAWIE-QALAAAEQFELPVVATNDVRFLKAEDFEAHEARVCIHDGTTL 228 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 RPR +H YL EM FSD+PEAL N+V IARRCS L + +LP F E Sbjct: 229 DDPSRPRRYSEHQYLATPQEMTERFSDIPEALANSVAIARRCSVSLTLGESVLPDFPVPE 288 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ LR + GLE RL + A+ +Y +RL EL+VI +M F GYFLI Sbjct: 289 GYTV----EDHLRETSAKGLEARLERFQFAE---RSEYEERLKLELDVICQMGFPGYFLI 341 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFIQWAK N IPVGPGRGSGAGS+ AY L ITD+DPLR+ LLFERFLNP+R+SMPDFD Sbjct: 342 VADFIQWAKDNGIPVGPGRGSGAGSLVAYVLGITDLDPLRYELLFERFLNPERVSMPDFD 401 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI YV +YG ++V+QIIT G++ AKA +RD GR L Y VDR+ KLI Sbjct: 402 VDFCMEKRDDVIDYVAERYGRDKVSQIITHGTMAAKAVVRDCGRVLGYGYGFVDRIAKLI 461 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P + + +A+A+ + D V ++++++KLEGL R+A HA G+VI L Sbjct: 462 PFELGMTLD-KALAESEDLKSQYDQDEEVRGIIDLARKLEGLTRNAGKHAGGVVIAPSAL 520 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVD 597 + P+Y + VT F+ +E GL+KFDFLGL+TLT++ +++ + + ++D Sbjct: 521 TDFSPLYCEDDGGSLVTHFDKDDVEAVGLVKFDFLGLRTLTIIDWAVENVRKMDPETRID 580 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L +P DD +T+ LL T +FQLES GM+ + +QPD EDIIALV+LYRPGP+ + Sbjct: 581 LDAVPLDDPDTFKLLKAYQTTAVFQLESGGMKDLIRRLQPDSFEDIIALVALYRPGPLQS 640 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + +RK+G+ ++ HP ++P+L+ T GVI+YQEQVMQIAQ+L+ Y+L AD+LRR Sbjct: 641 GMVDDFIDRKHGRAQVEYPHPDLEPILQPTYGVILYQEQVMQIAQVLANYTLGGADLLRR 700 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ++ F+ GA G+ + A IF+L+ KFA YGFNKSH+AAYA+++YQ Sbjct: 701 AMGKKKPEEMAKQRQIFMEGALGRGVEEGTATYIFDLMEKFAGYGFNKSHSAAYALVAYQ 760 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NR 834 TAW+K HYP F+AA ++ +MDN +K+ ++ R ++++PP VN F D Sbjct: 761 TAWLKAHYPAPFMAAVLSADMDNTDKVVGLIEECRNMGLEVLPPDVNQSDYRFTCRDAGT 820 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + Y L AIKGVG + +++A A D PF L D C RVD KLN+RVLE+LV AGALD Sbjct: 821 VVYGLGAIKGVGESAIETLLKARAVDGPFHGLIDLCQRVDLSKLNKRVLETLVRAGALDA 880 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRF 952 G +R LL + A+ E+N + ++F + TL + ++ R Sbjct: 881 IGANRATLLNDIPTAVAAAEQTERNASLGVVDLFGDPAAAVVPESETLPEMEDDD---RL 937 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--------------GNNIRLA 998 E+ LG Y +GHP++ Y+ L+++ + E A + +R+A Sbjct: 938 RGEKETLGLYLTGHPVERYRAELKRLTGSTFAELEAKLEQRPDEGGQQGRRGRQETVRIA 997 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV + + T+ G R+G T + + E F Sbjct: 998 GLVVGVRVRNTQNG-RMGIATLDDRSGRAEIVLF 1030 >gi|15616854|ref|NP_240067.1| DNA polymerase III alpha chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132275|sp|P57332|DPO3A_BUCAI RecName: Full=DNA polymerase III subunit alpha gi|25288552|pir||A84958 DNA-directed DNA polymerase (EC 2.7.7.7) alpha chain [imported] - Buchnera sp. (strain APS) gi|10038918|dbj|BAB12953.1| DNA polymerase III alpha chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 1161 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1056 (41%), Positives = 641/1056 (60%), Gaps = 59/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL VHS YS+++G +++ K A+ PAIAITD NNL+ ++F A G++ Sbjct: 4 PKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLGLK 63 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125 PIIG ++ D+ +N + + LL ST EGY+ LI L+SR Y +G Sbjct: 64 PIIGITVNFFSDLINN------------QLTKLTLLASTQEGYKNLILLISRAY--QKGY 109 Query: 126 --KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 V I W EI +GLI+L+GG G + + S + L ++K F D Y Sbjct: 110 VHNNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYY 168 Query: 184 VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R +R + V L+ + +P+VATN+ FLS+ED++ H + +A+ ++ Sbjct: 169 LELFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQH 228 Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 K + + +LK EM +FSD+PEAL N+VEIA+RC+ + LP+F + Sbjct: 229 SKIQNNYSNQQFLKTTEEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGKI- 287 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAI----AKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E L +A G++ RL + K ++Q Y RLD EL VI +M F GYF Sbjct: 288 ----SVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQ-YINRLDMELTVINKMGFPGYF 342 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPD Sbjct: 343 LIVMEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPD 402 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC ++RD+VI +V YG VAQIITFG+L AKA +RDVGR L PY +++L K Sbjct: 403 FDIDFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSK 462 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P DP + +A + +S + V L++I++KLEG R+ HA G+VI Sbjct: 463 LVPLDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPT 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQR 592 ++ P+Y D + + PVTQF+ IE GL+KFDFLGL+TLT++ +++ + + Sbjct: 522 KITDFCPLYCDEKGNNPVTQFDKNDIEYIGLVKFDFLGLRTLTIISYAVEMINTKLNLNK 581 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 ++++ IP DD + + LL T G+FQLES GM+ ++ +QPDC ED+IALV+L+RP Sbjct: 582 KRTININSIPLDDAKCFKLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRP 641 Query: 653 GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V N NRK+G+E I H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY Sbjct: 642 GPLQSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGY 701 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAM KK ++M +Q+ F GAS NGI K +++ IF+LL KFA YGFNKSH Sbjct: 702 TLGSADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSH 761 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 + AYA++SYQT W+K+HYP EF+AA+MT ++DN EKI ++ ++I+PP++N Sbjct: 762 SVAYALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSK 821 Query: 826 VDFKVGD-NRIYYSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 +F V D I Y L AIKG+G + + I E +K F L D C R+DS+K+ RRVLE Sbjct: 822 YEFYVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLE 881 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEK 942 L+ +G+ DCF +R LLQS+D+ ++ + ++ K +++F G F +++ ++K Sbjct: 882 KLIMSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLF----GIFQNELNQVKK 937 Query: 943 FSVEN----SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIR 996 ++ N + +NE +VLGFY +GHP++ YK L + + G + S R I Sbjct: 938 NNLVNLVCPEKNKLQNEYQVLGFYLTGHPINQYKKEL-ECYVNGVKLSQLKFIKRNKKIL 996 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++VS + K T+ +RI + + E F Sbjct: 997 VAGIIVSIKIKITKNKNRIAILVLDDNTSRLEVVIF 1032 >gi|323497991|ref|ZP_08103000.1| DNA polymerase III subunit alpha [Vibrio sinaloensis DSM 21326] gi|323317036|gb|EGA70038.1| DNA polymerase III subunit alpha [Vibrio sinaloensis DSM 21326] Length = 1159 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1048 (41%), Positives = 626/1048 (59%), Gaps = 45/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++HS +S+++G + ++ K+A PA+A+TD NL ++F A GI+ Sbjct: 4 PKFVHLRIHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGCGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ +++ ++ + + +L + GY+ L L+S+ YL + Sbjct: 64 PIIGA--DFAMQ-SVEFGDE-------LTKLTVLAADNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG SG I +A + +VA + ++ F DR Y+ L R Sbjct: 114 PVIDKEWLTEL-AEGLIILSGGKSGEIGKALLKGNQKVAHECAEFYQTHFPDRFYLELTR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + ++ + ELP+VATN+ + L + ++AH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALEFSEQVELPVVATNDVVILDDSTFDAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + Sbjct: 231 PKNYSPQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE-----G 285 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361 EE L K+ GLE RL AQ +Y RL EL VI M F GYFLIV Sbjct: 286 MEETEFLVKKSEEGLEERLEFLFPDPEVRAQRRPEYDDRLKIELEVINNMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + E AD V L+++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R + V Sbjct: 525 FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAREGKDPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 AIESIPLDDQASFSLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E + H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREAVSYPDEQWQHDSLKEILEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRATFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECLRMKLKVLPPDINSGLYRFN 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA + D F L DFC+R+D KK+N+RV+E L++ Sbjct: 825 VNEDGEIVYGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIY 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFS 944 AGALD G R ++ SL++ K A + ++F K T K Sbjct: 885 AGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYT--KVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERTTLGLYLTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|157147384|ref|YP_001454703.1| DNA polymerase III subunit alpha [Citrobacter koseri ATCC BAA-895] gi|157084589|gb|ABV14267.1| hypothetical protein CKO_03182 [Citrobacter koseri ATCC BAA-895] Length = 1144 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1041 (41%), Positives = 625/1041 (60%), Gaps = 56/1041 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G + Sbjct: 1 MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGIKPIVGADFHV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +G + + +L + GYQ L L+S+ Y G + I WL E+ Sbjct: 57 ------RGTPLGDELCQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDREWLTEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 +GLI+L+GG G + R+ +S + ++ + +++ F DR Y+ L R R + Sbjct: 110 DGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFSDRYYLELIRTGRQDEETYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA T LP+VATN+ F++ ED++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAETRGLPVVATNDVRFINSEDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEDE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALEN+VEIA+RC+ +++ LP+F + E+ L K+ GL Sbjct: 230 MCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDFLVKKSKEGL 284 Query: 320 EVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375 E RL A+ K Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVG Sbjct: 285 EERLEFLFPDEAVRKEKRPP-YDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 343 Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435 PGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V Sbjct: 344 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 403 Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495 + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP ++ +A + Sbjct: 404 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAE 462 Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PV Sbjct: 463 PQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPV 522 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH 610 TQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D++ IP DD +++ Sbjct: 523 TQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFD 582 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGK 668 +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+ Sbjct: 583 MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 642 Query: 669 EKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK E Sbjct: 643 EEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 702 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY Sbjct: 703 EMAKQRSVFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 762 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAI 842 P EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AI Sbjct: 763 PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 822 Query: 843 KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 KGVG I+EA + D F L D C+R D+KKLNRRVLE L+ +GA D G R L Sbjct: 823 KGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 882 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRF 952 + SL + K A K ++F G ++ E +E S V Sbjct: 883 MNSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVL 934 Query: 953 ENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + E+ LG Y +GHP++ Y K I R +G ++ T RG A +V++ + T++ Sbjct: 935 DGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKR 994 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G+RIG T + + E F Sbjct: 995 GNRIGICTLDDRSGRLEVMLF 1015 >gi|219682166|ref|YP_002468550.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621899|gb|ACL30055.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085980|gb|ADP66062.1| DNA polymerase III alpha chain [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086554|gb|ADP66635.1| DNA polymerase III alpha chain [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 1161 Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1056 (41%), Positives = 641/1056 (60%), Gaps = 59/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL VHS YS+++G +++ K A+ PAIAITD NNL+ ++F A G++ Sbjct: 4 PKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLGLK 63 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125 PIIG ++ D+ +N + + LL ST EGY+ LI L+SR Y +G Sbjct: 64 PIIGITVNFFSDLINN------------QLTKLTLLASTQEGYKNLILLISRAY--QKGY 109 Query: 126 --KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 V I W EI +GLI+L+GG G + + S + L ++K F D Y Sbjct: 110 VHNNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYY 168 Query: 184 VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R +R + V L+ + +P+VATN+ FLS+ED++ H + +A+ ++ Sbjct: 169 LELFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQH 228 Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 K + + +LK EM +FSD+PEAL N+VEIA+RC+ + LP+F + Sbjct: 229 SKIQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFIHSGKYFLPQFRTGKI- 287 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAI----AKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E L +A G++ RL + K ++Q Y RLD EL VI +M F GYF Sbjct: 288 ----SVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQ-YINRLDMELTVINKMGFPGYF 342 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPD Sbjct: 343 LIVMEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPD 402 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC ++RD+VI +V YG VAQIITFG+L AKA +RDVGR L PY +++L K Sbjct: 403 FDIDFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSK 462 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P DP + +A + +S + V L++I++KLEG R+ HA G+VI Sbjct: 463 LVPLDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPT 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQR 592 ++ P+Y D + + PVTQF+ IE GL+KFDFLGL+TLT++ +++ + + Sbjct: 522 KITDFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNK 581 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 ++++ IP DD + ++LL T G+FQLES GM+ ++ +QPDC ED+IALV+L+RP Sbjct: 582 KRTININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRP 641 Query: 653 GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V N NRK+G+E I H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY Sbjct: 642 GPLQSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGY 701 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAM KK ++M +Q+ F GA NGI K +++ IF+LL KFA YGFNKSH Sbjct: 702 TLGSADILRRAMSKKNLKDMSEQRAIFEEGALNNGIDKKLSIKIFDLLEKFAGYGFNKSH 761 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 + AYA++SYQT W+K+HYP EF+AA+MT ++DN EKI ++ ++I+PP++N Sbjct: 762 SVAYALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSK 821 Query: 826 VDFKVGD-NRIYYSLAAIKGVGTTTAR-HIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 +F V D I Y L AIKG+G + + I E +K F L D C R+DS+K+ RRVLE Sbjct: 822 YEFYVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLE 881 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEK 942 L+ +G+ DCF +R LLQS+D+ ++ + ++ K +++F G F +++ ++K Sbjct: 882 KLIMSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLF----GIFQNELNQVKK 937 Query: 943 FSVEN----SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIR 996 ++ N + +NE +VLGFY +GHP++ YK L + + G + S R I Sbjct: 938 NNLVNLVCPEKNKLQNEYQVLGFYLTGHPINQYKKEL-ECYVNGVKLSQLKFIKRNKKIL 996 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++VS + K T+ +RI + + E F Sbjct: 997 VAGIIVSIKIKITKNKNRIAILVLDDNTSRLEVVIF 1032 >gi|237729490|ref|ZP_04559971.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2] gi|226909219|gb|EEH95137.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2] Length = 1160 Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1056 (41%), Positives = 627/1056 (59%), Gaps = 60/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PI+G + + D L + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGADFHVRSELLGDELT-------------QLTVLAANNTGYQNLTLLISKAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F + ++ Sbjct: 111 AEGPVIDRDWLVEL-KEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNCYFLE 169 Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D V LA T LP+VATN+ FL D++AH++ +A+ + Sbjct: 170 LIRTGRQDEENYLHAAVALAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPK 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR +P Y+++ EM +FSD+PEAL+NTVEIA+RC+ +++ LP+F + Sbjct: 230 RPRNYSPQQYMRSEDEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPTGDM--- 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL AQ Y +RL+ EL VI +M F GYFLIV Sbjct: 287 --TTEDFLVAKSREGLEERLEFLFPDPEVRAQKRPPYDERLEVELKVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 DFCMEKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 524 DFAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 584 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ LSGY+L Sbjct: 644 QSGMVDNFIDRKHGREEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F GA K G+ +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKKPEEMAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 764 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 823 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D+ I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L+ Sbjct: 824 HVNDDGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL++ K A K ++F G ++ E +E Sbjct: 884 MSGAFDRLGPHRAALMNSLNDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIE 935 Query: 947 NS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996 S V + E+ LG Y +GHP++ Y K I R +G ++ T RG Sbjct: 936 QSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTT 995 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +V++ + T++G+RIG T + + E F Sbjct: 996 AAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|332042050|gb|EGI78388.1| DNA polymerase III, alpha subunit [Hylemonella gracilis ATCC 19624] Length = 1178 Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1007 (42%), Positives = 601/1007 (59%), Gaps = 39/1007 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +PSF HL++H+ +S+++GA +++++ A D QPA+AITD NNLF A++F + A G+ Sbjct: 3 TPSFAHLRLHTEFSVVDGATRVDDVVATAAKDGQPALAITDLNNLFGAIKFYKAARGKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P+IG ++ + G P T ++LLV +GY L EL++R + + K Sbjct: 63 KPVIGA--------DIVLEGLGTDPLAT-SRLLLLVQNKQGYLNLSELLARAWTGNVHKA 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + L+WL+E+ EGLI+L+G +G + +A + A L F LF R Y+ LQ Sbjct: 114 QAIVKLAWLKEL-HEGLIVLSGAQTGAVGQALVQGDTARAHDLALQFATLFPHRFYLELQ 172 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R D + VQLA +LP+VAT+ FL+EEDYEAH+ + +A ++ R Sbjct: 173 RAGRADDEVHVNAAVQLAARLKLPVVATHPVQFLTEEDYEAHEARVCIAEGEILGNPRRV 232 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + Y K+ ++M ++F+DLP AL NT+EI +RC+ L + P LP F + Sbjct: 233 RKFTKEQYFKSAAQMQALFADLPSALANTLEIGKRCNLTLVLGKPQLPNFPIPGGLSM-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ R ++ GLE RL+ + Y +RL+FE+N I +M F GYFLIV D Sbjct: 291 --EDYFRKVSLEGLEERLSHLYPEPAKRDAERPRYLERLEFEINTILKMGFPGYFLIVGD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FIQWAKANGCPVGPGRGSGAGSLVAYALKITDLDPLAYKLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI YV+ +YG E V+QI TFG++ A+AA+RDVGR + M Y+ D + KLIPN Sbjct: 409 CQANRDRVIEYVKERYGREAVSQIATFGTMAARAAIRDVGRVMDMSYTFCDGISKLIPNK 468 Query: 483 PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P +++ AI + E + + V LLE++QKLEG+ R+ HA G++I L+ Sbjct: 469 PGQHITIDGAIKEVPELAERQAKEDEVKNLLELAQKLEGMTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDL 598 P+Y+ SD V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ +R Sbjct: 529 FCPLYQQPGSDAAVSQYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMKRHPGQEHFSF 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD TY L T +FQ ES GM+ L +P +ED+IAL +LYRPGP+D I Sbjct: 589 EAIPLDDKATYQLFQDGKTEAVFQFESRGMQGMLRDAKPTRLEDLIALNALYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+E+I HPL+ ML ET G+++YQEQVMQ AQ+L GYSL AD+LRRAMG Sbjct: 649 PSFVARKHGREEIEYPHPLVADMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM + +E F GA++NGI++ A IF+L+ KFA YGFNKSHAAAY++++Y TAW Sbjct: 709 KKKAEEMAQHREIFRKGAAQNGIAQDKADEIFDLMEKFAGYGFNKSHAAAYSLLAYHTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYY 837 +K HY EF A+MT+EMD+ +K+K +DA++ + PP VN F+ V D I Y Sbjct: 769 LKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKMGMHFEPPDVNRGHYRFEPVSDTVIRY 828 Query: 838 SLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKKLNRRVLESLVF 887 L A+KG G I+ A + PF SL DFC RVD ++N+R +E+L+ Sbjct: 829 GLGAVKGTGQQAIEAIVAAREGRGEGPAGSECGPFKSLYDFCKRVDRARINKRTVEALIK 888 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDKITLEKFSVE 946 AGA D +R +LL S D +A N ++ A + G T E VE Sbjct: 889 AGAFDSLHLNRAELLASTDRAFDFAAATAANANQGGLFDLMADDGGDSHGSSTQEPELVE 948 Query: 947 ----NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 R +E+ +GFYFSGH D +R+ + E + T Sbjct: 949 ALPWGVKERLSHEKTAVGFYFSGHLFDEVAHEVRRFAKRELAELIDT 995 >gi|300724779|ref|YP_003714104.1| DNA polymerase III subunit alpha [Xenorhabdus nematophila ATCC 19061] gi|297631321|emb|CBJ92016.1| DNA polymerase III, alpha subunit [Xenorhabdus nematophila ATCC 19061] Length = 1160 Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1049 (41%), Positives = 628/1049 (59%), Gaps = 46/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K+A PA AITD NL ++F A +AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKVAKLGMPAFAITDFTNLCGLVKFYGSAHSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D ++ +L + +L EGYQ L L+S Y G Sbjct: 64 PIIGA--DFYVESDLLGDEYAH--------LTVLACNNEGYQNLTLLISESYQKGYGAVG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL++ + GLI+L+GG G + + + + E+ L +++ F + Y+ L R Sbjct: 114 PTIKREWLEKY-SAGLILLSGGRMGDVGKFLLRGNRAMVEQCLDFYQEHFPNSYYLELIR 172 Query: 189 HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D V+LA LP+VATN+ FL ED++AH++ +A+ ++ RP+ Sbjct: 173 TGRLDEENYLHAAVELAAEKNLPVVATNDVCFLESEDFDAHEIRVAIHDGYTMADPKRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL++ EM +FSD+PEAL+N+VEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYLRSEQEMCELFSDIPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL AQ +Y RLD ELNVI +M F GYFLIV +F Sbjct: 288 TEDFLVEKSKQGLEERLEFLYPDPEIRAQKRPEYDDRLDIELNVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + IA + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLEKAFIA-EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D+ Sbjct: 527 PIYCDPEGQNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMVNARRAKKDLEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDQKSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F +G+ K G++ +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKQPEEMAKQRSVFEAGSIKQGVNGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I+EA F L D C+RVD+KK+NRRV+E L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIEARQKAGHFKELFDLCARVDTKKINRRVMEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL++ K A K ++F G ++K + + ++ Sbjct: 887 AFDRLGPHRAALMSSLEDAFKAADQHAKAEATGQTDMF----GVLAEKPEQVEHAYASTP 942 Query: 949 ----SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y K I R ++ T RG + +V++ Sbjct: 943 KWPDQVVLDGERETLGLYLTGHPITSYLKEIERYTNGMRLKDVNPTPRGQVTTVVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 SKILTTKRGNRIGISTLDDRSGRLEIMLF 1031 >gi|254228403|ref|ZP_04921829.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp. Ex25] gi|262393535|ref|YP_003285389.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25] gi|151938991|gb|EDN57823.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp. Ex25] gi|262337129|gb|ACY50924.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25] Length = 1159 Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1048 (41%), Positives = 626/1048 (59%), Gaps = 45/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + I+ K+A PA+A+TD NL ++F A +G++ Sbjct: 4 PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + G+ + + LL + GY+ L L+S+ YL + Sbjct: 64 PIIGA--DFKMQSD----EFGEE----LTQVTLLAADNVGYKNLTLLISKAYLRGHVQHH 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E+ +EGLI+L+GG SG I R + Q+ + + +K+ F DR Y+ L R Sbjct: 114 PVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYLELLR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA +LP+VATN +FLS + ++AH++ +A+ + RP+ Sbjct: 173 TGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + + Sbjct: 233 NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----K 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV +F Sbjct: 288 ETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KLIP DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + E AD V L+++ LEG R+A HA G+VI ++ Sbjct: 468 GMTLD-KAFKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R + V + Sbjct: 527 PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP +D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 ESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + L T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F V Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVD 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +N I Y + AIKGVG I+EA + F L DFC+RVD K++N+RV+E L++AG Sbjct: 827 ENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIYAG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFS 944 ALD G R ++ SL++ K A + ++F G +D + + Sbjct: 887 ALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMF----GVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|269966266|ref|ZP_06180355.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 40B] gi|269829181|gb|EEZ83426.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 40B] Length = 1159 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1048 (41%), Positives = 626/1048 (59%), Gaps = 45/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + I+ K+A PA+A+TD NL ++F A +G++ Sbjct: 4 PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + G+ + + LL + GY+ L L+S+ YL + Sbjct: 64 PIIGA--DFKMQSD----EFGEE----LTQVTLLAADNVGYKNLTLLISKAYLRGHVQHH 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E+ +EGLI+L+GG SG I R + Q+ + + +K+ F DR Y+ L R Sbjct: 114 PVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYLELLR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA +LP+VATN +FLS + ++AH++ +A+ + RP+ Sbjct: 173 TGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + + Sbjct: 233 NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----K 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV +F Sbjct: 288 ETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KLIP DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + E AD V L+++ LEG R+A HA G+VI ++ Sbjct: 468 GMTLD-KAFKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R + V + Sbjct: 527 PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP +D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 ESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + L T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F V Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVD 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +N I Y + AIKGVG I+EA + F L DFC+RVD K++N+RV+E L++AG Sbjct: 827 ENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIYAG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFS 944 ALD G R ++ SL++ K A + ++F G +D + + Sbjct: 887 ALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMF----GVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|308048684|ref|YP_003912250.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799] gi|307630874|gb|ADN75176.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799] Length = 1165 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1059 (41%), Positives = 618/1059 (58%), Gaps = 60/1059 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + +L ++A PA+A+TD NL ++F A +GI+ Sbjct: 4 PKFIHLRVHSDFSMVDGLAKVGPLLKRVAELGMPAVALTDQTNLCGLVKFYSGAHGSGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D M L+ Q + +V+L GY L EL+SR YL Sbjct: 64 PIIGA--DFWMLSPLQGDEQSR--------LVVLAMNNTGYANLTELISRAYLRGHVDHR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL+E+G EGLI+L+G G + +A + +A + ++ F DR YV L R Sbjct: 114 PVIDREWLEELG-EGLILLSGAKDGELGKALVKGNLAMAREIASFYQTHFPDRYYVELHR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D V A LPLVATN +FL +ED+E H++ + + + RPR Sbjct: 173 TGRADDESYLHSAVDFADEMGLPLVATNEVVFLQKEDFEFHEIRVCIHDGYPLDDARRPR 232 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + YL++ EM +F+D+PEAL+N+VEIA+RC+ +++ LP F + + Sbjct: 233 LYSEQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPDFPTGDL-----K 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L + GLE RL + Y +RL EL VI M F GYFLIV +F Sbjct: 288 IEDFLVKVSEEGLEERLEFLFPDPEERAAKRPAYDERLKIELEVINNMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRRDEVI + YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KLIP DP Sbjct: 408 MDRRDEVIEHTAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPFGFVDRISKLIPGDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + +E D V L++I++KLEG R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEVEPQLQEVYDGDEEVRTLIDIARKLEGTTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++Q +LD L A+ V + Sbjct: 527 PLYCDDEGKHPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMLNPALEAKGKAPVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD ++ LL T +FQLES GM++ + ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 ESIPLDDPRSFELLQRSETTAVFQLESRGMKELISRLKPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDETWQHESLKPILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT WMKTH+P F+AA M+ +MDN +K+ + + + ++PP VN F V Sbjct: 767 VSYQTLWMKTHFPSYFMAAVMSADMDNTDKVVTLVDECNRMGLPVLPPDVNQGLYKFNVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I Y + AIKGVG I+ A F L DFC+RVD KK+NRR +E L+ AG Sbjct: 827 EKEEIVYGIGAIKGVGEGPVDEILAARERGGKFLDLFDFCNRVDLKKVNRRTIEKLILAG 886 Query: 890 ALDCFG-------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 A+D G R L+ +L+ K A +N +++F GT +T E Sbjct: 887 AMDNLGPRLPDGAPHRASLMATLEEAMKSAAQNARNLAQGMDDLF----GT----LTPEP 938 Query: 943 FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 +S V+ + E+ LG Y +GHP++ Y L+K ++ T RG Sbjct: 939 EQAHHSFVKVAPWSDKEWLDGERETLGLYLTGHPINQYLKELKKFTAGRLKDVSPTGRGK 998 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R A +V++ + T++GS++G T + + E F Sbjct: 999 TTRAAGLVIASRIMITKRGSKMGIFTLDDKSGRLEVMLF 1037 >gi|253687352|ref|YP_003016542.1| DNA polymerase III, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753930|gb|ACT12006.1| DNA polymerase III, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1160 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1049 (41%), Positives = 622/1049 (59%), Gaps = 46/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ K AA PA+AITD NL ++F A AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG ++ D L + + +L EGYQ L L+S+ Y G Sbjct: 64 PIIGADFCVE-SDELG---------DELAHLTILAMNNEGYQNLTLLISQAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG G + R + AE+ L +++ F R Y+ L R Sbjct: 114 PTIDRNWLIE-HREGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEYFPQRYYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA H LP+VATN F+S +D++AH++ +A+ + RPR Sbjct: 173 TSRPDEESYLHAAVELATKHGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L + GLE RL + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVECSKKGLEERLEFLFPDPEVRAARRPEYDERLDIELGVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D+ Sbjct: 527 PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM KQ+ F GA G++ +AV IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKNPVEMAKQRGGFEDGAKARGVNGELAVKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 A D G R L+ SL + K A K ++F G ++ + S Sbjct: 887 AFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYSTVP 942 Query: 948 ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y K I R G ++ T RG +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031 >gi|317152330|ref|YP_004120378.1| DNA polymerase III subunit alpha [Desulfovibrio aespoeensis Aspo-2] gi|316942581|gb|ADU61632.1| DNA polymerase III, alpha subunit [Desulfovibrio aespoeensis Aspo-2] Length = 1173 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1050 (41%), Positives = 626/1050 (59%), Gaps = 42/1050 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA+ +N++L + PA+AITD ++F A+ F +A A GI+PI Sbjct: 4 FVHLHVHSEYSLLDGAIRINDLLARAKDLGMPAVAITDHGSMFGAMTFYTEALAMGIKPI 63 Query: 71 IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IGC++ + D+ D + K+ +VLL GY+ LI+LV+ YL +G Sbjct: 64 IGCEVYVAPGDIDDAHAHEVKDKS---GGYHLVLLAKNRIGYKNLIKLVTTGYL--EGFY 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 +L + EGLI L+ +G + R + ++ +F Y+ LQ Sbjct: 119 YKPRVSKYLLKQHAEGLIALSACLAGEVPRMLMNEGLEAGAAMAGEYESIFPGNFYLELQ 178 Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + + R +++ ++ A LPLVATN+ +L+ EDYEAHD L+ + T V + R Sbjct: 179 DNGIGKQTRLNELLIKCAEKTGLPLVATNDCHYLTAEDYEAHDTLLCIQTQTTVDAEKRF 238 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQ 304 R+ T + Y K EM F+ +PEA+ NT IA RC+ +++ + P + + + DI Sbjct: 239 RMDTRELYFKTPEEMEQAFAHVPEAIANTQRIAERCNLEIELGSYYFPEYELSEGVADIN 298 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 +E E R GL RLA AI Y +RLD+EL VI +M F YFLIV DFI Sbjct: 299 EEFEKLCRE----GLRKRLA--AIPYPVDEAVYWKRLDYELGVIIKMGFPAYFLIVQDFI 352 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK N IPVGPGRGS AGS+ A++L IT++DPL + LLFERFLN +R+SMPD D+DFC+ Sbjct: 353 NWAKDNRIPVGPGRGSAAGSIVAWSLRITNLDPLPYDLLFERFLNVERISMPDIDVDFCE 412 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR EV++Y +KYGH+RVAQI TFG+++ KA ++DVGRAL M + + DR+ KLIP DP Sbjct: 413 RRRLEVVKYCADKYGHDRVAQITTFGTMKTKAVIKDVGRALGMTFGETDRIAKLIPEDPG 472 Query: 485 HPVSL-----------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 L A+ + DP V +L++IS +LEGL RHASTHAAG+V Sbjct: 473 VMAKLLGVEKAKISVPNAVKAVIELDDMVATDPRVAKLIDISTRLEGLCRHASTHAAGVV 532 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I DRP+++ +P+Y+ + ++ VTQF+MK +EK GLIKFDFLGL+T+T+++ LD + ++G Sbjct: 533 ISDRPMTEFLPLYKGKKGEI-VTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQG 591 Query: 594 VKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 DL + DD TY + T GIFQ+ESSGMR+ L ++P+C EDIIA+++LYRP Sbjct: 592 KHAPDLDTLALDDPATYDIFAKGDTDGIFQVESSGMRKYLRMLRPNCFEDIIAMLALYRP 651 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+ +V + RK+G+ + HP ++ LK T GV++YQEQVM A +++ YSL E Sbjct: 652 GPLGMGMVDEFIKRKHGEVAVSYPHPSLEDTLKPTYGVMVYQEQVMATAMIIANYSLGEG 711 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKI EEM Q+ RF+ GA +N I + +A IF+ + KFA YGFNKSH+AAYA Sbjct: 712 DLLRRAMGKKIAEEMAMQRARFLEGARENKIDEAVANAIFDTMEKFAAYGFNKSHSAAYA 771 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +ISY TA++K H+PVEF+AA M+ EM+N EKI + R +I + P +N F V Sbjct: 772 LISYHTAYLKAHFPVEFMAALMSTEMNNTEKIVMYINACRDMDITVKQPDINAGQARFSV 831 Query: 831 GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I +++AAIK VG I+ E A PF + FC R++ +++ +RVLESL+ AG Sbjct: 832 LDGDILFAMAAIKNVGEEAINEIVAERVAGGPFKDIFAFCERINLRRVTKRVLESLIKAG 891 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKF 943 ALDCF SR LL+ L+ + Q K + + ++ G + + E+F Sbjct: 892 ALDCFSCSRAALLEDLEKAVGFGQKKAKEKESGMLSMLDMLGGASAQAAHTPTCSSCEEF 951 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E E+ VLGF+ SGHPL Y+ L ++ E+ + G +R+A ++ Sbjct: 952 ---DDREKLEMEKEVLGFFLSGHPLLAYRHELARLRTATLEDCKSMPNGTEVRVAVIIPD 1008 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q T+KG + + T + E P Sbjct: 1009 YKQFITKKGDPMAFCTAEDLTTSGEITMLP 1038 >gi|51245515|ref|YP_065399.1| DNA polymerase III, alpha subunit [Desulfotalea psychrophila LSv54] gi|50876552|emb|CAG36392.1| related to DNA polymerase III, alpha subunit [Desulfotalea psychrophila LSv54] Length = 1199 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1052 (41%), Positives = 638/1052 (60%), Gaps = 46/1052 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F HL VH+ YSLL+GA+ L +++DK ++AITD ++ ALEF KA AGI Sbjct: 25 SAGFTHLHVHTQYSLLDGAIRLPDLIDKCKEFGMDSVAITDHGAMYGALEFYTKAKKAGI 84 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +PI+G +L I DM++ K+ Q T IVLL GYQ L+++ S + D Sbjct: 85 KPIVGSELYIAPGDMREQKKINGQ------TAYHIVLLAMNKTGYQNLMKMAS-IAQSDG 137 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI ++ LQE EG+I LT G + A K+ +FGDRLY Sbjct: 138 FYYKPRIDMAVLQEY-NEGIIALTACLHGQVPYLIMKGDMDGARKKAQELHDIFGDRLYF 196 Query: 185 NLQRHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 LQ + E Q V LA + LVATN+ +L+ ++ AH+VL+ + Sbjct: 197 ELQE----NSIAEQQPVNAGLKILAKEMGVKLVATNDCHYLNRQEAHAHEVLLCIQMGKT 252 Query: 240 VSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ +R R + D Y K+ EM F PEA+ +T EIA RC+ L P F Sbjct: 253 INDTNRFRFSSDEFYFKSPKEMERAFHHCPEAIASTQEIADRCNLELTFDDYYFPNFPVP 312 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSG 355 E + + GLE R + Y + Y+ RL+ E++VI M F G Sbjct: 313 EGESLS----TMFTTACWEGLETRFEEMRALGSYKDNTEKTYKARLEMEIDVINTMGFPG 368 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK +IPVGPGRGSGAGS+ AYA+ IT+IDP+ + L+FERFLN +R SM Sbjct: 369 YFLIVADFINWAKSKDIPVGPGRGSGAGSIAAYAMKITNIDPMPYGLIFERFLNIERKSM 428 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 PDFDIDFCQDRR EVI YV+ KYG E VAQIIT+GS++A+ +RDVGRAL +P+++VDR Sbjct: 429 PDFDIDFCQDRRGEVIDYVRRKYGGAEHVAQIITYGSMKARGVIRDVGRALDIPFTEVDR 488 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 + KL+P D L+A+A++ + +EA DP + L+ +S+ LEGL RH S HAAG+VI Sbjct: 489 IAKLVP-DQLKMTLLKALAEEPKLQEAADNDPQIQELISVSKTLEGLARHTSVHAAGVVI 547 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593 P++ +P R +D VTQ++MK E GLIKFDFLGLKTLT++ K++ + A + Sbjct: 548 SPEPMTHYLPTCRGGEADERVTQYDMKHTEMTGLIKFDFLGLKTLTVIDKAVKHVHADKK 607 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + +++ IP DD +T+ LL LG+FQLES GMR+ L M P+ D+IALV+LYRPG Sbjct: 608 IPLNIDAIPMDDPKTFDLLCRGDALGVFQLESEGMRELLVKMAPEQFSDLIALVALYRPG 667 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+D+ +V + K+G+ + P + P+L+ET GVI+YQEQVM+IA +L+ YSL +AD Sbjct: 668 PLDSGMVDDFVETKHGRAEANYPLPQLKPVLEETYGVIVYQEQVMKIASILANYSLGDAD 727 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKKI MD++K +F+ GA KN + A +F+L+AKFA YGFNKSH+AAYA+ Sbjct: 728 ILRRAMGKKIAAVMDEEKVKFMEGAEKNEVPLDKAEYVFDLMAKFAGYGFNKSHSAAYAL 787 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQTA++K H+P +F+AA ++ +M+N +K+ ++ + ++ +I+++PP +N DF V Sbjct: 788 VSYQTAYLKAHHPAQFMAALLSCDMNNTDKVVRYINECKEQHIEVLPPDINESFKDFTVI 847 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 ++RI + +AA+K VG I+E AD P+ S+ DFC+RVDS+K+N RV+ESLV +G+ Sbjct: 848 NDRIRFGMAAVKNVGGAALDSIIEERQADGPYTSISDFCNRVDSRKVNSRVIESLVKSGS 907 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---------ITLE 941 D GY R Q ++ L+ + A+ V++++ + ++FA + + K +E Sbjct: 908 FDSLGYKRSQFIEVLEKAMEQAKAVQRDKQSGQISLFAVAQPSAGQKDQEVNSLHMPDME 967 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 ++S + + FE E +GFY +GHPLD P L+ + + V +R+ +V Sbjct: 968 EWS-DKQKLLFEKE--TVGFYITGHPLDDVMPELKTIIDAQIHDLVDKDEDQAVRIGGLV 1024 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ +++KG + ++T + + E FP Sbjct: 1025 RTYKKHRSQKGDAMAFITIEDIFEAVEVVVFP 1056 >gi|254796559|ref|YP_003081395.1| DNA polymerase III subunit alpha [Neorickettsia risticii str. Illinois] gi|254589796|gb|ACT69158.1| DNA polymerase III subunit alpha [Neorickettsia risticii str. Illinois] Length = 1060 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/953 (45%), Positives = 605/953 (63%), Gaps = 70/953 (7%) Query: 32 ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91 I+D A PA+A+TD + + ALEF++ A A+GIQPIIG L I Sbjct: 10 IVDLARAAGMPAVALTDIDTMAGALEFAEYAKASGIQPIIGVDLSISHN----------- 58 Query: 92 PFPTVPSIVLLVS-TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT--EGLIMLT 148 V S +LL++ EGY+ +I+L G S+R L E+ T +GLI+L Sbjct: 59 ---RVDSRLLLIAKNEEGYRNMIKL--------SGIVSLRRV--ALNEVFTYSKGLILLL 105 Query: 149 GGSSGPIDRAFFFNS----SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLA 204 G FF ++ S AE + K++F L++ +QR ++ E +++QL Sbjct: 106 G--------EFFIDAINSYSIDAETLVSDLKQVFDKDLFIEIQRLG--NQSAEEKLIQLG 155 Query: 205 YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264 Y H +P VATN+ LF + EAHDVL + T V+ +R +P+ Y K+ EMV++F Sbjct: 156 YKHNIPFVATNDVLFPDTDFREAHDVLTCIGSLTYVNDINRIHYSPESYFKSTEEMVALF 215 Query: 265 SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324 +DL EAL NTV IARRCSF+ +V +PILP+F EC + +E +ELR + AGL+ R+ Sbjct: 216 ADLKEALHNTVLIARRCSFMPEVRSPILPKF---EC---EMDESDELRRLSYAGLQRRMG 269 Query: 325 QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 Q+Y RL++EL +I M ++GYFLIVADFI W+K N I VGPGRGSG GS Sbjct: 270 ADV------PQNYLDRLEYELGIIIDMNYAGYFLIVADFICWSKANGIVVGPGRGSGVGS 323 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 + A+ L IT +DPL+F+L FERFLNP R+SMPDFD+DFCQ++R VI YV+ KYGH VA Sbjct: 324 IVAWCLGITGLDPLKFALFFERFLNPVRVSMPDFDVDFCQEKRHLVIEYVRKKYGH--VA 381 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARL 503 QI+TFG+LQ +AALRDVGR LQ+PY +VDR+CK+IPN+PA+P+SLQ AI D ++ Sbjct: 382 QIMTFGTLQPRAALRDVGRVLQLPYGRVDRICKMIPNNPANPISLQEAINLDKDLQKESE 441 Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563 D S+ +LL+++ KLEG RHASTHAAGIVI D P+ +P+Y D SD+PVTQ++MK++ Sbjct: 442 NDESIAKLLDLALKLEGTLRHASTHAAGIVISDTPIDDYLPIYHDKESDIPVTQYSMKYV 501 Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 EKAGLIKFDFLGLKTLT++ ++ + + D+ IP DD TY LL+ +G+FQL Sbjct: 502 EKAGLIKFDFLGLKTLTVINQACSLVRLKNPNFDIDSIPLDDKRTYDLLSAGNAIGVFQL 561 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 +++ M + L+ + PDC EDIIAL+SL RPGP+ NI Y RK+ KE + HPL++ LK Sbjct: 562 DNAYMCETLKRLHPDCFEDIIALISLNRPGPMANIPTYIARKHRKEAVKYPHPLLESSLK 621 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET GV+IYQEQVM++ +LL+GY+L+EAD+LRR MGKKI+ EM +Q E+F+ GA +NGI Sbjct: 622 ETFGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKIRAEMSEQAEKFVEGAKRNGIDT 681 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 A IFE++ KFA YGFNKSHAAAYA+ISYQTA++K ++P+EF A++ LE+ + +K+ Sbjct: 682 ERAREIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKANFPLEFTTAALNLELHHTDKLA 741 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863 QDA+ I I+PP +N + F + DN I YSLAA+K VG A I + S PF Sbjct: 742 ILIQDAKNCGITILPPDINKSKIFFSIEDNAIRYSLAALKNVGEAAASAIQKRS---PFK 798 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 ++ + +D K ++R+ +ESL+ +GALD R L L ++ V K Sbjct: 799 TIAELQRCLDGKMVHRKAVESLIKSGALDVLSPERSGLYSCLKDL------VGKEDDGAQ 852 Query: 924 ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 +F E + T++ + N R + E GF+ HPL Y+ L+ Sbjct: 853 MTLF--EIAATKPEKTVKPW---NFFERTQCEFDAFGFFLYDHPLFPYRKFLK 900 >gi|91223488|ref|ZP_01258753.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 12G01] gi|91191574|gb|EAS77838.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 12G01] Length = 1159 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1048 (41%), Positives = 626/1048 (59%), Gaps = 45/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + I+ K+A PA+A+TD NL ++F A +G++ Sbjct: 4 PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + G+ + + LL + GY+ L L+S+ YL + Sbjct: 64 PIIGA--DFKMQSD----EFGEE----LTQVTLLAADNVGYKNLTLLISKAYLRGHVQHH 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E+ +EGLI+L+GG SG I R + Q+ + + +K+ F DR Y+ L R Sbjct: 114 PVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQLVQGCVDFYKQHFPDRFYLELLR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA +LP+VATN +FLS + ++AH++ +A+ + RP+ Sbjct: 173 TGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + + Sbjct: 233 NYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----K 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV +F Sbjct: 288 ETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KLIP DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + E AD V L+++ LEG R+A HA G+VI ++ Sbjct: 468 GMTLD-KAFKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R + V + Sbjct: 527 PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP +D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 ESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + L T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F V Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVD 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +N I Y + AIKGVG I+EA + F L DFC+RVD K++N+RV+E L++AG Sbjct: 827 ENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIYAG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFS 944 ALD G R ++ SL++ K A + ++F G +D + + Sbjct: 887 ALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMF----GVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|253988140|ref|YP_003039496.1| DNA polymerase III subunit alpha [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779590|emb|CAQ82751.1| dna polymerase iii alpha subunit [Photorhabdus asymbiotica] Length = 1160 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1049 (41%), Positives = 622/1049 (59%), Gaps = 46/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ K+A PA AITD NL + F A AG++ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTSPLVKKVAQLGMPAFAITDFTNLCGLVRFYGSAHGAGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D M+ L ++ +L GY L L+S Y G Sbjct: 64 PIIGA--DFYMESELLGDEYA--------NLTILARNNTGYHNLTLLISEAYQQGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL EGLI+L+GG G + + + + ++ L +++ F D Y+ L R Sbjct: 114 PTIKQKWLVS-RKEGLILLSGGRMGDVGKFLLRGNRAMVDQCLEFYQEHFPDCYYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D V LA LP+VATN+ F+ +ED++AH++ +A+ ++ RP+ Sbjct: 173 TGRVDDENYLHAAVALATEKNLPVVATNDVCFIDKEDFDAHEIRVAIHDGYTLADPKRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL++ EM +FSD+PEALEN+VEIA+RC+ +++ LP+F E Sbjct: 233 NYSPQQYLRSEQEMCELFSDIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 EN L K+ GLE RL + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TENYLIEKSKQGLEERLTFLYPDPEVRAEKRPEYDERLDVELRVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDLVIDHVADIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFVAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D+ Sbjct: 527 PLYCDPEGLNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKGLEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP +D++++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLNDNKSFDMLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA K GI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEEGAKKLGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLIDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA D F L D C+RVD+KKLNRRV+E L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARKKDGYFRELFDLCARVDTKKLNRRVMEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D G R L+ SL++ K A K ++F G ++ + S N S Sbjct: 887 AFDRLGPHRAALMSSLEDALKAADQHAKAEAIGQTDMF----GVLAEAPEEVERSYANVS 942 Query: 950 -----VRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y K I R ++ T RG + +V++ Sbjct: 943 QWPEQVVLDGERETLGLYLTGHPITRYLKEIERYTNGLRLKDVNPTPRGQVTTVVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 SKVIMTKRGNRIGLCTLDDRSGRLEVMLF 1031 >gi|120599537|ref|YP_964111.1| DNA polymerase III subunit alpha [Shewanella sp. W3-18-1] gi|120559630|gb|ABM25557.1| DNA polymerase III, alpha subunit [Shewanella sp. W3-18-1] Length = 1157 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1050 (41%), Positives = 617/1050 (58%), Gaps = 50/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121 PIIG D MQ VP ++ ++ GYQ L +++S+ YL Sbjct: 64 PIIGA--DFWMQ---------------VPGFEGEFCALTIIAMNNVGYQNLTQIISQAYL 106 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 Q V I WL EG+++L+G G I +A ++ E ++ F +R Sbjct: 107 RGQVAGRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAER 165 Query: 182 LYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 ++ L R D R + V LA P+VATN +FL ED++AH++ +A+ + Sbjct: 166 YFLELIRTGRPDEERYLHMAVALAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFTL 225 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + RP+ + YL++ EM +F+D+P AL NTVEIA+RC+ ++++ LP F + Sbjct: 226 ADPRRPKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPTGD 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E+ L + + GLE RLA + +Y +RLD EL VI +M F GY Sbjct: 286 M-----SIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGY 340 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP Sbjct: 341 FLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 401 DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP +P ++ +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI Sbjct: 461 KLIPPEPGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAP 519 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + VK Sbjct: 520 TKITDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKN 579 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+R Sbjct: 580 GRPPVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSG Sbjct: 640 PGPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSG 699 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKS Sbjct: 700 YTLGGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKS 759 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 760 HSAAYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKG 819 Query: 825 CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E Sbjct: 820 LFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIE 879 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEK 942 L+ AGALD G R ++ +L + A K + ++F D K + Sbjct: 880 KLICAGALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVE 939 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV Sbjct: 940 CIPWPDKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVV 999 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++GS++G +T + + E F Sbjct: 1000 ATRVMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|300715411|ref|YP_003740214.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661] gi|299061247|emb|CAX58356.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661] Length = 1160 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1057 (41%), Positives = 629/1057 (59%), Gaps = 62/1057 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G ++ K A+ PAI ITD NL ++F A G++ Sbjct: 4 PRFIHLRVHSDYSMVDGLAKTGPLVKKAASLGMPAIGITDYLNLCGLVKFYGGAHGQGVK 63 Query: 69 PIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIG + M D+L + +L + GYQ L L+S+ Y G Sbjct: 64 PIIGADFKVSSDAMGDDLG-------------QLTILAANNTGYQNLTLLISKAYQRGYG 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E+G EGLI+L+GG G + + N +QVAE L +++ F +R Y+ Sbjct: 111 AAGPIIDRDWLIELG-EGLILLSGGRRGDVGQMLLRGNHAQVAEC-LAFYQQYFPERYYL 168 Query: 185 NLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 L R D E+ V V+LA + +P+VATN FL D++AH++ +A+ + Sbjct: 169 ELIRTGRQDE--ETWVHAAVELAIANSIPVVATNEVCFLEAGDFDAHEIRVAIHDGFTLD 226 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 RP+ +P YL+ EM +FSD+PEAL N+VEIA+RC+ +++ LP+F E Sbjct: 227 DPKRPKNYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGEM 286 Query: 301 DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E+ L K+ GLE RL A + +Y +RL+ ELNVI +M F GYF Sbjct: 287 -----TTEDFLVMKSREGLEERLEFLFPDAAVRAEKRPEYDERLEIELNVINQMGFPGYF 341 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPD Sbjct: 342 LIVMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 401 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K Sbjct: 402 FDVDFCMEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISK 461 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 LIP +P + +A A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 462 LIPPEPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPT 520 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 521 QITDFAPLYCDENGNFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRKKQG 580 Query: 596 ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PD ED+IALV+L+RP Sbjct: 581 EPPIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRP 640 Query: 653 GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+L+GY Sbjct: 641 GPLQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGY 700 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL AD+LRRAMGKK EM KQ+ F GA GI +AV IF+L+ KFA YGFNKSH Sbjct: 701 SLGGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGIEGELAVKIFDLVEKFAGYGFNKSH 760 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 761 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGQ 820 Query: 826 VDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLE 883 F V D+ I Y + AIKGVG +EA + F L D C+R D+KKLNRRVLE Sbjct: 821 YQFHVNDDGEIVYGIGAIKGVGEGPIEAFIEARNEGGYFRELFDLCARTDTKKLNRRVLE 880 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------AHEKGTFSD 936 LV +GA D G R L+ +L K A K ++F AH + +++D Sbjct: 881 KLVMSGAFDRLGPHRAALMSALPEALKAADQHAKAEAIGQADMFGVLAEEPAHIEKSYAD 940 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNI 995 ++++ V+ + E+ LG Y +GHP++ Y K I R +G ++ T RG Sbjct: 941 ---IKRWP---EQVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKMT 994 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 995 MAVGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|330432398|gb|AEC17457.1| DNA polymerase III subunit alpha [Gallibacterium anatis UMN179] Length = 1177 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1055 (41%), Positives = 637/1055 (60%), Gaps = 59/1055 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS +S+++G + ++D+ A Q A+A+TD N ++F G+ Sbjct: 23 APKFVHLRVHSDFSMIDGLPKVKTLVDECAKQQMVAMALTDFTNFCGLVKFYGATLGKGV 82 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-K 126 +PI+G + ++ ++ PF S+ LL GYQ + L+SR Y +G + Sbjct: 83 KPIVGADVLVNSEE------LADEPF----SLTLLAKNNAGYQNITLLLSRAY--QRGYR 130 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + I WL E EG+I+L+GG G + + + AE L +++ F D Y+ + Sbjct: 131 EYPMIDREWLIE-HAEGIIILSGGKDGDVGKFLVRGNQNAAENCLAFYQRYFPDHFYLAI 189 Query: 187 QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D Q+ V LA H++PLVATN+ +FL EED+EAH++ +A+ + +R Sbjct: 190 SRTGRNDEEHYLQLAVNLAEQHQIPLVATNDVMFLCEEDFEAHEIRVAIHDGYTLDDPNR 249 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P Y ++ EM +F+DLP+ALEN+V IA+RC+ +++ LP+F + Sbjct: 250 PKKYSPQQYFRSEQEMCELFADLPQALENSVYIAQRCNVTIRLGQYFLPQFPTGDL---- 305 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + Q Y +RL+ EL VI +M F GYFLIV Sbjct: 306 -STEDYLIQQAKTGLEQRLAVLFPDEQERQQKRAKYDERLETELKVINQMGFPGYFLIVM 364 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K NNIPVGPGRGSGAGS+ AY++ ITD+DPL+F LLFERFLNP+R+SMPDFD+D Sbjct: 365 EFIQWSKDNNIPVGPGRGSGAGSLVAYSIRITDLDPLQFDLLFERFLNPERVSMPDFDVD 424 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 425 FCMDGRDRVIEHVAQMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPP 484 Query: 482 DPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++LQ D + + EA +D V L+++ +KLEG+ R+A HA G+VI ++ Sbjct: 485 DPG--MTLQKAFDAEPKLVEAYNSDEEVKELIDMGRKLEGITRNAGKHAGGVVISPSKIT 542 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVK 595 P+Y D PVT F+ +E AGL+KFDFLGL+TLT++Q ++D + +R + Sbjct: 543 DFSPIYCDSEGKHPVTHFDKSDVEYAGLVKFDFLGLRTLTIIQWAVDMINERMRREGKPE 602 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ Sbjct: 603 IDIHHIPLDDEKSFKLLLDAQTTAVFQLESRGMKDLIRRLKPDCFEDIIALVALFRPGPL 662 Query: 656 DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 + +V N RK+G+E+I S+ P++DP T G+I+YQEQVMQIAQ+L+G Sbjct: 663 QSGMVDNFIRRKHGEEEISYPDAEYQHQSLKPILDP----TYGIILYQEQVMQIAQVLAG 718 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKS Sbjct: 719 YTLGGADLLRRAMGKKKPEEMAKQRSVFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKS 778 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K H+P EF+AA MT EMD VEKI F ++ + ++++PP +NT Sbjct: 779 HSAAYALVSYQTLWLKAHFPAEFMAAVMTSEMDKVEKIVNFYDESLRMGLKVVPPDINTG 838 Query: 825 CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882 F V + I Y L AIKGVG +I+EA ++ F L D C+RVD +K+NRR Sbjct: 839 KYGFSVNEKGEIVYGLGAIKGVGEAPVENIIEARTSGGLFRDLFDLCARVDLRKINRRTF 898 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 ++L+ AGALD G R + +L++ K + K+ ++F G + + Sbjct: 899 DNLIKAGALDKLGPHRAAIALNLEDALKASDQHAKDEALGQTDMF----GVLASSPKQVE 954 Query: 943 FSVENS-----SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 + N+ + + EQ LG Y S HP+ Y L + E SV T RG + + Sbjct: 955 QAYANTPKWTEKMVLDGEQETLGLYLSSHPISRYLKELSHYSNRLSEVSV-TRRGESCTV 1013 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +VV+ + T++G+R+G +T + + + F Sbjct: 1014 SGLVVNFRSLVTKRGNRLGILTLDDRSARMDITLF 1048 >gi|85713117|ref|ZP_01044151.1| DNA polymerase III subunit alpha [Idiomarina baltica OS145] gi|85693065|gb|EAQ31029.1| DNA polymerase III subunit alpha [Idiomarina baltica OS145] Length = 1159 Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1041 (41%), Positives = 620/1041 (59%), Gaps = 53/1041 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS +S+++G + I ++A PA+A+TD N +++ A + G++P Sbjct: 6 SFVHLRIHSDFSMVDGLTKVKPICQRVADMNMPAMALTDQMNFCGLVQYYGAAHSQGLKP 65 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG L + G P + + L +GYQ++I+L+S+ YL + Sbjct: 66 LIGADLWV----------WGDYPEGEIFRLTALAMNNDGYQQIIQLISKAYLRGHVQGKP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I +WL + G+I+L+G G I RA + ++ L +K+ F +R Y+ L R Sbjct: 116 VIDKAWLAQ-HNAGIILLSGAREGDIGRALLKGHQEPLQESLAFYKQYFPERFYLELIRT 174 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R + VQLA H+LP+VATN +FL EE++EAH++ +A+ + K RP+ Sbjct: 175 GRAEEEAYLHSAVQLAAEHDLPVVATNEVVFLEEENFEAHEIRVAIHDGYQLGDKRRPKK 234 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +P YL++ EM +F+DLPEALENTVEIA+RC+ +++ LP F + E Sbjct: 235 YSPQQYLRSAEEMHELFADLPEALENTVEIAKRCNVTIRLGEYFLPAFPTGDLT-----E 289 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L + GLE RL + Y +RL EL+VI +M F GYFLIV +FI Sbjct: 290 GDYLVKVSREGLEERLEFLFPDEAERQAKRPPYDERLQTELDVINQMGFPGYFLIVMEFI 349 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 QW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 350 QWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 409 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRRDEVI +V YG + V+QIITFG++ AKA++RDVGR L PY VD + KL+P DP Sbjct: 410 DRRDEVIDHVAELYGRDAVSQIITFGTMAAKASIRDVGRVLGHPYGFVDGISKLVPGDPG 469 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 ++ +A E AD V L++ ++ LEG+ R+A HA G+VI ++ Sbjct: 470 MTLA-KAFEQVPELGERYDADEEVKELIDFARILEGVTRNAGKHAGGVVISPTTITDFAA 528 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLS 599 +Y D PVTQF+ +E AGL+KFDFLGL+TLT++Q +LD + R + +D++ Sbjct: 529 LYCDDEGKNPVTQFDKNDVESAGLVKFDFLGLRTLTIIQWALDMVNARKKEAGEPLIDIN 588 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I +D + + +L T +FQLES+GM++ + + PD EDIIALV+L+RPGP+++ + Sbjct: 589 AISLNDKQCFDVLKRAETTAVFQLESAGMKKLILRLLPDSFEDIIALVALFRPGPLESGM 648 Query: 660 VYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 V N +RK+G+EK+ H ++P+L+ T GVI+YQEQVMQ+AQ+++GYSL AD+ Sbjct: 649 VDNFIDRKHGREKVSYPDETYQHECLEPILEPTYGVILYQEQVMQVAQVMAGYSLGGADL 708 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM KQ+E F GA N I +A+ IF+L+ KFA YGFNKSH+AAYA++ Sbjct: 709 LRRAMGKKKPEEMAKQREVFREGAHNNNIDPELAMKIFDLVEKFAGYGFNKSHSAAYALV 768 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQT WMKTHYP EF+AA M+ +MDN +KI + + + ++PP VN F V D Sbjct: 769 SYQTLWMKTHYPAEFMAAVMSADMDNTDKIVTLADECERMGLVLLPPDVNKGVYKFTVDD 828 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 R+ Y + AIKGVG I+EA + PF L DFC RVD KKLN+RVLE L+ AGA Sbjct: 829 EQRVVYGIGAIKGVGEAPIEAILEARNEGGPFTDLFDFCCRVDLKKLNKRVLERLIRAGA 888 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--- 947 +D G R L+ SL+ + A + + ++F +T E +VE+ Sbjct: 889 MDSLGPHRASLMASLEKAMRQAVQHRQAESIGQADMFG--------VLTTEPEAVEHEFE 940 Query: 948 ------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 +V E E+ LG Y +GHP++ ++ L+ + T + + +A +V Sbjct: 941 KVKPWPEAVWLEGERETLGLYLTGHPINRFRAELQHYVVGQLANVNETRKNEYVGVAGLV 1000 Query: 1002 VSKQQKKTRKGSRIGWVTFSE 1022 + + ++G R VT + Sbjct: 1001 IDVRVITNKRGQRFAIVTLDD 1021 >gi|253999458|ref|YP_003051521.1| DNA polymerase III subunit alpha [Methylovorus sp. SIP3-4] gi|253986137|gb|ACT50994.1| DNA polymerase III, alpha subunit [Methylovorus sp. SIP3-4] Length = 1149 Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/978 (43%), Positives = 616/978 (62%), Gaps = 35/978 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+F+HL+ HS YS+++G + + + + AAD+ PA+A+TD +NLF A++F + A G++ Sbjct: 4 PTFIHLRCHSEYSVVDGTVRIGDYVKAAAADRMPALALTDLSNLFGAVKFYKSARGKGLK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P++GC L ++ + N P+ ++LL T GY +L EL+SR YL +Q + Sbjct: 64 PVLGCDLWLENETNRDQ------PY----RLLLLCQTHAGYLKLCELLSRAYLENQHRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E G EGLIML+G +G + +A + Q A + LF +R Y+ LQR Sbjct: 114 AEIKRQWLVEAGGEGLIMLSGAMAGDVGQAILQGNQQAALALAQQWAALFPNRFYIELQR 173 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + S+ + LA +LP+VAT+ F+ +D++AH+ + +A V++ RP+ Sbjct: 174 AGHAQQEFYISRALALAGDLDLPVVATHPVQFMQADDFKAHEARVCIAEGYVLADNRRPK 233 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 TP+ + K ++EM ++F+D+P+AL N+VEIA+RC+ L + LP+F + + Sbjct: 234 HFTPEQFFKTQAEMAALFADVPQALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESL--- 290 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + L +A GLE RL + Y RL+FE N+I +M F GYFLIVADF Sbjct: 291 -DEYLVVQAKLGLEKRLQVLYPDEAVRDAKRPVYLTRLEFETNIIIQMGFPGYFLIVADF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK N +PVGPGRGSGAGSV AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDIDFC Sbjct: 350 INWAKNNGVPVGPGRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDIDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+ RD VI YV++KYG V+QI TFG++ AKA +RDVGR L +P++ VD + KLIPN+ Sbjct: 410 QEGRDRVIDYVKHKYGLASVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPNEL 469 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +S A+ + + +E R + V+ LLE++ +LEGL R+ HA G++I +S Sbjct: 470 GITLS-DALEKEPQLKERREQEEEVNELLELALRLEGLTRNIGMHAGGVLISPGKISDFS 528 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDL 598 P+Y + V+Q++ +E GL+KFDFLGL+TLT+L +L+ AQR +K +D Sbjct: 529 PIYCQQNGESLVSQYDKDDVEAVGLVKFDFLGLRTLTILAMALENANAQRALKELPPLDF 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P +D TY LL + T +FQLES GM+ L+ +PDC EDIIALV+LYRPGP+D I Sbjct: 589 ETLPINDKPTYQLLKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G++++ HP +P+LKET G+++YQEQVMQIAQ+++GYSL AD+LRRAMG Sbjct: 649 PDFCRRKHGQQRVEYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK KEEMD Q+ F+ GA KNG + A +F+L+ KFA YGFNKSHAAAYA+++Y TA+ Sbjct: 709 KKKKEEMDAQRAVFVEGAVKNGTPEKQAAELFDLMEKFASYGFNKSHAAAYALVAYHTAY 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYY 837 +K HYP FLAA+M+ +M+N + + F D ++++ P +N FK + D ++ Y Sbjct: 769 LKAHYPAAFLAATMSADMNNTDSVHIFYDDCAANGVEVLAPDINQSEFRFKPISDKQVLY 828 Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L A+KG G I+ A A+ PF L DFC R+D +K+NRRV+ESL+ AGA D Sbjct: 829 GLGAVKGTGWAAIEVILAAREAEGPFKDLFDFCRRLDLRKVNRRVIESLIRAGAFDKLEP 888 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFEN 954 +R LL + A+ + + ++F G SD + TL K + + + + Sbjct: 889 NRAALLAGVSLAISAAE--QSGAASGQNSLF----GEMSDSVAHTLPKVNAWSEQEKLQQ 942 Query: 955 EQRVLGFYFSGHPLDVYK 972 E+ LGFYFSGHP + YK Sbjct: 943 EKSALGFYFSGHPYEGYK 960 >gi|198283301|ref|YP_002219622.1| DNA polymerase III subunit alpha [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247822|gb|ACH83415.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans ATCC 53993] Length = 1167 Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1041 (42%), Positives = 639/1041 (61%), Gaps = 41/1041 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 ++P FVHL VHS YSL +G + + + + A PA+AITD NLF+ ++F A G Sbjct: 3 RTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQG 62 Query: 67 IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQ 124 ++P+IG ++ + D+ + P P S+VLL GY+ L L+SR YL Sbjct: 63 VKPLIGSEVWVHDVAE------------PERPVSLVLLCMDKTGYRNLSRLLSRAYLEGS 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 +I ++WL E ++GLI L+ G I RA + Q AE R + +LF +R Y+ Sbjct: 111 RHGRPQIDVAWL-EGSSDGLIALSAAGQGEIGRALQRHPQQ-AESRARYYARLFPERFYL 168 Query: 185 NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR+ ++ Q V LA +LPLVATNN+ FL D+ A D ++ + Sbjct: 169 EVQRNGEAEQEALVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR TP+H L + EM F+DLPEA +NTVEIARRC+ L + LP + Sbjct: 229 RRPRRFTPEHRLPDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIPANQS 288 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + L + A GL+ RL + I G Y +RL E+ VI +M F GYFLIVAD Sbjct: 289 V----DEYLHDAAQKGLQERLQELRIT-GDATLPYHERLLREVGVIQQMGFPGYFLIVAD 343 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ LLFERFLNP+R+SMPDFD+DF Sbjct: 344 FIQWAKNNGVPVGPGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDF 403 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D+RD VI+YV +KYG +RV QIITFG+++A+A +RDVGR L +PY VD+L KL+P D Sbjct: 404 CMDQRDRVIQYVADKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGD 463 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 ++ +A+ + R + + V LL+I+ +LEGL RHASTHA G+VI PL+ Sbjct: 464 LGMTLA-KALEESEELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADR 522 Query: 543 VPMYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596 +P++ D VTQ + +EK GL+KFDFLGL+TLT++ ++ + A V Sbjct: 523 LPLFNDGSEGGGNVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPV 582 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ +P DD T+ LL + T +FQLESSGMR + +QPD EDI+ALV+L+RPGP+ Sbjct: 583 DIQQLPLDDAATFALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQ 642 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V + RK+GK ++ +HP + P+L+ET GVI+YQEQVMQ AQ L+GYSL AD+LR Sbjct: 643 SGMVDDFIARKHGKAQVTYLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLR 702 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ+ F+ GA KNG++ A IF+L+ KFA+YGFNKSH+AAYA++SY Sbjct: 703 RAMGKKKPEEMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833 QTA++K HYP F++A +T +MD+ +K+ + + ++I PPSV ++F+ GD+ Sbjct: 763 QTAYLKAHYPQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDD 822 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L AIKG+G + I++A F +L D RVD++K+NRR LE+L+ AGA+D Sbjct: 823 HIRFGLGAIKGLGRAAIQAILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDD 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEKFSVENSSVR 951 +G SR L+ S+D + A + ++ + E++F+ ++ ++ E +S+ + Sbjct: 883 WGVSRASLIASVDGCMEAAAQFQSSQASLQESLFSGQEALRVAPPLVSAEAWSLTET--- 939 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 E+ LGFY SGHP+D + L +G + G+ + +A +VV+++ +T++ Sbjct: 940 LRQERETLGFYLSGHPMDSLRDDLTALGTIPLGDVAV---GSTVLVAGLVVARRSTRTKR 996 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G RI ++T + E F Sbjct: 997 GDRIYFLTLDDGQGRLEVVVF 1017 >gi|78222430|ref|YP_384177.1| DNA polymerase III subunit alpha [Geobacter metallireducens GS-15] gi|78193685|gb|ABB31452.1| DNA polymerase III, alpha subunit [Geobacter metallireducens GS-15] Length = 1155 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1042 (41%), Positives = 629/1042 (60%), Gaps = 30/1042 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA+ L +++ K PA+AITD +F A+EF K G++P Sbjct: 2 SFVHLHLHTQYSLLDGAIRLGDLIKKAKDTDMPAVAITDHGVMFGAMEFYLKCKDKGVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128 IIG ++ I +G ++LL GY+ L +LVS + +G Sbjct: 62 IIGSEVYIAPGSRFVKEVKGGEAGAGY-HLLLLCENMTGYRNLSKLVSVGF--KEGFYYK 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYVNL 186 RI L + +EGLI L+ G + A+ ++ E + + LF DR Y+ L Sbjct: 119 PRIDKEVLAQY-SEGLICLSACLKGEV--AYLCERDRMEEAIGVARWYADLFPDRYYIEL 175 Query: 187 QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q + ++ + ++ ++++A LPLVATN+ +L+ ED AH+VL+ + ++ R Sbjct: 176 QENGLAEQDKANKGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDSAR 235 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R + D Y+K EM + F PEA+ NTV+IA RC+ P+F + Sbjct: 236 MRFSTDEFYVKTPEEMAAAFHYAPEAVSNTVKIAERCNLDFDFKTYYFPQFDPP----VG 291 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKG----YHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + L + A GLE RL + + Q Y +RL EL+ I +M F GYFLIV Sbjct: 292 QTLDQMLEDAARKGLEFRLKEIRLKNPDMSPEQEQKYWERLRIELDCITQMGFPGYFLIV 351 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI WAK + IPVGPGRGS AGS+ AY++ ITD+DPL ++LLFERFLNP+R+SMPD D+ Sbjct: 352 ADFINWAKDHGIPVGPGRGSAAGSLVAYSIRITDLDPLPYNLLFERFLNPERISMPDIDV 411 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQDRR+EVI YV KYG ++V QIITFG++ A+A +RDVGRAL M Y VD++ KL+P Sbjct: 412 DFCQDRREEVIHYVTGKYGRDQVCQIITFGTMSARAVIRDVGRALDMTYGDVDKIAKLVP 471 Query: 481 NDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + L+ AIA + R +EA AD V LLEI +LEGL RHASTHAAG+V+ + L Sbjct: 472 E--VLGIKLKDAIAQEPRLKEASEADSRVKELLEIGLRLEGLARHASTHAAGVVVAPKVL 529 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDL 598 + P+Y+D ++ TQ++MK++EK GL+KFDFLGLK LT++ ++ + A + D+ Sbjct: 530 EEFCPVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKIIRAGKDPNFDI 589 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + + DD +Y L++ T G+FQLESSGM+ L ++P C ED+IA +LYRPGP+ + Sbjct: 590 AALRDDDRASYDLISAGNTTGVFQLESSGMKDMLVKLKPSCFEDVIAACALYRPGPLGSG 649 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +V + +RK+G++K+V P ++P+LK+T GVI+YQEQVMQIA+ L+GYSL AD+LRRA Sbjct: 650 MVDDFIDRKHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARTLAGYSLGGADLLRRA 709 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EM KQ++ F+ GA G+ A IF+L+AKFA+YGFNKSH+AAYA+++YQT Sbjct: 710 MGKKDPAEMAKQRDIFLEGAKNGGVDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQT 769 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K HYPVEFLAA +T +M N +K+ K D R+ I+I+PP +N + F+V N I Sbjct: 770 AYLKAHYPVEFLAALLTEDMGNTDKVVKTISDCREMGIEILPPDINDSHLSFRVLGNSIR 829 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 + L A+K VG I+EA + F L DFC RVD K+N+RV+ESLV GA D G Sbjct: 830 FGLGAVKNVGEGAIEAIIEARQEGDFKDLFDFCERVDLHKVNKRVVESLVKCGAFDSTGG 889 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVENSSVR 951 R QL+ +L++ Q +++ R + ++F E+ G K+ L + ++ Sbjct: 890 RRSQLMSALEDAMAIGQKIQQERESAQVSLFGVEEIVRTNGNGKGKVQLPDIPEWDDKLK 949 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 E+ LGF+ +GHPL Y+ +++ + ++L +V S ++ T+K Sbjct: 950 LGLEKEALGFFITGHPLGRYEKEIKRFANVDTATLDERADKSEVKLCGIVTSLKELITKK 1009 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G R+ + T + E FP Sbjct: 1010 GDRMAFATLEDLLGSVEVVVFP 1031 >gi|218665927|ref|YP_002425889.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518140|gb|ACK78726.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 1166 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1041 (42%), Positives = 639/1041 (61%), Gaps = 41/1041 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 ++P FVHL VHS YSL +G + + + + A PA+AITD NLF+ ++F A G Sbjct: 2 RTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQG 61 Query: 67 IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQ 124 ++P+IG ++ + D+ + P P S+VLL GY+ L L+SR YL Sbjct: 62 VKPLIGSEVWVHDVAE------------PERPVSLVLLCMDKTGYRNLSRLLSRAYLEGS 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 +I ++WL E ++GLI L+ G I RA + Q AE R + +LF +R Y+ Sbjct: 110 RHGRPQIDVAWL-EGSSDGLIALSAAGQGEIGRALQRHPQQ-AESRARYYARLFPERFYL 167 Query: 185 NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR+ ++ Q V LA +LPLVATNN+ FL D+ A D ++ + Sbjct: 168 EVQRNGEAEQEALVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR TP+H L + EM F+DLPEA +NTVEIARRC+ L + LP + Sbjct: 228 RRPRRFTPEHRLPDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIPANQS 287 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + L + A GL+ RL + I G Y +RL E+ VI +M F GYFLIVAD Sbjct: 288 V----DEYLHDAAQKGLQERLQELRIT-GDATLPYHERLLREVGVIQQMGFPGYFLIVAD 342 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ LLFERFLNP+R+SMPDFD+DF Sbjct: 343 FIQWAKNNGVPVGPGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDF 402 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D+RD VI+YV +KYG +RV QIITFG+++A+A +RDVGR L +PY VD+L KL+P D Sbjct: 403 CMDQRDRVIQYVADKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGD 462 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 ++ +A+ + R + + V LL+I+ +LEGL RHASTHA G+VI PL+ Sbjct: 463 LGMTLA-KALEESEELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADR 521 Query: 543 VPMYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596 +P++ D VTQ + +EK GL+KFDFLGL+TLT++ ++ + A V Sbjct: 522 LPLFNDGSEGGGNVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPV 581 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ +P DD T+ LL + T +FQLESSGMR + +QPD EDI+ALV+L+RPGP+ Sbjct: 582 DIQQLPLDDAATFALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQ 641 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V + RK+GK ++ +HP + P+L+ET GVI+YQEQVMQ AQ L+GYSL AD+LR Sbjct: 642 SGMVDDFIARKHGKAQVTYLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLR 701 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ+ F+ GA KNG++ A IF+L+ KFA+YGFNKSH+AAYA++SY Sbjct: 702 RAMGKKKPEEMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSY 761 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833 QTA++K HYP F++A +T +MD+ +K+ + + ++I PPSV ++F+ GD+ Sbjct: 762 QTAYLKAHYPQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDD 821 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L AIKG+G + I++A F +L D RVD++K+NRR LE+L+ AGA+D Sbjct: 822 HIRFGLGAIKGLGRAAIQAILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDD 881 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEKFSVENSSVR 951 +G SR L+ S+D + A + ++ + E++F+ ++ ++ E +S+ + Sbjct: 882 WGVSRASLIASVDGCMEAAAQFQSSQASLQESLFSGQEALRVAPPLVSAEAWSLTET--- 938 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 E+ LGFY SGHP+D + L +G + G+ + +A +VV+++ +T++ Sbjct: 939 LRQERETLGFYLSGHPMDSLRDDLTALGTIPLGDVAV---GSTVLVAGLVVARRSTRTKR 995 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G RI ++T + E F Sbjct: 996 GDRIYFLTLDDGQGRLEVVVF 1016 >gi|189425779|ref|YP_001952956.1| DNA polymerase III subunit alpha [Geobacter lovleyi SZ] gi|189422038|gb|ACD96436.1| DNA polymerase III, alpha subunit [Geobacter lovleyi SZ] Length = 1179 Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1041 (41%), Positives = 630/1041 (60%), Gaps = 23/1041 (2%) Query: 6 EKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 E SP FVHL +HS YSLL+GA+ + +++ K Q PA+AITD N+F A+EF K Sbjct: 5 ENSPVTPFVHLHLHSQYSLLDGAIRIEDLVSKAKQYQMPALAITDHGNMFGAVEFYLKCK 64 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIGC+L I ++G + ++LL EGY+ L L S Y Sbjct: 65 KAGIKPIIGCELYIAPDSRFSKDSKGISD--AAYHLILLCQNLEGYKNLSYLTSAGY--K 120 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 +G L E +EGLI L+ G + + A + + +LF DR Y Sbjct: 121 EGFYYRPRVDRALLEQHSEGLIALSACLKGEVAMQCGRGKMEDALETARWYSQLFPDRYY 180 Query: 184 VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q + ++ +Q ++++A LPLVATN+ +L+ ED +AH+VL+ + +S Sbjct: 181 IEIQENTLPEQDVVNQRLLEVARELNLPLVATNDCHYLNREDAKAHEVLLCIQTGKTMSD 240 Query: 243 KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI-LPRFIEKEC 300 R + D Y+K EM + F PEA+ NTV IA RC+ L + P F E Sbjct: 241 PTHMRFSADEFYVKTPEEMAAAFHYAPEAIANTVAIAERCNLELPLEKEYYFPHFEPPE- 299 Query: 301 DDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 K ++ L +AV+GLE RL A+ G Q Y RL EL+ I +MKF Y Sbjct: 300 ---GKTHDDMLEEQAVSGLEERLITIRAKYPDMTGEQVQAYHDRLRTELDCIRQMKFPAY 356 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI WAK+ IPVGPGRGS AGS+ AYA+ ITD+DPL ++LLFERFLNP+R+SMP Sbjct: 357 FLIVADFINWAKRQGIPVGPGRGSAAGSLVAYAIKITDLDPLPYNLLFERFLNPERISMP 416 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DFCQD+R++VI YV KYG ERV QIITFG+++AKA +RDVGRAL M Y VD++ Sbjct: 417 DIDVDFCQDQREKVIEYVVQKYGRERVCQIITFGTMKAKAVVRDVGRALDMAYGDVDKIA 476 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP+D + +AI + + +E ADP V +LLE + LEGL RHA THAAG+V+ Sbjct: 477 KLIPDDLKMTIE-KAIKQEPQLKEMAAADPKVAQLLETANCLEGLARHAGTHAAGVVVAP 535 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595 L + +P+Y+D ++ TQ++MK++E GL+KFDFLGLK LT++Q ++ + + + Sbjct: 536 NQLEEYLPVYKDQKTGGINTQYSMKYVEMVGLVKFDFLGLKNLTVIQNAVRMIREGQNPD 595 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 D++ + DD +Y L+T T GIFQLESSGM++ L ++P C ED+IA +LYRPGP+ Sbjct: 596 FDITRLRDDDQASYDLITAGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACALYRPGPL 655 Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 +V + RK+G++K+V P ++P+LK+T GVI+YQEQVMQI++ L+GYSL AD+L Sbjct: 656 GCGMVDEFIERKHGRQKVVYDLPQLEPILKDTYGVIVYQEQVMQISRSLAGYSLGRADLL 715 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK M K+KE F+ GA G+ A IF+ +AKFA+YGFNKSH+AAYA+I+ Sbjct: 716 RRAMGKKDPAVMAKEKEPFLEGAKAQGLDIKKAEAIFDQMAKFAEYGFNKSHSAAYALIA 775 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K HYPVEF+AA ++ +MD+ +K+ K D R+ I+++PP +NT F V Sbjct: 776 YQTAYLKAHYPVEFMAALLSCDMDSTDKVLKSISDCREQGIEVLPPDINTSGQSFTVSGK 835 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + + L A+KGVG I+EA AD PF + DFC RVD +++N+RV+E+LV GA D Sbjct: 836 SMRFGLGAVKGVGGGAVESIIEARADGPFTDIYDFCERVDLRRVNKRVMEALVKCGAFDS 895 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVR 951 R L+ +LD+ Q ++ R + ++F + + + +E + + Sbjct: 896 LHKHRAPLMAALDDATTAGQRFQEERDSAQVSLFGDMPTATATRSGRKLPDIEEWHDKEK 955 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 E+ LGF +GHPLD Y ++++ +R+ +V S ++ T+K Sbjct: 956 LGYEKEALGFLITGHPLDRYASDIKRLASAEIARLPEFPDNCEVRVCGIVTSLKEIITKK 1015 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G R+G+VT + + E F Sbjct: 1016 GDRMGFVTIEDLTGQIEITVF 1036 >gi|197286116|ref|YP_002151988.1| DNA polymerase III subunit alpha [Proteus mirabilis HI4320] gi|194683603|emb|CAR44494.1| DNA polymerase III, alpha chain [Proteus mirabilis HI4320] Length = 1160 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1049 (40%), Positives = 622/1049 (59%), Gaps = 46/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G ++ K+A+ PA AITD NL ++F A AGI+ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D+ ++ L + +L GYQ L L+S Y G Sbjct: 64 PIVGA--DVYLETELLGDEYAH--------LTILARDNVGYQNLTLLISEAYKHGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL EGL++L+GG G + + + + E+ L ++ F D Y+ L R Sbjct: 114 PVIKQEWLTTY-KEGLLLLSGGRMGDVGKFLLRGNRALVEQCLEYYQTHFPDSYYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + + V LA LP+VATN+ FL +D++AH++ +A+ +S RP+ Sbjct: 173 TGRPDEESYLHEAVALASEKGLPVVATNDVRFLDSDDFDAHEIRVAIHDGFTLSDPKRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y++ EM +F+D+PEALEN+VEIA+RC+ +++ LP+F + Sbjct: 233 HYSPQQYMRTEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDFLIKKSKEGLEERLAFLFPDPQEREKRRPEYDERLEIELKVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDRVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K VD+ Sbjct: 527 PLYCDPEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKSLEPVDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S I D ++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 SAISLTDQRSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G E+I H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGVEEISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F +GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEAGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I+EA F + D C+R ++KKLNRRV+E L+ +G Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKLNRRVMEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 A D G R L+ SL++ K A K ++F G ++ + S N Sbjct: 887 AFDKLGPHRAALMSSLEDALKAADQHAKAEAIGQSDMF----GVLAEAPEQVERSYANVP 942 Query: 948 ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 V E E+ LG Y +GHP+ Y K I R ++ V T RG +++A +V++ Sbjct: 943 KWPDQVVLEGERETLGLYLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMVKVAGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 SKVFTTKRGNRIGICTLDDRSGRLEIMLF 1031 >gi|317493173|ref|ZP_07951596.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918833|gb|EFV40169.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 1160 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1051 (40%), Positives = 627/1051 (59%), Gaps = 50/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + ++ K+AA PA AITD N+ ++F A AGI+ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKVGPLVKKVAALGMPAFAITDHTNMCGLVKFYGSAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D+ ++ L + + +L + GYQ L L+S Y G Sbjct: 64 PIIGA--DVFVKSELLGDE--------LSHLTILAANNTGYQNLTLLISHAYQRGYGADG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+GG G + + + Q+A + + +++ F D Y+ L R Sbjct: 114 PVIDRDWLVEY-REGLILLSGGRQGDVGKMLLRGNQQLAHECVDFYQQYFADSYYLELIR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + V LA ELP+VATN+ FL D++AH++ +A+ + R Sbjct: 173 TGRPDE--ESYLHFAVALAEERELPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ + Y+++ EM +F+D+PEALEN+VEIA+RC+ +++ LP+F E Sbjct: 231 PKNYSAQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGEM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLIV Sbjct: 287 -STEDFLVAKSKEGLEERLEFLFPDPEVRAKRRPEYDERLDVELKVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 406 FCMEKRDRVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 +P ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 EPGMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K + Sbjct: 525 FAPLYCDSEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEDPI 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEVSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA + GI +++ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFKEGAERMGIDGELSMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGQYHFH 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ I Y + AIKGVG I++A + F L D C+R D+KKLNRR+LE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIDARNEGGHFKELFDLCARTDTKKLNRRMLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEK 942 +GA D G R L+ SL++ K A K ++F G ++ + + Sbjct: 885 SGAFDRLGPHRAALMNSLNDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEKSYSS 940 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + + V + E+ LG Y +GHP+ Y K I R G ++ T RG +V Sbjct: 941 VAPWPAQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLV 1000 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V+ + T++G+RIG T + + E F Sbjct: 1001 VAARVMTTKRGNRIGVCTLDDRSGRLEVMLF 1031 >gi|315111545|ref|YP_156071.2| DNA polymerase III subunit alpha [Idiomarina loihiensis L2TR] Length = 1158 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1048 (40%), Positives = 624/1048 (59%), Gaps = 43/1048 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P+FVHL+VHS +S+++G + I + +A PA+AITD N + + KA G+ Sbjct: 3 APNFVHLRVHSDFSMIDGLAKVGPICEAVAEAGMPALAITDQMNFCGLVRYYGKAHQLGL 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P+IGC + Q P + + L EGYQ++ +L+S+ YL K Sbjct: 63 KPLIGCDFWV----------QADYPESEIFRLTALAMDNEGYQQITQLISKAYLRGNIKG 112 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL+E EG+I+L+G G + +A + L +++ F DR Y+ L Sbjct: 113 KPVIDKDWLKE-HNEGIILLSGSRQGDVGQALIKGHDSQLDAALDFYQQYFPDRYYLELV 171 Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R + + V LA LP+VATN +FL EED++AH++ +A+ + K RP Sbjct: 172 RTGRPQEENYLHKAVALAGETGLPVVATNEVVFLKEEDFDAHEIRVAIHDGYQLEDKRRP 231 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +P YL++ EM +FSD+PEA+ENTVEIA+RC+ +++ LP+F D+ Sbjct: 232 KKYSPQQYLRSSEEMSELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPKF---PTGDLTT 288 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 EE L + GLE RL A + +Y +RL EL VI M F GYFLIV + Sbjct: 289 EEF--LIKVSEEGLEERLEFLFPDAEEREQKRPEYDERLKRELGVINDMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRRDEVI +V + YG E V+QIITFG++ AKAA+RDVGR L PY VDR+ KLIP D Sbjct: 407 CMDRRDEVIDHVADLYGREAVSQIITFGTMAAKAAIRDVGRVLAHPYGFVDRISKLIPGD 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A + + A D V ++++++ LEG+ R+A HA G+VI ++ Sbjct: 467 PGMTLA-KAFEIEPQLGAAYDQDEEVKAIIDMARILEGVTRNAGKHAGGVVISPTKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++Q ++D + +R K +D Sbjct: 526 SPLYCDDEGNNPVTQFDKDDVESAGLVKFDFLGLRTLTIIQWAVDMVNRRHAKSGKDPID 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ I D + LL T +FQLES GM++ ++ + PD EDIIALV+L+RPGP+ + Sbjct: 586 ITSIDLTDPACFKLLKKAETTAVFQLESRGMKELIKKLLPDSFEDIIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E+I H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L A Sbjct: 646 GMVDNFIDRKHGREEISYPDAEYQHESLQPILEPTYGVILYQEQVMQIAQVLAGYTLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+E F GA++N I +A IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DLLRRAMGKKKPEEMAKQREIFAKGAAQNNIDPELATKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT WMKTH+P EF+AA M+ +MDN +KI + + + ++PP VN F V Sbjct: 766 LVSYQTLWMKTHFPAEFMAAVMSADMDNTDKIVTLADECERMGLDLLPPDVNKGEYKFTV 825 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + R+ Y + AIKGVG I++A + PF L DFC RVD K++N+R+L+ L+ A Sbjct: 826 DEQQRVVYGIGAIKGVGEAPIESIIKARQEGGPFRDLFDFCCRVDLKRMNKRILQRLIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFS 944 GA+D G R L+ +L+ + A+ ++F + + +++ K+S Sbjct: 886 GAMDNLGPHRASLMATLEKAIRQAEQHLNAEKIGQSDMFGVLTTEPEAVEQEFVSVRKWS 945 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 +V E E+ LG Y +GHP++ ++ L+ T + +I +A +V+ Sbjct: 946 ---EAVWLEGERDTLGLYLTGHPINRFRAELKHYINSTLSNVTPTRKDESIAIAGLVIDV 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++G R VT + + F Sbjct: 1003 RVLTNKRGQRFAIVTLDDKTARMDVRLF 1030 >gi|52841197|ref|YP_094996.1| DNA polymerase III, alpha subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628308|gb|AAU27049.1| DNA polymerase III, alpha subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 1148 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1047 (41%), Positives = 644/1047 (61%), Gaps = 53/1047 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VH+ +SL++G + + ++ + A A+A+TD NLF+A++ + A AGI+PI Sbjct: 5 FVHLRVHTEFSLVDGLVQIKPLMKALPARGMSAVAVTDFCNLFAAVKVFKSATEAGIKPI 64 Query: 71 IGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG L D++ DN + S+VLL GY+ L LVS+ Y Q Sbjct: 65 IGSDLPCHDLETPDN-------------IFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ L W+QE ++GLI L+GG G I +A N +A KR L + LF +R Y+ +Q Sbjct: 112 QPRVQLQWIQEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQ 170 Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 R R + + +++ LA +LPLVATN+ F+ E+D++AH+ + + ++ R Sbjct: 171 RTGRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRV 230 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + YL++ EM +FSDLP AL+NTVEI++RC+ L++ LP F + + Sbjct: 231 QQYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV-- 288 Query: 306 EEENELRNKAVAGLEVRLAQ-------GAI--AKGYHAQDYRQRLDFELNVIARMKFSGY 356 E L + + GLE RL Q G + A+G +Y +RL EL+VI M F+GY Sbjct: 289 --EAYLSHLSEIGLEERLKQLFRDKSEGELLAARG----EYDKRLKIELDVINNMGFAGY 342 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP Sbjct: 343 FLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMP 402 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L Sbjct: 403 DFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLA 462 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP + +S +A+ + R + V L +++ KLEG+ R+A HA G+VI Sbjct: 463 KLIPFELGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAP 521 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592 L+ +Y + S V+QF+ +E GL+KFDFLGL+TLT++ +L + ++ Sbjct: 522 SQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENA 581 Query: 593 GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G+ +D+S IP D T+ LL T +FQLES GM++ + +QPDC EDIIALV+L+R Sbjct: 582 GLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFR 641 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+ + +V + +RK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L Sbjct: 642 PGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGA 701 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+E F GA G+ + +A +IF+L+ KFA YGFNKSH+AAY Sbjct: 702 ADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAY 761 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++YQTAW+K HYP F+AA M+ +MDN +K+ F + +Q++PPS+N F Sbjct: 762 ALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFT 821 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D + I Y L AIKGVG + I+ E + + PF L FC R+D +K+NRRV+E+L+ Sbjct: 822 VSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIK 881 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D + R L SL+ K A+ +N+++ ++F+ + ++ +E S Sbjct: 882 SGAFDIWKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQNYVESKSWSE 941 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQ 1005 + R E E+ VLGFY +GHP D Y+ R++G I + ++ I + A VV+ + Sbjct: 942 AQ-RLEGEREVLGFYLTGHPADQYR---RELGDFIVPVSQLNPSLHKKAI-ICAQVVAIR 996 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G ++ + + +A F Sbjct: 997 KIITKRGKKLVIIGMDDATARIDAVVF 1023 >gi|320354498|ref|YP_004195837.1| DNA polymerase III subunit alpha [Desulfobulbus propionicus DSM 2032] gi|320123000|gb|ADW18546.1| DNA polymerase III, alpha subunit [Desulfobulbus propionicus DSM 2032] Length = 1173 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1046 (41%), Positives = 645/1046 (61%), Gaps = 44/1046 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YS+L+GA+ +++++D A+A+TD ++ ALEF +KA AGI+P+ Sbjct: 5 FIHLHVHSQYSMLDGAIRVSDLIDTAKEFGMEAVALTDHGAMYGALEFYEKAKKAGIKPL 64 Query: 71 IGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 +GC+ + ++ +++ ++ F +V L GY L++L S L Q K Sbjct: 65 VGCEFYL-AENGMEIHDRSAGHNF----HLVALAMNEAGYGNLMKLAS----LAQTKGFY 115 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 RI L EGLI+LT G I N A R L +K+FGDRLY+ + Sbjct: 116 YRPRIDRQTLYA-HQEGLIVLTACLKGEIPWRLTHNDENRARARALELQKVFGDRLYLEI 174 Query: 187 QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q + ++ +Q ++ LA + LVATN+ +L++E+ AH+VL+ + ++ +R Sbjct: 175 QENGLPEQTIANQGLMALAKDLNIKLVATNDCHYLTKEESYAHEVLLCIQTGKTINDPNR 234 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T + Y K+ EM + F+ PEA+ NT+E+A RC+ L P F KE + + Sbjct: 235 FRFNTNELYFKSGDEMAAQFAYCPEAISNTLEVAERCNLELSFKEHFFPIFPIKENETL- 293 Query: 305 KEEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E G + RL G ++ + YR RL++E++VI M F+GYFLIV Sbjct: 294 ---ETVFSQACWDGFQQRLDHMREMGPVS-AETEKTYRDRLEYEIDVIQEMGFAGYFLIV 349 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI WAKK IPVGPGRGSGAGS+ AY + ITDIDP+ + LLFERFLN +R+SMPDFD+ Sbjct: 350 ADFINWAKKQKIPVGPGRGSGAGSLAAYCMAITDIDPIPYGLLFERFLNVERVSMPDFDV 409 Query: 421 DFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 DFC++RRDEVI YV+ +YG + VAQI+ +GS++A+A LRDVGR L +P VDR+ KL+ Sbjct: 410 DFCKERRDEVIDYVRQRYGGDDYVAQIVAYGSMKARAVLRDVGRVLDIPLPVVDRIAKLV 469 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P + + +AI + R REA + D V LL I+Q LEGL RH STHAAG+VI +P+ Sbjct: 470 PEELKITLK-KAIEKEPRLREA-MKDDEVRELLTIAQTLEGLARHKSTHAAGVVISPKPM 527 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598 + +P+ ++ +TQ++MK+ EK GLIKFDFLGLKTLT++ ++L +A G +VDL Sbjct: 528 VEYLPVCIGPNKEI-LTQYDMKYTEKTGLIKFDFLGLKTLTVIDRALKLIAYDVGKEVDL 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD +TY+LL +LG+FQLES GMR+ L MQP+ D+IALV+LYRPGP+D+ Sbjct: 587 RKIPMDDPKTYNLLCRGDSLGVFQLESDGMRELLIKMQPEQFTDLIALVALYRPGPLDSG 646 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +V + K+G+ P I +L+ET GVI+YQEQVM+I+ +L+GYSL +AD+LRRA Sbjct: 647 MVDTFVETKHGRRPADYPLPQIKSVLQETYGVIVYQEQVMKISNILAGYSLGDADILRRA 706 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKKI E M+K++ +F++GA N I + A IF+L+AKFA YGFNKSH+AAYA+++YQT Sbjct: 707 MGKKIPEVMEKERGKFMAGAKVNNIPEDKATYIFDLMAKFAGYGFNKSHSAAYALVAYQT 766 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K HYP +FLAA ++ + DN +K+ K+ + RQ I+++PP +N DF V ++R+ Sbjct: 767 AYLKAHYPAQFLAALLSCDYDNTDKVVKYINECRQNKIEVLPPDINESFNDFTVINDRVR 826 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + LAA+K VG I+ E A P+ SL DFCSRVDS K+NR+V+ESL+ AGA D Sbjct: 827 FGLAAVKNVGGAALDSILAEREAGGPYRSLSDFCSRVDSSKVNRKVIESLIKAGAFDSMS 886 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSV- 950 R Q + LD A+ +++R + N+FA K + ++ L E + Sbjct: 887 GRRAQYMAMLDQCLDRAKAAQRDRMSGQMNLFAIGQPASKQAEATEVELPADVEEWPELE 946 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRK---MGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 R E+ +GF+ +GHPL+ LR+ I G E+ G +R+ ++ S ++ Sbjct: 947 RLAAEKETVGFFLTGHPLEGVMEDLRRAVDTDIAGVEK---LREGQAVRIGGLIASYKEH 1003 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 K++KG R+ + T + + E FP Sbjct: 1004 KSKKGDRMAFTTLEDMSASIEVIVFP 1029 >gi|32491128|ref|NP_871382.1| hypothetical protein WGLp379 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166335|dbj|BAC24525.1| dnaE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 1159 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/981 (41%), Positives = 613/981 (62%), Gaps = 41/981 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL++HS YS+++G + I+++ PA+AITD NL+ ++F A GI+PI Sbjct: 6 FIHLRIHSDYSIIDGLPKIETIINRAKKLNMPALAITDFTNLYGLIKFYIFAKKNGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG LK GK + I +L S GY+ LI L+S+ Y Q Sbjct: 66 IGSDF------YLKKIICGKEE---ISEITILASNNMGYKNLILLISKAYQFGQTNIGPT 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 I L WL + + GLI+L+GG G I + N+ + + + +KK F +R Y+ + R Sbjct: 117 INLYWLSKYNS-GLIILSGGIYGEIGKYLIKNNLENIKYCINFYKKYFHNRYYLEITRTG 175 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + + + L+ + +PLVATNN F+ D+ H++ +++ +T + + T Sbjct: 176 KSEEEIYINYALNLSINYNIPLVATNNVRFIFRNDFNVHNIKVSIYQNTTLKNLKKNNYT 235 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + Y+K EM +FSD+PE+LEN++EIA+RC+ ++++ LP F E + Sbjct: 236 DNQYMKCEKEMCDLFSDIPESLENSIEIAKRCNVNIELNKYHLPHFSSGELS-----PKK 290 Query: 310 ELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + NK+ GLE +L +I K + + Y RL EL VI +MKF YFLI+ +FI W Sbjct: 291 YIINKSYLGLEKKLDFLFPNSIEKNKNKKKYETRLKNELKVINKMKFPSYFLIIMEFISW 350 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AKKNNIPVGPGRGSGAGS+ AY+L ITDIDPL F LLFERFLNP+R+SMPDFDIDFC ++ Sbjct: 351 AKKNNIPVGPGRGSGAGSLVAYSLNITDIDPLSFGLLFERFLNPERISMPDFDIDFCMEK 410 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI +V N YG + VAQIITFG + A++ ++DVGR L PY VD++ KLIP DP Sbjct: 411 RDLVINHVANIYGKKSVAQIITFGKMTARSVIKDVGRVLGFPYRFVDKISKLIPLDPG-- 468 Query: 487 VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L+ ++ + + + +D V +++++S+ LEGL ++ S HA GIVI + ++ P+ Sbjct: 469 VTLEKSLNTEHQLIKLYSSDEEVKKIIDMSKNLEGLIKNVSKHAGGIVISPKEITNFTPI 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSL 600 Y D++++ +TQF+ IEK GL+KFDFLGL+TLT++ ++ + ++ K +D+S Sbjct: 529 YYDIKNNTQITQFDKDDIEKIGLVKFDFLGLRTLTIIDWTVKIINKKREKNNLDLIDISK 588 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +++ LL T+ +FQLES G+R ++ +QPDC EDII+LV+L+RPGP+ + +V Sbjct: 589 IPLNDIKSFELLKKSKTISVFQLESKGIRDLIKRLQPDCFEDIISLVALFRPGPLKSGMV 648 Query: 661 YN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 N NRK+GKEKI H L++P+LK T G+I+YQEQVM IAQ+L+GYSL EAD+L Sbjct: 649 ENFINRKHGKEKIFYPDKNWQHELLEPILKSTYGIILYQEQVMSIAQVLAGYSLGEADIL 708 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK +EM +Q+ RF +GA KNGI K ++ IF+LL KF+ YGFNKSH+AAYA++S Sbjct: 709 RRAMGKKKVKEMSEQRNRFKNGALKNGIDKIFSMKIFDLLEKFSGYGFNKSHSAAYALLS 768 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQT W+KTHY EF++++M+ +MDN ++I + + I+I+ P +NT FKV D Sbjct: 769 YQTLWLKTHYATEFMSSAMSADMDNSDRIISLINECKNIGIKILLPDINTCNYHFKVVDK 828 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 +I Y L AIKG+G ++ + I + + F L D C R D KKL R+ +E L+F+GALD Sbjct: 829 KIIYGLGAIKGIGLSSIKEIKNQIKKNGNFTDLFDLCLRSDPKKLTRKTIEKLIFSGALD 888 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSV 950 R +++L K+AQ KN+ ++F + K + F S++N S+ Sbjct: 889 KLNKDRSFNVKNLPYAMKFAQQKIKNKKLGQIDMFNYR---LKSKYIFKHFESSMQNFSI 945 Query: 951 RFENEQRVLGFYFSGHPLDVY 971 E E+ +LG Y S HP+ Y Sbjct: 946 -LEEERNMLGIYLSNHPMKYY 965 >gi|145598935|ref|YP_001163011.1| DNA polymerase III subunit alpha [Yersinia pestis Pestoides F] gi|145210631|gb|ABP40038.1| DNA polymerase III, alpha subunit [Yersinia pestis Pestoides F] Length = 1171 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1056 (41%), Positives = 624/1056 (59%), Gaps = 49/1056 (4%) Query: 4 YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 YL+ + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 9 YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 69 HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181 G I WL + EGLI+L+GG G + + F +QV + L F ++ F D Sbjct: 119 GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDC 176 Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R R + V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 177 YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F E Sbjct: 237 VDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGE 296 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGY 356 E+ L KA GLE RL A Q +Y +RLD EL VI +M F GY Sbjct: 297 M-----STEDFLVEKAKQGLEERLEFLFPAPEVRLQKRPEYDERLDIELKVINQMGFPGY 351 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMP Sbjct: 352 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMP 411 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 412 DFDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 472 KLIPLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 531 TKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKT 590 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+R Sbjct: 591 GLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSG Sbjct: 651 PGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 710 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKS Sbjct: 711 YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKS 770 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 771 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830 Query: 825 CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882 F V D+ I Y + AIKGVG I+EA + F L D C+RVD+KKLN+R+L Sbjct: 831 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRIL 890 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+ SL + K A K ++F G +D + Sbjct: 891 EKLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLADAPEQVE 946 Query: 943 FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996 S N V + E+ LG Y +GHP+ Y K I R G ++ T RG Sbjct: 947 QSYANVPPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTT 1006 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|291615022|ref|YP_003525179.1| DNA polymerase III, subunit alpha [Sideroxydans lithotrophicus ES-1] gi|291585134|gb|ADE12792.1| DNA polymerase III, alpha subunit [Sideroxydans lithotrophicus ES-1] Length = 1189 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1084 (40%), Positives = 639/1084 (58%), Gaps = 84/1084 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSFVHL++HS YS+ +G + + + AD PA+A+TD +N+F ++F ++A AGI+ Sbjct: 3 PSFVHLRLHSEYSIADGIVRIGEAVSAAKADAMPALALTDLSNVFGLVKFYKEARGAGIK 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GC + + N + +Q PF ++LL + GY RL L++R YL +Q + Sbjct: 63 PIVGCDVYVS---NDAVRDQ---PF----RLLLLCQSHAGYLRLCGLLTRAYLENQYRGR 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL++ GT+GLI L+G G + ++ AE L + LF R Y+ +QR Sbjct: 113 PEIRTEWLRD-GTDGLIALSGAHLGEVGMTLLNGNASSAEVVALGYADLFPQRFYLEVQR 171 Query: 189 HRGYDRYRESQ----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + RE Q V+LA LP+VAT+ FL+ +D++AH+ + +A V++ K Sbjct: 172 ---FGAAREEQHLRDTVKLASKLALPVVATHPVQFLTIDDFKAHEARVCIAEGYVLNDKR 228 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R T Y K ++EM ++F+DLPEAL+N+VEIA+RC+ L++ P LP F + + Sbjct: 229 RQRQFTAQQYFKTQAEMAALFADLPEALQNSVEIAKRCNISLKLGKPHLPDFPTPNGESL 288 Query: 304 QKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 ++ LR+++ GLE R+ Q + +Y+ RLDFE+N I MKF GYFLIV Sbjct: 289 ----DDFLRSESQRGLEQRMLQLYPDETVRAAKMAEYQARLDFEVNTIINMKFPGYFLIV 344 Query: 361 ADFIQWAKK-------NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 ADFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+ Sbjct: 345 ADFIRWAKSFRDARFPNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYELLFERFLNPERV 404 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFD+DFCQD R+ VI+YV++ YG V+QI TFG++ +K +RDVGR L PY D Sbjct: 405 SMPDFDVDFCQDGRELVIQYVRHHYGEACVSQIATFGTMASKGVIRDVGRVLDFPYGLCD 464 Query: 474 RLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 RL KL+P + PVSL+ + + F ++ V+ L+E+ ++LE L R+ HA G+ Sbjct: 465 RLSKLVPVEGVKPVSLRKAREMEPEFNAVIASEEGVEELMELGERLEDLTRNVGMHAGGV 524 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 +I L+ P+Y S+ V+Q++ +E GL+KFDFLGL+TLT++ ++ ++ Sbjct: 525 LIAPGKLTDFCPLYCAEGSESTVSQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVRYIQDL 584 Query: 593 GVKVD------------------------LSLIPFDDHETY-HLLTTKGTLGIFQLESSG 627 G + + IP DD TY + T T +FQ ES G Sbjct: 585 GTGISDLGSSNAGAGGDAKSQIQNPKSFSIENIPLDDKATYDRIFRTANTTAVFQFESRG 644 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 M+ L QPDCI+D+IAL +LYRPGP+D I Y NRK+ +E+++ HPL++ ++ T G Sbjct: 645 MKDTLVKAQPDCIDDLIALNALYRPGPMDFIPDYINRKHKREQVILPHPLLEKVVGNTYG 704 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +++YQEQVMQ AQ+++GY+L AD+LRRAMGKK EEM +Q+ F++GA+KNGI + A Sbjct: 705 IMVYQEQVMQSAQVVAGYTLGGADMLRRAMGKKKAEEMAEQRSIFVAGAAKNGIEEKKAN 764 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 IF+ + KFA YGFNKSHAAAY++++YQTA++K HYP F+A++MT EM N +K+ F Q Sbjct: 765 EIFDTMEKFAGYGFNKSHAAAYSLVAYQTAYLKCHYPAAFMASTMTSEMVNTDKVSFFYQ 824 Query: 808 DARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866 DA Q ++I+ P +N+ C F+ V + I Y L A+KG G +I+ A A PF L Sbjct: 825 DAVQQGLKILAPDINSSCFRFQPVDEKTIAYGLGAVKGTGEAAVENIVAARAAGPFRDLF 884 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DFC RVD + +NRR +E+L+ AGA D R QLL SLD A+ +K R ++ Sbjct: 885 DFCHRVDKRIVNRRAIEALIRAGAFDSISDHRYQLLASLDAALGSAE--QKARAANQNSL 942 Query: 927 FAHEKGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR---KMGIK 981 F ++ + + ++ V +R E+ LGFY SGHP + L K + Sbjct: 943 FGDDE---AHAMPVQMADVPRWKMREQLAQEKTALGFYLSGHPYQEFAAELSNFVKHRLA 999 Query: 982 GYEESVAT----------IRGNN---IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + T R NN I LA MV + +TR+G ++ VT + + E Sbjct: 1000 DITPDIVTPAGGNSGYGGGRRNNAKSIVLAGMVSGVRVLQTRRG-KMAVVTLDDGSAALE 1058 Query: 1029 ANFF 1032 F Sbjct: 1059 VVVF 1062 >gi|114321000|ref|YP_742683.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227394|gb|ABI57193.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 1182 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1068 (41%), Positives = 636/1068 (59%), Gaps = 62/1068 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS +SL +G L + ++D +A PA+AITD NLF ++F + A AAG++P Sbjct: 6 GFVHLNVHSEFSLSDGILRIPELVDAVAGQGMPAVAITDQGNLFGMVKFYKAALAAGVKP 65 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK--- 126 I+G ++ ++ ++ + + ++ LL +GY L L+S Y QG+ Sbjct: 66 IVGAEIRVEDEEAERDHS----------ALTLLCRDLDGYAALSRLLSLSY--QQGRTVD 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + + +WL E EGLI+L+GG G + +A +++ AE + F D ++ L Sbjct: 114 DTPVVQRAWL-EADHEGLIVLSGGKDGDVGKALLAGNTRRAESLARWYAGHFPDAYFLEL 172 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR R D V LA LP+VATN FL+ +DY+AH+V + + + R Sbjct: 173 QRTGRPGDEDHLHAAVALATELALPVVATNAVRFLAADDYDAHEVRVCIHDGYTLDDPKR 232 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR T YL++ +EM ++FSDLPEALENTVEIARRCS L + +LP F E I Sbjct: 233 PRRYTNQQYLRSPAEMGALFSDLPEALENTVEIARRCSLDLTLGENVLPDFPIPEGLTI- 291 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIV 360 E L +A+ GLE RL + +A+G + YRQRLD+EL +I +M F GYFLIV Sbjct: 292 ---EEFLHQEALRGLEQRLEERGLAEGETEEGVRETYRQRLDWELGIINQMGFPGYFLIV 348 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI+WAK+++IPVGPGRGSGAGS+ AYAL ITD+DPLR+ LLFERFLNP+R+SMPDFD+ Sbjct: 349 ADFIRWAKEHDIPVGPGRGSGAGSLVAYALAITDLDPLRYDLLFERFLNPERVSMPDFDV 408 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RDEVI YV +YG E+V+QI T G++ A+A +RDVGR L Y VDR+ KL+P Sbjct: 409 DFCMEQRDEVIEYVARRYGREKVSQIATHGTMAARAVVRDVGRVLGHGYGYVDRIAKLVP 468 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +P ++ +A + + D LL ++ KLEGL R+ HA G+VI L+ Sbjct: 469 FEPGMQLT-KAFELEPELKALYEKDEEAGPLLSMALKLEGLARNVGKHAGGVVIAPTALT 527 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFL-AQRG-VK 595 P+Y + + TQ++ +E+ GL+KFDFLGL+TLT++ K+++ L QRG Sbjct: 528 DFSPLYCEPGGEGLATQYDKDDVEEVGLVKFDFLGLRTLTIIDWTVKAVNALREQRGETP 587 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP DD T+ LL T +FQLES GM++ ++ +QPD EDIIALV+L+RPGP+ Sbjct: 588 LDIARIPLDDRATFDLLKRCQTTAVFQLESRGMKELIKRLQPDSFEDIIALVALFRPGPL 647 Query: 656 DNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + +RK+G+ ++ P ++P+LK T GVI+YQEQVMQIAQ L+GYSL Sbjct: 648 QSGMVDDFIDRKHGRAQVAYPTPELHHDDLEPILKPTYGVILYQEQVMQIAQALAGYSLG 707 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EM KQ+E F+ GA ++G+S+ A IF+L+ KFA YGFNKSH+AA Sbjct: 708 AADLLRRAMGKKKAAEMAKQREIFLKGAQEHGLSEAHAGAIFDLMEKFAGYGFNKSHSAA 767 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQTAW+K HYP F+A+ ++ +MDN +K+ F ++ R+ + + PP VN F Sbjct: 768 YALLSYQTAWLKHHYPAPFMASVLSSDMDNTDKVVIFIEECREMGLTVRPPDVNRSGYRF 827 Query: 829 KVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 + D + I Y L A+KGVG + I+E A PF L+D C+RVD +K+NRRVLE+L Sbjct: 828 RAEDEQTIIYGLGAVKGVGQSALDAIIEERDAHGPFKDLQDLCNRVDLRKVNRRVLEALC 887 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSV 945 +G+LD +R + L A+ +N E++F G + FS Sbjct: 888 RSGSLDSLIPNRATGMAWLPEALAAAEQKTRNAAAGQEDLFGLPGDGAAVAEAEEPHFST 947 Query: 946 ENSSV-----RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---------- 990 + R E+ LG + +GHP+D Y+ L + + + +A Sbjct: 948 PEQAEWDEHDRLAAEKETLGLFLTGHPIDPYEAELSHLAERRIAQVLAAAGEPGEKPENG 1007 Query: 991 -----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G ++R+ +VVS + + T G R+ + + EA FP Sbjct: 1008 RGRRRNGPSVRVVGLVVSLRTRNTASGGRMASLVLDDRTARMEAMLFP 1055 >gi|238897448|ref|YP_002923125.1| DNA polymerase III, alpha subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465203|gb|ACQ66977.1| DNA polymerase III, alpha subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 1160 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1054 (41%), Positives = 620/1054 (58%), Gaps = 56/1054 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL VHS YS+++G + ++ K AA PA+A+TD +N ++F A GI+ Sbjct: 4 PRFIHLSVHSDYSMIDGLTKIKPLVQKAAALGMPALALTDFSNFCGLVKFYGAAHKVGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D +Q+ N + + LL EGY + L+S Y G Sbjct: 64 PIIGA--DFYVQNPALENNFAR--------LTLLARNQEGYHNITLLISAAYQRGYGSLG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + EGLI+L+G G + + + ++ L ++ F D Y+ L R Sbjct: 114 PVIDRHWLIK-HKEGLILLSGAKMGDLGQFILRENQSQIDQCLHFYQTHFPDNYYIELTR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + + +A H +P+VATN+ F+ D++AH++ +A+ ++ RP+ Sbjct: 173 TGRADEESYLHSAINIAEKHGIPVVATNHVRFMDPSDFDAHEIRVAINAGFTLADPKRPQ 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P ++++ +M +FSD+PEAL N+VEIA+RC+ L++ P++ + Sbjct: 233 NYSPQQFMRSEQDMCELFSDIPEALTNSVEIAKRCNLNLRLGEYFFPKYPTGKM-----S 287 Query: 307 EENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L ++ GL RL + I K + Y QRL EL VI M F GYFLIV + Sbjct: 288 TEDFLIARSQEGLGKRLEFLFSDPEIRK-QKREAYDQRLALELQVINEMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N+IPVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+S+PDFD+DF Sbjct: 347 FIQWAKDNHIPVGPGRGSGAGSLVAYALQITDIDPLEFDLLFERFLNPERISLPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP D Sbjct: 407 CMEKRDAVIEHVADMYGRESVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRIAKLIPLD 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + +A AD V LL++++KLEG+ R+A HA G+VI ++ Sbjct: 467 LGMTLE-KAFVAEPELTKAYEADEEVRSLLDMARKLEGVTRNAGKHAGGVVIAPTKMTDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D + PVTQF+ IE GL+KFDFLGL+TLT++ K+++ + QR + +D Sbjct: 526 APLYCDSQGQNPVTQFDKNDIEYVGLVKFDFLGLRTLTVIHKAVEMINQRIITQGAQPID 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +SLIP +D +++ +L T IFQLES GM+ ++ ++PDC EDIIALV+L+RPGP+ + Sbjct: 586 ISLIPLNDPKSFEVLQRSETTAIFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK G+E I HP + P+L+ T G+I+YQEQVMQIAQ+LSGYSL EA Sbjct: 646 GMVDNFIDRKQGRETISYPDIEWQHPCLQPVLEPTYGIILYQEQVMQIAQVLSGYSLGEA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM KQ+ F +GA + GI +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DILRRAMGKKDPVEMAKQRSIFENGAKEKGIDGQLAIKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+KTHYP EF+AA MT +MDN +KI + + + ++PP +N+ F V Sbjct: 766 LLSYQTLWLKTHYPAEFMAAVMTADMDNTDKIVGLVDECARMGLTMLPPDINSGFYHFHV 825 Query: 831 -GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +I Y + AIKGVG I+EA F L DFC+R KKLNRR+LE L+F+ Sbjct: 826 NAQGKIVYGMGAIKGVGEGAIESILEARRQGGEFKDLFDFCARTAKKKLNRRILEKLIFS 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD G R L+ +L N K A+ K ++F +T + +E S Sbjct: 886 GALDRLGPHRAALMHALQNAIKAAEQHAKAELTGQADMFG--------VLTQDPKKIEQS 937 Query: 949 SVR---------FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLA 998 + + E+ LG Y +GHP+ Y K I +G ++ T RG N+ +A Sbjct: 938 YAQVPPWQQQTVLDGERETLGLYLTGHPITQYLKEIRHYVGSSRLQDLSPTPRGKNVTVA 997 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 VVS + T++G+RIG + + + F Sbjct: 998 GFVVSAKVMTTKRGARIGLCKLDDRSAHLDIMLF 1031 >gi|269960606|ref|ZP_06174978.1| DNA polymerase III subunit alpha [Vibrio harveyi 1DA3] gi|269834683|gb|EEZ88770.1| DNA polymerase III subunit alpha [Vibrio harveyi 1DA3] Length = 1159 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1048 (40%), Positives = 627/1048 (59%), Gaps = 45/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+A PA+A+TD NL +++ A +G++ Sbjct: 4 PKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + G+ + + LL + EGY+ L L+S+ YL + Sbjct: 64 PIIGA--DFKMQSD----EFGEE----LTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + +WL E+ +EGLI+L+G +G I +A + +V + + + + F DR Y+ L R Sbjct: 114 PVLDKAWLAEL-SEGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + ++LA ELP+VATN +F+SE+ ++AH++ +A+ + RP+ Sbjct: 173 TGRPDEETYLHFAIELAEEVELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P+ YL+ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + E Sbjct: 233 NYSPEQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E + L K+ GLE RL + +Y RL EL+VI +M F GYFLIV +F Sbjct: 288 ETDFLVMKSREGLEERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + E AD V L+++ + LEG R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFKAEPALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R + V + Sbjct: 527 PIYADSEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 ESIPLDDAPSFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + +L T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + + ++PP +N F V Sbjct: 767 VSYQTLWLKMHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYRFNVD 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +N I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L++AG Sbjct: 827 ENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFS 944 ALD G R L+ SL++ K A + ++F G +D + + Sbjct: 887 ALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQTDMF----GVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 AWPEKVWLEGERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|300923024|ref|ZP_07139091.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1] gi|300420651|gb|EFK03962.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1] Length = 1144 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1040 (41%), Positives = 625/1040 (60%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAGMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG I A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|327480169|gb|AEA83479.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri DSM 4166] Length = 1173 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1064 (40%), Positives = 632/1064 (59%), Gaps = 63/1064 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ +AA PA+A+TD +N+ S ++F + A AGI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I C DI + G + + LL +GY+ L EL+SR + Q V Sbjct: 64 I--CGADIWLA--------GCDEDGPLSRLTLLAMNPKGYRNLTELISRGWTEGQRNDLV 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W++E EGLI L+G G I A +A RL ++++F DR Y+ +QR Sbjct: 114 IIEREWVKE-AAEGLIALSGAKEGEIGHALLNGDEALAASRLAEWREVFADRFYLEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA PLVATN+ FL +ED+EAH+ + + + RPR Sbjct: 173 NRVNDEEHLHAAVALAERSGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDPRRPRT 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK EM +F+DLPEALENTVEIA+RC+ +Q+ LP F E I Sbjct: 233 YSDQQYLKTPEEMAELFADLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ LR + GLE RL + + K Y A Q Y RL+FEL I +M F GYFLIV D Sbjct: 289 DDYLRQVSFEGLEERL-EVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFLIVMD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 348 FIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 408 CMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 467 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R HA G+VI L+ Sbjct: 468 VGMTLE-KAYEMEEPLRDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTKLTDF 526 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597 P+ D VTQF+ +E+AGL+KFDFLGL+TLT+++ +L+ + A++G++ V+ Sbjct: 527 APIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPVN 586 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 587 IDFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 646 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 647 GMVDDFINRKHGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGA 706 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ FI G + NGI +A NIF+L+ KFA YGFNKSH+AAY Sbjct: 707 DMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 766 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+K H+P F+AA ++ +M N +K+ ++ R ++I PP VN F V Sbjct: 767 LVSYQTAWLKAHHPSPFMAAVLSADMHNTDKVVILIEECRSMKLRIDPPDVNVSEFKFTV 826 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ RI Y L A+KGVG I E A+ PF L DFC+R+D K++N+R LE+L+ + Sbjct: 827 NDDGRIVYGLGAVKGVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEALIRS 886 Query: 889 GALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929 GALD G +R LL +++ + A+ ++ + H ++F Sbjct: 887 GALDRLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAEQTARSAESGHMDLFGGLFAE 946 Query: 930 -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 E +++ + S++ R + E+ LG Y +GHP+D Y+ +R+ + + + Sbjct: 947 PEADVYANHRNARELSLKE---RLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIID-LR 1002 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 RG +A ++V+ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARGEQT-IAGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|85059906|ref|YP_455608.1| DNA polymerase III subunit alpha [Sodalis glossinidius str. 'morsitans'] gi|84780426|dbj|BAE75203.1| DNA polymerase III alpha subunit [Sodalis glossinidius str. 'morsitans'] Length = 1160 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1053 (41%), Positives = 624/1053 (59%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + + ++ K AA PA+AITD NL ++F A AGI+ Sbjct: 4 PHFIHLRVHSDYSMIDGLVKIGPLVKKAAALHMPALAITDFTNLCGLVKFYGSAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + +L + GYQ L L+S Y G Sbjct: 64 PIIGADFFV----------QSGMLGDELAELTILAANNVGYQHLTLLISDAYKRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+G G + + + E+ L +++ F DR Y+ L R Sbjct: 114 PVIDRDWLIE-HNEGLILLSGARKGDVGKFLMRGNMPQVEQCLAFYERYFPDRYYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F S +D++AH++ +A+ + + RPR Sbjct: 173 TGRADEESYLHAAVELAARRGLPVVATNDVRFTSPDDFDAHEIRVAIHNGFTLDDAKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+DLPEAL N+VEIARRC+ +++ LP+F E Sbjct: 233 NYSPQQYMRSEEEMCELFADLPEALANSVEIARRCNVTIRLGEYFLPQFPTGEM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L A GLE RLA A + Y +RL EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKCAREGLEERLAFLFPDADMRREKRPAYDERLAIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALNITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDLVIDHVAETYGDDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + + + AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFVAEPQLQAIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + A++G++ +D+ Sbjct: 527 PLYCDGEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRARQGLEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDIEWQHASLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F +GA G+ +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFKAGAESIGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGQYHFHVN 826 Query: 832 -DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I Y + AIKGVG I+EA + D F L D C+R D KKLNRRVLE L+ +G Sbjct: 827 PEGEIVYGIGAIKGVGEGPIEAIIEARNQDGHFRELFDLCARTDIKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A D G R L+ SL + K A ++H A +G + E +VE S Sbjct: 887 AFDRLGPHRAALMNSLCDALKAA--------DQHAKAEAIGQGDMFGVLAEEPAAVEASY 938 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP+ Y + I R G ++ T RG + Sbjct: 939 STVAPWPEQVVLDGERETLGLYLTGHPITQYLREIERYAGGVRLKDIHPTDRGKMVTAVG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V+S + T++G+RIG T + + + F Sbjct: 999 LVLSARVMVTKRGNRIGVCTLDDRSGRLDVMLF 1031 >gi|260775271|ref|ZP_05884168.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260608452|gb|EEX34617.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 1159 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1050 (40%), Positives = 620/1050 (59%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLKVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGTAHGCGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ G+ + + +L + EGY+ L L+S+ YL + Sbjct: 64 PIIGA--DFAMQSE----EFGEE----LTKLTVLAADNEGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ + GLI+L+G SG I +A + +VA+ + + F DR ++ L R Sbjct: 114 PVIDKQWLAEL-SAGLIVLSGAKSGEIGKALLKGNHKVAQNCADFYHQHFADRFFLELTR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + ++ A +LP+VATN+ + L E +EAH++ +A+ + RP+ Sbjct: 173 TGRADEETYLHFALEFAEKEQLPVVATNDVVILDETTFEAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + YL++ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + E Sbjct: 233 NYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E L K+ GLE RL + +Y +RL EL VI M F GYFLIV +F Sbjct: 288 ETEFLVKKSEEGLEERLEFLFPDEEERAKRRPEYDERLKVELEVINNMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + E AD V L+++ + LEG R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R + V + Sbjct: 527 PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 ESIPLDDAASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +V N +RK+G+E I S+ ++DP T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 647 MVDNFIDRKHGREAISYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEDGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N Sbjct: 763 AYALVSYQTLWLKMHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V +N I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDENGAIVYGIGAIKGVGEGPIEAILEARNKGGHFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEK 942 ++AGALD G R ++ SL++ K A + ++F K T K Sbjct: 883 IYAGALDRLGPHRAAMMASLNDAVKAASQYHQAEAFGQSDLFGVLTEAPEEVEHKYT--K 940 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V+ Sbjct: 941 VPAWPEKVWLEGERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E F Sbjct: 1001 AARVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|330504229|ref|YP_004381098.1| DNA polymerase III subunit alpha [Pseudomonas mendocina NK-01] gi|328918515|gb|AEB59346.1| DNA polymerase III subunit alpha [Pseudomonas mendocina NK-01] Length = 1176 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1067 (40%), Positives = 634/1067 (59%), Gaps = 66/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL++H+ YSL++G + + ++ +A PA+A+TD +N+ S ++F + A AG++P Sbjct: 4 AFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMGAGVKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I C DI M + + P + + LL A+GY+ L EL+SR + Q V Sbjct: 64 I--CGADIWMA-----SAEEDGP---LTRLTLLAMNAKGYRNLTELISRGWAEGQSNDLV 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+++ EGLI L+G G + +A +AE RL + +F DR Y+ +QR Sbjct: 114 IIQRDWVKD-AAEGLIALSGAREGEVGQALLGGDEVLAEARLREWMSVFPDRFYLEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R D V LA E PLVATN+ F+ ++D+EAH+ + + + RPR Sbjct: 173 SRVGDEEYLHAAVALADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +Q+ LP F I Sbjct: 233 YSDQQYLKSAEEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMGI---- 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ LR+ + GLE RL + + K Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DDYLRHASFEGLEERL-EVLLPKDTPDYEAKKQVYIDRLNFELDIIIQMGFPGYFLIVMD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 348 FIQWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV RA Y DRL K+IP + Sbjct: 408 CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKMIPFE 467 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + RE D + ++S KLEG+ R HA G+VI L+ Sbjct: 468 VGMTLE-KAYEMEEPLREFLKNDEEAQEIWDMSLKLEGVVRGTGKHAGGVVIAPTKLTDF 526 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGV 594 P+ D VTQF+ +E+AGL+KFDFLGL+TLT+++ +++ + A Sbjct: 527 SPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGASDEE 586 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V++ IP DD +TY +L T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP Sbjct: 587 LVNIDFIPLDDKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGP 646 Query: 655 IDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ++ GY+L Sbjct: 647 LQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMGGYTL 706 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 +AD+LRRAMGKK EEM KQ+ FI G + NGI +A NIF+L+ KFA YGFNKSH+A Sbjct: 707 GQADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDAELAGNIFDLVEKFAGYGFNKSHSA 766 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R ++I PP VN Sbjct: 767 AYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVILVEECRNMKLRIDPPDVNVSEFK 826 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D+ RI Y L A+KGVG I+E A+ PF L DFC+RVD +++N+R LE+L Sbjct: 827 FTVNDDGRIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLRRINKRTLEAL 886 Query: 886 VFAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 + +GALD G +R LL S++ + A+ ++ + H ++F Sbjct: 887 IRSGALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDLFGGL 946 Query: 930 ----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 E +++ + ++ R + E+ LG Y SGHP+D Y+ +R+ + E Sbjct: 947 FAEPEADVYANHRKARELPIKE---RLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIVE 1003 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + R +A M+V+ + K +KG ++G++T + + EA+ F Sbjct: 1004 -LKPARDTQT-IAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1048 >gi|153947435|ref|YP_001400012.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis IP 31758] gi|152958930|gb|ABS46391.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis IP 31758] Length = 1160 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1050 (41%), Positives = 619/1050 (58%), Gaps = 48/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L EGYQ L L+S Y G Sbjct: 64 PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187 I WL + EGLI+L+GG G + + F +QV + L F ++ F D Y+ L Sbjct: 114 PIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDCYYLELI 171 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R + V LA LP+VATN+ F+ E D++AH++ +A+ + RP Sbjct: 172 RTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRP 231 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F E Sbjct: 232 KNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM----- 286 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L KA GLE RL + +Y +RLD EL VI +M F GYFLIV + Sbjct: 287 STEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP D Sbjct: 407 CMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLD 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 467 PGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D Sbjct: 526 APLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPID 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 586 IASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL A Sbjct: 646 GMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ I Y + AIKGVG I+EA + F L D C+RVD+KKLN+R+LE L+ + Sbjct: 826 NDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMS 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947 GA D G R L+ SL + K A K ++F G +D + S N Sbjct: 886 GAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANV 941 Query: 948 ----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V + E+ LG Y +GHP+ Y K I R G ++ T RG +V+ Sbjct: 942 PPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVI 1001 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG T + + E F Sbjct: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|332095123|gb|EGJ00155.1| DNA polymerase III subunit alpha [Shigella boydii 5216-82] Length = 1144 Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1040 (41%), Positives = 624/1040 (60%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAVNNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL N K A K ++F G ++ E +E S V + Sbjct: 884 NSLGNALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG I A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|78485459|ref|YP_391384.1| DNA polymerase III, alpha subunit [Thiomicrospira crunogena XCL-2] gi|78363745|gb|ABB41710.1| DNA polymerase III, alpha subunit [Thiomicrospira crunogena XCL-2] Length = 1158 Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1051 (41%), Positives = 627/1051 (59%), Gaps = 71/1051 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YS+++ + + + + QQPA+A+TD N+F+ ++F A AGI+PI Sbjct: 4 FVHLHVHSEYSVVDSTIRVKSAISLAQKSQQPALALTDQMNMFALVKFYTAAMDAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----GK 126 IG L I+ +D V +V L +GY L L+S YL +Q Sbjct: 64 IGSDLLIEAEDG------------NVFKVVCLCQNDQGYLNLSHLISMAYLKNQKVVQND 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E EGLI+L+GG G + +A +A KR+ + F DR Y+ L Sbjct: 112 MKALIKQEWLAEF-NEGLIILSGGKDGDVGQAILAEKPNLAAKRVSWWASYFPDRFYLEL 170 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R R + + V +A +ELP+VATN+ F ED++AH+V + + ++ +R Sbjct: 171 IRTGRDKEELYIAGAVDVAQRYELPVVATNDIRFEQAEDFDAHEVRVCIHDGYILDDPNR 230 Query: 246 P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 P R + + Y ++ EMV +F D+PEA+ENTVEIA+RC+ L + LP F E D Sbjct: 231 PKRYSEEQYYRSSEEMVKLFEDIPEAIENTVEIAKRCNVSLTLGTYFLPDFPVPEGLTLD 290 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E + ++ + L L+ A A+ A Y RL FEL++I +M F GYF IVA Sbjct: 291 EYFILESQKGLDERLNFLFGDLSPEAFAEKRKA--YDDRLKFELDIITQMGFPGYFFIVA 348 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQW K + +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 349 DFIQWGKNHQVPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 408 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RRDEVI YV +YG + V+QI+TFG++ AKA +RDVGR L Y VD + KLIPN Sbjct: 409 FCMERRDEVIDYVARQYGQDHVSQIVTFGTMAAKAVVRDVGRVLGNGYGMVDSIAKLIPN 468 Query: 482 DPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 D + LQ D + + +E + V L++++ KLEG R+ HA G+VIG +PL Sbjct: 469 DLG--IKLQGALDQEEQLQERYDNEEDVRLLIDLALKLEGTVRNTGKHAGGVVIGPKPLD 526 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---AQRGVK-- 595 P+ + VTQ + +E AGL+KFDFLGL+TLT++ +L F+ Q G + Sbjct: 527 HFCPVLCEPDGSSVVTQLDKNDVETAGLVKFDFLGLRTLTIIDWALHFINEGKQPGDEGF 586 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V++ IP DD +T+ L+ T T G+FQLESSGM+ + ++PDC EDIIALV+L+RPGP+ Sbjct: 587 VEIERIPLDDSQTFDLIKTGKTTGVFQLESSGMQNLIVRLRPDCFEDIIALVALFRPGPL 646 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 ++ +V N RK+GKEK+ H + +L+ T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 647 ESGMVDNFIARKHGKEKVSYPDAQYQHDSLKTILEPTYGVILYQEQVMQIAQVLAGYTLG 706 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F GA KN + +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 707 GADMLRRAMGKKKPEEMAKQRSIFKDGAIKNNVDGDLAMKIFDLVEKFAGYGFNKSHSAA 766 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQ+AW+KTHYP EF+AA ++ +MDN +K+ + I + PS+N + F Sbjct: 767 YALVSYQSAWLKTHYPAEFMAAQISSDMDNTDKVVHMVNECYAMGIDVAQPSINEGEIHF 826 Query: 829 KV--GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 K G + Y L AIKGVG + I+ E + P+ L DFC RV ++K+N+RV+E+L Sbjct: 827 KAIRGQKAVRYGLGAIKGVGESALEGIVAERKQNGPYQDLFDFCLRV-TRKVNKRVIEAL 885 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGA+DC +R +L S+ + A+ +K+ ++F + F Sbjct: 886 ISAGAMDCIHNNRQAMLDSVGMALQKAEQKQKDEEAGQTDLFGD----------VTSFEA 935 Query: 946 ENSS-----------VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--- 991 EN S +R + E+ VLG Y +GHP+++Y+ L KM E+ ++ +R Sbjct: 936 ENESKLVDVPEMPEKLRLKGEKDVLGLYMTGHPIEIYREELDKM----VEQKLSALRPEK 991 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 N A ++V + K TR GSR+G++ + Sbjct: 992 WNKKWAAGLIVEARNKVTRNGSRMGFLAIDD 1022 >gi|261822584|ref|YP_003260690.1| DNA polymerase III subunit alpha [Pectobacterium wasabiae WPP163] gi|261606597|gb|ACX89083.1| DNA polymerase III, alpha subunit [Pectobacterium wasabiae WPP163] Length = 1160 Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1051 (41%), Positives = 621/1051 (59%), Gaps = 50/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ K AA PA+AITD NL ++F A AG++ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG ++ D L + + +L EGYQ L L+S Y G Sbjct: 64 PIIGADFYVE-SDELG---------DELAHLTVLAMNNEGYQNLTLLISHAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+GG G + R + AE+ + +++ F R Y+ L R Sbjct: 114 PTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCVAFYQEHFPQRYYLELTR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + V+LA + LP+VATN F+S +D++AH++ +A+ + R Sbjct: 173 TSRPDE--ESYIHSAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ LP+F E Sbjct: 231 PRHYSPQQYMRSEEEMCELFADIPEALVNSVEIAKRCNVTIRLGEYFLPQFPTGEM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L + GLE RL + +Y +RLD EL VI +M F GYFLIV Sbjct: 287 -STADFLVQCSKKGLEDRLEFLFPDPEVRAARRLEYDERLDIELGVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 406 FCMEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K + Sbjct: 525 FAPLYCDSEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQEPI 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EM KQ+ F GA G++ +AV IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D G R L+ SL + K A K ++F G +D + S Sbjct: 885 SGAFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYST 940 Query: 948 -----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 V + E+ LG Y +GHP+ Y K I R G ++ T RG +V Sbjct: 941 VPPWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLV 1000 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + T++G+RIG T + + E F Sbjct: 1001 LAARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031 >gi|229837766|ref|ZP_04457926.1| DNA polymerase III, alpha chain [Yersinia pestis Pestoides A] gi|229840988|ref|ZP_04461147.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843089|ref|ZP_04463239.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis str. India 195] gi|229903544|ref|ZP_04518657.1| DNA polymerase III, alpha chain [Yersinia pestis Nepal516] gi|229679314|gb|EEO75417.1| DNA polymerase III, alpha chain [Yersinia pestis Nepal516] gi|229689965|gb|EEO82024.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis str. India 195] gi|229697354|gb|EEO87401.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704143|gb|EEO91155.1| DNA polymerase III, alpha chain [Yersinia pestis Pestoides A] gi|320014193|gb|ADV97764.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 1160 Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1050 (41%), Positives = 619/1050 (58%), Gaps = 48/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L EGYQ L L+S Y G Sbjct: 64 PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187 I WL + EGLI+L+GG G + + F +QV + L F ++ F D Y+ L Sbjct: 114 PIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDCYYLELI 171 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R + V LA LP+VATN+ F+ E D++AH++ +A+ + RP Sbjct: 172 RTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRP 231 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F E Sbjct: 232 KNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM----- 286 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L KA GLE RL + +Y +RLD EL VI +M F GYFLIV + Sbjct: 287 STEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP D Sbjct: 407 CMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLD 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 467 PGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D Sbjct: 526 APLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPID 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 586 IASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL A Sbjct: 646 GMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ I Y + AIKGVG I+EA + F L D C+RVD+KKLN+R+LE L+ + Sbjct: 826 NDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMS 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947 GA D G R L+ SL + K A K ++F G +D + S N Sbjct: 886 GAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANV 941 Query: 948 ----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V + E+ LG Y +GHP+ Y K I R G ++ T RG +V+ Sbjct: 942 PPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVI 1001 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG T + + E F Sbjct: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|37524688|ref|NP_928032.1| DNA polymerase III subunit alpha [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784113|emb|CAE12982.1| DNA polymerase III alpha subunit [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1160 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1049 (41%), Positives = 622/1049 (59%), Gaps = 46/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ K+A PA AITD NL + F A AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTSPLVKKVAQLGMPAFAITDFTNLCGLVRFYGSAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D ++ L S+ +L GY L L+S Y G Sbjct: 64 PIIGA--DFYVESELLGDEHA--------SLTILARNNTGYHNLTLLISEAYQKGYGAIG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL EGLI+L+GG G + + + + ++ L +++ F Y+ L R Sbjct: 114 PTIKQEWLIN-HKEGLILLSGGRMGDVGKFLLRGNQAMVDQCLEFYQEHFPGCYYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA LP+VATN+ F+ ED++AH++ +A+ ++ RP+ Sbjct: 173 TGRADEESYLHAAVALATEKSLPVVATNDVCFIDGEDFDAHEIRVAIHDGYTLADPKRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL++ EM +F+D+PEALEN+VEIA+RC+ +++ LP+F E Sbjct: 233 NYSPQQYLRSEQEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGEM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L N++ GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDYLINRSQQGLEERLAFLYPDPKVRAEKRPEYDERLDIELRVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V + YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDLVIDHVADMYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFS 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D+ Sbjct: 527 PLYCDPEGLNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRTKKGLEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLNDAKSFDMLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+ I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREELSYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA K GI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFEDGAKKLGINGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLIDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA D F L D C+RVD+KKLNRRV+E L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARQKDGYFRELFDLCARVDTKKLNRRVMEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D G R L+ SL++ K A K ++F G ++ + S N S Sbjct: 887 AFDRLGPHRAALMSSLEDALKAADQHAKAEATGQTDMF----GVLAEAPEEVERSYANIS 942 Query: 950 -----VRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y K I R ++ T RG + +V++ Sbjct: 943 QWPEQIVLDGERETLGLYLTGHPITRYLKEIERYTSGLRLKDVNPTPRGQVTTVIGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 SKVIITKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|227326551|ref|ZP_03830575.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 1160 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1049 (41%), Positives = 618/1049 (58%), Gaps = 46/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ K AA PA+AITD NL ++F A AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG ++ D L + + +L GYQ L L+S Y G Sbjct: 64 PIIGADFCVE-SDELG---------DELAHLTVLAMNNAGYQNLTLLISHAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+GG G + R + AE+ L +++ F R Y+ L R Sbjct: 114 PTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA H +P+VATN F+S +D++AH++ +A+ + RPR Sbjct: 173 TSRPDEESYLHAAVELATKHGIPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L + GLE RL + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVQCSKKGLEERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K +D+ Sbjct: 527 PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM KQ+ F GA G++ +AV IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 A D G R L+ SL + K A K ++F G +D + S Sbjct: 887 AFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYSTVP 942 Query: 948 ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y K I R G ++ T RG +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031 >gi|197119463|ref|YP_002139890.1| DNA polymerase III subunit alpha [Geobacter bemidjiensis Bem] gi|197088823|gb|ACH40094.1| DNA polymerase III, alpha subunit [Geobacter bemidjiensis Bem] Length = 1156 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1041 (39%), Positives = 628/1041 (60%), Gaps = 26/1041 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S +FVHL +HS YSLL+GA+ + ++L K+ PA+A+TD N+F LEF K G+ Sbjct: 3 STNFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-K 126 +PI+G ++ I QD + ++LL G++ L LVS Y +G Sbjct: 63 KPILGSEVYIAPQDRFLKQAPSSPGQASSYHLILLCENMTGFKNLSYLVSAGY--KEGFY 120 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYV 184 + RI L + EGLI+L+ G + A+ +++ E R + + F Y+ Sbjct: 121 RRPRIDKELLLK-HKEGLIVLSACLQGEV--AYLAGRNKMDEARAAASWYAENFPGSYYI 177 Query: 185 NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ ++ ++ +++++A +LPLVATN+ +L+ ED AH++L+ + +S Sbjct: 178 ELQENKLPEQDIANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDP 237 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + D Y+K EM F PEA+ENTV+IA RC+ P + E + Sbjct: 238 THMAFSVDEFYVKTPQEMAQAFHYAPEAIENTVKIAERCNLEFDFKTYYFPAYEAPEGET 297 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ E E A GL RL + I Q Y RL EL+ I +M F GYFLI Sbjct: 298 LDQQLERE----ATVGLVERLKKIRIKYNLTEEQEQAYHARLRIELDCIKQMGFPGYFLI 353 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D Sbjct: 354 VADFINWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDID 413 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFCQDRR+EVI+Y+ KYG E+V QIITFG++ A+ +RDVGRAL + + +VDR+ KL+ Sbjct: 414 VDFCQDRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLV 473 Query: 480 PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P ++L +A+ + + +E ADP V ++ ++ +LEGL RHASTHAAG+V+ R Sbjct: 474 PE--VLGITLDKALEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQ 531 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 + + P+Y+D ++ TQ++MK++EK GL+KFDFLGLK LT++ + + + D Sbjct: 532 MEEFCPVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFD 591 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++L+ DD E+Y LL T G+FQLESSGM++ L ++P C EDIIA+ +LYRPGP+ + Sbjct: 592 ITLLRDDDEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGS 651 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + RK+G+++ V P ++P+LK+T GVI+YQEQVMQI++ L+GYSL AD+LRR Sbjct: 652 GMVDDFIERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRR 711 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK E+M K++++F+ G+ K G+ IF+L+AKFA+YGFNKSH+AAYA+++YQ Sbjct: 712 AMGKKDAEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQ 771 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPVEF+AA +T +M N +K+ K D R+ I+++PP +N F+V D + Sbjct: 772 TAFLKAHYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVLDKAM 831 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L A+K VG I+EA D+PF L DFC RVD +++N+RV+E+L+ GA DC G Sbjct: 832 RFGLGAVKNVGEGAIEAIIEARGDEPFKDLFDFCERVDLRRVNKRVIEALIKCGAFDCTG 891 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVRF 952 R QL+ L++ Q V++ R + ++F +G L + + R Sbjct: 892 AKRSQLMAGLEDAASAGQRVQQERESAQASLFGAAEIVRGANGGGNRLPEIPEWDEKYRL 951 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ +GF+ +GHPLD Y +R+ + + +R+ + S ++ T+KG Sbjct: 952 GCEKEAIGFFITGHPLDRYVADMRRFSSVDCSTILDAKEKSEVRICGVPASVKELITKKG 1011 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 R+ ++ + E FP Sbjct: 1012 DRMAFLALEDLVGSVEVVVFP 1032 >gi|323165885|gb|EFZ51667.1| DNA polymerase III subunit alpha [Shigella sonnei 53G] Length = 1144 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1040 (41%), Positives = 625/1040 (60%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG I A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|300816224|ref|ZP_07096447.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1] gi|309796361|ref|ZP_07690770.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7] gi|312970285|ref|ZP_07784467.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70] gi|300531431|gb|EFK52493.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1] gi|308120065|gb|EFO57327.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7] gi|310337783|gb|EFQ02894.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70] gi|323176499|gb|EFZ62091.1| DNA polymerase III subunit alpha [Escherichia coli 1180] Length = 1144 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1040 (41%), Positives = 625/1040 (60%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG I A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|300824093|ref|ZP_07104213.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7] gi|300523370|gb|EFK44439.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7] gi|315616331|gb|EFU96949.1| DNA polymerase III subunit alpha [Escherichia coli 3431] gi|323160196|gb|EFZ46155.1| DNA polymerase III subunit alpha [Escherichia coli E128010] gi|323181692|gb|EFZ67106.1| DNA polymerase III subunit alpha [Escherichia coli 1357] Length = 1144 Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1040 (41%), Positives = 625/1040 (60%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG I A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|146308059|ref|YP_001188524.1| DNA polymerase III subunit alpha [Pseudomonas mendocina ymp] gi|145576260|gb|ABP85792.1| DNA polymerase III, alpha subunit [Pseudomonas mendocina ymp] Length = 1176 Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1067 (41%), Positives = 632/1067 (59%), Gaps = 66/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL++H+ YSL++G + + ++ +A PA+A+TD +N+ S ++F + A AG++P Sbjct: 4 AFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMGAGVKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I C DI M + + P + + LL +GY+ L EL+SR + Q V Sbjct: 64 I--CGADIWMA-----SAEEDGP---LTRLTLLAMNPKGYRNLTELISRGWAEGQSNDLV 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+++ EGLI L+G G + A +AE RL + +F DR Y+ +QR Sbjct: 114 IIQRDWVKD-AAEGLIALSGAREGEVGLALLAGDEALAETRLREWMAVFPDRFYLEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R D V LA E PLVATN+ F+ ++D+EAH+ + + + RPR Sbjct: 173 SRVGDEEYLHAAVSLADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRH 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK +EM +FSDLPEALENTVEIA+RC+ +Q+ LP F I Sbjct: 233 YSDQQYLKTPAEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMGI---- 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ LR+ + GLE RL Q + K Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DDYLRHASFEGLEERL-QVLLPKDTPDYEAKKQVYVDRLNFELDIIIQMGFPGYFLIVMD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 348 FIQWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV RA Y DRL K+IP + Sbjct: 408 CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKMIPFE 467 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + RE D + ++S KLEG+ R HA G+VI L+ Sbjct: 468 VGMTLE-KAYEMEEPLREFLKNDEEAQEIWDMSLKLEGIVRGTGKHAGGVVIAPTKLTDF 526 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGV 594 P+ D VTQF+ +E+AGL+KFDFLGL+TLT+++ +++ + A Sbjct: 527 SPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGAADED 586 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V++ IP DD +TY +L T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP Sbjct: 587 LVNIDFIPLDDKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGP 646 Query: 655 IDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + NRK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+++GY+L Sbjct: 647 LQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGVILYQEQVMQIAQVMAGYTL 706 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ FI G + NGI +A NIF+L+ KFA YGFNKSH+A Sbjct: 707 GGADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSA 766 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R ++I PP VN Sbjct: 767 AYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVILVEECRNMKLRIDPPDVNVSEFK 826 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D+ RI Y L A+KGVG I+E A+ PF L DFC+RVD K++N+R LE+L Sbjct: 827 FTVNDDGRIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLKRINKRTLEAL 886 Query: 886 VFAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 + +GALD G +R LL S++ + A+ ++ + H ++F Sbjct: 887 IRSGALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDLFGGL 946 Query: 930 ----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 E +++ + ++ R + E+ LG Y SGHP+D Y+ +R+ + E Sbjct: 947 FAEPEADVYANHRKARELPIKE---RLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIVE 1003 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + R +A M+V+ + K +KG ++G++T + + EA+ F Sbjct: 1004 -LKPARDTQT-IAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1048 >gi|163801794|ref|ZP_02195691.1| DNA polymerase III subunit alpha [Vibrio sp. AND4] gi|159174302|gb|EDP59106.1| DNA polymerase III subunit alpha [Vibrio sp. AND4] Length = 1159 Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1048 (40%), Positives = 624/1048 (59%), Gaps = 45/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + ++ K+A PA+A+TD NL +++ A G++ Sbjct: 4 PKFIHLRVHSDYSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGAAHGNGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + G+ + + LL + EGY+ L L+S+ YL + Sbjct: 64 PIIGA--DFKMQSD----EFGEE----LTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E+ +EGLI+L+G +G I +A + VAE + +++ F DR Y+ L R Sbjct: 114 PVIDKTWLAEL-SEGLIVLSGAKNGEIGKALLKGNRTVAESCVAFYQEYFPDRFYLELVR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+ A +LP+VATN +F+ EE ++AH++ +A+ + RP+ Sbjct: 173 TGRPDEETYLHFAVEFANETQLPVVATNEVVFIGEELFDAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P+ YL+ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + E Sbjct: 233 NYSPEQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E + L K+ GLE RL + +Y RL EL+VI +M F GYFLIV +F Sbjct: 288 ETDFLVMKSREGLEERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNSIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFKAEPALPELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R + + + Sbjct: 527 PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPIQI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 ESIPLVDAASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + +L T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTH+P EF+AA MT +MDN EK+ + + + ++PP +N F V Sbjct: 767 VSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYRFNVD 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L++AG Sbjct: 827 QSGAIVYGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFS 944 ALD G R L+ SL++ K A + ++F G +D + + Sbjct: 887 ALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQTDMF----GVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 AWPEKVWLEGERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSRIG +T + + E F Sbjct: 1003 RVMTTKRGSRIGIMTLDDRSGRMEVMLF 1030 >gi|51597303|ref|YP_071494.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis IP 32953] gi|186896408|ref|YP_001873520.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis PB1/+] gi|51590585|emb|CAH22226.1| DNA polymerase III, alpha chain [Yersinia pseudotuberculosis IP 32953] gi|186699434|gb|ACC90063.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis PB1/+] Length = 1171 Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1056 (41%), Positives = 623/1056 (58%), Gaps = 49/1056 (4%) Query: 4 YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 YL+ + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 9 YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 69 HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181 G I WL + EGLI+L+GG G + + F +QV + L F ++ F D Sbjct: 119 GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDC 176 Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R R + V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 177 YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F E Sbjct: 237 VDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGE 296 Query: 300 CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E+ L KA GLE RL + +Y +RLD EL VI +M F GY Sbjct: 297 M-----STEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGY 351 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMP Sbjct: 352 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMP 411 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 412 DFDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 472 KLIPLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 531 TKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKT 590 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+R Sbjct: 591 GLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSG Sbjct: 651 PGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 710 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKS Sbjct: 711 YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKS 770 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 771 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830 Query: 825 CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882 F V D+ I Y + AIKGVG I+EA + F L D C+RVD+KKLN+R+L Sbjct: 831 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRIL 890 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+ SL + K A K ++F G +D + Sbjct: 891 EKLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLADAPEQVE 946 Query: 943 FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996 S N V + E+ LG Y +GHP+ Y K I R G ++ T RG Sbjct: 947 QSYANVPPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTT 1006 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|22126996|ref|NP_670419.1| DNA polymerase III subunit alpha [Yersinia pestis KIM 10] gi|45442559|ref|NP_994098.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Microtus str. 91001] gi|108806532|ref|YP_650448.1| DNA polymerase III subunit alpha [Yersinia pestis Antiqua] gi|108813101|ref|YP_648868.1| DNA polymerase III subunit alpha [Yersinia pestis Nepal516] gi|149366940|ref|ZP_01888973.1| DNA polymerase III, alpha chain [Yersinia pestis CA88-4125] gi|162420959|ref|YP_001607757.1| DNA polymerase III subunit alpha [Yersinia pestis Angola] gi|165927052|ref|ZP_02222884.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165939826|ref|ZP_02228366.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166011915|ref|ZP_02232813.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211235|ref|ZP_02237270.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400078|ref|ZP_02305596.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419915|ref|ZP_02311668.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425342|ref|ZP_02317095.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218928227|ref|YP_002346102.1| DNA polymerase III subunit alpha [Yersinia pestis CO92] gi|270487325|ref|ZP_06204399.1| DNA polymerase III subunit alpha [Yersinia pestis KIM D27] gi|294503076|ref|YP_003567138.1| DNA polymerase III subunit alpha [Yersinia pestis Z176003] gi|21960041|gb|AAM86670.1|AE013912_14 DNA polymerase III, alpha subunit [Yersinia pestis KIM 10] gi|45437424|gb|AAS62975.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Microtus str. 91001] gi|108776749|gb|ABG19268.1| DNA polymerase III, alpha subunit [Yersinia pestis Nepal516] gi|108778445|gb|ABG12503.1| DNA polymerase III, alpha subunit [Yersinia pestis Antiqua] gi|115346838|emb|CAL19724.1| DNA polymerase III, alpha chain [Yersinia pestis CO92] gi|149290554|gb|EDM40630.1| DNA polymerase III, alpha chain [Yersinia pestis CA88-4125] gi|162353774|gb|ABX87722.1| DNA polymerase III, alpha subunit [Yersinia pestis Angola] gi|165912229|gb|EDR30866.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165920948|gb|EDR38172.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165989181|gb|EDR41482.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207006|gb|EDR51486.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962656|gb|EDR58677.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050786|gb|EDR62194.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055742|gb|EDR65526.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262361114|gb|ACY57835.1| DNA polymerase III subunit alpha [Yersinia pestis D106004] gi|262365354|gb|ACY61911.1| DNA polymerase III subunit alpha [Yersinia pestis D182038] gi|270335829|gb|EFA46606.1| DNA polymerase III subunit alpha [Yersinia pestis KIM D27] gi|294353535|gb|ADE63876.1| DNA polymerase III subunit alpha [Yersinia pestis Z176003] Length = 1171 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1056 (41%), Positives = 623/1056 (58%), Gaps = 49/1056 (4%) Query: 4 YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 YL+ + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 9 YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 69 HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181 G I WL + EGLI+L+GG G + + F +QV + L F ++ F D Sbjct: 119 GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDC 176 Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R R + V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 177 YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F E Sbjct: 237 VDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGE 296 Query: 300 CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E+ L KA GLE RL + +Y +RLD EL VI +M F GY Sbjct: 297 M-----STEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGY 351 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMP Sbjct: 352 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMP 411 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 412 DFDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 472 KLIPLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 531 TKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKT 590 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+R Sbjct: 591 GLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSG Sbjct: 651 PGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 710 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKS Sbjct: 711 YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKS 770 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 771 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830 Query: 825 CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882 F V D+ I Y + AIKGVG I+EA + F L D C+RVD+KKLN+R+L Sbjct: 831 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRIL 890 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+ SL + K A K ++F G +D + Sbjct: 891 EKLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLADAPEQVE 946 Query: 943 FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996 S N V + E+ LG Y +GHP+ Y K I R G ++ T RG Sbjct: 947 QSYANVPPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTT 1006 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|332098772|gb|EGJ03732.1| DNA polymerase III subunit alpha [Shigella boydii 3594-74] Length = 1144 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1040 (41%), Positives = 625/1040 (60%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNG++ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGVNAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG I A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|332097598|gb|EGJ02575.1| DNA polymerase III subunit alpha [Shigella dysenteriae 155-74] Length = 1144 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1040 (41%), Positives = 623/1040 (59%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAVNNTGYQNLTLLISKAYQRGYGPAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKSAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL N K A K ++F G ++ E +E S V + Sbjct: 884 NSLGNALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG I A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|170023330|ref|YP_001719835.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis YPIII] gi|169749864|gb|ACA67382.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis YPIII] Length = 1171 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1056 (41%), Positives = 623/1056 (58%), Gaps = 49/1056 (4%) Query: 4 YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 YL+ + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 9 YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 69 HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181 G I WL + EGLI+L+GG G + + F +QV + L F ++ F D Sbjct: 119 GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGK-FLLRGNQVQVDQCLAFYQEHFPDC 176 Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R R + V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 177 YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F E Sbjct: 237 VDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGE 296 Query: 300 CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E+ L KA GLE RL + +Y +RLD EL VI +M F GY Sbjct: 297 M-----STEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGY 351 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMP Sbjct: 352 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMP 411 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 412 DFDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 472 KLIPLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 531 TKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINVRRAKT 590 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+R Sbjct: 591 GLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSG Sbjct: 651 PGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 710 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKS Sbjct: 711 YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKS 770 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 771 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830 Query: 825 CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882 F V D+ I Y + AIKGVG I+EA + F L D C+RVD+KKLN+R+L Sbjct: 831 LYHFHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRIL 890 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+ SL + K A K ++F G +D + Sbjct: 891 EKLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLADAPEQVE 946 Query: 943 FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996 S N V + E+ LG Y +GHP+ Y K I R G ++ T RG Sbjct: 947 QSYANVPPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTT 1006 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|321222185|gb|EFX47257.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 1144 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1040 (41%), Positives = 621/1040 (59%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K A+ PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVH--- 57 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 N + ++ + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 58 NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R + + E+ + ++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ FL +D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALENTVEIA+RC+ +++ LP+F + E+ L KA GL Sbjct: 230 MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I++A + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQTDMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG A +V++ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|269138108|ref|YP_003294808.1| DNA polymerase III, alpha subunit [Edwardsiella tarda EIB202] gi|267983768|gb|ACY83597.1| DNA polymerase III, alpha subunit [Edwardsiella tarda EIB202] gi|304558152|gb|ADM40816.1| DNA polymerase III alpha subunit [Edwardsiella tarda FL6-60] Length = 1162 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1057 (40%), Positives = 628/1057 (59%), Gaps = 60/1057 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL VHS YS+++G ++ K+AA PA AITD NL ++F A AGI+ Sbjct: 4 PRFIHLHVHSDYSMIDGLAKTAPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P++G + + + +T + ++ +L EGYQ L +L+S Y G + Sbjct: 64 PLVGADVLV----------RSETMGDELSALTILACDNEGYQNLTQLISHAYQRGYGAEG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL GLI+L+G G + + + + + + +++ F D ++ L R Sbjct: 114 PTIDRDWLIAY-RAGLILLSGARHGDVGKLLLRGNQTLVGECVDFYQQHFPDSYFLELVR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + V+LA +LPLVATN+ FL D++AH++ +A+ + R Sbjct: 173 TGRPDE--ESYLHLAVELAQQRDLPLVATNDVRFLEASDFDAHEIRVAIHDGYTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR + Y+++ EM +F+DLPEAL+N+VEIA+RC+ +++ LP+F E Sbjct: 231 PRNYSAQQYMRSEEEMCELFADLPEALQNSVEIAKRCNVTIRLGQYFLPQFPTGEM---- 286 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L KA GLE RL+ + A+ Y +RL+ EL VI +M F GYFLIV Sbjct: 287 -STEDFLVKKAHEGLEERLSFLFPDEADRARLRPPYDERLEIELKVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 406 FCMEKRDRVIDHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R + V Sbjct: 525 FAPLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRARQGLDPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E++ H + P+L+ T GVI+YQEQVMQIAQ+L+GYSL Sbjct: 645 SGMVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA NG++ +A++IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADLLRRAMGKKKPEEMAKQRSVFEEGARNNGVNGELAMHIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFH 824 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESL 885 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRV+E L Sbjct: 825 VNDEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARTDTKKLNRRVMEKL 884 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + +GA D G R L+ SL++ K A+ + ++F G ++ E V Sbjct: 885 IMSGAFDRLGPHRAALMSSLNDALKAAEQHARAEAIGQADMF----GVLAE----EPEQV 936 Query: 946 ENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNI 995 E S + + E+ LG Y +GHP+ Y K I R G ++ T RG Sbjct: 937 EQSYGSVPPWPVQMVLDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTDRGKMT 996 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V+ + T++G+RIG T + + E F Sbjct: 997 TAVGLVLGARVMTTKRGNRIGMCTLDDRSGRLEVMLF 1033 >gi|309787142|ref|ZP_07681754.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617] gi|308924720|gb|EFP70215.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617] Length = 1144 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1040 (41%), Positives = 625/1040 (60%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ + Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEED 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVSLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG I A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|297569370|ref|YP_003690714.1| DNA polymerase III, alpha subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925285|gb|ADH86095.1| DNA polymerase III, alpha subunit [Desulfurivibrio alkaliphilus AHT2] Length = 1192 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1048 (41%), Positives = 631/1048 (60%), Gaps = 45/1048 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VH+ YS+L+GA+ L+ +L + A+AITD +F ALEF KA AGI+P Sbjct: 14 GFVHLHVHTQYSMLDGAIRLDRLLAQCKEYGMEAVAITDHGAMFGALEFYVKAKKAGIKP 73 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+ + D + K+ +VLL EGYQ L++L S + Sbjct: 74 IIGCEFYVAPAD--RRDKSAKSAGAAAHHLVLLAMNNEGYQNLMKLAS-CAQFEGFHYKP 130 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L +GLI LT G + A+ +KLF DRLY+ LQ Sbjct: 131 RIDYELLSR-HNQGLIALTACLHGQLPMLLTRGDYDGAKAAAGKLQKLFPDRLYLELQE- 188 Query: 190 RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 ++ E Q V +LA +LPLVATN+ +L+ E+ +AH+VL+ + ++ + Sbjct: 189 ---NKIAEQQTVNDGLKKLAAELKLPLVATNDCHYLNREEAQAHEVLLCIQTGKTMADQG 245 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + D + K+ +EM FS PEA+ TV++A RC+ L + + P F E + + Sbjct: 246 RFRFSTDELFFKSPAEMKKSFSHCPEAIAETVKVAARCNVELDLSSHHFPHFPIPEGETL 305 Query: 304 QKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ A GLE R + ++YR RL+ E++VI +M F GYFLIV Sbjct: 306 ----ESVFSKDAREGLEKRFTEIRRLTELTPEQEEEYRARLEHEIDVIIKMGFPGYFLIV 361 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI WAK + IPVGPGRGSGAGS+ A+A+ ITDIDP+ + L+FERFLN +R SMPDFD+ Sbjct: 362 ADFINWAKDHEIPVGPGRGSGAGSLVAWAMRITDIDPMPYGLIFERFLNIERKSMPDFDV 421 Query: 421 DFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 DFCQ+RR EVI YVQ KYG E VAQI+T+GS++A+A +RDVGRAL MPY +VDR+ KLI Sbjct: 422 DFCQERRGEVIEYVQQKYGGAEHVAQIVTYGSMKARAVVRDVGRALGMPYGEVDRIAKLI 481 Query: 480 PNDPAHPVSLQAIADDSRFREARLAD-----PSVDRLLEISQKLEGLYRHASTHAAGIVI 534 P + L D + +E RL D P V LL ++ LEGL RH STHAAG+VI Sbjct: 482 PEE------LGITLDKAIDKEPRLGDLMKREPPVAELLNAARVLEGLQRHTSTHAAGVVI 535 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593 +P+ + +P+ + + ++ +TQ++MK E GLIKFDFLGLKTLT++ ++ + G Sbjct: 536 SPKPMVEYLPLCKGPKGEV-LTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKGDLG 594 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 ++D+ I DD +TY LL LG+FQLESSGMR L M+P+ D+IALV+LYRPG Sbjct: 595 REIDIGAIATDDPKTYDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPG 654 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 P+++ +V + N K+G+ +V+ +PL ++P+L+ET GVI+YQEQVM+IA +L+GYSL + Sbjct: 655 PLESGMVDDFVNTKHGR--MVAKYPLPQLEPILQETYGVIVYQEQVMKIANVLAGYSLGD 712 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD LRRAMGKKI MD +K++F++G +KN I A IF+L+AKFA YGFNKSH+AAY Sbjct: 713 ADNLRRAMGKKIAAVMDAEKDKFMAGCAKNNIDPKKAEYIFDLMAKFAGYGFNKSHSAAY 772 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++YQTAW+K HYP +F+AA ++ +M N +K+ ++ + ++ I+++PP +N DF Sbjct: 773 ALVAYQTAWLKAHYPAQFMAALLSCDMGNTDKVVRYINECKEHEIEVLPPDINESFRDFT 832 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V D+RI + LAA+K VG I+E AD P+ SL DFC RVD +K+NRRV+ESL+ A Sbjct: 833 VIDDRIRFGLAAVKNVGGAALESIIEIREADGPYKSLVDFCQRVDGRKVNRRVIESLIRA 892 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---EKGTFSDKITLEKFSV 945 GA D G R QL LD AQ ++++ + ++FA ++ + +I L + Sbjct: 893 GAFDSLGAKRSQLEAILDRALDQAQAAQRDKLSGQISLFAAMPTDQAERATEIELPEMPE 952 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E+ +GFY +GHPLD ++ L + R+ ++ + Sbjct: 953 WEEKQKLLFEKETVGFYLTGHPLDKHRRELAALTDTDLHGLAEWPDNQPARIGGLIRQFK 1012 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +++KG + +VT + E FP Sbjct: 1013 NHRSKKGDAMAFVTLEDTVDSVEVVVFP 1040 >gi|148264552|ref|YP_001231258.1| DNA polymerase III, alpha subunit [Geobacter uraniireducens Rf4] gi|146398052|gb|ABQ26685.1| DNA polymerase III, alpha subunit [Geobacter uraniireducens Rf4] Length = 1157 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1030 (41%), Positives = 630/1030 (61%), Gaps = 29/1030 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSLL+GA+ L +++ K + PA+AITD ++F A+EF K GI+P Sbjct: 5 NFVHLHLHTQYSLLDGAIRLGDLVKKAKGYEMPAVAITDHGSMFGAIEFYTKCKDKGIKP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128 IIG ++ I + + ++LL +GY+ L LVS Y +G Sbjct: 65 IIGSEVYIAPGSRFSKESGNGHESTSSYHLILLCENLQGYKNLSWLVSAGY--KEGFYYK 122 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L + +EGLI L+ G + N + A + ++F DR Y+ LQ Sbjct: 123 PRIDKEILAQ-HSEGLIALSACLKGEVAYQCGRNRVEDAIATARWYSEIFPDRYYIELQE 181 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ +++ LA LPLVATN+ +L+ ED +AH+VL+ + ++ +R Sbjct: 182 NTLPEQDLVNKRLLDLAAELSLPLVATNDCHYLNREDAKAHEVLLCIQTGKTMNDPNRMH 241 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDI 303 + + Y K+ EM + F PEA+ NTV IA RC+ L P++I +K DD+ Sbjct: 242 FSAEEFYFKSPQEMAAAFHYAPEAIANTVRIAERCNLELDFKTYHFPQYIKPADKTLDDV 301 Query: 304 QKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 +E+ E GL+ RL A+ Q Y +RL EL+ I +M F GYFLI Sbjct: 302 LEEQSYE-------GLKERLVTVRAKYPDITPEQEQGYYERLRIELDCIKQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK + IPVGPGRGS AGS+ AY++ ITDIDP+ ++LLFERFLNP+R+SMPD D Sbjct: 355 VADFINWAKDHGIPVGPGRGSAAGSLVAYSIRITDIDPIPYNLLFERFLNPERISMPDID 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFCQDRR+EVI+YV KYG ++V QIITFG++ A+ LRDVGRAL M Y VD++ KL+ Sbjct: 415 VDFCQDRREEVIQYVTEKYGRDKVCQIITFGTMAARGVLRDVGRALDMAYGDVDKIAKLV 474 Query: 480 PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P ++L +A+ + + E AD V LL+++ LEGL RHASTHAAG+V+ Sbjct: 475 PE--VLGITLDKALQQEPKLNELAAADRRVKELLDVALCLEGLARHASTHAAGVVVAPDV 532 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597 L + P+Y+D ++ TQ++MK++EK GL+KFDFLGLK LT++ ++ + A + D Sbjct: 533 LEEFCPVYKDQKNGSITTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKIIRAGKDPAFD 592 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++L+ DD E+Y LL + T G+FQLESSGM+ L ++P C EDIIA+ +LYRPGP+ + Sbjct: 593 ITLLRDDDEESYRLLQSGNTTGVFQLESSGMQGLLVKLKPSCFEDIIAVCALYRPGPLGS 652 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + +RK+GK+K+V P ++P+LK+T GVI+YQEQVMQI++ L+GYSL +AD+LRR Sbjct: 653 GMVDDFIDRKHGKKKVVYDLPQLEPILKDTYGVIVYQEQVMQISRTLAGYSLGQADLLRR 712 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK E M K+K F++GA + GI A +IF+L+AKFA+YGFNKSH+AAYA+++YQ Sbjct: 713 AMGKKDPEVMAKEKIPFLAGAKEQGIDPKKAESIFDLMAKFAEYGFNKSHSAAYALVAYQ 772 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPVEF+AA +T +M N +K+ K D R I+++PP +N F+V I Sbjct: 773 TAYLKAHYPVEFMAALLTEDMGNTDKVIKNISDCRDMGIEVLPPDINASDHSFRVLGKSI 832 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L A+K VG + I+E+ F + DFC RVD +++N+RV+ESLV GA D G Sbjct: 833 RFGLGAVKNVGESAIEAIIESRKSGSFADIYDFCERVDLRRVNKRVVESLVKCGAFDSTG 892 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVRF 952 R L+ +L++ Q +++ R + ++F +G + K +L + + Sbjct: 893 ARRAPLMAALEDAMVLGQKIQQERDSAQVSLFGVAEIVRGNGNGKGSLPDVPEWDDKLLL 952 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LGFY +GHPLD Y +++ + ++L +VV+K++ T+KG Sbjct: 953 NQEKEALGFYITGHPLDRYSSQIKRFATVHTSDFGEISDRAEVKLCGIVVTKKEFITKKG 1012 Query: 1013 SRIGWVTFSE 1022 R+ +VT + Sbjct: 1013 ERMAFVTLED 1022 >gi|300902003|ref|ZP_07120030.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1] gi|301305320|ref|ZP_07211416.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1] gi|300405889|gb|EFJ89427.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1] gi|300839425|gb|EFK67185.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1] gi|315254986|gb|EFU34954.1| DNA polymerase III subunit alpha [Escherichia coli MS 85-1] Length = 1144 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1040 (41%), Positives = 624/1040 (60%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFVDIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG I A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|120553848|ref|YP_958199.1| DNA polymerase III subunit alpha [Marinobacter aquaeolei VT8] gi|120323697|gb|ABM18012.1| DNA polymerase III, alpha subunit [Marinobacter aquaeolei VT8] Length = 1162 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1052 (40%), Positives = 638/1052 (60%), Gaps = 53/1052 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL+VHS YS+++G + + ++ ++A PA+ +T+ +N+ S + F + A AG++P Sbjct: 6 TFVHLRVHSEYSMVDGLVRVKPLIGRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAGVKP 65 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + L+ ++ + PF + LL +GY L E++S Y Q Sbjct: 66 IIGADI------WLENPDEPENPF----RLTLLARDNDGYLNLTEVISLGYTEGQRYGKP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 + SWL E +GLI+L+G G + +A ++A +R ++ L+ D Y+ LQR Sbjct: 116 IVQKSWL-ESRAKGLIVLSGAKMGDVGKALLAGKPELARERADYWRNLYPDSYYLELQRT 174 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R D V+LA LP+VATN+ FL +D+EAH+ + + S + R R Sbjct: 175 GRAGDEDCLHMSVELAAELGLPVVATNDVHFLEADDFEAHEARVCIGESRTLDDPRRDRR 234 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YL++ EM+ +FSD+PEA+ENTVEIARRCS +++ LP + D + +E Sbjct: 235 FSDQQYLRSAEEMIELFSDIPEAVENTVEIARRCSVKVRMGEYFLPNY--PIPDGMTMDE 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG-----YHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 R+ + GLE RLA+ ++K ++Y +RL FEL++I +M F GYFLIV D Sbjct: 293 Y--FRHVSEEGLEARLAK-TLSKDDPEYDQKREEYYKRLKFELDIIIQMGFPGYFLIVMD 349 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 350 FIKWAKNNGVPVGPGRGSGAGSLVAYALLITDLDPLEYDLLFERFLNPERVSMPDFDVDF 409 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI Y KYG E V+QIITFG++ AKA +RDV R Y D+L KLIP + Sbjct: 410 CMEGRDRVIDYTAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFE 469 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 ++ +AI + + +E D + E++ KLEG+ R+A HA G+VI ++ Sbjct: 470 VGMTLN-KAIEQEPQLKEFLEQDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDF 528 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGV-KVD 597 P+Y D VTQF+ +E AGL+KFDFLGL+TLT+++ +L+ + QRG ++D Sbjct: 529 SPLYCDDEGGSLVTQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRRQQRGEGELD 588 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +S IP DD ++ +L T +FQLES GM+ + +QPD +ED+IALV+L+RPGP+ + Sbjct: 589 ISAIPLDDKPSFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQS 648 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + +RK+G++ + HP + P+L+ T GVI+YQEQVMQIAQ+++GY+L A Sbjct: 649 GMVDDFIDRKHGRQPLSYPHPDYQYQGLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGGA 708 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQK F+ G NGI KT+A NIF+L+ KFA YGFNKSH+AAYA Sbjct: 709 DMLRRAMGKKKPEEMAKQKAIFLDGCENNGIDKTLAENIFDLVEKFAGYGFNKSHSAAYA 768 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+AA +T +M N +K+ ++ R + ++ P V+ F V Sbjct: 769 LVSYQTLWLKAHYPAEFMAAVLTADMQNTDKVVTLVEECRNMKLDLLVPDVSRSAYTFTV 828 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D +I Y L AIKG+G I+EA+ PF + DFC RVD KK+N+R +E+L+ +G Sbjct: 829 NDQGQIVYGLGAIKGLGEGPIESIVEAAKAGPFQDIFDFCRRVDLKKVNKRAMEALIRSG 888 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-------EKGTFSDKITLEK 942 A+D G R +L+ S+D + A +N ++F ++ T++D + + Sbjct: 889 AMDKLGADRAKLMASIDKAIQQADQQSRNDAAGMVDMFGEMLEGGGDDEDTYADVAHVRE 948 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAM 1000 + + R + E+ LG Y +GHP D Y+ +R+ S+A ++ N R+A + Sbjct: 949 WPEKE---RLKGEKDTLGLYLTGHPFDEYEREVRRF----VRCSIADLKPNKSPQRVAGL 1001 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 VV+++ KT+ GS + ++T + + EA F Sbjct: 1002 VVAQRTMKTKTGSTMCFITLDDRSARIEATLF 1033 >gi|114562463|ref|YP_749976.1| DNA polymerase III subunit alpha [Shewanella frigidimarina NCIMB 400] gi|114333756|gb|ABI71138.1| DNA polymerase III, alpha subunit [Shewanella frigidimarina NCIMB 400] Length = 1158 Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1045 (40%), Positives = 610/1045 (58%), Gaps = 40/1045 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+ +G + I+ AIA+TD NN ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMSDGVAKVKPIIAAAENQGMAAIALTDQNNFCGLVKFYGACNGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 PIIG + +TP ++ ++ EGYQ L +L+S YL Sbjct: 64 PIIGADFWV------------QTPGFEKEFCALTIIAMNNEGYQNLTQLISEAYLRGHVD 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 V I WL + + GLI+++G G + +A + E + +++ F DR Y+ L Sbjct: 112 NRVVIDQDWLVKYNS-GLIIISGAKDGDVGKALLKGNQNQVESLIAFYQQHFEDRYYLEL 170 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R R ++ V+LA LP+VATN +FL ++D+EAH++ +A+ + R Sbjct: 171 IRTGRAHEERYLHMAVELASIKGLPVVATNQVVFLKQDDFEAHEIRVAIHDGFTLVDPRR 230 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ D YL+ EM+++F+D+P A++N+VEIA+RC+ ++++ LP F + Sbjct: 231 PKTYSDQQYLRTEDEMIALFADIPSAIQNSVEIAKRCNVTIRLNEYFLPNFPTGDL---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L N +V GLE RL + +Y +RL+ EL VI +M F GYFLIV Sbjct: 287 -SIEDFLVNVSVKGLEERLEFLFPNPQVRAEKRGEYDERLEIELKVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY V+RL KLIP Sbjct: 406 FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVERLTKLIPA 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 +P ++ +A + EA D V L+++ ++LEG+ R+A HA G+VI ++ Sbjct: 466 EPGMTLA-KAFEVEPALPEAYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTRITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R +K V Sbjct: 525 FAPLYCDAEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPRLIKEGKDPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP D + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 SIEAIPLADPACFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIERKHGREEVSYPDAEYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN F Sbjct: 765 ALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFT 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V D+ I Y + AIKGVG I+EA + PF L DFC+R+D KKLN+RV+E L+ A Sbjct: 825 VDDDLNIVYGIGAIKGVGEGPVDSILEARKNGPFTDLFDFCARIDLKKLNKRVIEKLILA 884 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947 GALD G R ++ +L A K ++F D K + Sbjct: 885 GALDTLGPHRASMMATLPQAISAAAQHAKAEATGQNDMFGLLNSEPEDSKQNFVHCTPWP 944 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 + E E+ LG Y +GHP++ Y L++ ++ T RG ++ A +VV+ + Sbjct: 945 DKIWLEGERETLGLYLTGHPINQYLKELKQYTNGRLKDIHPTERGKTVKAAGLVVATRVM 1004 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G VT + + E F Sbjct: 1005 ITKRGSKMGLVTLDDKSARLEVMLF 1029 >gi|323170976|gb|EFZ56625.1| DNA polymerase III subunit alpha [Escherichia coli LT-68] Length = 1140 Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1030 (41%), Positives = 621/1030 (60%), Gaps = 54/1030 (5%) Query: 32 ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91 ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q +L Sbjct: 7 LVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQCDLLGDE---- 60 Query: 92 PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151 + + +L + GYQ L L+S+ Y G I WL E+ EGLI+L+GG Sbjct: 61 ----LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-NEGLILLSGGR 115 Query: 152 SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELP 210 G + R+ +S + ++ + +++ F DR ++ L R R + V+LA LP Sbjct: 116 MGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLP 175 Query: 211 LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPE 269 +VATN+ F+ D++AH++ +A+ + RPR +P Y+++ EM +F+D+PE Sbjct: 176 VVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPE 235 Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QG 326 AL NTVEIA+RC+ +++ LP+F + E+ L +A GLE RLA Sbjct: 236 ALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAFLFPD 290 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ Sbjct: 291 EEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLV 350 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QI Sbjct: 351 AYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQI 410 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506 ITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + + E AD Sbjct: 411 ITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADE 469 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVTQF+ +E A Sbjct: 470 EVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYA 529 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIF 621 GL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ +L T +F Sbjct: 530 GLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVF 589 Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI----- 674 QLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E+I Sbjct: 590 QLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQ 649 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EEM KQ+ F Sbjct: 650 HESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAE 709 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT Sbjct: 710 GAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTA 769 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHI 853 +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIKGVG I Sbjct: 770 DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 829 Query: 854 MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912 +EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ SL + K A Sbjct: 830 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 889 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYF 963 K ++F G ++ E +E S V + E+ LG Y Sbjct: 890 DQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYL 941 Query: 964 SGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 +GHP++ Y K I R +G ++ T RG I A +VV+ + T++G+RIG T + Sbjct: 942 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1001 Query: 1023 PAKEYEANFF 1032 + E F Sbjct: 1002 RSGRLEVMLF 1011 >gi|300993595|ref|ZP_07180451.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1] gi|300406518|gb|EFJ90056.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1] gi|315294588|gb|EFU53935.1| DNA polymerase III subunit alpha [Escherichia coli MS 153-1] Length = 1144 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1040 (41%), Positives = 624/1040 (60%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|328953644|ref|YP_004370978.1| DNA polymerase III, alpha subunit [Desulfobacca acetoxidans DSM 11109] gi|328453968|gb|AEB09797.1| DNA polymerase III, alpha subunit [Desulfobacca acetoxidans DSM 11109] Length = 1150 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1039 (40%), Positives = 631/1039 (60%), Gaps = 30/1039 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL VH++YSLL+GA+ LN+++D + + PA+AITD N+F +EF KA AG+ Sbjct: 3 TPGFVHLHVHTAYSLLDGAIRLNDLIDTALSMEMPAVAITDHGNMFGVVEFYTKAEKAGL 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC+L + L+ + + + +VLL GYQ L++LVS+ L + Sbjct: 63 KPIIGCELYVAPGSRLEKSGKKGDNY----HLVLLAENLTGYQNLLKLVSKANL-EGFYY 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ L + EGLI L+ G + + + AE + ++F R Y+ +Q Sbjct: 118 KPRVDRELLAD-HAEGLIALSACLHGVVAAHVVADDLKTAEIAAREYGEIFPGRFYLEVQ 176 Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + ++ + + ++++A LP+VATN+ +L ED AHDVL+ + ++ R Sbjct: 177 ANDLTEQQKVNAALLEMAPRLGLPVVATNDCHYLRPEDARAHDVLLCIQTGKTINTTKRM 236 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDD 302 R + D + K+ +M + F D P+ LE ++EIA RC L + H P+ P + Sbjct: 237 RFSTDQLFFKSPVQMAAAFPDRPDLLEASLEIANRCQLELPLGEFHFPVFPL-------E 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359 + E +L+ +A GLE RL Q ++ + Q YR R++ EL ++ +M F+GYFL+ Sbjct: 290 NGQTMEAQLQQEARRGLEHRLHQWQLSGAWPMEKIQHYRARMEEELALLCQMGFAGYFLV 349 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI++A+K +IPVGPGRGS AGS+ A AL ITD+DP+ + L FERFLNP+R SMPD D Sbjct: 350 VADFIRYARKRHIPVGPGRGSAAGSLVACALEITDLDPIAYGLFFERFLNPERKSMPDID 409 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC +RR E+I YV KYG E V QIITFGS++ + +RDVGRAL +PY + D++ KL+ Sbjct: 410 VDFCFERRGEIIDYVARKYGKEHVGQIITFGSMKTRQVIRDVGRALDLPYPEADKIAKLV 469 Query: 480 PNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P+ ++L+ A+ + R REAR AD ++ +L I+ LEGL RHASTHAAG+VI D+P Sbjct: 470 PD--VLKINLRTALEKEPRLREARDADENIREVLTIAAALEGLPRHASTHAAGVVIADKP 527 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597 L +P+Y+ + ++ +TQF MK +EK GLIKFDFLGL+TLT+L+ + + Q+ D Sbjct: 528 LWCYLPLYKGNKDEI-ITQFEMKGVEKVGLIKFDFLGLRTLTVLETAAQIVRRQKDKNFD 586 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P +D T+ LL + T G+FQLESSGMR+ L ++P C ED+IALV+LYRPGP+++ Sbjct: 587 YRQLPLEDAATFELLRSGNTAGVFQLESSGMREKLVQLRPTCFEDLIALVALYRPGPLES 646 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + RK+G+ + P ++P+LKET G+I+YQEQVMQIA ++SGYS+ EAD+LRR Sbjct: 647 GMVDDFIKRKHGELNVTYELPELEPILKETYGIILYQEQVMQIAGIISGYSMGEADILRR 706 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK M QKERF SGA G A +F L+ KFA YGFNKSH+AAYA I+YQ Sbjct: 707 AMGKKEPAVMAAQKERFCSGAVSRGFPLAKAEKLFHLIEKFAGYGFNKSHSAAYAYITYQ 766 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYP+EFLAA T E+++ + K Q+AR+ I ++PPS+N DF V ++I Sbjct: 767 TAYLKAHYPLEFLAALFTSEINSPTTLTKHIQEAREDGIVLLPPSLNASERDFTVEGSQI 826 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + LA +K VG + I+EA PF SL +F R + K+N++VLESL+ AGALD G Sbjct: 827 RFGLAGVKNVGDNAIKAILEARKKGPFISLGNFLERANQTKVNKKVLESLIQAGALDFLG 886 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFE 953 +R +L ++ + AQ K + + ++F E L + + Sbjct: 887 INRARLFGGVEAALERAQVALKLQAARQMDMFGGLGEADLGEGDDWLPPVPEWDEQEKLA 946 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LG Y SGHPL Y+ L+ + ++ + L ++V+ ++ T+KG Sbjct: 947 REKEALGIYLSGHPLAKYRQQLQALTDLTIDDLAEKPENGPVLLGGLIVAVKETMTKKGE 1006 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 R+ + T + E F Sbjct: 1007 RMAFATLEDQVGSVEVVVF 1025 >gi|220934350|ref|YP_002513249.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219995660|gb|ACL72262.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 1162 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1054 (40%), Positives = 636/1054 (60%), Gaps = 48/1054 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL +H+ +SL++G + + ++ + PA+A+TD NLF ++F + A AGI Sbjct: 2 TTSFVHLHLHTEFSLVDGLVRVEPLVQAVREAGMPAVAVTDQGNLFGMVKFYKAALKAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+G + G+ P +VLL +GY+ L L+SR Y +G+Q Sbjct: 62 KPIVGVDTWV------SAPQAGEAP----SRLVLLAQDEDGYRNLTRLISRSY--QEGQQ 109 Query: 128 SVRICL---SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 S + W + + GLI L+GG G I RA + AE+ ++ LF R Y+ Sbjct: 110 SGDAPVLDRGWF-DGASRGLIALSGGREGEIGRALMGSQPSAAEELCEFWEGLFPGRFYL 168 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + R R + V LA + LP+VATN+ FL+ D++AH+ + + V+ Sbjct: 169 EIGRTGREGEEDHLHAAVDLAQSRSLPVVATNDVRFLAASDFDAHEARVCIHDGRVLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR TP YL+ EM ++F+D+PEALEN+VEIARRC+ L + +LP + Sbjct: 229 RRPRDYTPQQYLRTAEEMAALFADIPEALENSVEIARRCNVSLTLGKSVLPEYPVPAG-- 286 Query: 303 IQKEEENELRNKAVAGLEVRLAQ--GAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFL 358 ++ R + GL+ RLA + A++ YR+RL+ EL+VI +M F GYFL Sbjct: 287 --MTTDDYFRKASREGLDARLAVILEGVTDNREAKERAYRERLEIELDVICQMGFPGYFL 344 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFIQWAK N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF Sbjct: 345 IVADFIQWAKDNAIPVGPGRGSGAGSLVAYALKITDLDPLLYDLLFERFLNPERVSMPDF 404 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC ++RD VI YV +YG E+V+QIIT G++ AKA +RDVGR L PY VDR+ KL Sbjct: 405 DIDFCMEQRDRVIDYVAQRYGREKVSQIITHGTMAAKAVVRDVGRVLGHPYGFVDRIAKL 464 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + + +A+ + R D V L+++++KLEG+ R+A HA G+VI Sbjct: 465 IPFEIGMTLD-KALEQEEELRRLYEEDEEVSGLIDLARKLEGVARNAGKHAGGVVIAPTE 523 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRG 593 L+ P+Y + VT F+ +E GL+KFDFLGL+TLT++ ++ + A+ Sbjct: 524 LTDFSPLYCEPGGQSVVTHFDKDDVEAVGLVKFDFLGLRTLTIIDWAVRTIDQQRKAEGQ 583 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +D++ IP DD ET+ LL + T +FQLES GM++ ++ +QPD EDI+ALV+LYRPG Sbjct: 584 APLDVNRIPLDDPETFGLLKRQETTAVFQLESRGMKELIKRLQPDVFEDIVALVALYRPG 643 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+ + +V + NRK+G+ K+ HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L AD Sbjct: 644 PLQSGMVDDFINRKHGRAKVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLAGYTLGGAD 703 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+E F++GA+ G+ + A IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 704 MLRRAMGKKKPEEMAKQREIFLAGATGRGVQEATASYIFDLMEKFAGYGFNKSHSAAYAL 763 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQTAW+K HYP F++A ++ +MD+ +K+ ++ R + ++PP +N F V Sbjct: 764 LSYQTAWLKQHYPAAFMSAVLSADMDHTDKVVNLIEECRAMELHVVPPDINRSQHRFGVA 823 Query: 832 DNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D R + Y L AIKGVG + + +++A A PF SL+D C R DS+K+NRR LE+L+ AG Sbjct: 824 DARTVIYGLGAIKGVGESAIQALIQAREAGGPFQSLDDLCVRADSQKINRRTLEALIRAG 883 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 ALD G +R L+ +L A+ +N + E++F + + E+ + Sbjct: 884 ALDSIGPNRATLMANLPKALSRAEQHLRNESLGQEDLFGGPVTPGASDVDDEQLPEWDED 943 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----------RGNNIRLA 998 +R E+ LG Y +GHP+D ++ L+ + K + VA + + + Sbjct: 944 LRLSAEKETLGLYLTGHPIDRFQAELKAIHSKRIADLVAEVGDQTPGEGRRRKEQQATVG 1003 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + K T+ G RIG+VT + + E F Sbjct: 1004 GLVINIRTKPTQTG-RIGFVTLDDRSGRIEVGLF 1036 >gi|323157979|gb|EFZ44081.1| DNA polymerase III subunit alpha [Escherichia coli EPECa14] Length = 1144 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1040 (41%), Positives = 624/1040 (60%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ + + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG I A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|322420562|ref|YP_004199785.1| DNA polymerase III subunit alpha [Geobacter sp. M18] gi|320126949|gb|ADW14509.1| DNA polymerase III, alpha subunit [Geobacter sp. M18] Length = 1156 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1038 (39%), Positives = 631/1038 (60%), Gaps = 26/1038 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +HS YSLL+GA+ + ++L K+ PA+AITD N+F LEF KA GI+P Sbjct: 5 NFVHLHLHSQYSLLDGAIRIGDLLKKVKDCHMPAVAITDHGNMFGTLEFFLKAKEKGIKP 64 Query: 70 IIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G ++ I LK P T ++LL G++ L LVS Y D + Sbjct: 65 ILGSEVYIAPHSRTLKQAPTAADPV-TSYHLILLCENMTGFKNLSYLVSAGYK-DGFYRR 122 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYVNL 186 RI L + EGLI+L+ G + A+ +++ E R + + F Y+ L Sbjct: 123 PRIDKELLLK-HKEGLIVLSACLQGEV--AYLAGRNKMDEARDAASWYAENFPGSYYIEL 179 Query: 187 QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q ++ ++ +++++A LPLVATN+ +L++ED AH++L+ + +S R Sbjct: 180 QENKLPEQDIANKRLLEIAREMNLPLVATNDCHYLNQEDARAHEILLCIQTGKTMSDPTR 239 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + D Y+K EM F P+ALENTV+IA RC+ P + + + Sbjct: 240 MAFSVDEFYVKTPEEMAKAFHYAPDALENTVKIAERCNLEFDFKTYYFPAYEAPPGETLD 299 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ E E A GL +RL + I + Y RL EL+ I +M F GYFLIVA Sbjct: 300 QQLERE----ATEGLVLRLEKIRIKYNLTEDQEKGYWDRLRIELDCIRQMGFPGYFLIVA 355 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D+D Sbjct: 356 DFINWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVD 415 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR+EVI+Y+ KYG E+V QIITFG++ A+ +RDVGRAL + + VD++ KL+P Sbjct: 416 FCQDRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGDVDKIAKLVPE 475 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 ++L+ A+ + + +E ADP V ++ ++ +LEGL RHASTHAAG+V+ R + Sbjct: 476 --VLGITLEKALEQEPKLKELMDADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQME 533 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599 + P+Y+D ++ TQ++MK++EK GL+KFDFLGLK LT++ + + A + D++ Sbjct: 534 EFCPVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRAGKDPNFDIT 593 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 L+ DD E+Y LL T G+FQLESSGM++ L ++P C EDIIA+ +LYRPGP+ + + Sbjct: 594 LLRDDDEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGM 653 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V + RK+G+++ V P ++P+LK+T GVI+YQEQVMQI++ L+GYSL AD+LRRAM Sbjct: 654 VDDFIERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAM 713 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK E+M K++++F+ G+ K G+ IF+L+AKFA+YGFNKSH+AAYA+++YQTA Sbjct: 714 GKKDAEQMAKERDKFLIGSEKLGLDSKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTA 773 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYPVEF+AA +T +M N +K+ K D R+ I+++PP +N F+V + + + Sbjct: 774 FLKAHYPVEFMAALLTEDMANTDKVVKSIGDCREMGIEVLPPDINESLRSFRVLEKAMRF 833 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L A+K VG I+EA D+PF + DFC RVD +++N+RV+E+L+ GA DC G Sbjct: 834 GLGAVKNVGEGAIEAIIEARGDEPFKDIFDFCERVDQRRVNKRVIEALIKCGAFDCTGAK 893 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---EKGTFSDKITLEKFSVENSSVRFEN 954 R QL+ +L++ Q V++ R + ++F ++G+ L + R Sbjct: 894 RAQLMAALEDAAVNGQRVQQERESAQASLFGAAEIQRGSNGSGNRLPDIPEWDEKYRLGC 953 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ +GF+ +GHPLD Y +R+ + + I++ + S ++ T+KG R Sbjct: 954 EKEAIGFFITGHPLDRYVADMRRFSSVDCTSILEAKEKSEIKICGVPTSLKEIMTKKGDR 1013 Query: 1015 IGWVTFSEPAKEYEANFF 1032 +G+V + E F Sbjct: 1014 MGFVALEDLVGSVEVVVF 1031 >gi|113460344|ref|YP_718405.1| DNA polymerase III subunit alpha [Haemophilus somnus 129PT] gi|112822387|gb|ABI24476.1| DNA polymerase III, alpha subunit [Haemophilus somnus 129PT] Length = 1158 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1046 (41%), Positives = 623/1046 (59%), Gaps = 42/1046 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S++ G + ++ + A+A+TD N + F +A ++G++ Sbjct: 4 PRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D+ ++ +L G F + LL EGY + L+S+ Y ++G + Sbjct: 64 PIIGA--DVLVKSDL----LGDELF----ELTLLAKNNEGYHNITLLLSKAY--ERGYYN 111 Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + I SWL E EG+I+L+GG +G + + N+S E + +++ F D Y++L Sbjct: 112 LPYIDQSWLAE-HHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSLS 170 Query: 188 R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R DRY +S ++ LA +LPLVATN+ FLS ED+EAH++ +A+ + R Sbjct: 171 RTGRSDEDRYIQSALI-LAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKR 229 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P++ + Y ++ EM +F+D+P ALENTV IA+RC+ +++ LP+F + Sbjct: 230 PKLYSSQQYFRSEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYFLPKFPTGDL---- 285 Query: 305 KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + ++Y RL EL+VI +M F GYFLIV Sbjct: 286 -SPEDFLIQKSKEGLEERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVM 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNPDR+SMPDFD+D Sbjct: 345 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPDRVSMPDFDVD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 405 FCMDKRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPA 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP ++ +A + R E D V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 DPGMTLT-KAFEVEPRLSEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITD 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R VK V Sbjct: 524 FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAV 583 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+S IP +D ++++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP++ Sbjct: 584 DISTIPLNDPDSFNLLKKAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLE 643 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G E + H + P+L+ T GVI+YQEQVMQIAQ+L+GYSL Sbjct: 644 SGMVQNFIDRKHGVEPVSYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGG 703 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM Q++ F GA GI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 704 ADLLRRAMGKKKPEEMAAQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAY 763 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT EMDN +KI F + + + I+PP +NT F Sbjct: 764 ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFS 823 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+ A F L D C+RVD KK+NRR E+L+ Sbjct: 824 VNDNGEIVYGIGAIKGVGEVPINAIVSAREQGGIFKDLFDLCARVDLKKVNRRTFENLIK 883 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D G R L Q+L++ K + K+ ++F + D T + Sbjct: 884 SGAFDKLGPHRAALAQNLEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRW 943 Query: 948 SSVR-FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 S + + E+ LG Y S HP+ Y L E RG + ++V+ + Sbjct: 944 SEKQILDGERETLGLYLSSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRF 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+KG+R+G T + + + F Sbjct: 1004 AVTKKGNRLGIATLDDRSGLLDITLF 1029 >gi|296106547|ref|YP_003618247.1| DNA polymerase III subunit alpha [Legionella pneumophila 2300/99 Alcoy] gi|295648448|gb|ADG24295.1| DNA polymerase III subunit alpha [Legionella pneumophila 2300/99 Alcoy] Length = 1148 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1047 (41%), Positives = 642/1047 (61%), Gaps = 53/1047 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VH+ +SL++G + + ++ + A +A+TD NLF+A++ + A AGI+PI Sbjct: 5 FVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKPI 64 Query: 71 IGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG L D++ DN + S+VLL GY+ L LVS+ Y Q Sbjct: 65 IGSDLPCHDLETPDN-------------IFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ L W+ E ++GLI L+GG G I +A N +A KR L + LF +R Y+ +Q Sbjct: 112 QPRVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQ 170 Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 R R + + ++V LA +LPLVATN+ F++E+D++AH+ + + ++ R Sbjct: 171 RTGRADELHYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRV 230 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + YL++ EM +FSDLP AL+NTVEI++RC+ L + LP F + + Sbjct: 231 QQYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLDLGHNYLPNFPIPDGTTV-- 288 Query: 306 EEENELRNKAVAGLEVRLAQ-------GAI--AKGYHAQDYRQRLDFELNVIARMKFSGY 356 E L + + GLE RL Q G + A+G +Y +RL EL+VI M F+GY Sbjct: 289 --EAYLSHLSEVGLEERLKQLFRDKSEGELLAARG----EYDKRLKIELDVINNMGFAGY 342 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP Sbjct: 343 FLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMP 402 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L Sbjct: 403 DFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLA 462 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP + +S +A+ + R + V L +++ KLEG+ R+A HA G+VI Sbjct: 463 KLIPFELGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAP 521 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592 L+ +Y + S V+QF+ +E GL+KFDFLGL+TLT++ +L + ++ Sbjct: 522 SQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENA 581 Query: 593 GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G+ +D+S IP D T+ LL T +FQLES GM++ + +QPDC EDIIALV+L+R Sbjct: 582 GLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFR 641 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+ + +V + +RK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L Sbjct: 642 PGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGA 701 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+E F GA G+ + +A +IF+L+ KFA YGFNKSH+AAY Sbjct: 702 ADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAY 761 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++YQTAW+K HYP F+AA M+ +MDN +K+ F + +Q++PPS+N F Sbjct: 762 ALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFT 821 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D + I Y L AIKGVG + I+ E + + PF L FC R+D +K+NRRV+E+L+ Sbjct: 822 VSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIK 881 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D + R L SL+ K A+ +N+++ ++F+ + ++ +E S Sbjct: 882 SGAFDVWKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQNYVESKSWSE 941 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQ 1005 + R E E+ VLGFY +GHP D Y+ R++G I + ++ I + A VV+ + Sbjct: 942 AQ-RLEGEREVLGFYLTGHPADQYR---RELGDFIVPVSQLNPSLHKKAI-ICAQVVAIR 996 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G ++ + + +A F Sbjct: 997 KIITKRGKKLVIIGMDDATARIDAVVF 1023 >gi|326621935|gb|EGE28280.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 1144 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1040 (41%), Positives = 621/1040 (59%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K A+ PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVH--- 57 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 N + ++ + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 58 NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R + + E+ + ++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ FL +D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALENTVEIA+RC+ +++ LP+F + E+ L KA GL Sbjct: 230 MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I++A + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG A +V++ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|323700171|ref|ZP_08112083.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. ND132] gi|323460103|gb|EGB15968.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans ND132] Length = 1184 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1056 (40%), Positives = 629/1056 (59%), Gaps = 48/1056 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA+ +N++L + PA+AITD ++F A+ F A GI+PI Sbjct: 4 FVHLHVHTEYSLLDGAIRINDLLTRAKDLGMPAVAITDHGSMFGAVVFYMAAKELGIKPI 63 Query: 71 IGCQL-----DIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 IGC++ D+D ++ +L+ + G ++LL GY+ LI+LVS YL D Sbjct: 64 IGCEVYVAEGDVDDEEAHLRKEHGGGY------HLILLAKNQRGYKNLIKLVSTGYL-DG 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 R+ L++ +EGLI L+ +G I R + T++ +F Y+ Sbjct: 117 FYYKPRVSKHLLKKY-SEGLIALSACLAGEIPRKLMNEGLEAGADMARTYESIFPGNFYL 175 Query: 185 NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ + + R +++ V+ A LPLVATN+ +L+ ED+EAHD L+ + T V + Sbjct: 176 ELQDNGIGKQTRLNELLVKCAEKTGLPLVATNDCHYLTAEDFEAHDTLLCIQTQTTVDAE 235 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R+ T + Y K EM F+ +PEA+ NT IA +C+ +++ P + E Sbjct: 236 KRFRMETKELYFKTPEEMEKAFAHVPEAILNTQRIAEQCNLEIELGNYYFPEYKLPEGVS 295 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + +E E R GL+ RL I Y +RLD+EL VI +M F YFLIV D Sbjct: 296 MNEEFERLCRE----GLQRRL--NTITYEVDEGKYWKRLDYELGVIKQMGFPAYFLIVQD 349 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK + IPVGPGRGS AGS+ A++L IT++DPL + LLFERFLN +R+SMPD D+DF Sbjct: 350 FINWAKDHRIPVGPGRGSAAGSIVAWSLKITNLDPLPYDLLFERFLNVERVSMPDIDVDF 409 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C+ RR EV++Y KYG +RVAQI TFG+++ KA ++DVGRAL M + + DR+ KLIP+D Sbjct: 410 CERRRLEVVKYCAEKYGVDRVAQITTFGTMKTKAVIKDVGRALGMSFGETDRIAKLIPDD 469 Query: 483 PAHPVSL-----------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 PA L A+ + + DP V +L++IS +LEGL RHASTHAAG Sbjct: 470 PAVMAKLLGVEKAKITVPNAVKAVTELDDMVATDPKVAKLIDISTRLEGLCRHASTHAAG 529 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI ++P+++ +P+Y+ + ++ VTQF+MK +EK GLIKFDFLGL+T+T+++ LD + + Sbjct: 530 VVISNKPMTEYLPLYKGKKGEI-VTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIRE 588 Query: 592 RGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 +G K DL + DD ET+ + T GIFQ+ESSGMR+ L + PDC EDI+A+++LY Sbjct: 589 QGKKAPDLETLHLDDPETFAIFAKGDTDGIFQVESSGMRKYLRMLGPDCFEDIVAMLALY 648 Query: 651 RPGPIDNIVVYN--------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 RPGP+ I + RK+G+ + HP ++ LK T GV++YQEQVM A ++ Sbjct: 649 RPGPLGMIGSHGVSMVDEFIMRKHGEIAVTYPHPSLEETLKPTYGVMVYQEQVMATAMVI 708 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 + YSL E D+LRRAMGKKI EEM KQ+ RF+ G+ +NGI +A +IF+ + KFA YGFN Sbjct: 709 ANYSLGEGDLLRRAMGKKIAEEMAKQRSRFLEGSRENGIDDAVANDIFDTMEKFAAYGFN 768 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSH+AAYA+ISY TA++K H+PVEF+AA M+ EM+N +KI + R +I + P +N Sbjct: 769 KSHSAAYALISYHTAYLKAHFPVEFMAALMSTEMNNTDKIIMYVNACRDMDITVRQPDIN 828 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRV 881 F V + I +++AAIK VG I+ A++ PF ++ DFC RV+ +++ +RV Sbjct: 829 AGQARFSVKNGEILFAMAAIKNVGEEAINEIVAERAEQGPFLNIFDFCERVNLRRVTKRV 888 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNI----QKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 LESL+ AGALDCF SR LL+ LD QK A+ E N + + K + + Sbjct: 889 LESLIKAGALDCFSCSRAALLEDLDKAVALGQKKAKEKESGMLNMLDLLGGGGKSDATAQ 948 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 T + + E+ VLGF+ SGHPL Y+ ++++ E+ G +R+ Sbjct: 949 PTCSLCEEFEDREKLQLEKEVLGFFLSGHPLLAYRHDMQRLRTVTLEDCKTIPNGTEVRV 1008 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A ++ +Q TRKG + + + E P Sbjct: 1009 AVIIPDFKQHITRKGDPMAFCNAEDLTTYGEITMLP 1044 >gi|301049902|ref|ZP_07196828.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1] gi|300298355|gb|EFJ54740.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1] Length = 1144 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1040 (41%), Positives = 623/1040 (59%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R G ++ T RG A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|312966321|ref|ZP_07780547.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75] gi|312289564|gb|EFR17458.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75] gi|323190416|gb|EFZ75691.1| DNA polymerase III subunit alpha [Escherichia coli RN587/1] Length = 1144 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1040 (41%), Positives = 623/1040 (59%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLVFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG A +VV+ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|238796624|ref|ZP_04640131.1| DNA polymerase III subunit alpha [Yersinia mollaretii ATCC 43969] gi|238719602|gb|EEQ11411.1| DNA polymerase III subunit alpha [Yersinia mollaretii ATCC 43969] Length = 1171 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1056 (41%), Positives = 623/1056 (58%), Gaps = 49/1056 (4%) Query: 4 YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 YL+ + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 9 YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AG++PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 69 HGAGVKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181 G I WL + EGLI+L+GG G + R F +Q + L F ++ F D Sbjct: 119 GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGR-FILRGNQAQVDQCLEFYQEHFPDS 176 Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R R + V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 177 YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F E Sbjct: 237 VDPKRPKNYSPQQFMRDEEQMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGE 296 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGY 356 E+ L K+ GLE RL AQ +Y +RL+ EL VI +M F GY Sbjct: 297 M-----STEDFLVEKSKQGLEERLELLFPDPEERAQKRAEYDERLEIELKVINQMGFPGY 351 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP Sbjct: 352 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMP 411 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 412 DFDVDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KL+P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 472 KLVPPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 531 TKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKT 590 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+R Sbjct: 591 GLEPIDIASIPLEDQKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSG Sbjct: 651 PGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 710 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKS Sbjct: 711 YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKS 770 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 771 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830 Query: 825 CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882 F V D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+L Sbjct: 831 LYHFHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRIL 890 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+ SL K A K ++F G +D + Sbjct: 891 EKLIMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMF----GVLADAPEQVE 946 Query: 943 FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996 S N + + E+ LG Y +GHP+ Y K I R G + ++ T RG Sbjct: 947 QSYANVPPWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTT 1006 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|330807796|ref|YP_004352258.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375904|gb|AEA67254.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1173 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1068 (40%), Positives = 627/1068 (58%), Gaps = 71/1068 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A AGI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G +L ++N K P + I LLV A GY+ L EL+SR ++ Q S+ Sbjct: 64 ICGA--------DLWLSN--KDPDAPLSRISLLVMNALGYRNLTELISRGFIDGQRNGSI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ E +EGLIML+ G I A + + AE + +F DR Y+ +QR Sbjct: 114 IIEREWVAE-ASEGLIMLSAAKEGEIGLALLSGNPEEAETLARDWMSVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA PLVATN+ F+ ++D+EAH+ + + + D PR Sbjct: 173 NRPNDEEHLHAAVALADKIGAPLVATNDVRFIKQDDFEAHETRVCIGEGRAL---DDPRR 229 Query: 249 TPDH----YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + ++ YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 230 SKNYSNQQYLKSAEEMAELFSDLPEALENTVEIAKRCNIDVKLGKHFLPNFPIPDGMTI- 288 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLI 359 + R + GLE RL+ + Y A Q Y RL+FEL++I +M F GYFLI Sbjct: 289 ---DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 346 VMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+I Sbjct: 406 VDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMI 465 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P + + +A + R+ D + E+++KLEG+ R+ HA G+VI L Sbjct: 466 PFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKL 524 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV Sbjct: 525 TDFSPIYCDEEGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEE 584 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP Sbjct: 585 PLDIAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGP 644 Query: 655 IDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + NRK+G+ ++ H + P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 645 LQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTL 704 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ FI G + NGI +A NIF+L+ KFA YGFNKSH+A Sbjct: 705 GGADMLRRAMGKKKPEEMAKQRGGFIEGCATNGIDPDLAGNIFDLVEKFAGYGFNKSHSA 764 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R +++ P VN Sbjct: 765 AYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFK 824 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D RI Y L AIKGVG I EA D PF L DFC+RVD K++N+R L+ L+ Sbjct: 825 FTVNDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLI 884 Query: 887 FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928 +GALD G +R LL +++ K A+ + + H ++F Sbjct: 885 RSGALDRLGPYFQDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLF 944 Query: 929 --HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 + + + ++ +++ R + E+ LG Y +GHP+D Y+ +R+ + Sbjct: 945 VEEDADVYGNHRKAKELTLKE---RLKGEKDTLGLYLTGHPIDEYEGEIRRFA----RQR 997 Query: 987 VATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++ + +A M+++ + K +KG ++G++T + + EA+ F Sbjct: 998 IIDLKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|325576846|ref|ZP_08147461.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus parainfluenzae ATCC 33392] gi|325161052|gb|EGC73170.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus parainfluenzae ATCC 33392] Length = 1159 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1057 (40%), Positives = 627/1057 (59%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++G + ++ AAD A+A+TD N + F + + Sbjct: 1 MSAKPRFVHLRTHTDFSMIDGIAKVKPLVKACAADNMVALALTDFTNFCGVVRFYGETLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PIIG D+ ++ +L G+ F ++ LL EGY+ + L+S+ Y + Sbjct: 61 SGIKPIIGA--DVHVKSDL----CGEELF----TLTLLAKNNEGYKNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E EG+I+L+GG+ G I + +S AE + +++ F D Y Sbjct: 109 GYVDLPYIDREWLIE-HREGVIILSGGTQGDIAKKLLKENSSEAESAVSFYQEFFSDHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 ++L R D R Q ++LA H+LPLVATN+ +FL+ +D+EAH++ +A+ + Sbjct: 168 LSLSRTGRPDEERYIQAALKLAEEHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP R T Y ++ EM +F+D+P ALENTV IA+RC+ L++ LP+F E Sbjct: 228 PKRPKRYTEQQYFRSEEEMCDLFADIPSALENTVLIAQRCNVTLRLGQYFLPQFPTGEL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L KA GLE RLA + +Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDYLVMKAKEGLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V + YG V+QIITFG++ AKA +RDVGR L PY VDR+ K+ Sbjct: 403 DVDFCMDGRDRVIDHVADTYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKM 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP + +A + + + A +D V L+++++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLD-KAFEAEPQLQVAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R + Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLAREGK 581 Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PPVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKH 821 Query: 827 DFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V +N I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNENGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ K + K+ ++F +T Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQADMFG--------VLTETHEE 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYAHTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYSSTRLKDLTPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A ++VS + T+KG+RIG T + + + F Sbjct: 994 TAAGLLVSTRFATTKKGNRIGIATIDDRSGRLDLTLF 1030 >gi|293394718|ref|ZP_06639010.1| DNA-directed DNA polymerase III alpha subunit [Serratia odorifera DSM 4582] gi|291422844|gb|EFE96081.1| DNA-directed DNA polymerase III alpha subunit [Serratia odorifera DSM 4582] Length = 1172 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1051 (41%), Positives = 623/1051 (59%), Gaps = 48/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + ++ + AA PA+AITD NL ++F A AGI+ Sbjct: 14 PRFIHLRVHSDYSMIDGLAKVGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 73 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + +L + +GYQ L L+SR Y G Sbjct: 74 PIIGADFHV----------QSDVLGDELAQLTVLAANNDGYQNLTLLISRAYQRGYGAAG 123 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+GG G + + + E+ L +++ F D Y+ L R Sbjct: 124 PIIDRDWLVE-HREGLILLSGGRMGDVGKFLLRGNHAQVEQCLAFYQQYFPDNYYLELIR 182 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA +LP+VATN+ FL E+D++AH++ +A+ + RPR Sbjct: 183 TGRPDEENYLHAAVALATERDLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPR 242 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y++N EM +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 243 NYSPQQYMRNEDEMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----T 297 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL AQ +Y +RLD EL VI +M F GYFLIV +F Sbjct: 298 TEDFLVAKSKEGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEF 357 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K NN+PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 358 IQWSKDNNVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 417 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 418 MEKRDLVIEHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 477 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 478 GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 536 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 537 PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINKRRAKTDLPPIDI 596 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 597 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 656 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 657 MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 716 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM KQ+ F GA GI +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 717 MLRRAMGKKNPVEMAKQRGGFEDGAKARGIDGELSIKIFDLVEKFAGYGFNKSHSAAYAL 776 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 777 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVN 836 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESLVF 887 D+ I Y + AIKGVG I+EA F L D C+R D KKLNRR+LE L+ Sbjct: 837 DDGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIM 896 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D G R L+ SL + K A K ++F G ++ + S N Sbjct: 897 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYAN 952 Query: 948 SS-----VRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + V + E+ LG Y +GHP+ Y K I R G + ++ T RG +V Sbjct: 953 VAPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLV 1012 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V+ + T++G+RIG T + + E F Sbjct: 1013 VAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1043 >gi|255020984|ref|ZP_05293039.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC 51756] gi|254969589|gb|EET27096.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC 51756] Length = 1166 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1024 (42%), Positives = 618/1024 (60%), Gaps = 31/1024 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS YSL +G + + ++ + PAIA+TD NLF+ ++F Q A AG++ Sbjct: 5 GFVHLHVHSEYSLEDGIIPIKALIRRCVDWGMPAIAVTDHGNLFALVKFYQAAREAGVKA 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ L +Q + P S+VLL G++ L L+SR YL Sbjct: 65 IIGSEV------WLCPPDQPEDP----SSLVLLCRDRTGFRNLSRLLSRGYLEGLRHGRP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 ++ WLQ TEGLI L+ + G + RA + VA + + + F + Y+ LQR+ Sbjct: 115 QLQHDWLQG-HTEGLIALSAAARGDVGRALLQHQPDVARQWAERYAQWFPEAFYLELQRN 173 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 + V LAY +LP+VATNN+ FL ED++A D +A + + RPR Sbjct: 174 GEPGQEALLAATVDLAYALDLPVVATNNAHFLDAEDFKAFDARQCIAAGYTLDDERRPRR 233 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+H L + +EM+ F DLPEA TVEIA+RC+ L + LP + + I Sbjct: 234 FNPEHRLASPAEMLERFRDLPEACLQTVEIAKRCTVELTLGRYALPDYPTPDGSPI---- 289 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + + A GL RL I G A YR+RL E++VI +M F GYFLIVADFIQWA Sbjct: 290 DVYFQKAAEQGLAERLEALGI-DGAAATPYRERLLREVDVIRQMGFPGYFLIVADFIQWA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +++PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLN +R+SMPDFD+DFC ++R Sbjct: 349 KDHDVPVGPGRGSGAGSLVAYALRITDLDPIAYGLLFERFLNVERVSMPDFDVDFCMEQR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI+YV +KYG +RV QIITFG+L+A+A +RDVGR L +PY VD+L KL+P D + Sbjct: 409 DRVIQYVADKYGRDRVGQIITFGTLKARAVVRDVGRVLNLPYGFVDQLAKLVPGDLGMTL 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + +A+ + R + + V LL+I+ +LEG RHASTHA G+VIG PL+ +P++ Sbjct: 469 A-RALEESEELRRRQTEEDDVRELLDIALRLEGRPRHASTHAGGVVIGPEPLADRLPLFS 527 Query: 548 D-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLI 601 D VTQ + +EK GL+KFDFLGL+TLT+L ++ + A+ +DL I Sbjct: 528 DATEGSGNVTQLDKDDVEKMGLVKFDFLGLRTLTILDIAVKGINRARAAEGKAALDLQKI 587 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660 P DD T+ LL + T+ +FQLESSGMR L +QPD DI+ALV+L+RPGP+ + +V Sbjct: 588 PLDDPATFALLKSTHTVAVFQLESSGMRDLLRRLQPDNFGDIVALVALFRPGPLQSGMVD 647 Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK+G+ + HP + P+L ET GV++YQEQVMQ AQ+L+GYSL AD+LRRAMGK Sbjct: 648 DFIARKHGRAAVSYPHPDLKPVLAETYGVMVYQEQVMQAAQILAGYSLGGADILRRAMGK 707 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K EEM KQ+E F+ GA++ GI A IF+L+ KFA+YGFNKSH+AAYA++SYQTA++ Sbjct: 708 KKPEEMAKQREIFLQGAARRGIDSHQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYL 767 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP F+AA +T +MD+ +KI + R+ + I+ PSV ++F I + L Sbjct: 768 KAHYPSHFMAAVLTADMDHTDKIVAMIGECRRMGLAILSPSVQHSALEFLPVAEGIRFGL 827 Query: 840 AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKG+G + I+ A AD PF DF RVD ++LNRR LE+L+ AGALD G SR Sbjct: 828 GAIKGLGRGAVQAIIAAREADGPFRDFYDFLCRVDLQRLNRRALEALIKAGALDDLGPSR 887 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 LL SLD + A R ++ ++ + S E R + E+ Sbjct: 888 ECLLASLDAFLEAAAQTRAARDSQQISLLGAAEEQPSAPPWREA-PAWTGIERLQRERET 946 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LGFY SGHPL ++P L MG + + T + +A +VV ++ ++++G RI ++ Sbjct: 947 LGFYLSGHPLLEHRPQLAAMGAQ--DLGGLTAGSGLVLVAGIVVGRRSTRSKRGDRIYFL 1004 Query: 1019 TFSE 1022 T + Sbjct: 1005 TLED 1008 >gi|315127143|ref|YP_004069146.1| DNA polymerase III subunit alpha [Pseudoalteromonas sp. SM9913] gi|315015657|gb|ADT68995.1| DNA polymerase III subunit alpha [Pseudoalteromonas sp. SM9913] Length = 1163 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/1062 (41%), Positives = 616/1062 (58%), Gaps = 64/1062 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS +S+++G I+ K + PA+AITD N + F A AGI Sbjct: 3 APEFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPALAITDQMNFCGLVRFYGAAHNAGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQG 125 +PI+G + ++P FP PS + LL GY+ + L+S+ Y Sbjct: 63 KPIVGADFWV------------RSPEFPDEPSRLTLLAKDNIGYKNITLLISKAYQRGHV 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL ++ EGLI+L+G G + +A + + E + +K+ F D Y+ Sbjct: 111 FHRPVIDREWLVDL-KEGLIILSGAKDGDLGKALIKGNPAIVESVVSFYKQHFSDHYYIE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R +R + V+LA +LP+VATN +FL E++EAH++ +A+ + K Sbjct: 170 LIRTNRAQEENYLHMAVELATNEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKR 229 Query: 245 RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP R + + YLK +M +FSD+PEAL+NTVEIA+RC+ +Q+ LP + Sbjct: 230 RPKRFSQEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGEYFLPDYPTGSL--- 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLI 359 + + L + GLE RL Q Q+ Y +RL EL+VI +M F GYFLI Sbjct: 287 --KIDEFLVKVSQDGLEERL-QFLFPDEQERQEKRGEYDERLKIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP ++ +A + R +EA D V L+++ + LEG R+A HA G+VI + Sbjct: 464 PGDPGMTLA-KAFDVEPRLQEAYDGDEEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595 + +Y D PVTQF+ +E AGL+KFDFLGL+TLT+LQ +LD +R + Sbjct: 523 TDFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLKREGKQ 582 Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VD++ IP DD ++ LL T +FQLES GM+ + ++PDC ED+IALV+L+RPGP Sbjct: 583 PVDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V N +RK G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKLGREEISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSTFEEGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKTHYP EF+AA M+ +MDN +KI + + ++PP VN Sbjct: 763 AYALVSYQTLWMKTHYPAEFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNAGEYK 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885 F V I Y + AIKGVG I+EA A PF L DFC+RVD K+LN+RV E L Sbjct: 823 FTVNLQGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKL 882 Query: 886 VFAGALDCFGYSRMQ-----LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 ++AGALD G + Q LL SL + + A K ++F + Sbjct: 883 IYAGALDQLGPEKTQPGRATLLASLKDAMRAADQHNKAELLGQSDLFGL--------LAT 934 Query: 941 EKFSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 E VE + ++ + E+ LG Y +GHP++ Y+ L + T R Sbjct: 935 EPDEVEQAFIKATPLTDNQWLDGEKDTLGLYLTGHPINQYRRELGHYTSGRLIDLQPTNR 994 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A +V++ + +KG+R G +T + + + FP Sbjct: 995 DVVSTGAGLVIAARTLINKKGNRWGLITLDDKSARIDVRLFP 1036 >gi|224582079|ref|YP_002635877.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466606|gb|ACN44436.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 1144 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1040 (41%), Positives = 621/1040 (59%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K A+ PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVH--- 57 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 N + ++ + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 58 NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R + + E+ + ++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ FL +D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALENTVEIA+RC+ +++ LP+F + E+ L K+ GL Sbjct: 230 MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I++A + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG A +V++ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|94986701|ref|YP_594634.1| DNA polymerase III, alpha subunit [Lawsonia intracellularis PHE/MN1-00] gi|94730950|emb|CAJ54313.1| DNA polymerase III, alpha subunit [Lawsonia intracellularis PHE/MN1-00] Length = 1169 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1052 (40%), Positives = 634/1052 (60%), Gaps = 49/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL HS YSLL+GA+ L+ + + PA A+TD NLF+A F GI+P Sbjct: 3 NFVHLHCHSEYSLLDGAIRLDALCARTKEFGMPAAAVTDHGNLFAATHFYSICKEYGIKP 62 Query: 70 IIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IIGC++ + D D L ++ + ++LL EGY L++LV+R YL D Sbjct: 63 IIGCEVYVTKDHADKLSKFSKARH------HLILLARNKEGYHNLVKLVTRGYL-DGFHY 115 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF------------FFNSSQVAEKRLLTFK 175 R+ + L++ + G+ L+ +G + R F ++ +A++ + Sbjct: 116 KPRVDKTLLKQFSS-GITALSACLAGELPRTIMGKNIFVEKGGTFDDAISIAQE----YA 170 Query: 176 KLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++ + Y+ +Q + ++ + ++ +LA LPLVATN+ +L+ +D EAHD+L+ V Sbjct: 171 SIYPGQFYLEVQANMLPEQQKVNEKLYELAEYTNLPLVATNDCHYLNADDVEAHDILLCV 230 Query: 235 AHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + DR R D Y K+ EM FS LP A+ENT++IA CS + + P Sbjct: 231 QTQAKFNDTDRMRFNATDLYYKSSEEMEKAFSHLPIAIENTIKIAESCSVEMDFSKNLFP 290 Query: 294 RFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + ++ K ++E R A GL+ RL K ++Y +RL+ EL++I +M Sbjct: 291 VY------ELPKGVTPDDEFRRLAREGLQKRLEVYPNKKQLTTENYWKRLEQELDIICKM 344 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFLIV DFI WAK NNIPVGPGRGS GS+ A+AL IT+IDPL ++LLFERFLN + Sbjct: 345 GFPGYFLIVQDFINWAKDNNIPVGPGRGSATGSLVAWALRITNIDPLPYNLLFERFLNIE 404 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+S+PD D+DFC+D+R +VIRYV NKYG VAQI TFG ++AKA +RD+GR L M + + Sbjct: 405 RISLPDIDVDFCEDKRGDVIRYVMNKYGVNSVAQITTFGKMKAKAVVRDIGRVLDMSFKE 464 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 D + KLIP+D H L+A+ + + + +P + RLL+IS KLEGL RHASTHAAG Sbjct: 465 TDNIAKLIPDD-LHMTILKAMEVEPKLQALYNEEPHIKRLLDISMKLEGLVRHASTHAAG 523 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +V+ D+P+ + +P+YR + +L VTQF+MK +EK GL+KFDFLGL+T+TL+ +L + Sbjct: 524 VVVSDKPMDEYLPLYRGKKGEL-VTQFDMKMVEKVGLVKFDFLGLRTMTLIHTTLKTIKD 582 Query: 592 RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 +G + +L +P DD +TY LL+ T G+FQ+ESSGMRQ L ++P+C ED+IA+++LY Sbjct: 583 QGKIPPNLDTLPLDDPKTYELLSKGDTDGVFQVESSGMRQYLRMLKPNCFEDLIAMLALY 642 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+ + +V + RK+G I P + LK+T GVI+YQEQVMQIAQ+++GYSL Sbjct: 643 RPGPLGSGMVDEFIKRKHGTVTIEYPLPSLKDCLKDTYGVIVYQEQVMQIAQIVAGYSLG 702 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 EAD+LRRAMGKK E M K++ RF+ GA KN ++++IA +IF+L+ KFA+YGFNKSH+AA Sbjct: 703 EADLLRRAMGKKNPEAMAKERTRFVEGAIKNNVTESIASDIFDLMEKFAEYGFNKSHSAA 762 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+ISY TA++K H+ +EF+AA +T E N KI K+ + I I+ P + T C +F Sbjct: 763 YALISYHTAYLKAHFTLEFMAALLTSESGNQNKILKYTAACKDMGIDILKPDIQTSCREF 822 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I + L AIK VG I+ D PF SL D RV+ KK+ RRVLESLV Sbjct: 823 IVKDNSIVFGLCAIKNVGDDAIEKIITTRKKDGPFLSLLDMSFRVNLKKVTRRVLESLVK 882 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 GA D FG SR +L +LD I K+ + ++ A S + F+ E Sbjct: 883 GGACDSFGCSRAGMLTALDKIIARTYKKIKDEQSNQGSLLAFAPKIESVSLPGIGFTCEE 942 Query: 948 SSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 ++ + E+ LGF+ + HPL Y+ + ++G++ EE I+ A + Sbjct: 943 QNMPEWDEDEKLLYEKEALGFFLTSHPLQTYRQEIYRLGLQPLEEVREMNDKITIKSAII 1002 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V + ++ ++G+R+ +V + E FF Sbjct: 1003 VNNIREILNKRGNRMAFVRVEDLTASAEVTFF 1034 >gi|307822683|ref|ZP_07652914.1| DNA polymerase III, alpha subunit [Methylobacter tundripaludum SV96] gi|307736287|gb|EFO07133.1| DNA polymerase III, alpha subunit [Methylobacter tundripaludum SV96] Length = 1164 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1048 (41%), Positives = 632/1048 (60%), Gaps = 42/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+FVHL++H+ +SL++G + + ++ ++A PAIA+T+ NLFS ++F + A GI+ Sbjct: 3 PAFVHLRLHTEFSLVDGIVKIKPLVKRLAELNMPAIAVTEHANLFSLVKFYKAALGQGIK 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 I G + + ++ P P + LLV+ GY L EL+S+ Y Q + Sbjct: 63 AIAGSDVLVFNPED-----------PATPYRLTLLVNNHAGYITLTELISKAYQEGQHQG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + W+ E GLI L+G SG I +A + A++ + LF Y+ LQ Sbjct: 112 VPMLRQEWI-EANHNGLIALSGAMSGCIGKALLAENHDAAKRLAEFWGALFEQSFYLELQ 170 Query: 188 RHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R + R + V+LA LP+VATN+ F+ ++D+ AH+V + + S V+ RP Sbjct: 171 RVGKPEEERYIAAAVELALATGLPVVATNDVRFVYQQDFAAHEVRVCINQSRVLDDTRRP 230 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + T YL++ EM ++F+D+PEALENTVEIA+RC+ L + LP F E ++ + Sbjct: 231 KDYTDQQYLRSIEEMQALFADIPEALENTVEIAKRCNLQLTLGKNFLPDFPVPEGMNLGE 290 Query: 306 EEENELRNKAVAGLEVRLAQ-GAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVA 361 + +++ GLE RL A+ KG ++ Y RLDFEL +I +M F GYF+IVA Sbjct: 291 F----MAEESMKGLEERLQHYPAVGKGTDEENRRIYYDRLDFELKMITQMGFPGYFMIVA 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQWAK N IPVGPGRGSGAGS+ AYAL ITD+DP+ F LLFERFLNP+R+SMPDFD+D Sbjct: 347 DFIQWAKNNLIPVGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVD 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRRDEVI YV YG + VAQIIT+GS+ AKA +RDVGR L Y VDRL KL+P Sbjct: 407 FCMDRRDEVIDYVARHYGRDHVAQIITYGSMAAKAVIRDVGRVLGFGYGFVDRLSKLVPF 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + ++ +A+ D ++ + V L++++ LEG R+A HA G+VI L+ Sbjct: 467 EIGMTLT-KALKDSPELKQLYDTEEEVKALIDMALSLEGTSRNAGKHAGGVVISPTKLTD 525 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + VTQF+ +E GL+KFDFLGL+TLT++ +L + + + V Sbjct: 526 FTPLYCDQDGNNLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALQDINAKHKQLGKPLV 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+++IP DD ++Y LLT T +FQLES GM++ ++ ++PDC +DIIALV+L+RPGP++ Sbjct: 586 DITIIPRDDPDSYKLLTAAQTTAVFQLESRGMKELIKKLKPDCFDDIIALVALFRPGPLE 645 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V Y N K+G K HPL++P+LK T GVI+YQEQVMQIA+ ++ Y+L AD+LR Sbjct: 646 SGMVDDYINVKHGA-KAEYAHPLLEPILKPTNGVILYQEQVMQIAREMALYTLGGADMLR 704 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM K++++F +GA +N + + IA +F+L+ KFA YGFNKSH+AAYA+++Y Sbjct: 705 RAMGKKKPEEMAKERDKFTAGAIENQVDEKIATYVFDLMEKFAGYGFNKSHSAAYALVAY 764 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833 QTAW+K HY EF+AA M+ +MDN +K+ ++ +Q +++ PP++N F V D Sbjct: 765 QTAWLKAHYQPEFMAAVMSADMDNTDKVVILIEECKQMKLEVCPPTINVSKYKFTVNDAG 824 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L A+KGVG ++ E A+ F L D C RVD +K NRRVLE+L+ AGA D Sbjct: 825 HIVYGLGALKGVGEAAIEEMLVEREANGLFSGLYDLCKRVDLRKFNRRVLEALIRAGAFD 884 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVE--NSS 949 F +R L L + K A+ KN ++F +D + VE + + Sbjct: 885 EFDDNRAGHLAELPTVLKVAEQHGKNAQTGQNDLFGLAVNAENADDVDAYNTVVEPWSEN 944 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----RGNNIRLAAMVVSK 1004 R E+ VLG + +GHP++ Y+ LR+ E +A + R R A +VV Sbjct: 945 ERLAAEKLVLGLFLTGHPINQYEAELRQFTNGTIESLLANVERSKSRKMEARTAGLVVEV 1004 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++T+ G +G+ T + E F Sbjct: 1005 RTRQTKNGKVMGFATIDDRTGRLEIAAF 1032 >gi|54296983|ref|YP_123352.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Paris] gi|53750768|emb|CAH12175.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Paris] Length = 1148 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1047 (41%), Positives = 642/1047 (61%), Gaps = 53/1047 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VH+ +SL++G + + ++ + A +A+TD NLF+A++ + A AGI+PI Sbjct: 5 FVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKPI 64 Query: 71 IGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG L D++ DN + S+VLL GY+ L LVS+ Y Q Sbjct: 65 IGSDLPCHDLETPDN-------------IFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ L W+ E ++GLI L+GG G I +A N +A KR L + LF +R Y+ +Q Sbjct: 112 QPRVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQ 170 Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 R R + + ++V LA +LPLVATN+ F++E+D++AH+ + + ++ R Sbjct: 171 RTGRADELHYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRV 230 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + YL++ EM +FSDLP AL+NTVEI++RC+ L++ LP F + + Sbjct: 231 QQYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV-- 288 Query: 306 EEENELRNKAVAGLEVRLAQG---------AIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E L + + GLE RL Q +A+G +Y +RL EL+VI M F+GY Sbjct: 289 --EAYLSHLSEIGLEERLKQLFRDKSEGELLVARG----EYDKRLKIELDVINNMGFAGY 342 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP Sbjct: 343 FLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMP 402 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L Sbjct: 403 DFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLA 462 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP + +S +A+ + R + V L +++ KLEG+ R+A HA G+VI Sbjct: 463 KLIPFELGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGVTRNAGKHAGGVVIAP 521 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592 L+ +Y + S V+QF+ +E GL+KFDFLGL+TLT++ +L + ++ Sbjct: 522 SQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENA 581 Query: 593 GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G+ +D+S IP D T+ LL T +FQLES GM++ + +QPDC EDIIALV+L+R Sbjct: 582 GLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFR 641 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+ + +V + +RK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L Sbjct: 642 PGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGA 701 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+E F GA G+ + +A +IF+L+ KFA YGFNKSH+AAY Sbjct: 702 ADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAY 761 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++YQTAW+K HYP F+AA M+ +MDN +K+ F + +Q++PPS+N F Sbjct: 762 ALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFT 821 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D + I Y L AIKGVG + I+ E + + PF L FC R+D +K+NRRV+E+L+ Sbjct: 822 VSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIK 881 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D + R L SL+ K A+ +N+++ ++F+ + ++ +E S Sbjct: 882 SGAFDIWKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQNYVESKSWSE 941 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQ 1005 + R E E+ VLGFY +GHP D Y+ R++G I + ++ I + A VV+ + Sbjct: 942 AQ-RLEGEREVLGFYLTGHPADRYR---RELGDFIVPVGQLNPSLHKKAI-ICAQVVAIR 996 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G ++ + + +A F Sbjct: 997 KIITKRGKKLVIIGMDDATARIDAVVF 1023 >gi|307609756|emb|CBW99268.1| DNA polymerase III, alpha chain [Legionella pneumophila 130b] Length = 1148 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1047 (41%), Positives = 642/1047 (61%), Gaps = 53/1047 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VH+ +SL++G + + ++ + A +A+TD NLF+A++ + A AGI+PI Sbjct: 5 FVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKPI 64 Query: 71 IGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG L D++ DN + S+VLL GY+ L LVS+ Y Q Sbjct: 65 IGSDLPCHDLETPDN-------------IFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ L W+ E ++GLI L+GG G I +A N +A KR L + LF +R Y+ +Q Sbjct: 112 QPRVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQ 170 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 R R + + +++ LA +LPLVATN+ F+ E+D++AH+ + + ++ R Sbjct: 171 RTGRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRV 230 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + YL++ EM +FSDLP AL+NTVEI++RC+ L++ LP F + + Sbjct: 231 QQYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV-- 288 Query: 306 EEENELRNKAVAGLEVRLAQ-------GAI--AKGYHAQDYRQRLDFELNVIARMKFSGY 356 E L + + GLE RL Q G + A+G +Y +RL EL+VI M F+GY Sbjct: 289 --EAYLSHLSEIGLEERLKQLFRDKSEGELLAARG----EYDKRLKIELDVINNMGFAGY 342 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP Sbjct: 343 FLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMP 402 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L Sbjct: 403 DFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLA 462 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP + +S +A+ + R + V L +++ KLEG+ R+A HA G+VI Sbjct: 463 KLIPFELGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAP 521 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592 L+ +Y + S V+QF+ +E GL+KFDFLGL+TLT++ +L + ++ Sbjct: 522 SQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENA 581 Query: 593 GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G+ +D+S IP D T+ LL T +FQLES GM++ + +QPDC EDIIALV+L+R Sbjct: 582 GLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFR 641 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+ + +V + +RK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L Sbjct: 642 PGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGA 701 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+E F GA G+ + +A +IF+L+ KFA YGFNKSH+AAY Sbjct: 702 ADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAY 761 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++YQTAW+K HYP F+AA M+ +MDN +K+ F + +Q++PPS+N F Sbjct: 762 ALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFT 821 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D + I Y L AIKGVG + I+ E + + PF L FC R+D +K+NRRV+E+L+ Sbjct: 822 VSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIK 881 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D + R L SL+ K A+ +N+++ ++F+ + ++ +E S Sbjct: 882 SGAFDVWKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQNYVESKSWSE 941 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQ 1005 + R E E+ VLGFY +GHP D Y+ R++G I + ++ I + A VV+ + Sbjct: 942 AQ-RLEGEREVLGFYLTGHPADQYR---RELGDFIVPVGQLNPSLHKKAI-ICAQVVAIR 996 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G ++ + + +A F Sbjct: 997 KIITKRGKKLVIIGMDDATARIDAVVF 1023 >gi|261253713|ref|ZP_05946286.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891] gi|260937104|gb|EEX93093.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891] Length = 1159 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1046 (40%), Positives = 621/1046 (59%), Gaps = 41/1046 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A + GI+ Sbjct: 4 PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHSCGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + + ++ + + +L + GY+ L L+S+ YL + Sbjct: 64 PIIGA--DFLMQ-SAEFGDE-------LTRLTVLAADNTGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ +EG+I+L+GG SG I +A + + AE+ L ++ F DR Y+ L R Sbjct: 114 PVIDKEWLTEL-SEGVIILSGGKSGEIGKALLKGNQKAAEECLAFYQTHFPDRFYLELTR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + ++LA ++P+VATN + L E ++AH++ +A+ + RP+ Sbjct: 173 TGRADEETYLHFALELAEQSDIPVVATNEVVILEESLFDAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL++ EM +FSD+PEALEN+VEIA+RC+ +++ LP F + E Sbjct: 233 NYSPQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----E 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E L K+ GLE RL + +Y RL EL VI M F GYFLIV +F Sbjct: 288 ETEFLVKKSEEGLEDRLEFLFPDPAVRAERRPEYDDRLKIELEVINNMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L + VDR+ KL+P DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + E D + L+++ + LEG R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFKAEPALPELYANDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V + Sbjct: 527 PIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVAI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP D +++LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 ESIPLVDQASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E + H + +L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREAVSYPDEQWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTH+P EF+AA MT +MDN EK+ + + ++++PP +N F V Sbjct: 767 VSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYRFNVD 826 Query: 832 -DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I Y + AIKGVG I+EA + D F L DFC+R+D KK+N+RV+E L++AG Sbjct: 827 EEGAIVYGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIYAG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946 ALD G R L+ SL++ K A + ++F K T K Sbjct: 887 ALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYT--KVEPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ + Sbjct: 945 PEKVWLEGERDTLGLYLTGHPINAYIRELGKYTSCRLKDATPTRRDQSVTVAGLVIASRV 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG +T + + E F Sbjct: 1005 MTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|148360386|ref|YP_001251593.1| DNA polymerase III subunit alpha [Legionella pneumophila str. Corby] gi|148282159|gb|ABQ56247.1| DNA polymerase III, alpha subunit [Legionella pneumophila str. Corby] Length = 1148 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1047 (41%), Positives = 641/1047 (61%), Gaps = 53/1047 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VH+ +SL++G + + ++ + A +A+TD NLF+A++ + A AGI+PI Sbjct: 5 FVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKPI 64 Query: 71 IGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG L D++ DN + S+VLL GY+ L LVS+ Y Q Sbjct: 65 IGSDLPCHDLETPDN-------------IFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ L W+ E + GLI L+GG G I +A N +A KR L + LF +R Y+ +Q Sbjct: 112 QPRVQLQWIPEF-SRGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQ 170 Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R + + +++ LA +LPLVATN+ F+ E+D++AH+ + + ++ R Sbjct: 171 RTGRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRV 230 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + YL++ EM +FSDLP AL+NTVEI++RC+ L++ LP F + + Sbjct: 231 QHYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV-- 288 Query: 306 EEENELRNKAVAGLEVRLAQ-------GAI--AKGYHAQDYRQRLDFELNVIARMKFSGY 356 E L + + GLE RL Q G + A+G +Y +RL EL+VI M F+GY Sbjct: 289 --EAYLSHLSEVGLEERLKQLFRDKSEGELLAARG----EYDKRLKIELDVINNMGFAGY 342 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP Sbjct: 343 FLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMP 402 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L Sbjct: 403 DFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLA 462 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP + +S +A+ + R + V L +++ KLEG+ R+A HA G+VI Sbjct: 463 KLIPFELGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAP 521 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592 L+ +Y + S V+QF+ +E GL+KFDFLGL+TLT++ +L + ++ Sbjct: 522 SQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENA 581 Query: 593 GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G+ +D+S IP D T+ LL T +FQLES GM++ + +QPDC EDIIALV+L+R Sbjct: 582 GLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFR 641 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+ + +V + +RK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L Sbjct: 642 PGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGA 701 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+E F GA G+ + +A +IF+L+ KFA YGFNKSH+AAY Sbjct: 702 ADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAY 761 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++YQTAW+K HYP F+AA M+ +MDN +K+ F + +Q++PPS+N F Sbjct: 762 ALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFT 821 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D + I Y L AIKGVG + I+ E + + PF L FC R+D +K+NRRV+E+L+ Sbjct: 822 VSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIK 881 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D + R L SL+ K A+ +N+++ ++F+ + ++ +E S Sbjct: 882 SGAFDVWKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQNYVESKSWSE 941 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQ 1005 + R E E+ VLGFY +GHP D Y+ R++G I + ++ I + A VV+ + Sbjct: 942 AQ-RLEGEREVLGFYLTGHPADQYR---RELGDFIVPVSQLNPSLHKKAI-ICAQVVAIR 996 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G ++ + + +A F Sbjct: 997 KIITKRGKKLVIIGMDDATARIDAVVF 1023 >gi|238918790|ref|YP_002932304.1| DNA polymerase III subunit alpha [Edwardsiella ictaluri 93-146] gi|238868358|gb|ACR68069.1| DNA polymerase III subunit alpha [Edwardsiella ictaluri 93-146] Length = 1162 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1057 (40%), Positives = 631/1057 (59%), Gaps = 60/1057 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL VHS YS+++G ++ K+AA PA AITD NL ++F A AGI+ Sbjct: 4 PRFIHLHVHSDYSMIDGLAKTAPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P++G + + + +T + ++ LL +GYQ L +L+S Y G + Sbjct: 64 PLVGADVLV----------RSETMGDELSALTLLACDNQGYQNLTQLISHAYQRGYGAEG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL GLI+L+G G + + + +A + + +++ F D ++ L R Sbjct: 114 PTIDRDWLIAY-RAGLILLSGARQGDVGKLLLRGNQTLAGECVDFYQRHFPDSYFLELVR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + V+LA +LPLVATN+ FL D++AH++ +A+ + R Sbjct: 173 TGRPDE--ESYLHLAVELAQQRDLPLVATNDVRFLETSDFDAHEIRVAIHDGYTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR + Y+++ EM +F+DLPEAL+N+VEIA+RC+ +++ LP+F E Sbjct: 231 PRNYSAQQYMRSEEEMCELFADLPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGEM---- 286 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361 E L KA GLE RL + A+ Y +RL+ EL VI +M F GYFLIV Sbjct: 287 -TTEAFLVKKAHEGLEERLTFLFPDEADRARLRPPYDERLEIELKVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 406 FCMEKRDRVIDHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + A+R + V Sbjct: 525 FAPLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRACQGLEPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E++ H + P+L+ T GVI+YQEQVMQIAQ+L+GYSL Sbjct: 645 SGMVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA NG++ +A++IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADLLRRAMGKKKPEEMAKQRSVFEEGARNNGVNGELAMHIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGQYHFH 824 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEA--SADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 V D I Y + AIKGVG I+EA S ++ F L D C+R D+KKLNRR++E L Sbjct: 825 VNDEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARTDTKKLNRRMMEKL 884 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + +GA D G R L+ SL + K A+ + ++F G ++ E V Sbjct: 885 IMSGAFDRLGPHRAALMSSLSDALKAAEQHARAEAIGQVDMF----GVLAE----EPEQV 936 Query: 946 ENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNI 995 E S + + E+ LG Y +GHP+ Y K I R G ++ T RG Sbjct: 937 EQSYGSVPPWPAQMVLDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTDRGKMT 996 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V+ + T++G+RIG T + + E F Sbjct: 997 TAVGLVLGARVMTTKRGNRIGMCTLDDRSGRLEVMLF 1033 >gi|253699799|ref|YP_003020988.1| DNA polymerase III subunit alpha [Geobacter sp. M21] gi|251774649|gb|ACT17230.1| DNA polymerase III, alpha subunit [Geobacter sp. M21] Length = 1155 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1046 (39%), Positives = 632/1046 (60%), Gaps = 37/1046 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S +FVHL +HS YSLL+GA+ + ++L K+ PA+A+TD N+F LEF K GI Sbjct: 3 SANFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDKGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-K 126 +PIIG ++ I Q L + ++LL G++ L LVS Y +G Sbjct: 63 KPIIGSEVYIAPQSRL-LKQAPAAGEANSYHLILLCENMTGFKNLSYLVSAGY--KEGFY 119 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYV 184 + RI L + EGLI+L+ G + A+ +++ E R + + F Y+ Sbjct: 120 RRPRIDKELLLK-HKEGLIVLSACLQGEV--AYLAGRNKMDEARAAASWYAENFPGSYYI 176 Query: 185 NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ ++ ++ +++++A +LPLVATN+ +L+ ED AH++L+ + +S Sbjct: 177 ELQENKLPEQDVANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDP 236 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R + D Y+K EM + F PEAL NTV+IA RC + P + E + Sbjct: 237 NRMAFSVDEFYVKTPEEMAAAFHYAPEALSNTVKIAERCHLEFDFNTYYFPAYEAPEGET 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIA--------KGYHAQDYRQRLDFELNVIARMKFS 354 + ++ E E + AGL RL + I +GYHA RL EL+ I +M F Sbjct: 297 LDQQLERESK----AGLIERLKKIRIKYNLTEEQEQGYHA-----RLRIELDCIKQMGFP 347 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIVADFI WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+S Sbjct: 348 GYFLIVADFINWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERIS 407 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD D+DFCQDRR+EVI+Y+ KYG E+V QIITFG++ A+ +RDVGRAL + + +VDR Sbjct: 408 MPDIDVDFCQDRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDR 467 Query: 475 LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 + KL+P ++L+ A+ + + +E ADP V ++ ++ +LEGL RHASTHAAG+V Sbjct: 468 IAKLVPE--VLGITLEKALEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLV 525 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592 + R + + P+Y+D ++ TQ++MK++EK GL+KFDFLGLK LT++ + + + Sbjct: 526 VAPRQMEEFCPVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGK 585 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D++L+ DD E+Y LL T G+FQLESSGM++ L ++P C EDIIA+ +LYRP Sbjct: 586 DPNFDITLLRDDDAESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRP 645 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+ + +V + RK+G+++ V P ++P+LK+T GVI+YQEQVMQI++ L+GYSL A Sbjct: 646 GPLGSGMVDDFIERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK E+M K++++F+ G+ K G+ IF+L+AKFA+YGFNKSH+AAYA Sbjct: 706 DLLRRAMGKKDAEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +++YQTA++K HYPVEF+AA +T +M N +K+ K D R+ I+++PP +N F+V Sbjct: 766 LVAYQTAFLKAHYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRV 825 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 D + + L A+K VG I+EA D+PF L DFC RVD +++N+RV+E+L+ GA Sbjct: 826 LDKAMRFGLGAVKNVGEGAIEAIIEARGDEPFKDLFDFCERVDLRRVNKRVIEALIKCGA 885 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVEN 947 DC G R QL+ L++ Q V++ R + ++F + G L + Sbjct: 886 FDCTGAKRSQLMAGLEDAAATGQRVQQERESAQASLFGAAEIVRGGNGGGNRLPDIPEWD 945 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 R E+ +GF+ +GHPLD Y +R+ + +R+ + + ++ Sbjct: 946 EKYRLGCEKEAIGFFITGHPLDRYVADMRRFSTVDCSTILDAKEKGEVRICGVPSTVKEL 1005 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+KG R+ ++ + E FP Sbjct: 1006 ITKKGDRMAFLALEDLVGSVEVVVFP 1031 >gi|161612604|ref|YP_001586569.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161361968|gb|ABX65736.1| hypothetical protein SPAB_00295 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 1144 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1040 (41%), Positives = 621/1040 (59%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K A+ PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVH--- 57 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 N + ++ + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 58 NELLGDE-------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+++GG G + R + + E+ + ++ F DR ++ L R R + Sbjct: 110 EGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ FL +D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALENTVEIA+RC+ +++ LP+F + E+ L K+ GL Sbjct: 230 MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I++A + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S V + Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG A +V++ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|238751435|ref|ZP_04612927.1| DNA polymerase III subunit alpha [Yersinia rohdei ATCC 43380] gi|238710302|gb|EEQ02528.1| DNA polymerase III subunit alpha [Yersinia rohdei ATCC 43380] Length = 1171 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1050 (41%), Positives = 621/1050 (59%), Gaps = 48/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A AG++ Sbjct: 15 PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGVK 74 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L EGYQ L L+S Y G Sbjct: 75 PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187 I WL + +GLI+L+GG G + + F +QV + L F ++ F D Y+ L Sbjct: 125 PIIDRDWLIK-HKDGLILLSGGRMGDVGK-FILRGNQVLVDQCLEFYQQHFPDSYYLELI 182 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R + V LA LP+VATN+ F++E D++AH++ +A+ + RP Sbjct: 183 RTGRPDEENYLHAAVALATERGLPVVATNDVRFIAESDFDAHEIRVAIHDGFTLVDPKRP 242 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F E Sbjct: 243 KNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM----- 297 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L K+ GLE RL AQ Y +RL+ EL VI +M F GYFLIV + Sbjct: 298 STEDFLVEKSKQGLEERLELLFPDPEIRAQKRPAYDERLEIELKVINQMGFPGYFLIVME 357 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 358 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDF 417 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P D Sbjct: 418 CMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPD 477 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 478 PGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 536 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D Sbjct: 537 APLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPID 596 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 597 IASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQS 656 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL A Sbjct: 657 GMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGA 716 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM KQ+ F GA G++ +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 717 DMLRRAMGKKNPAEMAKQRSVFEDGAKNQGVNGELAIKIFDLVEKFAGYGFNKSHSAAYA 776 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 777 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 836 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L+ + Sbjct: 837 NDDGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKLIMS 896 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947 GA D G R L+ SL K A K ++F G +D + S N Sbjct: 897 GAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANV 952 Query: 948 ----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + E+ LG Y +GHP+ Y K I R G ++ T RG A +V+ Sbjct: 953 PRWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVI 1012 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG T + + E F Sbjct: 1013 ASRVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|227114702|ref|ZP_03828358.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 1160 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1049 (41%), Positives = 617/1049 (58%), Gaps = 46/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ K AA PA+AITD NL ++F A AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG ++ D L + + +L GYQ L L+S Y G Sbjct: 64 PIIGADFCVE-SDELG---------DELAHLTVLAMNNAGYQNLTLLISHAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+GG G + R + AE+ L +++ F R Y+ L R Sbjct: 114 PTIDRDWLVE-HQEGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEHFPQRYYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA H +P+VATN F+S +D++AH++ +A+ + RPR Sbjct: 173 TSRPDEESYLHAAVELATKHGVPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L + GLE RL + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVQCSKKGLEERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K +D+ Sbjct: 527 PLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM KQ+ F GA G++ +AV IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 A D G R L+ SL + K A K ++F G +D + S Sbjct: 887 AFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYSTVP 942 Query: 948 ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y K I R ++ T RG +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYASGVRLKDMHPTDRGKMTTAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031 >gi|91775600|ref|YP_545356.1| DNA polymerase III, alpha subunit [Methylobacillus flagellatus KT] gi|91709587|gb|ABE49515.1| DNA polymerase III, alpha subunit [Methylobacillus flagellatus KT] Length = 1149 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/979 (43%), Positives = 615/979 (62%), Gaps = 37/979 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSF+HL+ HS YS+++G + + + + + ADQ PA+A+TD +NLF A++F + A G++ Sbjct: 4 PSFIHLRCHSEYSVVDGTVRIGDYVKQAVADQMPALALTDLSNLFGAIKFYKAARGKGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P+IG ++ + N+ K P ++LL + GY RL EL+SR +L +Q + Sbjct: 64 PLIGA--------DIWLENESKRDQPY--RLLLLCHSHVGYLRLCELLSRAFLHNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL+E GTEGLI+L+G +G I +A + A+ + LF R Y+ LQR Sbjct: 114 AEIKREWLREGGTEGLILLSGAMAGDIGQALLQGNFSQAQTLAGEWAALFPQRFYIELQR 173 Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H + Y S + LA ELP+VAT+ F++ +D++AH+ + +A V++ RP Sbjct: 174 AGHPQQEAYIASALA-LASELELPVVATHPVQFMAPDDFKAHEARVCIAEGYVLADNRRP 232 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 ++ TP+ Y K++++M +F+D+PEAL N+VEIA+RC+ L + LP+F + + Sbjct: 233 KLFTPEQYFKSQAQMAELFADIPEALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVAD 362 + L +A AGLE RL +G +Y RL FE N+I +M F GYFLIVAD Sbjct: 291 --DEYLVAQAKAGLEERLKVLFPDEGQREAKRPEYEARLQFETNIIIQMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DP+R++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPMRYALLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P++ VD + KLIPN+ Sbjct: 409 CQEGRDRVIDYVKRKYGLDAVSQIATFGTMAAKAVIRDVGRVLDLPFTFVDSVAKLIPNE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +S +A+ + + +E R + V LLE++ +LEGL R+ HA G++I +S Sbjct: 469 LGISLS-EALEKEPQLKERREQEEEVAELLELALRLEGLTRNIGMHAGGVLISPGKISDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597 P+Y + V+Q++ +E GL+KFDFLGL+TLT+L +L+ A+ G++ +D Sbjct: 528 SPVYCQASGESVVSQYDKDDVEAVGLVKFDFLGLRTLTILAMALESANLQRAEHGLEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P DD +Y LL T +FQLES GM+ L+ +PD EDIIALV+LYRPGP+D Sbjct: 588 FETLPIDDKASYQLLKAANTTAVFQLESRGMKDMLKQAKPDVFEDIIALVALYRPGPMDL 647 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I + RK+G +++ HP +P+LKET G+++YQEQVMQIAQ+++GYSL AD+LRRAM Sbjct: 648 IPDFCRRKHGLQRVEYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRAM 707 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EEM KQ+ FI GA KNG S+ A +F+L+ KFA YGFNKSHAAAYA+++YQTA Sbjct: 708 GKKKPEEMAKQRSIFIEGAVKNGTSEKQAGELFDLMEKFASYGFNKSHAAAYALVAYQTA 767 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIY 836 ++K HYP FLAA+M+ +M+N + I F D ++++PP +N FK + +I Sbjct: 768 YLKAHYPAAFLAATMSADMNNTDNIHLFYDDCIFNGLEVLPPDINASEYRFKPINAKQIL 827 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L AIKG G I+ A + PF L DFCSR+D +K+NRRV+ESL+ AGA D Sbjct: 828 YGLGAIKGTGWAAIELILAARQEGGPFKDLFDFCSRLDLRKVNRRVIESLIRAGAFDKLE 887 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFE 953 +R LL + A+ + + +++F G+ D L + R + Sbjct: 888 PNRAALLAGVSLAISAAE--QSGAASGQDSLF----GSVIDSAVHVLPETPPWTEKQRLQ 941 Query: 954 NEQRVLGFYFSGHPLDVYK 972 E+ LGFYFSGHP Y+ Sbjct: 942 EEKAALGFYFSGHPYADYQ 960 >gi|332140484|ref|YP_004426222.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Deep ecotype'] gi|327550506|gb|AEA97224.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Deep ecotype'] Length = 1154 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1053 (41%), Positives = 616/1053 (58%), Gaps = 55/1053 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F+HL+VHS +S+++G + IL K+AA + PA+AITD N+ ++F +A GI Sbjct: 2 SSPFIHLRVHSDFSMMDGLNKVKPILGKVAALEMPAVAITDQMNMCGLVKFYSEAHNLGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQ--GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 +PIIG + +TN+ G PF + LL EGY+ + L+S+ YL Sbjct: 62 KPIIGT--------DFWVTNEAFGDEPF----RLTLLAMNNEGYKNITILISKAYLRGHL 109 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I +WL E EG+I+L+G G + N++++ + L ++ F DR Y+ Sbjct: 110 AHRAVIDQAWLAE-HAEGVIILSGAQHGDVGVGLMKNNAKLLDSALAFYESYFPDRFYLE 168 Query: 186 LQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R +G + Y V+LA LP+VATN F+ E +EAH++ + + + Sbjct: 169 LIRTGRQGEEDYLH-HAVELAEQRGLPVVATNEVCFIDREGFEAHEIRVCIHDGYTLDDN 227 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R + YL+ EMV +FSD+PEA+ENTVEIA+RC+ ++++ LP+F Sbjct: 228 RRPKRYSEQQYLRTSEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPTG---- 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L + GLE RL + +Y RL EL VI +M F GYFLI Sbjct: 284 -GMTTEDFLVKVSEEGLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 403 VDFCMDRRDEVIDHVAELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E +D V L+++++ LEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTLE-KAFKAEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++Q ++D + + + V VD+ Sbjct: 522 TDFSPLYCDDEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGKNVDVDI 581 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S IP +D +++ L T +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + Sbjct: 582 SAIPLEDPKSFRTLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSG 641 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + +L+ T G+I+YQEQVMQIAQ ++GYSL AD Sbjct: 642 MVDNFIDRKHGREEISYPDAEYQHECLQEILEPTYGIILYQEQVMQIAQEMAGYSLGGAD 701 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA N I +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 702 LLRRAMGKKKPEEMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYAL 761 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SYQT W+K HYP EF+AA M+ +MDN +KI + + I+I+PP +N F V Sbjct: 762 VSYQTLWLKVHYPAEFMAAVMSADMDNTDKIVTLVDECERMGIEILPPDLNAGKYKFTVD 821 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 RI Y + AIKGVG I+EA F L DFC++VD K++N+RVLE LV AG Sbjct: 822 SKGRIVYGIGAIKGVGEGPIEAIIEAREIQGAFKDLFDFCAKVDIKRVNKRVLEKLVLAG 881 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A+D G R L+ +L A K + ++F +T E V+ + Sbjct: 882 AMDNLGPHRATLMATLPEALAAAGQHAKAESFGQSDMFG--------LLTTEPEEVQQAF 933 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 V E E+ LG Y +GHP++ Y LR + T + + Sbjct: 934 ADVPEWPEKVWLEGEKDTLGLYLTGHPINQYADELRYYTDGRLVDLKPTNKDQLASAVGL 993 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V+ + ++G R VT + + + FFP Sbjct: 994 VLGVRVMTNKRGRRWAIVTLDDKSARMDVRFFP 1026 >gi|302037892|ref|YP_003798214.1| DNA polymerase III subunit alpha [Candidatus Nitrospira defluvii] gi|300605956|emb|CBK42289.1| DNA polymerase III, alpha subunit [Candidatus Nitrospira defluvii] Length = 1150 Score = 769 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1037 (41%), Positives = 630/1037 (60%), Gaps = 30/1037 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA ++ ++ ++ + QPA+A+TD N+F A+EF +KA AG++PI Sbjct: 5 FVHLHLHTQYSLLDGANQIDPLMQQVKSFGQPAVAMTDHGNMFGAVEFYRKAKEAGVKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ M ++ ++LL + +GYQ LI+LVS+ YL + R Sbjct: 65 IGCE--AYMAPGSRLEKNSHLAHNDYYHLILLATNLKGYQNLIKLVSKAYL-EGFYYKPR 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA--EKRLLTFKKLFG-DRLYVNLQ 187 + LQ+ EGLI L+G SG + A+ +A K ++++FG D Y+ LQ Sbjct: 122 MDKEILQQ-HHEGLIGLSGCLSGEV--AYLIGQKDLAGATKAAGEYREIFGKDNYYLELQ 178 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + + R ++++ ++PL TN+ +L +ED HD+++ + ++ +R Sbjct: 179 ANGLEHQRIANDGLLEIHKKLDIPLAGTNDCHYLKKEDSRPHDLMLCLQTGKTINDPNRM 238 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + D Y+K+ + +S F ++P A+ NTV+IA C+ L ++ LP+F E Sbjct: 239 KFDTDQLYVKSTEQALSEFKEMPTAVSNTVKIAEACTLDLALNKTYLPQFKVPEG----Y 294 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E+ + A+ GL RL + + A Y+ RL E+ VI M F+GYFLIV D I+ Sbjct: 295 TRESYVEQLALEGLAARLKERPSSIPEIA--YQVRLKEEVAVICSMGFAGYFLIVWDIIK 352 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ IPVGPGRGS AGS+ AYAL ITD+DPL +SLLFERFLNP+R+S+PD D+DFC D Sbjct: 353 FARSRGIPVGPGRGSAAGSLVAYALRITDLDPLVYSLLFERFLNPERVSLPDIDMDFCMD 412 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV +KYG + VAQIITFG+++AKAA+RDVGR L+MPY++VDR+ KL+P+D Sbjct: 413 RRDEVINYVIHKYGEDHVAQIITFGTMKAKAAIRDVGRVLEMPYAEVDRIAKLVPDDLKM 472 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + R +E D V L+ ++Q LEGL RHASTHAAGIVI D+PL++ VP+ Sbjct: 473 TLD-KALEQEPRLKELVDKDVKVKELMSVAQSLEGLARHASTHAAGIVISDQPLTEHVPL 531 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-----LSL 600 Y+ + ++ VTQ++M +EK GL+KFDFLGLKTLT++ ++ + + V D + Sbjct: 532 YKGPKDEI-VTQYSMGDVEKIGLVKFDFLGLKTLTMIHRAETLVNE--VHPDQPPLRVEQ 588 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +PFDD +T+ LL++ T G+FQLESSGMR L G++PD EDIIA+++LYRPGP+D I Sbjct: 589 LPFDDPDTFALLSSGKTTGVFQLESSGMRDLLMGLKPDRFEDIIAIIALYRPGPMDLIPD 648 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK GK I P ++P+LK+T GVI+YQEQVM IA ++G+SL +AD+LRRAMGKK Sbjct: 649 FIKRKQGKIPIAYEMPELEPILKDTYGVIVYQEQVMAIANKVAGFSLGQADILRRAMGKK 708 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM+K + +F+ GA + IS+ A ++EL+ KFA YGFNKSHAAAYAV+ YQTA++K Sbjct: 709 KPEEMEKLRVQFLEGAKQKKISEKKADKLYELIQKFAGYGFNKSHAAAYAVVCYQTAYLK 768 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYP EF+AA MT +M N +KI + + R I ++PP VN +F V D I + LA Sbjct: 769 AHYPTEFMAALMTTDMGNADKIVGYFTECRGLGIPVLPPDVNQSQKNFAVVDQSIRFGLA 828 Query: 841 AIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIK VG I+E + PF S D RVD +KLN+R++E L+ AGA D G R Sbjct: 829 AIKNVGEGAVEAIIEVRNETGPFRSFFDLFRRVDLRKLNKRMMEGLIKAGAFDSMGGRRS 888 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS---DKITLEKFSVENSSVRFENEQ 956 Q L LD ++K R +IF + D+ L N + E+ Sbjct: 889 QYLAVLDQAMDEGMSIQKERALGQTSIFGDDTVGMPQQLDEPALPDVPEWNQGELLKYER 948 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 + GFY S HPL Y+ ++ + G ++L ++ + + T+KG R+ Sbjct: 949 ELTGFYISAHPLARYEAAIQLFANTTTMQIPDVPDGREVKLCGIITAVKSMLTKKGDRMA 1008 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++T + E FP Sbjct: 1009 YITLEDLHGLVEVIAFP 1025 >gi|238787220|ref|ZP_04631019.1| DNA polymerase III subunit alpha [Yersinia frederiksenii ATCC 33641] gi|238724482|gb|EEQ16123.1| DNA polymerase III subunit alpha [Yersinia frederiksenii ATCC 33641] Length = 1160 Score = 769 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1050 (41%), Positives = 620/1050 (59%), Gaps = 48/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A +AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L EGYQ L L+S Y G Sbjct: 64 PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187 I WL EGLI+L+GG G + + F +QV + L F ++ F + Y+ L Sbjct: 114 PIIDRDWLIN-HKEGLILLSGGRMGDVGK-FILRGNQVQVDQCLEFYQEHFPNSYYLELI 171 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R + V LA LP+VATN+ F+ E D++AH++ +A+ + RP Sbjct: 172 RTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRP 231 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 232 KNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM----- 286 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L K+ GLE RL AQ +Y +RL+ EL VI +M F GYFLIV + Sbjct: 287 STEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P D Sbjct: 407 CMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPD 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 467 PGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D Sbjct: 526 APLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPID 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 586 IASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL A Sbjct: 646 GMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DMLRRAMGKKNPAEMAKQRSVFEDGAKSQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L+ + Sbjct: 826 NDDGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMS 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947 GA D G R L+ SL K A K ++F G +D + S N Sbjct: 886 GAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANV 941 Query: 948 ----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + E+ LG Y +GHP+ Y K I R G ++ T RG A +V+ Sbjct: 942 PPWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVI 1001 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG T + + E F Sbjct: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|330936801|gb|EGH40958.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. pisi str. 1704B] Length = 1173 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1067 (39%), Positives = 625/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMTELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDVGR Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVGRVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A D PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++R + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|262276512|ref|ZP_06054321.1| DNA polymerase III alpha subunit [Grimontia hollisae CIP 101886] gi|262220320|gb|EEY71636.1| DNA polymerase III alpha subunit [Grimontia hollisae CIP 101886] Length = 1159 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1056 (40%), Positives = 627/1056 (59%), Gaps = 61/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A ++G++ Sbjct: 4 PRFIHLRVHSDFSMVDGLGKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYNTAQSSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + T + I +L + GY+ L L+S+ YL + Sbjct: 64 PIIGA--DFKMQTD--------TFGDDLCQITVLAANNAGYKNLTLLISKAYLRGHIQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I + WL E+ +GLI+L+GG +G + +A + +A + +++ F D Y+ L R Sbjct: 114 PVIDIQWLAEL-KDGLIILSGGKNGDVGKALLKGNMALAAQCAAFYQQHFPDAYYIELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+ A LP+VATN FL+ + ++AH++ +A+ + RP+ Sbjct: 173 TGRADEEAYLHFAVEFAEEQGLPVVATNEVCFLTPDLFDAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL++ EM +F D+PEAL NTVEIA+RC+ ++++ LP F + E Sbjct: 233 NYSPQQYLRSEEEMCELFQDIPEALANTVEIAKRCNVTVRLNEYFLPNFPTEGM-----E 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 L K+ GLE RL + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 IGEFLIKKSKEGLEERLEFLFPDPEVRAEKRPEYDERLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MDKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLAELYEADEEVRELIDTCRILEGCTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V + Sbjct: 527 PLYCDSEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALSMINPRLEKMGQAPVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I DD ++ LL T +FQLES GM++ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 DAIKMDDQASFRLLQNAETTAVFQLESRGMKELIKRLKPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +V N +RK+G+E + S+ ++DP T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 647 MVDNFIDRKHGREAVSYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRATFEQGAIKNGVDGELAMRIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT +MDN +KI ++ R+ + I+PP VN Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVGLVEECRRMKLTILPPDVNAGLYR 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG +I++A + F L DFC+R+D+KK+N+RV+E L Sbjct: 823 FNVNEKGEIVYGIGAIKGVGEAPIENIIKAREEGGYFRDLFDFCARIDTKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + +GA+D G R ++ SLD+ K A ++H A + +T V Sbjct: 883 IQSGAMDRLGPHRAAMMASLDDALKSA--------SQHHQAEAFGQTDMFGVLTAAPEEV 934 Query: 946 EN---------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 E+ V E E+ LG Y +GHP++ Y L+ E++ AT R Sbjct: 935 EHKYTKVPPWPDKVWLEGERETLGLYLTGHPINSYVKELKHYITWRLEDAHATKRDVVST 994 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +V++ + T++G+RIG +T + + E F Sbjct: 995 VAGLVIAARVMTTKRGTRIGILTLDDRSGRMEVMLF 1030 >gi|301155192|emb|CBW14656.1| DNA polymerase III alpha subunit [Haemophilus parainfluenzae T3T1] Length = 1159 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1057 (40%), Positives = 628/1057 (59%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++G + + ++ AA+ A+A+TD N + F + + Sbjct: 1 MSTQPRFVHLRTHTDFSMIDGIVKVKPLVKACAANNMVALALTDFTNFCGVVRFYGETLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PIIG D+ ++ L G+ F ++ LL EGY+ + L+S+ Y + Sbjct: 61 SGIKPIIGA--DVHVKSEL----CGEELF----TLTLLAKNNEGYKNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E EG+I+L+GG+ G I + +S AE + +++ F D Y Sbjct: 109 GYVDLPYIDQEWLIE-HREGVIVLSGGTQGDIAKKLLKENSFEAESAVSFYQEFFPDHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 ++L R D R Q ++LA H+LPLVATN+ +FL+ +D+EAH++ +A+ + Sbjct: 168 LSLSRTGRPDEERYIQAALKLAEAHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP R T Y ++ EM +FSD+P ALENTV IA+RC+ L++ LP+F + Sbjct: 228 PKRPKRYTEQQYFRSEEEMCDLFSDIPSALENTVLIAQRCNVTLRLGEYFLPKFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + +Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDYLVMKSKEGLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ K+ Sbjct: 403 DVDFCMDGRDRVIDHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKM 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+++++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R + Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLTREGK 581 Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PLVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKH 821 Query: 827 DFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V +N I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNENGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ K + K+ ++F +T Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQTDMFG--------VLTETHEE 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYAHTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYSSTRLKDLTPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++VS + T+KG+RIG T + + + F Sbjct: 994 TVAGLLVSTRFATTKKGNRIGIATIDDRSGRLDLTLF 1030 >gi|170718818|ref|YP_001783421.1| DNA polymerase III subunit alpha [Haemophilus somnus 2336] gi|168826947|gb|ACA32318.1| DNA polymerase III, alpha subunit [Haemophilus somnus 2336] Length = 1158 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1046 (41%), Positives = 623/1046 (59%), Gaps = 42/1046 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S++ G + ++ + A+A+TD N + F +A ++G++ Sbjct: 4 PRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D+ ++ +L G F + LL EGY + L+S+ Y ++G + Sbjct: 64 PIIGA--DVLVKSDL----LGDELF----ELTLLAKNNEGYHNITLLLSKAY--ERGYYN 111 Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + I SWL E EG+I+L+GG +G + + N+S E + +++ F D Y++L Sbjct: 112 LPYIDQSWLAE-HHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSLS 170 Query: 188 R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R DRY +S ++ LA +LPLVATN+ FLS ED+EAH++ +A+ + R Sbjct: 171 RTGRSDEDRYIQSALI-LAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKR 229 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P++ + Y ++ EM +F+D+P ALENTV IA+RC+ +++ LP+F + Sbjct: 230 PKLYSSQQYFRSEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYFLPKFPTGDL---- 285 Query: 305 KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + ++Y RL EL+VI +M F GYFLIV Sbjct: 286 -SPEDFLIQKSKEGLEERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVM 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 345 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 405 FCMDKRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPA 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP ++ +A + R E D V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 DPGMTLT-KAFEAEPRLSEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITD 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R VK V Sbjct: 524 FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAV 583 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+S IP +D ++++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP++ Sbjct: 584 DISTIPLNDPDSFNLLKKAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLE 643 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G E + H + P+L+ T GVI+YQEQVMQIAQ+L+GYSL Sbjct: 644 SGMVQNFIDRKHGVEPVSYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGG 703 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM Q++ F GA GI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 704 ADLLRRAMGKKKPEEMAAQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAY 763 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT EMDN +KI F + + + I+PP +NT F Sbjct: 764 ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFS 823 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+ A F L D C+RVD K++NRR E+L+ Sbjct: 824 VNDNGEIVYGIGAIKGVGEVPINAIVSAREQGGIFKDLFDLCARVDLKQINRRTFENLIK 883 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D G R L Q+L++ K + K+ ++F + D T + Sbjct: 884 SGAFDKLGPHRAALAQNLEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRW 943 Query: 948 SSVR-FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 S + + E+ LG Y S HP+ Y L E RG + ++V+ + Sbjct: 944 SEKQILDGERETLGLYLSSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRF 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+KG+R+G T + + + F Sbjct: 1004 AVTKKGNRLGIATLDDRSGLLDITLF 1029 >gi|197334671|ref|YP_002156775.1| DNA polymerase III subunit alpha [Vibrio fischeri MJ11] gi|197316161|gb|ACH65608.1| DNA polymerase III subunit alpha [Vibrio fischeri MJ11] Length = 1159 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1054 (40%), Positives = 625/1054 (59%), Gaps = 57/1054 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+++G + ++ + PA+A+TD NL +++ A AGI+ Sbjct: 4 PKFVHLRVHSDFSMVDGLSKVPPLVKNVGELGMPAMALTDFTNLCGLVKYYFAAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q+ G F ++ +L EGY+ L L+S Y + + Sbjct: 64 PIIGADFKVQSQEF------GNELF----NLTVLAKDNEGYKNLTLLISEAYQRGHVQHT 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL EGLI+L+GG SG + +A + ++ + + ++ F + Y+ L R Sbjct: 114 PVMDKEWLVN-HKEGLILLSGGKSGDVGKALLKGNKELVNECVEFYQTHFPEHYYLELTR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + V+LA LP+VATN+ F+ +D++AH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDPRR 230 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P++ D YL++ EM +FSD+PEALEN+VEIA+RC+ +++ LP F + Sbjct: 231 PKLYSDQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E+ L K+ GLE RLA + +Y +RL EL+VI +M F GYFLIV Sbjct: 287 -KIEDFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID Sbjct: 346 EFIQWSKDNAIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P+ Sbjct: 406 FCMDKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPS 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP ++ +A + + E AD V L+++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLA-KAFEAEPQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPLYCDADGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLEKEGKDPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD +++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E++ H + L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 645 SGMVDNFIDRKHGREEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN +KI + + + ++PP VN+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLTVLPPDVNSGLYRFN 824 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I Y + AIKGVG +I+EA + F L DFC+R+D+KK N+RV+E L+ Sbjct: 825 VDEKGAIVYGIGAIKGVGEGPIENIIEARNKGGHFKDLFDFCARIDTKKTNKRVVEKLIR 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGALD G R L+ SLD+ K A + + ++F +T VE Sbjct: 885 AGALDRLGPHRAALMASLDDAMKAAGQHHQAESFGQSDMFG--------VLTQAPEEVEQ 936 Query: 948 S---------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 + V E E+ LG Y +GHP++ Y L + ++ T R + +A Sbjct: 937 AYIHVPKWPEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVA 996 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG +T + + E F Sbjct: 997 GLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|54293935|ref|YP_126350.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Lens] gi|53753767|emb|CAH15225.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Lens] Length = 1148 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1047 (41%), Positives = 641/1047 (61%), Gaps = 53/1047 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VH+ +SL++G + + ++ + A +A+TD NLF+A++ + A AGI+PI Sbjct: 5 FVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKPI 64 Query: 71 IGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG L D++ D T+ S+VLL GY+ L LVS+ Y Q Sbjct: 65 IGSDLPCHDLEAPD-------------TIFSLVLLCQDTTGYKNLTCLVSKAYQEGQYHG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ L W+ E ++GLI L+GG G I +A N +A KR L + LF +R Y+ +Q Sbjct: 112 QPRVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQ 170 Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 R R + + +++ LA +LPLVATN+ F+ E+D++AH+ + + ++ R Sbjct: 171 RTGRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRV 230 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + YL++ EM +FSDLP AL+NTVEI++RC+ L++ LP F + + Sbjct: 231 QQYSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDGTTV-- 288 Query: 306 EEENELRNKAVAGLEVRLAQ-------GAI--AKGYHAQDYRQRLDFELNVIARMKFSGY 356 E L + + GLE RL Q G + A+G +Y +RL EL VI M F+GY Sbjct: 289 --EAYLSHLSEIGLEERLKQLFRDKSEGELLAARG----EYDKRLKIELAVINNMGFAGY 342 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMP Sbjct: 343 FLIVADFIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMP 402 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L Sbjct: 403 DFDIDFCMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLA 462 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP + +S +A+ + R + V L +++ KLEG+ R+A HA G+VI Sbjct: 463 KLIPFELGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAP 521 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592 L+ +Y + S V+QF+ +E GL+KFDFLGL+TLT++ +L + ++ Sbjct: 522 SQLTDFTAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENA 581 Query: 593 GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G+ +D+S IP D T+ LL T +FQLES GM++ + +QPDC EDIIALV+L+R Sbjct: 582 GLSPIDISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFR 641 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+ + +V + +RK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L Sbjct: 642 PGPLQSGMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGA 701 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+E F GA G+ + +A +IF+L+ KFA YGFNKSH+AAY Sbjct: 702 ADLLRRAMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAY 761 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++YQTAW+K HYP F+AA M+ +MDN +K+ F + +Q++PPS+N F Sbjct: 762 ALVAYQTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFT 821 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D + I Y L AIKGVG + I+ E + + PF L FC R+D +K+NRRV+E+L+ Sbjct: 822 VSDEKTIIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIK 881 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D + R L SL+ K A+ +N+++ ++F+ + ++ +E S Sbjct: 882 SGAFDVWKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLEDKADEQNYVESKSWSE 941 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQ 1005 + R E E+ VLGFY +GHP D Y+ R++G I + ++ I + A VV+ + Sbjct: 942 AQ-RLEGEREVLGFYLTGHPADQYR---RELGDFIVPVGQLNPSLHKKAI-ICAQVVAIR 996 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G ++ + + +A F Sbjct: 997 KIITKRGKKLVIIGMDDATARIDAVVF 1023 >gi|322831603|ref|YP_004211630.1| DNA polymerase III, subunit alpha [Rahnella sp. Y9602] gi|321166804|gb|ADW72503.1| DNA polymerase III, alpha subunit [Rahnella sp. Y9602] Length = 1160 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1050 (41%), Positives = 619/1050 (58%), Gaps = 48/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + ++ A+ PA+AITD NL ++F A AG++ Sbjct: 4 PRFIHLRVHSDYSMVDGLAKVGPLVKCAASLGMPALAITDFTNLCGLVKFYGAAHGAGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG L++ Q + + + +L +GYQ L L+SR Y G Sbjct: 64 PIIGADLNV----------QSEILGDELAQLTVLAMNNQGYQNLTLLISRAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187 + L WL E+ EGLI+L+G G + + F + + + L F ++ F DR Y+ L Sbjct: 114 PIVDLEWLAEL-NEGLILLSGARMGDVGK-FLTRGNDLQVSQCLDFYQQYFPDRYYLELI 171 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R + V LA LP+VATN+ F+ D++AH++ +A+ + RP Sbjct: 172 RTGRAEEENYLHAAVALATERGLPVVATNDVRFMVPTDFDAHEIRVAIHDGFTLDDPKRP 231 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T Y+++ EM +F DLPEAL+N+VEIA+RC+ +++ LP+F + Sbjct: 232 RNYTSQQYMRSEDEMCELFEDLPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDM----- 286 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L K+ GLE RL AQ +Y +RLD EL VI +M F GYFLIV + Sbjct: 287 TTEDFLVEKSKIGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIQWSKDNSVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P D Sbjct: 407 CMEKRDRVIDHVSEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPD 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A A + + E AD V L++++++LEG+ R+A HA G+VI ++ Sbjct: 467 PGMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARQLEGVTRNAGKHAGGVVIAPTKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D Sbjct: 526 APLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEAPLD 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD +++ +L T +FQLES GM+ ++ ++PD ED+IALV+L+RPGP+ + Sbjct: 586 IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL A Sbjct: 646 GMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DMLRRAMGKKNPVEMAKQRGGFEEGAKSRGIDGELAIKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 766 LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888 D I Y + AIKGVG I+EA + F L D C+R D KKLN+R+LE L+ + Sbjct: 826 NDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFKELFDLCARADVKKLNKRILEKLIMS 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947 GA D G R L+ SL + K A K ++F G ++ + S N Sbjct: 886 GAFDRLGPHRAALMSSLSDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEKSYANV 941 Query: 948 ----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + E+ LG Y +GHP+ Y K I R G + ++ T RG +V+ Sbjct: 942 MPWPEQTVLDGERETLGLYLTGHPITQYLKEIERYGGGQRLKDMHPTERGKMTVAVGLVL 1001 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG T + + E F Sbjct: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|77360939|ref|YP_340514.1| DNA polymerase III subunit alpha [Pseudoalteromonas haloplanktis TAC125] gi|76875850|emb|CAI87071.1| DNA polymerase III, alpha subunit; the entire polymerase contains 10 subunits [Pseudoalteromonas haloplanktis TAC125] Length = 1163 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1060 (41%), Positives = 614/1060 (57%), Gaps = 62/1060 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS +S+++G I+ K Q PAIAITD NL + F + A + GI Sbjct: 3 APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNLCGLVRFYETAHSTGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQG 125 +PI+G + ++P F PS I +L +GY+ L L+S+ Y Sbjct: 63 KPIVGADFWL------------RSPEFENEPSRITILAKDNQGYKNLTLLISKAYQRGHV 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E+ GLI+L+G G + +A N+ V E + +K+ F D Y+ Sbjct: 111 FHRPVIDRDWLIELKA-GLIILSGAKDGDLGKALLKNNPSVIESVVSFYKQHFSDNYYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R +R + V+LA +LP+VATN +FL E++EAH++ +A+ + K Sbjct: 170 LVRTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKR 229 Query: 245 RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP R + + YLK +M +FSD+PEAL+NTVEIA+RC+ +Q+ LP + Sbjct: 230 RPKRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGSL--- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + E+ L + GLE RL + +Y +RLD EL VI M F GYFLIV Sbjct: 287 --KIEDFLVKVSQDGLEERLQFLFPDEQERKEKRVEYDERLDIELGVINEMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC DRRDEVI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ K+IP Sbjct: 405 DFCMDRRDEVIDHVSALYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMIP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + R +EA D V L+++ + LEG R+A HA G+VI ++ Sbjct: 465 GDPGMTLA-KAFDIEPRLQEAYDGDNEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 +Y D PVTQF+ +E AGL+KFDFLGL+TLT+LQ +LD +R + Sbjct: 524 DFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLARTGKEP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD++ IP DD ++ LL T +FQLES GM+ + ++PD ED+IALV+L+RPGP+ Sbjct: 584 VDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDSFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 644 QSGMVDNFIDRKLGREEISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F GA NGI +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT WMKTH+P EF+AA M+ +MDN +KI + + ++PP VN F Sbjct: 764 YALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFKF 823 Query: 829 KVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886 V I Y + AIKGVG I+EA A PF L DFC+RVD K+LN+RV E L+ Sbjct: 824 TVNLQGEIVYGIGAIKGVGEAPVEAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKLI 883 Query: 887 FAGALDCFGYSRMQ-----LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 ++GALD G + Q LL SL + + A K ++F + E Sbjct: 884 YSGALDQLGPEKTQSGRATLLASLKSAMRAADQHNKAELLGQSDLFGL--------LATE 935 Query: 942 KFSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 VE + ++ + E+ LG Y +GHP++ Y+ L+ + T R Sbjct: 936 PDEVEQAFIKATGLTDNEWLDGEKETLGLYLTGHPINQYRRELKYYTSGKLVDLQPTNRD 995 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +V+S + +KG+R +T + + + + Sbjct: 996 VVSTAAGLVISARVLINKKGNRWALITLDDKSARIDVRLY 1035 >gi|123443470|ref|YP_001007443.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090431|emb|CAL13299.1| DNA polymerase III, alpha chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 1171 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1049 (40%), Positives = 618/1049 (58%), Gaps = 46/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A +AG++ Sbjct: 15 PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 74 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L EGYQ L L+S Y G Sbjct: 75 PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + EGLI+L+GG G + + + ++ L +++ F D Y+ L R Sbjct: 125 PIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVDQCLEFYQEHFPDSYYLELIR 183 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA LP+VATN+ F+ E D++AH++ +A+ + RP+ Sbjct: 184 TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 244 NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 298 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL AQ Y +RL+ EL VI +M F GYFLIV +F Sbjct: 299 TEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEF 358 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 359 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 419 MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 479 GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D+ Sbjct: 538 PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 598 ASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL AD Sbjct: 658 MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 718 MLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 778 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L+ +G Sbjct: 838 DEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSG 897 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 A D G R L+ SL K A K ++F G +D + S N Sbjct: 898 AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANVP 953 Query: 948 ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y K I R G ++ T RG A +V++ Sbjct: 954 PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|107103154|ref|ZP_01367072.1| hypothetical protein PaerPA_01004223 [Pseudomonas aeruginosa PACS2] Length = 1173 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1064 (40%), Positives = 636/1064 (59%), Gaps = 63/1064 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ +SL++G + + + +A PA+A+TD +N+ S ++F + A AGI+P Sbjct: 4 SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I C DI + + + P + + LL A+GY+ L EL+SR + Q + Sbjct: 64 I--CGADIWLA-----SREEDGP---LSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W++E EGLI L+ G I A AE L + ++F +R YV +QR Sbjct: 114 IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R D V LA PLVATN+ F+ +ED+EAH+ + + + RPR Sbjct: 173 SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ +EM +FSDLPEALENTVEIA+RC+ +Q+ LP F I Sbjct: 233 YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ LR+ + GLE RL + + K Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DDYLRHASFEGLEERL-EVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 348 FIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV + YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 408 CMEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 467 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ +D + E++ KLEG+ R HA G+VI L+ Sbjct: 468 VGMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDF 526 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + A+RG++ V+ Sbjct: 527 SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKRGLEPVN 586 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 587 IDFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 646 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 647 GMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGA 706 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ FI G NGI +A NIF+L+ KFA YGFNKSH+AAY Sbjct: 707 DMLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 766 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+KTH+P F+AA +T +M N +K+ ++ R ++I+ P VN F V Sbjct: 767 LVSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTV 826 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ RI Y L AIKGVG I E A+ PF++L DFC RVD K++N+R LE+L+ A Sbjct: 827 DDDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRA 886 Query: 889 GALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929 GALD G +R LL +++ + A+ ++ + H ++F Sbjct: 887 GALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAE 946 Query: 930 -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 E +++ +++ +++ R + E+ LG Y +GHP+D Y+ +R+ + E + Sbjct: 947 PEADVYANHRKVKELTLKE---RLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVE-LK 1002 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R +A ++V+ + K +KG ++G+VT + + EA+ F Sbjct: 1003 PARDTQT-VAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045 >gi|332174819|gb|AEE24073.1| DNA polymerase III, alpha subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1155 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1054 (40%), Positives = 628/1054 (59%), Gaps = 63/1054 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS YS+L+G + ++ ++ + PA+A+TD N+ ++F ++A A GI+PI Sbjct: 6 FVHLRVHSDYSMLDGLNKIKPLISQVKSLNMPAVALTDQMNMCGLVKFYEQAHANGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + Q V + LL + +GY+ + L+S+ YL + Sbjct: 66 IGTDFWV----------QSSALEDHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAV 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188 I WL E +EG+I+L+GG G + + +AEK +++ F DR Y+ L R Sbjct: 116 IDQEWLAE-HSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQEHFPDRFYLELTRTA 174 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G + Y + V+ A H LP+VATN F+S +++EAH++ +A+ ++ RP++ Sbjct: 175 RVGEEDYIH-RAVEWAGQHNLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKL 233 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDDIQ 304 + Y+++ EM +F+D+P+A+ENTVEIA+RC+ + + LP F + D + Sbjct: 234 YSEQQYMRSSEEMCELFADIPQAIENTVEIAKRCNVSVLLGTYFLPDFPTGDMSIADFLV 293 Query: 305 KEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 K E GLE RLA + +AK +Y +RL EL VI +M F GYFL Sbjct: 294 KVSEE--------GLEKRLAFLFPDEEERLAK---RPEYDERLKVELVVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDRRDEVIDHVAEMYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP P ++ +A ++ R E D V L+++++ LEG+ R+A HA G+VI Sbjct: 463 IPPTPGMTLT-KAFEEEPRLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDK 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++Q ++D ++ +G+ +D Sbjct: 522 ITDFAPLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMISSGKGIDID 581 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD +++ LL T +FQLES GM+ ++ ++PD EDIIALV+L+RPGP+ + Sbjct: 582 ILAIPMDDKKSFKLLQRSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQS 641 Query: 658 IVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ +SGYSL A Sbjct: 642 GMVDNFIDRKHGREAISYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGA 701 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+E F +GA N I +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 702 DLLRRAMGKKKPEEMAKQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYA 761 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+KTHYP EF+AA M+ +MDN +KI + ++ I ++PP VN F V Sbjct: 762 LVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVTLVDECQRMGITLLPPDVNAGSYKFTV 821 Query: 831 -GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + RI Y + AIKGVG I+EA + + F L DFC++VD+K++N+RVLE LV+A Sbjct: 822 DSEGRIVYGIGAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYA 881 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD G R ++ +L A ++H +H + +T E VE + Sbjct: 882 GALDNLGPHRASIMATLPEAIAAA--------DQHAKAESHGQSDMFGLLTTEPEQVEQA 933 Query: 949 SVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 V+ + E+ LG Y +GHP++ Y +R + T + Sbjct: 934 FVKVPPWPEKVWLDGEKDTLGLYLTGHPINQYLQEIRHYCTGRLVDLKPTNKDVVSYAVG 993 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V+ + ++G R G VT + + + FFP Sbjct: 994 LVLGVRVMTNKRGRRWGIVTLDDKSARIDVRFFP 1027 >gi|312959407|ref|ZP_07773924.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens WH6] gi|311286124|gb|EFQ64688.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens WH6] Length = 1173 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1065 (40%), Positives = 623/1065 (58%), Gaps = 65/1065 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A AGI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G +L ++N K P + I LL GY+ L EL+SR ++ Q SV Sbjct: 64 ICGA--------DLWLSN--KDPDNALSRISLLAMNGVGYRNLTELISRGFIDGQRNGSV 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ E +EGLIML+ G I A + Q AE + ++F DR Y+ +QR Sbjct: 114 IIEREWVAE-ASEGLIMLSAAKEGEIGLALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 +R D V LA PLVATN+ F+ +ED+EAH+ + + + R + Sbjct: 173 NRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKN 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + YLK+ EM +FSDLPEALEN+VEIA+RC+ +++ LP F + I Sbjct: 233 YSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RL+ + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E+++KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEEGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEAPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ H + P+L T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 648 GMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ FI G + N I +A NIF+L+ KFA YGFNKSH+AAY Sbjct: 708 DMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R +++ P VN F V Sbjct: 768 LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV 827 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I EA D PF L DFC+RVD K++N+R L+ L+ +G Sbjct: 828 NDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887 Query: 890 ALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----H 929 ALD G +R LL +++ K A+ + + H ++F Sbjct: 888 ALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEE 947 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 + +++ + +++ R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 948 DADVYANHRKAKDLTLKE---RLKGEKDTLGLYLTGHPIDEYEGEIRRFA----RQRIID 1000 Query: 990 IRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A M+++ + K +KG ++G++T + + EA+ F Sbjct: 1001 LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|270156895|ref|ZP_06185552.1| DNA polymerase III subunit alpha [Legionella longbeachae D-4968] gi|289164676|ref|YP_003454814.1| DNA polymerase III, alpha chain [Legionella longbeachae NSW150] gi|269988920|gb|EEZ95174.1| DNA polymerase III subunit alpha [Legionella longbeachae D-4968] gi|288857849|emb|CBJ11696.1| DNA polymerase III, alpha chain [Legionella longbeachae NSW150] Length = 1148 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/981 (42%), Positives = 615/981 (62%), Gaps = 39/981 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VH+ +SL++G + + ++ + + ++A+TD NLF+A++ + A AGI+PI Sbjct: 5 FVHLRVHTEFSLVDGLVRVKPLMKALPSRGMYSVALTDHCNLFAAVKHYKSAIEAGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L ++ V S++LL +EGY+ L L+S+ Y Q + R Sbjct: 65 IGSDLPCHNPEHPD----------RVFSLILLCLNSEGYKNLTCLISKAYQEGQYQGQPR 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ + + GLI L+GG SG I +A + ++A R L +++LF +R Y+ +QR Sbjct: 115 VQNQWIPDY-SAGLIALSGGKSGDIGQALLADDEELATSRALYWQELFSNRFYLEIQRTG 173 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRV 248 R + +++ LA +LPLVATN+ FL ++D+EAH+ + + T+ + + Sbjct: 174 RPEEADYNKKLIALANKLKLPLVATNDVRFLDKDDFEAHEARVCIHEGYTLADPRREQKY 233 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YL++ EM S+F+DLP AL NTVEI++RC+ L + LP F + + E Sbjct: 234 SAQQYLRSADEMASLFADLPSALSNTVEISKRCTVKLDLGNNYLPNFPIPDGSTV----E 289 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGYFLIVA 361 N L + + GLE RL Q I K +D Y +RL EL+VI M F+GYFLIVA Sbjct: 290 NYLSHLSKTGLEERLLQ--IFKNKSPEDLLNTRSEYDKRLQIELDVINNMGFAGYFLIVA 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID Sbjct: 348 DFIQWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDID 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L KLIP Sbjct: 408 FCMEGRDRVIDYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPF 467 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + ++ +A+ + + + V L++++ KLEG+ R+A HA G+VI L+ Sbjct: 468 ELGITLN-KALEQEEELKRRYTEEEEVKELIDLALKLEGITRNAGKHAGGVVIAPSQLTD 526 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVK----V 596 +Y + S V+QF+ +E AGL+KFDFLGL+TLT++ +L + QRG + + Sbjct: 527 FTAIYCEEGSSQIVSQFDKDDVEAAGLVKFDFLGLRTLTIIDWALATVNRQRGREGLPPI 586 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+S IP DD ++ LL T +FQLES GM++ + +QPDC EDIIALV+L+RPGP+ Sbjct: 587 DISQIPTDDPASFDLLKACQTTAVFQLESRGMKELINRLQPDCFEDIIALVALFRPGPLQ 646 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V + +RK+G+ + HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L AD+LR Sbjct: 647 SGMVDDFIDRKHGRAAVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLR 706 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ+E F GA++ G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++Y Sbjct: 707 RAMGKKKPEEMAKQREIFTQGATERGVDEKVATHIFDLMEKFAGYGFNKSHSAAYALVAY 766 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833 QTAW+K HYP F+AA M+ +MDN +K+ F + ++++PPS+N F V D+ Sbjct: 767 QTAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLKVLPPSINHSMYHFTVVDDA 826 Query: 834 RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + I+EA + L FC R+D +K+NRRVLE+L+ +GA D Sbjct: 827 TIIYGLGAIKGVGESAIDCILEARDLGGSYPDLFSFCQRLDLRKVNRRVLEALIKSGAFD 886 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVR 951 + R L SL+ K A+ +N+++ ++F+ + G + L K E + R Sbjct: 887 QWKVERAVLTASLEKALKIAEKEHQNQSSGQFDLFSLLDDGAKEQEYVLCKSWSE--AQR 944 Query: 952 FENEQRVLGFYFSGHPLDVYK 972 E E+ VLGFY +GHP D Y+ Sbjct: 945 LEGEREVLGFYLTGHPADQYR 965 >gi|50119986|ref|YP_049153.1| DNA polymerase III subunit alpha [Pectobacterium atrosepticum SCRI1043] gi|49610512|emb|CAG73957.1| DNA polymerase III alpha subunit [Pectobacterium atrosepticum SCRI1043] Length = 1160 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1054 (41%), Positives = 623/1054 (59%), Gaps = 56/1054 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ K AA PA+AITD NL ++F A AG++ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKVGPLVKKTAALGMPALAITDFTNLCGLVKFYGGAHGAGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG ++ D L + + +L EGYQ L L+S Y G Sbjct: 64 PIIGADFYVE-SDELG---------DELAHLTVLAMDNEGYQNLTLLISHAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+GG G + R + AE+ L +++ F R Y+ L R Sbjct: 114 PTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYLELTR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + V+LA + LP+VATN F+S +D++AH++ +A+ + R Sbjct: 173 TSRPDE--ESYIHAAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ LP+F E D Sbjct: 231 PRHYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGEMSTAD 290 Query: 302 DIQKEEENELRNKAVAGL---EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + + + L ++ + EVR+A+ +Y +RLD EL VI +M F GYFL Sbjct: 291 FLVQCSKKGLEDRLESLFPDPEVRVAR--------RPEYDERLDIELGVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N++PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMEKRDMVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 +P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 463 VPPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTK 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 522 ITDFAPLYCDSEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKLGQ 581 Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +D++ IP D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPG Sbjct: 582 EPIDIATIPLGDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EM KQ+ F GA G++ +AV IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 762 AAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLY 821 Query: 827 DFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D+ I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE Sbjct: 822 HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEK 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L+ SL + K A K ++F G +D + S Sbjct: 882 LIMSGAFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQS 937 Query: 945 VEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLA 998 V + E+ LG Y +GHP+ Y K I R ++ T RG Sbjct: 938 YSTVPPWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAAGVRLKDMHPTDRGKMTTAV 997 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 998 GLVLAARVMITKRGNRIGICTLDDRSGRLEIMLF 1031 >gi|313646755|gb|EFS11214.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T] Length = 1140 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1030 (41%), Positives = 620/1030 (60%), Gaps = 54/1030 (5%) Query: 32 ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91 ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q +L Sbjct: 7 LVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQCDLLGDE---- 60 Query: 92 PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151 + + +L + GYQ L L+S+ Y G I WL E+ EGLI+L+GG Sbjct: 61 ----LTHLTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWLIEL-NEGLILLSGGR 115 Query: 152 SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELP 210 G + R+ +S + ++ + +++ F DR ++ L R R + V+LA LP Sbjct: 116 MGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLP 175 Query: 211 LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPE 269 +VATN+ F+ D++AH++ +A+ + RPR +P Y+++ EM +F+D+PE Sbjct: 176 VVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPE 235 Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QG 326 AL NTVEIA+RC+ +++ LP+F + E+ L +A GLE RLA Sbjct: 236 ALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAFLFPD 290 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ Sbjct: 291 EEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLV 350 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QI Sbjct: 351 AYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQI 410 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506 ITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + + E AD Sbjct: 411 ITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADE 469 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVTQF+ +E A Sbjct: 470 EVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYA 529 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIF 621 GL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ +L T +F Sbjct: 530 GLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVF 589 Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI----- 674 QLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E+I Sbjct: 590 QLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQ 649 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 H + +L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EEM KQ+ F Sbjct: 650 HESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAE 709 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT Sbjct: 710 GAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTA 769 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHI 853 +MDN EK+ + + ++I+PP +N+ F V D+ I Y + AIKGVG I Sbjct: 770 DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 829 Query: 854 MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912 +EA + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ SL + K A Sbjct: 830 IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 889 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYF 963 K ++F G ++ E +E S V + E+ LG Y Sbjct: 890 DQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYL 941 Query: 964 SGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 +GHP++ Y K I R +G ++ T RG I A +VV+ + T++G+RIG T + Sbjct: 942 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1001 Query: 1023 PAKEYEANFF 1032 + E F Sbjct: 1002 RSGRLEVMLF 1011 >gi|238784895|ref|ZP_04628895.1| DNA polymerase III subunit alpha [Yersinia bercovieri ATCC 43970] gi|238714212|gb|EEQ06224.1| DNA polymerase III subunit alpha [Yersinia bercovieri ATCC 43970] Length = 1171 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1056 (40%), Positives = 622/1056 (58%), Gaps = 49/1056 (4%) Query: 4 YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 YL+ + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 9 YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 69 HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181 G I WL EGLI+L+GG G + + F +Q+ + L F ++ F Sbjct: 119 GYGAAGPIIDRDWLIR-HKEGLILLSGGRMGDVGK-FILRGNQIQVDQCLEFYQEHFPGS 176 Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R R + V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 177 YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 237 VDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGK 296 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGY 356 E+ L K+ GLE RL AQ +Y +RL+ EL VI +M F GY Sbjct: 297 M-----STEDFLVEKSKQGLEERLELLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGY 351 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP Sbjct: 352 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMP 411 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 412 DFDVDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KL+P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 472 KLVPPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 531 TKITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKT 590 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+R Sbjct: 591 GLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSG Sbjct: 651 PGPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSG 710 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKS Sbjct: 711 YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKS 770 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 771 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830 Query: 825 CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882 F V D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+L Sbjct: 831 LYHFHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRIL 890 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+ SL K A K ++F G +D + Sbjct: 891 EKLIMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMF----GVLADAPEQVE 946 Query: 943 FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996 S N + + E+ LG Y +GHP+ Y K I R G + ++ T RG Sbjct: 947 QSYANVPPWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTT 1006 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|318606915|emb|CBY28413.1| DNA polymerase III alpha subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 1171 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1049 (40%), Positives = 619/1049 (59%), Gaps = 46/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A +AG++ Sbjct: 15 PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 74 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L +GYQ L L+S Y G Sbjct: 75 PIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGYGAAG 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + EGLI+L+GG G + + + E+ L +++ F D Y+ L R Sbjct: 125 PIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYLELIR 183 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA LP+VATN+ F+ E D++AH++ +A+ + RP+ Sbjct: 184 TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 244 NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 298 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL AQ Y +RL+ EL VI +M F GYFLIV +F Sbjct: 299 TEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEF 358 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 359 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 419 MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 479 GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D+ Sbjct: 538 PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 598 ASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL AD Sbjct: 658 MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 718 MLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 778 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG + ++EA + F L D C+RVD+KKLNRR+LE L+ +G Sbjct: 838 DEGEIVYGIGAIKGVGEGPIKAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSG 897 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 A D G R L+ SL K A K ++F G +D + S N Sbjct: 898 AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANVP 953 Query: 948 ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y K I R G ++ T RG A +V++ Sbjct: 954 PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARIMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|332038321|gb|EGI74766.1| DNA polymerase III alpha subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 1163 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1064 (41%), Positives = 615/1064 (57%), Gaps = 70/1064 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS +S+++G I+ K Q PAIAITD N + F AGI Sbjct: 3 APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNFCGLVRFYGATHNAGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQG 125 +PI+G + ++P FP PS + +L +GY+ + L+S+ Y Sbjct: 63 KPIVGADFWV------------RSPEFPDEPSRLTILAKDNDGYKNITLLISKAYQRGHV 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E+ GLI+L+G G + +A N+ V E + +K+ F D Y+ Sbjct: 111 FHRPVIDREWLVELKA-GLIILSGAKDGDLGKALLKNNPTVIESVVSFYKQHFSDNYYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R +R + V+LA +LP+VATN +FL E++EAH++ +A+ + K Sbjct: 170 LVRTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKR 229 Query: 245 RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP R + + YLK +M +FSD+PEAL+NTVEIA+RC+ +Q+ LP + Sbjct: 230 RPKRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGSL--- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + E+ L + GLE RL + +Y +RL EL VI +M F GYFLIV Sbjct: 287 --KIEDFLVKVSQDGLEERLQFLFPDEEDRKVKRVEYDERLAIELGVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 405 DFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + R +EA D V L+++ + LEG R+A HA G+VI ++ Sbjct: 465 GDPGMTLA-KAFDVEPRLQEAYDGDNEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 +Y D PVTQF+ +E AGL+KFDFLGL+TLT+LQ ++D R + Sbjct: 524 DFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMKRQGKDP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD++ IP DD ++ LL T +FQLES GM+ + ++PDC ED+IALV+L+RPGP+ Sbjct: 584 VDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 + +V N +RK G+E+I S+ P++DP T G+I+YQEQVMQIAQ+L+G Sbjct: 644 QSGMVDNFIDRKLGREEISYPDAQYQHESLKPILDP----TYGIILYQEQVMQIAQVLAG 699 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM KQ+ F GA NGI +A+ IF+L+ KFA YGFNKS Sbjct: 700 YTLGGADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKS 759 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT WMKTH+P EF+AA M+ +MDN +KI + + ++PP VN Sbjct: 760 HSAAYALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAG 819 Query: 825 CVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882 F V + I Y + AIKGVG I+EA A PF L DFC+RVD K+LN+RV Sbjct: 820 EFKFTVNLEGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVT 879 Query: 883 ESLVFAGALDCFGYSRMQ-----LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 E L++AGALD G + Q LL SL + + A K ++F Sbjct: 880 EKLIYAGALDQLGPEKTQSGRATLLASLKDAMRAADQHNKAEQLGQSDLFGL-------- 931 Query: 938 ITLEKFSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 + E VE + ++ + E+ LG Y +GHP++ Y+ LR + Sbjct: 932 LATEPDEVEQAFIKATGLTDNEWLDGEKETLGLYLTGHPINQYRRELRHYTSGKIVDLQP 991 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T R A +V++ + +KG+R VT + + + + Sbjct: 992 TNRDVFATAAGLVIASRVLINKKGNRWALVTLDDKSARIDVRLY 1035 >gi|86146874|ref|ZP_01065193.1| DNA polymerase III subunit alpha [Vibrio sp. MED222] gi|218710303|ref|YP_002417924.1| DNA polymerase III subunit alpha [Vibrio splendidus LGP32] gi|85835326|gb|EAQ53465.1| DNA polymerase III subunit alpha [Vibrio sp. MED222] gi|218323322|emb|CAV19499.1| DNA polymerase III alpha subunit [Vibrio splendidus LGP32] Length = 1159 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1053 (40%), Positives = 622/1053 (59%), Gaps = 55/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A G++ Sbjct: 4 PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCGVK 63 Query: 69 PIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIG + D D L + ++ ++ +GY L L+S+ YL Sbjct: 64 PIIGADFLMQSPDFGDELT-------------KLTVIATSNKGYNNLTLLISKAYLRGHV 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + I WL E EGLI+L+G G I +A + ++ + +K F DR Y+ Sbjct: 111 QHQPVIDKEWLIE-HAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYLE 169 Query: 186 LQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 L R D ES + ++LA +LP+VATN +F+SE+ ++AH++ +A+ + Sbjct: 170 LIRTGRTDE--ESYLHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVD 227 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ +P YL++ EM +FSD+PEALEN+VEIA+RC+ +++ LP F + Sbjct: 228 PRRPKNYSPQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + +Y +RL EL V+ M F GYFL Sbjct: 287 ----AIEDFLIKKSEEGLERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL Sbjct: 403 DIDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 +P DP + +A+ + E D V L++ + LEG R+A HA G+VI Sbjct: 463 VPPDPGMTLEKAFLAEPA-LPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTT 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 522 ITDFAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLAKEGK 581 Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 V + IP DD +++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 DPVRIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E + H + L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 762 AAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLY 821 Query: 827 DFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E Sbjct: 822 RFNVDEDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEK 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLE 941 L+ +GALD G R ++ SL + K A + ++F G +D ++ + Sbjct: 882 LILSGALDRLGPHRAAMMASLKDAVKAASQHHHAESFGQSDMF----GVLTDAPEEVEHK 937 Query: 942 KFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 V V E E+ LG Y +GHP++ Y L K +++ T R ++ +A Sbjct: 938 YTQVPKWPEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAG 997 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG +T + + E F Sbjct: 998 LVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|332160607|ref|YP_004297184.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664837|gb|ADZ41481.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 1171 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1049 (40%), Positives = 618/1049 (58%), Gaps = 46/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A +AG++ Sbjct: 15 PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHSAGVK 74 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L +GYQ L L+S Y G Sbjct: 75 PIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGYGAAG 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + EGLI+L+GG G + + + E+ L +++ F D Y+ L R Sbjct: 125 PIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYLELIR 183 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA LP+VATN+ F+ E D++AH++ +A+ + RP+ Sbjct: 184 TGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPKRPK 243 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 244 NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----S 298 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL AQ Y +RL+ EL VI +M F GYFLIV +F Sbjct: 299 TEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEF 358 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 359 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 419 MEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 479 GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D+ Sbjct: 538 PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDI 597 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 598 ASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL AD Sbjct: 658 MVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 718 MLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 778 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVN 837 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L+ +G Sbjct: 838 DEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSG 897 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 A D G R L+ SL K A K ++F G +D + S N Sbjct: 898 AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANVP 953 Query: 948 ---SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y K I R G ++ T RG A +V++ Sbjct: 954 PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARIMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|256823112|ref|YP_003147075.1| DNA polymerase III subunit alpha [Kangiella koreensis DSM 16069] gi|256796651|gb|ACV27307.1| DNA polymerase III, alpha subunit [Kangiella koreensis DSM 16069] Length = 1161 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1040 (41%), Positives = 624/1040 (60%), Gaps = 45/1040 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL++H+ YS+++ + + ++ Q PAIA+TD N+ ++F ++ +AGI Sbjct: 2 TPRFIHLKMHTEYSMVDSVVRIKPLIATCKEHQIPAIAMTDQMNMCGLVKFYSQSVSAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G L I + N F + L GY L ++SR YL +Q + Sbjct: 62 KPIAGADLLI------QNPNDEDEHF----RVTALCMNNTGYLNLKYVISRAYLKNQHRG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL E EGLI+L+GG G + +A + A L + F DR Y+ LQ Sbjct: 112 LPLVKKEWLPEY-AEGLIILSGGRQGDVGKALLAGNMDQAASNLGFWNHHFKDRFYLELQ 170 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R + QV+ LA P+VATN+ F+ +ED++AH+ + + V++ RP Sbjct: 171 RTGRPQENEYIHQVIGLAQGASTPVVATNDVRFIDKEDFDAHEARVCINQGRVLADPRRP 230 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + YL++ EMV +F D+PEALEN+VEIA+RC+ +++ LP F E I + Sbjct: 231 REYSEQQYLRSEQEMVELFEDIPEALENSVEIAKRCNLEMRLGEYFLPEFPIPEGMTIAQ 290 Query: 306 EEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E ++ GLE RL Q A + Y +RL EL+VI M F GYFLIVA Sbjct: 291 YFEKVSKD----GLEERLDQLFDRNADDFAEIRKAYDERLQIELDVINDMGFPGYFLIVA 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQW+K N +PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 347 DFIQWSKNNGVPVGPGRGSGAGSLVAYAMKITDLDPLEYDLLFERFLNPERVSMPDFDVD 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RD VI YV +YG V+QIITFG++ AKA +RDVGR PY VD+L KLIP Sbjct: 407 FCMEGRDRVIDYVAERYGRNSVSQIITFGTMAAKAVIRDVGRVFSHPYGFVDKLAKLIPF 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A + D V L ++++KLEG+ R+A HA G+VI L + Sbjct: 467 EVGMTLE-KAFEQEPELPRLYEEDEDVRELWDLARKLEGVTRNAGKHAGGVVIAPNDLEE 525 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----FLAQRGVK-V 596 P+Y D VTQF+ +E AGL+KFDFLGL+TLT++ +++ +A++G + + Sbjct: 526 FAPLYCDETGHNIVTQFDKDDVESAGLVKFDFLGLRTLTIIDWAIETANGIIAKKGEEPI 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ I +D + + LL T +FQLES GM+ ++ ++P+ EDIIALV+L+RPGP+ Sbjct: 586 DITAIDTEDQQVFDLLQRADTTAVFQLESRGMKDLIKRLKPNRFEDIIALVALFRPGPLQ 645 Query: 657 NIVVYN--NRKNGKEKIVSI------HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N NRK+G+E IVS H + +L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 646 SGMVDNFINRKHGRE-IVSYPDANYQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM+KQ+ F GA KN + +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 705 GADILRRAMGKKKPEEMEKQRSIFKEGAIKNNVDGDLAMKIFDLVEKFAGYGFNKSHSAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++YQTAW+KTH+P F+AA M+ +MDN +K+ + +DA N+ I PP VN F Sbjct: 765 YALVAYQTAWLKTHHPAAFMAAVMSSDMDNTDKVVTYVEDAANSNLTITPPDVNKGQYRF 824 Query: 829 KVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V + RI Y + AIKGVG I+ E A+ P+ L DFCSRVD KK NRR LE+L+ Sbjct: 825 SVDEEGRIVYGIGAIKGVGEGAIESIVNEREANGPYKDLFDFCSRVDLKKANRRTLEALI 884 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK----ITLEK 942 AGA+D G +R L+ SLD K A+ K++ +++F T + + I ++ Sbjct: 885 RAGAMDLIGPNRATLMASLDEAVKAAEQFNKSQAAGQDDLFGSVVATTATEQHQYIRVKP 944 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 ++ E + E+ LG Y +GHP+D Y P +++M I T RGN+ R+ ++V Sbjct: 945 WTDEQV---LQGEKETLGLYLTGHPIDRYIPEIKQMSITRLRNLQPTGRGNSARVVGLIV 1001 Query: 1003 SKQQKKTRKGSRIGWVTFSE 1022 + T++G ++ +T + Sbjct: 1002 GMRVMNTKRGDKMAILTLDD 1021 >gi|15598836|ref|NP_252330.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAO1] gi|116051637|ref|YP_789524.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa UCBPP-PA14] gi|218890135|ref|YP_002438999.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa LESB58] gi|254242338|ref|ZP_04935660.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 2192] gi|296387855|ref|ZP_06877330.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAb1] gi|14194674|sp|Q9HXZ1|DPO3A_PSEAE RecName: Full=DNA polymerase III subunit alpha gi|9949800|gb|AAG07028.1|AE004784_1 DNA polymerase III, alpha chain [Pseudomonas aeruginosa PAO1] gi|13992731|gb|AAG16710.2| DNA polymerase III [Pseudomonas aeruginosa] gi|115586858|gb|ABJ12873.1| DNA polymerase III, alpha subunit [Pseudomonas aeruginosa UCBPP-PA14] gi|126195716|gb|EAZ59779.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 2192] gi|218770358|emb|CAW26123.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa LESB58] Length = 1173 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1064 (40%), Positives = 636/1064 (59%), Gaps = 63/1064 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ +SL++G + + + +A PA+A+TD +N+ S ++F + A AGI+P Sbjct: 4 SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I C DI + + + P + + LL A+GY+ L EL+SR + Q + Sbjct: 64 I--CGADIWLA-----SREEDGP---LSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W++E EGLI L+ G I A AE L + ++F +R YV +QR Sbjct: 114 IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R D V LA PLVATN+ F+ +ED+EAH+ + + + RPR Sbjct: 173 SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ +EM +FSDLPEALENTVEIA+RC+ +Q+ LP F I Sbjct: 233 YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ LR+ + GLE RL + + K Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DDYLRHASFEGLEERL-EVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 348 FIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV + YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 408 CMEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 467 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ +D + E++ KLEG+ R HA G+VI L+ Sbjct: 468 VGMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDF 526 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + A++G++ V+ Sbjct: 527 SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVN 586 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 587 IDFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 646 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 647 GMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGA 706 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ FI G NGI +A NIF+L+ KFA YGFNKSH+AAY Sbjct: 707 DMLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 766 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+KTH+P F+AA +T +M N +K+ ++ R ++I+ P VN F V Sbjct: 767 LVSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTV 826 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ RI Y L AIKGVG I E A+ PF++L DFC RVD K++N+R LE+L+ A Sbjct: 827 DDDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRA 886 Query: 889 GALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929 GALD G +R LL +++ + A+ ++ + H ++F Sbjct: 887 GALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAE 946 Query: 930 -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 E +++ +++ +++ R + E+ LG Y +GHP+D Y+ +R+ + E + Sbjct: 947 PEADVYANHRKVKELTLKE---RLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVE-LK 1002 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R +A ++V+ + K +KG ++G+VT + + EA+ F Sbjct: 1003 PARDTQT-VAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045 >gi|239993623|ref|ZP_04714147.1| DNA polymerase III subunit alpha [Alteromonas macleodii ATCC 27126] Length = 1154 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1045 (41%), Positives = 611/1045 (58%), Gaps = 39/1045 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F+HL+VHS +S+++G + IL K+AA PA+AITD N+ ++F +A GI Sbjct: 2 SSPFIHLRVHSDFSMMDGLNKVKPILGKVAALGMPAVAITDQMNMCGLVKFYSEAHNLGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQ--GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 +PIIG + +TN+ G PF + L+ EGY+ + L+S+ YL Sbjct: 62 KPIIGT--------DFWVTNEVFGDEPF----RLTLIAMNNEGYKNITILISKAYLRGHL 109 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E +EG+I L+G G + N++++ + L ++ F DR Y+ Sbjct: 110 SHRAVIDQEWLAE-HSEGVIALSGAQHGDVGVGLMKNNAKILDSALEFYQTHFPDRFYLE 168 Query: 186 LQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R +G + Y V+LA LP+VATN F+ E ++AH++ + + + Sbjct: 169 LIRTGRQGEEDYLH-LAVELAEQRGLPVVATNEVCFIDREGFDAHEIRVCIHDGYTLDDN 227 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R + YL+ EMV +FSD+PEA+ENTVEIA+RC+ ++++ LP+F Sbjct: 228 RRPKRYSDQQYLRTAEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPTGGM-- 285 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L + GLE RL + +Y RL EL VI +M F GYFLI Sbjct: 286 ---TTEDFLVKVSEEGLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 403 VDFCMDRRDEVIDHVAELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E +D V L+++++ LEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTLE-KAFKAEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++Q ++D + + + V VD+ Sbjct: 522 TDFSPLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGKNVDVDI 581 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S IP +D +++ L T +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + Sbjct: 582 SAIPLEDPKSFRTLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSG 641 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + +L+ T G+I+YQEQVMQIAQ ++GYSL AD Sbjct: 642 MVDNFIDRKHGREEISYPDAEYQHECLKEILEPTYGIILYQEQVMQIAQEMAGYSLGGAD 701 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA N I +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 702 LLRRAMGKKKPEEMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYAL 761 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SYQT W+K HYP EF+AA M+ +MDN +KI + + I+I+PP +NT F V Sbjct: 762 VSYQTLWLKVHYPAEFMAAVMSADMDNTDKIVTLVDECERMGIEILPPDLNTGKYKFTVD 821 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + RI Y + AIKGVG I+EA F L DFC+++D K++N+RVLE LV AG Sbjct: 822 SEGRIVYGIGAIKGVGEGPIEAIIEARETQGAFKDLFDFCAKIDIKRVNKRVLEKLVLAG 881 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948 A+D G R L+ SL A K + ++F D K Sbjct: 882 AMDNLGPHRASLMASLPEALAAAGQHAKAESFGQSDMFGLLTTEPEDVKQAFADVPEWPE 941 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 V E E+ LG Y +GHP++ Y LR + T + +V+ + Sbjct: 942 KVWLEGEKDTLGLYLTGHPINQYAEELRYYTDGRLVDLKPTNKDQMASAVGLVLGVRVMT 1001 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 ++G R VT + + + FFP Sbjct: 1002 NKRGRRWAIVTLDDKSARIDVRFFP 1026 >gi|238763963|ref|ZP_04624919.1| DNA polymerase III subunit alpha [Yersinia kristensenii ATCC 33638] gi|238697780|gb|EEP90541.1| DNA polymerase III subunit alpha [Yersinia kristensenii ATCC 33638] Length = 1171 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1055 (40%), Positives = 620/1055 (58%), Gaps = 47/1055 (4%) Query: 4 YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 YL+ + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 9 YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 69 HGAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQR 118 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 G I WL + EGLI+L+GG G + + + + L +++ F Sbjct: 119 GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHTQVDLCLEFYQEHFPGSY 177 Query: 183 YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ L R R + V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 178 YLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLV 237 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 238 DPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM 297 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 E+ L K+ GLE RL AQ +Y +RL+ EL VI +M F GYF Sbjct: 298 -----STEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYF 352 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPD Sbjct: 353 LIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 412 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K Sbjct: 413 FDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 472 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 473 LVPPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPT 531 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 532 KITDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTG 591 Query: 596 ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RP Sbjct: 592 LEPIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRP 651 Query: 653 GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGY Sbjct: 652 GPLQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 711 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL AD+LRRAMGKK EEM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH Sbjct: 712 SLGGADMLRRAMGKKNPEEMAKQRSIFEDGAKSQGVEGELAIKIFDLVEKFAGYGFNKSH 771 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 772 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGL 831 Query: 826 VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLE 883 F V D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE Sbjct: 832 YHFHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILE 891 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 L+ +GA D G R L+ SL K A K ++F G +D + Sbjct: 892 KLIMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQ 947 Query: 944 SVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRL 997 S N + + E+ LG Y +GHP+ Y K I R G ++ T RG Sbjct: 948 SYANVPPWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMA 1007 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +V++ + T++G+RIG T + + E F Sbjct: 1008 AGLVIASRVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|313109045|ref|ZP_07795017.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 39016] gi|310881519|gb|EFQ40113.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 39016] Length = 1185 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1064 (40%), Positives = 636/1064 (59%), Gaps = 63/1064 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ +SL++G + + + +A PA+A+TD +N+ S ++F + A AGI+P Sbjct: 16 SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 75 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I C DI + + + P + + LL A+GY+ L EL+SR + Q + Sbjct: 76 I--CGADIWLA-----SREEDGP---LSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 125 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W++E EGLI L+ G I A AE L + ++F +R YV +QR Sbjct: 126 IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 184 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R D V LA PLVATN+ F+ +ED+EAH+ + + + RPR Sbjct: 185 SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 244 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ +EM +FSDLPEALENTVEIA+RC+ +Q+ LP F I Sbjct: 245 YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 300 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ LR+ + GLE RL + + K Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 301 DDYLRHASFEGLEERL-EVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 359 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 360 FIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 419 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV + YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 420 CMEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 479 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ +D + E++ KLEG+ R HA G+VI L+ Sbjct: 480 VGMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDF 538 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + A++G++ V+ Sbjct: 539 SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVN 598 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 599 IDFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 658 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 659 GMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGA 718 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ FI G NGI +A NIF+L+ KFA YGFNKSH+AAY Sbjct: 719 DMLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 778 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+KTH+P F+AA +T +M N +K+ ++ R ++I+ P VN F V Sbjct: 779 LVSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTV 838 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ RI Y L AIKGVG I E A+ PF++L DFC RVD K++N+R LE+L+ A Sbjct: 839 DDDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRA 898 Query: 889 GALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929 GALD G +R LL +++ + A+ ++ + H ++F Sbjct: 899 GALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAE 958 Query: 930 -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 E +++ +++ +++ R + E+ LG Y +GHP+D Y+ +R+ + E + Sbjct: 959 PEADVYANHRKVKELTLKE---RLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVE-LK 1014 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R +A ++V+ + K +KG ++G+VT + + EA+ F Sbjct: 1015 PARDTQT-VAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1057 >gi|152999992|ref|YP_001365673.1| DNA polymerase III subunit alpha [Shewanella baltica OS185] gi|151364610|gb|ABS07610.1| DNA polymerase III, alpha subunit [Shewanella baltica OS185] Length = 1157 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1044 (40%), Positives = 614/1044 (58%), Gaps = 38/1044 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ +G+ + ++ ++ GYQ L +++S+ YL Q Sbjct: 64 PIIGA--DFWMQ---VPGFEGE-----LCALTIIAMNNVGYQNLTQIISQAYLRGQVAGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 V I WL EG+++L+G G + +A +S E ++ F DR ++ L R Sbjct: 114 VVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIR 172 Query: 189 HRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 D RY V+ LA +P+VATN +FL ED++AH++ +A+ ++ RP Sbjct: 173 TGRPDEERYLHMAVI-LAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRP 231 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + YL++ EM +F+D+P AL N+VEIA+RC+ ++++ LP F + Sbjct: 232 KKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM----- 286 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L + + GLE RL + +Y +RLD EL VI +M F GYFLIV + Sbjct: 287 SIEDFLVDCSRKGLEERLGFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP + Sbjct: 407 CMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPE 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A + +E+ D V L+++ +KLEG+ R+A HA G+VI ++ Sbjct: 467 PGMTLA-KAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + VK + Sbjct: 526 APLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPIR 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I D + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 586 IEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSGY+L A Sbjct: 646 GMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN F V Sbjct: 766 LVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTV 825 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ AG Sbjct: 826 DDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAG 885 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948 ALD G R ++ +L + A K ++F D K + + Sbjct: 886 ALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPD 945 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E E+ LG Y +GHP++ Y L+ ++ T RG + A +VV+ + Sbjct: 946 KIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVML 1005 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1006 TKRGSKMGLLTLDDKSARLEIMLF 1029 >gi|109897589|ref|YP_660844.1| DNA polymerase III, alpha subunit [Pseudoalteromonas atlantica T6c] gi|109699870|gb|ABG39790.1| DNA polymerase III, alpha subunit [Pseudoalteromonas atlantica T6c] Length = 1155 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1054 (40%), Positives = 628/1054 (59%), Gaps = 63/1054 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS YS+L+G + ++ + + PA+A+TD N+ ++F ++A + GI+PI Sbjct: 6 FVHLRVHSDYSMLDGLNKVKPLIAHVKSLNMPAVALTDQMNMCGLVKFYEQAHSNGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + D L+ V + LL + +GY+ + L+S+ YL + Sbjct: 66 IGTDFWV-QSDALE---------DHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAV 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188 I WL E +EG+I+L+GG G + + +AEK +++ F DR Y+ L R Sbjct: 116 IDQEWLVE-HSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQQHFPDRFYLELTRTG 174 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G + Y + V+ A H+LP+VATN F+S +++EAH++ +A+ ++ RP++ Sbjct: 175 RLGEEDYIH-RAVEWAGQHDLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKL 233 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDDIQ 304 + Y++ EM +F+D+P+A+ENTVEIA+RC+ + + LP F + D + Sbjct: 234 YSEQQYMRTSEEMCELFADIPQAIENTVEIAKRCNVSVLLGTYFLPDFPTGDMSIADFLV 293 Query: 305 KEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 K E GLE RLA + +AK +Y +RL EL VI +M F GYFL Sbjct: 294 KVSEE--------GLEKRLAFLFPDEEERLAK---RPEYDERLKIELVVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDRRDEVIDHVAEMYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP P ++ +A ++ R E D V L+++++ LEG+ R+A HA G+VI Sbjct: 463 IPPTPGMTLT-KAFEEEPRLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDK 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++Q ++D + A +GV +D Sbjct: 522 ITDFAPLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMISAGKGVDID 581 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD +++ LL T +FQLES GM+ ++ ++PD EDIIALV+L+RPGP+ + Sbjct: 582 ILAIPMDDKKSFKLLQRSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQS 641 Query: 658 IVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ +SGYSL A Sbjct: 642 GMVDNFIDRKHGREAISYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGA 701 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+E F +GA N I +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 702 DLLRRAMGKKKPEEMAKQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYA 761 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+KTHYP EF+AA M+ +MDN +KI + ++ I ++PP VN F V Sbjct: 762 LVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVTLVDECQRMGITLLPPDVNAGSYKFTV 821 Query: 831 -GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + RI Y + AIKGVG I+EA + + F L DFC++VD+K++N+RVLE LV+A Sbjct: 822 DSEGRIVYGIGAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYA 881 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD G R ++ +L A ++H AH + +T E VE + Sbjct: 882 GALDNLGPHRASIMATLPEAISAA--------DQHAKAEAHGQSDMFGLLTTEPEQVEQA 933 Query: 949 ---------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 V + E+ LG Y +GHP++ Y ++ + T + Sbjct: 934 FAKVPHWAEKVWLDGEKVTLGLYLTGHPINQYAQEIKHYCTGRLIDLKPTHKDVVSYAVG 993 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V+ + ++G R G VT + + + FFP Sbjct: 994 LVIGVRVMTNKRGRRWGIVTLDDKSARIDVRFFP 1027 >gi|70728573|ref|YP_258322.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens Pf-5] gi|68342872|gb|AAY90478.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Pf-5] Length = 1173 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1065 (40%), Positives = 620/1065 (58%), Gaps = 65/1065 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ +A PA+A+TD NN+ S ++F + + AGI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRIKPLVKALAGMGMPAVAVTDQNNMCSLVKFYKTSMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G +L ++N K P + I LLV A GY+ L EL+SR ++ Q + Sbjct: 64 ICGA--------DLWLSN--KDPDNPLSRISLLVMNAVGYRNLTELISRGFIDGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ E EGLIML+ G I A +VAE + +F +R Y+ +QR Sbjct: 114 IIEREWVAE-AAEGLIMLSAAKEGEIGMALIAGDLEVAETLAREWMAVFSERFYLEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D + V LA PLVATN+ F+ +ED+EAH+ + + + R + Sbjct: 173 NRPNDEEQLHAAVALADKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSKN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP + + I Sbjct: 233 YSDQQYLKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPDYPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RL+ + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E+++KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ HP + P+L T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 648 GMVDDFINRKHGRAELAYPHPDYQYDGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ FI G + N I +A NIF+L+ KFA YGFNKSH+AAY Sbjct: 708 DMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R +++ P VNT F V Sbjct: 768 LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRIMKLRLDAPDVNTSEFKFTV 827 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I EA PF L DFC+RVD K++N+R L+ L+ +G Sbjct: 828 NDEGRIVYGLGAIKGVGEGPVEAITEAREAGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887 Query: 890 ALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 ALD G +R LL +++ K A+ + + H ++F G F Sbjct: 888 ALDRLGPHFFDEPKAYQANIDQNRAVLLAAMEEAIKAAEQTARTHDSGHADLFG---GVF 944 Query: 935 SDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 D+ K R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 945 VDEDADVYANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFA----RQRIID 1000 Query: 990 IRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A M+++ + K +KG ++G++T + + EA+ F Sbjct: 1001 LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|238792741|ref|ZP_04636372.1| DNA polymerase III subunit alpha [Yersinia intermedia ATCC 29909] gi|238727849|gb|EEQ19372.1| DNA polymerase III subunit alpha [Yersinia intermedia ATCC 29909] Length = 1171 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1050 (40%), Positives = 616/1050 (58%), Gaps = 48/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A AGI+ Sbjct: 15 PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L EGYQ L L+S Y G Sbjct: 75 PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQ 187 I WL + EGLI+L+GG G + + F +Q + L F ++ F Y+ L Sbjct: 125 PIIDRDWLIK-HKEGLILLSGGRMGDVGK-FMLRGNQAQVDQCLEFYQEHFPGSYYLELI 182 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R + V LA LP+VATN+ F++E D++AH++ +A+ + RP Sbjct: 183 RTGRPDEENYLHAAVTLATERGLPVVATNDVRFIAESDFDAHEIRVAIHDGFTLVDPKRP 242 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F E Sbjct: 243 KNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGEM----- 297 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLIV + Sbjct: 298 STEDFLVEKSKQGLEERLEFLFPDPEVRVQKRPEYDERLDIELKVINQMGFPGYFLIVME 357 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 358 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 417 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P D Sbjct: 418 CMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPD 477 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 478 PGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 536 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + K +D Sbjct: 537 APLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINAKRAKTGLEPID 596 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 597 IASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQS 656 Query: 658 IVVYN--NRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL A Sbjct: 657 GMVDNFIDRKHGREALSYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGA 716 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 717 DMLRRAMGKKNPAEMAKQRSVFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYA 776 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 777 LVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPEINSGLYHFHV 836 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888 D I Y + AIKGVG I+EA + F L D C+RVD+KKLNRR+LE L+ + Sbjct: 837 NDEGEIVYGIGAIKGVGEAPIEAILEARKEGGHFKDLFDLCARVDTKKLNRRILEKLIMS 896 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947 GA D G R L+ SL K A K ++F G +D + S N Sbjct: 897 GAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMF----GVLADAPEQVEQSYANV 952 Query: 948 ----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + E+ LG Y +GHP+ Y K I R G + ++ T RG +V+ Sbjct: 953 PPWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVI 1012 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG T + + E F Sbjct: 1013 AARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|170727605|ref|YP_001761631.1| DNA polymerase III subunit alpha [Shewanella woodyi ATCC 51908] gi|169812952|gb|ACA87536.1| DNA polymerase III, alpha subunit [Shewanella woodyi ATCC 51908] Length = 1157 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1048 (40%), Positives = 620/1048 (59%), Gaps = 46/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSFVHL+VHS +S+ +G + I+ K++ PA+A+TD NL ++F + AGI+ Sbjct: 4 PSFVHLRVHSDFSMSDGLAKVKPIIGKVSELGMPAVALTDQTNLCGLVKFYEACHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P+IG + + K + ++ +L EGY+ L L+S YL Sbjct: 64 PLIGSDFWVKVPGFDK----------NLCAVTVLAMNNEGYKNLTLLISDAYLRGHIDDR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + +EG+I+L+GG G I +A + E + ++ F DR Y+ L R Sbjct: 114 AVIDHEWLAKY-SEGIILLSGGRQGDIGQALLKGNLPQVESLVEFYQTHFPDRYYLELLR 172 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D R + V+LA LP+VATN +F + E +EAH++ +A++ ++ RP+ Sbjct: 173 TGRPDEERYLHMAVELAEVKGLPVVATNQVVFNTPELFEAHEIRVAISDGFTLADPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + Y K+ +M +F D+PEA+ENTV+IA+RC+ +++ LP F E Sbjct: 233 KYSAEQYFKSSEQMCELFEDIPEAIENTVQIAKRCNVTVRLGEYFLPNFPTGEL-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L + GLE RL + Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 IEDFLVAVSEKGLEERLEFLFPDPEVRAEKRPKYDERLDVELKVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 348 IQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K++P +P Sbjct: 408 MDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + +E+ AD V L+++ + LEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEVEPALQESYDADEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + K V + Sbjct: 527 PIYCDAEGQNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALQMVNAKKDKLGEERVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 ESIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N RK+G+E + H + +L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIERKHGREAVSYPDSEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F G+ NG+ +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRGTFEEGSINNGVDGPLSMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+AA M+ +MDN +KI + + + ++PP VN + F V Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMEMPLLPPDVNKGLLKFNVD 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 D I Y + AIKGVG I+ A D PF L DFC+RVD KKLN+R++E L+ AGA Sbjct: 827 DEGNIVYGIGAIKGVGEGPVDSILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGA 886 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVENS 948 LD G R ++ +L + A ++ K E I H+ SD +++ VE + Sbjct: 887 LDTLGPHRAAMMATLPEAIRAA-----DQNAKAEAIGQHDMFGLLNSDPEDIKQQFVECT 941 Query: 949 ----SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ Sbjct: 942 PWPDKVWLEGERETLGLYLTGHPINQYLKELKHYTSCRLKDIHPTERGKTMKAAGLVVAT 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GS++G VT + + E F Sbjct: 1002 RVMMTKRGSKMGLVTLDDKSARLEVMLF 1029 >gi|85859457|ref|YP_461659.1| DNA polymerase III subunit alpha [Syntrophus aciditrophicus SB] gi|85722548|gb|ABC77491.1| DNA polymerase III alpha subunit [Syntrophus aciditrophicus SB] Length = 1155 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1048 (41%), Positives = 633/1048 (60%), Gaps = 40/1048 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K +FVHL VH+ YSLL+G + + +++ K A+A+TD N+F ++F Q AC G Sbjct: 2 KIETFVHLHVHTQYSLLDGTIRIKDLISKAKEFGMQAVAMTDHGNMFGTIDFYQAACKEG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PIIGC+L + + + T G + T +++L +GYQ L++L S YL D Sbjct: 62 IKPIIGCELYVAPKTRFEKT--GGSIGDTARHLLVLAKDYQGYQNLMKLSSLGYL-DGFY 118 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L++ +GLI L+ +G I + + A ++++FG+ + Sbjct: 119 YRPRVDKELLKKY-HKGLIALSACLNGEIANYILKDKFKDALLAAENYRQIFGEHNFYLE 177 Query: 187 QRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 G + + +++++ +P+ ATN+ +L+ ED E+H+VL+ + + D Sbjct: 178 IMENGLPEQKTANEGLLEISRQLSIPVAATNDCHYLNREDAESHEVLLCIQTGKTLDDSD 237 Query: 245 RPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + D Y ++ +M +F+ PEA+ENT EIA RC+ + LP+F E D+ Sbjct: 238 RMRFSTDAFYFRSPDDMKQLFNYCPEAVENTKEIADRCNLSFEFGKFYLPKF-EVSSDET 296 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L A+ GL R+ +G + Y +RL EL +I M F+GYFLIV+D Sbjct: 297 L---EDRLEKVAIQGLAERMPPIVDERGEEVRGIYEKRLADELKIIKSMGFAGYFLIVSD 353 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F+ +AK+ NIPVGPGRGS AGS+ AYALTITDIDP+R+ L FERFLNPDR+SMPD DIDF Sbjct: 354 FVSYAKRMNIPVGPGRGSAAGSLVAYALTITDIDPIRYDLFFERFLNPDRISMPDIDIDF 413 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + R ++IRYV KYG ++V+QIITFG +QA+A +RDVGRAL +PY +VD + KL+PN Sbjct: 414 CPEGRGDIIRYVTEKYGEDKVSQIITFGKMQARAVIRDVGRALNIPYGEVDSIAKLVPN- 472 Query: 483 PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 +SL A+ + R +EA D + +LL++S+ LEGL RHAS HAAG+VI D PL + Sbjct: 473 -ILNISLDDAMEMEPRLQEAAKRDEKIRKLLKLSKSLEGLNRHASVHAAGVVISDVPLVE 531 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600 VP+Y+ + D+ TQF+M + GL KFDFLGLKTLT+++ +L F+ + G +DL Sbjct: 532 RVPLYKSPKDDV-TTQFSMNDLSTVGLTKFDFLGLKTLTVIKNALSFIKEGLGTDLDLKN 590 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P +D +T+ LL+ T G+FQLES GM++ L M+PDCIED+IAL++LYRPGP++ I Sbjct: 591 LPLNDADTFKLLSKGETDGVFQLESDGMKEILVRMKPDCIEDLIALIALYRPGPMNMIPE 650 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK GK I+ ++ +LKET GVI+YQEQVMQIA +++ YS+SEAD LR+ MGKK Sbjct: 651 FIARKQGKTPIIYEIDQLEGILKETYGVILYQEQVMQIASVIAQYSMSEADTLRKVMGKK 710 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 +M+ ++ +F+ GA NGI + I+E + FA YGFNKSH+ AYA+++YQTA++K Sbjct: 711 DTAKMETERPKFMEGAKANGIPEQKTRKIWEQMETFASYGFNKSHSTAYAMVTYQTAYLK 770 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEF+AA +T E DN +KI K+ ++ I I+PP +N DF V NRI + LA Sbjct: 771 AHYPVEFMAALLTSEKDNRDKIIKYIHVCKEMGIAILPPDINESQRDFSVAGNRIRFGLA 830 Query: 841 AIKGVGTTTARHIMEASADK--PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIK VG A M +S K F S EDFC+R D KK+N+RVLESL+ GA D G R Sbjct: 831 AIKNVG-LGAIDAMISSRQKGGEFLSFEDFCNRTDLKKVNKRVLESLIKCGAFDSTGQRR 889 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR------- 951 QL+ +NI + +Q +K++ +K + F D EK S NSS Sbjct: 890 RQLMSEYENIIEISQKRQKDKASKQASFF----DDMEDLGVEEKRSYANSSAAEIQEWDP 945 Query: 952 ---FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQ 1005 +E+ LGFY +GHPL+ Y K+ + +S + + + LA +V + Sbjct: 946 KELLAHEKEFLGFYVTGHPLEGYAS---KISMVANTDSAGILEKGDKEPVSLAGIVSGIR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + TRK + +V+ + + FFP Sbjct: 1003 EVFTRKKEIMAYVSLEDLKGATDVIFFP 1030 >gi|300114836|ref|YP_003761411.1| DNA polymerase III subunit alpha [Nitrosococcus watsonii C-113] gi|299540773|gb|ADJ29090.1| DNA polymerase III, alpha subunit [Nitrosococcus watsonii C-113] Length = 1158 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1054 (42%), Positives = 630/1054 (59%), Gaps = 54/1054 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +PSFVHL++H+ YSL++ + + ++ PAIA+TD +N+F+ ++F + A AAG+ Sbjct: 2 APSFVHLRLHTEYSLVDSLVRIRPLIQATREAGMPAIAVTDQSNVFAMIKFYRAAQAAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG + + G LL GY+ L L+SR Y Q + Sbjct: 62 KPIIGADIFL----------AGSGERSRASRFTLLCQNELGYRHLSGLLSRAYREGQYQG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ WLQ + +GLI+L+GG G + +A + A + L ++ LF R Y+ L Sbjct: 112 IPRLQWDWLQNL-NDGLIVLSGGREGDVGQALLSGNDIQAGRLLERWQALFPGRYYLELH 170 Query: 188 R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R G + Y + V ++ P+VATN+ FL +D+EAH+ + + ++ R Sbjct: 171 RTGREGEEDYLHAAVALAL-AYDTPVVATNDVRFLRPQDFEAHEARVCIHEGRALNDPRR 229 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R + YL+ SEM +F DLPEALENTVEIARRC+ L + LP F E I Sbjct: 230 SRHYSEQQYLRTPSEMAELFVDLPEALENTVEIARRCNLELTLGKYYLPNFPVPEDWSI- 288 Query: 305 KEEENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E L +A GLE RLA+ + Y RL EL VI +M F GYFLIVA Sbjct: 289 ---EAFLAAEARQGLEQRLAKLYPLETERKAEQSAYEARLAEELAVINQMGFPGYFLIVA 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F L+FERFLNP+R+S+PDFDID Sbjct: 346 DFIRWAKKNEIPVGPGRGSGAGSLVAYALQITDLDPLAFDLIFERFLNPERVSLPDFDID 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RRD VI YV YG + V+QIIT+G++ AKA +RDVGR L PY VD++ KLIP Sbjct: 406 FCMERRDWVIDYVSQHYGRDHVSQIITYGTMAAKAVVRDVGRVLGHPYGFVDQIAKLIPF 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 D + +A+A+ R + V L+++++KLEGL R+A HA G+VI + L++ Sbjct: 466 DLKMTLD-KALAESEGLRSRYEGEEEVQFLVDLARKLEGLIRNAGKHAGGVVIAPKKLTE 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRG-VKV 596 VP Y + + VTQF+ IE GL+KFDFLGL+TLT+L +L + Q+G + Sbjct: 525 YVPYYCEQGASGVVTQFDKDDIETIGLVKFDFLGLRTLTILDWALQAINRQRTQQGETLL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL+L+P DD ++Y LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 DLALLPMDDSKSYGLLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V Y NRK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L EAD+LR Sbjct: 645 SGMVDDYINRKHGRAQVDYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGEADLLR 704 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ+ F +GA + + A IF+L+ KFA+YGFNKSH+AAYAVI+Y Sbjct: 705 RAMGKKKPEEMAKQRAIFTAGAKAREVDEKKATAIFDLMEKFAEYGFNKSHSAAYAVIAY 764 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833 QTA++K HYP ++AA ++ +MDN +K+K F ++ + ++PP VN F G+ Sbjct: 765 QTAYLKAHYPASYMAAVLSADMDNTDKVKAFVEECWAMKLDLLPPDVNASNYLFSAQGET 824 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG I++A + +L +FC R+D +K++RRVLE+LV AGALD Sbjct: 825 AIRYGLGAIKGVGAAALEGIIKAREQHGLYQNLFEFCRRIDLRKISRRVLEALVRAGALD 884 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-------HEKGTFSDKITLEKFSV 945 G +R L SL+ A+ +N + ++F E G++ + +++ Sbjct: 885 SLGANRATLEASLEAALALAEQHCRNASLGQNDLFGLDLVSEDKEAGSY---VETKEWDE 941 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-------IRLA 998 E R E+ LG Y SGHP+D YK L+++ E + R NN I +A Sbjct: 942 EQ---RLALEKETLGLYLSGHPIDCYKQELKQIAPCRIAELID--RANNRQNRSQQIMIA 996 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V S + K R+G R ++T + + E F Sbjct: 997 GLVGSVRTNKARQGGRNAFITLEDGSARLEIKAF 1030 >gi|66044606|ref|YP_234447.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae B728a] gi|63255313|gb|AAY36409.1| DNA polymerase III alpha subunit [Pseudomonas syringae pv. syringae B728a] Length = 1173 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1067 (39%), Positives = 624/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++R + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|323495347|ref|ZP_08100425.1| DNA polymerase III subunit alpha [Vibrio brasiliensis LMG 20546] gi|323310418|gb|EGA63604.1| DNA polymerase III subunit alpha [Vibrio brasiliensis LMG 20546] Length = 1159 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1048 (40%), Positives = 619/1048 (59%), Gaps = 45/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHGCGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + + ++ + + +L + GY+ L L+S+ YL + Sbjct: 64 PIIGA--DFLMQ-SAEFGDE-------LTKLTVLAADNTGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ +EG+I+L+GG SG I +A + +V + ++ F DR Y+ L R Sbjct: 114 PVIDKEWLVEL-SEGVILLSGGKSGEIGKALLKGNHKVVSDCVEFYQTHFPDRFYLELTR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + ++LA ELP+VATN+ + L E ++AH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALELAEQAELPVVATNDVVILDESLFDAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ + YL++ EM +FSD+PEALEN+VEIA+RC+ +++ LP F + Sbjct: 231 PKNYSAQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 EE L K+ GLE RL + +Y +RL EL VI M F GYFLIV Sbjct: 287 -EETEFLVMKSEEGLEERLEFLFPDPKVREERRPEYDERLKVELEVINNMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L + VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + E D + L+++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLE-KAFKAEPALPELYENDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R V Sbjct: 525 FAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD +++LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 AIESIPLDDLASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E I H + L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 645 SGMVDNFIDRKHGREAISYPDETWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYRFN 824 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L++ Sbjct: 825 VDETGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIY 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFS 944 AGALD G R ++ SL + K A + ++F K T K Sbjct: 885 AGALDRLGPHRAAMMASLADAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYT--KVE 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTIAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|330964158|gb|EGH64418.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. actinidiae str. M302091] Length = 1173 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1067 (39%), Positives = 623/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + +F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPAEADELLREWLTVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+++ D+EAH+ + + + R Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA G + Y Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLMPGDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E+++KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEAPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSYDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|160874613|ref|YP_001553929.1| DNA polymerase III subunit alpha [Shewanella baltica OS195] gi|160860135|gb|ABX48669.1| DNA polymerase III, alpha subunit [Shewanella baltica OS195] gi|315266854|gb|ADT93707.1| DNA polymerase III, alpha subunit [Shewanella baltica OS678] Length = 1157 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1044 (40%), Positives = 614/1044 (58%), Gaps = 38/1044 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ +G+ + ++ ++ GYQ L +++S+ YL Q Sbjct: 64 PIIGA--DFWMQ---VPGFEGE-----LCALTIIAMNNVGYQNLTQIISQAYLRGQVAGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 V I WL EG+++L+G G + +A +S E ++ F DR ++ L R Sbjct: 114 VVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIR 172 Query: 189 HRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 D RY V+ LA +P+VATN +FL ED++AH++ +A+ ++ RP Sbjct: 173 TGRPDEERYLHMAVI-LAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRP 231 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + YL++ EM +F+D+P AL N+VEIA+RC+ ++++ LP F + Sbjct: 232 KKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM----- 286 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L + + GLE RL + +Y +RLD EL VI +M F GYFLIV + Sbjct: 287 SIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP + Sbjct: 407 CMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPE 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A + +E+ D V L+++ +KLEG+ R+A HA G+VI ++ Sbjct: 467 PGMTLA-KAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + VK + Sbjct: 526 APLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGREPIR 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I D + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 586 IEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSGY+L A Sbjct: 646 GMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN F V Sbjct: 766 LVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTV 825 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ AG Sbjct: 826 DDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAG 885 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948 ALD G R ++ +L + A K ++F D K + + Sbjct: 886 ALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPD 945 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E E+ LG Y +GHP++ Y L+ ++ T RG + A +VV+ + Sbjct: 946 KIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVML 1005 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1006 TKRGSKMGLLTLDDKSARLEIMLF 1029 >gi|161504650|ref|YP_001571762.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865997|gb|ABX22620.1| hypothetical protein SARI_02771 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1144 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1040 (40%), Positives = 621/1040 (59%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K A+ PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVH--- 57 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 N + ++ + + +L S GYQ L L+S+ Y G + WL E+ Sbjct: 58 NELLGDE-------LTHLTVLASDNTGYQNLTLLISKAYQRGYGASGPIVDRDWLIEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R + + E+ + ++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ FL +D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSIDE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALENTVEIA+RC+ +++ LP+F + E+ L K+ GL Sbjct: 230 MCELFADIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLNIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I++A + F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL + K A K ++F G ++ E +E S + + Sbjct: 884 NSLGDALKAADQHAKAEAIGQTDMF----GVLAE----EPEQIEQSYASCQPWPEQMVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP++ Y K I R +G ++ T RG A +V++ + T++G Sbjct: 936 GERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + E F Sbjct: 996 NRIGICTLDDRSGRLEVMLF 1015 >gi|126173703|ref|YP_001049852.1| DNA polymerase III subunit alpha [Shewanella baltica OS155] gi|125996908|gb|ABN60983.1| DNA polymerase III, alpha subunit [Shewanella baltica OS155] Length = 1157 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1044 (40%), Positives = 614/1044 (58%), Gaps = 38/1044 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F AG++ Sbjct: 4 PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ +G+ + ++ ++ GYQ L +++S+ YL Q Sbjct: 64 PIIGA--DFWMQ---VPGFEGE-----LCALTIIAMNNVGYQNLTQIISQAYLRGQVAGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 V I WL EG+++L+G G + +A +S E ++ F DR ++ L R Sbjct: 114 VVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIR 172 Query: 189 HRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 D RY V+ LA +P+VATN +FL ED++AH++ +A+ ++ RP Sbjct: 173 TGRPDEERYLHMAVI-LAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRP 231 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + YL++ EM +F+D+P AL N+VEIA+RC+ ++++ LP F + Sbjct: 232 KKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM----- 286 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L + + GLE RL + +Y +RLD EL VI +M F GYFLIV + Sbjct: 287 SIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP + Sbjct: 407 CMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPE 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A + +E+ D V L+++ +KLEG+ R+A HA G+VI ++ Sbjct: 467 PGMTLA-KAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + VK + Sbjct: 526 APLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPIR 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I D + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 586 IEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSGY+L A Sbjct: 646 GMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DMLRRAMGKKKHEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN F V Sbjct: 766 LVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTV 825 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ AG Sbjct: 826 DDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAG 885 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948 ALD G R ++ +L + A K ++F D K + + Sbjct: 886 ALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPD 945 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E E+ LG Y +GHP++ Y L+ ++ T RG + A +VV+ + Sbjct: 946 KIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVML 1005 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1006 TKRGSKMGLLTLDDKSARLEIMLF 1029 >gi|254236554|ref|ZP_04929877.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa C3719] gi|126168485|gb|EAZ53996.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa C3719] Length = 1173 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1064 (40%), Positives = 636/1064 (59%), Gaps = 63/1064 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ +SL++G + + + +A PA+A+TD +N+ S ++F + A AGI+P Sbjct: 4 SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I C DI + + + P + + LL A+GY+ L EL+SR + Q + Sbjct: 64 I--CGADIWLA-----SREEDGP---LSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W++E EGLI L+ G I A AE L + ++F +R YV +QR Sbjct: 114 IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R D V LA PLVATN+ F+ ++D+EAH+ + + + RPR Sbjct: 173 SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRT 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ +EM +FSDLPEALENTVEIA+RC+ +Q+ LP F I Sbjct: 233 YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ LR+ + GLE RL + + K Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DDYLRHASFEGLEERL-EVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 348 FIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV + YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 408 CMEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 467 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ +D + E++ KLEG+ R HA G+VI L+ Sbjct: 468 VGMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDF 526 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + A++G++ V+ Sbjct: 527 SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVN 586 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 587 IDFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 646 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 647 GMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGA 706 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ FI G NGI +A NIF+L+ KFA YGFNKSH+AAY Sbjct: 707 DMLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 766 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+KTH+P F+AA +T +M N +K+ ++ R ++I+ P VN F V Sbjct: 767 LVSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTV 826 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ RI Y L AIKGVG I E A+ PF++L DFC RVD K++N+R LE+L+ A Sbjct: 827 DDDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRA 886 Query: 889 GALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929 GALD G +R LL +++ + A+ ++ + H ++F Sbjct: 887 GALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAE 946 Query: 930 -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 E +++ +++ +++ R + E+ LG Y +GHP+D Y+ +R+ + E + Sbjct: 947 PEADVYANHRKVKELTLKE---RLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVE-LK 1002 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R +A ++V+ + K +KG ++G+VT + + EA+ F Sbjct: 1003 PARDTQT-VAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045 >gi|153829941|ref|ZP_01982608.1| DNA polymerase III subunit alpha [Vibrio cholerae 623-39] gi|262161397|ref|ZP_06030507.1| DNA polymerase III alpha subunit [Vibrio cholerae INDRE 91/1] gi|148874576|gb|EDL72711.1| DNA polymerase III subunit alpha [Vibrio cholerae 623-39] gi|262028708|gb|EEY47362.1| DNA polymerase III alpha subunit [Vibrio cholerae INDRE 91/1] Length = 1143 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1037 (41%), Positives = 617/1037 (59%), Gaps = 49/1037 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + ++ K+AA PA+A+TD NL ++F A G++PIIG Sbjct: 1 MVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADF------ 54 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 T Q + + + LL GY+ L L+S+ YL + I +WL E Sbjct: 55 ----TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HA 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV- 200 EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R D ES + Sbjct: 110 EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE--ESYLH 167 Query: 201 --VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNR 257 + +A ++LP+VATN +F++EE +EAH++ +A+ + RP+ +P YL++ Sbjct: 168 FALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSE 227 Query: 258 SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317 +EM +F+D+PEAL N+VEIA+RC+ +++ LP F E+ L K+ Sbjct: 228 AEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGM-----AIEDFLVMKSRE 282 Query: 318 GLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374 GLE RL + +Y +RL EL+VI +M F GYFLIV +FIQW+K N+IPV Sbjct: 283 GLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 342 Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434 GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V Sbjct: 343 GPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHV 402 Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494 YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP + IA+ Sbjct: 403 AEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAE 462 Query: 495 DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554 + +E AD V L++ + LEG R+A HA G+VI ++ P+Y D + P Sbjct: 463 PA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFP 521 Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETY 609 VTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V + IP DD ++ Sbjct: 522 VTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSF 581 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNG 667 L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V N +RK+G Sbjct: 582 RNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHG 641 Query: 668 KEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 +E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK Sbjct: 642 REAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 701 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTH Sbjct: 702 EEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTH 761 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAA 841 YP EF+AA MT +MDN EK+ + + + ++PP +N+ F V DN I Y + A Sbjct: 762 YPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGA 821 Query: 842 IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ AGALD G R Sbjct: 822 IKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAA 881 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVEN--SSVRFENE 955 ++ S+D+ + A + ++F G +D ++ + V VR E E Sbjct: 882 MMASVDDAVRAASQHHQAEAFGQADMF----GVLTDAPEEVEQKYTQVPEWPEKVRLEGE 937 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LG Y +GHP+D Y L K E+ T R ++ +A +V++ + T++G+RI Sbjct: 938 RETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRI 997 Query: 1016 GWVTFSEPAKEYEANFF 1032 G +T + + E + Sbjct: 998 GLMTLDDRSGRMEVMLY 1014 >gi|206890698|ref|YP_002248167.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742636|gb|ACI21693.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 1135 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1046 (40%), Positives = 633/1046 (60%), Gaps = 58/1046 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA+ +N ++++ PA+AITD NLF +EF +KA AG++PI Sbjct: 6 FVHLHIHTEYSLLDGAIKINELIEQAKKYNMPAVAITDHGNLFGVVEFFKKANKAGVKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTP-FPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IGC++ + Q T K P P S + LLV EGY+ L LV+R YL + Sbjct: 66 IGCEVYVAPQSRFDKTKINKDPGMPEEASFHLTLLVENEEGYKNLTRLVTRSYL-EGFYY 124 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI + L + +GL+ L+G G I + + + AE T K +FG+ ++ +Q Sbjct: 125 KPRIDMELLS-MYNKGLLALSGCLKGEIPYNIVYENIERAENTAKTLKDIFGNNFFLEIQ 183 Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + ++ ++ +++L+ ++P+VATN+ +L + D AH++L+ + + + R Sbjct: 184 SNSLPEQTIANRGLIELSKKFDIPVVATNDCHYLHKSDARAHEILLCIQTGKTIKDEKRL 243 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + D Y K+ EM S F ++PEAL+NT++IA RC+F L++ LP++ + Sbjct: 244 KFQSDEFYFKSPEEMYSAFVEIPEALKNTLQIAERCNFKLRLGEHKLPKYNVPQ----GY 299 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E L+ A GL+ R KG A+DY +RL+ EL VI M F+ YFLIV DFI Sbjct: 300 TAEEYLKKLAQEGLKERF------KGNVAEDYIKRLEEELKVITEMGFASYFLIVWDFIN 353 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++ +IPVGPGRGS AGS+ AYAL ITDIDP+++ LLFERFLNP+R+S+PD D+DFC+D Sbjct: 354 YARRKSIPVGPGRGSAAGSLVAYALKITDIDPIKYGLLFERFLNPERISLPDIDVDFCKD 413 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+YV YG +RVA IITFG++ A+A +RDVGRAL +PY+ VD++ K+IP A Sbjct: 414 RREEVIQYVAENYGKDRVAHIITFGTMAARAVVRDVGRALNIPYADVDKIAKMIPF--AC 471 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 P +A+ + R +E + +V L++I+ +LEGL RHAS HAAG+VI PL L+P+ Sbjct: 472 PSLEEALNLEPRLKELYNKNETVKELIDIALRLEGLARHASQHAAGVVISPEPLEDLMPL 531 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 Y++ + ++QF+MK +E GL+KFDFLGLKTLT++ ++ ++ +G +DL+ IP DD Sbjct: 532 YKNSGEETVISQFDMKALEDVGLLKFDFLGLKTLTVIDDTIKYVKAQGKDIDLNNIPLDD 591 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 ETY LL++ T G+FQLES GM++ L+ M+P ED+IALV+LYRPGP+ + +V + Sbjct: 592 SETYRLLSSGQTTGVFQLESRGMKELLKRMEPQRFEDLIALVALYRPGPLGSGMVDDFIK 651 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK G + P + +L ET GVI+YQEQVM+IA ++G+++ +ADVLR+AMGKKI E Sbjct: 652 RKKGLVPVEYELPELKDILDETYGVILYQEQVMKIANKIAGFTMGQADVLRKAMGKKIPE 711 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M KE FI GA KNGI A ++F ++A F +YGFNKSH+AAYA ++Y TA++K HY Sbjct: 712 LMASLKEEFIQGAQKNGIPYEKAESLFNIMAAFGEYGFNKSHSAAYAYLAYITAYLKAHY 771 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P EF AA+++ EM + KI KF + + + I+I P +N F V + I + L A+K Sbjct: 772 PQEFFAANLSNEMGDTNKIVKFINECKAWGIEIKGPDINESDRAFTVKEKFIRFGLEAVK 831 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + + I+ K F S++DF +R+D++K+N++V+ESL+ AGA D Sbjct: 832 GVGGSALQCILNEREKKKFTSIDDFLTRLDTRKVNKKVIESLIKAGAFDSL--------- 882 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDK---ITLEKFSVENSSVRFENEQ 956 Y Q+ N+ I HE KG S + T E +++ E+ Sbjct: 883 -------YPQYT----PNQARAIAMHELLSFKGVKSSRGLFFTHENIEAWDNNTVLSEEK 931 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT----IRGNN-----IRLAAMVVSKQQK 1007 LGFY +GHP+ +P+L K+ + + T NN I++A +V + K Sbjct: 932 SSLGFYLTGHPMKPLRPVLNKINVSTIADIFDTDEDDFVNNNEETHEIKIAGIVEEIKSK 991 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 KG ++T + E +P Sbjct: 992 AKEKGV-TAYITIEDETGRVEVVIYP 1016 >gi|254428613|ref|ZP_05042320.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax sp. DG881] gi|196194782|gb|EDX89741.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax sp. DG881] Length = 1166 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1051 (40%), Positives = 618/1051 (58%), Gaps = 40/1051 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++H+ YSL++G + + ++ Q PA+A+TD +NLF+ ++F Q A AGI+ Sbjct: 4 PRFVHLRLHTDYSLVDGVVRVKELIKTCVNQQIPAVAVTDDSNLFALIKFYQNAMNAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P++G L + QG T + LV GYQ L L+SR + +Q + Sbjct: 64 PLMGADLWV----------QG-THIEEPACLSFLVLNEAGYQNLTLLISRAWQTNQDRGR 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + W+ E+ EGLI+L+ S G + + ++A++ ++GDR Y+ +QR Sbjct: 113 ALVKPEWVAEL-NEGLIVLSAASQGEVGQLLLAEKYELAQQYASWLASVYGDRFYLEVQR 171 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D V LA LP+VATN+ FL ED+EAH+ + + + RP+ Sbjct: 172 TSRPGDEDCLHASVTLAGQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDPRRPK 231 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + YLK+ EM +F+DLPEALENTVEIARRC+ +++ LP F + I++ Sbjct: 232 KYSEEQYLKSAEEMAELFADLPEALENTVEIARRCTLDIRLGENFLPDFPIPDGMTIEQY 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E + L+V L + +DY RL FEL++I +M F GYFLIVADFIQW Sbjct: 292 FEKVSSDGLEERLKVLLDKDDPEYAIKRKDYDDRLRFELDIINQMGFPGYFLIVADFIQW 351 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 K N +PVGPGRGSGAGS+ AYA+ ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC ++ Sbjct: 352 GKDNEVPVGPGRGSGAGSLVAYAMKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEK 411 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI YV +KYG + V+QIITFG++ AKA +RDV R PY DRL K+IP P Sbjct: 412 RDRVINYVADKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGIPGMT 471 Query: 487 VSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 ++ +A+ + RE +D + D+ ++E++ KLEGL R+ HA G+VI L+ Sbjct: 472 LT-KALEQEETLREFLESDENSDKDAANEIMEMAFKLEGLTRNVGKHAGGVVIAPGKLTD 530 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDL 598 P+Y + VTQ++ +E AGL+KFDFLGLKTLT++ K+ + R DL Sbjct: 531 FAPLYCEEDGTNLVTQYDKDDVESAGLVKFDFLGLKTLTIIDWAVKAANVKRGREGLDDL 590 Query: 599 SL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ LL T +FQLES GM++ ++ +QPD EDIIALV+LYRPGP++ Sbjct: 591 VIDHIPLDDGPSFDLLKRGDTTAVFQLESQGMKELIKKLQPDVFEDIIALVALYRPGPLE 650 Query: 657 NIVVYN--NRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N NRK+G+E + P ++P+LK + GVI+YQEQVMQIAQ L+GY+L Sbjct: 651 SGMVDNFVNRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELAGYTLGG 710 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 711 ADMLRRAMGKKKPEEMAKQRAIFEEGAKGKGVDPDLAMKIFDLVEKFAGYGFNKSHSAAY 770 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++YQTAW+K HYP EF+AA+++ +M N +K+ F + + +Q++PP VN+ F Sbjct: 771 ALVAYQTAWLKVHYPAEFMAATISADMQNTDKVVTFIDECKTMGLQVLPPDVNSCGYRFT 830 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I Y L AIKG+G I+ A AD F L DFC R+D KK+NRR LE++V Sbjct: 831 VNPEGDIVYGLGAIKGLGEGPIDAIVSARADGGEFKDLFDFCRRIDLKKINRRSLEAMVR 890 Query: 888 AGALDCFG-----YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 AG LD G + R QLL +L + A +N ++F + + + + Sbjct: 891 AGVLDKLGPKSSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAVDDSPATAVEWKP 950 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 N R E+ LG + +GHP+D Y+ +R+ T +G +A +VV Sbjct: 951 ARAWNDETRLNGERDTLGLFLTGHPIDQYEKEVRQFVTARINSLQPTGKGEAATIAGLVV 1010 Query: 1003 S-KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + + R G R+ ++T + E + F Sbjct: 1011 ALRITRSKRSGDRMAFITLDDKTGRVEVSVF 1041 >gi|304409577|ref|ZP_07391197.1| DNA polymerase III, alpha subunit [Shewanella baltica OS183] gi|307303935|ref|ZP_07583688.1| DNA polymerase III, alpha subunit [Shewanella baltica BA175] gi|304352095|gb|EFM16493.1| DNA polymerase III, alpha subunit [Shewanella baltica OS183] gi|306912833|gb|EFN43256.1| DNA polymerase III, alpha subunit [Shewanella baltica BA175] Length = 1157 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1044 (40%), Positives = 614/1044 (58%), Gaps = 38/1044 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ +G+ + ++ ++ GYQ L +++S+ YL Q Sbjct: 64 PIIGA--DFWMQ---VPGFEGE-----LCALTIIAMNNIGYQNLTQIISQAYLRGQVAGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 V I WL EG+++L+G G + +A +S E ++ F DR ++ L R Sbjct: 114 VVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIR 172 Query: 189 HRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 D RY V+ LA +P+VATN +FL ED++AH++ +A+ ++ RP Sbjct: 173 TGRPDEERYLHMAVI-LAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRP 231 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + YL++ EM +F+D+P AL N+VEIA+RC+ ++++ LP F + Sbjct: 232 KKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM----- 286 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L + + GLE RL + +Y +RLD EL VI +M F GYFLIV + Sbjct: 287 SIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP + Sbjct: 407 CMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPE 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A + +E+ D V L+++ +KLEG+ R+A HA G+VI ++ Sbjct: 467 PGMTLA-KAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + VK + Sbjct: 526 APLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPIR 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I D + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 586 IEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSGY+L A Sbjct: 646 GMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN F V Sbjct: 766 LVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTV 825 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ AG Sbjct: 826 DDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAG 885 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948 ALD G R ++ +L + A K ++F D K + + Sbjct: 886 ALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPD 945 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E E+ LG Y +GHP++ Y L+ ++ T RG + A +VV+ + Sbjct: 946 KIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVML 1005 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1006 TKRGSKMGLLTLDDKSARLEIMLF 1029 >gi|88857962|ref|ZP_01132604.1| DNA polymerase III subunit alpha [Pseudoalteromonas tunicata D2] gi|88819579|gb|EAR29392.1| DNA polymerase III subunit alpha [Pseudoalteromonas tunicata D2] Length = 1163 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1056 (40%), Positives = 620/1056 (58%), Gaps = 54/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSFVHL+VHS +S+++G I+ K A PA+AI+D NL + F AGI+ Sbjct: 4 PSFVHLRVHSDFSMVDGLAKTKKIVAKAAEYAMPALAISDQMNLCGLVRFYDGCHYAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PI+ + + D FP + + ++ +GY+ L L+S+ YL Sbjct: 64 PIVAADIWLLSPD-----------FPDEMCRLTVIAKNNQGYKNLTLLISKAYLRGHVMH 112 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL E+ EGLI+L+G G + +A + + + +++ F D ++ L Sbjct: 113 RPMVDRDWLVEL-KEGLILLSGAKDGDLGKALLKGNPSLIDSVSGFYQREFADHYFLELV 171 Query: 188 RHRGYDRYRESQVVQLAYTHE----LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 R +R +E + + LA H +P+VATN +FL +ED+E H++ +A+ + Sbjct: 172 RT---ERPQEEEYLHLAVAHSYQTGIPVVATNEVVFLHKEDFEPHEIRVAIHDGYTLDDN 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R + Y K ++M +FSD+PEAL N+VEIA+RC+ +Q+ LP + + Sbjct: 229 RRPKRYSEQQYFKTEAQMCEVFSDIPEALANSVEIAKRCNVTIQLGTYFLPDYPTGKL-- 286 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L + GLE RL + + ++Y +RL EL+VI +M F GYFLI Sbjct: 287 ---TIEDFLVKVSEDGLEERLQILFPDPVKRVEQRKEYDERLKIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VD++ KLI Sbjct: 404 IDFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDKISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP ++ +A + R E D V L++ + LEG R+A HA G+VI + Sbjct: 464 PGDPGMTLA-KAFEVEPRLPEIYDTDDEVKELIDKCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF----LAQRGVK 595 + +Y D PVTQF+ +E AGL+KFDFLGL+TLT+LQ ++ LA+ G + Sbjct: 523 TDFAAIYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVQMANTRLAREGKE 582 Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++LIP DD +++ LL T +FQLES GM+ + ++PDC ED+IALV+L+RPGP Sbjct: 583 SIDITLIPLDDPKSFELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAQYQHESLAPILEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F SGA N + +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSTFESGAIGNNVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKTH+P EF+AA M+ +MDN +KI + + ++PP VN Sbjct: 763 AYALVSYQTLWMKTHFPAEFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNFGEYK 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + PF L DFC+RVD K++NRRV E L Sbjct: 823 FTVNLDGAIVYGIGAIKGVGEAPVDAILEARQSGGPFRDLFDFCARVDLKRVNRRVAEKL 882 Query: 886 VFAGALDCFGYSRMQ-----LLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDK 937 + AGALD G ++Q L+ +L + K A+ K ++F A E Sbjct: 883 IMAGALDNLGPKKVQGARSILIATLKDAMKSAEQHHKAAAIGQSDLFGLLAEESNDVEHV 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 F +N + + E+ LG Y +GHP++ Y+ L+ + T R + + Sbjct: 943 FVSAPFFTDNEWL--DGERETLGLYLTGHPINQYRKELKHYTAGRLVDVQPTERDVSATV 1000 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A +V+S + +KG R G +T + + + FFP Sbjct: 1001 AGLVISTRVLVNKKGKRWGLITLDDKSARMDVRFFP 1036 >gi|110834019|ref|YP_692878.1| DNA polymerase III subunit alpha [Alcanivorax borkumensis SK2] gi|110647130|emb|CAL16606.1| DNA polymerase III, alpha subunit [Alcanivorax borkumensis SK2] Length = 1166 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1051 (40%), Positives = 617/1051 (58%), Gaps = 40/1051 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++H+ YSL++G + + + +Q PA+A+TD +NLF+ ++F Q A AGI+ Sbjct: 4 PRFVHLRLHTDYSLVDGIVRVKELTKTCVNEQIPAVAVTDDSNLFALIKFYQNAMNAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P++G L + QG T + LV GYQ L L+SR + +Q + Sbjct: 64 PLMGADLWV----------QG-THIDEPAYLSFLVLNEVGYQNLTLLISRAWQTNQDRGR 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL E+ EGLI+L+ S G + + + A++ +GDR Y+ +QR Sbjct: 113 ALVKPEWLAEL-NEGLIVLSAASQGEVGQLLLAGKHEQAQQYARWLVSTYGDRFYLEVQR 171 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D V LA LP+VATN+ FL ED+EAH+ + + + RP+ Sbjct: 172 TSRPGDEDCLHASVALAEQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDPRRPK 231 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + YLK+ EM +FSDLPEALENTVEIARRC+ +++ LP F E I++ Sbjct: 232 KYSEEQYLKSADEMAQLFSDLPEALENTVEIARRCTLDIRLGENFLPDFPIPEGMTIEQY 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E + L+V L +DY RL FEL++I +M F GYFLIVADFIQW Sbjct: 292 FEKVSHDGLEERLKVLLDSDDPEYALKRKDYDDRLRFELDIINQMGFPGYFLIVADFIQW 351 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC ++ Sbjct: 352 AKDNEVPVGPGRGSGAGSLVAYALKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEK 411 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI YV +KYG + V+QIITFG++ AKA +RDV R PY DRL K+IP P Sbjct: 412 RDRVINYVADKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGVPGMT 471 Query: 487 VSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 +S +A+ + RE +D + D+ ++E++ KLEGL R+ HA G+VI L+ Sbjct: 472 LS-KALEQEETLREFLESDENSDKEAANEIMEMAFKLEGLTRNVGKHAGGVVIAPGKLTD 530 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDL 598 P+Y + VTQ++ +E AGL+KFDFLGLKTLT++ K+ + R DL Sbjct: 531 FAPLYCEEDGTNLVTQYDKDDVESAGLVKFDFLGLKTLTIIDWAVKAANVKRAREGLDDL 590 Query: 599 SL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ LL T +FQLES GM++ ++ ++PD EDIIALV+LYRPGP++ Sbjct: 591 VIDHIPLDDSPSFDLLKRGDTTAVFQLESQGMKELIKKLKPDVFEDIIALVALYRPGPLE 650 Query: 657 NIVVYN--NRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N NRK+G+E + P ++P+LK + GVI+YQEQVMQIAQ L+GY+L Sbjct: 651 SGMVDNFVNRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELAGYTLGG 710 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM+KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 711 ADMLRRAMGKKKPEEMEKQRAIFEEGAKGKGVDAGLAMKIFDLVEKFAGYGFNKSHSAAY 770 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++YQTAW+K HYP EF+AA+++ +M N +K+ F + + +Q++PP VN+ F Sbjct: 771 ALVAYQTAWLKVHYPAEFMAATISADMQNTDKVVTFIDECKTMGLQVLPPDVNSCGYRFT 830 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I Y L AIKG+G I+ A A+ F L DFC R+D KK+NRR LE++V Sbjct: 831 VNPEGDIVYGLGAIKGLGEGPIEAIVTARAEGGEFKDLFDFCRRIDLKKINRRSLEAMVR 890 Query: 888 AGALDCFG-----YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 AG LD G + R QLL +L + A +N ++F + + + + Sbjct: 891 AGVLDKLGLNSSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAMDDSPATAVEWKP 950 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 N R E+ LG + +GHP+D Y+ +++ T +G +A +VV Sbjct: 951 ARSWNDETRLNGERDTLGLFLTGHPIDQYEKEVQQFVTARINALQPTAKGEAATVAGLVV 1010 Query: 1003 S-KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + + R G R+ ++T + E + F Sbjct: 1011 ALRITRSKRSGERMAFITLDDKTGRVEVSVF 1041 >gi|110804236|ref|YP_687756.1| DNA polymerase III subunit alpha [Shigella flexneri 5 str. 8401] gi|110613784|gb|ABF02451.1| DNA polymerase III, alpha subunit [Shigella flexneri 5 str. 8401] Length = 1127 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1020 (41%), Positives = 615/1020 (60%), Gaps = 54/1020 (5%) Query: 42 PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101 PA+AITD NL ++F AGI+PI+G D ++Q +L + + + Sbjct: 4 PALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQCDLLGDE--------LTHLTV 53 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 L + GYQ L L+S+ Y G I WL E+ EGLI+L+GG G + R+ Sbjct: 54 LAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLR 112 Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220 +S + ++ + +++ F DR ++ L R R + V+LA LP+VATN+ F+ Sbjct: 113 GNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFI 172 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 D++AH++ +A+ + RPR +P Y+++ EM +F+D+PEAL NTVEIA+ Sbjct: 173 DSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAK 232 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD 336 RC+ +++ LP+F + E+ L +A GLE RLA + + Sbjct: 233 RCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGLEERLAFLFPDEEERLKRRPE 287 Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+D Sbjct: 288 YDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLD 347 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA Sbjct: 348 PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 407 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516 +RDVGR L PY VDR+ KLIP DP ++ +A + + E AD V L+++++ Sbjct: 408 VIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEPQLPEIYEADEEVKALIDMAR 466 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 KLEG+ R+A HA G+VI ++ P+Y D PVTQF+ +E AGL+KFDFLGL Sbjct: 467 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 526 Query: 577 KTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 +TLT++ +L+ + +R K +D++ IP DD +++ +L T +FQLES GM+ Sbjct: 527 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 586 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKE 684 ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E+I H + +L+ Sbjct: 587 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEP 646 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EEM KQ+ F GA KNGI+ Sbjct: 647 TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAE 706 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK+ Sbjct: 707 LAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVG 766 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPF 862 + + ++I+PP +N+ F V D+ I Y + AIKGVG I+EA + F Sbjct: 767 LVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYF 826 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 L D C+R D+KKLNRRVLE L+ +GA D G R L+ SL + K A K Sbjct: 827 RELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIG 886 Query: 923 HENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYFSGHPLDVY-K 972 ++F G ++ E +E S V + E+ LG Y +GHP++ Y K Sbjct: 887 QADMF----GVLAE----EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLK 938 Query: 973 PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I R +G ++ T RG I A +VV+ + T++G+RIG T + + E F Sbjct: 939 EIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 998 >gi|330896075|gb|EGH28296.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. japonica str. M301072PT] gi|330975384|gb|EGH75450.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1173 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1067 (39%), Positives = 623/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A D PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|77457343|ref|YP_346848.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens Pf0-1] gi|77381346|gb|ABA72859.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens Pf0-1] Length = 1173 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1065 (40%), Positives = 624/1065 (58%), Gaps = 65/1065 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + AGI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNTMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G +L ++N K P + I LLV A+GY+ L EL+SR ++ Q V Sbjct: 64 ICGA--------DLWLSN--KDPDGPLSRISLLVMNAQGYRNLTELISRGFIDGQRNGMV 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ E EGLIML+ G I A + AE + +F DR Y+ +QR Sbjct: 114 IIEREWVAE-ANEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYLEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D + V LA PLVATN+ F+ +ED+ AH+ + + + R + Sbjct: 173 NRPNDEEQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLP+A+ENTVEIA+RC+ +++ LP + + I Sbjct: 233 YSDQQYLKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RL+ + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV RA + DRL K+IP + Sbjct: 409 CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E+++KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ HP + P+L T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 648 GMVDDFINRKHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ FI G + N I +A NIF+L+ KFA YGFNKSH+AAY Sbjct: 708 DMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R +++ P VNT F V Sbjct: 768 LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I EA PF L DFC+RVD K++N+R L+ L+ +G Sbjct: 828 NDEGRIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887 Query: 890 ALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 ALD G +R LL +++ K A+ + R + H ++F G F Sbjct: 888 ALDRLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFG---GLF 944 Query: 935 ----SDKITLEKFSVENS-SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 +D + + + E + R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 945 VEEDADVYAVHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFA----RQRIID 1000 Query: 990 IRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A M+++ + K +KG ++G++T + + EA+ F Sbjct: 1001 LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|238754792|ref|ZP_04616143.1| DNA polymerase III subunit alpha [Yersinia ruckeri ATCC 29473] gi|238706952|gb|EEP99318.1| DNA polymerase III subunit alpha [Yersinia ruckeri ATCC 29473] Length = 1173 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1055 (40%), Positives = 619/1055 (58%), Gaps = 47/1055 (4%) Query: 4 YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 YL+ + P FVHL+VHS YS+++G + ++ + AA PA+A+TD NL ++F A Sbjct: 11 YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAVTDFTNLCGLVKFYGSA 70 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PIIG D +Q ++ + + +L +GYQ L L+S Y Sbjct: 71 HGAGIKPIIGA--DFCVQSDMLGDE--------LAQLTVLAKNNQGYQNLTLLISEAYQR 120 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 G I WL + EGLI+L+GG G + + + ++ L +++ F D Sbjct: 121 GYGPAGPTIDRDWLIK-HREGLILLSGGRMGDVGKFLVRGNQSQVDQCLDFYQEYFPDSY 179 Query: 183 YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ L R R + V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 180 YLELIRTGRPDEENYLHAAVALATARSLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLV 239 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 240 DPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM 299 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 E+ L K+ GLE RL AQ +Y +RLD EL VI +M F GYF Sbjct: 300 -----STEDFLVEKSRQGLEERLEFLFPDPEVRAQKRPEYDERLDIELKVINQMGFPGYF 354 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPD Sbjct: 355 LIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 414 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K Sbjct: 415 FDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 474 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P +P + +A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 475 LVPPEPGMTLE-KAFEAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPT 533 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 534 KITDFAPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTG 593 Query: 596 ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RP Sbjct: 594 LEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRP 653 Query: 653 GPIDNIVVYN--NRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGY Sbjct: 654 GPLQSGMVDNFIDRKHGREALSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY 713 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH Sbjct: 714 SLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKSQGIDGELAIKIFDLVEKFAGYGFNKSH 773 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 774 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGL 833 Query: 826 VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLE 883 F V D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE Sbjct: 834 YHFHVNDEGEIVYGIGAIKGVGEGPIEAMLEARNEGGYFKDLFDLCARVDTKKLNRRILE 893 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 LV +GA D G R L+ SL K A K ++F G +D + Sbjct: 894 KLVMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMF----GVLADAPEQVEQ 949 Query: 944 SVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRL 997 S N V + E+ LG Y +GHP+ Y K I R G ++ T RG Sbjct: 950 SYANVPHWQEQVVLDGERETLGLYLTGHPITQYLKEIERYTGGLRLKDMHPTDRGKMTTA 1009 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V + + T++G+RIG T + + E F Sbjct: 1010 VGLVTAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1044 >gi|218885238|ref|YP_002434559.1| DNA polymerase III subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756192|gb|ACL07091.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1173 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1039 (41%), Positives = 629/1039 (60%), Gaps = 32/1039 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+GA+ L ++ K PA AITD NL+ A+ F GI+PI Sbjct: 4 FVHLHCHTEYSLLDGAIRLKDLCAKAVDFGMPAAAITDHGNLYGAVYFYNTCKQFGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129 IGC++ + K + + +VLL EGY L++LVS +L G Sbjct: 64 IGCEVYVANDHTDKTSELARVRH----HLVLLARDNEGYHNLVKLVSHGFL--HGFHYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ + L++ + G+ L+ +G + RA + A + ++ ++ Y+ LQ + Sbjct: 118 RVDMDLLRQY-SGGITALSACLAGQVPRALLRSGMDDAIRIAREYEAIYPGNFYLELQSN 176 Query: 190 --RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + D E ++++LA LPLVATN+ +L D EAHDVL+ + V + R R Sbjct: 177 GLKEQDELNE-KLIELADHTGLPLVATNDCHYLEASDVEAHDVLLCIQTQAKVDDERRMR 235 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y K+ EM F+ +P+A+ NT IA +C+ + + P + E + Sbjct: 236 FETKELYYKSPEEMAKAFAHVPDAVANTGRIAEQCAVKFEFGKYVFPVYALPEGMTL--- 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+E R + GL+ RL + Y +RL+ EL+VI +M F GYFLIV DFI W Sbjct: 293 -EDEFRRLSREGLKRRLERHPNRDTIDHDLYWKRLELELDVIGQMGFPGYFLIVQDFINW 351 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N IPVGPGRGS AGS+ A++L IT++DP+ ++LLFERFLN +R+SMPD D+DFC+ R Sbjct: 352 AKDNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYNLLFERFLNIERVSMPDIDVDFCERR 411 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVIRYV KYG + VAQI TFG ++AKA +RDVGRAL M +++ DR+ KL+P D Sbjct: 412 RTEVIRYVGEKYGEDMVAQITTFGKMKAKAVVRDVGRALGMTFAETDRIAKLVPEDLKMT 471 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 V +AI + DP + +LL++S +LEGL RHASTHAAG+V+ DRP+ + +P+Y Sbjct: 472 VK-KAIDAEPDLAALYKTDPQIRKLLDVSMRLEGLSRHASTHAAGVVVSDRPMREYLPLY 530 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 R + ++ VTQF+MK +EK GL+KFDFLGL+T+TL+Q SLD +A++G DL + DD Sbjct: 531 RGKKGEI-VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDSLDEIARQGKTPPDLDTLALDD 589 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 ETY L + T GIFQ+ESSGMRQ L ++P C +D+IA+++LYRPGP+ + +V + Sbjct: 590 AETYELYSRGDTDGIFQVESSGMRQYLRMLKPSCFDDVIAMLALYRPGPLGSGMVDEFIK 649 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ + P ++ L++T GVI+YQEQVMQIAQ+ +GY+L AD+LRRAMGKK E Sbjct: 650 RKHGEVPVTYPLPSLEDCLRDTYGVIVYQEQVMQIAQIAAGYTLGGADLLRRAMGKKNAE 709 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM +Q+ +F+ GA KNG+ K A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K H+ Sbjct: 710 EMGQQRIKFVEGAQKNGVPKATADEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHF 769 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P EF+AA +T EM N +K+ K+ + I ++ P+V +F V + I + L IK Sbjct: 770 PTEFMAALLTSEMGNQDKLLKYVAACKDMGIAVLQPNVQASRREFTVHEGAIVFGLGGIK 829 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG R I++A + F SL D C RV+ +K+ +RVLESL+ GA DC G +R +L Sbjct: 830 NVGDEAIREIVDAREEGGVFASLLDLCMRVNLRKVTKRVLESLIKGGACDCLGCTRAGML 889 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITL---EKFSVE---NSSVRFEN 954 +LDN+ AQ K++ + ++F E+ I E+ + E + +RFE Sbjct: 890 AALDNVVSKAQKRLKDKESNQVSLFTMVPEEPAVCPGIGFDCEEQQAQEWDDDQKLRFEK 949 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E LGF+ + HPL Y+ L ++ + EE+ G +++ A +V ++ T+KG+R Sbjct: 950 E--ALGFFLTSHPLQPYRKELFRLRLTPLEETRDMAPGMSLKTAVLVTGIKEHMTKKGAR 1007 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++ + E FFP Sbjct: 1008 MAFLQVEDLTASGECVFFP 1026 >gi|217974045|ref|YP_002358796.1| DNA polymerase III subunit alpha [Shewanella baltica OS223] gi|217499180|gb|ACK47373.1| DNA polymerase III, alpha subunit [Shewanella baltica OS223] Length = 1157 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1044 (40%), Positives = 615/1044 (58%), Gaps = 38/1044 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ +G+ + ++ ++ GYQ L +++S+ YL Q Sbjct: 64 PIIGA--DFWMQ---VPGFEGE-----LCALTIIAMNNIGYQNLTQIISQAYLRGQVAGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 V I WL EG+++L+G G + +A +S E ++ F DR ++ L R Sbjct: 114 VVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIR 172 Query: 189 HRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 D RY V+ LA +P+VATN +FL ED++AH++ +A+ ++ RP Sbjct: 173 TGRPDEERYLHMAVI-LAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRP 231 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + YL++ EM +F+D+P AL N+VEIA+RC+ ++++ LP F + Sbjct: 232 KKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDM----- 286 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L + + GLE RL + +Y +RLD EL VI +M F GYFLIV + Sbjct: 287 SIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP + Sbjct: 407 CMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPE 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI ++ Sbjct: 467 PGMTLA-KAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + V+ + Sbjct: 526 APLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVRNGRKPIR 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I D + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 586 IEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSGY+L A Sbjct: 646 GMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN F V Sbjct: 766 LVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTV 825 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ AG Sbjct: 826 DDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAG 885 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948 ALD G R ++ +L + A K ++F D K + + Sbjct: 886 ALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPD 945 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E E+ LG Y +GHP++ Y L+ ++ T RG + A +VV+ + Sbjct: 946 KIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKIAKAAGLVVATRVML 1005 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1006 TKRGSKMGLLTLDDKSARLEIMLF 1029 >gi|307718499|ref|YP_003874031.1| DNA polymerase III subunit alpha [Spirochaeta thermophila DSM 6192] gi|306532224|gb|ADN01758.1| DNA polymerase III subunit alpha [Spirochaeta thermophila DSM 6192] Length = 1136 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1038 (41%), Positives = 617/1038 (59%), Gaps = 46/1038 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G++ +++ ++ A+A+TD NLF +EF +KA AAG+ PI Sbjct: 6 FVHLHVHSDYSLLDGSIKTGDLVKRVKELDMDAVALTDHGNLFGMIEFYKKARAAGVTPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--------L 122 +GC+ + + + ++LL GY L++LV+ YL + Sbjct: 66 LGCECYVAPESRTLKDQDHAANY----HLILLAENYTGYLNLLKLVTESYLTGFYYKPRI 121 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 D G L EGLI L+ G I A +R ++ LFG DR Sbjct: 122 DDG----------LLAAHHEGLIALSSCLGGEIPSLILGRQIDKARERARFYRDLFGPDR 171 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ H ++ R ++ +V+L+ ++PLVATN+ +L E EAH+VL+ + + + Sbjct: 172 FYLELQDHGLPEQKRVNKTLVELSKELDIPLVATNDVHYLLREHAEAHEVLLCIGTNKKL 231 Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 S +DR R T + YLK+ EM +F D+PEALENTV IA RC+F + P+LP + E Sbjct: 232 SDQDRMRFETQEFYLKSPEEMARLFEDIPEALENTVRIAERCAFEIPFPGPLLPEYHIPE 291 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYF 357 D E LR+ GL+ R YH ++ R+R D EL++I +M F+GYF Sbjct: 292 GFD---SPEAYLRHLTYEGLKKR---------YHQITREIRERADLELSIIIQMGFTGYF 339 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DF+ +AK+ IPVGPGRGSGAGS+ AYAL IT+IDPL++ LLFERFLNP+R+SMPD Sbjct: 340 LIVWDFVHFAKEQGIPVGPGRGSGAGSIVAYALGITNIDPLKYGLLFERFLNPERISMPD 399 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC RR+EVI YV KYG +RVAQIITFG+L+ KA ++DV R L +P+++ + L K Sbjct: 400 FDIDFCYARREEVIDYVTRKYGKDRVAQIITFGTLKPKAVIKDVARVLGIPFAEANELTK 459 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 L+ + A V +AI + R ARLA D + RL +I L+GL RHASTHAAGIVIG Sbjct: 460 LMGD--ASSVE-EAIQREPRL--ARLAEEDETYTRLFQIGSVLQGLSRHASTHAAGIVIG 514 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 L+ VP+YRD ++ TQ++M+ +E GL+K DFLGLKTLTL+ + + + Sbjct: 515 REALTNYVPLYRDPKTGDISTQYSMEHLEDCGLVKMDFLGLKTLTLITHTEELVRTHTPD 574 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 D IP DD +T+ LL + +FQ ES GM+ L +P+ IE++IAL +LYRPGP+ Sbjct: 575 FDTERIPEDDAQTFQLLAEGKSTCVFQFESEGMQNILRRAKPESIEELIALNALYRPGPM 634 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + K G+ KI HP ++P+LKET GVI+YQEQVMQIAQ ++GY+L AD+LRR Sbjct: 635 QFIDQFIEAKQGRRKITYPHPDLEPILKETYGVIVYQEQVMQIAQKIAGYTLGGADILRR 694 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK E M K+KE+FI+GA G S+ A +F+LL FA YGFNKSHAAAY+V++Y+ Sbjct: 695 AMGKKKPEVMAKEKEKFITGAVAQGYSRQFAEELFDLLIPFAGYGFNKSHAAAYSVLAYK 754 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYP EF+AA++T E+ N +K+ ++ + R I+++PP +N F V D +I Sbjct: 755 TAYLKAHYPAEFMAANLTNEIGNPDKLAQYIGETRAMGIEVLPPDINASERYFTVRDGKI 814 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L IK VGT I+ + PF S DF RVD + +NR+V+E+ + AG D Sbjct: 815 VYGLVGIKNVGTAAVEEILGKRKEGPFTSFIDFLFRVDLRTVNRKVIETCIQAGVFDSLH 874 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R +L+ +L+ + + +++ + +F + ++ ++ + E Sbjct: 875 PNRAELMHNLEALLAHVNRIKEQQEASQGFLFEETETQIREEFQFTPVEDWDTMEKLRYE 934 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + +LGFYFS HPLD + I K T +L ++ + ++ T+KG+R+ Sbjct: 935 RELLGFYFSSHPLDHLREIWEKGVNLDLSHPERTDPSRTYQLMGVLKTVREITTQKGNRM 994 Query: 1016 GWVTFSEPAKEYEANFFP 1033 + T + EA FFP Sbjct: 995 AFGTIEDYRGSIEAVFFP 1012 >gi|119471146|ref|ZP_01613678.1| DNA polymerase III subunit alpha [Alteromonadales bacterium TW-7] gi|119445802|gb|EAW27084.1| DNA polymerase III subunit alpha [Alteromonadales bacterium TW-7] Length = 1163 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1065 (41%), Positives = 612/1065 (57%), Gaps = 70/1065 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS +S+++G I+ K + PAIAITD N + F AGI Sbjct: 3 APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPAIAITDQMNFCGLVRFYGATHNAGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQG 125 +PI+G + ++P FP P I +L GY+ + L+S Y Sbjct: 63 KPIVGADFWL------------RSPEFPDEPCRITILAKDNVGYKNITLLISEAYQRGHV 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL EGLI+L+G G + +A N+ V E + +K+ F + Y+ Sbjct: 111 FHRPVIDREWLAN-HKEGLIILSGAKDGDLGKALLKNNPGVIESVISFYKQHFSEHYYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R +R + V+LA +LP+VATN +FL E++EAH++ +A+ + K Sbjct: 170 LVRTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKR 229 Query: 245 RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP R + + YLK +M +FSD+PEAL+NTVEIA+RC+ +++ LP + + Sbjct: 230 RPKRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVKLGEYFLPDYPTGSLN-- 287 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + GLE RL + +Y +RL EL VI +M F GYFLIV Sbjct: 288 ---IDEFLVKVSEDGLEERLQFLFPDEEDRKVKRVEYDERLAVELGVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 405 DFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + R +EA D V L+++ + LEG R+A HA G+VI ++ Sbjct: 465 GDPGMTLA-KAFEVEPRLQEAYDGDSEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---AQRGVK-- 595 +Y D PVTQF+ +E AGL+KFDFLGL+TLT+LQ ++D QR K Sbjct: 524 DFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMQREGKDP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD++ IP DD ++ LL T +FQLES GM+ + ++PDC ED+IALV+L+RPGP+ Sbjct: 584 VDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 + +V N +RK G+E+I S+ P++DP T G+I+YQEQVMQIAQ+L+G Sbjct: 644 QSGMVDNFIDRKLGREEISYPDAQYQHESLKPILDP----TYGIILYQEQVMQIAQVLAG 699 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM KQ+ F GA NGI +A+ IF+L+ KFA YGFNKS Sbjct: 700 YTLGGADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKS 759 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT WMKTH+P EF+AA M+ +MDN +KI + + ++PP VN Sbjct: 760 HSAAYALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAG 819 Query: 825 CVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882 F V I Y + AIKGVG I+EA A PF L DFC+RVD K+LN+RV Sbjct: 820 EFKFTVNLQGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVT 879 Query: 883 ESLVFAGALDCFGYSRMQ-----LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 E L++AGALD G + Q LL SL + + A K ++F Sbjct: 880 EKLIYAGALDKLGPEKNQAGRAILLASLKDAMRAADQHNKAEQLGQSDLFGL-------- 931 Query: 938 ITLEKFSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 + E VE + ++ E E+ LG Y +GHP++ Y+ LR + Sbjct: 932 LATEPDEVEQAFIKATGLTDNEWLEGEKDTLGLYLTGHPINQYRKELRYYTSGKLVDLQP 991 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 T R A +V+S + +KG+R G +T + + + FP Sbjct: 992 TNRDVLSTAAGLVISARTLINKKGNRWGLITLDDKSARIDVRLFP 1036 >gi|238759934|ref|ZP_04621088.1| DNA polymerase III subunit alpha [Yersinia aldovae ATCC 35236] gi|238701841|gb|EEP94404.1| DNA polymerase III subunit alpha [Yersinia aldovae ATCC 35236] Length = 1171 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1056 (40%), Positives = 621/1056 (58%), Gaps = 49/1056 (4%) Query: 4 YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 YL+ + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 9 YLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSA 68 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 +AGI+PIIG + Q + + + +L +GYQ L L+S Y Sbjct: 69 HSAGIKPIIGADFYV----------QSEILGDELAHLTVLARNNDGYQNLTLLISEAYQR 118 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDR 181 G I WL + EGLI+L+GG G + + F +Q L F ++ F D Sbjct: 119 GYGAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGK-FMLRGNQAQVDLCLDFYQEHFPDS 176 Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R R + V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 177 YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTL 236 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 237 VDPKRPKNYSPQQFMRDEEQMCELFADIPEALFNSVEIAKRCNVTIRLGEYFLPQFPTGD 296 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGY 356 E+ L K+ GLE R+ AQ +Y +RL+ EL VI +M F GY Sbjct: 297 M-----STEDFLVEKSKQGLEERMELLFPDPEERAQKRPEYDERLEIELKVINQMGFPGY 351 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP Sbjct: 352 FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 411 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 412 DFDVDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 471 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KL+P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 472 KLVPPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAP 530 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 531 TKITDFAPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKT 590 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+R Sbjct: 591 GLEPIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 650 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSG Sbjct: 651 PGPLQSGMVDNFIDRKHGREAISYPDIEWQHECLKPVLEPTYGIILYQEQVMQIAQVLSG 710 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKK EM KQ+ F GA + GI +A+ IF+L+ KFA YGFNKS Sbjct: 711 YSLGGADMLRRAMGKKNPAEMAKQRSVFEDGAKEQGIDGELAIKIFDLVEKFAGYGFNKS 770 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 771 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 830 Query: 825 CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882 F V D I Y + AIKGVG +++A + F L D C+RVD+KKLNRR+L Sbjct: 831 LYHFHVNDEGEIVYGIGAIKGVGEAPIEAMLDARKEGGYFKELFDLCARVDTKKLNRRIL 890 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E LV +GA D G R L+ SL K A K ++F G +D + Sbjct: 891 EKLVMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMF----GVLADAPEQVE 946 Query: 943 FSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIR 996 S N + + E+ LG Y +GHP+ Y K I R G ++ T RG Sbjct: 947 QSYANVPLWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTT 1006 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 1007 AVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|148981148|ref|ZP_01816310.1| DNA polymerase III subunit alpha [Vibrionales bacterium SWAT-3] gi|145960975|gb|EDK26300.1| DNA polymerase III subunit alpha [Vibrionales bacterium SWAT-3] Length = 1159 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1050 (40%), Positives = 625/1050 (59%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A G++ Sbjct: 4 PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D MQ + + ++ + + +L S +GY L L+S+ YL + Sbjct: 64 PIIGA--DFLMQ-SPEFGDE-------LTKLTVLASDNKGYNNLTLLISKAYLRGHIQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+G G I +A + + + +K F DR Y+ L R Sbjct: 114 PVIDKEWLIE-NAEGLIILSGAKEGEIGKALLKGNRDLVASSVEFYKTHFPDRFYLELIR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + ++LA +LP+VATN +FL+E+ ++AH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALELAEQQDLPVVATNEVVFLTEDLFDAHEIRVAIHDGYTMVDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ + YL++ EM +FSD+PEALEN+VEIA+RC+ +++ LP F + Sbjct: 231 PKNYSAQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGL---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RLA + +Y +RL EL V+ M F GYFLIV Sbjct: 287 -AIEDFLIKKSEEGLERRLAFLFPDEKERAERRPEYDERLKVELEVVNNMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID Sbjct: 346 EFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A+ + E D V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFLAEPA-LPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGKEPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD +++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E + H + L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 645 SGMVDNFIDRKHGREAVSYPDETWQHESLKDTLEPTYGIILYQEQVMQIAQILAGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYRFN 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VDDDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFS 944 +GALD G R ++ SL + K A + ++F G +D ++ + Sbjct: 885 SGALDRLGPHRAAMMASLADAVKAASQYHHAESFGQSDMF----GVLTDAPEEVEHKYTQ 940 Query: 945 VENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V S V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V+ Sbjct: 941 VPRWSEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E F Sbjct: 1001 AARVMTTKRGTRIGLMTIDDRSGRMEVMLF 1030 >gi|254491862|ref|ZP_05105041.1| DNA polymerase III, alpha subunit subfamily, putative [Methylophaga thiooxidans DMS010] gi|224463340|gb|EEF79610.1| DNA polymerase III, alpha subunit subfamily, putative [Methylophaga thiooxydans DMS010] Length = 1161 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1043 (41%), Positives = 625/1043 (59%), Gaps = 31/1043 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL +H+ YSL++G + + ++ +A PA+AITD +NLF+A++ A AG+ Sbjct: 2 SKQFVHLHLHTDYSLIDGLVRVKPLVKAVAEAGMPAVAITDQHNLFAAVKLFNAAMQAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+G L + + K + + VLL EG+ L L+SR Y+ Q Sbjct: 62 KPILGADLRLKDPSDAKSSTR----------FVLLCMNLEGFHNLSRLLSRAYMEGQQLG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL E ++GLI L+GG G + +A + +++L +++LF DR Y+ L Sbjct: 112 VPMIEADWL-EGQSDGLICLSGGREGVLGKALLNHQKDEIDQQLNFWQQLFPDRFYLELI 170 Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R D R ++ V LA ++P+VA+N+ FL + +EAH+ + + + RP Sbjct: 171 RTGREDEERFLRLAVALAGDRQIPVVASNDVRFLQPQHFEAHEAKVCIHDGRQLDDPRRP 230 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R +H YL++ +M+++F D+PEA+ENTVEIA+RC+ L + LP F E I + Sbjct: 231 RHYSEHQYLRSAEDMIALFDDIPEAIENTVEIAKRCNLQLSLGEHYLPDFPVPEGMTIDE 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E LEV L + + + Y +RL EL+VI M F GYFLIVADFIQ Sbjct: 291 FFSEESFKGLAERLEV-LFPDSTQREANKDRYEERLQIELDVINSMGFPGYFLIVADFIQ 349 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+S+PDFD+DFC D Sbjct: 350 WAKNNAVPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSLPDFDVDFCMD 409 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV YG + V+QIITFG++ AKA LRDVGR L PY VD+L KL+P + Sbjct: 410 GRDRVIDYVSQHYGRDHVSQIITFGTMAAKAVLRDVGRVLGHPYGFVDQLAKLVPFELKM 469 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++ +A+ + +E + V L++++ +LEGL R+ HA G+VI + L++ P+ Sbjct: 470 TLT-KALEQEPLLKERYNKEEEVKTLIDLALQLEGLTRNVGKHAGGVVIAPKVLTEYTPL 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSL 600 Y + V+QF+ +E GL+KFDFLGLKTLT++ +++ + A+ K+D++ Sbjct: 529 YCEHNGAGLVSQFDKDDVESVGLVKFDFLGLKTLTVIDWAMNNVRTLLPAEEADKIDITN 588 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD T+ LL T +FQLES GM++ ++ +QPD EDIIALV+L+RPGP+ + +V Sbjct: 589 LPLDDKPTFDLLKRCETTAVFQLESRGMKELVKRLQPDNFEDIIALVALFRPGPLQSGMV 648 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + NRK+G+ K+ H ++P+L T GVI+YQEQVMQIAQ+L+GYSL AD+LRRAMG Sbjct: 649 DDFVNRKHGRAKVDYPHQDLEPVLSPTYGVIVYQEQVMQIAQILAGYSLGGADMLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ++ F+ GA+ I + A IF+L+ KFA+YGFNKSH+AAYA+++YQTAW Sbjct: 709 KKKPEEMAKQRQIFLEGAAGRDIGEKEAGPIFDLMEKFAEYGFNKSHSAAYALVAYQTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYY 837 +K HYP F+AA ++ +MDN +K+ + R + + PP VN + F V D I Y Sbjct: 769 LKAHYPSAFMAAVLSADMDNTDKVVGLIDECRDMKLTVQPPDVNHSKIKFTVEDGTTIRY 828 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKGVG + I+ E + F+SL DFC RVD +K+NRRV+ESLV AGALD G Sbjct: 829 GLGAIKGVGESALAGIVSEREQGEAFESLYDFCRRVDMRKINRRVMESLVKAGALDSLGG 888 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENE 955 R L SL + A +++ + ++F + S D LE + ++E Sbjct: 889 HRASLEASLSKAMQIADQHRRDKDSGQNDLFGLTPDSDSADDEPLEIAAEWAEQQLLQSE 948 Query: 956 QRVLGFYFSGHPLDVYKP-----ILRKMGIKGYEESVATIRGNNIRL-AAMVVSKQQKKT 1009 + LG Y SGHP+D Y+ I +K+ ES R L A ++V+ + K+ Sbjct: 949 KETLGLYLSGHPIDRYEAELAEFIPKKINELDAPESKGYQRNEKPMLTAGLIVAIRTMKS 1008 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 + G R+ ++T + + E F Sbjct: 1009 KNGGRMAFITLDDQSARLEVRVF 1031 >gi|152987648|ref|YP_001346883.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PA7] gi|150962806|gb|ABR84831.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa PA7] Length = 1185 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1064 (40%), Positives = 634/1064 (59%), Gaps = 63/1064 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ +SL++G + + + +A PA+A+TD +N+ S ++F + A AGI+P Sbjct: 16 SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 75 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I C DI + + + P + + LL A GY+ L EL+SR + Q + Sbjct: 76 I--CGADIWLA-----SREEDGP---LSRLSLLAMNARGYRNLTELISRGWSEGQRNGEI 125 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W++ EGLI L+ G I A AE L + ++F +R YV +QR Sbjct: 126 IIERDWVK-AAAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 184 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R D V LA PLVATN+ F+ +ED+EAH+ + + + RPR Sbjct: 185 SRVNDEEHLHAAVALASRCNAPLVATNDVRFIRQEDFEAHETRVCIGEGRTLDDPRRPRT 244 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ +EM +FSDLPEALENTVEIA+RC+ +Q+ LP F I Sbjct: 245 YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 300 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ LR+ + GLE RL + + K Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 301 DDYLRHASFEGLEERL-EVLLPKDTPDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMD 359 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 360 FIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 419 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV + YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 420 CMEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 479 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ +D + E++ KLEG+ R HA G+VI L+ Sbjct: 480 VGMTLE-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDF 538 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + A++G++ V+ Sbjct: 539 SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVN 598 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 599 IDFIPLDDKPTYALLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 658 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 659 GMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGA 718 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ FI G NGI +A NIF+L+ KFA YGFNKSH+AAY Sbjct: 719 DMLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 778 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+KTH+P F+AA +T +M N +K+ ++ R ++I+ P VN F V Sbjct: 779 LVSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTV 838 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ RI Y L AIKGVG I E A+ PF++L DFC RVD K++N+R LE+L+ A Sbjct: 839 DDDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRA 898 Query: 889 GALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929 GALD G +R LL +++ + A+ ++ + H ++F Sbjct: 899 GALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAE 958 Query: 930 -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 E +++ +++ +++ R + E+ LG Y +GHP+D Y+ +R+ + E + Sbjct: 959 PEADVYANHRKVKELTLKE---RLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVE-LK 1014 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R +A ++V+ + K +KG ++G+VT + + EA+ F Sbjct: 1015 PARDTQT-VAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1057 >gi|320155607|ref|YP_004187986.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O] gi|319930919|gb|ADV85783.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O] Length = 1143 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1039 (41%), Positives = 623/1039 (59%), Gaps = 53/1039 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + ++ ++AA PA+A+TD NL ++F A GI+PIIG D MQ Sbjct: 1 MVDGINKVPALVKQVAALGMPAMALTDFTNLCGLVKFYGAAHGNGIKPIIGA--DFKMQ- 57 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + ++ + + +L + GY+ L L+S+ YL + I WL E+ + Sbjct: 58 SPEFGDE-------LTQLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWLIEL-S 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+G +G I +A + ++ E + +++ F DR Y+ L R R + Sbjct: 110 EGLIILSGARNGEIGKALLKGNQKLVESCVAFYQQHFADRFYLELIRTGRSDEETYLHFA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 ++LA ++LP+VATN +F+ +E ++AH++ +A+ + RP+ +P YL+ E Sbjct: 170 IELAEQYDLPVVATNEVVFIGQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALEN+VEIA+RC+ +++ LP F + E L K+ GL Sbjct: 230 MCELFADIPEALENSVEIAKRCNVTVRLWEYFLPAFPTEGM-----AETEFLVMKSKEGL 284 Query: 320 EVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL AQ +Y +RL EL+VI +M F GYFLIV +FIQW+K N IPVGP Sbjct: 285 EERLEFLFPDPEIRAQRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLE-KAFKAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 E AD V L+++ + LEG R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 ALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L + R V + IP DD ++ + Sbjct: 524 QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVRIESIPLDDPASFRI 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 I S+ ++DP T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK Sbjct: 644 AISYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 699 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K Sbjct: 700 KPEEMAKQRATFEEGAVKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 759 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSL 839 THYP EF+AA MT +MDN EK+ + + + ++PP +N+ F V +N I Y + Sbjct: 760 THYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGI 819 Query: 840 AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L++AGALD G R Sbjct: 820 GAIKGVGEGPIDAILEARTKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHR 879 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVE--NSSVRFE 953 L+ SLD+ K A + ++F G +D ++ + VE V E Sbjct: 880 AALMASLDDAVKAASQHHQAEAFGQADMF----GVLTDAPEEVEHKYIQVEPWPEKVWLE 935 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LG Y +GHP++ Y L K +++ T R ++ LA +V++ + T++G+ Sbjct: 936 GERETLGLYLTGHPVNAYLTELNKYTSCRLKDATPTRRDQSLTLAGLVIAARVMTTKRGT 995 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 RIG +T + + E F Sbjct: 996 RIGIMTLDDRSGRMEVMLF 1014 >gi|88798272|ref|ZP_01113858.1| DNA polymerase III subunit alpha [Reinekea sp. MED297] gi|88779048|gb|EAR10237.1| DNA polymerase III subunit alpha [Reinekea sp. MED297] Length = 1167 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1052 (39%), Positives = 623/1052 (59%), Gaps = 45/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL +G + + +++++ + + PA+A+TD +N F ++F AGI+P Sbjct: 3 SFVHLRLHTEYSLTDGIVRIKDLINRASELEFPAVAVTDISNFFGLVKFYNGCLGAGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G L I+ D+ PF + +L GY+ L EL+S + +Q Sbjct: 63 ILGADLYIENPDD------DNAPF----LMTVLAMNETGYRNLTELISDGFQKNQKHDRA 112 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 + WL E EGLI+L+G G + A ++ AE + +K +FGDR Y+ LQR Sbjct: 113 ITRVEWLAE-KNEGLIVLSGARLGDVGYALLRGNNDRAESLVQHWKSVFGDRYYLELQRT 171 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R D V L + +P+VATN+ +FL+ ED+EAH+ + + + RPR Sbjct: 172 GRDQDESLVQGAVALGRKYGVPVVATNDVMFLTREDFEAHETRVCINDGVTIDDPKRPRR 231 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +F D+P+ALEN+V IA+RCS +Q+ LP + E + Sbjct: 232 YAEEQYLKSSDEMTELFRDIPQALENSVLIAQRCSATVQLGKYFLPDYPVPEGLTM---- 287 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVADF 363 ++ R + GLE RLA K ++ RQ RL FEL++I +M F GYFLIV DF Sbjct: 288 DDYFRQLSAEGLERRLAVALDPKQPDFEERRQQYFDRLKFELDIIIQMGFPGYFLIVMDF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W K N +PVGPGRGSGAGS+ A+ L ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IRWGKNNGVPVGPGRGSGAGSLVAWVLDITDLDPIEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + R+ VI YV YG + V+QI+TFG++ AKA +RDV R P+ D+L KLIP DP Sbjct: 408 MEGRERVINYVAETYGRQAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADKLSKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A+ + + +E D + E++ KLEG+ R HA G+VI L+ Sbjct: 468 GMKLT-KALDEVAELKEFLEEDEEAAEIWEMALKLEGITRQTGKHAGGVVIAPTKLTDFS 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598 P+ + VTQ++ +E AGL+KFDFLGL+TLT++ +L + AQ +D+ Sbjct: 527 PLLCEEDGTGLVTQYDKNDVEAAGLVKFDFLGLRTLTIIDWALKIINPRLEAQGKEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD ++ LL T +FQLES GM+ + +QPDC+ED+IALV+L+RPGP+ + Sbjct: 587 AHIPLDDAASFELLQQAKTTAVFQLESRGMKDLVMRLQPDCLEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N NRK+G+E++ H ++P+L T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFINRKHGREELSYPDSQYQHEWLEPILAPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRAIFEEGAIGKGVDGNLAMRIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP F+AA+M+ E+ N EK+ F ++ RQ NI ++PP VN F V Sbjct: 767 VSYQTLWLKTHYPAAFMAATMSSELQNTEKVVIFVEECRQINIDVLPPDVNAGDYYFTVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + ++I Y L AIKGVG I+ A + PF L DFC R+D KK+N+R +E+L+ AG Sbjct: 827 EQDQIIYGLGAIKGVGEGPVEAIVNARRSGGPFKDLFDFCERIDPKKVNKRSIEALIKAG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 ALD G +R +L++ + K A+ N ++F + + + V S+ Sbjct: 887 ALDSIGPNRQLMLEATPDAVKTAEQSAANAAAGMMDMFGAIEAEETGDVYEPYAHVREST 946 Query: 950 --VRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVATIRGNNIR-LAAM 1000 +R E+ LG Y +GHP+D ++ +R++ + G E + R NI+ LA + Sbjct: 947 LKIRLAGEKDTLGLYLTGHPIDEFENEVRQVATLRLGELDGSAEELKRARRGNIKTLAGL 1006 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V+ + ++T++G + VT + E F Sbjct: 1007 VMGVRTRQTQRGDTMAIVTLDDRTGRIEMTLF 1038 >gi|212704482|ref|ZP_03312610.1| hypothetical protein DESPIG_02538 [Desulfovibrio piger ATCC 29098] gi|212672049|gb|EEB32532.1| hypothetical protein DESPIG_02538 [Desulfovibrio piger ATCC 29098] Length = 1157 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1036 (40%), Positives = 625/1036 (60%), Gaps = 25/1036 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+GA+ + ++ + PA AITD NLF A +F GI+PI Sbjct: 4 FVHLHCHTEYSLLDGAIRVKDLCSRAKDFGMPACAITDHGNLFGAAKFFLTCKDFGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + D+L T++ ++LL EGY L++LVSR YL + R Sbjct: 64 IGCEVYV-CHDHLDKTSELAR---KRNHLILLSENIEGYHNLVKLVSRSYL-EGFHYKPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L++ +EGLI L+ +G I RA A + ++ DR Y+ LQ + Sbjct: 119 VDKAMLRQY-SEGLICLSACIAGEIPRALNAGDMDGAIALAREYADIYPDRFYLELQSNS 177 Query: 191 GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 ++ ++ ++++A +LP+VATN+ +L+ +D +AH+VL+ + T + R R Sbjct: 178 LPEQEIANKGLLEIADHLKLPIVATNDCHYLNADDADAHEVLLCIQTQTTMDDPKRMRFG 237 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T D Y K+ EM ++F LP++L NT EIA RC+ L + P + E + + Sbjct: 238 THDLYYKSGEEMEAVFGHLPQSLSNTAEIAERCNVELDMGHHYFPVYKLPEGASL----D 293 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 +E R A GLE RL + + Q YR RL +EL VI M F GYFLIV +FI WAK Sbjct: 294 SEFRRLAEEGLERRLEKHPNRANINPQAYRDRLQYELKVILEMGFPGYFLIVQEFINWAK 353 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + IPVGPGRGS AGS+ A++L IT++DPL ++LLFERFLN +R+S+PD D+DFC+ RR Sbjct: 354 DHGIPVGPGRGSAAGSLVAWSLRITNLDPLPYNLLFERFLNAERVSLPDIDVDFCERRRT 413 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+++ + YG + VAQI TFG+++AK +RDVGRAL M +++ DR+ KL+P+D ++ Sbjct: 414 EVIQHMVDTYGKDSVAQITTFGTMKAKGVVRDVGRALGMSFAETDRIAKLVPDDLKMTIN 473 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + + DP V +LL+ +++LEGL RHASTHAAG+V+ RP+ + +P+Y Sbjct: 474 -KALEAEPDLQNLYDTDPQVKKLLDTARRLEGLSRHASTHAAGLVVSPRPMDEFLPLYTG 532 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607 R +L VTQF+ EK+GL+KFDFLGLKT+TL+Q +LD + +G DL +P D Sbjct: 533 KRGEL-VTQFDGPMTEKSGLVKFDFLGLKTMTLIQDTLDNITLQGKTPPDLDNLPLTDAA 591 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665 TY L T GIFQ+ESSGMRQ L ++P C ED+IA+++LYRPGP+ + +V + RK Sbjct: 592 TYDLYARGDTDGIFQVESSGMRQYLRMLKPSCFEDVIAMLALYRPGPLGSGMVDEFIKRK 651 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+ +V H + L++T GVI+YQEQVMQIAQ+++ Y+L AD+LRRAMGKK E M Sbjct: 652 HGQVPVVYPHESLSDCLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKPEAM 711 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 K++ +F+ GA KNG+ K A IF+L+ KFA+YGFNKSH+AAYA ISY TA++K H+ V Sbjct: 712 AKERVKFVEGAQKNGVDKAKADEIFDLMEKFAEYGFNKSHSAAYAQISYFTAYLKVHHTV 771 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+AA +T EM N EK+ K+ + I ++ PSVN F + ++ + L IK V Sbjct: 772 EFMAALLTSEMSNQEKLLKYISCCKDMGIDVVQPSVNASQRSFSAREGKVVFGLGGIKNV 831 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G + IM+A D + SL D C RVD +K+ +RVLE+L+ GA DCFG SR LL +L Sbjct: 832 GDSAITEIMDARKDGEYVSLFDMCCRVDLRKVTKRVLEALIKGGACDCFGVSRAALLAAL 891 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-------RFENEQRV 958 D + AQ K + + ++ A + F S + R +NE+ Sbjct: 892 DTVVTRAQKKAKEKNSNQISLLAMAPQVEAKPQPGIGFDCPESGIPEMDEDQRLKNEKEA 951 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGW 1017 LGF+ + HPL + +R++ + E++ + A +VVS ++ T+ KG R+ + Sbjct: 952 LGFFLTSHPLQPFSREMRRLRLTTLEDARDLYPKAELSTAVLVVSLKEVITKSKGERMAF 1011 Query: 1018 VTFSEPAKEYEANFFP 1033 V + E FFP Sbjct: 1012 VGVEDLTGHAEVTFFP 1027 >gi|269101954|ref|ZP_06154651.1| DNA polymerase III alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268161852|gb|EEZ40348.1| DNA polymerase III alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 1159 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1048 (39%), Positives = 627/1048 (59%), Gaps = 45/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + I+ K + Q PA+AITD NL ++F A AGI+ Sbjct: 4 PRFIHLRVHSDFSMIDGLAKVKPIIKKASELQMPALAITDFTNLCGLVKFYYAAHDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + ++ G F + +L + EGY+ L L+S Y + Sbjct: 64 PIIGADFKVQSEE------LGDELF----DLTILAANNEGYKNLTLLISEAYQRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + +GLI+L+GG +G + +A + + E+ + ++ F D Y+ L R Sbjct: 114 PVIDKEWLIK-HKDGLILLSGGKTGDVGKALLKGNQNMVEQCVAFYQTYFSDSYYLELVR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + ++LA +LP+VATN+ LS + +EAH++ +A+ ++ +RP+ Sbjct: 173 TGRPDEEAYLHFAIELAEKAQLPVVATNDVRLLSADQFEAHEIRVAIHDGYTLADPNRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + YL++ EM +F+D+PEALEN+VEIA+RC+ +++ LP F E Sbjct: 233 NYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTGEL-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVVKSKEGLEERLEFLFPDPDIRAERRPEYDERLEVELEVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P +P Sbjct: 408 MDKRDQVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + +++ +D V L+++ + LEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFDAEPQLQQSYDSDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + AQ V++ Sbjct: 527 PLYCDAEGHHPVTQFDKNDVESAGLVKFDFLGLRTLTIIDWALGMINPRLEAQGEDPVNI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP D +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPMADQKSFTMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E + H + +L T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREAVSYPDEKWQHESLKDILDPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F +GA KNG+ +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRAVFEAGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +KI + + ++++PP VN F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKIIGLVDECHRMKLKLLPPDVNKGLYRFNVD 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + A+KGVG +I+ A A F L DFC+R+D+KK+N+RVLE L+ +G Sbjct: 827 DQGAIVYGIGAVKGVGEGPIENIIAAREAGGHFKDLFDFCARIDTKKVNKRVLERLIKSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-- 947 A+D G +R ++ SLD+ + A + ++F G ++ + N Sbjct: 887 AMDRLGPNRASMMASLDDAIRAASQHHQAEAFGQTDMF----GVLTEAPEEVEHKYANIP 942 Query: 948 ---SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L+ +++ T R +A +V++ Sbjct: 943 EWPDKVWLEGERETLGLYLTGHPINSYLSELKHYTTWRLKDAQPTRRDGAATVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLLTLDDRSGRMEVMLF 1030 >gi|59712554|ref|YP_205330.1| DNA polymerase III subunit alpha [Vibrio fischeri ES114] gi|59480655|gb|AAW86442.1| DNA polymerase III alpha subunit [Vibrio fischeri ES114] Length = 1159 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1054 (40%), Positives = 624/1054 (59%), Gaps = 57/1054 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+++G + ++ K+ PA+A+TD NL +++ A AG++ Sbjct: 4 PKFVHLRVHSDFSMVDGLSKVPPLVKKVGELGMPAMALTDFTNLCGLVKYYFAAHGAGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q+ G F ++ +L EGY+ L L+S Y + + Sbjct: 64 PIIGADFKVQSQEF------GNELF----NLTVLAKNNEGYKNLTLLISEAYQRGHVQHT 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL EGLI+L+GG SG + +A + ++ + + ++ F + Y+ L R Sbjct: 114 PVMDKEWLVN-HKEGLILLSGGKSGDVGKALLKGNKELVNECVEFYQMHFPEHYYLELTR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + V+LA LP+VATN+ F+ +D++AH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDPRR 230 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P++ D YL++ EM +FSD+PEALEN+VEIA+RC+ +++ LP F + Sbjct: 231 PKLYSDQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E+ L K+ GLE RLA + +Y RL EL+VI +M F GYFLIV Sbjct: 287 -KIEDFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDDRLQIELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID Sbjct: 346 EFIQWSKDNAIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P+ Sbjct: 406 FCMDKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPS 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP ++ +A + + E AD V L+++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLA-KAFEAEPQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R + V Sbjct: 525 FAPLYCDADGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + I +D +++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIESISLEDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E++ H + L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 645 SGMVDNFIDRKHGREEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN +KI + + + ++PP VN+ F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLTVLPPDVNSGLYRFN 824 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I Y + AIKGVG +I+EA + F L DFC+R+D+KK N+RV+E L+ Sbjct: 825 VDEKGAIVYGIGAIKGVGEGPIENIIEARNKGGHFRDLFDFCARIDTKKTNKRVVEKLIR 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGALD G R L+ SLD+ K A + + ++F +T VE Sbjct: 885 AGALDRLGPHRAALMASLDDAMKAAGQHHQAESFGQSDMFG--------VLTQAPEEVEQ 936 Query: 948 S---------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 + V E E+ LG Y +GHP++ Y L + ++ T R + +A Sbjct: 937 AYIHVPKWPEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVA 996 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG +T + + E F Sbjct: 997 GLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|14194702|sp|Q9XDH6|DPO3A_PSEFL RecName: Full=DNA polymerase III subunit alpha gi|5531684|gb|AAD44402.1|AF062919_1 DNA polymerase III [Pseudomonas fluorescens] Length = 1173 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1065 (40%), Positives = 624/1065 (58%), Gaps = 65/1065 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A AGI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G +L ++N K P + I LLV A+GY+ L EL+SR ++ Q V Sbjct: 64 ICGA--------DLWLSN--KDPDGPLSRISLLVMNAQGYRNLTELISRGFIDGQRNGMV 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ E EGLIML+ G I A + AE + +F DR Y+ +QR Sbjct: 114 IIEREWVAE-ANEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYLEIQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D + V LA PLVATN+ F+ +ED+ AH+ + + + R + Sbjct: 173 NRPNDEEQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLP+A+ENTVEIA+RC+ +++ LP + + I Sbjct: 233 YSDQQYLKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RL+ + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV RA + DRL K++P + Sbjct: 409 CMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMVPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E+++KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++ DC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKLDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ HP + P+L T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 648 GMVDDFINRKHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ FI G + N I +A NIF+L+ KFA YGFNKSH+AAY Sbjct: 708 DMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R +++ P VNT F V Sbjct: 768 LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTV 827 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I EA PF L DFC+RVD K++N+R L+ L+ +G Sbjct: 828 NDEGRIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887 Query: 890 ALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 ALD G +R LL +++ K A+ + R + H ++F G F Sbjct: 888 ALDRLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFG---GLF 944 Query: 935 ----SDKITLEKFSVENS-SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 +D + + + E + R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 945 VEEDADVYAIHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFA----RQRIID 1000 Query: 990 IRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A M+++ + K +KG ++G++T + + EA+ F Sbjct: 1001 LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|302187913|ref|ZP_07264586.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae 642] Length = 1173 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQSGPFKDLFDFCARVDLKRVNKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|71279814|ref|YP_268312.1| DNA polymerase III subunit alpha [Colwellia psychrerythraea 34H] gi|71145554|gb|AAZ26027.1| DNA polymerase III, alpha subunit [Colwellia psychrerythraea 34H] Length = 1186 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1062 (40%), Positives = 617/1062 (58%), Gaps = 58/1062 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+ +G + I+ K PA+A+TD NL +++ A AGI+ Sbjct: 18 PKFIHLRVHSDYSMCDGLKKVKPIVAKAVELNMPALALTDQTNLCGLVKYYHAAHGAGIK 77 Query: 69 PIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIGC + +++D L IV+L + GY+ + EL+S+ Y+ Sbjct: 78 PIIGCDFWVKSDELEDELS-------------RIVVLTTNNVGYKNITELISKAYMRGHI 124 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + I SWL E EGLI+L+GG G I +A ++++ ++ + +++ F ++ Sbjct: 125 QNKAVIDKSWLVEY-KEGLILLSGGREGDIGKALLKGNTELVDEMVSFYQQHFDRCYFLE 183 Query: 186 LQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D + V+LA LP+VATN +FLS D++AH++ +A+ + K Sbjct: 184 LVRTGRNDEENYIHLAVELAEKENLPVVATNEVMFLSPNDFDAHEIRVAIHDGFTLDDKR 243 Query: 245 RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP R + + YL++ EM +FSD+PEAL N+VEIA+RC+ + + +LP F Sbjct: 244 RPKRYSSEQYLRSEEEMCELFSDIPEALANSVEIAKRCNVTVTLGEYVLPDF------PT 297 Query: 304 QKEEENELRNK-AVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + E N+ K + GLE RL Q A + Y +RL EL V+ M F GYFL Sbjct: 298 EGLEINDFFIKVSEKGLEKRLDQLFDRQADDFAEIRKPYDERLAIELEVVNNMGFPGYFL 357 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF Sbjct: 358 IVMEFIQWSKDNNIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDF 417 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 418 DIDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 477 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP P ++ +A ++ + E D V L+++ + LEG R+A HA G+VI Sbjct: 478 IPPTPGMTLA-KAFEEEPKLPEVYAQDSDVKDLIDMCRILEGTTRNAGKHAGGVVISPTT 536 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT+LQ +++ + +K Sbjct: 537 ITDFAPLYCDDEGKNPVTQFDKNDVEDAGLVKFDFLGLRTLTILQWAIEMADAKLIKAGK 596 Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +D++ I +D ++ LL T +FQLESSGM+ ++ ++PDC EDIIALV+L+RPG Sbjct: 597 EPIDITKIDLEDKASFKLLLASKTTAVFQLESSGMKSLIDKLKPDCFEDIIALVALFRPG 656 Query: 654 PIDNIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GYS Sbjct: 657 PLQSGMVDNFIERKHGREEVSYPDATWQHEDLQPVLEPTYGIILYQEQVMQIAQVLAGYS 716 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+ Sbjct: 717 LGGADMLRRAMGKKKPEEMAKQRAGFEQGAKDRGVDGELAMKIFDLVEKFAGYGFNKSHS 776 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT WMKTH+P F+AA M+ +MDN EKI + I ++PP VN Sbjct: 777 AAYALVSYQTLWMKTHFPAPFMAAVMSADMDNTEKIVTLVDECGNMEIDLLPPDVNAGQY 836 Query: 827 DFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V DN+I Y + A+KGVG I+ A +D PF L DFC+R+D KK N+RVLE Sbjct: 837 KFTVNSDNQIVYGIGAVKGVGEGPIEAIISARQSDGPFTDLFDFCARLDLKKTNKRVLEK 896 Query: 885 LVFAGALDCF------------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 L+ +GA+D G +R L ++L K A+ K + ++F Sbjct: 897 LIKSGAMDSLGPKYVQGKAKEQGANRAALFETLPEAIKAAEQHAKAESLGQNDLFGLIND 956 Query: 933 TFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 +D + T ++ + E+ LG Y +GHP++ Y ++K T R Sbjct: 957 EQTDSRQTFKEVRAWPEEKWLDGEKETLGLYLTGHPINRYLSEIKKYSSSRLVVMQPTGR 1016 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V+ + ++G R VT + + + FP Sbjct: 1017 DRQAVAVGLVIGVRVLVNKRGRRWALVTLDDKSARMDIRLFP 1058 >gi|330959213|gb|EGH59473.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1173 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A+ L + ++F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADDLLREWLQVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRTNDEEHLHAAVALAQRHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RL+ + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLSVLLPKETTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEAPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRVNKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++R + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|330872712|gb|EGH06861.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1173 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1067 (39%), Positives = 623/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + +F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPAEADELLREWLAVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+++ D+EAH+ + + + R Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E+++KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEAPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|298488347|ref|ZP_07006379.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157169|gb|EFH98257.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1173 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + +F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|260767810|ref|ZP_05876745.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972] gi|260617319|gb|EEX42503.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972] Length = 1159 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1051 (40%), Positives = 617/1051 (58%), Gaps = 51/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYGTAHGCGVK 63 Query: 69 PIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PI+G + + D L + +L GY+ L L+S YL Sbjct: 64 PIVGADFLVRSEEFGDELT-------------RLTVLAKDNVGYKNLTLLISDAYLRGHV 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + I WL + EGLI+L+G G I RA + + EK + ++ F D Y+ Sbjct: 111 QNQPVIDKEWLIKY-AEGLILLSGAKGGDIGRALLKGNQALVEKCVAFYQTHFTDNFYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + ++LA ELP+VATN+ +F+ + ++AH++ +A+ + Sbjct: 170 LVRTGRADEENYLHFALELAEQAELPVVATNDVVFIDPDQFDAHEIRVAIHDGYTLEDPR 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ + YL++ EM +F D+PEALEN+VEIA+RC+ +++ LP F + Sbjct: 230 RPKNYSAQQYLRSEEEMCELFDDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE----- 284 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 EE L K+ GLE RL + Y +RL+ EL VI +M F GYFLIV Sbjct: 285 GMEETEFLVKKSHEGLEERLEFLFPDPAVRAERRPAYDERLEIELKVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ K+IP Sbjct: 405 DFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKMIP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A + +E AD V L+++ + LEG R+A HA G+VI ++ Sbjct: 465 PDPGMTLE-KAFKAEPALQELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTAIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 524 DFAPIYCDSEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLINPRREKAGEPP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V + IP D ++ +L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 584 VRIESIPLVDPASFRMLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 644 QSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F SGA NG+ +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKKPEEMAKQRAVFQSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+KTH+P EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 764 YALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECMRMGLTVLPPDINSGLYRF 823 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V D I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ Sbjct: 824 NVDDTGAIVYGIGAIKGVGEGPIEVILEARNKGGYFKDLFDFCARIDIKKVNKRVIEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKF 943 AGALD G R ++ SLD+ K A + ++F G +D ++ + Sbjct: 884 LAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMF----GVLTDAPEEVERKYI 939 Query: 944 SVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 V V E E+ LG Y +GHP++ Y L K E++ T R ++ +A +V Sbjct: 940 QVPEWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLNEAMPTRRDQSLTVAGLV 999 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + T++G+RIG +T + + E F Sbjct: 1000 IAARVMTTKRGNRIGLMTLDDRSGRMEVMLF 1030 >gi|92112711|ref|YP_572639.1| DNA polymerase III subunit alpha [Chromohalobacter salexigens DSM 3043] gi|91795801|gb|ABE57940.1| DNA polymerase III, alpha subunit [Chromohalobacter salexigens DSM 3043] Length = 1168 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1053 (40%), Positives = 626/1053 (59%), Gaps = 51/1053 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VH+ YSL++G + L +++ PA+A+TD +NLF ++ + A AG++P+ Sbjct: 5 FVHLRVHTEYSLVDGLVRLKPLIEATVEGGMPAVAVTDDSNLFGLVKTYKAAQGAGLKPV 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG +L M N P + LL +GY+ L EL+S+ + Q + Sbjct: 65 IGA--------DLWMENPHDEEHPY--RVTLLAMDNDGYRHLTELISQGWSEGQQRGQGI 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + W+ + GLI L+G G I R Q A + +K F R Y+ +QR Sbjct: 115 LKKEWIF-ARSAGLIALSGARDGEIGRYLLSEHGQAARELCEGWKAAFPGRFYLEVQRTG 173 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R +D V LA E P+VATN+ FL+ EDY AH+ +A+ + R R Sbjct: 174 REHDEECLHLSVALAAETETPVVATNDVRFLTREDYWAHETRVAIGEGKALDDPRRERRY 233 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + + YLK+ EM +FSDLPEALEN+V IA RC+ + + LP + + + + Sbjct: 234 SEEQYLKSPQEMAELFSDLPEALENSVMIAARCNVDVPLGEIFLPEYPVPDGMSM----D 289 Query: 309 NELRNKAVAGLEVRL-----AQGAIAKGYHAQDY----RQRLDFELNVIARMKFSGYFLI 359 R + GL RL + I G +Y R+RLDFELN+I M F GYFLI Sbjct: 290 GFFRKISHDGLTERLDKLFSGENPIYPGRDLAEYEPAYRERLDFELNIILEMGFPGYFLI 349 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFIQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 350 VMDFIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 409 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI YV ++YG + V+QI+TFG++ AKA +RDV RA PYS D+L KLI Sbjct: 410 VDFCMEKRDRVIEYVASRYGRDAVSQIVTFGTMAAKAVVRDVARAQGKPYSMGDKLSKLI 469 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P + ++ +AI + +E +D + +++ KLEG+ R HA G+VI L Sbjct: 470 PFEVGMTLA-KAIEQEPALKEYLDSDEESQEIWDMALKLEGITRGTGKHAGGVVIAPTKL 528 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRG-V 594 + P+ D V Q++ IE+AGL+KFDFLGL+TLT++ +L+ + A+ G Sbjct: 529 TDFSPLLCDEDGSGLVVQYDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDTVRAREGQG 588 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD T+ +L T +FQLES GM++ ++ +QPD +ED+IALV+L+RPGP Sbjct: 589 PLDIASIPLDDVPTFDMLKKAETTAVFQLESRGMKELIKRLQPDSLEDMIALVALFRPGP 648 Query: 655 IDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + NRK+G+ ++ HP L+ P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 649 LQSGMVDDFINRKHGRAEVAYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 708 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 +AD+LRRAMGKK EEM KQ+ F+ G + NGI K +A N+F+L+ KFA YGFNKSH+A Sbjct: 709 GQADMLRRAMGKKKPEEMAKQRAGFMEGCAANGIDKDLAGNLFDLVEKFAGYGFNKSHSA 768 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY ++SYQTAW+K HYP F+AA ++ EMDN++K+ ++ R + + PP VN Sbjct: 769 AYGLVSYQTAWLKAHYPAPFMAAVLSTEMDNLDKVVPLIEECRNQGLTVTPPDVNMGSYK 828 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + R+ Y L AI+GVG I+EA AD F L DFC RVD+K+LN+R LE+L Sbjct: 829 FTVDEQGRVVYGLGAIRGVGEGPIGAIVEAREADGAFSDLFDFCRRVDAKRLNKRTLEAL 888 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-----EKG-TFSDKIT 939 + +GALD G +R L+ SL+ K A N ++F E G ++D Sbjct: 889 IRSGALDNLGPTRAVLMASLEAALKAAAQSTTNANLGMMDMFGEAFSEPEAGDAYADYRG 948 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 + +++ + R E+ LG Y +GHP+D Y+ L++ + + RG + R+A Sbjct: 949 VREWTDKE---RLAGEKDTLGLYLTGHPIDEYESELKRF-VSTRIVDLKPQRGESQRVAG 1004 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + K+++G + ++T + EA+ F Sbjct: 1005 LVVAMRTMKSKRGDTMAFITLDDRTGRIEASLF 1037 >gi|315179360|gb|ADT86274.1| DNA polymerase III subunit alpha [Vibrio furnissii NCTC 11218] Length = 1159 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1051 (40%), Positives = 617/1051 (58%), Gaps = 51/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYGTAHGCGVK 63 Query: 69 PIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PI+G + + D L + +L GY+ L L+S YL Sbjct: 64 PIVGADFLVRSEEFGDELT-------------RLTVLAKDNVGYKNLTLLISDAYLRGHV 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + I WL + EGLI+L+G G I RA + + EK + ++ F D Y+ Sbjct: 111 QNQPVIDKEWLIKY-AEGLILLSGAKGGDIGRALLKGNQALVEKCVAFYQTHFTDNFYLE 169 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R R + + LA ELP+VATN+ +F+ + ++AH++ +A+ + Sbjct: 170 LVRTGRADEENYLHFALDLAEQAELPVVATNDVVFIDPDQFDAHEIRVAIHDGYTLEDPR 229 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ + YL++ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + Sbjct: 230 RPKNYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTE----- 284 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 EE L K+ GLE RL + Y +RL+ EL VI +M F GYFLIV Sbjct: 285 GMEETEFLVKKSHEGLEERLEFLFPDPAVRAERRPAYDERLEIELKVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ K+IP Sbjct: 405 DFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKMIP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A + +E AD V L+++ + LEG R+A HA G+VI ++ Sbjct: 465 PDPGMTLE-KAFKAEPALQELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTAIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 524 DFAPIYCDSEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLINPRREKAGEPP 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V + IP D ++ +L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 584 VRIESIPLVDPASFRMLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 644 QSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F SGA NG+ +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKKPEEMAKQRAVFQSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+KTH+P EF+AA MT +MDN EK+ + + + ++PP +N+ F Sbjct: 764 YALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECMRMGLTVLPPDINSGLYRF 823 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V D I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ Sbjct: 824 NVDDTGAIVYGIGAIKGVGEGPIEVILEARNKGGYFKDLFDFCARIDIKKVNKRVIEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKF 943 AGALD G R ++ SLD+ K A + ++F G +D ++ + Sbjct: 884 LAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMF----GVLTDAPEEVERKYI 939 Query: 944 SVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 V V E E+ LG Y +GHP++ Y L K E++ T R ++ +A +V Sbjct: 940 QVPEWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLNEAMPTRRDQSLTVAGLV 999 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + T++G+RIG +T + + E F Sbjct: 1000 IAARVMTTKRGNRIGLMTLDDRSGRMEVMLF 1030 >gi|229588818|ref|YP_002870937.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens SBW25] gi|229360684|emb|CAY47542.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens SBW25] Length = 1173 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1065 (39%), Positives = 620/1065 (58%), Gaps = 65/1065 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A AGI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G +L ++N K P + I LL GY+ L EL+SR ++ Q S+ Sbjct: 64 ICGA--------DLWLSN--KDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ E EGLIML+ G I A + Q AE + ++F DR Y+ +QR Sbjct: 114 IIEREWVAE-ANEGLIMLSAAKEGEIGIALLGGNPQEAEVLAREWMQVFPDRFYLEIQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 +R D V LA PLVATN+ F+ +ED+EAH+ + + + R + Sbjct: 173 NRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKN 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + YLK+ EM +FSDLPEALEN+VEIA+RC+ +++ LP F + I Sbjct: 233 YSEEQYLKSADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RL+ + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLSVLLPKDTTEDYDAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + ++++KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ H + P+L T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 648 GMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ FI G + N I +A NIF+L+ KFA YGFNKSH+AAY Sbjct: 708 DMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R +++ P VN F V Sbjct: 768 LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV 827 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I EA D PF L DFC+RVD K++N+R L+ L+ +G Sbjct: 828 NDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887 Query: 890 ALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----H 929 ALD G +R LL +++ K A+ + + H ++F Sbjct: 888 ALDRLGPYFHDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEE 947 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 + + + + +++ R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 948 DADVYGNHRKAKDLTLKE---RLKGEKDTLGLYLTGHPIDEYEGEIRRFA----RQRIID 1000 Query: 990 IRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A M+++ + K +KG ++G++T + + EA+ F Sbjct: 1001 LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|91204889|ref|YP_537244.1| DNA polymerase III subunit alpha [Rickettsia bellii RML369-C] gi|122426107|sp|Q1RKF9|DPO3A_RICBR RecName: Full=DNA polymerase III subunit alpha gi|91068433|gb|ABE04155.1| DNA polymerase III alpha chain [Rickettsia bellii RML369-C] Length = 1172 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1068 (39%), Positives = 628/1068 (58%), Gaps = 67/1068 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+ SSYS L AL+ I++ ++ + AI +TD NLF +LEF+ A G+QPI Sbjct: 5 FIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGLQPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L+I + + I+L+ GY+ L++L S + + K Sbjct: 65 HGVILNIQYETGV------------FAEILLIAKDETGYKNLLKLSSITFTTNDRKICNH 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L+E EGLI L + G I + N + AE +++FGDR Y + RH Sbjct: 113 ITFEDLKE-HQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHD 171 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ E +++A +PLVATN LF + ++AHDVL+ ++ DR V+ Sbjct: 172 LPEEQLIEDNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDRKTVS 231 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK---ECDDIQKE 306 + Y K+ EM+ +F+DLP A+ENTV + +RC F + P+LP F K E D I+KE Sbjct: 232 ENCYFKSAKEMIELFADLPSAIENTVNLTQRCYFAAHTNPPMLPNFATKDISETDLIRKE 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ L +A L+ + I+ + +Y RLD+ELN+I M F+GYFLIV+DF Sbjct: 292 AKDGL----LARLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSDF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNPDR+SMPDFDIDFC Sbjct: 348 IKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 408 QERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSA 467 Query: 484 AHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAAGIV 533 +PV+L QAI + A + + +L+ S LEGL+RH+STHAAGIV Sbjct: 468 INPVTLEQAIREVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGIV 527 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L ++ Sbjct: 528 IAGTDLVDIVPVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQN 587 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +++D + + FDD +TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LYRPG Sbjct: 588 IEIDFNDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRPG 647 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L AD+L Sbjct: 648 PMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLL 707 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKKIK EM++Q+E F+ GA N IS+ A +IF +AKFA YGFNK+HAAAY VIS Sbjct: 708 RRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFATVAKFAGYGFNKAHAAAYGVIS 767 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831 YQTA++K +YP EF+ A + LE++N +KI F Q+A+ NI+I+ P++N F V Sbjct: 768 YQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKSV 827 Query: 832 ------------------------DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866 D+ I ++L AIKGV + + E +A F S+ Sbjct: 828 IPRLDCGIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSIV 887 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA-QWVEKNRTNKHEN 925 DF R+ K +N ++LE+L+ AG D +R+QL S+ + Y+ + E+ +N+ Sbjct: 888 DFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFSL 947 Query: 926 IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 I + + S +I + + +++ F E +G + S HPL YK I ++ I + Sbjct: 948 I---KVSSLSKEILVSSDYADKNTLAFY-EFEAMGLFISNHPLTEYKEIFNRLNILSSAD 1003 Query: 986 SVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + G N + A V+ K+ + R + S+P +E + F Sbjct: 1004 LHNNLPDGTNRVMIAGVIQKKDSRMSARGRFVTLVLSDPENIFELSIF 1051 >gi|116667751|pdb|2HNH|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E. Coli Replicative Dna Polymerase Iii Length = 910 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/923 (44%), Positives = 581/923 (62%), Gaps = 36/923 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYA 912 A D G R L+ SL + K A Sbjct: 887 AFDRLGPHRAALMNSLGDALKAA 909 >gi|315187035|gb|EFU20792.1| DNA polymerase III, alpha subunit [Spirochaeta thermophila DSM 6578] Length = 1136 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1038 (41%), Positives = 616/1038 (59%), Gaps = 46/1038 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G++ +++ ++ A+A+TD NLF +EF +KA AAG+ PI Sbjct: 6 FVHLHVHSDYSLLDGSIKTGDLVKRVKELGMDAVALTDHGNLFGMIEFYKKARAAGVTPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--------L 122 +GC+ + + + ++LL GY L++LV+ YL + Sbjct: 66 LGCECYVAPESRTLKDQDHAANY----HLILLAENYTGYLNLLKLVTESYLTGFYYKPRI 121 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 D G L EGLI L+ G I A +R ++ +FG DR Sbjct: 122 DDG----------LLAAHHEGLIALSSCLGGEIPSLILGRRIDKARERARFYRDIFGPDR 171 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ H ++ R ++ +V+L+ ++PLVATN+ +L +E EAH+VL+ + + + Sbjct: 172 FYLELQDHGLSEQKRVNKALVELSKELDIPLVATNDVHYLLKEHAEAHEVLLCIGTNKKL 231 Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 S +DR R T + YLK+ EM +F +PEALENTV IA RC+F + P+LP + E Sbjct: 232 SDQDRMRFETQEFYLKSPEEMARLFEGIPEALENTVRIAERCAFEIPFPGPLLPEYHIPE 291 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYF 357 D E LR+ GL+ R YH ++ R+R D EL++I +M F+GYF Sbjct: 292 GFD---SPEAYLRHLTYEGLKKR---------YHQITREIRERADLELSIIIQMGFTGYF 339 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DF+ +AK+ IPVGPGRGSGAGS+ AYAL IT+IDPL++ LLFERFLNP+R+SMPD Sbjct: 340 LIVWDFVHFAKEQGIPVGPGRGSGAGSIVAYALGITNIDPLKYGLLFERFLNPERISMPD 399 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC RR+EVI YV KYG +RVAQIITFG+L+ KA ++DV R L +P+++ + L K Sbjct: 400 FDIDFCYARREEVIDYVTRKYGKDRVAQIITFGTLKPKAVIKDVARVLGIPFAEANELTK 459 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLA--DPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 L+ + A V +AI + R ARLA D + RL +I L+GL RHASTHAAGIVIG Sbjct: 460 LMGD--ASSVE-EAIQREPRL--ARLAEEDETYTRLFQIGSVLQGLSRHASTHAAGIVIG 514 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 L+ VP+YRD ++ TQ++M+ +E GL+K DFLGLKTLTL+ + + + Sbjct: 515 REALTNYVPLYRDPKTGDISTQYSMEHLEDCGLVKMDFLGLKTLTLITHTEELVRTHTPD 574 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 D IP DD +T+ LL + +FQ ES GM+ L +P+ IE++IAL +LYRPGP+ Sbjct: 575 FDTERIPEDDAQTFQLLAEGKSTCVFQFESEGMQNILRRAKPESIEELIALNALYRPGPM 634 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + K G+ KI HP ++P+LKET GVI+YQEQVMQIAQ ++GY+L AD+LRR Sbjct: 635 QFIDQFIEAKQGRRKITYPHPDLEPILKETYGVIVYQEQVMQIAQKIAGYTLGGADILRR 694 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK E M K+KE+FI GA G S+ A +FELL FA YGFNKSHAAAY+V++Y+ Sbjct: 695 AMGKKKPEVMAKEKEKFIKGAVAQGYSRQFAEELFELLIPFAGYGFNKSHAAAYSVLAYK 754 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYP EF+AA++T E+ N +K+ ++ + R I+++PP +N F V D +I Sbjct: 755 TAYLKAHYPAEFMAANLTNEIGNPDKLAQYIGETRAMGIEVLPPDINASERYFTVRDGKI 814 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L IK VGT I+ + PF S DF RVD + +NR+V+E+ + AG D Sbjct: 815 VYGLVGIKNVGTAAVEEILGKRKEGPFTSFIDFLFRVDLRTVNRKVIETCIQAGVFDSLH 874 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R +L+ +L+ + + +++ + +F + ++ ++ + E Sbjct: 875 PNRAELMHNLEALLAHVNRIKEQQEASQGFLFEETETQIREEFQFTPVEDWDTMEKLRYE 934 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + +LGFYFS HPLD + I K T +L ++ + ++ T+KG+R+ Sbjct: 935 RELLGFYFSSHPLDHLREIWEKGVNLDLSHPERTDPSRTYQLMGVLKTVREITTQKGNRM 994 Query: 1016 GWVTFSEPAKEYEANFFP 1033 + T + EA FFP Sbjct: 995 AFGTIEDYRGSIEAVFFP 1012 >gi|157827786|ref|YP_001496850.1| DNA polymerase III subunit alpha [Rickettsia bellii OSU 85-389] gi|157803090|gb|ABV79813.1| DNA polymerase III subunit alpha [Rickettsia bellii OSU 85-389] Length = 1172 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1068 (39%), Positives = 628/1068 (58%), Gaps = 67/1068 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+ SSYS L AL+ I++ ++ + AI +TD NLF +LEF+ A G+QPI Sbjct: 5 FIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGLQPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L+I + + I+L+ GY+ L++L S + + K Sbjct: 65 HGVILNIQYETGV------------FAEILLIAKDETGYKNLLKLSSITFTTNDRKICNH 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L+E EGLI L + G I + N + AE +++FGDR Y + RH Sbjct: 113 ITFEDLKE-HQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHD 171 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ E +++A +PLVATN LF + ++AHDVL+ ++ DR V+ Sbjct: 172 LPEEQLIEDNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDRKTVS 231 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK---ECDDIQKE 306 + Y K+ EM+ +F+DLP A+ENTV + +RC F + P+LP F K E D I+KE Sbjct: 232 ENCYFKSAKEMIELFADLPSAIENTVNLTQRCYFAAHTNPPMLPNFATKDISETDLIRKE 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ L +A L+ + I+ + +Y RLD+ELN+I M F+GYFLIV+DF Sbjct: 292 AKDGL----LARLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSDF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNPDR+SMPDFDIDFC Sbjct: 348 IKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 408 QERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSA 467 Query: 484 AHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAAGIV 533 +PV+L QAI + A + + +L+ S LEGL+RH+STHAAGIV Sbjct: 468 INPVTLEQAIREVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGIV 527 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L ++ Sbjct: 528 IAGTDLVDIVPVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQN 587 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +++D + + FDD +TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LYRPG Sbjct: 588 IEIDFNDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRPG 647 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L AD+L Sbjct: 648 PMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLL 707 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKKIK EM++Q+E F+ GA N IS+ A +IF +AKFA YGFNK+HAAAY VIS Sbjct: 708 RRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFVTVAKFAGYGFNKAHAAAYGVIS 767 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831 YQTA++K +YP EF+ A + LE++N +KI F Q+A+ NI+I+ P++N F V Sbjct: 768 YQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKSV 827 Query: 832 ------------------------DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866 D+ I ++L AIKGV + + E +A F S+ Sbjct: 828 IPQLDRSIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSIV 887 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA-QWVEKNRTNKHEN 925 DF R+ K +N ++LE+L+ AG D +R+QL S+ + Y+ + E+ +N+ Sbjct: 888 DFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFSL 947 Query: 926 IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 I + + S +I + + +++ F E +G + S HPL YK I ++ I + Sbjct: 948 I---KVSSLSKEILVSSDYADKNTLAFY-EFEAMGLFISNHPLTEYKEIFNRLNILSSAD 1003 Query: 986 SVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + G N + A V+ K+ + R + S+P +E + F Sbjct: 1004 LHNNLPDGTNRVMIAGVIQKKDSRMSARGRFVTLVLSDPENIFELSIF 1051 >gi|33519751|ref|NP_878583.1| DNA polymerase III, alpha chain [Candidatus Blochmannia floridanus] gi|33504096|emb|CAD83357.1| DNA polymerase III, alpha chain [Candidatus Blochmannia floridanus] Length = 1166 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1048 (40%), Positives = 634/1048 (60%), Gaps = 73/1048 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P+FVHL V S YS+++G N +L+K + PA+A+TD +NLF ++F +C GI Sbjct: 2 NPNFVHLHVRSDYSMIDGLSKTNALLEKAVSLNMPALALTDFSNLFGFIKFYDYSCKLGI 61 Query: 68 QPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +PI G D +QD + N K + LV +GYQ L+EL+SR Y Sbjct: 62 KPIAGA--DFLIQDISCYSDNWSK--------LTCLVLNNQGYQHLVELISRAYKYKSNT 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I SWL E EGLI+L+GG G I + N EK LL + K F +R Y+ L Sbjct: 112 NYPIIQRSWLMEY-NEGLILLSGGCDGDIGKYLLRNKRNDIEKTLLFYHKYFPNRYYIEL 170 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KD 244 R R ++ V+L+ LP+VATN+ F+ ++D++AH++ +A+ VV++ + Sbjct: 171 IRTGRVHEESYLKLAVELSRIKGLPVVATNDVRFVEKKDFQAHEIRVAIHAGVVVNKIQQ 230 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + + ++K+ EM +F+D+PE+L NTVEIA+RC+F++ P LP+F Sbjct: 231 SNKYSAQQFMKSSQEMCHLFNDIPESLVNTVEIAQRCNFMINFKGPFLPKFPTGSL---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 EN L +A GLE RL + + Y RL+ EL VI +M F GYFLIV Sbjct: 287 -STENFLVTQARLGLEKRLKFLFPNSKERQVKRSVYDIRLNQELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K NNIPVGPGRGSGA S+ AY L IT++DP++F LLFERFLNP+R+SMPD DID Sbjct: 346 EFIQWSKDNNIPVGPGRGSGASSLVAYVLRITELDPIKFDLLFERFLNPERISMPDLDID 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RD VI +V YG V+QIITFG++ AKAA+RDVGRAL PY V+RL KLIP Sbjct: 406 FCMEHRDLVIDHVAQMYGSHAVSQIITFGTMAAKAAIRDVGRALGYPYVFVNRLAKLIPL 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 +P + +A ++ + D V L+++S +LEG+ R+ S HA G+VI ++ Sbjct: 466 EPGMTLR-KACTTINQLKLMYNTDEEVKILIDLSYQLEGIIRNVSKHAGGVVIAPNKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + +TQF+ IE+ GLIKFDFLGL+TLT + +++ + R K Sbjct: 525 FSPLYYDDNYNHSMTQFDKDDIERIGLIKFDFLGLRTLTTVNRAIKMINDRKSKSNSLIC 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 +++LIP +D ++ LL T T GIFQLES G++ ++ ++PD ED+IAL++L+RPGP+ Sbjct: 585 NINLIPLNDRNSFRLLQTAKTTGIFQLESKGIKMLIKRLKPDHFEDLIALIALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKIVSI------HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N NRKNG+E I+S H L+ P+LK T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 645 SGMVDNFINRKNGRE-IISYPDVKWEHELLKPVLKSTYGIILYQEQVMQIAQVLAGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 +AD+LRRA+GKK E+M KQ+ F +GA +NGI++T++ IF+L+ KFA YGFNKSH+AA Sbjct: 704 KADILRRAIGKKKYEDMVKQRAIFNAGAQRNGINQTLSKKIFDLMEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+ISYQT W+K HYP EF+A+ ++ +MDNV +I + R+ ++++ P++N+ F Sbjct: 764 YALISYQTLWLKAHYPAEFMASILSSDMDNVNRIIILIHECRRMGLKVLSPNINSSRYFF 823 Query: 829 KVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V +N+ I Y + AIKG+G + I+ + D F SL DFC RVD+ K+N+R++E L+ Sbjct: 824 YVNNNQEIVYGIGAIKGIGKLSIDSIVASRDCDGEFHSLFDFCVRVDNSKVNQRIIEKLI 883 Query: 887 FAGALDCFGYSRMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------- 938 ++GA D FG R +L+ SL+ I + Q+ ++ + + G F D I Sbjct: 884 YSGAFDFFGIHRSELISSLNVTICQAIQYAKRKQ--------CQQIGIFEDDIQEHTIVD 935 Query: 939 TLEKFSV-----ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-- 991 T+ K + +NS + E+ LG Y + HP++ Y +K Y ++ I+ Sbjct: 936 TIPKCNSVIKLHQNSLIILTKEKEALGLYLTDHPVNQYMN-----EVKQYIPEISKIQNV 990 Query: 992 ------GNNIRLAAMVVSKQQKKTRKGS 1013 N + ++ S K T+KG+ Sbjct: 991 LRKIVINNTVCTFGLLSSIHIKSTKKGN 1018 >gi|82703844|ref|YP_413410.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC 25196] gi|82411909|gb|ABB76018.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC 25196] Length = 1174 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1045 (40%), Positives = 626/1045 (59%), Gaps = 54/1045 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F+HL++HS YS+++G + ++ + K A+ PA+A+TD +NLF ++F Q+A G++P Sbjct: 6 TFIHLRLHSEYSVVDGIVRIDEAVAKAVAEGMPALALTDLSNLFGLIKFYQEARNKGLKP 65 Query: 70 IIGCQL----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 I+GC + DID + + I+LL + GY L L+SR Y +Q Sbjct: 66 IVGCDVWISNDIDRDKSFR--------------ILLLCQSYPGYLALCRLLSRAYRENQY 111 Query: 126 KQSVRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + I SWL ++GTEGLI L+G + G I A N A + +LF R Y Sbjct: 112 RGRAEIRKSWLSASDLGTEGLIALSGANLGDIGLALIHNDLDQARTLAQEWTELFPGRFY 171 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHEL----PLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 + +QR +VQ + P+VAT+ +L+ EDY AH+ + ++ V Sbjct: 172 IEVQRA---GHANAEALVQRSLALAAALRLPVVATHPVQYLNPEDYRAHEARVCISQGYV 228 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + + RPR T + Y K ++EM ++F+D+P AL NT+EIARRC+ L++ LP+F Sbjct: 229 LGDRRRPRHCTEEQYFKTQAEMSALFADIPSALANTMEIARRCNLALELGINRLPQFPTP 288 Query: 299 ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + + LRN+A GLE R L + YR RLDFE + I +M F+G Sbjct: 289 NNESL----DLYLRNQASTGLEKRMRALFPDPDRRAAEMPKYRARLDFEADTIVQMGFAG 344 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK+N++PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SM Sbjct: 345 YFLIVADFINWAKQNDVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVSM 404 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQD R+ VI YV+ KYG E V+QI TFG++ AKA +RDVGR L +PY+ VD+L Sbjct: 405 PDFDIDFCQDGREHVIEYVKQKYGAESVSQIATFGTMAAKAVVRDVGRVLDLPYNFVDQL 464 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KL+P + + +A ++ + + A+ V LLE++++LEGL R+ HA G++I Sbjct: 465 AKLVPFELGMTLK-KAREEEPQLNQRAEAEEEVRNLLELAERLEGLTRNVGMHAGGVLIA 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV- 594 ++ P+Y + V+Q + +EK GL+KFDFLGL+TLT+L S+ ++ QR Sbjct: 524 AGKITDFCPVYCADGGESVVSQLDKDDVEKVGLVKFDFLGLRTLTILDWSVRYIRQRKSG 583 Query: 595 ---------KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 L +P DD +TY L+ +GIFQ ES GM+ L+ +PD ED+IA Sbjct: 584 NTGNDSETRSFSLENLPLDDPDTYALMRQGNAVGIFQFESRGMKDLLQKARPDRFEDLIA 643 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 LV+LYRPGP+ I + RK+GK + + P + P+L+ T G+++YQEQVMQIAQ++ GY Sbjct: 644 LVALYRPGPMSLIPEFIERKHGKRVVEYLDPRLKPILEPTYGIMVYQEQVMQIAQVIGGY 703 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL AD+LRRAMGKK EEM Q++ F+SGA KNG+++ A +F+L+ KFA YGFNKSH Sbjct: 704 SLGSADLLRRAMGKKKPEEMALQRDIFVSGAVKNGLTEGDAAELFDLMEKFAGYGFNKSH 763 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 AAAYA+I++QTA++K HYP EF++A+++ +MD+ +K+ F +D+ + ++PP +N Sbjct: 764 AAAYALIAFQTAYLKAHYPSEFMSATLSADMDDTDKVHIFFEDSIANGLAVLPPDINLSG 823 Query: 826 VDF-KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V + I Y L AIKG G + I++A F L DFC RVD + +NRRV+E Sbjct: 824 YRFVPVDEKTIRYGLGAIKGTGESAIAAIIQAREQGGAFSDLFDFCHRVDKRIVNRRVVE 883 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 SL+ AGA D R LL S+ + A+ E R+ ++F E G ++ L K Sbjct: 884 SLIRAGAFDAIDTHRAALLASVGIALESAEQAE--RSVNQVSLFGEEMGVI-ERPALVKV 940 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 V +NE+ LG Y SGHP + Y+ L ++ + R + LA +V + Sbjct: 941 PVWPEKETLKNEKLALGLYLSGHPFNAYREELNHF-VRTRLNRLVPQREPQL-LAGIVYA 998 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + TR+G R+G + + + + E Sbjct: 999 IRTQVTRRG-RMGVIVLDDGSNQVE 1022 >gi|330985125|gb|EGH83228.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1173 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + +F +R Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEDPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|71733672|ref|YP_275963.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487067|ref|ZP_05641108.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626019|ref|ZP_06458973.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651464|ref|ZP_06482807.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi str. 2250] gi|71554225|gb|AAZ33436.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323105|gb|EFW79194.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea str. B076] gi|320329623|gb|EFW85612.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea str. race 4] gi|330868557|gb|EGH03266.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331009298|gb|EGH89354.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1173 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + +F +R Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|330968945|gb|EGH69011.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1173 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPG + + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGLLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTNKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++R + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|33151745|ref|NP_873098.1| DNA polymerase III subunit alpha [Haemophilus ducreyi 35000HP] gi|33147966|gb|AAP95487.1| DNA polymerase III alpha subunit [Haemophilus ducreyi 35000HP] Length = 1158 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1053 (40%), Positives = 626/1053 (59%), Gaps = 56/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S++ G + ++ AA Q A+A+TD +N ++F ++ AG++ Sbjct: 4 PRFVHLKVHSDFSMINGLAKVKALVKTAAAKQMAAMALTDFSNFCGLVKFYGESLTAGLK 63 Query: 69 PIIGCQL----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 PIIG + D +D ++T LL +GY + L+SR Y Q Sbjct: 64 PIIGADIYVRSDPTSEDIFELT--------------LLAKNNQGYHNITVLLSRAY--QQ 107 Query: 125 GKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G I +WL E+ EG+I+L+GG SG + +A + Q A + +++ F D Y Sbjct: 108 GYVEFPIVEKAWLAEL-NEGIIVLSGGRSGDVGKALLKENEQEAATLVAFYQQYFADHYY 166 Query: 184 VNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 ++L R D R Q VQ A ++LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 167 LSLCRTGRSDEERYLQQAVQFAKKYQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDD 226 Query: 243 KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP + +P Y ++ EM ++F+DLP+AL N+++IA RC+ +++ LP F E Sbjct: 227 PKRPQKYSPQQYFRSEEEMCALFADLPQALMNSIQIAMRCNVTIRLGEYFLPNFPTGEL- 285 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA A + Y +RL EL+VI +M F GYFL Sbjct: 286 ----STEDFLIKKSQEGLEERLAFLFPDAETRKNKRSVYDERLQVELDVINQMGFPGYFL 341 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDF Sbjct: 342 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERISMPDF 401 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KL Sbjct: 402 DVDFCMDGRDHVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKL 461 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 462 IPADPGMTLA-KAFEAEPKLPELYNADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTA 520 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR + Sbjct: 521 ITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLTREGK 580 Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + + IP DD ++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPG Sbjct: 581 PPIRIENIPLDDKPSFKLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPG 640 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+++ +V N +RK+G E++ H + P+L+ T G+I+YQEQVMQIAQ L+GY+ Sbjct: 641 PLESGMVQNFIDRKHGIEEVSYPDAQYQHECLKPILEPTYGIIVYQEQVMQIAQELAGYT 700 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM Q++ F GA + GI +A+ IF+L+ KFA YGFNKSH+ Sbjct: 701 LGSADLLRRAMGKKKPEEMAAQRDIFEKGAIEKGIDGQLAIKIFDLVEKFAGYGFNKSHS 760 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+K HYP EF+AA MT EMDN +KI + + ++PP VN+ Sbjct: 761 AAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECINMGLTVVPPDVNSGKH 820 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V + +I Y L AIKGVG I+EA + F L D +RVD KK+NRR ES Sbjct: 821 RFSVNEKGQIVYGLGAIKGVGEGPIEAILEARNKGGIFKDLFDLTARVDLKKINRRTFES 880 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L+++L++ K + K ++F G ++ + + Sbjct: 881 LIMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMF----GVLTETPEQVQKA 936 Query: 945 VENS-----SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 N+ E E+ LG Y SGHP+ + L E T RG + +A Sbjct: 937 YANTPKWSEQAVLEGERTTLGLYLSGHPIGRFLKELAHYAPTRLNELQPTRRGQMVTVAG 996 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++V+ + T++GSR+G T + A + + F Sbjct: 997 IIVASRIAVTKRGSRLGIATLEDRAGKIDITLF 1029 >gi|28868755|ref|NP_791374.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato str. DC3000] gi|28851994|gb|AAO55069.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000] Length = 1173 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1067 (39%), Positives = 623/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + +F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLTVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+++ D+EAH+ + + + R Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALEN+VEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E+++KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|330878150|gb|EGH12299.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea str. race 4] Length = 1154 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + +F +R Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|325982112|ref|YP_004294514.1| DNA polymerase III, alpha subunit [Nitrosomonas sp. AL212] gi|325531631|gb|ADZ26352.1| DNA polymerase III, alpha subunit [Nitrosomonas sp. AL212] Length = 1167 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1045 (41%), Positives = 627/1045 (60%), Gaps = 54/1045 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+F+HL++HS YS+L+ + +++++ K ADQ PA+A+TD NLF ++F Q A GI+ Sbjct: 5 PAFIHLRMHSEYSILDSTIRIHDVVKKAVADQMPALALTDLANLFGLVKFYQAAYKNGIK 64 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GC ++ + N+ P +++L T GY L L+SR Y +Q + Sbjct: 65 PILGC--------DIWIANESDRSKPI--RLLVLCQTHAGYLLLSRLLSRAYRENQFQNR 114 Query: 129 VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I SWLQ + GTEGLI L+G G I + N+ AE ++ + LF DR Y+ + Sbjct: 115 AEIKESWLQPDDWGTEGLIALSGARLGDIGLSLLQNNILQAEIQVQKWATLFPDRFYLEI 174 Query: 187 QRHRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 QR E+ +VQ LA LP+VAT FL+ EDY+AH+ + +A ++ Sbjct: 175 QRD---GHANEAMLVQHSLALAKKFNLPVVATQAVQFLNVEDYQAHEARVCIAEGYILED 231 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 K R + T Y K ++EM +F+D+P AL NT+EIA+RC+ IL++ LP F + Sbjct: 232 KRRQKNFTQQQYFKTQTEMTQLFADIPAALTNTIEIAKRCNLILELGVNRLPLFPTPNNE 291 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + + LR++A GL R+ A + Y+ RL+FE+N I +M F+GYFL Sbjct: 292 SL----DQYLRSQAELGLIKRMTSLFPDAEMRNDRITQYQSRLEFEVNTIIQMGFAGYFL 347 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFI WAK NN+PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDF Sbjct: 348 IVADFINWAKHNNVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERISMPDF 407 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFCQDRR+ VI YV+ +YG +V+QI TFG++ AKA +RD+GR + +PY+ VD+L KL Sbjct: 408 DIDFCQDRRELVIEYVKQRYGIGKVSQIATFGTMAAKAVIRDIGRVMDLPYNFVDQLAKL 467 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + ++L+ R + V LLE+++ LEG+ R+ HA G++I Sbjct: 468 IPFEIG--MTLKKARQLEPQLNQRAEEEDVRNLLELAESLEGITRNVGMHAGGVLIASSE 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD- 597 ++ P+Y D V+Q + +EK GL+KFDFLGL+TLT+L +++ ++ Q +D Sbjct: 526 ITDFCPIYCTESGDSVVSQLDKDDVEKIGLVKFDFLGLRTLTILDRAVGYIRQLHPNIDS 585 Query: 598 -------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 L +P DD TY L+ +GIFQ ES GM L+ +PD EDIIALV+LY Sbjct: 586 PESRLFSLETLPLDDDATYALMRKGNAVGIFQFESRGMIDLLQKAKPDHFEDIIALVALY 645 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + +RK+G+++I + P ++P+L T G++IYQEQVMQIAQ++ GYSL A Sbjct: 646 RPGPMDLIPEFIDRKHGRKQIEYLDPRLEPILGPTYGIMIYQEQVMQIAQVIGGYSLGSA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM +Q++ F+SGA NG+S+ A +F L+ KFA YGFNKSHAAAYA Sbjct: 706 DLLRRAMGKKKVEEMAQQRDIFVSGAINNGLSEDKATELFGLMEKFAGYGFNKSHAAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-K 829 +I++QTA++K HYP EF+AA ++ +MD+ +K+ F +D+ I I+PP +N F Sbjct: 766 LIAFQTAYLKAHYPAEFMAACLSADMDDTDKVHIFVEDSIANGIIILPPDINLSDYRFIP 825 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V I + L A+KG G + I+ PF L DFC+RVD + NRRV+ESL+ Sbjct: 826 VDSKNIRFGLGAVKGTGESAVNSIIAVRRQTGPFTDLFDFCNRVDRRIANRRVMESLIRV 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R L+ S+ + A+ + ++++ N+F + L + + Sbjct: 886 GAFDIINPNRASLMASVGLAIESAE--QTSQSSNQINLFGETSSDAQMQPQLIQAESWHD 943 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E+ LG+YFSGHP D Y L+ I + + R + LA ++ S + + Sbjct: 944 REKLHQEKIGLGYYFSGHPFDTYASELKHF-ICTRLDRLNPQREPQL-LAGIIHSIRTQM 1001 Query: 1009 TRKG-----------SRIGWVTFSE 1022 TR+G +RI V FSE Sbjct: 1002 TRRGKMGVINLDDGKARIEVVIFSE 1026 >gi|213969133|ref|ZP_03397272.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato T1] gi|301383972|ref|ZP_07232390.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato Max13] gi|302064142|ref|ZP_07255683.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato K40] gi|213926131|gb|EEB59687.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato T1] Length = 1173 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1067 (39%), Positives = 623/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + +F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLAVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+++ D+EAH+ + + + R Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALEN+VEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E+++KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|270264805|ref|ZP_06193069.1| DNA polymerase III, alpha subunit [Serratia odorifera 4Rx13] gi|270041103|gb|EFA14203.1| DNA polymerase III, alpha subunit [Serratia odorifera 4Rx13] Length = 1183 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1058 (41%), Positives = 625/1058 (59%), Gaps = 49/1058 (4%) Query: 3 QYLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 +YL+ + P F+HL+VHS YS+++G + ++ + AA PA+AITD NL ++F Sbjct: 18 RYLDMAEPRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGS 77 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 A AGI+PIIG + Q + + + +L + +GYQ L L+SR Y Sbjct: 78 AHGAGIKPIIGADFHV----------QSEVLGDELAQLTVLAANNDGYQNLTLLISRAYQ 127 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 G I WL E EGLI+L+G G + + + Q ++ L +++ F D Sbjct: 128 RGYGAAGPIIDRDWLIE-HREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQQYFPDS 186 Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ L R R + V LA LP+VATN+ FL E+D++AH++ +A+ + Sbjct: 187 YYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTL 246 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 RPR + Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ LP+F Sbjct: 247 DDPKRPRNYSTQQYMRSADEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQF---P 303 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGY 356 D+ E+ L++K GLE RL AQ +Y +RLD EL VI +M F GY Sbjct: 304 TGDMTTEDFLVLKSKE--GLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGY 361 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMP Sbjct: 362 FLIVMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 421 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 422 DFDVDFCMEKRDLVIEHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 481 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KL+P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 482 KLVPPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAP 540 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 541 TKITDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKS 600 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+R Sbjct: 601 GLEPIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFR 660 Query: 652 PGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+G Sbjct: 661 PGPLQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAG 720 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EM KQ+ F GA GI ++V IF+L+ KFA YGFNKS Sbjct: 721 YTLGGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKS 780 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 781 HSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSG 840 Query: 825 CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRR 880 F V D I Y + AIKGVG I+EA F L D C+R D KKLNRR Sbjct: 841 QYHFHVNDEGEIVYGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDVKKLNRR 900 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 +LE L+ +GA D G R L+ SL + K A K ++F G ++ Sbjct: 901 ILEKLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMF----GVLAEAPEQ 956 Query: 941 EKFSVEN-----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNN 994 + S N V + E+ LG Y +GHP+ Y K I R G + ++ T RG Sbjct: 957 VEQSYANVPRWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKM 1016 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG T + + E F Sbjct: 1017 TTAVGLVIASRVMVTKRGNRIGICTLDDRSGRLEVMLF 1054 >gi|157376278|ref|YP_001474878.1| DNA polymerase III subunit alpha [Shewanella sediminis HAW-EB3] gi|157318652|gb|ABV37750.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 1157 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1048 (40%), Positives = 616/1048 (58%), Gaps = 46/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + I+ K+ PA+A+TD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMSDGLAKVKPIIGKVTELGMPAVALTDQTNLCGLVKFYGACHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P+IG + + K + S+ +L +GY L L+S YL Sbjct: 64 PLIGADFWVKVPGFDK----------DLCSVTVLAMDNDGYLNLTLLISDAYLRGHIDDR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + ++GLI+L+GG G + RA + + + ++ F DR Y+ L R Sbjct: 114 AVIDHGWLAKY-SKGLILLSGGRLGDVGRALLKGNQAQVDSLVEFYQTHFPDRYYLELLR 172 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D R + V+LA LP+VATN +F S + +EAH++ +A++ ++ RP+ Sbjct: 173 TGRPDEERYLHMAVELATEKGLPVVATNQVVFNSPDLFEAHEIRVAISDGFTLADPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + Y K+ +M +F D+PEA++NTVEIA+RC+ +++ LP F + Sbjct: 233 KYSAEQYFKSSEQMCELFEDIPEAIDNTVEIAKRCNVTVRLGEYFLPNFPTGDL-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L + GLE RL + Y +RLD EL V+ +M F GYFLIV +F Sbjct: 288 IEDFLVEVSEKGLEERLEFLFPDPEVRAEKRPAYDERLDVELKVVNQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW K +IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 348 IQWGKDQDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K++P +P Sbjct: 408 MDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + +E+ AD V L+++ + LEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEVEPALQESYDADEEVKDLIDMCRTLEGVTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + + V + Sbjct: 527 PIYCDAEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKLKRLGKDPVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 ESIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N RK+G+E + H + +L+ T G+I+YQEQVMQIAQ+L+GYSL AD Sbjct: 647 MVDNFIERKHGREAVSYPDAEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NGI +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+AA M+ +MDN +KI + + + ++PP VN + F V Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGMPLLPPDVNKGLLKFNVD 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 D +I Y + AIKGVG I+ A D PF L DFC+RVD KKLN+R++E L+ AGA Sbjct: 827 DEGKIVYGIGAIKGVGDGPVESILSARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGA 886 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVENS 948 LD G R +L +L + A ++ K E I H+ SD +++ VE + Sbjct: 887 LDNLGPHRAAMLATLPEAIRAA-----DQNAKAEAIGQHDMFGLLNSDPEDVKQQFVECT 941 Query: 949 ----SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ Sbjct: 942 PWPDKVWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVAT 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GS++G VT + + E F Sbjct: 1002 RVMMTKRGSKMGLVTLDDKSARLEVMLF 1029 >gi|330894609|gb|EGH27270.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. mori str. 301020] Length = 1173 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1067 (39%), Positives = 621/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+ +TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVGVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AG +KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGRVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|291086159|ref|ZP_06354987.2| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220] gi|291068957|gb|EFE07066.1| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220] Length = 1144 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1043 (40%), Positives = 616/1043 (59%), Gaps = 60/1043 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDID--- 78 +++G ++ K AA PA+AITD NL ++F AGI+PI+G + Sbjct: 1 MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFHVRSEL 60 Query: 79 MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138 + D L + +L + GYQ L L+S+ Y G + I WL E Sbjct: 61 LGDELT-------------QLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDWLVE 107 Query: 139 IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE- 197 + EGLI+L+GG G + R+ +S + ++ + +++ F + ++ L R D Sbjct: 108 L-KEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNSYFLELIRTGRQDEENYL 166 Query: 198 SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKN 256 V+LA T LP+VATN+ FL D++AH++ +A+ + RPR + Y+++ Sbjct: 167 HAAVELAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMRS 226 Query: 257 RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316 EM +FSD+PEAL+NTVEIA+RC+ +++ LP+F + E+ L K+ Sbjct: 227 EEEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDFLVAKSK 281 Query: 317 AGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373 GLE RL + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +P Sbjct: 282 EGLEQRLEFLFPDPEERAKRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNGVP 341 Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433 VGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI + Sbjct: 342 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 401 Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493 V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP ++ +A Sbjct: 402 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFE 460 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 + + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D + Sbjct: 461 AEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLH 520 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHET 608 PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D++ IP DD ++ Sbjct: 521 PVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKS 580 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKN 666 + +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+ Sbjct: 581 FDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 640 Query: 667 GKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 G+E+I H + P+L+ T G+I+YQEQVMQIAQ LSGY+L AD+LRRAMGKK Sbjct: 641 GREEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKK 700 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EEM KQ+ F GA K G+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K Sbjct: 701 PEEMAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 760 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLA 840 HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D+ I Y + Sbjct: 761 HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIG 820 Query: 841 AIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIKGVG I+EA + F L D C+R D KKLNRRVLE L+ +GA D G R Sbjct: 821 AIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRA 880 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SV 950 L+ SL + K A K ++F G ++ E +E S V Sbjct: 881 ALMNSLSDALKAADQHAKAEAIGQADMF----GVLAE----EPEQIEQSYASCQPWPEQV 932 Query: 951 RFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + E+ LG Y +GHP++ Y K I R +G ++ T RG A +V++ + T Sbjct: 933 VLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVT 992 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 ++G+RIG T + + E F Sbjct: 993 KRGNRIGICTLDDRSGRLEVMLF 1015 >gi|78357239|ref|YP_388688.1| DNA polymerase III subunit alpha [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219644|gb|ABB38993.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 1165 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1044 (40%), Positives = 630/1044 (60%), Gaps = 37/1044 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL H+ YSLL+GA+ L ++ +K A+AITD N++ A+ F Q A G++ Sbjct: 2 PQFVHLHCHTEYSLLDGAIRLKDLCEKAKEFDMSAVAITDHGNMYGAVYFYQMAQKMGLK 61 Query: 69 PIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGC++ + D+ K + K + +VLL GY L +LV+R + + Sbjct: 62 PIIGCEVYVAHGDHTDKTGDMAKKRY----HLVLLAQNRTGYHNLAKLVTRGFT-EGFHY 116 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ L++ +EG+I L+ +G I RA A + + +++ DR Y+ +Q Sbjct: 117 KPRVSKDLLRQY-SEGIIALSACLAGEIPRALLNEGMDRAIELAREYAEIYPDRFYLEVQ 175 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 + G E ++++LA LPLVATN+ +L + D EAHD L+ + V+ + R Sbjct: 176 SN-GLKEQDELNDKLIELAGITGLPLVATNDCHYLEKTDVEAHDTLLCIQTGAKVTDERR 234 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T + Y K+ EM + F+ +PEA+ENTV+IA + L + P + E + Sbjct: 235 MRFETTELYYKSPDEMAAAFAHVPEAIENTVKIAGQIDVTLDLGNYYFPNYELPEGMTL- 293 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E+E R + GL+ RL Y QRL+ EL+VI M F GYFLIV DFI Sbjct: 294 ---EDEFRKLSHEGLQKRLEILPYRDQIDEPAYWQRLEKELDVICSMGFPGYFLIVQDFI 350 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK N IPVGPGRGS AGS+ A+AL IT++DP+ ++LLFERFLN +R+SMPD D+DFC+ Sbjct: 351 NWAKDNKIPVGPGRGSAAGSIVAWALKITNLDPIPYNLLFERFLNNERVSMPDIDVDFCE 410 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR EVI+YV KYG + VAQI TFG ++AKA +RDV RAL + + DR+ KLIP D Sbjct: 411 RRRGEVIQYVGRKYGEDSVAQITTFGKMKAKAVVRDVARALGLSFQDGDRIAKLIPEDLK 470 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ + + DP + +LL+IS +LEGL RHASTHAAG+VI D+P+ + +P Sbjct: 471 MTIK-KALDMEPDLKTLYTNDPQIRKLLDISMRLEGLSRHASTHAAGVVISDKPMFEYLP 529 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPF 603 +YRD + + VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD +A +G+ DL + Sbjct: 530 LYRDKKGGI-VTQFDMKIVEKVGLVKFDFLGLRTMTLVQDALDLIAMQGLTPPDLDTMSL 588 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 +D ETY L + T G+FQ+ESSGMRQ L ++P C +D+IA+++LYRPGP+ + +V + Sbjct: 589 EDKETYELYSRGETDGVFQVESSGMRQYLRMLRPSCFDDVIAMLALYRPGPLGSGMVDEF 648 Query: 662 NNRKNGKEKIVSIHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 RK+G ++ +PL + L++T GVI+YQEQVMQIAQ+++ Y+L AD+LRRAMGK Sbjct: 649 IKRKHG--EVAVTYPLESLKDCLRDTYGVIVYQEQVMQIAQIVANYTLGGADLLRRAMGK 706 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K E M +++ +F GA +N + + A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++ Sbjct: 707 KNAEAMAEERIKFTKGAKENNVPEAKATEIFDLMEKFAEYGFNKSHSAAYALISYYTAYL 766 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYPVEF+AA MT EM+N EK+ K+ + ++++ P+V +F V D ++ Y L Sbjct: 767 KVHYPVEFMAALMTSEMNNQEKVLKYVACCKDMGVEVLAPNVQISRREFSVLDGKVTYGL 826 Query: 840 AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK VG R I+ A D PF S+ D C RV+ +K+ +RVLE+L+ +GA DC G +R Sbjct: 827 GGIKNVGDEAIREIVRAREEDGPFQSMLDLCMRVNLRKVTKRVLENLIKSGACDCLGCTR 886 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---------GTFSDKITLEKFSVENSS 949 ++ LD + AQ K + + ++F+ + G + ++E++ E Sbjct: 887 QGMVAGLDTVVARAQKKAKEKASNQISMFSVMEQEPQTCPGLGFDCPEQSMEEWDDEE-- 944 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + E+ LGFY S HPL Y+ + ++ + E+ + + A +V S ++ T Sbjct: 945 -KLRKEKEALGFYLSSHPLQPYRKEIFRLRLTPLEDCREMGPEQSFKSAVLVTSIKEILT 1003 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 +KG R+ + + E FFP Sbjct: 1004 KKGHRMAFCQVEDLTASGECIFFP 1027 >gi|209695836|ref|YP_002263766.1| DNA polymerase III subunit alpha [Aliivibrio salmonicida LFI1238] gi|208009789|emb|CAQ80096.1| DNA polymerase III, alpha chain [Aliivibrio salmonicida LFI1238] Length = 1159 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1050 (40%), Positives = 618/1050 (58%), Gaps = 53/1050 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +SL++G + ++ K+A PA+ +TD NL +++ A AGI+PI Sbjct: 6 FVHLRVHSDFSLIDGLSKVPPLVKKMAELNMPAMGLTDFTNLCGLVKYYFAAHGAGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + T G F ++ +L EGY+ L L+S+ YL + + Sbjct: 66 IGADFKV------QSTEFGNELF----NLTVLAKNNEGYKNLTLLISKAYLRGHVQHTPV 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + WL E EGLI+L+G +G + +A + ++ + + +K F D Y+ L R Sbjct: 116 MDKEWLIE-HKEGLIILSGAKNGDVGKALLKGNQELVNECVDFYKTYFPDHYYLELIRTG 174 Query: 191 GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D V LA LP+VATN+ F+ +D++AH++ +A+ + RP+ Sbjct: 175 RVDEDSYLHFAVDLAEKEGLPVVATNDVCFIKADDFDAHEIRVAIHDGFTLEDPRRPKNY 234 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YL+ EM +F+D+PEALEN+VEIA+RC+ +++ LP F + + E Sbjct: 235 SSQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGM-----KIE 289 Query: 309 NELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + L K+ GLE RLA + +Y +RL EL+VI +M F GYFLIV +FIQ Sbjct: 290 DFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLIVMEFIQ 349 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 W+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC D Sbjct: 350 WSKDNLIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMD 409 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 +RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDRL KLIP DP Sbjct: 410 KRDKVIEHVAEIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKLIPTDPGM 469 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++ +A + + E AD V L+++ + LEG R+A HA G+VI ++ P+ Sbjct: 470 TLA-KAFEAEPQLPELYNADEEVRALIDMCRILEGCTRNAGKHAGGVVISPTTITDFSPL 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSL 600 Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V + Sbjct: 529 YCDADGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRREKEGKEAVRIES 588 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD ++ LL T +FQLES GM+ ++ +QPD EDIIALV+L+RPGP+ + +V Sbjct: 589 IPLDDQASFKLLQNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMV 648 Query: 661 YN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 N +RK+G+E++ H + L+ T G+I+YQEQVMQIAQ+L+GY+L AD+L Sbjct: 649 DNFIDRKHGREEVSYPDVNWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADML 708 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+AAYA++S Sbjct: 709 RRAMGKKKPEEMAKQRGTFKDGAIANGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVS 768 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-D 832 YQT W+KTHYP EF+AA MT +MDN +KI + + ++++PP VN F V D Sbjct: 769 YQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLKVLPPDVNAGLYRFNVDED 828 Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y + AIKGVG +I+EA + F L DFCSR+D+KK N+R++E L+ +GAL Sbjct: 829 GAIVYGIGAIKGVGEGPIENIIEARNKGGYFRDLFDFCSRIDTKKTNKRIVEKLIRSGAL 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS--- 948 D G R L+ S+++ K A + + ++F +T VE + Sbjct: 889 DRLGPHRAALMASVEDAMKAAGQHHQAESFGQSDMFG--------VLTQAPEEVEQAYTH 940 Query: 949 ------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V E E+ LG Y +GHP++ Y L + ++ T R + +A +V+ Sbjct: 941 VPRWPEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++GSRIG +T + + E F Sbjct: 1001 AARVMTTKRGSRIGLMTLDDRSGRMEVMLF 1030 >gi|84389777|ref|ZP_00991329.1| DNA polymerase III subunit alpha [Vibrio splendidus 12B01] gi|84376878|gb|EAP93752.1| DNA polymerase III subunit alpha [Vibrio splendidus 12B01] Length = 1159 Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1053 (40%), Positives = 619/1053 (58%), Gaps = 55/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A G++ Sbjct: 4 PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGCGVK 63 Query: 69 PIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PIIG + D D L + ++ + +GY L L+S+ YL Sbjct: 64 PIIGADFLMQSPDFGDELT-------------KLTVIATNNKGYNNLTLLISKAYLRGHV 110 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + I WL E EGLI+L+G G I +A + ++ + +K F DR Y+ Sbjct: 111 QHQPVIDKEWLIE-HAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYLE 169 Query: 186 LQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 L R D ES + ++LA +LP+VATN +F+SE+ ++AH++ +A+ + Sbjct: 170 LIRTGRPDE--ESYLHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVD 227 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ + YL++ EM +FSD+PEALEN+VEIA+RC+ +++ LP F + Sbjct: 228 PRRPKNYSSQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + +Y +RL EL V+ M F GYFL Sbjct: 287 ----AIEDFLIKKSEEGLERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL Sbjct: 403 DIDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 +P DP + +A+ + E D V L++ + LEG R+A HA G+VI Sbjct: 463 VPPDPGMTLEKAFLAEPA-LPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTT 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 522 ITDFAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGK 581 Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 V + IP DD +++LL T +FQLES GM+ ++ +QPD EDIIALV+L+RPG Sbjct: 582 EPVRIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E + H + L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 762 AAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLY 821 Query: 827 DFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E Sbjct: 822 RFNVDEDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEK 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLE 941 L+ +GALD G R ++ SL + K A + ++F G +D ++ + Sbjct: 882 LILSGALDRLGPHRAAMMASLKDAVKAASQHHHAESFGQSDMF----GVLTDAPEEVEHK 937 Query: 942 KFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 V V E E+ LG Y +GHP++ Y L K +++ T R ++ +A Sbjct: 938 YTQVPKWPEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAG 997 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++G+RIG +T + + E F Sbjct: 998 LVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|52424629|ref|YP_087766.1| DNA polymerase III subunit alpha [Mannheimia succiniciproducens MBEL55E] gi|52306681|gb|AAU37181.1| DnaE protein [Mannheimia succiniciproducens MBEL55E] Length = 1159 Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1051 (40%), Positives = 625/1051 (59%), Gaps = 51/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+++G + ++ + A+A+TD N ++F +A +GI+ Sbjct: 4 PRFVHLRVHSDFSMIDGIAKVKPLVKTCVQENMVAMALTDFTNFCGLVKFYGEALGSGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D+ ++ +L G F + LL GY+ + L+S+ Y +G + Sbjct: 64 PIMGA--DVSVKSDL----CGDEHF----ELTLLAKNNAGYKNITLLLSKAY--QRGYED 111 Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFGDRLYVNL 186 V I WL E EG+I+L+GG G + + ++ E + ++K F D Y++L Sbjct: 112 VPYIDQDWLAEY-NEGIIVLSGGRKGDVGKKLLKTGAADEVESAVGFYQKYFPDHYYLSL 170 Query: 187 QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 R H + Y ++ ++LA H LP+VATN+ +FL ED+EAH++ +A+ + Sbjct: 171 SRTGHNEEETYIKT-ALKLAEKHNLPVVATNDVVFLKSEDFEAHEIRVAIHDGFTLDDPK 229 Query: 245 RPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP++ D Y ++ EM +F+D+P ALENT+ IA+RC+ +++ LP+F E Sbjct: 230 RPKLYSDRQYFRSEQEMCELFADIPSALENTLLIAQRCNVTIRLGEYFLPQFPTGEL--- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L +A GLE RL + Y +RLD EL VI +M F GYFLIV Sbjct: 287 --STEDYLIKRAKDGLEERLKVLFPDEKEREEKRPAYDERLDTELGVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 345 MEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD+VI +V + YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 405 DFCMDNRDKVIEHVADMYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + ++ +D V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PDPGMTLA-KAFDAEPQLQQIYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPTLIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R + Sbjct: 524 DFSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMDRDGKPH 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP DD E+++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 584 IDINHIPLDDPESFNLLLKSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPL 643 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 ++ +V N +RK+G+E++ H + P+L+ T GVI+YQEQVMQIAQ L+GY+L Sbjct: 644 ESGMVQNFIDRKHGREEVAYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F GA + GI +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADLLRRAMGKKKPEEMAKQRSVFEKGAIEKGIDGELAMKIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+KTHYP EF+AA MT EMDN +KI + + + + PP +NT F Sbjct: 764 YALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLTVTPPDINTGKHHF 823 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D+ I Y + AIKGVG ++ A F L D C+RVD KK+NRR ESL+ Sbjct: 824 SVNDHGEIVYGIGAIKGVGEGPIEALVSAREKGGIFKDLFDLCARVDLKKINRRTFESLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L ++L++ K + K+ ++F G ++ + + Sbjct: 884 MSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAAGQADMF----GVLTESPEEVEIAYA 939 Query: 947 NSSVRFE-----NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 N+ E E+ LG Y S HP+ Y L ++ V IRG + +V Sbjct: 940 NTPRWSEKQILDGERETLGLYLSSHPISRYLKELSHYSPNRLKDLVPNIRGQVSTASGLV 999 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V+ + T+KG+R+G T + + + F Sbjct: 1000 VASRFAVTKKGNRLGIATLDDRSGRLDITLF 1030 >gi|120602759|ref|YP_967159.1| subunit alpha [Desulfovibrio vulgaris DP4] gi|120562988|gb|ABM28732.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris DP4] Length = 1175 Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1052 (40%), Positives = 628/1052 (59%), Gaps = 37/1052 (3%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 L++ E FVHL H+ YSLL+GA+ L ++ + A AITD NLF A F Sbjct: 5 LSRTEENMSDFVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYT 64 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 + GI+PIIGC++ + D T++ +T + +VLL EGY L+ LV+R Sbjct: 65 TCKSFGIKPIIGCEVYVAATDRTDKTSEFARTRY----HLVLLAQNNEGYHNLVRLVTRG 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + R+ L+E ++GLI L+ +G + R + +F Sbjct: 121 FT-EGFHYKPRVDKELLREY-SDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFP 178 Query: 180 DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 R Y+ LQ + ++ ++++LA LPLVATN+ +L D EAHD+L+ + T Sbjct: 179 GRFYLELQSNGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQT 238 Query: 239 VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V R R T + Y K+ EM F+ +PEA+ NT IA C+ + P + Sbjct: 239 TVDDPKRMRFETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYEL 298 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E + + E + A GL+ RL + + Y RL++EL VI M F GYF Sbjct: 299 PEGMTL----DTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYF 354 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK N IPVGPGRGS AGS+ A++L IT++DP+ + LLFERFLN +R+SMPD Sbjct: 355 LIVQDFINWAKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPD 414 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D+DFC+ RR EVIRYV KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ K Sbjct: 415 IDVDFCERRRTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAK 474 Query: 478 LIPNDPAHPV--SLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 LIP D + +L+A D + +R+ DP + +LL++S +LEGL RHASTHAAG+VI Sbjct: 475 LIPEDLKMTIKKALEAEPDLATLYRD----DPQIRKLLDVSMRLEGLSRHASTHAAGVVI 530 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593 D+P+S+ +P+Y+ + + VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD + ++G Sbjct: 531 SDKPMSEYLPLYKGKKGET-VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGK 589 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 DL + DD ETY L + T G+FQ+ESSGMRQ L ++P C +DIIA+++LYRPG Sbjct: 590 TPPDLDTLSLDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPG 649 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+ + +V + RK+G+ + P ++ L+ T GVI+YQEQVMQIAQ++ Y+L AD Sbjct: 650 PLGSGMVDEFIKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGAD 709 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKKI E M +++ +F+ GA KN I K A IF+L+ KFA+YGFNKSH+AAYA+ Sbjct: 710 LLRRAMGKKIAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYAL 769 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISY TA++K H+PVEF+AA +T EM N +K+ K+ + +I+++ P+V +F V Sbjct: 770 ISYYTAFLKVHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVH 829 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + RI + L IK VG R I++A + P+ SL D C RV+ +K+ +RV+E+L+ GA Sbjct: 830 EGRIVFGLGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGA 889 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---------GTFSDKITLE 941 DC G +R +L SLD + AQ K R + ++F K G ++ T Sbjct: 890 CDCLGCTRAGMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAP 949 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 ++ ++ +RFE E LGF+ + HPL Y+ L ++ + EE+ G IR A +V Sbjct: 950 EWP-DDQKLRFEKE--ALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLV 1006 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ T+KG R+ + + E FFP Sbjct: 1007 TTLKELMTKKGQRMAFAGVEDLTASAEVVFFP 1038 >gi|302134069|ref|ZP_07260059.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 1173 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1067 (39%), Positives = 622/1067 (58%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + +F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLAVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+++ D+EAH+ + + + R Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALEN+VEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVGRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E+++KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVDEAPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 886 SGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGGLFV 945 Query: 930 --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++ + S+++ R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 EADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGHPIDEYEGEIRRFA----RQRI 998 Query: 988 ATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 999 IDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|157372010|ref|YP_001479999.1| DNA polymerase III subunit alpha [Serratia proteamaculans 568] gi|157323774|gb|ABV42871.1| DNA polymerase III, alpha subunit [Serratia proteamaculans 568] Length = 1162 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1051 (41%), Positives = 617/1051 (58%), Gaps = 48/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + ++ + AA PA+AITD NL ++F A AGI+ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L + EGYQ L L+SR Y G Sbjct: 64 PIIGADFHV----------QSEVLGDELAQLTVLAANNEGYQNLTLLISRAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+G G + + + E+ L +++ F D Y+ L R Sbjct: 114 PIIDRDWLIE-HREGLILLSGARQGDVGKFLLRGNQPQVEQCLEFYQQYFPDSYYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA LP+VATN+ FL +D++AH++ +A+ + RPR Sbjct: 173 TGRPDEENYLHAAVALATERGLPVVATNDVRFLVADDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ LP+F D+ E Sbjct: 233 NYTSQQYMRDEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQF---PTGDMTTE 289 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 + L++K GLE RL AQ +Y +RLD EL VI +M F GYFLIV +F Sbjct: 290 DFLVLKSKE--GLEDRLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDLVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K +D+ Sbjct: 527 PLYCDAEGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKTGLEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL AD Sbjct: 647 MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM KQ+ F GA GI ++V IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKNPVEMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESLVF 887 D I Y + AIKGVG I+EA F L D C+R D KKLNRR+LE L+ Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIM 886 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D G R L+ SL + K A K ++F G ++ + S N Sbjct: 887 SGAFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMF----GVLAEAPEQVEQSYAN 942 Query: 948 -----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 V + E+ LG Y +GHP+ Y K I R G + ++ T RG +V Sbjct: 943 VPLWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLV 1002 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + T++G+RIG T + + E F Sbjct: 1003 IASRVMVTKRGNRIGICTLDDRSGRLEVMLF 1033 >gi|284008505|emb|CBA75016.1| DNA polymerase III subunit alpha [Arsenophonus nasoniae] Length = 1160 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1051 (41%), Positives = 629/1051 (59%), Gaps = 50/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G +N +++++A PA+AITD NL+ ++F A A GI+ Sbjct: 4 PRFIHLRVHSDYSIIDGLAKINPLVNRVAELGMPALAITDFTNLYGLIKFYGAAHAEGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D ++ L V + +L +GY L L+S Y G Sbjct: 64 PIIGA--DFYLESELLGDE--------VAHLTILARDNKGYHNLTLLISAAYQKGYGAIG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL EGL++L+GG G + + + Q+ E+ L ++ F + Y+ L R Sbjct: 114 PTIKREWLV-THKEGLLLLSGGCLGDVGKFLLRGNQQLVEQCLDFYQTHFPNNYYLELVR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + VQLA +P+VATNN F++ +D+ AH++ +A+ ++ + RP+ Sbjct: 173 TGRPDEESYLHAAVQLAAEKGVPVVATNNVRFINSDDFAAHEIRVAIHDGFTLADQKRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL++ EMV +F+D+PEALEN+VEIA+RC+ ++++ LP+F + Sbjct: 233 NYSPQQYLRSEQEMVELFADIPEALENSVEIAKRCNVMMRLGEYFLPQFPTGDM-----A 287 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L A AGLE RL + A+ +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLIKCAKAGLEERLQFLYPNEKERAERRIEYDERLDTELRVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P+DP Sbjct: 408 MEKRDQVIEHVAQMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLVPSDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + + +E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFVVEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D P+TQF+ +E AGL+KFDFLGL+TLT++ +LD + QR K +D+ Sbjct: 527 PLYCDPEGQNPLTQFDKNDVEYAGLVKFDFLGLRTLTIISWALDMINQRRAKQNLAPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP D + + LL T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 ATIPLTDQKCFDLLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDVEWQHASLQTVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM +Q+ F +GA KNGI + + IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAQQRSIFEAGAVKNGIDGELGMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N+ F V Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVSLVDECWRMGLKVLPPDINSGLYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I+E+ F + D C+RVD+KKLNRRV+E L+ +G Sbjct: 827 DRGEIVYGIGAIKGVGEGPIEAIIESRQKGGYFKEIFDLCARVDTKKLNRRVMEKLIMSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D G R L+ SL++ K A K ++F G ++ E+ +S Sbjct: 887 AFDHLGPHRAALMSSLEDALKAADQHAKAEAIGQTDMF----GVLAE--APEQVEQSYAS 940 Query: 950 VR-------FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 V E E+ LG Y +GHP+ Y I R ++ T RG + + Sbjct: 941 VAKWPEHLILEGERETLGLYLTGHPITAYLSEIERYTSGLRLKDVNPTPRGQMSTVVGLA 1000 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + T++G+RIG T + + + F Sbjct: 1001 LTAKVVTTKRGNRIGICTLDDRSGRLDIMLF 1031 >gi|149377463|ref|ZP_01895205.1| DNA polymerase III subunit alpha [Marinobacter algicola DG893] gi|149358230|gb|EDM46710.1| DNA polymerase III subunit alpha [Marinobacter algicola DG893] Length = 1160 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1054 (40%), Positives = 626/1054 (59%), Gaps = 53/1054 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S +FVHL+VHS YS+++G + + ++ ++A PA+ +T+ +N+ S + F + A AG+ Sbjct: 2 SQTFVHLRVHSEYSMVDGLVRVKPLIGRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG L ++ D + PF I LL +GY L E+VS Y Q Sbjct: 62 KPIIGADLWVENPD------EPDNPF----RITLLARNNDGYLNLTEVVSLGYTEGQRFG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL E TEGLI L+G G + +A +A +R + L+ Y+ LQ Sbjct: 112 KPIIQRQWL-ENRTEGLIALSGARLGDVGKALMSGKLDLARQRAEYWMSLYPGSFYLELQ 170 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R D V+LA P+VATN+ FL ED+EAH+ + + S + R Sbjct: 171 RTGRPGDEDCLHLNVELAEALGCPVVATNDVHFLHAEDFEAHEARVCIGESRTLDDPRRD 230 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D YL++ EM+ +FSD+PEA+ENTVEIARRCS +++ LP + D + Sbjct: 231 RRFSDQQYLRSADEMIELFSDIPEAVENTVEIARRCSVPVRMGEYFLPNY--PIPDGMTM 288 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIV 360 +E R + GLE RLA+ ++K D Y +RL+FEL++I +M F GYFLIV Sbjct: 289 DEY--FRKVSEEGLEERLAK-TLSKDDPEYDSKREAYYKRLNFELDIIIQMGFPGYFLIV 345 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI+WAK N +PVGPGRGSGAGS+ AYA ITD+DPL + LLFERFLNP+R+SMPDFD+ Sbjct: 346 MDFIKWAKNNGVPVGPGRGSGAGSLVAYAQLITDLDPLEYDLLFERFLNPERVSMPDFDV 405 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RD VI YV KYG E V+QIITFG++ AKA +RDV R Y D+L K+IP Sbjct: 406 DFCMEGRDRVIAYVAEKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIP 465 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +P + +A+ + + E D + E++ KLEG+ R+A HA G+VI ++ Sbjct: 466 FEPGMTLE-KALEQEPQLVEFLENDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKIT 524 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D VTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 525 DFSPLYCDDEGGSLVTQFDKGDVEDAGLVKFDFLGLRTLTIIDWALKMINPRLEKQGKPA 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP DD ++ +L T +FQLES GM+ + +QPD +ED+IALV+L+RPGP+ Sbjct: 585 LDINEIPLDDVPSFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPL 644 Query: 656 DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + +RK+G++ + HP + P+L+ T GVI+YQEQVMQIAQ+++GYSL Sbjct: 645 QSGMVDDFIDRKHGRQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMAGYSLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQK+ F+ G N I+KT+A NIF+L+ KFA YGFNKSH+AA Sbjct: 705 NADMLRRAMGKKKPEEMAKQKQFFLDGCENNDINKTLAENIFDLVEKFAGYGFNKSHSAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA +T +M N +K+ ++ R ++++ P V+ F Sbjct: 765 YALVSYQTLWLKAHYPAEFMAAVLTADMQNTDKVVTLVEECRSMGLELLVPDVSRSEYTF 824 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886 V D+ I Y L AIKG+G I AD +P+ + DFC RVD KK+N+R +E+L+ Sbjct: 825 TVNDDGAIVYGLGAIKGLGEGPIGSIQAGRADGEPYQDIFDFCRRVDLKKVNKRAMEALI 884 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL 940 +GA+D G R QL+ S+D + A +N T ++F + +SD + Sbjct: 885 RSGAMDKLGAGRAQLMASIDKAIQQAGQQSRNETVGMTDMFGDMLMGGEDGDPYSDVANV 944 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLA 998 ++ + R + E+ LG Y +GHP D Y+ +R+ S+A ++ R+A Sbjct: 945 REWPKKE---RLKGEKDTLGLYLTGHPFDEYEKEVRRF----VRSSIADLKPARQPQRVA 997 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+++ KTR GS + ++T + + EA F Sbjct: 998 GLVVAQRSMKTRTGSTMAFITLDDRSARIEATLF 1031 >gi|46579764|ref|YP_010572.1| DNA polymerase III subunit alpha [Desulfovibrio vulgaris str. Hildenborough] gi|46449179|gb|AAS95831.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris str. Hildenborough] gi|311233555|gb|ADP86409.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris RCH1] Length = 1164 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1042 (40%), Positives = 624/1042 (59%), Gaps = 37/1042 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+GA+ L ++ + A AITD NLF A F + GI+PI Sbjct: 4 FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IGC++ + D T++ +T + +VLL EGY L+ LV+R + + Sbjct: 64 IGCEVYVAATDRTDKTSEFARTRY----HLVLLAQNNEGYHNLVRLVTRGFT-EGFHYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L+E ++GLI L+ +G + R + +F R Y+ LQ + Sbjct: 119 RVDKELLREY-SDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSN 177 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ ++++LA LPLVATN+ +L D EAHD+L+ + T V R R Sbjct: 178 GIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRF 237 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y K+ EM F+ +PEA+ NT IA C+ + P + E + Sbjct: 238 ETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTL---- 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + E + A GL+ RL + + Y RL++EL VI M F GYFLIV DFI WA Sbjct: 294 DTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINWA 353 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N IPVGPGRGS AGS+ A++L IT++DP+ + LLFERFLN +R+SMPD D+DFC+ RR Sbjct: 354 KNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRR 413 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVIRYV KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KLIP D + Sbjct: 414 TEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMTI 473 Query: 488 --SLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +L+A D + +R+ DP + +LL++S +LEGL RHASTHAAG+VI D+P+S+ +P Sbjct: 474 KKALEAEPDLATLYRD----DPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLP 529 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603 +Y+ + + VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD + ++G DL + Sbjct: 530 LYKGKKGET-VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLSL 588 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 DD ETY L + T G+FQ+ESSGMRQ L ++P C +DIIA+++LYRPGP+ + +V + Sbjct: 589 DDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEF 648 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+G+ + P ++ L+ T GVI+YQEQVMQIAQ++ Y+L AD+LRRAMGKKI Sbjct: 649 IKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKI 708 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E M +++ +F+ GA KN I K A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K Sbjct: 709 AEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKV 768 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 H+PVEF+AA +T EM N +K+ K+ + +I+++ P+V +F V + RI + L Sbjct: 769 HFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIVFGLGG 828 Query: 842 IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK VG R I++A + P+ SL D C RV+ +K+ +RV+E+L+ GA DC G +R Sbjct: 829 IKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRAG 888 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---------GTFSDKITLEKFSVENSSVR 951 +L SLD + AQ K R + ++F K G ++ T ++ ++ +R Sbjct: 889 MLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWP-DDQKLR 947 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 FE E LGF+ + HPL Y+ L ++ + EE+ G IR A +V + ++ T+K Sbjct: 948 FEKE--ALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKELMTKK 1005 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G R+ + + E FFP Sbjct: 1006 GQRMAFAGVEDLTASAEVVFFP 1027 >gi|261496138|ref|ZP_05992546.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308240|gb|EEY09535.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica serotype A2 str. OVINE] Length = 1158 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1047 (40%), Positives = 616/1047 (58%), Gaps = 48/1047 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S++ G + +++ A+ A+ +TD N ++F +A AGI+PI Sbjct: 6 FVHLKVHSDFSMINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGAGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK-QSV 129 IG + + T G + + LL +GY + +++S+ Y QG + Sbjct: 66 IGADVYV-------RTEAGSEDYF---ELTLLAKNNKGYHNITQILSKAY--QQGYIEFP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + WL E+ EG+I+L+GG G + +A + Q AE+++ +++ + + Y+++ R Sbjct: 114 MVEREWLAEL-NEGIIILSGGRMGDVGKALLKENRQEAEEKVAFYQQYYPNHFYLSVCRT 172 Query: 190 RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 D R Q V+ + + +PLVA N+ +FL E+D++AH++ +A+ S + RP+ Sbjct: 173 GRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKK 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +P Y + EM +F+DLP AL NTVEIA+RCS +++ LP F E Sbjct: 233 YSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPNFPTGELST----- 287 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV +FI Sbjct: 288 EDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFI 347 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 407 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D RD VI +V YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP DP Sbjct: 408 DGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG 467 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ P Sbjct: 468 MTLE-KAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSP 526 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLS 599 +Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + +R + + + Sbjct: 527 LYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIE 586 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+++ + Sbjct: 587 TISLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGM 646 Query: 660 VYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 V N +RK+GKE++ H + P+L+ T GVI+YQEQVMQIAQ L+GY+L AD+ Sbjct: 647 VQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADL 706 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM Q+E F GA GI +A IF+L+ KFA YGFNKSH+AAYA++ Sbjct: 707 LRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALV 766 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ F V + Sbjct: 767 SYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNE 826 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I Y L AIKGVG I+ A + F L D +RVD KK+NRR ESL+ +GA Sbjct: 827 KGEIVYGLGAIKGVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGA 886 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-- 948 D G R L+++L++ K + K ++F G ++ + + N+ Sbjct: 887 FDKLGPHRAALMKNLEDALKASDQHAKMEELGQSDMF----GVLTETPEEVQNAYANTPK 942 Query: 949 ---SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y SGHP+ + L E T RG ++ +V++ + Sbjct: 943 WSEQVILDGERATLGLYLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GSRIG T + + + + F Sbjct: 1003 VAVTKRGSRIGIATIEDRSGKLDITLF 1029 >gi|257464972|ref|ZP_05629343.1| DNA polymerase III subunit alpha [Actinobacillus minor 202] gi|257450632|gb|EEV24675.1| DNA polymerase III subunit alpha [Actinobacillus minor 202] Length = 1157 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1050 (40%), Positives = 623/1050 (59%), Gaps = 48/1050 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP FVHL+VHS +S++ G + +++ AAD A+A+TD N ++F ++ A+GI Sbjct: 2 SPRFVHLKVHSDFSMINGLAKVKSLVKAAAADNMVAMALTDFTNFCGLVKFYGESLASGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG + + + ++ V + LL +GY + L+S Y QG Sbjct: 62 KPIIGADILV----------RSESESEEVYELTLLAKNNQGYHNITLLLSMAY--QQGYV 109 Query: 128 SVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + + +WL E EG+I+L+GG SG + +A + + AE +++ F + Y ++ Sbjct: 110 DLPLVEKAWLAEY-NEGIIVLSGGRSGDVGKALLKENVKEAENLTAFYQQYFPNHFYFSV 168 Query: 187 QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D R S +V A +P+VA N+ +FL E+D++AH++ +A+ S + R Sbjct: 169 CRTGRADEERYISAIVPFANQKGIPIVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKR 228 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P Y ++ EM +F+DLP ALENT+EIA+RCS +++ LP F D+ Sbjct: 229 PKKYSPQQYFRSEEEMCRLFADLPSALENTIEIAKRCSVTVRLGEYFLPNF---PTGDLT 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 EE L K+ GLE RLA + + Y +RL EL+VI +M F GYFLIV Sbjct: 286 TEEF--LIKKSEEGLEERLAFLFPDPEERASKREVYDKRLQVELDVINQMGFPGYFLIVM 343 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 344 EFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 403 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D RD VI +V YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP Sbjct: 404 FCMDGRDRVIDHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPP 463 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A A + + E +D V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 464 DPGMTLE-KAFAAEPKLPELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 522 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKV 596 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + A+ V Sbjct: 523 FSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARLTAEGKEPV 582 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP +D +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP++ Sbjct: 583 RIESIPLNDKKSFDLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLE 642 Query: 657 NIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+GKE++ H + P+L+ T GVI+YQEQVMQIAQ L+GY+L Sbjct: 643 SGMVQNFIDRKHGKEEVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGG 702 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM Q+E F GA + I +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 703 ADLLRRAMGKKKPEEMAAQREIFEKGAIEKNIDGELAMKIFDLVEKFAGYGFNKSHSAAY 762 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA M+ EMDN +KI + + ++PP +N+ F Sbjct: 763 ALVSYQTLWLKAHYPAEFMAAVMSSEMDNTDKIVGLYDECINMGLTVVPPDINSGKHHFS 822 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR ++L+ Sbjct: 823 VNEKGEIVYGLGAIKGVGEGPIDAILEARQKDGIFKDLFDLTARVDLKKINRRTFDALIM 882 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +G+LD G R L+++L++ K + K ++F G ++ + + N Sbjct: 883 SGSLDKLGPHRAALMKNLEDALKASDQHTKMEALGQSDMF----GVLTETPEEVQNAYAN 938 Query: 948 S-----SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + V + E+ LG Y SGHP+ + L E T RG + +A +V+ Sbjct: 939 TPKWSEQVVLDGERATLGLYLSGHPIGRFLKELAHYAPVRLNELQPTYRGQMVTVAGIVM 998 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 S + T++GSRIG T + + + + F Sbjct: 999 SYRVAVTKRGSRIGIATIEDRSGKLDITLF 1028 >gi|163750366|ref|ZP_02157606.1| DNA polymerase III subunit alpha [Shewanella benthica KT99] gi|161329856|gb|EDQ00842.1| DNA polymerase III subunit alpha [Shewanella benthica KT99] Length = 1157 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/1053 (41%), Positives = 613/1053 (58%), Gaps = 56/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSFVHL+VHS +S+ +G + IL K+ PA+A+TD NL ++F +AG++ Sbjct: 4 PSFVHLRVHSDFSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHSAGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVLLVSTAEGYQRLIELVSRMYL 121 PIIG D MQ VP +I +L T EGY L L+S YL Sbjct: 64 PIIGA--DFWMQ---------------VPGFDKEFCAITVLAMTNEGYSNLTLLISDAYL 106 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKL-FG 179 K I WL + ++GL++L+GG G + RA N QVA L+ F + F Sbjct: 107 RGHIKDKAVIDQGWLAKY-SKGLLLLSGGRQGDVGRALLNGNHGQVAS--LIEFYRTHFP 163 Query: 180 DRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 DR Y+ L R R + V LA +LP+VATN +F E +EAH++ +A++ Sbjct: 164 DRYYLELLRTGRPDEETYLHLAVALAQEKDLPVVATNQVVFNGPEFFEAHEIRVAISDGF 223 Query: 239 VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 ++ RP+ + Y K EM +F D+PEA+ NTVEIA+RC+ +++ LP F Sbjct: 224 TLADPRRPKKYSEQQYFKTSEEMCELFQDIPEAIANTVEIAKRCNVTVRLGEYFLPNFPT 283 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFS 354 + E+ L + GLE RL AQ Y +RLD EL VI +M F Sbjct: 284 GDL-----SIEDFLVKVSKDGLEDRLEFLFPDPEVRAQKRPRYDERLDIELKVINQMGFP 338 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIV +FIQW K NIP+GPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+S Sbjct: 339 GYFLIVMEFIQWGKDQNIPIGPGRGSGAGSLVAYSLNITDLDPLEYDLLFERFLNPERVS 398 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR Sbjct: 399 MPDFDIDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDR 458 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 + K++P +P ++ +A + +E+ D V L+++ + LEG+ R+A HA G+VI Sbjct: 459 ISKMVPAEPGMTLA-KAFEVEPALQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVI 517 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 518 SPTKITDFAPIYCDSEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRK 577 Query: 595 K-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 + V + IP DD + + LL T +FQLES GM+ ++ +QPD ED+IALV+L Sbjct: 578 ELGKEPVRIESIPLDDKKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVAL 637 Query: 650 YRPGPIDNIVVYN--NRKNGKEKIVSI------HPLIDPMLKETQGVIIYQEQVMQIAQL 701 +RPGP+ + +V N RK+G+E +VS H + +L+ T G+I+YQEQVMQIAQ+ Sbjct: 638 FRPGPLQSGMVDNFIERKHGRE-VVSFPDAEYQHESLRWVLEPTYGIILYQEQVMQIAQV 696 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 L+GYSL AD+LRRAMGKK EEM KQ+ F GA NGI +++ IF+L+ KFA YGF Sbjct: 697 LAGYSLGGADMLRRAMGKKKPEEMAKQRGTFKEGAINNGIDGELSMKIFDLVEKFAGYGF 756 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSH+AAYA++SYQT W+KTHYP EF+AA M+ +MDN +KI + + ++PP V Sbjct: 757 NKSHSAAYALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDV 816 Query: 822 NTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 N + F V + +I Y + AIKGVG I+ A + PF L DFC+RVD KKLN+R Sbjct: 817 NKGLLKFTVDEEGKIVYGIGAIKGVGDGPVESILAARKNGPFKDLFDFCARVDLKKLNKR 876 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939 ++E L+FAGALD G R ++ +L + A K ++F D K Sbjct: 877 IMEKLIFAGALDSLGPHRAAMMATLPEAVRAADQNAKAEAIGQHDMFGLLNSDVEDIKQQ 936 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 + + V E E+ LG Y +GHP++ Y L+ ++ T RG ++ A Sbjct: 937 FVQCTPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAG 996 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T++GS++G VT + + E F Sbjct: 997 LVIATRVMLTKRGSKMGLVTLDDKSARLEVMLF 1029 >gi|293390623|ref|ZP_06634957.1| DNA polymerase III subunit alpha [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951157|gb|EFE01276.1| DNA polymerase III subunit alpha [Aggregatibacter actinomycetemcomitans D7S-1] Length = 1158 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1053 (40%), Positives = 622/1053 (59%), Gaps = 56/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHLQVHS +S+++G + ++ + A+ +TD N + F +A ++G++ Sbjct: 4 PRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D+ +Q L G F + LL EGY+ + L+S+ Y ++G Sbjct: 64 PIIGT--DVLVQSAL----CGDEKF----RLTLLAKNNEGYKNITLLLSKAY--ERGYAD 111 Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + I WL E G+I+L+GG +G + + ++ + + +++ F D Y+ L Sbjct: 112 LPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTLT 170 Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R D R +V ++LA +LP+VATN+ FL ED+EAH++ +A+ + RP Sbjct: 171 RTGRPDEERYIKVALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRP 230 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 ++ T Y ++ EM +F+D+P ALENTV IA+RC+ +++ LP+F + Sbjct: 231 KLYTSQQYFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPTGDL----- 285 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L +A GLE RL + +Y +RL EL+VI +M F GYFLIV + Sbjct: 286 STEDYLVKRAKDGLEERLKVMFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVME 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 346 FIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI +V YGH V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P D Sbjct: 406 CMDGRDRVIDHVAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPD 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A + + +E AD V ++++++KLEG+ R+A HA G+VI ++ Sbjct: 466 PGMTLA-KAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R K VD Sbjct: 525 SPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVD 584 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD +++ +L T +FQLES GM+ ++ ++PDC EDIIALV+L+RPGP+ + Sbjct: 585 INAIPLDDQQSFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQS 644 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L A Sbjct: 645 GMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 705 DLLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYA 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+AA MT EMDN +KI + + ++++PP +NT F V Sbjct: 765 LVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFSV 824 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +N I Y + AIKGVG ++EA D F +L D C+RVD KK+NRR ESL+ + Sbjct: 825 NENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKS 884 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D G R L Q+L++ + + K+ ++F +T VENS Sbjct: 885 GAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFG--------VLTETNEEVENS 936 Query: 949 SVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 + E+ LG Y S HP+ Y L +E V RG + Sbjct: 937 YANIAPWTEKTILDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASG 996 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V+S + T+KG+ IG T + + + F Sbjct: 997 LVMSTRVAVTKKGNHIGIATIDDRSGRLDLTLF 1029 >gi|219871559|ref|YP_002475934.1| DNA polymerase III subunit alpha [Haemophilus parasuis SH0165] gi|219691763|gb|ACL32986.1| DNA polymerase III subunit alpha [Haemophilus parasuis SH0165] Length = 1158 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1056 (40%), Positives = 614/1056 (58%), Gaps = 62/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S++ G + ++ A+ A+A+TD N + F +A +G++ Sbjct: 4 PRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPT---VPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PI+G + + P P + + LL GY + L+S+ Y QG Sbjct: 64 PIVGADVMV-------------RPEPESEELYELTLLAKNNTGYHNITLLLSKAY--QQG 108 Query: 126 KQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + +WL E EG+I+L+GGS+G + +A + Q AE+ L +++ F + Y+ Sbjct: 109 YVEFPVVEKAWLAE-HNEGVILLSGGSNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYL 167 Query: 185 NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +L R D R Q V + +PLVA N+ +FL + D+EAH++ +A+ S + Sbjct: 168 SLCRTGRSDEERYIQQAVTFSQKFAIPLVAVNDVMFLKQNDFEAHEIRVAIHDSFTLDDP 227 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP + + Y ++ EM +F+DLP+A+ENT+ IA+RC+ +++ LP F + Sbjct: 228 KRPQKYSEQQYFRSEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGEYFLPNFPTGDLS- 286 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + Y +RL EL+VI +M F GYFLI Sbjct: 287 ----TEDFLVKKAKEGLEERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLI Sbjct: 403 VDFCMDGRDRVIEHVSETYGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP ++ +A + + E D V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTLA-KAFEAEPKLPELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR K Sbjct: 522 TDFSPLYCDSYGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKP 581 Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +T+ LL T +FQLES GM+ + +QP EDIIALV+L+RPGP Sbjct: 582 PVRIESIPLDDEKTFKLLKAAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGP 641 Query: 655 IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V N +RK+GKE I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 642 LESGMVQNFIDRKHGKEPIAYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+ F GA K GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT EMDN +KI F + + ++PP +N+ Sbjct: 762 AYALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDINSGKHR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKGVG ++EA + D F L D +RVD +K+NRR E L Sbjct: 822 FSVNEKGEIVYGLGAIKGVGEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGA D G R L+++L++ + +++H + A + +T V Sbjct: 882 IMAGAFDKLGPHRAALMKNLEDALR--------ASDQHNKMEALGQSDMFGVLTETPEEV 933 Query: 946 ENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 +N+ +NE+ LG Y SGHP+ + L E T RG Sbjct: 934 QNAYANTPKWTEQTILDNEKATLGLYLSGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTT 993 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +++ + T+KGSRIG T + + + + F Sbjct: 994 VAGLIMGARIATTKKGSRIGIATIEDRSGKMDLTLF 1029 >gi|90580986|ref|ZP_01236787.1| DNA polymerase III subunit alpha [Vibrio angustum S14] gi|90437864|gb|EAS63054.1| DNA polymerase III subunit alpha [Vibrio angustum S14] Length = 1159 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1056 (39%), Positives = 626/1056 (59%), Gaps = 61/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + I+ K + PA+A+TD NL ++F A AGI+ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKVKPIVKKASELSMPALAMTDFTNLCGLVKFYFAAHDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + G F + +L + EGY+ L L+S Y + Sbjct: 64 PIIGADFKV------QSAEMGDELF----ELTILAANNEGYKNLTLLISEAYQRGHVQHL 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL EGLI+L+GG +G + +A + ++ + + ++ F D Y+ L R Sbjct: 114 PVIDKEWLVN-HREGLIILSGGKNGDVGKALLKGNQKMVDGLVAFYQTHFPDSYYLELVR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA +LP+VATN+ L+ + ++AH++ +A+ + +RP+ Sbjct: 173 TGRADEEAYLHFAVELAEKADLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDPNRPK 232 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + YL++ EM +F+D+PEAL+N+VEIA+RC+ +++ LP F + Sbjct: 233 LYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 IEDFLIAKSKEGLEERLEFLFPDPEVRAARRPEYDERLDIELKVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC Sbjct: 348 IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P +P Sbjct: 408 MDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + +A AD V L+++ + LEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFDAEPQLGQAYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R ++ V++ Sbjct: 527 PLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRLIEQGKEPVNI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L + +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPMDDPKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +V N +RK+G+E + S+ ++DP T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 647 MVDNFIDRKHGREAVSYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F G+ KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +KI + + ++++PP VN Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMKLKLLPPDVNKGLYR 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D + Y + A+KGVG +I+ A F L DFC+R+D+KK+N+RVLE L Sbjct: 823 FNVDEDGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + +GA+D G +R +L +LD+ K A ++H A + +T V Sbjct: 883 IKSGAMDRLGPNRAAMLATLDDAIKAA--------SQHHQAEAFGQADMFGVLTAAPEEV 934 Query: 946 EN---------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 EN V E E+ LG Y +GHP++ Y L+ +++ T R Sbjct: 935 ENKYANIPEAPDKVWLEGERETLGLYLTGHPINAYLSELKHYTTWRLKDAQQTGRDKVAT 994 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +V++ + T++G+RIG +T + + E F Sbjct: 995 VAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|217967773|ref|YP_002353279.1| DNA polymerase III, alpha subunit [Dictyoglomus turgidum DSM 6724] gi|217336872|gb|ACK42665.1| DNA polymerase III, alpha subunit [Dictyoglomus turgidum DSM 6724] Length = 1127 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1028 (39%), Positives = 642/1028 (62%), Gaps = 31/1028 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA ++ ++D+ A PA+AITD ++ ++F +KA GI+P Sbjct: 2 SFVHLHVHTEYSLLDGACRIDELIDQAVAFNMPAVAITDHGVMYGVVDFYKKAIEKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + K + ++LL EGY+ LI+LVS + L+ Sbjct: 62 IIGCEVYVAPASRFD-----KKQRTDLFHLILLAKDFEGYKNLIKLVS-LSFLEGFYYKP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L++ ++GL+ L+ +G I N+ + A+ + + +FG+ Y+ LQ + Sbjct: 116 RVDKDLLRQY-SKGLVALSSCLAGEIPTYILQNNIERAKNAIKEYLDIFGEDFYLELQNN 174 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ Y + +++LA +PLVATN+ +L +ED E HD+L+ + + ++ KDR R Sbjct: 175 GMEEQEYVNNYLIRLAKEFNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRF 234 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y K+ EM+++F D+PEA+ENT +IA RC+ + ++ ILP F E + + Sbjct: 235 KTNEFYFKSPDEMINLFKDVPEAIENTFKIAERCNVEIPLNNIILPVFEVPEGETL---- 290 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ G + R + Q+ ++RL +E++VI +M FSGYFLIV DF+ +A Sbjct: 291 DSYFEKLCWEGAKKRFGENI------PQEIKERLSYEISVIKQMGFSGYFLIVQDFVNYA 344 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K IPVGPGRGS AGS+ +Y L IT+I+P R+ L+FERFLNP+R++MPD DIDFC +RR Sbjct: 345 KSKGIPVGPGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERR 404 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV+NKYG E VAQIITFG++ A+A++RDVGR L +PY++VDR+ KLIP P + Sbjct: 405 EEVIEYVRNKYGREHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLIP--PNTSI 462 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A++ R ++P R++EI++++EG RHAS HAAGIVI PL + VP+ Sbjct: 463 E-EALSTSEELRNLVESNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQV 521 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606 +D+ VTQF M +E+ GL+K DFLGL+TLT++ ++ + + G+++D+S I D Sbjct: 522 MNGNDV-VTQFPMTNLEELGLLKMDFLGLRTLTVIYDTVKKIKENYGIEIDISNISLTDE 580 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y LL T+G+FQLES GMR L ++P+ ED+IA+++LYRPGP+ + Y RK Sbjct: 581 KVYELLQKGDTIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPLGRLESYIKRKR 640 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EK+ +HP ++P+L ET GVIIYQEQVM+IA L+G++L +ADVLRRAMGKK E M+ Sbjct: 641 GEEKVEYMHPALEPILSETYGVIIYQEQVMEIAHKLAGFTLGQADVLRRAMGKKKPEVME 700 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +Q+ F+ GA + GI + +AV IFE +AKFA+YGFNKSH+AAYA +S+QTA++K +YP E Sbjct: 701 EQRGIFVKGAVERGIPEEVAVEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKVYYPKE 760 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 ++A+ +T +N K+ K+ +A++ I+I+PP +N VDF V I + L+AIK VG Sbjct: 761 YMASLLTSVKNNTTKLSKYIAEAKRIGIKILPPDINESMVDFTVTPQGIRFGLSAIKNVG 820 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 A I+E F S+ DF R+ SK +N+R LESL+ +GA D FGYSR LL ++D Sbjct: 821 ENVAEAIVEEREKGKFKSIFDFIKRLSSKVINKRTLESLIKSGAFDSFGYSRRALLANID 880 Query: 907 NIQKYAQWVEKNRTNKHE--NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 I + AQ ++K + ++ A + F + + +FS++ + E+ +LGFY S Sbjct: 881 KILESAQVIKKAHVGQVSLIDLEALPQDEFIN--NMPEFSIDEI---LDMEKEMLGFYVS 935 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 P + + + K+ ++ + G+ + + ++ + ++ RK ++ + T + Sbjct: 936 YDPQEELRKLSEKLFDYTIDDLLEIESGSQVVVPGILKNVREVIDRKNQKMLFATLEDFT 995 Query: 1025 KEYEANFF 1032 E E F Sbjct: 996 GEAEITVF 1003 >gi|15601899|ref|NP_244971.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp. multocida str. Pm70] gi|14194670|sp|Q9CPK3|DPO3A_PASMU RecName: Full=DNA polymerase III subunit alpha gi|12720237|gb|AAK02118.1| DnaE [Pasteurella multocida subsp. multocida str. Pm70] Length = 1159 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1051 (40%), Positives = 618/1051 (58%), Gaps = 52/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S++ G + ++ + A+ +TD N + F +A +AG++ Sbjct: 4 PRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALSAGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D+ ++ L G PF + LL GY + L+S+ Y ++G Q Sbjct: 64 PIIGA--DVLVRSEL----CGDEPF----ELTLLAKNNIGYHNITLLLSKAY--ERGYQD 111 Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + + +WL E EG+I+L+GG +G + + + E + ++ F D Y++L Sbjct: 112 LPYLDQAWLAE-HREGIIVLSGGHNGDVGKKLLKGHAAEIESAVAFYQDFFPDHFYLSLS 170 Query: 188 RHRGYDRYRESQVVQLAYT----HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 R RY E + V LA T LP+VATN+ LFL E+D+EAH++ +A+ S + Sbjct: 171 RT---GRYEEERYVSLALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDP 227 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP++ T Y ++ EM +F+D+P ALENT+ IA+RC+ +++ LP+F + Sbjct: 228 KRPKLYTNQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPTGDL-- 285 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 286 ---STEDFLVKKSKEGLEERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 403 VDFCMDGRDRVIDHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP ++ +A A + + + +D V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTLA-KAFAAEPQLQAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R K Sbjct: 522 TDFSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKP 581 Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VD++ IP DD ++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 582 PVDIATIPLDDPASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVVYN--NRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V N +RK+G E + P + P+L+ T GVI+YQEQVMQIAQ L+GY+L Sbjct: 642 LESGMVQNFIDRKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+E F GA + G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT EMDN +KI + + +++ PP +NT Sbjct: 762 AYALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVAPPDINTGKHH 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A F L D C+RVD KK+NRR ESL Sbjct: 822 FSVNEYGEIVYGIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + +GA D G R L ++L++ K + K+ ++F + D +EK Sbjct: 882 ILSGAFDKLGPHRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHED---VEKAYA 938 Query: 946 E----NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + V E E+ LG Y S HP+ Y L ++ V RG ++ ++ Sbjct: 939 STPRWSEKVILEGERETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLL 998 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 VS + T+KG+R+G T + + + F Sbjct: 999 VSSRFAVTKKGNRLGIATLDDRSGRLDITLF 1029 >gi|330445160|ref|ZP_08308812.1| DNA polymerase III, &alpha subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489351|dbj|GAA03309.1| DNA polymerase III, &alpha subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1159 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1049 (39%), Positives = 628/1049 (59%), Gaps = 47/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + I+ K + PA+AITD NL ++F A AG++ Sbjct: 4 PRFIHLRVHSDFSMIDGLAKVKPIVKKASDLGMPALAITDFTNLCGLVKFYFAAHDAGMK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + G F + +L + EGY+ L L+S Y + Sbjct: 64 PIIGADFKV------QSAEMGDELF----ELTILAANNEGYKNLTLLISEAYQRGHVQHL 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL EGLI+L+GG +G + +A + ++ + + +K F D Y+ L R Sbjct: 114 PVIDKEWLIN-HREGLIVLSGGKNGDVGKALLKGNQKMVDSFISFYKTHFPDSYYLELVR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA +LP+VATN+ L+ + ++AH++ +A+ + +RP+ Sbjct: 173 TGRADEEAYLHFAVELAEKEDLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDPNRPK 232 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + YL++ EM +F+D+PEAL+N+VEIA+RC+ +++ LP F + Sbjct: 233 LYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDM-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + +Y +RLD EL V+ +M F GYFLIV +F Sbjct: 288 IEDFLVMKSKEGLEERLEFLFPDPEVRAARRPEYDERLDVELQVVNQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC Sbjct: 348 IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P +P Sbjct: 408 MDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + ++ AD V L+++ + LEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLGQSYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R ++ V++ Sbjct: 527 PLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLIEQGKEPVNI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + I DD +++ +L + +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIAMDDPKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +V N +RK+G+E + S+ ++DP T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 647 MVDNFIDRKHGREAVSYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFEEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +KI + + N++++PP VN Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMNLKLLPPDVNKGLYR 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D + Y + A+KGVG +I+ A F L DFC+R+D+KK+N+RVLE L Sbjct: 823 FNVDDEGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + +GA+D G +R +L +LD+ K A + ++F +++ + ++ Sbjct: 883 IKSGAMDRLGPNRAAMLATLDDAIKAASQHHQAEAFGQTDMFGVLTAA-PEEVEHKYANI 941 Query: 946 ENS--SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 S V E E+ LG Y +GHP++ Y P L+ +++ T R +A +V++ Sbjct: 942 PESPDKVWLEGERETLGLYLTGHPINAYIPELKHYTTWRLKDAQQTGRDKVATVAGLVIA 1001 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1002 ARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|301063202|ref|ZP_07203753.1| putative DNA polymerase III subunit alpha [delta proteobacterium NaphS2] gi|300442697|gb|EFK06911.1| putative DNA polymerase III subunit alpha [delta proteobacterium NaphS2] Length = 1155 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1048 (40%), Positives = 631/1048 (60%), Gaps = 48/1048 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA+ ++ +L+K A ++AITD N+F ++F +A AGI+PI Sbjct: 6 FVHLHVHTEYSLLDGAIRIDRMLEKAKAQGMDSVAITDHGNMFGVVDFFDRAAKAGIKPI 65 Query: 71 IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-K 126 IGC++ + D +D N G P +VLLV +GY+ L LV+ L QG Sbjct: 66 IGCEVYVAPGDRRDRTPSQNGG----PNAYHLVLLVMNEQGYKNLSTLVTLGNL--QGFY 119 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R+ +S L+E +GL+ L+ +G + A+++ +F GDR ++ Sbjct: 120 YHPRVDMSALREY-NQGLVALSACLAGHVPYLIRNGQMDAAKEKAREMASVFDGDRFFLE 178 Query: 186 LQRHRGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 LQ ++ E +VV +L+ +P+VATN+ +L+ EDYEAHDVL+ + V Sbjct: 179 LQA----NKMAEQKVVNRGLRELSKDLSIPMVATNDCHYLNREDYEAHDVLLCIQTGKSV 234 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 ++ R R T + Y K R EM D EAL NT +AR C + + RF E + Sbjct: 235 DEEKRLRFTSNEFYFKTRREMEEALPDDAEALNNTAHVARLCQYEM--------RFGEYK 286 Query: 300 CDDIQKEEENELRNKAVA----GLEVRLAQGAIAKGYHA----QDYRQRLDFELNVIARM 351 E+ L + +A GL RLAQ +G ++Y +RL +EL +I +M Sbjct: 287 FPVFHVPEKQSLNDMLMALSRKGLARRLAQKEDEEGPIGPELRREYEERLQYELEIILKM 346 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F+GYFLIVADFI++A ++I VGPGRGS AGS+ AY L IT+I+P+++ LLFERFLNP Sbjct: 347 GFAGYFLIVADFIEYALNHDIAVGPGRGSAAGSLVAYCLNITNIEPIKYGLLFERFLNPA 406 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDFC + RD+VI+YV +KYG V+QIITFG+++A+ +RDVGR L +P S+ Sbjct: 407 RISMPDIDIDFCINGRDQVIQYVADKYGRNNVSQIITFGTMKARGVIRDVGRTLNVPLSE 466 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 VDR+ KL+P P + +AI ++ + A +LL IS+ LEGL RHASTHA G Sbjct: 467 VDRIAKLVPEGPGVKLD-RAIREEPELKSLENAPGRSQKLLSISRSLEGLARHASTHACG 525 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-A 590 +VI DRPL++ +P+Y+ + ++ + QF M +EK GLIKFDFLGLKTLT+L+++L + A Sbjct: 526 VVISDRPLTEYLPLYKGSKGEI-MAQFTMDKVEKLGLIKFDFLGLKTLTVLKEALKLIEA 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 G+K+DL+ I +D TY L T G+FQLESSGM++ L + P+ EDIIALV+LY Sbjct: 585 SAGLKIDLNRISLEDKGTYQLCADGKTTGVFQLESSGMKELLRKLNPEIFEDIIALVALY 644 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+ + +V + N K+GK ++ P + P+LKET GVI+YQEQVM+IAQ+L+ Y+++ Sbjct: 645 RPGPLGSNMVDDFINGKHGKIRVSYFLPQLKPILKETYGVILYQEQVMKIAQVLANYTMA 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 EAD LR+A+GKK E M + + RFI GA +NG+S +A +F L+ KF YGFNKSH+AA Sbjct: 705 EADELRKAVGKKKPEVMARHRARFIDGAKENGVSADMAEKLFGLIEKFGGYGFNKSHSAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+I+YQTA++K HYPV+F+ A +TL+M N +K K + R IQI+PP VN DF Sbjct: 765 YAMIAYQTAYLKAHYPVQFMCALLTLDMGNQDKTIKNIAECRTMGIQILPPDVNESQADF 824 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCSRVDSKKLNRRVLESLV 886 V +++I + LAA+K VG ++E DK F L DFC R++ K+NRRVLE L+ Sbjct: 825 SVVEDQIRFGLAAVKNVGQKAVEMLIE-ERDKHGHFKGLLDFCRRMEGSKVNRRVLEGLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKY-AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 GA D R +L + LD+ K + N+ N ++ E G + L Sbjct: 884 QCGAFDFTNAFRSRLFEGLDDALKLCGARHDPNQLNMFGSLELGE-GEAGGLLELPDLPE 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E+ LGFY +GHPL+ ++ +++ + + ++LA +V S + Sbjct: 943 WEEKEKLRREKEALGFYITGHPLEGFQKAIKRFATCLVNDLPTQNDKDQVKLAGVVESLK 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K+T++G ++ + + E FP Sbjct: 1003 LKRTKRGDKMAIMHLEDLTGSTEVVVFP 1030 >gi|157962689|ref|YP_001502723.1| DNA polymerase III subunit alpha [Shewanella pealeana ATCC 700345] gi|157847689|gb|ABV88188.1| DNA polymerase III, alpha subunit [Shewanella pealeana ATCC 700345] Length = 1177 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1049 (40%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 ++ P FVHL+VHS +S+ +G + I+ K+A PA+A+TD N+ ++F + Sbjct: 20 HIMSEPRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAVALTDQTNMCGLVKFYEACH 79 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++PIIG + K P F SI L GY L L+S YL Sbjct: 80 GNGVKPIIGTDFWV------------KVPGFDEFCSITALAMDNTGYSNLTLLISDAYLR 127 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 I WL + +EGLI+L+G G + RA + + + +K F DR Sbjct: 128 GNINDKAVIDHEWLAKY-SEGLILLSGAKDGDVGRALLKENQNQVDSLIEFYKTHFPDRY 186 Query: 183 YVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ L R D R + + LA +LP+VATN +F E ++AH++ +A+ ++ Sbjct: 187 YLELLRTGRPDEERYLHMAIALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIYDGFTLA 246 Query: 242 QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 RP+ D Y K+ EM +F D+PEA++NTVEIA+RC+ +++H LP F + Sbjct: 247 DPRRPKKYSDQQYFKSSDEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYFLPNFPTGDL 306 Query: 301 DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E+ L + + GLE RL + +Y +RLD EL VI +M F GYF Sbjct: 307 -----TIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGYF 361 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 362 LIVMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPD 421 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC DRRDEVI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K Sbjct: 422 FDVDFCMDRRDEVIDHVADLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 481 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP +P ++ +A + +E+ D V L+++ + LEG+ R+A HA G+VI Sbjct: 482 MIPAEPGMTLA-KAFEVEPGLQESYDGDEDVKDLIDMCRILEGVTRNAGKHAGGVVIAPT 540 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + K Sbjct: 541 KITDFSPIYCDTEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKDKNG 600 Query: 596 ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 V + I D + + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RP Sbjct: 601 EERVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 660 Query: 653 GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+L+GY Sbjct: 661 GPLQSGMVDNFIERKHGREEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGY 720 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ F +GA +NG+ +++ IF+L+ KFA YGFNKSH Sbjct: 721 TLGGADMLRRAMGKKKPEEMAKQRGTFEAGAIENGVDGPLSMKIFDLVEKFAGYGFNKSH 780 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++SYQT W+KTHYP +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 781 SAAYALVSYQTLWLKTHYPAQFMAAVMSADMDNTDKIVTLVDECERMGMPLLPPDVNKGL 840 Query: 826 VDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D+ I Y + A+KGVG I++A + PF L DFC+R+D KKLNRRV+E Sbjct: 841 FRFTVDDDLNIVYGIGAVKGVGEGPVDSILKARENGPFIDLFDFCARIDLKKLNRRVIEK 900 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943 L+ AGALD G R ++ +L + A K ++F D K + Sbjct: 901 LICAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVEC 960 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + V E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ Sbjct: 961 TPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVA 1020 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GS++G VT + + E F Sbjct: 1021 TRVMMTKRGSKMGLVTLDDKSARLEVMLF 1049 >gi|261868771|ref|YP_003256693.1| DNA polymerase III subunit alpha [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414103|gb|ACX83474.1| DNA polymerase III subunit alpha [Aggregatibacter actinomycetemcomitans D11S-1] Length = 1158 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1053 (40%), Positives = 621/1053 (58%), Gaps = 56/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHLQVHS +S+++G + ++ + A+ +TD N + F +A ++G++ Sbjct: 4 PRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D+ +Q L G F + LL EGY+ + L+S+ Y ++G Sbjct: 64 PIIGT--DVLVQSAL----CGDEKF----RLTLLAKNNEGYKNITLLLSKAY--ERGYAD 111 Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL E G+I+L+GG +G + + ++ + + +++ F D Y+ L Sbjct: 112 WPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTLT 170 Query: 188 RHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R D R ++LA +LP+VATN+ FL ED+EAH++ +A+ + RP Sbjct: 171 RTGRPDEERYIKAALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRP 230 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 ++ T Y ++ EM +F+D+P ALENTV IA+RC+ +++ LP+F + Sbjct: 231 KLYTSQQYFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGEYFLPQFPTGDL----- 285 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L +A GLE RL + A+ +Y +RL EL+VI +M F GYFLIV + Sbjct: 286 TTEDYLVKRAKDGLEERLKVLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVME 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 346 FIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI +V YGH V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P D Sbjct: 406 CMDGRDRVIDHVAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPD 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A + + +E AD V ++++++KLEG+ R+A HA G+VI ++ Sbjct: 466 PGMTLA-KAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R K VD Sbjct: 525 SPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKLLVD 584 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +S IP DD +++ +L T +FQLES GM+ ++ ++PDC EDIIALV+L+RPGP+ + Sbjct: 585 ISAIPLDDQQSFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQS 644 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L A Sbjct: 645 GMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 705 DLLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAYA 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+AA MT EMDN +KI + + ++++PP +NT F V Sbjct: 765 LVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFSV 824 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +N I Y + AIKGVG ++EA D F +L D C+RVD KK+NRR ESL+ + Sbjct: 825 NENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKS 884 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D G R L Q+L++ + + K+ ++F +T VENS Sbjct: 885 GAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFG--------VLTETNEEVENS 936 Query: 949 SVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 + E+ LG Y S HP+ Y L +E V RG + Sbjct: 937 YANIAPWTEKTILDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASG 996 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + T+KG+ IG T + + + F Sbjct: 997 LVINTRVAVTKKGNHIGIATIDDRSGRLDLTLF 1029 >gi|297538821|ref|YP_003674590.1| DNA polymerase III subunit alpha [Methylotenera sp. 301] gi|297258168|gb|ADI30013.1| DNA polymerase III, alpha subunit [Methylotenera sp. 301] Length = 1169 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/983 (42%), Positives = 605/983 (61%), Gaps = 38/983 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K P FVHL+ HS YS+++G + +++ + + D+ PA+A+TD +NLF A++F + A G Sbjct: 10 KQPIFVHLRCHSEYSIVDGIVRIDDYVKQALNDKMPALALTDLSNLFGAIKFYKTARGKG 69 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+GC ++ + N PT ++LL + GY L +L+SR YL +Q + Sbjct: 70 IKPILGC--------DIWLENTANRDQPT--RLLLLCQSHAGYLLLCQLLSRAYLSNQYR 119 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 W E GTEGLIML+G +G + +A ++ +A K +++ LF DR Y+ + Sbjct: 120 GRAEFKREWFVECGTEGLIMLSGAIAGDVGQACTQDNLALATKLAQSWENLFPDRFYLEV 179 Query: 187 QR-----------HRGYDRYRES---QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 QR +E+ QV +A++ LP+VAT+ F++ +D+ AH+ Sbjct: 180 QRTASVAESSTPESNALQHQQENYIQQVRSIAHSLNLPIVATHPIQFITPDDFRAHEART 239 Query: 233 AVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 ++ V++ RP+ T + Y K +++M ++F D+PEAL N+VEIA+RC+ +L + Sbjct: 240 CISEGYVLADTRRPKNFTTEQYFKPQADMATLFEDIPEALTNSVEIAKRCNLMLTLGKNY 299 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 LP F + + + E R + LEV L + Y RLDFE VI +M Sbjct: 300 LPNFPTPNNESLNEYLIAEARRGLLQRLEV-LYPNEEVRAAKKPAYDARLDFETKVINQM 358 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F+GYFLIVADFIQWAK N +PVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPD Sbjct: 359 GFAGYFLIVADFIQWAKGNGVPVGPGRGSGAGSVVAYSLKITDLDPLEYNLLFERFLNPD 418 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFDIDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P+ Sbjct: 419 RVSMPDFDIDFCQEGRDRVIDYVKQKYGLDAVSQIATFGTMAAKAVIRDVGRVLDLPFYF 478 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 VD + KLIP + +S A+ + + E R + + LLE++ +LEGL R+ HA G Sbjct: 479 VDGISKLIPLELGITLS-DALVKEPQLAERRENEEELKELLELALRLEGLVRNIGMHAGG 537 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLA 590 ++I +S P+Y V+Q++ +E GL+KFDFLGL+TLT+L+ +L + Sbjct: 538 VLISPGKISDFSPVYCQADGASLVSQYDKDDVEAVGLVKFDFLGLRTLTILELALANANK 597 Query: 591 QRGVK----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 QR + + +P +D T+ LL T T +FQLES GM+ L+ PDC EDIIAL Sbjct: 598 QRATEGLAPLSFETLPLNDKPTFQLLKTANTTAVFQLESKGMKDMLKQALPDCFEDIIAL 657 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 V+LYRPGP+D I + RK+GK+++ HPL +P+LKET G+ +YQEQVMQIAQ+++GYS Sbjct: 658 VALYRPGPMDLIPDFCRRKHGKQRVEYPHPLTEPILKETYGIAVYQEQVMQIAQVVAGYS 717 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEMD Q++ F+ GA+KN +++ A+ +F+LL KFA YGFNKSHA Sbjct: 718 LGGADLLRRAMGKKKVEEMDAQRKTFVEGATKNNMTERQAMELFDLLEKFAGYGFNKSHA 777 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA+++YQTA++K HYP FLA++M+ +M+N + ++ F +D ++I+ P VN Sbjct: 778 AAYALVAYQTAYLKAHYPAAFLASTMSADMNNTDSVRIFYEDCAPNQVKILSPDVNQSEY 837 Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884 F + N++ Y L A+KG G I++A D PF L DFC+R+D +K+NRRV+ES Sbjct: 838 KFTPISKNQVLYGLGAVKGTGQAAIEVILQARRKDGPFKDLFDFCNRLDLRKVNRRVVES 897 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ AGA D SR LL + E+N N ++N E + I L Sbjct: 898 LIRAGAFDKLSPSRNALLAG---VAMAMAAAEQNSANSNQNSLFGEVADKAANI-LPMVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHP 967 R + E+ LGFYFSGHP Sbjct: 954 DWTEQQRLQEEKAALGFYFSGHP 976 >gi|212636262|ref|YP_002312787.1| DNA polymerase III subunit alpha [Shewanella piezotolerans WP3] gi|212557746|gb|ACJ30200.1| DNA polymerase III alpha subunit [Shewanella piezotolerans WP3] Length = 1156 Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1043 (40%), Positives = 609/1043 (58%), Gaps = 37/1043 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL K++ PA+A+TD N+ ++F AGI+ Sbjct: 4 PLFVHLRVHSDFSMSDGLSKVKPILAKVSELGMPAVALTDQTNMCGLVKFYGGCHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + + ++ SI + EGY L L+S YL Sbjct: 64 PIIGTEFWVQVPGVDELC-----------SITAIAMNNEGYSSLTLLISDAYLRGHIDDR 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + +GLI+L+GG G + RA ++ + + ++ F DR Y+ L R Sbjct: 113 AVIDHEWLAKY-NDGLILLSGGRHGDVGRALLKDNKAQVDSLIEFYQTHFPDRYYLELLR 171 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D R + V+LA +LP+VATN +F E +EAH++ +A++ ++ RP+ Sbjct: 172 TGRPDEERYLHMAVELAQAKDLPVVATNQVVFNKPEQFEAHEIRVAISDGFTLADPRRPK 231 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D Y K+ EM +F D+PEA++NTVEIA+RC+ ++++ LP F + Sbjct: 232 KYSDQQYFKSSEEMCELFEDIPEAIQNTVEIAKRCNVTVRLNEYFLPNFPTGDL-----T 286 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L + + GLE RL + +Y +RLD EL VI M F GYFLIV +F Sbjct: 287 IEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINEMGFPGYFLIVMEF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 347 IQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRRDEVI +V + YG + V+QIITFG++ AKA +RDVGR PY VDR+ K+IP +P Sbjct: 407 MDRRDEVIDHVADLYGRDAVSQIITFGTMAAKAVIRDVGRVQGHPYGFVDRISKMIPAEP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + +E+ V L+++ + LEG+ R+A HA G+VI ++ Sbjct: 467 GMTLA-KAFEVEPALQESYDGSEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKITDFS 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + K V + Sbjct: 526 PIYCDSEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNAVKDKNGEDRVRI 585 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I D + + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 586 ESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 645 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 646 MVDNFIERKHGREEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGYTLGGAD 705 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F G+ KNG+ +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 706 MLRRAMGKKKPEEMAKQRGTFEEGSIKNGVDGPLSMKIFDLVEKFAGYGFNKSHSAAYAL 765 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP +F+AA M+ +MDN +KI + + + ++PP VN F V Sbjct: 766 VSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFRFTVD 825 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 D+ I Y + A+KGVG I+EA D PF L DFC+R+D KKLNRRV+E L+ AGA Sbjct: 826 DDLNIVYGIGAVKGVGEGPVDSILEARKDGPFTDLFDFCARIDLKKLNRRVIEKLICAGA 885 Query: 891 LDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 LD G R L+ +L + I+ Q + +H+ DK + Sbjct: 886 LDNLGPHRAALVATLPEAIRAADQHAKAEAIGQHDMFGLLNNEPEDDKQQFVDCTPWPDK 945 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 V E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + T Sbjct: 946 VWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTVKAAGLVVATRVMMT 1005 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 ++G+++G VT + + E F Sbjct: 1006 KRGAKMGLVTLDDKSARLEVMLF 1028 >gi|251791881|ref|YP_003006601.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700] gi|247533268|gb|ACS96514.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700] Length = 1158 Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1052 (40%), Positives = 625/1052 (59%), Gaps = 54/1052 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHLQVHS +S+++G + ++ + A+A+TD N + F +A ++G++ Sbjct: 4 PRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMALTDFTNFCGLVRFYGEALSSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D+ +Q +L G+ F + LL EGY+ + L+S+ Y ++G Sbjct: 64 PIIGA--DVLVQSDL----CGEERF----RLTLLAKNNEGYKNITLLLSKAY--ERGYAD 111 Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 V I WL E T G+I+L+GG +G + + +++ + + +++ F D Y+ L Sbjct: 112 VPYIDQQWLVEHRT-GVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYREFFPDHFYLTLT 170 Query: 188 RHRGYDRYRESQVVQLAYT----HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 R R E + +Q A T +LP+VATN+ FL E+D+EAH++ +A+ + Sbjct: 171 RT---GRPDEEEYIQAALTLAEQTDLPVVATNDVCFLQEDDFEAHEIRVAIHDGYTLEDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ EM +F+D+P ALENT+ IA+RC+ +++ LP+F + Sbjct: 228 KRPKNYTGQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPTGDL-- 285 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 286 ---STEDYLVKRAKEGLEERLKVLFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 403 VDFCMDGRDRVIEHVAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLV 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP ++ +A + + +E AD V ++++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTLA-KAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R K Sbjct: 522 TDFSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKP 581 Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VD++ IP DDH+++ +L T +FQLES GM+ ++ ++PDC EDIIALV+L+RPGP Sbjct: 582 LVDINTIPLDDHQSFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 642 LQSGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAKQRSVFEEGAIKNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT EMDN +KI + + ++++PP +NT Sbjct: 762 AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHH 821 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V +N I Y + AIKGVG ++EA D F +L D C+RVD KK+NRR ESL Sbjct: 822 FSVNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + +GA D G R L ++L++ + + K+ ++F G ++ + S Sbjct: 882 IKSGAFDKLGPHRAALQRNLEDALRASDQHAKDEALGQTDMF----GVLTETNEEVEHSY 937 Query: 946 EN-----SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 N + E+ LG Y S HP+ Y L +E RG + + Sbjct: 938 ANIAPWTEKTILDGERETLGLYLSSHPVSRYLKELSHYSPVRLKELTPNYRGQMSTASGL 997 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 VV+ + T+KG+ IG T + + + F Sbjct: 998 VVNTRIAVTKKGNHIGIATIDDRSGRLDLTLF 1029 >gi|290473672|ref|YP_003466544.1| DNA polymerase III subunit alpha [Xenorhabdus bovienii SS-2004] gi|289172977|emb|CBJ79748.1| DNA polymerase III, alpha subunit [Xenorhabdus bovienii SS-2004] Length = 1144 Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1036 (40%), Positives = 615/1036 (59%), Gaps = 46/1036 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G +++ K+A PA AITD NL ++F A +AGI+PIIG D ++ Sbjct: 1 MIDGLAKTGSLIKKVAKLDMPAFAITDFTNLCGLVKFYGSAHSAGIKPIIGA--DFYVES 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + +L EGYQ L L+S Y G I WL + Sbjct: 59 DLLGDEYAH--------LTILARNNEGYQNLTFLISEAYQKGYGAIGPTIKQEWLIKY-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200 GLI+L+GG G + + + +A++ L +++ F D Y+ L R D Sbjct: 110 AGLILLSGGRMGDVGKFLLRGNRAMADQCLDFYQEHFPDSYYLELIRTGRQDEENYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V++A LP+VATN+ FL +D+EAH++ +A+ ++ RP+ +P YL++ E Sbjct: 170 VEVAAEKNLPVVATNDVCFLESDDFEAHEIRVAIHDGYTMADPKRPKNYSPQQYLRSEQE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEAL+N+VEIA+RC+ +++ LP+F + E+ L K+ GL Sbjct: 230 MCELFSDIPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDM-----STEDYLVEKSKQGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EDRLNFLYPDPQIRAEKRSEYDERLDIELEVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFDVDFCMEKRDQVIDHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFAAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVRVLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPIYCDPEGLNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +LD + R +D++ IP DD ++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALDMVNARRTHKNLEPIDITAIPLDDQISFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 ELSYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKQPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA GI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAISQGINGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V D + I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDESEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+RVD+KKLNRRV+E L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAILEARQKEGHFKELFDLCARVDTKKLNRRVMEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-----SVRFENEQR 957 SL++ K A K ++F G ++K + S ++ V + E+ Sbjct: 884 SSLEDALKAADQHAKAEAIGQTDMF----GVLAEKPEQVELSYASTPKWPEQVVLDGERE 939 Query: 958 VLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LG Y +GHP+ Y K I R ++ T RG + +V++ + T++G+RIG Sbjct: 940 TLGLYLTGHPITSYLKEIERYTNGLRLKDVSPTPRGQVTTVVGLVLASKILTTKRGNRIG 999 Query: 1017 WVTFSEPAKEYEANFF 1032 T + + E F Sbjct: 1000 ICTLDDRSGRLEIMLF 1015 >gi|145638463|ref|ZP_01794073.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittII] gi|145272792|gb|EDK12699.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittII] gi|309751597|gb|ADO81581.1| DNA polymerase III alpha subunit [Haemophilus influenzae R2866] Length = 1159 Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1057 (40%), Positives = 619/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K T G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSTLCGDEYF----YLTLLAKNNEGYKNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E EG+I+L+GG+ G + + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R D R Q ++LA +H LPLVATN+ +FL +D+EAH++ +A+ + Sbjct: 168 LALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ EM +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+++++KLEG+ R+A HA G+VI Sbjct: 463 IPLDPGMTLA-KAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFKEGAVKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ K + K+ ++F T D Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQTDMFGVLTETHED-------- 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++VS + T+KG+R+G T + + + F Sbjct: 994 TVAGLLVSSRIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|313201481|ref|YP_004040139.1| DNA polymerase III subunit alpha [Methylovorus sp. MP688] gi|312440797|gb|ADQ84903.1| DNA polymerase III, alpha subunit [Methylovorus sp. MP688] Length = 1133 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/965 (42%), Positives = 604/965 (62%), Gaps = 35/965 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + + + + AAD+ PA+A+TD +NLF A++F + A G++P++GC L ++ + Sbjct: 1 MVDGTVRIGDYVKAAAADRMPALALTDLSNLFGAVKFYKSARGKGLKPVLGCDLWLENET 60 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 N P+ ++LL T GY +L EL+SR YL +Q + I WL E G Sbjct: 61 NRDQ------PY----RLLLLCQTHAGYLKLCELLSRAYLENQHRGRAEIKRQWLVEAGG 110 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLIML+G +G + +A + Q A + LF +R Y+ LQR + S+ Sbjct: 111 EGLIMLSGAMAGDVGQAILQGNQQAALALAQQWAALFPNRFYIELQRAGHAQQEFYISRA 170 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 + LA +LP+VAT+ F+ +D++AH+ + +A V++ RP+ TP+ + K ++E Sbjct: 171 LALAGELDLPVVATHPVQFMQADDFKAHEARVCIAEGYVLADNRRPKHFTPEQFFKTQAE 230 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M ++F+D+P+AL N+VEIA+RC+ L + LP+F + + + L +A GL Sbjct: 231 MATLFADVPQALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESL----DEYLVVQAKLGL 286 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + Y RL+FE N+I +M F GYFLIVADFI WAK N +PVGP Sbjct: 287 EKRLQVLYPDEAVRDAKRPVYLTRLEFETNIIIQMGFPGYFLIVADFINWAKNNGVPVGP 346 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGSV AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ+ RD VI YV++ Sbjct: 347 GRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDIDFCQEGRDRVIDYVKH 406 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 KYG V+QI TFG++ AKA +RDVGR L +P++ VD + KLIPN+ +S A+ + Sbjct: 407 KYGLASVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPNELGITLS-DALEKEP 465 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + +E R + V+ LLE++ +LEGL R+ HA G++I +S P+Y + V+ Sbjct: 466 QLKERREQEEEVNELLELALRLEGLTRNIGMHAGGVLISPGKISDFSPIYCQQNGESLVS 525 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDLSLIPFDDHETYHL 611 Q++ +E GL+KFDFLGL+TLT+L +L+ QR +K +D +P +D TY L Sbjct: 526 QYDKDDVEAVGLVKFDFLGLRTLTILAMALENANVQRALKELPPLDFETLPINDKPTYQL 585 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L + T +FQLES GM+ L+ +PDC EDIIALV+LYRPGP+D I + RK+G++++ Sbjct: 586 LKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMDLIPDFCRRKHGQQRV 645 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 HP +P+LKET G+++YQEQVMQIAQ+++GYSL AD+LRRAMGKK KEEMD Q+ Sbjct: 646 EYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRAMGKKKKEEMDAQRAV 705 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 F+ GA KNG + A +F+L+ KFA YGFNKSHAAAYA+++Y TA++K HYP FLAA+ Sbjct: 706 FVEGAVKNGTPEKQAAELFDLMEKFASYGFNKSHAAAYALVAYHTAYLKAHYPAAFLAAT 765 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTA 850 M+ +M+N + + F D ++++ P +N FK + D ++ Y L A+KG G Sbjct: 766 MSADMNNTDSVHIFYDDCAANGVEVLAPDINQSEFRFKPISDKQVLYGLGAVKGTGWAAI 825 Query: 851 RHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 I+ A A+ PF L DFC R+D +K+NRRV+ESL+ AGA D +R LL + Sbjct: 826 EVILAAREAEGPFKDLFDFCRRLDLRKVNRRVIESLIRAGAFDKLEPNRAALLAGVSLAI 885 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHP 967 A+ + + ++F G SD + TL K + + + + E+ LGFYFSGHP Sbjct: 886 SAAE--QSGAASGQNSLF----GEMSDSVAHTLPKVNAWSEQEKLQQEKSALGFYFSGHP 939 Query: 968 LDVYK 972 + YK Sbjct: 940 YEGYK 944 >gi|315633674|ref|ZP_07888964.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis ATCC 33393] gi|315477716|gb|EFU68458.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis ATCC 33393] Length = 1172 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1049 (40%), Positives = 621/1049 (59%), Gaps = 48/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHLQVHS +S+++G + ++ + A+ +TD N + F +A ++G++ Sbjct: 18 PRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMGLTDFTNFCGLVRFYGEALSSGVK 77 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D+ +Q+ L G+ F + LL EGY+ + L+S+ Y ++G Sbjct: 78 PIIGA--DVLVQNEL----CGEERF----RLTLLAKNNEGYKNITLLLSKAY--ERGYAD 125 Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 V I WL E G+I+L+GG +G + + +++ + + + + F D Y+ L Sbjct: 126 VPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYHEFFPDHFYLTLT 184 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R + + ++LA +LP+VATN+ FL ED+EAH++ +A+ + RP Sbjct: 185 RTGRPDEEHYIQAALELAEREQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKRP 244 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + T Y ++ EM +F+D+P ALENT+ IA+RC+ +++ LP+F + Sbjct: 245 KNYTSQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPKFPTGDL----- 299 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L +A GLE RL + +Y +RL EL+VI +M F GYFLIV + Sbjct: 300 STEDYLVKRAREGLEARLKVLFPDENERAARRAEYDERLQVELDVINQMGFPGYFLIVME 359 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 360 FIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 419 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P D Sbjct: 420 CMDGRDRVIEHVAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPPD 479 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A + + +E AD V ++++++KLEG+ R+A HA G+VI ++ Sbjct: 480 PGMTLA-KAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITDF 538 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R K VD Sbjct: 539 SPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLVD 598 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DDH+++ +L T +FQLES GM+ ++ ++PDC EDIIALV+L+RPGP+ + Sbjct: 599 INTIPLDDHQSFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQS 658 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L A Sbjct: 659 GMVDNFIDRKHGREEVSYPDANYQHETLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGA 718 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+AAYA Sbjct: 719 DLLRRAMGKKKPEEMAKQRSVFEEGAIKNGIDGDLSMKIFDLVEKFAGYGFNKSHSAAYA 778 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+AA MT EMDN +KI + + ++++PP +NT F V Sbjct: 779 LVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFSV 838 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +N I Y + AIKGVG ++EA D F +L D C+RVD KK+NRR ESL+ + Sbjct: 839 NENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIKS 898 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN- 947 GA D G R L Q+L++ + + K+ ++F G ++ + S N Sbjct: 899 GAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQTDMF----GVLTETNEEVEHSYANI 954 Query: 948 ----SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + E+ LG Y S HP+ Y L +E RG + +VV+ Sbjct: 955 APWTEKTILDGERETLGLYLSSHPVSRYLKELSHYSPMRLKELTPNYRGQMSTASGLVVN 1014 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+ IG T + + + F Sbjct: 1015 TRIAVTKKGNHIGIATIDDRSGRLDLTLF 1043 >gi|254513858|ref|ZP_05125919.1| putative DNA polymerase IIIalpha subunit subfamily [gamma proteobacterium NOR5-3] gi|219676101|gb|EED32466.1| putative DNA polymerase IIIalpha subunit subfamily [gamma proteobacterium NOR5-3] Length = 1168 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1029 (40%), Positives = 616/1029 (59%), Gaps = 45/1029 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS YSL +G + + ++ ++A + PA+A+TD N + ++F + A +AG++PI Sbjct: 4 FVHLRVHSEYSLKDGLVRIKSLAARVAELEMPAVAVTDVCNFYGLIKFHKAAVSAGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G D+ + D+LK + +P + LLV EGY L L+SR Y Q R Sbjct: 64 FGA--DVWVTDSLKSDD----AYP----LCLLVMNPEGYLNLTRLLSRAYREGQTLDGPR 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + WL E G EGL+ L+ G++G + +A +A +R+ +F R Y+ L R Sbjct: 114 VLWEWLSEAG-EGLLALSCGAAGEVGQALVNEKMDLARQRMERCLAVFPGRFYLELHRTG 172 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R D + LA P+VATN+ F+ ++EAH+ + +A S V+ R R Sbjct: 173 RVGDEEHVHAALDLATQFNCPVVATNDVRFIDASEFEAHEARVCIAESRVLDDPRRQRRY 232 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + + YL++ EM +F D+PEALENT+ IARRCS +++ LP + + + + Sbjct: 233 SQEQYLRSSEEMQELFEDIPEALENTLAIARRCSMEMELGRVCLPEYPVPDGMTM----D 288 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVADFI 364 R A GL+ RL I + +AQ +YR+RLDFEL+ I M F GYFLIV DFI Sbjct: 289 TFFRESAHRGLDERLQTLQIHRRENAQALEREYRERLDFELDTIIAMGFPGYFLIVMDFI 348 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK++ IPVGPGRGSGAGS+ AY+L+ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC Sbjct: 349 RWAKEHGIPVGPGRGSGAGSLVAYSLSITDLDPIEYELLFERFLNPERVSMPDFDVDFCM 408 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RRDEVI YV + YG E V+QIITFG+L AKA +RDV R Y DRL K+IP + Sbjct: 409 ERRDEVIDYVADLYGREAVSQIITFGTLAAKAVVRDVARVQGKSYGLGDRLSKMIPFEVG 468 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +AI + ++ D + +++ +LEG+ R+ HA G+VI L+ Sbjct: 469 MTLQ-KAIEQEESLQQFLRDDGEAQEIWDMAVQLEGITRNVGKHAGGVVIAPSELTDFSA 527 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLS 599 +Y D VTQF+ +E AGL+KFDFLGL+TLT++ + + + + +D++ Sbjct: 528 LYCDGEGAGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAQGMINEIRARQDEPPLDIN 587 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DDH ++ LL + T +FQLES GM++ + ++PDC EDIIALV+LYRPGP+ + + Sbjct: 588 QIPLDDHASFELLRSAETTAVFQLESRGMKELIARLRPDCFEDIIALVALYRPGPLQSGM 647 Query: 660 VYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 V N +RK+G+EK+ H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD+ Sbjct: 648 VDNFIDRKHGREKVSYPDAEYQHELLKPVLEPTYGIILYQEQVMQIAQILAGYTLGGADL 707 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM KQ+ F +GA+ G+ +A +F+L+ KFA YGFNKSH+AAYA++ Sbjct: 708 LRRAMGKKKPEEMAKQRSVFAAGAAAKGVDADLATKLFDLVEKFAGYGFNKSHSAAYALV 767 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQTAW+K+HYP F+AA M+ E+DN +KI F ++ R+ + + P VN F V + Sbjct: 768 SYQTAWLKSHYPAAFMAAVMSSELDNTDKIVVFIEECRRMGLTVRLPDVNEGRYMFTVSE 827 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I Y L AIKG+G ++E+ + PF L DFC+R D +KLNR+ LE+LV +GA Sbjct: 828 AGEIVYGLGAIKGLGEGPVSGLLESREEHGPFHDLFDFCARTDPRKLNRKALEALVRSGA 887 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKFS 944 D G R LL +D+ + A+ NR ++F + E+G L Sbjct: 888 FDSLGTDRWILLAGIDDALRAAEQNAANRDAGMVDLFGETVQASREQG--DPYAELRHIR 945 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 R + E+ LG Y +GHP+D + +R+ + + RG N R+A +++S Sbjct: 946 PWTDRERLQGERDTLGLYVTGHPIDSCEDEIRRFVPQRLADLRPDNRG-NCRVAGLILSM 1004 Query: 1005 QQKKTRKGS 1013 + K+ +GS Sbjct: 1005 RAMKSARGS 1013 >gi|320540046|ref|ZP_08039702.1| putative DNA polymerase III alpha subunit [Serratia symbiotica str. Tucson] gi|320029895|gb|EFW11918.1| putative DNA polymerase III alpha subunit [Serratia symbiotica str. Tucson] Length = 1162 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1051 (41%), Positives = 620/1051 (58%), Gaps = 48/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + ++ + AA PA+AITD NL ++F A GI+ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGVGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG L + Q + + +L + + GYQ L L+SR Y G Sbjct: 64 PIIGADLHV----------QSDVLGDELAQLTVLATNSAGYQNLTLLISRAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGL++L+G G + + + E+ L +++ F D Y+ L R Sbjct: 114 PIIDRDWLIE-HREGLLLLSGARHGDVGKFLLRGNQPQVEQCLDFYQQYFPDCYYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA LP+VATN+ FL E+D++AH++ +A+ + RPR Sbjct: 173 TGRPDEENYLHAAVTLATERGLPVVATNDVRFLEEDDFDAHEIRVAIHEGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F D+ E Sbjct: 233 NYSPQQYMRSEDDMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQF---PTGDMTTE 289 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 + L++K GLE RL AQ +Y +RLD EL VI +M F GYFLIV +F Sbjct: 290 DFLVLKSKE--GLEERLTFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNHVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDLVIDHVSEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TL+++ +L+ + R K +D+ Sbjct: 527 PLYCDAEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLSIIDWALEMINARCAKSGEPPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLNDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM KQ+ F GA GI ++V IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKNPVEMAKQRGGFEDGAKLRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYRFHVN 826 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESLVF 887 + I Y + AIKGVG I+EA F L D C+R D KKLNRR+LE L+ Sbjct: 827 NEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIM 886 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GALD G R L+ SL + K A K ++F G S+ + S N Sbjct: 887 SGALDRLGPHRAALMNSLGDALKAADQHAKAEAIGQVDMF----GVLSEAPEQVEQSYAN 942 Query: 948 -----SSVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 V + E+ LG Y +GHP+ Y K I R G + ++ T RG +V Sbjct: 943 VPRWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLV 1002 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V+ + T++G+RIG T + + E F Sbjct: 1003 VAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1033 >gi|71892068|ref|YP_277798.1| DNA polymerase III, alpha chain [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796174|gb|AAZ40925.1| DNA polymerase III, alpha chain [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 1163 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1049 (40%), Positives = 634/1049 (60%), Gaps = 43/1049 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL VHS YS+++G ++N ++ K A + PA+A+TD NNLF ++F A +GI+ Sbjct: 4 PRFIHLHVHSDYSMIDGLATVNKLITKAAYLKMPALALTDFNNLFGFIKFYDVAYKSGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIG D +QD L M N+ PS + LV+ +GY LI L+S+ Y Sbjct: 64 PIIGA--DFLVQD-LIMDNK--------PSKLTCLVTDKQGYYHLIMLISKAYKNKCNNV 112 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 ++ I WL+E +GLI+L+GG +G I R N E+ L + K F +R Y+ L Sbjct: 113 ALMIQRHWLKEY-NKGLILLSGGRNGDIGRYLLRNEKSKIEQCLYFYSKYFPNRYYLELI 171 Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R ++ ++L+ LP+VATN+ F++E+D+ AH+V +A+ T ++ + Sbjct: 172 RTGRQHEESYLQLAIELSIAKGLPVVATNDVRFINEKDFLAHEVRVAIYAGTTLNNVQQL 231 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + ++K+ EM +FSD+PE+L N+VEIA RC+F + + LP+F C K Sbjct: 232 RKYSSQQFMKSEQEMCELFSDVPESLVNSVEIAYRCNFTIDLGGYFLPQF-PTGC----K 286 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L A GLE RL + + Y RL EL VI M F YFLIV + Sbjct: 287 SAKDFLTTHAKKGLEERLILLFPKTKERLVQRKPYDLRLKNELQVINNMNFPSYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N+IPVGPGRGSGA S+ AY L IT++DPL+F LLFERFLNP+R+SMPD DIDF Sbjct: 347 FIKWAKNNDIPVGPGRGSGASSLVAYVLKITELDPLQFDLLFERFLNPERISMPDLDIDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY+ ++R+ KLIP + Sbjct: 407 CMDHRDLVIEHVSKTYGSEAVSQIITFGTMAAKAVIRDVGRVLGHPYALINRIAKLIPLE 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + + + + D + L++++ +LEG+ R+ S HA G+VI ++ Sbjct: 467 SGITLK-KAFSIEPQLKLLYENDEDITELIDMALQLEGIVRNVSKHAGGVVIAPIKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D S P+TQF+ IE+ GLIKFDFLGL+TLT++ +L + +K +D Sbjct: 526 SPLYYDNDSIHPMTQFDKDDIERIGLIKFDFLGLRTLTIINHALKMINNTRLKQGLTIID 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I D +++H+L + T IFQLES G+++ ++ ++PDC ED+IAL++L+RPGP+ + Sbjct: 586 IHSISLHDQKSFHVLQSSETTAIFQLESRGIKELIKRLKPDCFEDLIALIALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N NRK+G E I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L +A Sbjct: 646 GMVDNFINRKHGYETISYPDAKWQHESLRPVLESTYGIILYQEQVMQIAQVLAGYTLGQA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRA+GKK E+M KQ+ F GA+KNGI T+++ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DILRRAIGKKKPEDMAKQRSFFNLGAAKNGIDNTLSMKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +ISYQT W+KTHYP EF+AA+++ +MDN+ K+ + ++ + I PP++NT F V Sbjct: 766 LISYQTLWLKTHYPAEFMAAALSSDMDNLNKVVYLIGECQKMKLIISPPNINTSQYHFYV 825 Query: 831 GDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 N+ I Y AIKG+G T+ I+ + + F L DFC R+DS K+N R++E L+ + Sbjct: 826 NANKEIVYGFGAIKGIGKTSIESIITSRNKGGNFKELFDFCIRIDSTKINHRMIEKLILS 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSV 945 GA D FG R +L+ SL+++ K A KN+ +K +IF E T + + Sbjct: 886 GACDSFGIHRSKLMASLNDVLKRANQHIKNKYSKQTDIFEMRLDESNTIAISDRDDNTPQ 945 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVS 1003 ++ + E E+ LG Y + HP Y +++ I ++ + + + ++VS Sbjct: 946 WSNQLLLEKEKEALGLYLTSHPTIQYIKTIKRCASNIVNIKDVLLETDNKILHIFGLIVS 1005 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K ++KG R+ + + + E F Sbjct: 1006 IRTKLSKKGKRVVFFILEDYSGRLEIMIF 1034 >gi|83644688|ref|YP_433123.1| DNA polymerase III subunit alpha [Hahella chejuensis KCTC 2396] gi|83632731|gb|ABC28698.1| DNA polymerase III, alpha subunit [Hahella chejuensis KCTC 2396] Length = 1158 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1049 (39%), Positives = 621/1049 (59%), Gaps = 50/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL++H+ +SL++G + + ++ K+A PA+A+TD +N+ +++ + A AG++PI Sbjct: 4 FIHLRIHTEFSLVDGLVKVKPLVKKLADMGMPAVAVTDQSNMCCLVKYYKAASGAGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +G + ++ D+ P P + L GY+ L EL+SR + Q Sbjct: 64 VGADVWVENLDD-----------PLAPFRLTLFARNETGYRNLTELISRGFTEGQSHGRA 112 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 + W+ EGL+ L+G G + +A ++A +RL + ++F D Y+ LQR Sbjct: 113 IMKKDWIA-AQAEGLLALSGSKYGDVGQALLAGKQELARERLGVWMEMFPDAYYLELQRT 171 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R D V+LA P+VATN+ FL +D+EAH+ + + + R R Sbjct: 172 GRINDEECVHASVELALETGCPVVATNDVHFLERDDFEAHEARVCIHEGRTLDDPRRERR 231 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + YLK EM +FSD+PEA+ NTVEIA+RC+ L++ LP + E I Sbjct: 232 FSEEQYLKTAEEMCELFSDIPEAIANTVEIAKRCNVSLRLGKYFLPNYPIPEGMTI---- 287 Query: 308 ENELRNK-AVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 +E K + GLE RLA Q G Q Y RL FEL++I +M F GYFLIV D Sbjct: 288 -DEFFIKVSEEGLEERLATLLKQDDPEYGNKRQSYYDRLKFELDIITQMGFPGYFLIVMD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIKWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV YG V+QIITFG++ AKA +RDV R PYS DRL KLIP + Sbjct: 407 CMEGRDRVIAYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGRPYSMGDRLSKLIPFE 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 ++ +A + RE D + E+++KLEG+ R+ HA G+VI L+ Sbjct: 467 VGMTLA-KAYEQEEPLREYLTTDEDAAEIWEMARKLEGVTRNVGKHAGGVVIAPTKLTDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRG-VKVD 597 P+Y D VTQF+ +E+AGL+KFDFLGL+TLT++ ++D + A++G +D Sbjct: 526 APLYCDETGSGLVTQFDKDDVEQAGLVKFDFLGLRTLTIVDWAVDIINRQHAEKGQPPLD 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD T++LL T +FQLES GM++ + + PDC EDIIALV+L+RPGP+ + Sbjct: 586 INFIPLDDAPTFNLLKHGETTAVFQLESRGMKELIRRLMPDCFEDIIALVALFRPGPLQS 645 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ HP + P+L+ T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 646 GMVDDFINRKHGRAELAYPHPDYQLESLKPVLQPTYGIILYQEQVMQIAQVMAGYTLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQK F+ G+ G+ + +A IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DLLRRAMGKKKPEEMAKQKAIFVEGSINQGLEQDLAEKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+K HYP F+AA +T +M N +K+ ++ R+ ++++ P VN F V Sbjct: 766 LVSYQTAWLKCHYPAPFMAAVLTADMQNTDKVVTLVEECRRMKLELVLPDVNNSSYTFTV 825 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D +RI Y L A+KG+G + I++A + PF L DFC RVD +++N+R LE+LV + Sbjct: 826 DDKHRIVYGLGAVKGLGEGPVQSILDARKEGGPFRDLFDFCQRVDLRRVNKRALEALVRS 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-----EKGTFSDKITLEKF 943 GA+D G SR +++ S++ + A +N ++F + +S ++++ Sbjct: 886 GAMDKLGPSRARMMASINEAVRRADQHSRNEDAGMLDLFGEVVPETDPNPYSATEGMQEW 945 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 S R + E+ LG Y +GHP D Y+ +R+ E N+ A +VV+ Sbjct: 946 S---DKERLKLEKETLGLYLTGHPFDEYEQEVRRFVRTPISELRPGKSPQNV--AGLVVA 1000 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K+++G IG+ T + + E FF Sbjct: 1001 VRTMKSKRGGYIGFATLDDRSGRIEVTFF 1029 >gi|32035303|ref|ZP_00135310.1| COG0587: DNA polymerase III, alpha subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208577|ref|YP_001053802.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae L20] gi|307263773|ref|ZP_07545379.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097369|gb|ABN74197.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306870894|gb|EFN02632.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 1158 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1059 (40%), Positives = 623/1059 (58%), Gaps = 72/1059 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A +G++PI Sbjct: 6 FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65 Query: 71 IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IG + + D +D ++T LL GY + L+S+ Y QG Sbjct: 66 IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109 Query: 127 QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + +WL E+ EG+I+L+GG +G + +A + A++ + +++ F + Y+ Sbjct: 110 VEFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENQAEADELVGFYQQYFPNHYYLA 168 Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 169 LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ LP F + Sbjct: 229 RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDL--- 285 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV Sbjct: 286 --STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 344 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLIP Sbjct: 404 DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 464 PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR + Sbjct: 523 DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ Sbjct: 583 VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642 Query: 656 DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++ +V N +RK+G E++ S+ P++DP T GVI+YQEQVMQIAQ+L+G Sbjct: 643 ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKS Sbjct: 699 YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 759 HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818 Query: 825 CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR Sbjct: 819 KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+++L++ K +++H + A + +T Sbjct: 879 EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930 Query: 943 FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 V+N+ E E+ LG Y SGHP+ + L E T RG Sbjct: 931 EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +A +++ + T++GSR+G T + + + + F Sbjct: 991 VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|307261584|ref|ZP_07543252.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868707|gb|EFN00516.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 1158 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1059 (40%), Positives = 623/1059 (58%), Gaps = 72/1059 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A +G++PI Sbjct: 6 FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65 Query: 71 IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IG + + D +D ++T LL GY + L+S+ Y QG Sbjct: 66 IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109 Query: 127 QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + +WL E+ EG+I+L+GG +G + +A + A++ + +++ F + Y+ Sbjct: 110 VEFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168 Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 169 LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ LP F + Sbjct: 229 RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDL--- 285 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV Sbjct: 286 --STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 344 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLIP Sbjct: 404 DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 464 PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR + Sbjct: 523 DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ Sbjct: 583 VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642 Query: 656 DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++ +V N +RK+G E++ S+ P++DP T GVI+YQEQVMQIAQ+L+G Sbjct: 643 ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKS Sbjct: 699 YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 759 HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818 Query: 825 CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR Sbjct: 819 KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+++L++ K +++H + A + +T Sbjct: 879 EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930 Query: 943 FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 V+N+ E E+ LG Y SGHP+ + L E T RG Sbjct: 931 EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +A +++ + T++GSR+G T + + + + F Sbjct: 991 VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|254468287|ref|ZP_05081693.1| DNA polymerase III, alpha subunit [beta proteobacterium KB13] gi|207087097|gb|EDZ64380.1| DNA polymerase III, alpha subunit [beta proteobacterium KB13] Length = 1156 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1032 (41%), Positives = 629/1032 (60%), Gaps = 46/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+ HS YS+ +G + L + + + ++AI+D +N+F+A++F + A + GI+PI Sbjct: 9 FIHLRCHSEYSITDGIVRLGDYVSLAKELELESLAISDLSNIFAAVKFFKLATSNGIKPI 68 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I DN ++ ++L+ +GY L +L+SR Y +Q + Sbjct: 69 IGADVYIQNDDNRDQPSR----------LLLICQNKQGYLNLSKLLSRAYTENQYRDRPE 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL GLI L+G + G I + A K+ F DR Y+ +QR+ Sbjct: 119 IKFEWLFSDFNHGLICLSGFNFGAIGQNLLSQKKDKAIHIAKQLKEAFDDRFYLEVQRYE 178 Query: 191 GYDRYRESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 + E + + QL Y ++PLVAT F+ +ED++AH+ +A V+ + R Sbjct: 179 VEKKVEEQENLVLAIAQLGYDLDIPLVATQPIQFIKKEDFQAHEAKTCIADGYVLGDQRR 238 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ T + Y K +EM +F D+P A+ NT+EI++RC+F ++ LP F E + Sbjct: 239 PKNFTAEQYFKTPAEMAVLFEDIPSAISNTLEISKRCNFEFELGNVFLPDFPIPEGLTVN 298 Query: 305 KEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVA 361 + L N A+ GLE +L K + Q+ Y RL FE+NVI +M ++GYFLIVA Sbjct: 299 EY----LENTAIEGLEKKLKNLYPEVKDFKTQEKKYLDRLHFEINVINQMGYAGYFLIVA 354 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK+NN+PVGPGRGSGAGSV A+AL ITD+DPL ++LLFERFLNP+R+SMPDFDID Sbjct: 355 DFINWAKENNVPVGPGRGSGAGSVVAFALGITDLDPLSYNLLFERFLNPERVSMPDFDID 414 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQ+ RD VI YV+ +YG++ V+QI+TFG++ A+A +RDVGR L +P+ VD + KLIP Sbjct: 415 FCQEGRDRVIEYVKERYGYDAVSQIVTFGTMAARAVIRDVGRVLDLPFPFVDGIAKLIPM 474 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + +SL+ AI + + ++ + V L +++ KLEGL R+ HA G++I +S Sbjct: 475 ELG--ISLKDAIEKEEQIQQRIKNEEEVKELFDLALKLEGLVRNVGMHAGGVLIAPGKIS 532 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----FLAQRG-VK 595 P+Y + V+QF+ +E GLIKFDFLGL+TLT+L +L+ A G Sbjct: 533 DYSPLYCQEGGEGMVSQFDKDDVESIGLIKFDFLGLRTLTILSMALNNANKMRATEGKPP 592 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 + L IP DD ET+ L+ T +FQLES GM+ L+ +PDC EDIIALV+LYRPGP+ Sbjct: 593 IYLDDIPLDDEETFEWLSNANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPM 652 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G++ + HP + +LKET G+ +YQEQVMQIAQ ++GY+L AD+LRR Sbjct: 653 DLIPDFCKRKHGQQLVSYPHPSTEGILKETYGIAVYQEQVMQIAQTVAGYTLGGADLLRR 712 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEMD Q+E FI GA++NG+ K A N+F+LL KFA YGFNKSHAAAYA I+YQ Sbjct: 713 AMGKKKVEEMDAQREVFIQGATQNGLEKQQASNLFDLLEKFAGYGFNKSHAAAYAKIAYQ 772 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNR 834 TA++K HY F+AASM+ +M+N + I D I+++PPS+N F+ + D Sbjct: 773 TAYLKRHYTSSFIAASMSADMNNTDNIALLFDDCVLNKIKLLPPSINNSVFRFQPLNDKE 832 Query: 835 IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L AIKG G I+E +++ P+ SL +FC+R+D +K+NR+V+ESL+ AGA D Sbjct: 833 ILYGLGAIKGTGLAAIEVILEDRNSNGPYQSLFEFCARLDLRKVNRKVIESLIRAGAFDE 892 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL S++ A+ + + +++F E + ++T + E S R Sbjct: 893 LEKNRASLLASINQAISLAEQSKSHMG--QDSLFGEEA---NKEVTNYVATDEWDSKRQI 947 Query: 954 NEQRV-LGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTR 1010 E++V LGFY+SGHP YK ++R M Y +S+ R NN L+ +V++ + + T+ Sbjct: 948 YEEKVALGFYYSGHPFSHYKEMVRAM----YPQSLRDARPSNNNQWLSGVVMAARNRMTQ 1003 Query: 1011 KGSRIGWVTFSE 1022 +G +I VT + Sbjct: 1004 RG-KIAIVTLDD 1014 >gi|91792926|ref|YP_562577.1| DNA polymerase III subunit alpha [Shewanella denitrificans OS217] gi|91714928|gb|ABE54854.1| DNA polymerase III, alpha subunit [Shewanella denitrificans OS217] Length = 1159 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1043 (39%), Positives = 615/1043 (58%), Gaps = 36/1043 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + IL + AIA+TD NN ++F AGI+ Sbjct: 4 PRFVHLRVHSDFSMTDGVAKVKPILAEAERQGMAAIALTDQNNFCGLVKFYGGCHNAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G + + K + ++ ++ GYQ L +++S+ YL Q Sbjct: 64 PIVGADFWMQVPGFDK----------ELCALTIIAMDNHGYQNLTQIISQAYLRGQINGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 V I WL +G+++L+G G + +A + + + ++ F R ++ L R Sbjct: 114 VVIDQDWLVTY-NQGILVLSGAKEGDVGKALLKGNLPQVDSLIQFYQTHFDGRYFLELIR 172 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D R + V LA +LP+VATN +FL +D+E+H++ +A++ ++ RP+ Sbjct: 173 TGRSDEERYLHMAVNLAKERDLPVVATNQVVFLKADDFESHEIRVAISDGYTLADPRRPK 232 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + YL++ EM ++FSD+P AL N+VEIA+RC+ ++++ LP F + Sbjct: 233 TYSAEQYLRSEEEMCALFSDIPSALSNSVEIAKRCNVTIRLYEYFLPNFPTGDL-----S 287 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L + GLE RL + AQ +Y +RL EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVVVSEKGLEERLEFLFPDEQVRAQRRGEYDERLAIELKVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRRDEVI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP +P Sbjct: 408 MDRRDEVIDHVADLYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPAEP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + +E+ D V L+++ ++LEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEVEPALQESYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTKITDFS 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Q G+ + + Sbjct: 527 PLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVQLQNGLDPIRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 EAIPLDDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIERKHGREEVSYPDAQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NGI +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRGTFKEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN F V Sbjct: 767 VSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTVD 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + I Y + AIKGVG I+EA + PF L DFC+RVD KKLN+R++E L+ AGA Sbjct: 827 EAFNIVYGIGAIKGVGEGPVESILEARVNGPFTDLFDFCARVDLKKLNKRIIEKLICAGA 886 Query: 891 LDCFGYSRMQLLQSLDN-IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 LD G R ++ +L I AQ + +H+ +K + Sbjct: 887 LDSLGPHRASMMATLPQAISAAAQHAKAEAIGQHDMFGLLNSEPEDNKQQFVECMPWPDK 946 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + E E+ LG Y +GHP++ Y L++ ++ T RG + A +VV+ + T Sbjct: 947 IWLEGERDTLGLYLTGHPINQYLKELKQYTSGRLKDVHPTERGKTAKAAGLVVATRVMLT 1006 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 ++G+++G VT + + E F Sbjct: 1007 KRGAKMGLVTLDDKSARLEVMLF 1029 >gi|307246021|ref|ZP_07528103.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255002|ref|ZP_07536820.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259438|ref|ZP_07541163.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852956|gb|EFM85179.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861875|gb|EFM93851.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866374|gb|EFM98237.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 1158 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1059 (40%), Positives = 623/1059 (58%), Gaps = 72/1059 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A +G++PI Sbjct: 6 FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65 Query: 71 IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IG + + D +D ++T LL GY + L+S+ Y QG Sbjct: 66 IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109 Query: 127 QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + +WL E+ EG+I+L+GG +G + +A + A++ + +++ F + Y+ Sbjct: 110 VEFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168 Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 169 LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ LP F + Sbjct: 229 RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDLS-- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV Sbjct: 287 ---TEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 344 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLIP Sbjct: 404 DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 464 PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR + Sbjct: 523 DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ Sbjct: 583 VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642 Query: 656 DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++ +V N +RK+G E++ S+ P++DP T GVI+YQEQVMQIAQ+L+G Sbjct: 643 ESGMVQNFIDRKHGHEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKS Sbjct: 699 YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 759 HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818 Query: 825 CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR Sbjct: 819 KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+++L++ K +++H + A + +T Sbjct: 879 EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930 Query: 943 FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 V+N+ E E+ LG Y SGHP+ + L E T RG Sbjct: 931 EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +A +++ + T++GSR+G T + + + + F Sbjct: 991 VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|190150430|ref|YP_001968955.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915561|gb|ACE61813.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 1201 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1055 (40%), Positives = 621/1055 (58%), Gaps = 64/1055 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A +G++PI Sbjct: 49 FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 108 Query: 71 IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IG + + D +D ++T LL GY + L+S+ Y QG Sbjct: 109 IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 152 Query: 127 QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + +WL E+ EG+I+L+GG +G + +A + A++ + +++ F + Y+ Sbjct: 153 VEFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENQAEADELVGFYQQYFPNHYYLA 211 Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 212 LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 271 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ LP F + Sbjct: 272 RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDLS-- 329 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV Sbjct: 330 ---TEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 386 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 387 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 446 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLIP Sbjct: 447 DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 506 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 507 PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 565 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR + Sbjct: 566 DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 625 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ Sbjct: 626 VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 685 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 ++ +V N +RK+G E++ H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 686 ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLG 745 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 746 GADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAA 805 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ F Sbjct: 806 YALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHRF 865 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR E L+ Sbjct: 866 SVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLI 925 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+++L++ K +++H + A + +T V+ Sbjct: 926 MSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETPEEVQ 977 Query: 947 NSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 N+ E E+ LG Y SGHP+ + L E T RG + + Sbjct: 978 NAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTV 1037 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +++ + T++GSR+G T + + + + F Sbjct: 1038 AGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1072 >gi|156975491|ref|YP_001446398.1| DNA polymerase III subunit alpha [Vibrio harveyi ATCC BAA-1116] gi|156527085|gb|ABU72171.1| hypothetical protein VIBHAR_03222 [Vibrio harveyi ATCC BAA-1116] Length = 1143 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1039 (40%), Positives = 617/1039 (59%), Gaps = 53/1039 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + ++ K+A PA+A+TD NL +++ A +G++PIIG D MQ Sbjct: 1 MVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVKPIIGA--DFKMQS 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + G+ + + LL + EGY+ L L+S+ YL + + +WL E+ + Sbjct: 59 D----EFGEE----LTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVLDKAWLAEL-S 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-V 200 EGLI+L+G +G I +A + +V + + + + F DR Y+ L R D Sbjct: 110 EGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVRTGRPDEETYLHFA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 ++LA ELP+VATN +F+SE+ ++AH++ +A+ + RP+ +P+ YL+ E Sbjct: 170 IELAEELELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLRTEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALEN+VEIA+RC+ +++ LP F + EE + L K+ GL Sbjct: 230 MCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGM-----EETDFLVMKSREGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + +Y RL EL+VI +M F GYFLIV +FIQW+K N IPVGP Sbjct: 285 EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLE-KAFKAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 E AD V L+++ + LEG R+A HA G+VI ++ P+Y D PVT Sbjct: 464 ALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L + R + V + IP DD ++ L Sbjct: 524 QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAASFRL 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 I S+ ++DP T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK Sbjct: 644 AISYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 699 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K Sbjct: 700 KPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 759 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSL 839 HYP EF+AA MT +MDN EK+ + + + ++PP +N F V +N I Y + Sbjct: 760 MHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYRFNVDENGAIVYGI 819 Query: 840 AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L++AGALD G R Sbjct: 820 GAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHR 879 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFSVENSSVRFE 953 L+ SL++ K A + ++F G +D + + V E Sbjct: 880 AALMASLNDAVKAASQHHQAEAFGQTDMF----GVLTDAPEEVEHKYTQVPAWPEKVWLE 935 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ + T++G+ Sbjct: 936 GERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGT 995 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 RIG +T + + E F Sbjct: 996 RIGIMTLDDRSGRMEVMLF 1014 >gi|229845787|ref|ZP_04465899.1| DNA polymerase III subunit alpha [Haemophilus influenzae 7P49H1] gi|229810791|gb|EEP46508.1| DNA polymerase III subunit alpha [Haemophilus influenzae 7P49H1] Length = 1159 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1057 (40%), Positives = 619/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K T G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSTLCGDEYF----DLTLLAKNNEGYKNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E EG+I+L+GG+ G I + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HREGVIILSGGTQGDIGKKLLKENVAEIESAVAFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R D R Q ++LA +H LPLVATN+ +FL +D+EAH++ +A+ + Sbjct: 168 LALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ EM +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+++++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVRKGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNKGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ + + K+ ++F T D Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHED-------- 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + T+KG+R+G T + + + F Sbjct: 994 TVAGLLVASRIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|126667580|ref|ZP_01738550.1| DNA polymerase III, alpha subunit [Marinobacter sp. ELB17] gi|126628006|gb|EAZ98633.1| DNA polymerase III, alpha subunit [Marinobacter sp. ELB17] Length = 1161 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1052 (40%), Positives = 630/1052 (59%), Gaps = 53/1052 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL++HS +SL++G + + ++ ++ PA+ +T+ +N+FS + F + A AG++P Sbjct: 5 TFVHLRIHSEHSLVDGLVRVKPLIKRVVELGMPAVGLTEQSNMFSLVRFYKAALGAGVKP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG L + D + ++PF T LL S +GY L E+VS Y Q Sbjct: 65 IIGADLWFENPD------EPESPFRTT----LLASNNDGYLNLTEIVSLGYTEGQRFGKP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I WL E ++GLIML+GG G + +A + ++A +R ++ L+ Y+ LQR Sbjct: 115 IIKREWL-EARSQGLIMLSGGKMGDVAKAMLSDKPKLARERACYWRDLYPGSFYLELQRT 173 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R D V LA LP+VATN+ F+ ED+EAH+ + + S + R R Sbjct: 174 GRAGDEDCLHLNVALAAELGLPVVATNDVHFIYAEDFEAHEARVCIGESRTLDDPRRDRR 233 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D +L++ EM+ +F+D+PEA+ENT+ IARRCS +++ LP + E + Sbjct: 234 FSDQQHLRSAEEMIELFADIPEAVENTLAIARRCSVTVRMGEYFLPNYPVPEGMTMN--- 290 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA+ + K Y + Q Y RL FEL++I +M F GYFLIV D Sbjct: 291 -DYFRRVSEEGLEDRLAK-TLPKDDPDYDSKRQAYYDRLKFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N +PVGPGRGSGAGS+ AYA ITD+DPL++ LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIKWAKNNGVPVGPGRGSGAGSLVAYAQLITDLDPLQYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV KYG E V+QIITFG++ AKA +RDV R Y D+L K+IP + Sbjct: 409 CMEGRDRVIAYVAEKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 ++ +A+ + +E D + E++ KLEG+ R+A HA G+VI ++ Sbjct: 469 VGMTLA-KAVEQEPSLKEFLAQDEEAQEIWEMAIKLEGVCRNAGKHAGGVVIAPTKITDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597 P+Y D VTQF+ +E AGL+KFDFLGL+TLT++ +L + +RG+K +D Sbjct: 528 SPLYCDDDGGSLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWALKMINPRREKRGLKPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +S IP DD ++ +L T +FQLES GM+ + +QPD +ED+IALV+L+RPGP+ + Sbjct: 588 ISEIPLDDPASFVMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + +RK+GK+ + HP + P+L+ T GVI+YQEQVMQIAQ++ GYSL A Sbjct: 648 GMVDDFIDRKHGKQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMGGYSLGNA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQK+ F+ G + N I K +A NIF+L+ KFA YGFNKSH+AAYA Sbjct: 708 DMLRRAMGKKKPEEMAKQKQFFLDGCAGNNIDKALAENIFDLVEKFAGYGFNKSHSAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HY EF+AA +T +M N +K+ ++ R + ++ P V+T F Sbjct: 768 LVSYQTLWLKAHYTAEFMAAVLTADMQNTDKVVTLVEECRSLKLDLVLPDVSTSEYAFTA 827 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ ++ Y L AIKG+G I+ A + PF L DFC RVD KK+N+R LE+++ A Sbjct: 828 NDDGQVVYGLGAIKGLGEGPIDSIVTARKENGPFTDLFDFCRRVDLKKVNKRALEAMIRA 887 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEK 942 GA+D G R QL+ S++ A +N ++F A + ++D + + Sbjct: 888 GAMDKLGAGRAQLMASIEKAILQAGQQSRNEAAGMVDMFGDMLETAADVDAYTDVADIRE 947 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAM 1000 + + R + E+ LG Y +GHP D Y+ +R+ S+A ++ N R+A + Sbjct: 948 WPEKK---RLKGEKDTLGLYLTGHPFDEYEREVRRF----VRSSIADLKPNKSPQRVAGL 1000 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 VV+++ KTR GS + ++T + + EA F Sbjct: 1001 VVAQRTMKTRTGSTMCFITLDDRSGRIEATLF 1032 >gi|89075405|ref|ZP_01161822.1| DNA polymerase III subunit alpha [Photobacterium sp. SKA34] gi|89048821|gb|EAR54391.1| DNA polymerase III subunit alpha [Photobacterium sp. SKA34] Length = 1159 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1056 (39%), Positives = 624/1056 (59%), Gaps = 61/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G + I+ K + PA+A+TD NL ++F A AGI+ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKVKPIVKKASELGMPALAMTDFTNLCGLVKFYFAAHDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + G F + LL + EGY+ L L+S Y + Sbjct: 64 PIIGADFKV------QSAEMGDELF----ELTLLAANNEGYKNLTLLISEAYQRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL EGLI+L+GG +G + +A + ++ + + ++ F D Y+ L R Sbjct: 114 PVIDKEWLVN-HREGLIILSGGKNGDVGKALLKGNQKMVDSLVAFYQTHFPDSYYLELVR 172 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D ++LA +LP+VATN+ L+ + ++AH++ +A+ + +RP+ Sbjct: 173 TGRVDEEAYLHFAIELAEKADLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDPNRPK 232 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + YL++ EM +F+D+PEAL+N+VEIA+RC+ +++ LP F + Sbjct: 233 LYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + +Y +RLD EL V+ ++ F GYFLIV +F Sbjct: 288 IEDFLITKSREGLEERLEFLFPDPEVRAARRPEYDERLDIELKVVNQIGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC Sbjct: 348 IQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P +P Sbjct: 408 MDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + +A AD V L+++ + LEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFDAEPQLGQAYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R V+ +++ Sbjct: 527 PLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRLVEQGKDPINI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L + +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPMDDQKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +V N +RK+ +E + S+ ++DP T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 647 MVDNFIDRKHAREAVSYPDEKWQHESLKEILDP----TYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F G+ KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +KI + + ++++PP VN Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMKLKLLPPDVNKGLYR 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D + Y + A+KGVG +I+ A F L DFC+R+D+KK+N+RVLE L Sbjct: 823 FNVDEDGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + +GA+D G +R +L +LD+ K A ++H A + +T V Sbjct: 883 IKSGAMDRLGPNRAAMLATLDDAIKAA--------SQHHQAEAFGQADMFGVLTAAPEEV 934 Query: 946 EN---------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 EN V E E+ LG Y +GHP++ Y L+ +++ T R Sbjct: 935 ENKYANIPEAPDKVWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDAQQTGRDKVAT 994 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +V++ + T++G+RIG +T + + E F Sbjct: 995 VAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|54310069|ref|YP_131089.1| DNA polymerase III subunit alpha [Photobacterium profundum SS9] gi|46914508|emb|CAG21287.1| putative DNA polymerase III, alpha subunit [Photobacterium profundum SS9] Length = 1158 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1052 (39%), Positives = 629/1052 (59%), Gaps = 54/1052 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL +HS +S+++G ++ ++ K+A PA+A+TD NL ++F A AG++ Sbjct: 4 PRFIHLHIHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHGAGMK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + ++ + N+ + + +L + +GYQ L L+S+ YL + Sbjct: 64 PIIGADFKVHSEE---LENE-------LADLTILATDNDGYQNLTMLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + G +GLI+L+G G + +A + + + L +K F D Y+ L R Sbjct: 114 PVIDKEWLVQYG-KGLILLSG-RCGDVGKALLKGNQLLVNRCLEFYKTHFEDSFYLELVR 171 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D V+LA +LP+VATN+ FLS E ++AH++ +++ + +RP+ Sbjct: 172 TGRPDEDAYIHFAVELAANEDLPVVATNDVRFLSAEQFDAHEIRVSIHDGYTIVDPNRPK 231 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + +P YL+ EM +FSD+PEAL N+VEIA+RC+ +++ LP F + Sbjct: 232 LYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGDL-----S 286 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 287 TEDFLVVKSREGLERRLAYLFPDEAVRVEKRPEYDERLEIELKVINQMGFPGYFLIVMEF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLKFDLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDRL K+IP +P Sbjct: 407 MDKRDLVIDHVAEIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMIPAEP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + +A AD V L+++ + LEG+ R+A HA G+VI ++ Sbjct: 467 GMTLA-KAFEAEPQLGDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTITDFS 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + A+ +++ Sbjct: 526 PLYCDAEGANPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKEPINI 585 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L + +FQLES GM+ ++ +QPD ED+IALV+L+RPGP+ + Sbjct: 586 ASIPMDDKKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSG 645 Query: 659 VVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + +L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 646 MVDNFIDRKHGREEVSYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 705 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 706 MLRRAMGKKKPEEMAKQRTTFEQGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 765 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT ++K HYP EF+AA MT +MDN +KI + + I ++PP VN F V Sbjct: 766 VSYQTLYLKAHYPAEFMAAVMTADMDNTDKIIGLVDECLRMKIPLLPPDVNKGLYRFNVD 825 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I Y + A+KGVG +++EA F L DFC+R+D+KK+N+RVLE L+ +G Sbjct: 826 EQGAIVYGIGAVKGVGEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSG 885 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A+D G +R L+ +L++ K A +H + A + +T VE + Sbjct: 886 AMDRLGPNRATLMATLNDAIKAA--------GQHHHAEAFGQADMFGVLTAAPEEVEQAY 937 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + E E+ LG Y +GHP++ Y L+ +++ T R +A + Sbjct: 938 ANIPEWPDKIWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGL 997 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V++ + T++G+RIG +T + + E F Sbjct: 998 VIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1029 >gi|227357235|ref|ZP_03841592.1| DNA polymerase III, alpha chain [Proteus mirabilis ATCC 29906] gi|227162498|gb|EEI47487.1| DNA polymerase III, alpha chain [Proteus mirabilis ATCC 29906] Length = 1144 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1036 (40%), Positives = 611/1036 (58%), Gaps = 46/1036 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K+A+ PA AITD NL ++F A AGI+PI+G D+ ++ Sbjct: 1 MIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIVGA--DVYLET 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 L + +L GYQ L L+S Y G I WL Sbjct: 59 ELLGDEYAH--------LTILARDNVGYQNLTLLISEAYKHGYGAAGPVIKQEWLTTY-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGL++L+GG G + + + + E+ L ++ F D Y+ L R R + + Sbjct: 110 EGLLLLSGGRMGDVGKFLLRGNRALVEQCLEYYQTHFPDSYYLELIRTGRPDEESYLHEA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V LA LP+VATN+ FL +D++AH++ +A+ +S RP+ +P Y++ E Sbjct: 170 VALASEKGLPVVATNDVRFLDSDDFDAHEIRVAIHDGFTLSDPKRPKHYSPQQYMRTEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALEN+VEIA+RC+ +++ LP+F + E+ L K+ GL Sbjct: 230 MCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGDM-----STEDFLIKKSKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDPQEREKRRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD VI +V + Sbjct: 345 GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFAAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + R K VD+S I D ++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKSLEPVDISAISLTDQRSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + +V N +RK+G E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGVE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F +GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEAGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F + D C+R ++KKLNRRV+E L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKLNRRVMEKLIMSGAFDKLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-----SSVRFENEQR 957 SL++ K A K ++F G ++ + S N V E E+ Sbjct: 884 SSLEDALKAADQHAKAEAIGQSDMF----GVLAEAPEQVERSYANVPKWPDQVVLEGERE 939 Query: 958 VLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LG Y +GHP+ Y K I R ++ V T RG +++A +V++ + T++G+RIG Sbjct: 940 TLGLYLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMVKVAGLVLASKVFTTKRGNRIG 999 Query: 1017 WVTFSEPAKEYEANFF 1032 T + + E F Sbjct: 1000 ICTLDDRSGRLEIMLF 1015 >gi|149192145|ref|ZP_01870366.1| DNA polymerase III subunit alpha [Vibrio shilonii AK1] gi|148834015|gb|EDL51031.1| DNA polymerase III subunit alpha [Vibrio shilonii AK1] Length = 1159 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1050 (39%), Positives = 621/1050 (59%), Gaps = 49/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A ++G++ Sbjct: 4 PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGNAHSSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P+IG + Q + I +L + GY L L+S+ YL + Sbjct: 64 PLIGADFAV----------QSDEFGDELTRITVLAADNTGYNNLTLLISKAYLRGHIQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E+ +EGLI+L+G G + +A ++ +A++ ++ F DR Y+ L R Sbjct: 114 PVIDKAWLVEL-SEGLIVLSGAKEGDVGKALLKGNTTLAKQCAQFYQTHFPDRYYLELIR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + V+LA +LP+VATN +F+ +E ++AH++ +A+ + R Sbjct: 173 TGRPDE--ESYLHFAVELAEELDLPVVATNEVVFVDKELFDAHEIRVAIHDGYTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ + YL++ +M +F+D+PEAL+N+VEIA+RC+ +++ LP F + Sbjct: 231 PKKYSAQQYLRSEEDMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPAFPTEGM---- 286 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 +E + L K+ GLE RL + +Y RL EL+VI +M F GYFLIV Sbjct: 287 -KETDFLVMKSREGLEERLEFLFPDEAVRAERRPEYDDRLQIELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KLIP Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPA 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + D V L+++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLE-KAFKAEPALPQLYDGDEEVRDLIDMCRILEGCTRNAGKHAGGVVISPTTITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R + V Sbjct: 525 FAPIYADSEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIESIPLDDSASFQLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+G+E + H + L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 645 SGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAVFEEGAINNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N F Sbjct: 765 ALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLFRFN 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I Y + AIKGVG I+EA + F L DFC+R+D KK+N+RV+E L+ Sbjct: 825 VNEEGAIVYGIGAIKGVGEGPIDVIIEARNKGGHFRDLFDFCARIDIKKVNKRVIEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEK 942 +GALD G R ++ SL++ K A + ++F G +D + + Sbjct: 885 SGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQADMF----GVLTDAPEDVEHKYTQ 940 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V+ Sbjct: 941 VPPWPEKVWLEGERETLGLYLTGHPINAYLKELTKYTSCRLKDATPTRRDQSLTVAGLVI 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG +T + + E F Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|108762214|ref|YP_633981.1| DNA polymerase III subunit alpha [Myxococcus xanthus DK 1622] gi|108466094|gb|ABF91279.1| DNA polymerase III, alpha subunit [Myxococcus xanthus DK 1622] Length = 1185 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1055 (39%), Positives = 627/1055 (59%), Gaps = 51/1055 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL +H+ YSLL+GA+ + +++ + ++A+TD N+F A++F +KA AGI+P Sbjct: 2 SFTHLHLHTLYSLLDGAIRMKDLIKTVKEKGMSSVAVTDHGNMFGAIDFYKKAKDAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128 I+G + + + ++ ++L+ EGY L L S Y+ G Sbjct: 62 ILGMEAYVAGPKGREDRSE-----KVSHHLILVAKNEEGYANLRYLSSTAYM--HGFYYH 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L E ++GL LT G + A F A + +K +F ++ +Q Sbjct: 115 PRIDKKVLAE-HSKGLFALTACLGGEVTSACFRGDMDHARRAAQEYKDIFDPGHFFLEVQ 173 Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + ++ + ++ + QL+ ++PL AT ++ ++ ED AH++LM +A ++ R Sbjct: 174 SNGMPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLADGKRM 233 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + D Y+ + +EM+ F D+PEA+ NT IA +C+ L++ P+LP F K D Sbjct: 234 KHSTDKLYVTSPTEMLEFFKDIPEAVHNTQRIAEQCNLELKLGKPMLPTF--KVPD--SH 289 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ + A GL R + A Y + Y+ RL E+ VI +M F GYFLIV DF Sbjct: 290 TPDSYMAELAYEGLRERFTELAATVTYPIDREQYQARLALEIGVIQKMGFCGYFLIVQDF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAKK NIPVGPGRGSGAGS+ AYAL ITD+DP+ ++LLFERFLNP+R+SMPDFDIDFC Sbjct: 350 INWAKKMNIPVGPGRGSGAGSLVAYALRITDVDPIPYNLLFERFLNPERVSMPDFDIDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRRDEVI+YV KYG V QIITFGSL+AK+ LRDV R +P+S+ DR+ KL+P Sbjct: 410 QDRRDEVIQYVGRKYGEMNVGQIITFGSLKAKSVLRDVCRVFALPFSEGDRIAKLVPE-- 467 Query: 484 AHPVSL-QAIADDSRFREARLADPS-----------VDRLLEISQKLEGLYRHASTHAAG 531 ++L +AI + R +E + PS +LEI+ LEGL+R HAAG Sbjct: 468 VLNITLREAIEMEPRLKEM-METPSNIGEVEGKPVTTRDVLEIALALEGLHRQPGMHAAG 526 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI D+PL + VP+Y+ +TQF +E AGL+KFDFLGLKTLT++Q +LD + + Sbjct: 527 VVIADKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQHALDLVKR 586 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 G + IP +D +T+ L+ T GIFQ+ESSG + + ++P+C ED+IA +LY Sbjct: 587 NHGKDIPRHEIPLNDEKTWELMAKGDTAGIFQMESSGFTEMVVKLKPNCFEDVIAAGALY 646 Query: 651 RPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+D+ + V+ NRK+G+EK+ HP ++P+LK+T GVI+YQEQVMQI+Q+L GY+L Sbjct: 647 RPGPLDSGMVDVFINRKHGREKVSYPHPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLG 706 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK E M ++ F+ G +KN + +A IF+L+ KFA+YGFNKSH+AA Sbjct: 707 RADLLRRAMGKKKAEVMQAERAGFLEGCAKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAA 766 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y +++ TAW+K HYP EF+AA ++ E DN +K+ K +AR+ ++++PP VN ++F Sbjct: 767 YGLVTIHTAWLKAHYPCEFMAALLSSEKDNTDKVVKHIGEARESGLEVLPPDVNQSDMEF 826 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +I + L AIKGVG I+EA D F SL DFC RVDS+K+NR+V+E+LV A Sbjct: 827 GAVSGKIRFGLGAIKGVGEGAIESILEARKDGSFKSLFDFCERVDSRKVNRKVMEALVKA 886 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD----KITLEKFS 944 G+ D SR Q+ +++ +K++ ++F G SD + + Sbjct: 887 GSFDFEKRSRRQIFDTIEKAMNRGSASQKDKAAGQSSLFGMLAGPSSDGGGGGLKDDYVE 946 Query: 945 VENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----RGNNIRLA 998 VE+ S R E+ +GFY SGHPL Y L++ Y + + + + + +A Sbjct: 947 VEDWSEKERLSLEKEAIGFYVSGHPLHQYDKELKR-----YARPITAVQRARKDDKLTVA 1001 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V +++ T+ G R+ WVT + + E FP Sbjct: 1002 GIVTVLRERPTKTGKRMAWVTIEDLSGSIELVCFP 1036 >gi|167856189|ref|ZP_02478926.1| DNA polymerase III subunit alpha [Haemophilus parasuis 29755] gi|167852678|gb|EDS23955.1| DNA polymerase III subunit alpha [Haemophilus parasuis 29755] Length = 1158 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1056 (40%), Positives = 614/1056 (58%), Gaps = 62/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S++ G + ++ A+ A+A+TD N + F +A +G++ Sbjct: 4 PRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGSGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPT---VPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 PI+G + + P P + + LL GY + L+S+ Y QG Sbjct: 64 PIVGADVMV-------------RPEPESEELYELTLLAKNNTGYHNITLLLSKAY--QQG 108 Query: 126 KQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + +WL E +G+I+L+GG +G + +A + Q AE+ L +++ F + Y+ Sbjct: 109 YVEFPVVEKAWLAE-HNDGVILLSGGRNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYL 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +L R R + + Q V + +PLVA N+ +FL ++D+EAH++ +A+ S + Sbjct: 168 SLCRTGRSDEEHYIQQAVTFSQKFAIPLVAVNDVMFLKQDDFEAHEIRVAIHDSFTLDDP 227 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP + + Y ++ EM +F+DLP+A+ENT+ IA+RC+ +++ LP F E Sbjct: 228 KRPQKYSEQQYFRSEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGEYFLPNFPTGELS- 286 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + Y +RL EL+VI +M F GYFLI Sbjct: 287 ----TEDFLVKKAKEGLEERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLI Sbjct: 403 VDFCMDGRDRVIEHVSETYGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP ++ +A + + E D V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTLA-KAFEAEPKLPELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR K Sbjct: 522 TDFSPLYFDSYGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKP 581 Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD + + LL T +FQLES GM+ + +QP EDIIALV+L+RPGP Sbjct: 582 LVRIESIPLDDEKAFKLLKAAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGP 641 Query: 655 IDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V N +RK+GKE I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 642 LESGMVQNFIDRKHGKEPIAYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+ F GA K GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT EMDN +KI F + + ++PP +N+ Sbjct: 762 AYALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDINSGKHR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKGVG ++EA + D F L D +RVD +K+NRR E L Sbjct: 822 FSVNEKGEIVYGLGAIKGVGEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGA D G R L+++L++ + +++H + A + +T V Sbjct: 882 IMAGAFDKLGPHRAALMKNLEDALR--------ASDQHNKMEALGQSDMFGVLTETPEEV 933 Query: 946 ENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 +N+ +NE+ LG Y SGHP+ + L E T RG Sbjct: 934 QNAYANTPKWTEQTILDNEKATLGLYLSGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTT 993 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +++ + T+KGSRIG T + + + + F Sbjct: 994 VAGLIMGARIATTKKGSRIGIATIEDRSGKMDLTLF 1029 >gi|294140019|ref|YP_003555997.1| DNA polymerase III subunit alpha [Shewanella violacea DSS12] gi|293326488|dbj|BAJ01219.1| DNA polymerase III, alpha subunit [Shewanella violacea DSS12] Length = 1157 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1043 (40%), Positives = 607/1043 (58%), Gaps = 36/1043 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSFVHL+VHS YS+ +G + IL K+ PA+A+TD NL ++F AG++ Sbjct: 4 PSFVHLRVHSDYSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHGAGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + K + S+ ++ +GY L L+S YL Sbjct: 64 PIIGADFWVRVPGFDK----------DLCSVTVIAMDNDGYLNLTLLISDAYLRGHINDR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + + GL++L+GG G + RA + + + ++ F DR Y+ L R Sbjct: 114 AVIDQEWLIKY-SNGLLLLSGGRHGDVGRALLKGNKPQVDSLVEFYQTHFPDRYYLELLR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN +F S E ++AH++ +A++ ++ RP+ Sbjct: 173 TGRPDEETYLHLAVELAQEKGLPVVATNQVVFNSPEFFDAHEIRVAISDGFTLADPRRPK 232 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC---DDI 303 D Y K+ EM ++F D+PEA+ NTVEIA+RCS +++ LP F E D + Sbjct: 233 KYSDQQYFKSSEEMCALFEDIPEAIANTVEIAKRCSVTVRLGEYFLPNFPTGELSIEDFL 292 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 K E+ L N+ LE + + Y +RLD EL VI +M F GYFLIV +F Sbjct: 293 VKVSEDGLENR----LEFLFPDPEV-RAQKRPAYDERLDIELKVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW K +IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 348 IQWGKDQDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K++P +P Sbjct: 408 MDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + +E+ D V L+++ + LEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEVEPALQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + A V + Sbjct: 527 PIYCDSEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKALGKEPVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD +++ LL T +FQLES GM+ ++ +QPD ED+IALV+L+RPGP+ + Sbjct: 587 ESIPLDDKKSFKLLQRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N RK+G+E++ H + +L+ T G+I+YQEQVMQIAQ+L+GYSL AD Sbjct: 647 MVDNFIERKHGREEVSFPDAEYQHESLKWVLEPTYGIILYQEQVMQIAQVLAGYSLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NGI +++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+AA M+ +MDN +KI + + ++PP VN + F V Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLKFNVD 826 Query: 832 -DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + +I Y + AIKGVG I+ A D PF L DFC+RVD KKLN+R++E L+ AGA Sbjct: 827 EEGKIVYGIGAIKGVGDGPVESILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGA 886 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSS 949 LD G R ++ +L + A K ++F D K + + Sbjct: 887 LDSLGPHRAAMMATLPAAVRAADQNAKAEAIGQHDMFGLLNSDTEDIKQQFVQCTPWPDK 946 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +V++ + T Sbjct: 947 IWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATRVMMT 1006 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 ++GS++G VT + + E F Sbjct: 1007 KRGSKMGLVTLDDKSARLEVMLF 1029 >gi|163857430|ref|YP_001631728.1| DNA polymerase III subunit alpha [Bordetella petrii DSM 12804] gi|163261158|emb|CAP43460.1| DNA polymerase III, alpha subunit [Bordetella petrii] Length = 1163 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1008 (41%), Positives = 612/1008 (60%), Gaps = 56/1008 (5%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + +P+FVHL+VHS +S+++G + + +++ ++A QPA+A+TD +N+F ++F + Sbjct: 1 MSEAVNPTPAFVHLRVHSEFSVVDGIVRIPDLIKRVAQLGQPAVALTDLSNIFGLIKFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AG++PI GC + + D+ + PF ++LLV +GY L EL++R + Sbjct: 61 GARGAGVKPIAGCDVWLTNDDD------PEKPF----RLLLLVRNHQGYLNLCELLTRSF 110 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L +QG+ I WLQ G +GLI+L+GG +G I A ++ A + LF Sbjct: 111 LENQGRGRAEIRREWLQ--GRQGLIVLSGGRAGDIGHALDAGNAVTALALARQWGALFPG 168 Query: 181 RLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Y+ LQR G + Y ++ ++LA LP+VAT+ FL +Y+AH+ + +A Sbjct: 169 AFYIELQRAGADGDEAYTQA-AMRLAAEAGLPVVATHPVQFLDASEYQAHEARVCIAQGE 227 Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 +++ R R T D YL + EM F+D+P AL NTVEIA+RC+ L + P LP F Sbjct: 228 ILADPRRVRRFTKDQYLLSTEEMARRFADVPSALANTVEIAKRCNLTLVLGKPRLPNFPT 287 Query: 298 KE---CDD--IQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVI 348 + DD +Q EE GLE RL A AQ Y +RL +E I Sbjct: 288 PDGISLDDYLVQLSEE---------GLEKRLEFLFPDPAERDAKRAQ-YYERLRWECKTI 337 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F GYFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFL Sbjct: 338 IQMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFL 397 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MP Sbjct: 398 NPERVSMPDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMP 457 Query: 469 YSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 Y D L KLIP +PA P SL + + D+ F+E + V L+++++ LEGL R+ Sbjct: 458 YLFCDGLSKLIPFNPADPWSLDRTLKDEPAFKERYEQEEEVRALVDLARPLEGLTRNIGM 517 Query: 528 HAAGIVIGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA G++I L+ P+Y + + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ Sbjct: 518 HAGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAV 577 Query: 587 DFL---AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++ + D+ +P DD Y +L T +FQLES GM++ L+ ++P+ EDI Sbjct: 578 RYVRRFNESKRDFDIMALPLDDPAAYKVLCDANTTAVFQLESRGMKELLKKLRPNTFEDI 637 Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 IA+++LYRPGP+++ +V + NRK+G+ + HP ++ LK T GVI+YQEQVM I+Q+ Sbjct: 638 IAMLALYRPGPLESGMVDDFVNRKHGRATVDYFHPDLEATLKSTYGVIVYQEQVMLISQI 697 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 + GYSL AD+LRRAMGKK EEM K +E F GA + G +AV +F+L+ KFA YGF Sbjct: 698 IGGYSLGGADLLRRAMGKKKPEEMAKHRELFEKGAKEKGHDPNLAVKLFDLMEKFAGYGF 757 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSH+AAYA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ FC+DA+ + ++PP V Sbjct: 758 NKSHSAAYALIAYQTAWLKAYHPTEFLAATISSDMDDTDKVQVFCRDAQDNGVLVLPPDV 817 Query: 822 NT------PCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 N P D + R + Y L A+KG G I+ A AD PF +L DFC Sbjct: 818 NASGYRFEPVADEHTREGRPPRTMRYGLGAVKGTGQGAVEEILRAREADGPFANLFDFCR 877 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 RV+ +NRR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + Sbjct: 878 RVNKHAVNRRTIEALIKAGAFDTIEPNRAAMLASVGTAMEAAE--QAARSANQVSLFGDD 935 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 G L K + N + E+ LGFYFSGH D ++ +R++ Sbjct: 936 SGDVVAG-ELSKVAPWNLHTKLTEEKSALGFYFSGHLFDHWRDEVRRI 982 >gi|325528701|gb|EGD05777.1| DNA polymerase III subunit alpha [Burkholderia sp. TJI49] Length = 1118 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1028 (41%), Positives = 617/1028 (60%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNPDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL +EGL+ L+G G I A + + A + + K+F Y+ LQR Sbjct: 114 AELDPGWLDGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTDQYFRTQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLEKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 SQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+S+ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCIVNNLVVLPPDINQSHYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTIEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945 D +R QLL S+ + A E N E+ AH L Sbjct: 889 DSLNTNRAQLLASVPLAMEAADQAEANALQAGLFDMGAESPHAH---------ALVDEPA 939 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + R + E+ LGFY SGH D Y+ +R+ + V ++ G + +A ++ S Sbjct: 940 WDDKRRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKVGELKEGRDKLVAGIIASL 995 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 996 RTQMTQRG 1003 >gi|307250356|ref|ZP_07532305.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857631|gb|EFM89738.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 1158 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1055 (40%), Positives = 620/1055 (58%), Gaps = 64/1055 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A +G++PI Sbjct: 6 FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65 Query: 71 IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IG + + D +D ++T LL GY + L+S+ Y QG Sbjct: 66 IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109 Query: 127 QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + +WL E+ EG+I+L+GG +G + +A + A++ + +++ F + Y+ Sbjct: 110 VEFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168 Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 169 LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ +P Y ++ EM +F+DLP+A+ENTV+IA RC+ +++ LP F + Sbjct: 229 RPKKYSPQQYFRSEQEMCVLFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDLS-- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV Sbjct: 287 ---TEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 344 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLIP Sbjct: 404 DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 464 PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR + Sbjct: 523 DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ Sbjct: 583 VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 ++ +V N +RK+G E++ H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 643 ESGMVQNFIDRKHGHEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTLG 702 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 703 GADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAA 762 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ F Sbjct: 763 YALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHRF 822 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR E L+ Sbjct: 823 SVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+++L++ K +++H + A + +T V+ Sbjct: 883 MSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETPEEVQ 934 Query: 947 NSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 N+ E E+ LG Y SGHP+ + L E T RG + + Sbjct: 935 NAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTV 994 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +++ + T++GSR+G T + + + + F Sbjct: 995 AGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|56179800|gb|AAV82522.1| DNA polymerase III alpha subunit [Idiomarina loihiensis L2TR] Length = 1142 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1034 (40%), Positives = 611/1034 (59%), Gaps = 43/1034 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + I + +A PA+AITD N + + KA G++P+IGC + Sbjct: 1 MIDGLAKVGPICEAVAEAGMPALAITDQMNFCGLVRYYGKAHQLGLKPLIGCDFWV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q P + + L EGYQ++ +L+S+ YL K I WL+E Sbjct: 57 ------QADYPESEIFRLTALAMDNEGYQQITQLISKAYLRGNIKGKPVIDKDWLKE-HN 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQV 200 EG+I+L+G G + +A + L +++ F DR Y+ L R R + + Sbjct: 110 EGIILLSGSRQGDVGQALIKGHDSQLDAALDFYQQYFPDRYYLELVRTGRPQEENYLHKA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V LA LP+VATN +FL EED++AH++ +A+ + K RP+ +P YL++ E Sbjct: 170 VALAGETGLPVVATNEVVFLKEEDFDAHEIRVAIHDGYQLEDKRRPKKYSPQQYLRSSEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEA+ENTVEIA+RC+ +++ LP+F D+ EE L + GL Sbjct: 230 MSELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPKF---PTGDLTTEEF--LIKVSEEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL A + +Y +RL EL VI M F GYFLIV +FIQW+K N IPVGP Sbjct: 285 EERLEFLFPDAEEREQKRPEYDERLKRELGVINDMGFPGYFLIVMEFIQWSKDNGIPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC DRRDEVI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG E V+QIITFG++ AKAA+RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 LYGREAVSQIITFGTMAAKAAIRDVGRVLAHPYGFVDRISKLIPGDPGMTLA-KAFEIEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + A D V ++++++ LEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLGAAYDQDEEVKAIIDMARILEGVTRNAGKHAGGVVISPTKITDFSPLYCDDEGNNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++Q ++D + +R K +D++ I D + L Sbjct: 524 QFDKDDVESAGLVKFDFLGLRTLTIIQWAVDMVNRRHAKSGKDPIDITSIDLTDPACFKL 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM++ ++ + PD EDIIALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LKKAETTAVFQLESRGMKELIKKLLPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDAEYQHESLQPILEPTYGVILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+E F GA++N I +A IF+L+ KFA YGFNKSH+AAYA++SYQT WMKTH+P Sbjct: 704 MAKQREIFAKGAAQNNIDPELATKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHFP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA M+ +MDN +KI + + + ++PP VN F V + R+ Y + AIK Sbjct: 764 AEFMAAVMSADMDNTDKIVTLADECERMGLDLLPPDVNKGEYKFTVDEQQRVVYGIGAIK 823 Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I++A + PF L DFC RVD K++N+R+L+ L+ AGA+D G R L+ Sbjct: 824 GVGEAPIESIIKARQEGGPFRDLFDFCCRVDLKRMNKRILQRLIRAGAMDNLGPHRASLM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRV 958 +L+ + A+ ++F + + +++ K+S +V E E+ Sbjct: 884 ATLEKAIRQAEQHLNAEKIGQSDMFGVLTTEPEAVEQEFVSVRKWS---EAVWLEGERDT 940 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG Y +GHP++ ++ L+ T + +I +A +V+ + ++G R V Sbjct: 941 LGLYLTGHPINRFRAELKHYINSTLSNVTPTRKDESIAIAGLVIDVRVLTNKRGQRFAIV 1000 Query: 1019 TFSEPAKEYEANFF 1032 T + + F Sbjct: 1001 TLDDKTARMDVRLF 1014 >gi|188025561|ref|ZP_02959074.2| hypothetical protein PROSTU_00864 [Providencia stuartii ATCC 25827] gi|188023078|gb|EDU61118.1| hypothetical protein PROSTU_00864 [Providencia stuartii ATCC 25827] Length = 1144 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1035 (40%), Positives = 615/1035 (59%), Gaps = 44/1035 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K+AA PA AITD NL ++F A AGI+PIIG ++ + Sbjct: 1 MIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIIGADFFVESE- 59 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 ++ ++ + + +L EGYQ L L+S Y G I WL + Sbjct: 60 --QLGDE-------IAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + + + + ++ L ++ F Y+ L R R + Sbjct: 110 EGLILLSGGRQGDVGQFLLRGNQALVDECLAFYETHFPGCYYLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ +S RP+ +P YL++ E Sbjct: 170 VELATQRGLPVVATNDVRFIESSDFDAHEIRVAIHDGFTLSDPKRPKKYSPQQYLRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALEN+VEIA+RC+ +++ LP+F D++ E+ +R+K GL Sbjct: 230 MCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQF---PTGDMKTEDFLVMRSKE--GL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + +Y +RL+ ELNVI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLKFLFPDEKVRAERRPEYDERLEVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + R K VD++ IP DD +++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPVDIAAIPLDDQKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAIKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F + D C+RVD KK+NRRV+E L+ AGA D G R L+ Sbjct: 824 GVGEGPIEAIIEARQKGGIFKEIFDLCARVDLKKINRRVMEKLIMAGAFDHLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRV 958 SL++ K A K ++F + S ++ K+ V + E+ Sbjct: 884 SSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEQVESSYASVPKWP---DQVVLDGERET 940 Query: 959 LGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 LG Y +GHP+ Y I R ++ T RG + +V+S + T++G+RIG Sbjct: 941 LGLYLTGHPITRYLNEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGI 1000 Query: 1018 VTFSEPAKEYEANFF 1032 T + + + F Sbjct: 1001 CTLDDRSGRLDIMLF 1015 >gi|253996658|ref|YP_003048722.1| DNA polymerase III subunit alpha [Methylotenera mobilis JLW8] gi|253983337|gb|ACT48195.1| DNA polymerase III, alpha subunit [Methylotenera mobilis JLW8] Length = 1160 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/978 (43%), Positives = 614/978 (62%), Gaps = 29/978 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SPSFVHL+ HS YS+++G + +++ + + +D+ PA+A+TD +NLF A++F + A G+ Sbjct: 11 SPSFVHLRCHSEYSVVDGIVRIDDYVKQAVSDKMPALALTDLSNLFGAVKFYKAARGKGV 70 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC + ++ +N ++ ++ ++LL + GY L L+SR YL +Q + Sbjct: 71 KPIIGCDIWLENTENRELPSR----------LLLLCQSHTGYLTLCHLLSRAYLTNQYRG 120 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 +W E GTEGL++L+GG +G + +A + +A+K +++LF +R Y+ +Q Sbjct: 121 RAEFKRAWFAEAGTEGLLLLSGGLAGDVGQACAQGNVVLAKKLANEWQQLFPERFYLEVQ 180 Query: 188 R-----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 R + + V +A+ LP+VAT+ F S +DY AH+ +A V++ Sbjct: 181 RIATDAGKASEEMYIQHVRHIAHELSLPIVATHPIQFTSPDDYRAHEARTCIAEGYVLAD 240 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 K RP+ T + Y K ++++ ++F+D+PEAL N+VEIA+RC+ L + LP+F + Sbjct: 241 KRRPQNFTTEQYFKTQADIAALFADMPEALANSVEIAKRCNLSLTLGKNYLPQFPTPNNE 300 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + +E R LEV + + Y RLDFE NVI +M F+GYFLIVA Sbjct: 301 SLNDYLISEARLGLAKRLEVLFPNEEV-RASKQDVYAARLDFETNVINQMGFAGYFLIVA 359 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK N +PVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPDR+SMPDFDID Sbjct: 360 DFINWAKNNGVPVGPGRGSGAGSVVAYSLGITDLDPLEYNLLFERFLNPDRVSMPDFDID 419 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P++ VD + KLIP Sbjct: 420 FCQEGRDRVIDYVKQKYGIDAVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPL 479 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +S A+ + + E R + V LLE++ +LEGL R+ HA G++I ++ Sbjct: 480 ELGITLS-DALEKEPQLAERRENEEEVKELLELALRLEGLVRNIGMHAGGVLISPSKIAD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL--- 598 P+Y V+Q++ +E GL+KFDFLGL+TLT+L +L+ ++ + +L Sbjct: 539 FSPVYCQPDGASLVSQYDKDDVEAVGLVKFDFLGLRTLTILDMALENANKQRAERELPPL 598 Query: 599 --SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 +P DD T+ LL T T +FQLES GM+ L+ PDC EDIIALV+LYRPGP+D Sbjct: 599 FFETLPIDDKPTFQLLKTANTTAVFQLESRGMKDMLKQAMPDCFEDIIALVALYRPGPMD 658 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I Y RK+GK+++ HPL +P+LKET G+ +YQEQVMQIAQ+++GYSL AD+LRRA Sbjct: 659 LIPDYCRRKHGKQRVEYPHPLTEPILKETYGIAVYQEQVMQIAQVVAGYSLGGADLLRRA 718 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK KEEMD Q++ F GA+KN +++ A ++F+LL KFA YGFNKSHAAAYA+++Y T Sbjct: 719 MGKKKKEEMDAQRKIFTEGATKNNMTEQQASDLFDLLEKFAGYGFNKSHAAAYALVAYHT 778 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835 A++KTHYP FLAA+M+ +M+N + + F D ++++PP VN FK V N+I Sbjct: 779 AYLKTHYPAAFLAATMSADMNNTDSVHIFYDDCAPNQVEVLPPDVNESEFKFKPVSKNQI 838 Query: 836 YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y L A+KG G+ I++A A D PF SL DFCSR+D +K+NRRV+ESL+ AGA D Sbjct: 839 LYGLGAVKGTGSAAIDVILQARAKDGPFTSLFDFCSRLDLRKVNRRVIESLIRAGAFDKL 898 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R LL + E+ N ++N E S + L + R + Sbjct: 899 EPNRHALLAG---VALAISAAEQTNANSNQNSLFGEASDQSVHV-LPNVTPWPEQQRLQE 954 Query: 955 EQRVLGFYFSGHPLDVYK 972 E+ LGFYFSGHP Y+ Sbjct: 955 EKIALGFYFSGHPYWSYQ 972 >gi|325295328|ref|YP_004281842.1| DNA polymerase III, alpha subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065776|gb|ADY73783.1| DNA polymerase III, alpha subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 1147 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1022 (40%), Positives = 624/1022 (61%), Gaps = 27/1022 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +HS YSLL+GA+ + +++ K A+A+TD N++++ E ++ A GI+PI Sbjct: 7 FVHLHLHSQYSLLDGAIKIKDLVKKAKEYGMSAVAVTDHGNMYASYELYKECTAEGIKPI 66 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + I K N+G+ +VLL G + L++L S + L+ Sbjct: 67 IGQEFYIAKGSRFDRKKGNEGEK---GSYHLVLLAKNEIGLKNLMKL-SSIAFLEGFYYK 122 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI L+ G I + + A+ +K+LFGD Y+ +Q Sbjct: 123 PRIDKEVLEKY-SEGLIALSACIQGEIPVLYLQGKEEEAKNVAKWYKELFGDDFYLEIQY 181 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + +Q +++L+ ++ LVATN++ +L +ED+EAHDVL+ + +S ++R R Sbjct: 182 HGIKEQEKANQFLIKLSKELDIDLVATNDAHYLEKEDWEAHDVLLCLQTGKKLSDENRLR 241 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y K+ +EM+ +F ++P A+ NT+++A + ++ +LP++ D+ + Sbjct: 242 FSTKEFYFKDANEMLELFKEVPHAVFNTLKVAEKIDVKIKNTGYLLPKY------DVPPD 295 Query: 307 E--ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E+ LR A GLE R + I G Q Y QRL EL +I+ M F GYFLIV DFI Sbjct: 296 YTYESYLRELAEKGLERRFKELGITNGEIKQKYYQRLQHELKIISDMGFPGYFLIVWDFI 355 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAKKN IPVGPGRGS AGS+ AYA+ ITDIDPLRF+LLFERFLNP+R++MPD D+D CQ Sbjct: 356 NWAKKNGIPVGPGRGSAAGSLVAYAIGITDIDPLRFNLLFERFLNPERVTMPDIDVDICQ 415 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + RD VI+YV++KYG ++V QIITFG+++ K +RDVGR L +P +VD+ KLIPND A Sbjct: 416 EGRDRVIQYVRDKYGEDKVCQIITFGTMKTKMVVRDVGRVLGIPPKEVDKFAKLIPND-A 474 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + AI +E + ++ +LL+I+ KL+GL R HAAG+VI L++ +P Sbjct: 475 KSIE-DAIDRAPEIKELAQENETISKLLKIASKLQGLARQTGVHAAGVVIAPDTLTKYIP 533 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603 + + D+ TQ++M IE GL+K DFLGLKTLT++ K++ + +R G+++D IP Sbjct: 534 LAKSKDGDI-TTQYDMGQIESLGLLKMDFLGLKTLTIIDKTIKLIKERHGIEIDTRKIPL 592 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 DD +T+ LL T+G+FQLES GMR + ++P EDIIALV+LYRPGP+++ + Y Sbjct: 593 DDEKTFKLLQEGNTVGVFQLESQGMRNLMRRLKPSVFEDIIALVALYRPGPLNSGMAESY 652 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+G E + I P ++P LKET G+ IYQEQ+MQIA +L+GYSL EAD+LRRAMGKK Sbjct: 653 IRRKHGLEPVDYIFPELEPYLKETYGLFIYQEQIMQIANVLAGYSLGEADILRRAMGKKK 712 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K+ M++Q+ FI+ A + G + +F+ +AKFA+YGFNKSH+AAY ++Y TA++K Sbjct: 713 KDVMEEQRNIFITRAVERGYPREKVEKLFDDIAKFAEYGFNKSHSAAYGFLAYVTAYLKA 772 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP E + ++++ D ++I K +D R+ I + PP VN F + I + LA Sbjct: 773 HYPKELMTTMLSIDYDKTDEIVKLIKDCRENGIPVFPPDVNKSDALFSIEGKGIRFGLAG 832 Query: 842 IKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IKGVG A+HI++ + F L DFC RVD K++N++V+ESL+ AGA D G SR Sbjct: 833 IKGVGEKAAQHIVKIRKENGEFKDLYDFCERVDLKQVNKKVIESLIKAGAFDSTGISRAA 892 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L+ LDN AQ ++K ++ N+F +E + + K ++ E E++ +G Sbjct: 893 NLEVLDNAMSVAQSLQKTKSKGLMNLFDNETKIVNKEFP--KVREWPDRIKLEYERQAIG 950 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY SGHPL YK I++ E + G ++LA + K+T++G V Sbjct: 951 FYLSGHPLLEYKDIVQ-FSFDLTSEKDSWKDGQEVKLAGAITEVTTKRTQRGDLWATVEI 1009 Query: 1021 SE 1022 S+ Sbjct: 1010 SD 1011 >gi|319787804|ref|YP_004147279.1| DNA polymerase III subunit alpha [Pseudoxanthomonas suwonensis 11-1] gi|317466316|gb|ADV28048.1| DNA polymerase III, alpha subunit [Pseudoxanthomonas suwonensis 11-1] Length = 1191 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1009 (41%), Positives = 607/1009 (60%), Gaps = 60/1009 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLN--------------NILDKIAADQQPAIAITDTNNLFSA 55 FVHL VH+ YSL + + + N+L + PA+A+TD NNLF+ Sbjct: 3 GFVHLHVHTEYSLADSIIRVPEKPDQADPAKAKRPNLLSRAVELGLPALAVTDLNNLFAL 62 Query: 56 LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 ++F + A GI+P+ G L I ++ G+ P+ + LV GY L L Sbjct: 63 IKFYKACEAVGIKPVAGADLMI-------ASSPGEAPW----RMTALVRDHGGYLNLSRL 111 Query: 116 VSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 ++R ++ ++ V + W++E G+ GLI+L G S R N +A++ L + Sbjct: 112 LTRAWMEGHRQEGGVAVRPEWVRECGS-GLILLAGRES-LAGRLASENRHDLAQQHLADW 169 Query: 175 KKLFGDRLYVNLQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 ++ F L + L R R G + + S + A +P+VA+N+ FL ++AH+ + Sbjct: 170 QRDFDGNLCLELTRTRRDGEEAF-NSFALHAAAERGIPVVASNDVRFLDRAGFDAHEARV 228 Query: 233 AVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 +A V+ RPR +P+ YLK+ EM ++F+D+P+A+ NTVE+ARRC+ L + Sbjct: 229 CIASGRVLDDPKRPRDYSPEQYLKSPEEMAALFADIPDAISNTVELARRCNLELTLGKYA 288 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 LP + + + ++ +R ++ AG+E RLA+ +A G +DY RLDFEL+ I +M Sbjct: 289 LPDYPVPSDETL----DSWIRKESYAGIEERLAKNPLAPGKTREDYFARLDFELDTIIKM 344 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+ Sbjct: 345 GFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPE 404 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L PY Sbjct: 405 RVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDTGRVLGFPYGF 464 Query: 472 VDRLCKLIPNDPAHPVSLQ---AIADDSRFREARL-----ADPSVDRLLEISQKLEGLYR 523 VD + KL+PN ++L+ DS A L ++ V L++++++LE L R Sbjct: 465 VDGVAKLVPN--ILGITLKDAMGEGKDSEMASAELIQRYGSEDDVRDLIDLARQLEDLTR 522 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PL P++ + D PVTQF+ +E+ GL+KFDFLGL+TL Sbjct: 523 NAGKHAGGVVIAPTPLHTFCPLFAEHDHDGLGRNPVTQFDKNDVEEVGLVKFDFLGLRTL 582 Query: 580 TLLQKSLDFLAQR----GVK-VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQALE 633 T++ ++ + +R G+ +D++ +P DD TY + G G +FQ ESSGMR+ L+ Sbjct: 583 TIIDWAVKAINRRHERAGIPPLDIAALPLDDAATYKDIFASGNTGAVFQFESSGMRRLLK 642 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +L +T G+++YQE Sbjct: 643 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILADTYGIMVYQE 702 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ GYSL AD+LRRAMGKKI EM K +E F GA++ G+ + A IF+L+ Sbjct: 703 QVMQMAQIVGGYSLGGADLLRRAMGKKIPAEMAKHREMFREGAARGGVDEKKADEIFDLM 762 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+M+ +MDN +K+ F +AR Sbjct: 763 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATMSSDMDNTDKVVGFLVEARNLG 822 Query: 814 IQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871 + I+PP+VN +P + V + I Y L AIKGVG I+ E A + L DFC R Sbjct: 823 LAILPPTVNDSPYMFEAVTADTIRYGLGAIKGVGRGLCEAIVAEREAGGDYRDLLDFCRR 882 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 VDS KLNRR LE++V AGALD G +R L+ L + K + K ++F Sbjct: 883 VDSTKLNRRALEAMVNAGALDALGRNRATLMLQLPEVLKATDQMAKEAAAGQTSLFGMPS 942 Query: 932 GTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKM 978 + L+ +R + E+ LG Y SGHP D Y+ +R + Sbjct: 943 ADAGPSMQLDLPECAEWPLRQVLDGERETLGHYLSGHPFDPYREDVRGL 991 >gi|307257156|ref|ZP_07538928.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864318|gb|EFM96229.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 1158 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1059 (39%), Positives = 622/1059 (58%), Gaps = 72/1059 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A +G++PI Sbjct: 6 FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65 Query: 71 IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IG + + D +D ++T LL GY + L+S+ Y QG Sbjct: 66 IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109 Query: 127 QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + +WL E+ EG+I+L+G +G + +A + A++ + +++ F + Y+ Sbjct: 110 VEFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168 Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 169 LCRTSRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ LP F + Sbjct: 229 RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDL--- 285 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV Sbjct: 286 --STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 344 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLIP Sbjct: 404 DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 464 PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR + Sbjct: 523 DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ Sbjct: 583 VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642 Query: 656 DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++ +V N +RK+G E++ S+ P++DP T GVI+YQEQVMQIAQ+L+G Sbjct: 643 ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKS Sbjct: 699 YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 759 HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818 Query: 825 CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR Sbjct: 819 KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+++L++ K +++H + A + +T Sbjct: 879 EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930 Query: 943 FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 V+N+ E E+ LG Y SGHP+ + L E T RG Sbjct: 931 EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +A +++ + T++GSR+G T + + + + F Sbjct: 991 VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|206602357|gb|EDZ38838.1| DNA polymerase III, alpha subunit [Leptospirillum sp. Group II '5-way CG'] Length = 1201 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1048 (40%), Positives = 619/1048 (59%), Gaps = 27/1048 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VH+ YSLL+GA ++ ++ K A+ PAIA+TD NLF A+EF Q A Sbjct: 1 MSSTDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN---------QGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 G++PIIGC++ I + ++ QG+ ++LL GY+ L+++ Sbjct: 61 HGVKPIIGCEVYITPRSRFDRSDLYFGGDGPHQGRKINNASFHLILLAENDTGYRNLLKI 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 VS +L + RI L L EGLI L+G G I + A F+ Sbjct: 121 VSLSHL-EGFYYRPRIDLELLSRY-HEGLIALSGCLKGQISYMLTRGDTDRAYATAGLFR 178 Query: 176 KLFGDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FG Y + G + R +++ L+ +PLVATN+ +L ED HD+L+ Sbjct: 179 EIFGPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLC 238 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + + R R D YLK EM+ F +LPEA+ENT+ IA R + + + Sbjct: 239 LQTGKTLEDPARLRFGSDEFYLKTPREMIRSFEELPEAIENTLRIAERIDVSIDLQTTHM 298 Query: 293 PRFIEKECDDIQKEEEN--EL-RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 P + D+IQ + EL + GL+ R + A + Y +RL+ E+ VI Sbjct: 299 PSY---RLDEIQGQTTTVPELFVRTSREGLDARFLENAFSDAEKTL-YLERLEREIQVIQ 354 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M + GYFLIV DFI+ A++ IPVGPGRGS AGSV A++L IT+IDP+RF LLFERFLN Sbjct: 355 KMGYEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLFERFLN 414 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+S+PD D+DFC +RR EVI+YV ++YG +RVA I TFG++ AK ++RDVGR L M Y Sbjct: 415 PERVSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRVLGMTY 474 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 ++VDR+ K+IPN + +A+ ++ R DP ++ L +S+KLEG+ RH+S HA Sbjct: 475 AEVDRVAKMIPNSLDMTLE-KALEENPDLRSLLEKDPRMEELFSLSRKLEGITRHSSIHA 533 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI PL + VP+ + ++ VTQF +EK GL+KFDFLGL TLTL+ + + + Sbjct: 534 AGVVISREPLLEHVPLMKGANGEI-VTQFTKDDVEKVGLVKFDFLGLTTLTLIHGAENRI 592 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 IP DD TY LL+ TLGIFQLES GM + MQP+ ED+IAL++L Sbjct: 593 RAHTPDFSADRIPLDDPRTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLIALLAL 652 Query: 650 YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 YRPGPI++ +V + RK +I P ++P+L+ET GVI+YQEQVMQIA +L+G+SL Sbjct: 653 YRPGPINSGMVDDFIKRKKNPREIRYELPELEPVLRETYGVIVYQEQVMQIANVLAGFSL 712 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 EAD+LRRAMGKK EEM K +++F+ GA + G K A ++FEL+A FA YGFNKSH+A Sbjct: 713 GEADLLRRAMGKKKPEEMAKMQDKFVEGAVRKGFPKEKATHVFELMAYFAGYGFNKSHSA 772 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA+ISYQTA++KTHYP+E AA +T +D+ EKI F A+ I+++ P +N D Sbjct: 773 AYALISYQTAYLKTHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDINQSEFD 832 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885 F + +RI + L A+K VG I+EA A D PF DF R+ KK+NRRV+E+L Sbjct: 833 FAILPGSRILFGLGAVKNVGKQAVDCILEARAQDGPFTDFPDFLKRIVGKKVNRRVIEAL 892 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGA G R ++SLD++ +A+ + + + +++F+ ++G S L + Sbjct: 893 IRAGAFRSLGIRRAVAMESLDDLLAWAEKQKSGKGSMQKSLFSEDQGGRSFGPPLREVPE 952 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + + E+ LGFY + HP+ Y +L K+ + A G +R+ A+V + + Sbjct: 953 WDERMLLREEKNALGFYLTSHPMARYADLLLKLDTRSTRSLEAISEGETVRVFAVVSALR 1012 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + KT+KG ++ +T + EA FP Sbjct: 1013 EVKTKKGDKMAQLTLLDMEGTIEAVLFP 1040 >gi|322514110|ref|ZP_08067180.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae ATCC 25976] gi|322120040|gb|EFX92016.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae ATCC 25976] Length = 1158 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1055 (39%), Positives = 622/1055 (58%), Gaps = 64/1055 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A +G++PI Sbjct: 6 FVHLKVHSDFSMINGLAKVKPLVKTAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65 Query: 71 IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IG + + D +D ++T LL GY + L+S+ Y QG Sbjct: 66 IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109 Query: 127 QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + +WL E+ EG+I+L+GG +G + +A + A++ + +++ F + Y++ Sbjct: 110 VEFPVVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELISFYQQYFPNHYYLS 168 Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 169 LCRTGRMDEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ +P + ++ EM ++F+DLP+A+ENT++IA RC+ +++ LP F + Sbjct: 229 RPKKYSPQQHFRSEQEMCTLFADLPQAVENTLQIAMRCNVTVRLGEYFLPNFPTGDLS-- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV Sbjct: 287 ---TEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 344 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLIP Sbjct: 404 DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 464 PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR + Sbjct: 523 DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ Sbjct: 583 VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 ++ +V N +RK+G E++ H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 643 ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILAPTYGVIVYQEQVMQIAQVLAGYTLG 702 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 703 GADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSAA 762 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ F Sbjct: 763 YALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHRF 822 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V + I Y L AIKGVG I+EA D F L +RVD KK+NRR ESL+ Sbjct: 823 SVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFYLTARVDLKKINRRTFESLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D G R L+++L++ K +++H + A + +T V+ Sbjct: 883 MSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETPEEVQ 934 Query: 947 NSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 N+ E E+ LG Y SGHP+ + L E T RG + + Sbjct: 935 NAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTV 994 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +++ + T++GSR+G T + + + + F Sbjct: 995 AGIIMGSRIAITKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|116748665|ref|YP_845352.1| DNA polymerase III subunit alpha [Syntrophobacter fumaroxidans MPOB] gi|116697729|gb|ABK16917.1| DNA polymerase III, alpha subunit [Syntrophobacter fumaroxidans MPOB] Length = 1164 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1032 (40%), Positives = 619/1032 (59%), Gaps = 30/1032 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL VH+ YSLL+GA+ L ++++ + + PA+ +TD N+F ALEF +KA AAGI+P Sbjct: 3 AFVHLHVHTQYSLLDGAIRLTDLIETARSMEMPAVTMTDHGNMFGALEFYEKAKAAGIRP 62 Query: 70 IIGCQLDIDMQD----NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 IIGC++ + + + + G +VLL A GYQ L++LVS YL + Sbjct: 63 IIGCEVYLAPRSRHDRHGRAEGSGTGEEDRNYHLVLLAKDATGYQNLMKLVSAGYL-EGF 121 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 RI L + EGLI L+ G + N A + + G D Y+ Sbjct: 122 YYKPRIDKEILLQ-HHEGLIGLSSCLKGEVATLLSRNQESAARDAAREYAGILGPDHFYL 180 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ + ++ + +++ + LPLVATN+ +L + D AH++L+ + V + Sbjct: 181 ELQANGMPEQAKVNERLIVMGKELGLPLVATNDCHYLRKSDARAHEILLCIQTGKTVLDE 240 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKE 299 R + D Y K+ EM F+ +PEALEN+V IA RC L++ H P+ P Sbjct: 241 KRMKFQTDQLYFKSPEEMAREFAHVPEALENSVAIAERCRLELKLGDYHFPVFPL----- 295 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIA-KGYHAQD---YRQRLDFELNVIARMKFSG 355 D + E++ A+ G RL + G+ QD Y +RL EL VI M F+ Sbjct: 296 --DEGESVEDKFEKTALEGFRRRLRELEKRRSGFSEQDRGEYEERLRSELAVIREMGFAA 353 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DFI +AK + IPVGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+R+SM Sbjct: 354 YFLIVGDFINYAKSHGIPVGPGRGSAAGSLVAYAMNITDLDPIEHGLIFERFLNPERISM 413 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DFC R+EV YV KYG RVAQI TFG++QA+A +RDVGRAL MPY++VDR+ Sbjct: 414 PDIDVDFCIRGREEVFNYVSEKYGKNRVAQITTFGTMQARAVIRDVGRALAMPYNEVDRI 473 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP+ + +A + R E + DP + L EI+ LEGL RHASTHAAG+V+ Sbjct: 474 AKLIPSSLGMTLE-KAFQAEPRLAEQQREDPQIRELFEIAFALEGLTRHASTHAAGVVMA 532 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594 DRP+ + +P+Y ++ VTQ+ MK++E+AGLIKFDFLGL+ LT++ ++ + + G+ Sbjct: 533 DRPIVEYMPLYLGQDGEV-VTQYPMKYVERAGLIKFDFLGLRNLTVIDDAVRLIRETHGL 591 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++D+ +P DD +TY LL+ T G+FQLESSGMR L ++P+ DI+ALV+LYRPGP Sbjct: 592 ELDMLALPLDDRDTYALLSRADTTGVFQLESSGMRNILARLKPENFADIVALVALYRPGP 651 Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 +++ +V Y K+G+ +I ++ P+L+ T GVI+YQEQVM+IA +++ Y+L EADV Sbjct: 652 LESGMVELYIQGKHGQIEITYDPEILRPILEPTYGVILYQEQVMKIASVMASYTLGEADV 711 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK E M Q+ RF+ G+ KNGI A +IF+L+ KFA YGFNKSH+AAYA++ Sbjct: 712 LRRAMGKKNAEAMRDQRARFVEGSRKNGIPLAKANHIFDLMEKFAGYGFNKSHSAAYALV 771 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTA++KTHY VEF+AA + + + +++ + + R+ I I+PP VN DF V Sbjct: 772 AYQTAYLKTHYLVEFMAALLNSFLSSSDQVVRLISECREKGIDILPPDVNASSRDFTVVG 831 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +I + L A+K VG I+ ++ PF S+ DFC RVD++++NRRVLE LV GA Sbjct: 832 GKIRFGLGAVKNVGEAAIEVILNTRVERGPFKSIHDFCLRVDTQRVNRRVLEQLVKCGAF 891 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSV 950 D R ++ +LD+ AQ V+++R + N+F K T + L + + Sbjct: 892 DSIHSCRAGVMAALDDALDKAQAVQRDRQSGQINMFDLLKPRTKAGASALPEVPEWDGRQ 951 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGHPLD Y + ++ + G + L M+ ++ T+ Sbjct: 952 TLQFEKEALGFYISGHPLDSYAAQISQLCTADTQAVKERKEGAEVILCGMISIVKELTTK 1011 Query: 1011 KGSRIGWVTFSE 1022 KG R+ ++ + Sbjct: 1012 KGDRMAFLAIED 1023 >gi|283850843|ref|ZP_06368129.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. FW1012B] gi|283573766|gb|EFC21740.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. FW1012B] Length = 1153 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1046 (41%), Positives = 618/1046 (59%), Gaps = 51/1046 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+GA+ + +++ A+ PA AITD NL AL F A AGI+PI Sbjct: 4 FVHLHCHTEYSLLDGAIRIGDLVKTAASFGSPAAAITDHGNLHGALIFYDYAKKAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + + P +VLL GY+ L++LV+ + + R Sbjct: 64 IGCEVYVTAA-----SRHDRDPRNPRYHLVLLAQNLAGYKNLLKLVTLGHT-EGMYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + G EGLI L+ G I++ A + LF DR Y +Q + Sbjct: 118 VDKELLGKYG-EGLIALSACLKGEINQRLLKEGKDQAVACAREYMALFPDRFYFEIQANG 176 Query: 191 GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 ++ + ++ L+ ++PLVATN+ +L ED EAHDVL+ + + V R R Sbjct: 177 IPEQQTVNDFLIDLSDDLKVPLVATNDCHYLRAEDAEAHDVLLCIQTAACVDDAKRMRFT 236 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKECDDIQK 305 T D Y ++ EM F+ +P+AL NT EIA R L+ H P+ K DD+ Sbjct: 237 TKDLYYRSPDEMAEAFAHVPQALANTCEIAERVDLSLKFGDYHFPVYKTPPGKSLDDV-- 294 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + + A GL RLA+ A+ + Y RL+ EL+VI +M F GYFLIV DFI Sbjct: 295 -----MADMARQGLRDRLAKMPDAE---PKKYWDRLELELDVIKQMGFPGYFLIVQDFIN 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK + IPVGPGRGS AGS+ AYAL IT++DPL + LLFERFLN +R+SMPD D+DFC+ Sbjct: 347 WAKDHGIPVGPGRGSAAGSLVAYALRITNLDPLPYDLLFERFLNIERVSMPDIDVDFCER 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVIRYV +YG VAQI TFG+++AK +RDVGRAL M + + DR+ KLIP++ Sbjct: 407 RRYEVIRYVTERYGENAVAQITTFGTMKAKGVVRDVGRALGMTFGETDRIAKLIPDE--- 463 Query: 486 PVSLQAIADDSRFREARL-----ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 L+ D + RE L DP V L++IS++LEGL RHASTHAAG+V+ D ++ Sbjct: 464 ---LKMTIDKALEREPELKVLMRTDPRVGHLIDISKRLEGLARHASTHAAGVVVSDTAMT 520 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLS 599 + VP+Y+ +++ VTQ++MK +EKAGL+KFDFLGLKT+T++ +L + GV DL Sbjct: 521 EYVPLYKG-KNNETVTQWDMKRVEKAGLVKFDFLGLKTMTVIDDALKIIEGMGVTPPDLD 579 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +PF D +TY L T GIFQ+ES GMR+ L ++P+C ED+IA+++LYRPGP+ + + Sbjct: 580 TLPFTDEKTYELFAKGDTDGIFQVESQGMRKYLRMLRPNCFEDLIAMLALYRPGPLGSGM 639 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V + RK+G++ + HP ++ LK T GVI+YQEQVM+IAQ+L+ +SL D+LRRAM Sbjct: 640 VEQFIRRKHGEDPVEYPHPRLEETLKPTYGVIVYQEQVMKIAQVLASFSLGAGDLLRRAM 699 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EEM KQ++ F+ G + NGI A IF+L+ KFA+YGFNKSH+AAYA+ISY TA Sbjct: 700 GKKNAEEMGKQRQFFVDGCAGNGIEAKKANEIFDLMEKFAEYGFNKSHSAAYALISYHTA 759 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYPV F+AA MT +M+N +K+ ++ R +I++ PP VN F V DN+I Y Sbjct: 760 YLKAHYPVAFMAALMTSDMENQDKLLQYIAACRDNDIELCPPDVNAGLPHFSVKDNKILY 819 Query: 838 SLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAA+K +G A + E A+ PF SL DF SRV+ +K+ +RV+E L+ GA D FG Sbjct: 820 GLAAVKNIGRDAVAEIVAEREANGPFTSLLDFTSRVNMRKVTKRVIEYLIKCGACDGFGC 879 Query: 897 SRMQLLQSLDNIQKYAQ--WVEKNRTNKHENIFAHEK-------GTFSDKITLEKFSVEN 947 SR L+ LD Q +KN EK G + TL ++ + Sbjct: 880 SRAGLVAGLDQAAALGQKRAADKNDGRLSLMTLMPEKPKPTVGLGLSCPEATLPEW-LHE 938 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 + FE E LGFY + HPL Y+ LR M + G +++A + VS ++ Sbjct: 939 EMMAFEKE--ALGFYLTSHPLLAYERDLRAMRTTTLAQCAGIEPGVEVKVACICVSTKEI 996 Query: 1008 KTRKGSRIGWVTFSEP-AKEYEANFF 1032 T+KG ++ + + E EA F Sbjct: 997 ITKKGQKMAFCKLEDHLGGEAEAVVF 1022 >gi|291326493|ref|ZP_06124738.2| DNA polymerase III, alpha subunit [Providencia rettgeri DSM 1131] gi|291314103|gb|EFE54556.1| DNA polymerase III, alpha subunit [Providencia rettgeri DSM 1131] Length = 1144 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1035 (40%), Positives = 615/1035 (59%), Gaps = 44/1035 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K+A+ PA AITD NL + F A AGI+PIIG ++ + Sbjct: 1 MIDGLAKTGPLVKKVASMGMPAFAITDFTNLCGLVRFYGAAHGAGIKPIIGADFYVESE- 59 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + ++ + + +L EGYQ L L+S Y G I WL + Sbjct: 60 --LLGDE-------ISHLTVLARNNEGYQNLTLLISEAYQKGYGAVGPTIKREWLAK-HK 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 +GLI+L+GG G + + + + ++ L ++ F D Y+ L R R + Sbjct: 110 DGLILLSGGRKGDVGQFLLRGNQSLVDECLAFYETHFPDSYYLELVRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ ++ RP+ +P YL++ E Sbjct: 170 VELATKKGLPVVATNDVCFIESSDFDAHEIRVAIHDGFTLADPKRPKNYSPQQYLRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALEN+VEIA+RC+ +++ LP+F D++ E+ +R+K GL Sbjct: 230 MCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQF---PTGDMKTEDFLVMRSKE--GL 284 Query: 320 EVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + A+ +Y +RLD ELNVI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLEFLFPDEKIRAERRPEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + R K VD++ IP D +++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPVDIAAIPLHDQKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F + D C+RVD KK+NRRV+E L+ AGA D G R L+ Sbjct: 824 GVGEGPIEAIVEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRV 958 SL++ K A K ++F + S ++ K+ V + E+ Sbjct: 884 SSLEDALKAADQHAKAEAIGQADMFGVLAEAPEQVESSYASVPKWP---EQVVLDGERET 940 Query: 959 LGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 LG Y +GHP+ Y I R ++ T RG + +V+S + T++G+RIG Sbjct: 941 LGLYLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGI 1000 Query: 1018 VTFSEPAKEYEANFF 1032 T + + + F Sbjct: 1001 CTLDDRSGRLDIMLF 1015 >gi|218778784|ref|YP_002430102.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans AK-01] gi|218760168|gb|ACL02634.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans AK-01] Length = 1168 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1039 (40%), Positives = 619/1039 (59%), Gaps = 36/1039 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA+ L+ ++++ A AITD +F LEF +KA + I+PI Sbjct: 4 FVHLHVHTQYSLLDGAIRLDALVNQCKEFGMDACAITDHGTMFGILEFYEKAKSKDIKPI 63 Query: 71 IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IGC+ + M+D M + +VLL +GY+ L R+ L Q K Sbjct: 64 IGCECYVARKSMEDKTPMDKDNR-------HLVLLAENNQGYENL----CRLATLAQRKG 112 Query: 128 ---SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI L+E ++GLI L+ G I ++AE+ L +K LFG D Y Sbjct: 113 FYYKPRIDKKALEE-HSKGLICLSACLHGEIPMYISDGQMKLAEESALYYKNLFGPDHFY 171 Query: 184 VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q + ++ +Q + +LA ++PLV TN+ +L +D +AH+VL+ + + + Sbjct: 172 LEIQNNGLPEQEEMNQKLAELAEKLDIPLVGTNDCHYLRAKDAKAHEVLLCIQTNKTIHD 231 Query: 243 KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +R + D YLK+ EM+ F P A +NTV+IA C+ + P+F +E Sbjct: 232 TNRFKFRTDQLYLKSPQEMIEYFKGFPGATDNTVKIAEMCNVEFDLSTFHFPQFPTEE-- 289 Query: 302 DIQKEEENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 K E L G R+ A A+ + Y +RL +EL VI M F GYFLIV Sbjct: 290 --GKTEAEILTQMTWDGFHKRMDAIKAVNPAVDEEKYLERLKYELGVIQDMGFPGYFLIV 347 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFIQW+K+N IPVGPGRGS AGS+ AYAL ITD+DPL L+FERFLNP R SMPD D+ Sbjct: 348 SDFIQWSKRNGIPVGPGRGSAAGSLVAYALEITDLDPLEHKLIFERFLNPGRKSMPDIDV 407 Query: 421 DFCQDRRDEVIRYVQNKYGH-ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 DFC R+ YV KYG + V+QI TFGS+ A+A +RDVGRA+ +P +VD + KLI Sbjct: 408 DFCILGRERTFNYVVEKYGGGDYVSQITTFGSMNARAVVRDVGRAMAIPLGEVDVIAKLI 467 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P P + +A+ + + E P + L+E++Q LEGL RHASTHAAG+VI D+PL Sbjct: 468 PEAPKMTLK-KAMEQEPKLLEIMKDKPEIAELIEVAQVLEGLSRHASTHAAGVVIADKPL 526 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598 + +P+Y + ++ VTQF+MK +EK GL+KFDFLGL+ LT++ ++ + +G DL Sbjct: 527 VEYLPLYEGKKGEV-VTQFDMKRVEKIGLVKFDFLGLRNLTVIDNAIKLIEGQGKTPPDL 585 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + D TY+LL+ T G+FQLESSGM+ L ++P+C ED++A+V+LYRPGP+++ Sbjct: 586 MHLDVTDKATYNLLSRGDTTGVFQLESSGMKDLLARLKPECFEDVVAVVALYRPGPLNSG 645 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +V + RK+G + P ++P+LK+T GVI+YQEQVMQIA L+ YS+SEAD LR+A Sbjct: 646 MVDDFVKRKHGDIPVTYALPELEPILKDTYGVIVYQEQVMQIAAALASYSMSEADDLRKA 705 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKKI E+M +Q+ RF+ G +N + A +F L+ KF +YGFNKSH+AAYA++S+QT Sbjct: 706 MGKKIAEKMAQQRIRFMDGCKENNVDLKKAEALFNLMEKFGEYGFNKSHSAAYALVSFQT 765 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++KTH+ VEF+A+ MT EMDN + + KF + R +I+++PP VNT V F V + +I Sbjct: 766 AYLKTHFQVEFMASLMTSEMDNTDNVLKFMSECRDHDIEVLPPDVNTSSVSFTVLEGKIV 825 Query: 837 YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y +AAIKGVG I+E A+ PF+++ D C RVD +++N+RVLESLV AGA D G Sbjct: 826 YGMAAIKGVGQGAVEAIVEERKANGPFENIFDLCERVDLRRVNKRVLESLVKAGAFDSTG 885 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFEN 954 R QL+ L++ + Q + K + + +F A E T + L + ++ Sbjct: 886 AKRSQLMAVLESAIDHGQRISKEKNDPQMGLFGAIEMPTITP--ALPDIEEWDDQLKLSY 943 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LGF+ +GHPL Y+ IL K + +R+ M++S + T+KG Sbjct: 944 EKEALGFFLTGHPLGKYEDILIKFANADTLTLPEMPDKSAVRVGGMILSTKNLVTKKGDP 1003 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++T + E FP Sbjct: 1004 MAFITLEDMKGSVEVVVFP 1022 >gi|220904502|ref|YP_002479814.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868801|gb|ACL49136.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 1160 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1041 (40%), Positives = 620/1041 (59%), Gaps = 32/1041 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+GA+ + ++ + PA AITD NLF A F Q GI PI Sbjct: 4 FVHLHCHTEYSLLDGAIRIKDLCARAKDFGMPACAITDHGNLFGAAYFYQGCKDFGINPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTV-PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 GC++ + K T+ +P ++LL GY L++LVS +L D Sbjct: 64 FGCEVYVCHDHTDKKTD---SPLARRRHHLILLAQNKTGYHNLVKLVSHGFL-DGFYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L++ +EGLI L+ +G I RA + +A K + ++ +R Y+ LQ + Sbjct: 120 RVDKGLLRKY-SEGLICLSACIAGEIPRAILADDMDLARKLTHEYADIYPNRFYLELQSN 178 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + + ++ LA T LPLVATN+ +L+ +D EAH+VL+ + T + R + Sbjct: 179 GLKEQEKANAGLIDLAETCNLPLVATNDCHYLNADDAEAHEVLLCIQTQTTMDDPKRMQF 238 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y K+ EM F +PEAL NT IA C+ L P + E + Sbjct: 239 GTHELYYKSIEEMEKSFGHVPEALANTARIAEACNVELDFGNHYFPVYQLPEGASM---- 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+E R A GLE RL + Q YR RL +EL VI M F YFLIV +FI WA Sbjct: 295 ESEFRRLAEEGLEKRLVNHPDRDQLNPQTYRDRLQYELRVILEMGFPSYFLIVQEFINWA 354 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N+IPVGPGRGS AGS+ A+AL IT++DP+ ++LLFERFLN +R+S+PD D+DFC+ RR Sbjct: 355 KNNDIPVGPGRGSAAGSLVAWALRITNLDPIPYNLLFERFLNSERVSLPDIDVDFCERRR 414 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +VI+++ YG VAQI TFG+++AK +RDVGRAL M +++ DR+ KL+P D + Sbjct: 415 GDVIKHMVETYGEGSVAQITTFGTMKAKGVVRDVGRALGMSFAETDRIAKLVPADLKMTI 474 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + + L D V LL+ +++LEGL RHASTHAAG+V+ D+P+ + +P+Y Sbjct: 475 K-KALESEPELEKLYLEDQQVKHLLDTARRLEGLARHASTHAAGLVVSDKPMKEYLPLYL 533 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 R +L VTQF+ EKAGL+KFDFLGLKT+TL+Q +LD ++ +G +L +P D Sbjct: 534 GKRGEL-VTQFDGPMTEKAGLVKFDFLGLKTMTLIQDTLDNISLQGQAPPNLDNLPLTDA 592 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664 ETY L T G+FQ+ESSGMRQ L ++P C ED+IA+++LYRPGP+ + +V + R Sbjct: 593 ETYELYARGETDGVFQVESSGMRQYLRMLRPTCFEDVIAMLALYRPGPLGSGMVDEFIKR 652 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ ++ H + L++T GVI+YQEQVMQIAQ+++ Y+L AD+LRRAMGKK E Sbjct: 653 KHGQVPVIYPHESLTDCLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKAEA 712 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M K++ F++GA KN IS+ A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY Sbjct: 713 MAKERVTFVAGAQKNNISEEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHYK 772 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEF+AA +T EM N +K+ K+ + +I ++ PSVN +F + ++ + L IK Sbjct: 773 VEFMAALLTSEMGNQDKLLKYVSCCKDMDIDVVQPSVNRSQREFTAHEGKVVFGLGGIKN 832 Query: 845 VGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG R I+EA ++ F SL D C RV+ +K+ +RVLESL+ GA DCFG +R +L Sbjct: 833 VGDEAIREIVEARQQEEEFASLFDLCCRVNLRKVTKRVLESLIKGGACDCFGVARAAMLA 892 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEK----------GTFSDKITLEKFSVENSSVRFE 953 SLD + AQ K++++ ++ A G + + + E+ + Sbjct: 893 SLDLVVARAQRKAKDKSSNQVSLLAMAPVAESAPQPGIGIDCAEAATPEMADED---KLR 949 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KG 1012 E+ LGF+ + HPL Y +R++G+ E++ G +R A +V S ++ T+ KG Sbjct: 950 AEKDALGFFLTSHPLQPYVREIRRLGLTTLEDARDMFPGAEVRCAVLVTSVREVITKSKG 1009 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 R+ + + E FFP Sbjct: 1010 ERMAFAAVEDLTGHAEVTFFP 1030 >gi|317052727|ref|YP_004113843.1| DNA polymerase III subunit alpha [Desulfurispirillum indicum S5] gi|316947811|gb|ADU67287.1| DNA polymerase III, alpha subunit [Desulfurispirillum indicum S5] Length = 1163 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1055 (40%), Positives = 632/1055 (59%), Gaps = 48/1055 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA+ + ++ K PA+A+TD N+F A++F ++ AGI+P Sbjct: 2 SFVHLHLHTMYSLLDGAIKIPELVKKAKEYGMPAVAMTDHGNMFGAVDFYKQCTKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + +++ + + +VLL GY+ LI +VS+ YL + Sbjct: 62 ILGCEVYVS-PGSMREKRNAEGVYEGAYHLVLLAENMTGYRNLIYMVSQGYL-EGFYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 RI L+E +EG+I L+ G + ++ A + L + ++FG+ ++ LQ Sbjct: 120 RIDKELLREC-SEGIIALSACLGGEVPNQLLAGDTEGARRSALEYLEIFGEGNFFLELQE 178 Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + G D R Q++ LA +P+VATN+ +L+ ED +AHD+L+ + + + R Sbjct: 179 N-GMDDQRAVNRQLIALAEETGIPMVATNDCHYLNREDAKAHDILLCIQTQSNFDDEKRF 237 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D Y K+ M F + +A+ NTV+IA RC+ L++ LP++ DI Sbjct: 238 RFDSDQLYFKSPETMHKDFGHIKDAIANTVKIAERCNVQLEMGKVYLPKY------DIPA 291 Query: 306 EE--ENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E E+ + + GL R AQ + Y Y +RL+ EL+VI M F GYFLIVAD Sbjct: 292 EHTLESYIGEVSRKGLLERFAQFDRLGLTYDRPAYEERLEIELDVINSMGFPGYFLIVAD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW K +IPVGPGRGS AGS+ AYAL ITDIDP+ ++LLFERFLNP+R+SMPD DIDF Sbjct: 352 FIQWGKDQDIPVGPGRGSAAGSLVAYALKITDIDPIPYNLLFERFLNPERVSMPDIDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV+ KYG + V QI+T+ SLQAK LRDV R + +PYS D+L KL+PN Sbjct: 412 CMNRRGEVIDYVRKKYGDQNVCQIVTYASLQAKGVLRDVCRVMGLPYSDGDKLSKLVPNK 471 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +AI+ + + +EA A P + LL+ S LEGL+R A HAAGIVI D P+ Sbjct: 472 LGITLD-EAISMEPKLKEAAAAMPHGENLLKYSLALEGLFRQAGMHAAGIVITDEPIYTY 530 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLS 599 P+ R + PV QF+ E GL+KFDFLGLKTLT++ ++ F+ Q K D+S Sbjct: 531 APLSRGPEGE-PVCQFDKDKAEDIGLVKFDFLGLKTLTVIDEACRFVQQTQKLPAKFDIS 589 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I DD TY LL + + GIFQLES GMR L ++P EDI+A+++LYRPGP+ + + Sbjct: 590 AIAMDDQPTYDLLCSGKSAGIFQLESGGMRSLLTKLKPSNFEDIVAVLALYRPGPLGSGM 649 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V + +RK G+ +I+ + P ++P+LK+T GVI+YQEQVMQIA+ + GYSL AD+LRRAM Sbjct: 650 VDDFVDRKQGRSEILYLFPELEPILKDTYGVIVYQEQVMQIARTIGGYSLGAADLLRRAM 709 Query: 718 GKKIKEEMDKQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 GKK +EEM KQKE F + GA G A +F+L+A FA YGFNKSH+AAYA Sbjct: 710 GKKKEEEMVKQKEIFLHGDGDKVPGAKAMGFDLKKAEQVFDLMAYFAGYGFNKSHSAAYA 769 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +++YQTA++K HYP E +AA ++ EMDN +K+ +F + + +++ PP +N F V Sbjct: 770 LVAYQTAYLKAHYPSELMAALLSCEMDNTDKVVQFINECKSMGLEVHPPHINLSGHSFTV 829 Query: 831 GDN--RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 ++ I + L AIK VG+ I+ E + PF SL DF RVD + +N+RV+E+L+ Sbjct: 830 DEDGRSIIFGLTAIKNVGSKAVEAILQERQENGPFTSLYDFTERVDLRSVNKRVVENLIK 889 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITL--EKFS 944 GA D +R QL+ +LD+ Q ++K+R ++F E + SD ++ E Sbjct: 890 CGAFDSVHANRRQLIGALDHAFSLGQTIQKDREAGQISLFEMEAQDDSSDDLSHHEEYPD 949 Query: 945 VE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----RGNNIRLA 998 VE N++ R E+ LGF+ SGHPL+ ++ +L +GY +A++ + +R+A Sbjct: 950 VEDWNTTTRVAFEKECLGFFVSGHPLEPFQSVL-----EGYTTPIASVLEAQKKGRVRIA 1004 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ S Q K T+ G ++ + + + E FP Sbjct: 1005 GVLSSLQPKTTKAGKKMAIIVVEDQTAKLEIPIFP 1039 >gi|88706741|ref|ZP_01104443.1| DNA polymerase III alpha subunit [Congregibacter litoralis KT71] gi|88699062|gb|EAQ96179.1| DNA polymerase III alpha subunit [Congregibacter litoralis KT71] Length = 1168 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1029 (41%), Positives = 610/1029 (59%), Gaps = 45/1029 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS YSL +G + + + + A PAIA+TD N + ++F + A AGI+PI Sbjct: 4 FVHLRVHSEYSLSDGLVRIKALAARTAELGMPAIAVTDVCNFYGLIKFHKAAVNAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G D+ + ++LK + P + LLV A GY L L+SR Y Q + R Sbjct: 64 FGA--DVWVTESLK--DDEAHP------LCLLVMNATGYLNLTRLLSRAYREGQTHEGPR 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + W+ E EGL+ L+ G++G + +A + VA +RL ++F R Y+ L R Sbjct: 114 VLWDWVAE-SAEGLLALSCGAAGEVGQALVNDKPAVARQRLERCLEIFPGRFYLELHRTG 172 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R D V LA + P+VATN+ F+ ++EAH+ + +A S V+ R R Sbjct: 173 RVGDEEHVHAAVALAEQYACPVVATNDVRFIDASEFEAHEARVCIAESRVLDDPRRQRRY 232 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + + YL++ EM +F D+PEALENTV IARRCS +++ LP + E + + Sbjct: 233 SEEQYLRSVEEMQELFEDIPEALENTVAIARRCSMEIELGRVCLPDYPVPEGMTM----D 288 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFI 364 R + GL+ RL I + +A+D YR RLDFEL+ I M F GYFLIV DFI Sbjct: 289 AYFRELSHRGLDERLKTLQIHQRENAEDLERDYRARLDFELDTIIDMGFPGYFLIVMDFI 348 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+ IPVGPGRGSGAGS+ AY L+ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC Sbjct: 349 RWAKERGIPVGPGRGSGAGSLVAYCLSITDLDPMEYELLFERFLNPERVSMPDFDVDFCM 408 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RRDEVI YV YG E V+QIITFG+L AKA +RDV R Y DRL K+IP + Sbjct: 409 ERRDEVIDYVAETYGREAVSQIITFGTLAAKAVVRDVARVQGKSYGLGDRLSKMIPFEVG 468 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ + ++ D + +++ +LEG+ R+ HA G+VI L+ Sbjct: 469 MTLE-KALEQEESLQQFLRDDSEAQEIWDMAVQLEGVTRNVGKHAGGVVIAPSELTDFSA 527 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLS 599 +Y D VTQF+ +E AGL+KFDFLGL+TLT++ + + + + +D++ Sbjct: 528 LYCDGEGAGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAQGMINEIRARNDEPPLDIN 587 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD ++ LL + T +FQLES GM++ + ++PDC EDIIALV+LYRPGP+ + + Sbjct: 588 QIPLDDPASFDLLRSAETTAVFQLESRGMKELIARLRPDCFEDIIALVALYRPGPLQSGM 647 Query: 660 VYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 V N +RK+G+EK+ H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD+ Sbjct: 648 VDNFIDRKHGREKVSYPDADYQHELLKPVLEPTYGIILYQEQVMQIAQILAGYTLGGADL 707 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM KQ+ F +GA+ G+ +A +F+L+ KFA YGFNKSH+AAYA++ Sbjct: 708 LRRAMGKKKPEEMAKQRSVFAAGAASKGVDADLATKLFDLVEKFAGYGFNKSHSAAYALV 767 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQTAW+K HYP F+AA M+ E+DN +KI F ++ R+ + + P VN F V + Sbjct: 768 SYQTAWLKAHYPAAFMAAVMSSELDNTDKIVVFIEECRRMGLTVRLPDVNEGRYMFTVSE 827 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I Y L AIKG+G ++E+ AD PF L DFC+R D +KLNR+ LE+LV +GA Sbjct: 828 AGEIVYGLGAIKGLGEGPVSGLLESREADGPFRDLFDFCARTDPRKLNRKALEALVRSGA 887 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKFS 944 D G R LL +D+ + A+ NR ++F + E+G +L Sbjct: 888 FDSLGTERWVLLAGIDDALRAAEQNAANRDAGMVDLFGETVEASQEQG--DPYGSLRHVR 945 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 R + E+ LG Y +GHP+D + LR+ + + RG N R+A +++S Sbjct: 946 PWTDRERLQGERDTLGLYVTGHPIDACEDELRRFAPQRLADLRTDSRG-NCRVAGLILSM 1004 Query: 1005 QQKKTRKGS 1013 + K+ +G+ Sbjct: 1005 RAMKSARGA 1013 >gi|165976527|ref|YP_001652120.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876628|gb|ABY69676.1| DNA polymerase III alpha subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 1158 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1059 (39%), Positives = 622/1059 (58%), Gaps = 72/1059 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A +G++PI Sbjct: 6 FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65 Query: 71 IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IG + + D +D ++T LL GY + L+S+ Y QG Sbjct: 66 IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109 Query: 127 QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + +WL E+ EG+I+L+G +G + +A + A++ + +++ F + Y+ Sbjct: 110 VEFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168 Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 169 LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ LP F + Sbjct: 229 RPKKYSPQQYFRSEQEMCALFADLPQAIENTVQIAMRCNVTVRLGEYFLPNFPTGDL--- 285 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV Sbjct: 286 --STEDFLVKKSREGLEERLEFLFPDPEERKNKRSIYDERLQVELDVINQMGFPGYFLIV 343 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 344 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLIP Sbjct: 404 DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 464 PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR + Sbjct: 523 DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ Sbjct: 583 VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642 Query: 656 DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++ +V N +RK+G E++ S+ P++DP T GVI+YQEQVMQIAQ+L+G Sbjct: 643 ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKS Sbjct: 699 YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 759 HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818 Query: 825 CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR Sbjct: 819 KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+++L++ K +++H + A + +T Sbjct: 879 EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930 Query: 943 FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 V+N+ E E+ LG Y SGHP+ + L E T RG Sbjct: 931 EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +A +++ + T++GSR+G T + + + + F Sbjct: 991 VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|303250150|ref|ZP_07336352.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252740|ref|ZP_07534631.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651213|gb|EFL81367.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859772|gb|EFM91794.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 1158 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1059 (39%), Positives = 622/1059 (58%), Gaps = 72/1059 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A +G++PI Sbjct: 6 FVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65 Query: 71 IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IG + + D +D ++T LL GY + L+S+ Y QG Sbjct: 66 IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109 Query: 127 QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + +WL E+ EG+I+L+G +G + +A + A++ + +++ F + Y+ Sbjct: 110 VEFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168 Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 169 LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ LP F + Sbjct: 229 RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDL--- 285 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV Sbjct: 286 --STEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 344 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLIP Sbjct: 404 DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 464 PDPGMTLA-KAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR + Sbjct: 523 DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ Sbjct: 583 VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642 Query: 656 DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++ +V N +RK+G E++ S+ P++DP T GVI+YQEQVMQIAQ+L+G Sbjct: 643 ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKS Sbjct: 699 YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 759 HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818 Query: 825 CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR Sbjct: 819 KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+++L++ K +++H + A + +T Sbjct: 879 EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930 Query: 943 FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 V+N+ E E+ LG Y SGHP+ + L E T RG Sbjct: 931 EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +A +++ + T++GSR+G T + + + + F Sbjct: 991 VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|326316817|ref|YP_004234489.1| DNA polymerase III subunit alpha [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373653|gb|ADX45922.1| DNA polymerase III, alpha subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1181 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1002 (40%), Positives = 592/1002 (59%), Gaps = 50/1002 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ + + D QPA+AITD +NLF A++F ++A G++P+ Sbjct: 2 FVHLRLHTEFSVVDGTTRIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVKPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ I+ + G P I+LL +GY L E+++R + + K Sbjct: 62 LGAEVSIEPE------TAGNPP----GRILLLAQGRQGYLNLCEMLARAWTRNVVKNVPL 111 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 WL+E+G + LI L+G +GP+ +AF A + L LF R Y+ LQR Sbjct: 112 CTWEWLEELGGD-LIALSGAQAGPVGQAFTRGDDAGAARVALRLAGLFPHRFYLELQRAG 170 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D + VQLA LP+VAT + FL+ +DYEAH+ + +A +++ R R Sbjct: 171 RPEDESQVVAAVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVRRF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ ++M ++F+D+P A+ NT+EIARRCS L + P LP F I + Sbjct: 231 TREQYFKSSAQMEALFADVPTAIANTLEIARRCSLTLVLGKPRLPDFPTPNGMPI----D 286 Query: 309 NELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R + GLE RL + + Y +RL+FELN I +M F GYFLIV DFIQ Sbjct: 287 EYFRYASFEGLEERLKHLFRNEAERDKQRPRYVERLEFELNTILKMGFPGYFLIVGDFIQ 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+N PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 347 WAKENGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQS 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483 RD VI YV++KYG V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 407 NRDRVIDYVKDKYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGM 466 Query: 484 ----AHPVSLQAIADDSRFR--------EARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 A+P ++ D + + E + V ++E++QKLEG+ R+ HA G Sbjct: 467 SYTLAYPPEVKKEGDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGG 526 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ + Sbjct: 527 VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMK 586 Query: 592 RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R + IP DD TY L + T +FQ ES GM+ L+ +P +ED+IAL + Sbjct: 587 RHKGQENFAFENIPLDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 646 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 647 LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 706 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM + +E F GA++ GI + A +F+L+ KFA YGFNKSHAAA Sbjct: 707 GADMLRRAMGKKKAEEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHAAA 766 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + + PP VN F Sbjct: 767 YSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMYRF 826 Query: 829 K-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKKL 877 + V D I Y L A+KG G I+ A + PF SL DFC+RVD +L Sbjct: 827 EPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGRGVGPRGDTKGPFASLFDFCARVDRTRL 886 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV--EKNRTNKHENIFAHEKGTFS 935 N+R LE+L+ AGA D +R L+ S+D +A + N+ + + G+ + Sbjct: 887 NKRTLEALIKAGAFDAIEMNRASLVASIDRAFDFANSLIANANQGGLFDMMGDDSHGSST 946 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 L + R E+ +GFY SGH D + +R+ Sbjct: 947 QDPALVEMLPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRR 988 >gi|167624880|ref|YP_001675174.1| DNA polymerase III subunit alpha [Shewanella halifaxensis HAW-EB4] gi|167354902|gb|ABZ77515.1| DNA polymerase III, alpha subunit [Shewanella halifaxensis HAW-EB4] Length = 1177 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1049 (39%), Positives = 606/1049 (57%), Gaps = 39/1049 (3%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 ++ P FVHL+VHS +S+ +G + I+ K+A PA+A+TD N+ ++F + Sbjct: 20 HIMSDPRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAVALTDQTNMCGLVKFYEACH 79 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++PIIG + K P F SI L +GY L L+S YL Sbjct: 80 GNGVKPIIGTDFWV------------KVPGFDEFCSITALAMDNKGYSNLTLLISDAYLR 127 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 I WL + EGLI+L+G G + RA + + + +K F DR Sbjct: 128 GNINDKAVIDQEWLVKY-NEGLIILSGAKDGDVGRALLKENQNQVDSLIDFYKSNFPDRY 186 Query: 183 YVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ L R D R + V LA +LP+VATN +F E ++AH++ +A+ ++ Sbjct: 187 YLELLRTGRPDEERYLHMAVALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIYDGFTLA 246 Query: 242 QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 RP+ D Y K+ EM +F D+PEA++NTVEIA+RC+ +++H LP F + Sbjct: 247 DPRRPKKYSDQQYFKSSEEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYFLPNFPTGDL 306 Query: 301 DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E+ L + + GLE RL + +Y +RLD EL VI +M F GYF Sbjct: 307 -----TIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGYF 361 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 362 LIVMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPD 421 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K Sbjct: 422 FDVDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 481 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP +P ++ +A + +E+ D V L+++ + LEG+ R+A HA G+VI Sbjct: 482 MIPAEPGMTLA-KAFEVEPGLQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPT 540 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + K Sbjct: 541 KITDFSPIYCDTEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKEKNG 600 Query: 596 ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 V + I D + + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RP Sbjct: 601 EEPVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP 660 Query: 653 GPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V N RK+G+E++ H + +L T G+I+YQEQVMQIAQ+L+GY Sbjct: 661 GPLQSGMVDNFIERKHGREEVSYPDAEYQHESLQELLSPTYGIILYQEQVMQIAQVLAGY 720 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH Sbjct: 721 TLGGADMLRRAMGKKKPEEMAKQRGTFEEGAIANGVDGPLSMKIFDLVEKFAGYGFNKSH 780 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++SYQT W+KTHYP +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 781 SAAYALVSYQTLWLKTHYPAQFMAAVMSADMDNTDKIVTLVDECERMGMPLIPPDVNKGL 840 Query: 826 VDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V ++ I Y + A+KGVG I++A + PF L DFC+R+D KKLNRRV+E Sbjct: 841 FRFTVDEDLNIVYGIGAVKGVGEGPVDSILKARENGPFKDLFDFCARIDLKKLNRRVIEK 900 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943 L+ AGALD G R ++ +L + A K ++F D K + Sbjct: 901 LICAGALDNLGPHRAAMIATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQRFVEC 960 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + V E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ Sbjct: 961 TPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTMKAAGLVVA 1020 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+++G VT + + E F Sbjct: 1021 TRVMMTKRGAKMGLVTLDDKSARLEVMLF 1049 >gi|329296121|ref|ZP_08253457.1| DNA polymerase III subunit alpha [Plautia stali symbiont] Length = 1125 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1023 (41%), Positives = 610/1023 (59%), Gaps = 60/1023 (5%) Query: 42 PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDID---MQDNLKMTNQGKTPFPTVPS 98 PAIAITD NL + F A +AGI+PI+G + M D L Sbjct: 2 PAIAITDYTNLCGLVRFYGSAHSAGIKPIVGADFQVASDLMGDELT-------------Q 48 Query: 99 IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158 + +L + GYQ L L+SR Y G I WL E+G LI+L+GG G + R+ Sbjct: 49 LTVLAANNTGYQNLTLLISRAYQRGYGIAGPIIDRDWLLELGEG-LILLSGGRRGDVGRS 107 Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNS 217 ++ + + L +++ F +R Y+ L R R + V+LA +P+VATN Sbjct: 108 LLRGNNALVAQCLSFYQQHFPNRYYLELTRTGRPDEEAYLHAAVELAIAESVPVVATNEV 167 Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVE 276 FL+EED++AH++ +A+ + RPR +P Y+++ EM +FSD+PEALEN+VE Sbjct: 168 CFLNEEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMRSEGEMCELFSDIPEALENSVE 227 Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYH 333 IA+RC+ +++ LP+F + E+ L K+ GLE RLA + Sbjct: 228 IAKRCNVTVRLGEYFLPQFPTGDM-----STEDFLVMKSREGLEERLAFLFPDEQVRAKR 282 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 +Y +RLD ELNVI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL IT Sbjct: 283 RPEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKIT 342 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 D+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V YG + V+QIITFG++ Sbjct: 343 DLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAEMYGRDAVSQIITFGTMA 402 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513 AKA +RDVGR L PY V+R+ KLIP DP + +A + + E AD V L++ Sbjct: 403 AKAVIRDVGRVLGHPYGFVERISKLIPPDPGMTLE-KAFQAEPQLPEIYEADEEVKALID 461 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 +++KLEG+ R+A HA G+VI ++ P+Y D PVTQF+ +E AGL+KFDF Sbjct: 462 MARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGQFPVTQFDKNDVEYAGLVKFDF 521 Query: 574 LGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 LGL+TLT++ +L + R K ++++ IP DD +++ +L T +FQLES GM Sbjct: 522 LGLRTLTIIDWALKMINPRREKQGLPPINIAAIPLDDKKSFDMLQRSETTAVFQLESRGM 581 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPM 681 + ++ ++PDC ED+IALV+L+RPGP+ + +V N +RK+G+E I H + P+ Sbjct: 582 KDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDIQWQHESLKPV 641 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EEM KQ+ F GA K GI Sbjct: 642 LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFQDGAEKMGI 701 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 + +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT ++DN EK Sbjct: 702 NGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADIDNTEK 761 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SAD 859 + + + ++++PP +N+ F V D+ I Y + AIKGVG I+EA + Sbjct: 762 VVGLVDECWRMGLKVLPPDINSGLYPFHVNDDGEIVYGIGAIKGVGEGPIEAILEARNQG 821 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 F L D C+R D+KK+NRRV+E L+ +GA D G R L+ +L N K A K Sbjct: 822 GYFKELFDLCARTDTKKINRRVMEKLIMSGAFDRLGPHRAALISALGNALKAADQHAKAE 881 Query: 920 TNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFENEQRVLGFYFSGHPLDV 970 ++F G ++ E VE S V+ + E+ LG Y +GHP++ Sbjct: 882 ATGQADMF----GVLAE----EPEQVEQSYAAITPWPEQVQLDGERETLGLYLTGHPINQ 933 Query: 971 Y-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 Y K I R +G ++ T RG A +V++ + T++G+RIG T + + E Sbjct: 934 YLKEIERYVGGMRLKDMHPTERGKVTVAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEV 993 Query: 1030 NFF 1032 F Sbjct: 994 MLF 996 >gi|120611898|ref|YP_971576.1| DNA polymerase III subunit alpha [Acidovorax citrulli AAC00-1] gi|120590362|gb|ABM33802.1| DNA polymerase III, alpha subunit [Acidovorax citrulli AAC00-1] Length = 1190 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1004 (40%), Positives = 591/1004 (58%), Gaps = 50/1004 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++H+ +S+++G ++ + + D QPA+AITD +NLF A++F ++A G++ Sbjct: 9 PMFVHLRLHTEFSVVDGTARIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVK 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P++G ++ I+ + G P I+LL +GY L E+++R + + K Sbjct: 69 PVLGAEVSIEPE------TAGGPP----GRILLLAQGRQGYLNLCEMLARAWTRNVVKNV 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 WLQE+G + LI L+G +GP+ +AF A + L +F R Y+ LQR Sbjct: 119 PLCTWEWLQELGGD-LIALSGAQAGPVGQAFTRGDEAGAARVALRLAGIFPHRFYLELQR 177 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246 R D + VQLA LP+VAT + FL+ +DYEAH+ + +A +++ R Sbjct: 178 AGRPEDESQVVAAVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVR 237 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R T + Y K+ ++M ++F+D+P A+ NT+EIA+RCS L + P LP F I Sbjct: 238 RFTREQYFKSSAQMEALFADVPTAIANTLEIAKRCSLTLVLGKPRLPDFPTPNGMPI--- 294 Query: 307 EENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E R + GLE RL + Y +RL+FEL I +M F GYFLIV DF Sbjct: 295 -EEYFRYASFEGLEERLKHLFPNEAEREKQRPRYVERLEFELGTILKMGFPGYFLIVGDF 353 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK+N PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFC Sbjct: 354 IQWAKQNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFC 413 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q RD VI YV++KYG V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 414 QSNRDRVIDYVKDKYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKP 473 Query: 484 ------AHPVSLQAIADDSRFR--------EARLADPSVDRLLEISQKLEGLYRHASTHA 529 A+P ++ D + + E + V ++E++QKLEG+ R+ HA Sbjct: 474 GMSYTLAYPPEVKKEGDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHA 533 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 G++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ Sbjct: 534 GGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFI 593 Query: 590 AQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 +R + IP DD TY L + T +FQ ES GM+ L+ +P +ED+IAL Sbjct: 594 MKRHKGQENFAFENIPLDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIAL 653 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 +LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYS Sbjct: 654 NALYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYS 713 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM + +E F GA++ GI + A +F+L+ KFA YGFNKSHA Sbjct: 714 LGGADMLRRAMGKKKAEEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHA 773 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAY++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + + PP VN Sbjct: 774 AAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMY 833 Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSK 875 F+ V D I Y L A+KG G I+ A + PF SL DFC+RVD Sbjct: 834 RFEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGRGVGPRGDTKGPFASLFDFCARVDRT 893 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV--EKNRTNKHENIFAHEKGT 933 +LN+R LE+L+ AGA D +R L+ S+D +A + N+ + + G+ Sbjct: 894 RLNKRTLEALIKAGAFDAIEMNRASLVASIDRAFDFANSLIANANQGGLFDMMGDDAHGS 953 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + L + R E+ +GFY SGH D + +R+ Sbjct: 954 STQDPALVEMLPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRR 997 >gi|226945926|ref|YP_002800999.1| DNA polymerase III subunit alpha [Azotobacter vinelandii DJ] gi|226720853|gb|ACO80024.1| DNA polymerase III alpha subunit [Azotobacter vinelandii DJ] Length = 1176 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1070 (40%), Positives = 627/1070 (58%), Gaps = 68/1070 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL+VH+ +SL++G + + ++ +A PA+A+TD +N+ S ++F + A A G+ Sbjct: 2 SVSFVHLRVHTEFSLVDGLVRVKPLIKAVAGAGMPAVAVTDQSNMCSLVKFYKAAMAGGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GK 126 +PI C DI + P + + LL A+GY+ L ELVSR + Q G Sbjct: 62 KPI--CGADIWLAS--------AEPDAPLSRLTLLAMDAKGYRNLTELVSRGWTEGQHGD 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 V I W++E EG+I L+G G I +A A L + +F +R Y+ + Sbjct: 112 GLVIIQRDWVKE-AAEGVIALSGAKEGEIGQALLNGHVDQAAALLEEWLAVFPERFYLEV 170 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR R D V+LA + PLVATN+ FL +ED+EAH+ + + + R Sbjct: 171 QRTGRVGDEEYLHAAVELADRYGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLGDPRR 230 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR D YLK +EM +FSDLPEALEN+VEIARRC+ +++ LP F I Sbjct: 231 PRNYSDQQYLKTPAEMWELFSDLPEALENSVEIARRCNIEVRLGKYFLPNFPVPAGMTI- 289 Query: 305 KEEENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 ++ LR A GLE RLA + + Y +RL+FELN I +M F GYFLI Sbjct: 290 ---DDYLRQVAYEGLEERLAVLWPQETTPDYADKREVYVERLEFELNTIIQMGFPGYFLI 346 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 347 VMDFIKWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERISMPDFD 406 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI YV + YG V+QIITFGS+ AKA +RDV R Y DRL K+I Sbjct: 407 VDFCMDGRDRVIDYVADTYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMI 466 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P + + +A + RE D + +++ KLEG+ R HA G+VI L Sbjct: 467 PFEVGMTLE-KAYEQEEMLREFLKNDEEAQEIWDMALKLEGITRGTGKHAGGVVIAPTKL 525 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK 595 + P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + +RG Sbjct: 526 TDFAPIACDADGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETIHREQRRRGET 585 Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 VD+ I DD TY LL T +FQLES GM++ ++ ++PD IED+IALV+L+RPG Sbjct: 586 ELVDIDRIALDDKATYALLQRAETTAVFQLESRGMKELIKKLKPDNIEDMIALVALFRPG 645 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+ Sbjct: 646 PLQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYT 705 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F+ G +KNGI +A NIF+L+ KFA YGFNKSH+ Sbjct: 706 LGGADMLRRAMGKKKPEEMAKQRGGFVEGCAKNGIDAELAGNIFDLVEKFAGYGFNKSHS 765 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAY ++SYQTAW+KT YP F+AA ++ +M N +K+ ++ R ++I+ P VN Sbjct: 766 AAYGLVSYQTAWLKTRYPAPFMAAVLSADMHNTDKVVTLIEECRSMKLRIVAPDVNNSEF 825 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I+E +A PF L DFC+RVD K++N+R LE+ Sbjct: 826 MFTVDDEGRIVYGLGAIKGVGEGPVEAIVECRAAGGPFTDLFDFCARVDLKRINKRTLEA 885 Query: 885 LVFAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ GALD G +R LL +++ + A+ ++ + H ++F Sbjct: 886 LIRGGALDRLGPYFADEPKAYQANIDRNRAVLLAAVEEAVQAAEQTARSADSGHLDLFGG 945 Query: 930 -----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 E +++ + S+++ R + E+ LG Y +GHP+D Y+ +R+ Sbjct: 946 LFAEPEADVYANHRNARELSLKD---RLKGEKDTLGLYLTGHPIDEYEGEVRRFA----R 998 Query: 985 ESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + +R +A ++V+ + K +KG ++G++T + + EA+ F Sbjct: 999 QRIVELRPARELQTIAGLIVNLRVMKNKKGDKMGFITLDDRSARIEASLF 1048 >gi|152979519|ref|YP_001345148.1| DNA polymerase III subunit alpha [Actinobacillus succinogenes 130Z] gi|150841242|gb|ABR75213.1| DNA polymerase III, alpha subunit [Actinobacillus succinogenes 130Z] Length = 1158 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1053 (40%), Positives = 620/1053 (58%), Gaps = 56/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+ HS +S+++G + ++ + A+ +TD N ++F +A +AGI+ Sbjct: 4 PRFVHLRTHSDFSMIDGIAKVKPLVKACVREDMVAMGLTDFTNFCGLVKFYGEALSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D+ + L G F + LL EGY+ + L+S+ Y +G Sbjct: 64 PIVGA--DVLVSSAL----CGDERF----ELTLLAKNNEGYKNITLLLSKAY--QRGYDD 111 Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + I WL E EGLI+L+GG G I + + AE L ++K F + Y++L Sbjct: 112 LPYIDRDWLIE-HKEGLIILSGGRRGDIGQKLLKDKFADAESALGFYQKFFPNHFYISLA 170 Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R YD R + + LA H +PLVATN+ +FL ED+EAH++ +A+ + RP Sbjct: 171 RVGHYDEERYIRAAMDLAKKHRIPLVATNDVVFLKTEDFEAHEIRVAIHDGYTLDDPKRP 230 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 ++ TP Y ++ EM +F+D+P ALENT+ IA+RC+ +++ LP+F E Sbjct: 231 QLYTPQQYFRSEQEMCELFADIPTALENTLLIAQRCNVTIRLGQYFLPQFPTGEL----- 285 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L +A GLE RL + + + Y +RL+ EL VI +M F GYFLIV + Sbjct: 286 STEDYLVKRAKDGLEERLEFLFPDPKVRSENRRKYDERLETELGVINQMGFPGYFLIVME 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 346 FIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI +V YG V+QIITFG++ AKA +RDVGR L Y VDR+ KL+P D Sbjct: 406 CMEGRDRVIDHVAETYGRSAVSQIITFGTMAAKAVIRDVGRVLGHAYGFVDRISKLVPPD 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A + + +EA +D V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 PGMTLA-KAFDMEPKLQEAYDSDEEVKELIDMARKLEGVTRNAGKHAGGVVISPTKITDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + R V+ V Sbjct: 525 SPLYCDSEGRHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARMVREGKPEVR 584 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 585 IESIPLDDPESFKLLLNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQS 644 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E++ H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L A Sbjct: 645 GMVDNFIDRKHGREEVSYPDAEYQHISLKPILESTYGVILYQEQVMQIAQVLAGYTLGGA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 705 DLLRRAMGKKKPEEMAKQRSVFEEGAVKNGIDGKLAMKIFDLVEKFAGYGFNKSHSAAYA 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K H+P EF+AA MT EMDN +KI + + +++ PP +NT F V Sbjct: 765 LVSYQTLWLKAHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINTGKHHFSV 824 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ I Y + AIKGVG +++A + F L D C+RVD K++NRR ESL+ + Sbjct: 825 NDHGEIVYGIGAIKGVGEGPIEALVKARNEGGIFKDLFDLCARVDLKQINRRTFESLIKS 884 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHE----KGTFSDKIT 939 GA D G R L ++L++ + + K+ ++F HE K + + T Sbjct: 885 GAFDKLGPHRAALAKNLEDALQSSNQFAKDEAIGQADMFGVLTAGHEEVERKYANTPRWT 944 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 ++ + E+ LG Y S HP+ Y L ++ V RG Sbjct: 945 EKQI--------LDGERETLGLYLSSHPISRYLKELSHYTPNRLKDLVPNQRGQMTTACG 996 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++VS + T+KGSR+G + + + + F Sbjct: 997 LIVSSRFAVTKKGSRLGIASLDDRSGRLDITLF 1029 >gi|89092103|ref|ZP_01165058.1| DNA polymerase III subunit alpha [Oceanospirillum sp. MED92] gi|89083838|gb|EAR63055.1| DNA polymerase III subunit alpha [Oceanospirillum sp. MED92] Length = 1163 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1055 (40%), Positives = 618/1055 (58%), Gaps = 55/1055 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+FVHL+VH+ +SL++G + + ++ + PA+ +TD N F ++F + A GI+ Sbjct: 4 PTFVHLRVHTEFSLVDGLVRVKELVAAAKKEGMPAVGMTDQTNFFGLVKFFKAATGNGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--K 126 PI G L ++ D G P+ I LLV A+GY L+EL+S+ Y Q Sbjct: 64 PICGSDLWVENTDE-----PGGEPY----RITLLVRNAQGYLNLMELISQAYAEGQNIIP 114 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + W+ E EGLI L+G G + RA Q E L + +F D Y+ + Sbjct: 115 DMALVKPEWV-EAKAEGLIALSGAKKGEVGRAILAEKGQAPEV-LQRWMGVFKDSFYLEV 172 Query: 187 QRHRGYDRYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 QR R + Q+V +LA PLVATN +F+ +D+EAH+V + + S + Sbjct: 173 QRT---GRVGDEQIVHGSVELAKQFGCPLVATNEVMFVKADDFEAHEVRVCINQSRTLED 229 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-- 299 RP+ + Y +++ EM ++FSD+P AL+N+VEIA+RC+ +++ LP++ E Sbjct: 230 PTRPKEYSEQQYFRSQREMEALFSDIPSALQNSVEIAKRCNIDIEIGTYYLPKYPIPEGM 289 Query: 300 -CDDIQKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 DD R + GLE RL + Q+Y RL+FEL++I +M F Sbjct: 290 LMDDF-------FRKVSFDGLEERLEILLDRDDPEYDAKRQEYIDRLEFELDIIIQMGFP 342 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIV DFI+W K+N +PVGPGRGSGAGS+ AYA ITD+DPL + LLFERFLNP+R+S Sbjct: 343 GYFLIVMDFIKWGKENGVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVS 402 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFC D RD+VI YV YG + V+QI+TFG++ AKA +RDV R P+ DR Sbjct: 403 MPDFDIDFCMDNRDKVIDYVARTYGRDAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADR 462 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 L KLIP +P + +A+ + E + +++++ KLEG+ R HA G+VI Sbjct: 463 LSKLIPFEPGITLK-KALDQEPMLCEFIESSEEAQEIMDMAYKLEGVTRGVGKHAGGVVI 521 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----- 589 L+ Y D + VTQF+ +E+AGL+KFDFLGL+TLT++ +L + Sbjct: 522 APTKLTDFAATYCDEEGNGLVTQFDKGDVEEAGLVKFDFLGLRTLTIIDWALQTVNRIRD 581 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 Q +D++LI +D +T+ LL T +FQLESSGM+ + + P EDI+ALV+L Sbjct: 582 KQGEEPLDIALIDLEDKKTFDLLQAAETTAVFQLESSGMKDLVRRLLPSRFEDIVALVAL 641 Query: 650 YRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLL 702 +RPGP+ + +V + NRK+G+ ++ HP + P+L+ T G+I+YQEQVMQIAQ++ Sbjct: 642 FRPGPLQSGMVDDFINRKHGRAEMAWPHPDYQLDSLQPVLEPTYGIILYQEQVMQIAQVM 701 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GY+L AD+LRRAMGKK EEM KQ+ F+ G+ +NGI + +A NIF+L+ KFA YGFN Sbjct: 702 AGYTLGGADMLRRAMGKKKPEEMAKQRVSFLDGSEQNGIDRDLAGNIFDLVEKFAGYGFN 761 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSH+AAYA++SYQTAW+K HYP F+AA M+ +M N +K+ F ++ R I P+VN Sbjct: 762 KSHSAAYALVSYQTAWLKAHYPAPFMAAVMSSDMQNTDKVVIFIEECRNMGIPPALPNVN 821 Query: 823 TPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880 T F V D I Y L AIKGVG I+EA A+ F+ L DFC RV +KKLN+R Sbjct: 822 TGEYMFTVNDEGVIVYGLGAIKGVGEGPIEAIVEARAEGGEFNDLFDFCERVGAKKLNKR 881 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 VLE+LV +GA+DC G R L +++ + K A KN ++F + SD+ T Sbjct: 882 VLEALVRSGAVDCLGAERAVLWEAIPDALKAADQAAKNSDAGMFDLFGEVEAE-SDRCTY 940 Query: 941 EKFSVENSSV---RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 E + S R E+ LG Y +GHP+D Y+ L+ + E + RG ++ Sbjct: 941 EDYRNVRSWTDKERLAGEKDTLGLYLTGHPIDEYEAELKHFISRRIVE-LQPARGQTQKM 999 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +VV + KKT+KG + +VT + + + F Sbjct: 1000 AGLVVDLRLKKTKKGDNLCFVTLDDRSARIDVTLF 1034 >gi|310823737|ref|YP_003956095.1| DNA polymerase III subunit alpha [Stigmatella aurantiaca DW4/3-1] gi|309396809|gb|ADO74268.1| DNA polymerase III, alpha subunit [Stigmatella aurantiaca DW4/3-1] Length = 1185 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1058 (40%), Positives = 625/1058 (59%), Gaps = 57/1058 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL +H+ YSLL+GA+ + +++ + ++A+TD N+F+ ++F +KA AGI+P Sbjct: 2 SFTHLHLHTLYSLLDGAIRMKDLIKTVKDKGMSSVAVTDHGNMFATIDFYKKAKDAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + + ++ ++L+ AEGY L L S Y+ D Sbjct: 62 IIGMEAYVAGTKGREDRSE-----KVAHHLILVAQNAEGYANLRYLSSTAYM-DGFYYHP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188 RI L + ++GL LT G + A F A + +K +F ++ +Q Sbjct: 116 RIDKKVLAQ-HSKGLFALTACLGGEVTSACFRGDMDHARRAATEYKDIFEPGHFFLEVQS 174 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ + ++ + QL+ ++PL AT ++ ++ ED AH++LM +A +S R R Sbjct: 175 NGIPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLSDGKRLR 234 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + D Y+ + EM+ F D PEA+ NT IA +C+ L++ P+LP F K D Sbjct: 235 HSTDKLYVTSPQEMLEFFRDTPEAVHNTQVIADQCNLELKLGKPMLPTF--KVPD--SHT 290 Query: 307 EENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++ + A GL R + A AK + + YR RL+ ELNVI +M FSGYFLIV DFI Sbjct: 291 PDSFMAELAFEGLHERFKELHHAGAK-FDPEMYRARLNLELNVIQKMGFSGYFLIVQDFI 349 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAKK NIPVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 350 NWAKKANIPVGPGRGSGAGSLVAYALRITDLDPLPYNLLFERFLNPERVSMPDFDIDFCQ 409 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRRDEVI+YV KYG V QIITFGSL+AK+ LRDV R +P+S+ DR+ KL+P Sbjct: 410 DRRDEVIKYVSQKYGEMNVGQIITFGSLKAKSVLRDVCRVFGLPFSEGDRIAKLVPE--V 467 Query: 485 HPVSL-QAIADDSRFREARLADPS-----------VDRLLEISQKLEGLYRHASTHAAGI 532 ++L +AI ++R +E + PS +LEI+ LEGL+R HAAG+ Sbjct: 468 LGITLKEAIEQEARLKEM-MEKPSNVGEVEGKPVTTKDVLEIALALEGLHRQPGMHAAGV 526 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI D+PL + VP+Y+ +TQF +E AGL+KFDFLGLKTLT++Q +LD + + Sbjct: 527 VIADKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQNALDLINRN 586 Query: 593 ---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 G K++ IP D + L+ T G+FQ+ESSG + + ++P C ED+IA +L Sbjct: 587 PPNGKKLERQDIPLHDELMWKLMADGDTAGVFQMESSGFTEMVMKLKPSCFEDVIAAGAL 646 Query: 650 YRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 YRPGP+D+ + V+ NRK+G+E + HP ++P+LK+T GVI+YQEQVMQI+Q+L GY+L Sbjct: 647 YRPGPLDSGMVDVFINRKHGREPVTYPHPALEPVLKDTYGVIVYQEQVMQISQVLGGYTL 706 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK E M ++ F+ G KN + +A IF+L+ KFA+YGFNKSH+A Sbjct: 707 GRADLLRRAMGKKKAEVMQAERAGFLEGCKKNNVDLKVAGEIFDLMEKFAEYGFNKSHSA 766 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY +I+ TAW+K H+PVEF+AA +T E DN +K+ + +AR+ Q++PP VN + Sbjct: 767 AYGLITIHTAWLKAHFPVEFMAALLTSEKDNTDKVVRHIGEAREAGHQVLPPDVNQSDMA 826 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 F D +I + L AI GVG I+EA D F L DFC RVDS+++N++VLE+LV Sbjct: 827 FGAVDGKIRFGLGAINGVGEGAIESIVEARKDGFFKGLFDFCERVDSRRVNKKVLEALVK 886 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--------HEKGTFSDKIT 939 AGA D R QL ++++ +K++ ++F G D Sbjct: 887 AGAFDFEKRPRRQLFETIERAMNRGSASQKDKAAGQSSLFGMLAGPAAGGGGGMKDDYAQ 946 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----RGNNI 995 +E++ E + FE + +GFY SGHPL Y L++ Y V ++ R I Sbjct: 947 VEEWP-EKERLAFEKD--AIGFYVSGHPLHQYDKELKR-----YARPVTSVQRARRDEKI 998 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +V + +++ T+ G R+ WVT + + E FP Sbjct: 999 TVGGIVAALRERPTKTGKRMAWVTLEDLSGSIELVCFP 1036 >gi|160872170|ref|ZP_02062302.1| DNA polymerase III subunit alpha [Rickettsiella grylli] gi|159120969|gb|EDP46307.1| DNA polymerase III subunit alpha [Rickettsiella grylli] Length = 1166 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1058 (39%), Positives = 621/1058 (58%), Gaps = 59/1058 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF+HL +HS YSL++G + + ++DK PA+A+TD +NLF+ ++F Q A GI+P Sbjct: 3 SFIHLHLHSEYSLVDGLIRIEKLVDKACELSMPALAVTDLSNLFATIKFYQAAIKKGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + K +G+ ++LL GY+ LI+L+S+ YL + + Sbjct: 63 IIGAECRV------KDDQEGQEY-----QLILLCQNLRGYRNLIQLISKSYLENAKEGQP 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 + W I +EGLI L+G G I + +A L + +LF +R Y+ +QR Sbjct: 112 LLQKDWFS-IYSEGLIALSGAREGDIVSCLMKKNKSLAVDYLQFWLRLFPNRFYLQVQRL 170 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R + V LA + +P+VATN FL ED+EAH+ + + + +++ R + Sbjct: 171 GRPLEEEYIELSVGLAASFNVPVVATNEVCFLVPEDFEAHEAKVCINNGYLLNDPKRLKF 230 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T YL++ EMV +F+D+P AL N+VEIA+RC+ +++ A LP F E Sbjct: 231 YTNQQYLRSMEEMVVLFADIPSALSNSVEIAKRCNLEIELGASFLPNFPIPE----GMSA 286 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD---------------------YRQRLDFELN 346 E L +A +GL L + + ++ Y RL EL Sbjct: 287 EKLLTQEAQSGLTRYLGSQSFLRVSQTKNKEFQPIEKLTSPQTFKAFEKIYFDRLHSELQ 346 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI M F+ YFLIVADFI+WAKKN IPVGPGRGSGAGS+ AY L IT +DPLR+ LLFER Sbjct: 347 VINSMGFASYFLIVADFIRWAKKNKIPVGPGRGSGAGSLVAYVLQITGLDPLRYDLLFER 406 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPDFDIDFC + RD VI YV +YG V+QIIT+GS+ A+A +RDVGR L Sbjct: 407 FLNPERISMPDFDIDFCMEGRDRVIDYVTTRYGRNAVSQIITYGSMAARAVVRDVGRVLG 466 Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 PY VD++ KLIP + + +A+ + + + + L+++++KLEGL R+ Sbjct: 467 YPYGMVDKIAKLIPFELGITLE-KALTQEDELKTRYENEDEIKILIDLAKKLEGLVRNVG 525 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA G+VI L P+Y + +TQF+ IEK GL+KFDFLGL+TLT+ + Sbjct: 526 KHAGGVVIAPSQLVDFTPLYCERGGTHCITQFDKDDIEKVGLVKFDFLGLRTLTI----I 581 Query: 587 DFLAQRGVK--------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 D++ Q K +D+ IP DD +T+ LL T IFQLES GMR ++ + PD Sbjct: 582 DWVVQAINKKKKPEEELLDIGTIPLDDVKTFDLLKACKTTAIFQLESRGMRDLIKRLCPD 641 Query: 639 CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 ++I+ALV+L+RPGP+ + +V + NRK+G+ + HPL++P+L T G+I+YQEQVM Sbjct: 642 SFDEIVALVALFRPGPLQSGMVDDFINRKHGRAHVQYAHPLLEPILSSTYGIILYQEQVM 701 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 QIAQ+L+GY+L AD+LRRAMGKK EEM +Q+ F+ GA + GI +++A IF+L+ KF Sbjct: 702 QIAQVLAGYTLGAADLLRRAMGKKKSEEMAQQRTIFMKGAEQEGIERSLANQIFDLMEKF 761 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 ADYGFNKSH+ AYA++SYQTAW+KTHY EF+AA ++ +MD+ +K+ F + R N+ I Sbjct: 762 ADYGFNKSHSVAYALVSYQTAWLKTHYAAEFMAAVLSSDMDHTDKVVIFLDECRAMNLPI 821 Query: 817 MPPSVNTPCVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 +PP +N F V D+ I Y L AIKG+G ++E F L D C RVD Sbjct: 822 LPPDINCSEYKFTVDDDTGAIRYGLGAIKGLGLGAIEMLIEQRQQDAFRDLFDLCQRVDF 881 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 +KLNRR +++L+ +G+LD FG +R LL++++ + A +++ ++ F E + Sbjct: 882 QKLNRRGIDALICSGSLDSFGLNRATLLENVEAALQAAIQKSLTKSSGQKDFFGLEMVSH 941 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 S+++T +K + R + E+ LGFY SGHP++ Y L ES+ G+ Sbjct: 942 SNQMTHQKDWPKLE--RLQAEKDALGFYLSGHPIENYSNELPHFITSSLRESMIK-SGHT 998 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I +A V++ + T++G R+ +T + E F Sbjct: 999 ITIAGWVLNIRSLWTKRGDRMAILTLEDTNGRLEVTLF 1036 >gi|254251803|ref|ZP_04945121.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124894412|gb|EAY68292.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 1177 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1028 (40%), Positives = 616/1028 (59%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC + I D+ ++ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGCDVWIANPDDRDKPSR----------LLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ ++GL+ L+G G I A + + A + + K+F Y+ LQR Sbjct: 114 AELDASWLEGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + LP+VAT+ + F++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAASLAASLRLPVVATHPTQFMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSREGLEKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 SQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+S+ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCIANNLVVLPPDINLSHYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRARDEKPFTDLFDFCERIDRRIVNRRTIEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945 D +R QLL S+ + A E N E+ AH L Sbjct: 889 DSLNANRAQLLASVPLAMEAADQAEANALQAGLFDMGAESPHAH---------ALVDEPA 939 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + R + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S Sbjct: 940 WDDKRRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGDLKEGRDKLVAGIIASL 995 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 996 RTQMTQRG 1003 >gi|297617868|ref|YP_003703027.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM 12680] gi|297145705|gb|ADI02462.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM 12680] Length = 1131 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1039 (40%), Positives = 630/1039 (60%), Gaps = 41/1039 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL HS YSLL+GA+ +++++ + PA+AITD L+ ++F ++A AGI+P Sbjct: 3 GFVHLHTHSEYSLLDGAVRVSSLVKRAKELGMPALAITDHGVLYGVIDFYKQARKAGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + T + + + LL +GY+ L+++VS+ +L + Sbjct: 63 IIGCEVYVAPRHRFDRTPKVDD---ALYHLTLLCENQDGYRNLVQMVSKAFL-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 R+ L++ G GLI L+G +G + + + A F+++FG+ ++ +Q Sbjct: 119 RVDKELLEQHG-RGLIALSGCIAGEVPELLLAGNYEEARAVAGYFREVFGENNFFLEVQD 177 Query: 189 HRGYDRYRESQVVQLAYTH-----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 H E +VV A H ++PLVATN+ +L+ +D HDVL+ + V++ + Sbjct: 178 HG----LSEQRVVNEAMCHLSRELDVPLVATNDVHYLNRDDAFIHDVLLCIQTGKVLTDE 233 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R P+ Y K+ EM S+F+ +PEA+ NTV IA RCS + LP F E Sbjct: 234 SRMRFPCPEFYFKSGEEMSSLFAHIPEAVTNTVTIAERCSVDFGFDSFCLPEFPLPE--- 290 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L + A L R A G D RL EL+VI RM F+GYFLIV D Sbjct: 291 -GATAESYLEDLAWKKLRERFAH----PGTKVID---RLRLELDVINRMGFAGYFLIVQD 342 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 + WAK I VGPGRGS AGS+ +Y L ITDI+PL + LLFERFLNP+R++MPD DIDF Sbjct: 343 LVHWAKNRGIRVGPGRGSAAGSLVSYVLGITDINPLEYGLLFERFLNPERITMPDIDIDF 402 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD+VI YV KYG +RVAQIITFG++ A+AA+RDVGR L+ PYS+VDR+ K++P + Sbjct: 403 CFEKRDQVINYVIEKYGSDRVAQIITFGTMAARAAIRDVGRVLEYPYSEVDRIAKMVPAE 462 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 +SL +A+ EA D V RL++ ++ LEG RHAS HAAG+VIG LS+ Sbjct: 463 LG--ISLDRALEVSGDLAEAYKNDFRVRRLVDTARALEGFPRHASVHAAGVVIGRESLSR 520 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 ++P+ R + VTQF + +E+ GL+K D LGL+TLT++ + LD + + RG ++D+ Sbjct: 521 VLPLQRTADGHV-VTQFTKETVEEIGLLKMDILGLRTLTVIDRCLDIIRKTRGYEIDIDH 579 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I DD +TY LL+ T+G+FQLES G+R+ L+ ++P ED+IA+++LYRPGP+ + +V Sbjct: 580 ISLDDPDTYRLLSEGDTVGVFQLESEGLRRLLQEVRPSSFEDLIAIIALYRPGPLGSGMV 639 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + NRK+G++ I +HP ++P+L+ET GVI+YQEQVM+IA L+ +S+ EADVLRRAMG Sbjct: 640 EDFVNRKHGRQPIEYLHPKLEPILRETYGVILYQEQVMRIASELADFSMGEADVLRRAMG 699 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK +E+ Q+ +F+ GA +NGI + A ++FEL+ FA YGFNKSH+AAYA++SYQTA+ Sbjct: 700 KKKPDELAAQRNKFVEGAYRNGIDRETASSLFELMEHFAGYGFNKSHSAAYALVSYQTAY 759 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYPVE++ A +T +DN +++ + ++ R+ + I+PP +N +F V RI + Sbjct: 760 LKAHYPVEYMCAFLTSVIDNQDRVVYYLKECRRMGMDILPPDINESFENFTVAGGRIRFG 819 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L AIK VG R I+EA + F SL +FC RVD ++LN+RV+E+L+ AGA D G R Sbjct: 820 LGAIKNVGINAVRSIIEARKEGRFSSLLEFCLRVDLRQLNKRVMENLILAGAFDSLGLKR 879 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEK--FSVENSSVRFEN 954 + L LD A V + ++F + D + K FSV+ + + Sbjct: 880 KEALSLLDECLALAVEVRAAMDSAQPSLFVDDAAATVVQDPVPRSKGEFSVQE---KLKK 936 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ VLGFY S +PL+ Y+ ++ + E G +R+ A V + ++ +++KG Sbjct: 937 EKEVLGFYVSQNPLEEYREVIPYLMSHEISELSKLDEGQVVRIVATVTAMKRSRSKKGEP 996 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + + + EA FP Sbjct: 997 WARLVLEDFTGKVEAVVFP 1015 >gi|294341044|emb|CAZ89439.1| DNA polymerase III subunit alpha [Thiomonas sp. 3As] Length = 1146 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/984 (41%), Positives = 589/984 (59%), Gaps = 33/984 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +VHL+ H+ YS+++GAL +++++ A D Q A+AITD NNLF+ + F + A AG++PI Sbjct: 3 YVHLRTHTEYSIVDGALRVDDMVPAAARDGQGALAITDFNNLFATVRFYKAALDAGVKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + + + P ++LLV GY L +L+SR +L +Q + Sbjct: 63 IGCDV---------LLGSARHP-GQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRAV 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188 + WL+ EGLI L+G G I +A + A +F R Y+ LQR Sbjct: 113 VQWEWLEGGLAEGLIALSGAHEGAIGQALLQGDTATARDLARQHAAVFEGRFYIELQRGG 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 H + + ++ V LA LP+VAT+ FL +D++AH+ + +A + R R Sbjct: 173 HAACEPHVQA-AVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRK 231 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T Y K+++EM ++F+D+P AL NTV IA+RC+ +L + P LP F + Sbjct: 232 FTAQQYFKSQAEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPQG----LTP 287 Query: 308 ENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 R +A GLE RLA Q + + Y+QRL++EL +IA+M F GYFLIVADF Sbjct: 288 AEFFRQQAQDGLEQRLAVLYPQADQCEAARPR-YQQRLEYELGIIAKMGFEGYFLIVADF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK N PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 INWAKNNGCPVGPGRGSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+ RD VI YV+ KYG + V+QI TFG++ A+AA+RDVGR L + Y+ D + KLIP P Sbjct: 407 QENRDRVIDYVKEKYGVDAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKP 466 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +SL A+ + + + V +LL+++Q+LEGL R+ HA G++I L+ Sbjct: 467 GQHISLADALKQEPLLAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDF 526 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSL- 600 P+Y S V+QF+ +E AGL+KFDFLGL TLT+L+ + + + D L Sbjct: 527 CPLYAQPGSTDAVSQFDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLE 586 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD ++Y L+ T+ +FQLES GM+ L +PD EDIIALV+LYRPGP+D I Sbjct: 587 DIPLDDAKSYKLMAKGDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIP 646 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y RK GKE +V P + +L+ET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMGK Sbjct: 647 TYCARKAGKEDVVYPDPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGK 706 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K EEM + + F GA+KNGI A IF+L+ KFA YGFNKSHAAAYA+++ QTAWM Sbjct: 707 KKPEEMAQHRGIFAEGAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWM 766 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYS 838 K HYP EFLAA+M++ +D+ +K+K +DA+ I ++PP VN F D++ I Y+ Sbjct: 767 KAHYPAEFLAANMSIALDDTDKLKILVEDAQACGINVLPPDVNASQWRFDPVDSKTIRYA 826 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L AIKG G ++ A ++PF SL DF RVD +LN+RVLE+L AGA D R Sbjct: 827 LGAIKGNGQAAVEAMIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPER 886 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKG----TFSDKITLEKFSVENSSVRFE 953 ++ +++ YA E R ++FA + + + L + + + Sbjct: 887 AAVMAAVETAMDYAAQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLS 946 Query: 954 NEQRVLGFYFSGHPLDVYKPILRK 977 E+ +G+Y SGH D +R+ Sbjct: 947 FEKTAIGYYLSGHLFDASAEEVRR 970 >gi|237808841|ref|YP_002893281.1| DNA polymerase III, alpha subunit [Tolumonas auensis DSM 9187] gi|237501102|gb|ACQ93695.1| DNA polymerase III, alpha subunit [Tolumonas auensis DSM 9187] Length = 1160 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/1048 (40%), Positives = 631/1048 (60%), Gaps = 44/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +HS +S+L+G + ++ + A + A+AITD N + F A + GI+ Sbjct: 4 PRFVHLHIHSDFSMLDGLQKIKPLVARAAENNMVAMAITDQMNQSGLVRFYGDAHSKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + ++ G F ++ L EG Q LI+L+S+ +L + Sbjct: 64 PIIGVDFWVQSEE------LGDELF----HLIGLAMNNEGQQNLIQLISKGFLRGHIQGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E T G+I+L+GG G I + + + E+ +++ F +R Y+ L R Sbjct: 114 AVIDKAWLAEHAT-GVILLSGGRDGDIGKFLLKGNQAMVERCTAFYQQHFPERFYLELIR 172 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246 D + V+LA +LP+VATN+ +FL+++D++AH++ +A+ + RP Sbjct: 173 TGRLDEETYLHMAVELAIQQDLPVVATNDVVFLNKDDFDAHEIRVAIHDGYTLDDARRPK 232 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R + Y++ + EM +F D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 233 RYSNQQYMRTQDEMCELFKDIPEALANSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA A+ Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVMKSKEGLEERLAFLFPDPAERAEKRIAYDERLDIELKVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLALDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 MDRRDEVIDHVAQMYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E D V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFDVEPKLVELYEQDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT+++ +LD + R VD+ Sbjct: 527 PLYCDDQGLQPVTQFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINPRLKTEGKPPVDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD ++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDPTSFKILKNSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ L+GY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDIQWQHDSLQPILEPTYGIILYQEQVMQIAQTLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F SGA NG+ +A++IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSGFESGAVSNGVDGELAMHIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTH+P EF+AA MT +MDN +KI + ++ ++++PP VNT F V Sbjct: 767 VSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLKLIPPDVNTGQYRFTVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + + Y + A+KGVG I+ A + PF L DFC+RVD K+LN+RV+E L++AG Sbjct: 827 ERGEVVYGIGAVKGVGEGPVEAIIAARNEGGPFRDLFDFCNRVDIKRLNKRVMEKLIYAG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV---- 945 ALD G R L+ SL+ K A+ K+ ++F F+D L + Sbjct: 887 ALDRLGPHRAALMASLEEAMKAAEQKAKDAALGQNDLFGD---LFADDGVLPTPTFADVP 943 Query: 946 ENSSVRF-ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 E S ++ + E+ LG Y +GHP++ Y L+ + T R A +V++ Sbjct: 944 EWSDQKWLDGERETLGLYLTGHPINQYLAELKHYTSGRLCDLQPTERDKPAVAAGLVLNA 1003 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+++G +T + + + F Sbjct: 1004 RIMVTKRGTKMGILTLDDRSGRLDITLF 1031 >gi|119477117|ref|ZP_01617353.1| DNA polymerase III subunit alpha [marine gamma proteobacterium HTCC2143] gi|119449480|gb|EAW30718.1| DNA polymerase III subunit alpha [marine gamma proteobacterium HTCC2143] Length = 1207 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1086 (39%), Positives = 623/1086 (57%), Gaps = 85/1086 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS +SL++G + + ++ K+A PA+A+TD N ++ ++F + A AAGI+P Sbjct: 4 SFVHLRLHSEFSLVDGLVRIKPLVQKVADAGMPAVALTDHCNFYALIKFYKAAMAAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC D + D+ T +V + LL ++GY+ L EL+SR Y Q Sbjct: 64 ILGC--DFHVVDDTDET--------SVSHLTLLAQNSKGYRNLTELISRAYQDGQYLGRP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I SWL E TEG+I L GG G + N +A RL ++ LF Y+ LQR Sbjct: 114 YIKQSWLTEY-TEGVIALGGGRQGDVGMLLVSNKLDLARTRLASYMSLFPGSFYMELQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R ++ + V LA + P+VATN FL DYEAH+ + + + R R Sbjct: 173 GRQHEEDYLHKAVTLATELDCPVVATNEVCFLKTGDYEAHETRVCIHEGRALDDPRRSRN 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----IEKEC-- 300 + YL+ EM +FSD+PEAL NTVEIA+RCS +++ LP + EK+ Sbjct: 233 YSEQQYLRTPEEMAELFSDIPEALINTVEIAKRCSAEIELGEIYLPEYPIPDDYEKDAFF 292 Query: 301 -----DDIQKEEENEL-----------------------RNKAVAGLEVRLA----QGAI 328 D ++ + E L R ++ GL RLA AI Sbjct: 293 QHEPYDGLKAQTEKSLAAKWVGKEATEDYAKELRTGIFFRKISIEGLNDRLAFLFGDDAI 352 Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388 + H ++YR RLDFEL++I M F GYFLIV DFIQWAK + IPVGPGRGSGAGS+ AY Sbjct: 353 S---HIKEYRDRLDFELDIILEMGFPGYFLIVMDFIQWAKDHEIPVGPGRGSGAGSLVAY 409 Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448 A ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D RD+VI YV + YG + V+QIIT Sbjct: 410 AQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDNRDKVISYVADNYGRDAVSQIIT 469 Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508 FG++ AKA +RDV RA Y D+L K+IP + + +A + R+ D Sbjct: 470 FGTMAAKAVIRDVARAQGKSYGLADKLSKMIPFEVGMTLE-KAFEQEDILRDFLRDDEQA 528 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 + +++ +LEG+ R+ HA G+VI L+ P+Y D VTQF+ +E+AGL Sbjct: 529 QEIWDMAVQLEGITRNVGKHAGGVVIAPSKLTDFSPLYCDDSGGGLVTQFDKNDVEEAGL 588 Query: 569 IKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 +KFDFLGL+TLT++ ++ + + +++ IP DD +Y LL T +FQL Sbjct: 589 VKFDFLGLRTLTIIDWAVKMINRPKDDGSSPNLEIERIPLDDRASYQLLKRAETTAVFQL 648 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI-----HP 676 ES GM+ ++ +QPD +ED+IALV+L+RPGP+D+ +V + NRK+G+ ++ H Sbjct: 649 ESRGMKDLIKRLQPDNLEDMIALVALFRPGPLDSGMVDDFVNRKHGRAEVAYPDAKYQHE 708 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736 + P+L+ T GVI+YQEQVMQIAQ L+GYSL ADVLRRAMGKK EEM +Q+ F GA Sbjct: 709 WLKPILEPTYGVIVYQEQVMQIAQELAGYSLGGADVLRRAMGKKNAEEMARQRTSFEDGA 768 Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796 G+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQTAW+KTHYP EF+AA+M+ E+ Sbjct: 769 KAKGVDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKTHYPAEFMAATMSSEL 828 Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIME 855 N +KI F ++ R + P VN F V + I Y L AIKG+G ++++ Sbjct: 829 QNTDKIVIFIEECRAMKLDYRLPDVNEGEYMFTVNKEGAIVYGLGAIKGLGEGPIENMIK 888 Query: 856 ASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914 + PF SL DFC R D +K+N+R +++L+ +G+ D G R LL ++ K A+ Sbjct: 889 TRDESGPFTSLFDFCERTDPRKVNKRAIDALIRSGSFDTLGVERAILLAAMPEAVKAAEQ 948 Query: 915 VEKNRTNKHENIF-----AHEKG-TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 NR ++F A E G +SD + S + + E+ LG Y +GHP+ Sbjct: 949 SAGNRDAGMMDLFGDVVSADEHGDVYSDYQNVRPLSPKE---KLGGEKDTLGLYVTGHPI 1005 Query: 969 DVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D Y+ LR+ + ++ NN +A +VV + K ++G + +VT + + Sbjct: 1006 DEYEKELRQF----VRNRIVDLKADFNNQTMAGLVVGLRTMKNKRGDTMAFVTLDDRSAR 1061 Query: 1027 YEANFF 1032 E +FF Sbjct: 1062 IEISFF 1067 >gi|319794191|ref|YP_004155831.1| DNA polymerase iii, alpha subunit [Variovorax paradoxus EPS] gi|315596654|gb|ADU37720.1| DNA polymerase III, alpha subunit [Variovorax paradoxus EPS] Length = 1172 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/989 (42%), Positives = 594/989 (60%), Gaps = 42/989 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ ++ AAD+QPA+AITD NNLF A++F ++ G++P+ Sbjct: 2 FVHLRLHTEFSVVDGTNRIDEVIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK-QSV 129 IG ++ I+ GK P + +VLLV EGY L EL++R + + G+ QS Sbjct: 62 IGAEIFIE--------GLGKEP-GVLTRLVLLVQNMEGYLSLSELLARAWTQNVGRGQSQ 112 Query: 130 RIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C L WL+E+ + GLI L+G +GP+ + A + L +F R Y+ LQR Sbjct: 113 AACKLEWLEEL-SGGLIALSGAQAGPLGVPLLQGQGERAAELALKLAGMFPHRFYIELQR 171 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D V+LA +LP+VAT+ F +DYEAH+ + ++ ++ R R Sbjct: 172 AGRPEDEPHVIAAVKLAARLKLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVR 231 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK-ECDDIQK 305 T + Y K+ +EM ++F+D+P AL NTVEIA+RC+ L + P LP F + ++ Sbjct: 232 KFTEEQYFKSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFVSEGVRM 291 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ R ++ GLEVRLA A + Y +RL+FE+N I M F GYFLIV D Sbjct: 292 PIDDFFRQESFEGLEVRLAHLYPDAAKRDAERPRYVERLEFEINTILNMGFPGYFLIVGD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK+N PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FIKWAKENGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI YV++KYG V+QI TFG++ A+AA+RDVGR L M Y D + KLIPN Sbjct: 412 CQGNRDRVIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNK 471 Query: 483 PAHPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 P V+LQ AI + + + + V L+E++QKLEG+ R+ H Sbjct: 472 PGMSVTLQYPPEKKIEGDKNNYAIEMEPQLAQRIEKEEEVRMLVELAQKLEGMTRNIGMH 531 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 A G++I L+ P+Y+ SD V+Q++ +E GL+KFDFLGL TLT+L+ + DF Sbjct: 532 AGGVLIAPGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKDF 591 Query: 589 LAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + R + IP D TY L + T +FQ ES GM+ L+ +P +ED+IA Sbjct: 592 IVARHKGQENFAFENIPLKDAATYRLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIA 651 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 L +LYRPGP+D I + RK+G+E++ HP + ML ET G+++YQEQVMQ AQ+L GY Sbjct: 652 LNALYRPGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGY 711 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKS 764 SL AD+LRRAMGKK EEM + +E+F +GA + +GI + A IF+L+ KFA YGFNKS Sbjct: 712 SLGGADLLRRAMGKKKLEEMAEHREKFRAGALATHGIPQDKADEIFDLMEKFAGYGFNKS 771 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNT 823 HAAAY++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + F I PP VN Sbjct: 772 HAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNR 831 Query: 824 PCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881 F+ V D I Y L A+KG G ++ A + PF SL DFC R+D +++N+R Sbjct: 832 GNYRFEPVTDKVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRT 891 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITL 940 +E+L+ AGA D +R L+ S+D ++A +IF E G+ + + L Sbjct: 892 VEALIKAGAFDAIQQNRAALIASVDRAFEFAS--ATAANAAQVDIFGDAEHGSATAEPDL 949 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + R E+ +GFY SGH D Sbjct: 950 VDATPWGVKERLTLEKTAIGFYLSGHLFD 978 >gi|303253323|ref|ZP_07339472.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248125|ref|ZP_07530153.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648005|gb|EFL78212.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855302|gb|EFM87477.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 1158 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1059 (39%), Positives = 621/1059 (58%), Gaps = 72/1059 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S++ + ++ A+ A+A+TD +N ++F +A +G++PI Sbjct: 6 FVHLKVHSDFSMINSLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALGSGLKPI 65 Query: 71 IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IG + + D +D ++T LL GY + L+S+ Y QG Sbjct: 66 IGADIFVRPEPDSEDFFELT--------------LLAKNNTGYHNITLLLSKAY--QQGY 109 Query: 127 QSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + +WL E+ EG+I+L+G +G + +A + A++ + +++ F + Y+ Sbjct: 110 VEFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYLA 168 Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 169 LCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPK 228 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ LP F + Sbjct: 229 RPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYFLPNFPTGDLS-- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV Sbjct: 287 ---TEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLIV 343 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 344 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDV 403 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLIP Sbjct: 404 DFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIP 463 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 464 PDPGMTLA-KAFDAEPKLPELYEADEEVKELIDMARKLEGVTRNAGKHAGGVVIAPTAIT 522 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR + Sbjct: 523 DFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKEP 582 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ Sbjct: 583 VRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPL 642 Query: 656 DNIVVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++ +V N +RK+G E++ S+ P++DP T GVI+YQEQVMQIAQ+L+G Sbjct: 643 ESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDP----TYGVIVYQEQVMQIAQVLAG 698 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKS Sbjct: 699 YTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKS 758 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 759 HSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSG 818 Query: 825 CVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR Sbjct: 819 KHRFSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTF 878 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +GA D G R L+++L++ K +++H + A + +T Sbjct: 879 EGLIMSGAFDKLGPHRAALMKNLEDALK--------ASDQHSKMEALGQSDMFGVLTETP 930 Query: 943 FSVENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 V+N+ E E+ LG Y SGHP+ + L E T RG Sbjct: 931 EEVQNAYANTPKWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQ 990 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +A +++ + T++GSR+G T + + + + F Sbjct: 991 VVTVAGIIMGSRIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|239816093|ref|YP_002945003.1| DNA polymerase III, subunit alpha [Variovorax paradoxus S110] gi|239802670|gb|ACS19737.1| DNA polymerase III, alpha subunit [Variovorax paradoxus S110] Length = 1172 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/989 (42%), Positives = 594/989 (60%), Gaps = 42/989 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ ++ AAD+QPA+AITD NNLF A++F ++ + G++P+ Sbjct: 2 FVHLRLHTEFSVVDGTNRIDEVVKAAAADKQPALAITDLNNLFGAVKFYKQGRSKGVKPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK-QSV 129 IG ++ I+ GK P + IVLLV EGY L EL++R + + G+ QS Sbjct: 62 IGAEIFIE--------GLGKEP-GVLTRIVLLVQNMEGYLHLSELLARAWTQNVGRGQSQ 112 Query: 130 RIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C L WLQE+ GLI L+G +GP+ + A + L +F R Y+ LQR Sbjct: 113 AACKLEWLQEL-QGGLIALSGAQAGPLGAPLLQGQEERAAELALQLAGMFPHRFYIELQR 171 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D V+LA LP+VAT+ F +DYEAH+ + ++ ++ R R Sbjct: 172 AGRPEDEPHVIAAVKLAARLRLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVR 231 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y K+ +EM ++F+D+P AL NTVEIA+RC+ L + P LP F + + Sbjct: 232 KFTEEQYFKSSAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRM 291 Query: 307 EENEL-RNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 +E R ++ GLE RLA + Y +RL+FE+N I M F GYFLIV D Sbjct: 292 PIDEFFRQESFLGLEERLAHLYPDPARREAERPRYVERLEFEINTILNMGFPGYFLIVGD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FIKWAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI YV++KYG + V+QI TFG++ A+AA+RDVGR L M Y D + KLIPN Sbjct: 412 CQGNRDRVIDYVKDKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNK 471 Query: 483 PAHPVSLQ------AIADDSRFR---EARLA-----DPSVDRLLEISQKLEGLYRHASTH 528 P PV++Q D + + E +LA + V L+E++QKLEG+ R+ H Sbjct: 472 PGQPVTIQYPPNPKVEGDKNNYAIEMEPQLAARIEKEEEVRMLVELAQKLEGMTRNIGMH 531 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 A G++I L+ P+Y+ SD V+Q++ +E GL+KFDFLGL TLT+L+ + +F Sbjct: 532 AGGVLIAPGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKEF 591 Query: 589 LAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + +R + I DD ETY L + T +FQ ES GM+ L+ +P +ED+IA Sbjct: 592 IVKRHKGQENFAYENIKLDDRETYKLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIA 651 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 L +LYRPGP+D I + RK+G+E++ HP + ML ET G+++YQEQVMQ AQ+L GY Sbjct: 652 LNALYRPGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGY 711 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKS 764 SL AD+LRRAMGKK EEM + +E+F +GA S +GI + A IF+L+ KFA YGFNKS Sbjct: 712 SLGGADLLRRAMGKKKLEEMAEHREKFRAGALSTHGIPQDKADEIFDLMEKFAGYGFNKS 771 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNT 823 HAAAY++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + F I PP VN Sbjct: 772 HAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKNFGITFEPPDVNR 831 Query: 824 PCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881 F+ V D I Y L A+KG G ++ A + PF SL DFC R+D +++N+R Sbjct: 832 GNYRFEPVTDKVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRT 891 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITL 940 +E+L+ AGA D +R L+ S+D + + +IF E G+ + + L Sbjct: 892 VEALIKAGAFDSIQQNRASLIASVD--RAFEFAAATEANAAQVDIFGDSEHGSATQEPEL 949 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + R E+ +GFY SGH D Sbjct: 950 VDATPWGVKERLTFEKTAVGFYLSGHLFD 978 >gi|307546379|ref|YP_003898858.1| DNA polymerase III subunit alpha [Halomonas elongata DSM 2581] gi|307218403|emb|CBV43673.1| DNA polymerase III, alpha subunit [Halomonas elongata DSM 2581] Length = 1169 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1056 (40%), Positives = 619/1056 (58%), Gaps = 55/1056 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +SL++G + L ++ PA+A+TD NLF+ +++ A AG++P+ Sbjct: 5 FVHLRVHSEFSLVDGLIRLKPLIKAAVEQGTPALALTDEANLFALVKYYTGAQGAGLKPL 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG +L + N P + LL A GY+ L EL+SR ++ Q + Sbjct: 65 IGS--------DLWLANPHDEEHPY--RLTLLAMDATGYRNLTELISRGWVEGQRQGRAL 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + SW+ +EGLI L+GG G I R + A L + F R Y+ L R Sbjct: 115 LERSWVM-AQSEGLIALSGGREGDIGRHLLSDHHAEARALLDEWNAAFPGRYYLELTRTG 173 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + V LA + P+VATN+ FL ED+ AH+ +A+ + R R Sbjct: 174 RALEEECVHLSVDLAVETQTPVVATNDVRFLEREDFWAHETRVAIGEGKALDDPRRERHY 233 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK EM +FSD+PEALEN+V IA RC+ +++ LP + E +E Sbjct: 234 TEEQYLKTPEEMAELFSDIPEALENSVMIAARCNVDVRLGEIFLPEYGIPEG----MTQE 289 Query: 309 NELRNKAVAGLEVRL----------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 R + GL RL GA A+ YR+RLDFEL++I +M F GYFL Sbjct: 290 EFFRKISHDGLTERLDFLYPAERYPRDGAEYAEIDAR-YRKRLDFELDIILQMGFPGYFL 348 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFIQWAK N++PVGPGRGSGAGS+ AYA ITD+DPL + LLFERFLNP+R+SMPDF Sbjct: 349 IVMDFIQWAKDNDVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDF 408 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC ++RD VI YV +YG V+QI+TFG++ AKA +RDV RA PYS D+L KL Sbjct: 409 DVDFCMEKRDRVIEYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGDKLSKL 468 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + + +AI D+ + +E AD + E++ KLEG+ R HA G+VI Sbjct: 469 IPFEVGMTLG-KAIEDEPQLKEFLEADEEAQEIWEMALKLEGITRGTGKHAGGVVIAPTK 527 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGV 594 L+ P+ D Q++ IE AGL+KFDFLGL+TLT++ +++ + A RG Sbjct: 528 LTDFSPLLCDEDGSGLRVQYDKNDIEDAGLVKFDFLGLRTLTIIDWAVEMVDKVRAARGE 587 Query: 595 K-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + +++ IP DD T+ +L T +FQLES GM++ ++ + PD +ED+IALV+L+RPG Sbjct: 588 EPLNIDAIPLDDVPTFDMLKKAETTAVFQLESRGMKELIKRLLPDSLEDMIALVALFRPG 647 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V + NRK+G+ +I HP L+ P+L+ T G+I+YQEQVMQIAQ+++GYS Sbjct: 648 PLQSGMVDDFINRKHGRAEISYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVMAGYS 707 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L +AD+LRRAMGKK EEM KQ+ F+ G ++NGI K +A NIF+L+ KFA YGFNKSH+ Sbjct: 708 LGQADMLRRAMGKKKPEEMAKQRAGFMEGCAENGIDKDLAGNIFDLVEKFAGYGFNKSHS 767 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQTAW+K HYP F+AA ++ EMDN++K+ ++ R + + PP+VN Sbjct: 768 AAYALVSYQTAWLKAHYPGPFMAAVLSTEMDNLDKVVPLIEECRSLGLTVTPPNVNVGGY 827 Query: 827 DFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V + R+ Y L AI+GVG I+EA A+ F L DFC RVD +++N+R LE+ Sbjct: 828 KFTVDAEGRVIYGLGAIRGVGEGPIGAIVEAREAEGDFRDLFDFCRRVDPQRMNKRTLEA 887 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT----NKHENIFAHEKGTFSDKITL 940 L+ AGALD G SR L SLD+ K A + N+ + FA+E + Sbjct: 888 LIRAGALDNLGPSRAVLAASLDDALKAAAQSQTNQNLGMMDMFGEAFANEPDDDAADAYA 947 Query: 941 EKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IR 996 + V + S R E+ LG Y +GHP+D Y+ L + + ++ + R Sbjct: 948 DYRRVRDWSDKERLAGEKDTLGLYLTGHPIDEYEHELSRF----VSTRIVDLKPSREPQR 1003 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +VV + K+++G + +VT + EA+ F Sbjct: 1004 VAGLVVGVRTMKSKRGDTMAFVTLDDRTGRIEASLF 1039 >gi|166712747|ref|ZP_02243954.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1196 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1009 (41%), Positives = 604/1009 (59%), Gaps = 64/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G +S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRNS-LAGRLFSEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G +R+ + + A LP+VA+N++ FL D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGREGEERFNQF-ALNAAGVRGLPVVASNDARFLYASDFNAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D YLK+ EM ++F+D+P+A++NT +A+RC+ +++ L Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I M Sbjct: 291 PAYPVPEDETL----DSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTIINMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADP----------SVDRLLEISQKLEGLY 522 D + KLIPN ++L+ + + ++ +A P V L++++++LE L Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPELIQRYQVEDDVRDLMDLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PLS+ P++ D R PVTQF+ +E GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632 LT++ ++ + R + VD++ IP DD TY + G G +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEIILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+ Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 RV + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942 Query: 931 KGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + S ++ L + +E+ LGFY SGHP D ++ +R++ Sbjct: 943 DPSASAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVREL 991 >gi|90020753|ref|YP_526580.1| DNA polymerase III subunit alpha [Saccharophagus degradans 2-40] gi|89950353|gb|ABD80368.1| DNA polymerase III, alpha subunit [Saccharophagus degradans 2-40] Length = 1173 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1064 (39%), Positives = 620/1064 (58%), Gaps = 66/1064 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+V + +SL++ + + ++ + A Q PAIA+TD +N F ++F + A AG+ Sbjct: 2 SSQFVHLRVRTEFSLVDSIIRVKPLVARAAQAQMPAIAVTDFHNFFGLVKFYKAAQGAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI GC + +M + P + LL EGY+ + EL+S Y Q Sbjct: 62 KPICGC--------DFRMEPLDEESNPAI--FTLLAMNPEGYRNITELISLSYQKGQKHG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL++ + G+I L+GG G + +A N AE L + ++ +R Y+ LQ Sbjct: 112 EPYIKFEWLEKF-SAGVIALSGGRVGEVGQALVGNRQVDAEAALQRWIDVYPNRFYIELQ 170 Query: 188 R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R +RY + + LA ++LP+VATN+ FL ++ ++ H+ + + + R Sbjct: 171 RTGRENEERYLH-KAMALAEKYQLPVVATNDVRFLDQDLFDVHEARVCIGEGRALDDPRR 229 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T YLK EM +FSD+PEA+ENTVEIA+RCS +Q+ LP + E Sbjct: 230 ERKYTDQQYLKTAEEMQELFSDIPEAIENTVEIAKRCSIEIQLGTYFLPEYPIPEG---- 285 Query: 305 KEEENELRNK-AVAGLEVRLAQGAIAK------GYHAQDYRQRLDFELNVIARMKFSGYF 357 EN K + GLE RL I K Q Y RL FEL++I +M F GYF Sbjct: 286 -MTENSFFEKISYEGLERRLK--TILKEDDPDYATKKQPYLNRLKFELDIIIQMGFPGYF 342 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK +NIPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPD Sbjct: 343 LIVMDFIQWAKDHNIPVGPGRGSGAGSLVAYVLDITDLDPLQYDLLFERFLNPERVSMPD 402 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC ++RD+VI YV + YG + V+QIITFG++ AKA +RDV R Y D+L K Sbjct: 403 FDVDFCMEKRDQVISYVADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSK 462 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP DP ++ +A + RE D + +++ KLEG+ R+ HA G+VI Sbjct: 463 MIPPDPGMTLT-KAFEQEEPLREFLAMDGDGQEIWDMALKLEGITRNVGKHAGGVVIAPT 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 L P+Y D VTQF+ +E+AGL+KFDFLGL+TLT++ ++ + + K Sbjct: 522 RLVDFAPLYCDESGSGLVTQFDKNDVEEAGLVKFDFLGLRTLTIIDWAVKMIDAQRTKLG 581 Query: 596 ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D+S IP DD +T+ LL T +FQLES GM+ + ++PD +E++IALV+L+RP Sbjct: 582 DPPLDISAIPLDDAKTFALLKRAETTAVFQLESRGMKDLITRLKPDTLEEMIALVALFRP 641 Query: 653 GPIDNIVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + NRK+G+ ++ H + P+L+ T GVI+YQEQVMQIAQ L+GY Sbjct: 642 GPLQSGMVDDFINRKHGRAQVAYPDAKYQHECLQPILEPTYGVIVYQEQVMQIAQELAGY 701 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL AD+LRRAMGKK EEM KQ+ F GA+ GI +A+ IF+L+ KFA YGFNKSH Sbjct: 702 SLGGADLLRRAMGKKKPEEMAKQRSTFQDGAASKGIDPELAIKIFDLVEKFAGYGFNKSH 761 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++SYQTAW+K H+P F+AA+M+ +MD +K+ F ++ R + ++PP VN Sbjct: 762 SAAYALVSYQTAWLKAHFPAHFMAATMSSDMDKTDKVVTFIEECRNMKLNLLPPDVNRGE 821 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883 F V DN + Y L AIKG+G I+ A D F L DFC+RVDSKK+N+R LE Sbjct: 822 FQFTVDDDNNVIYGLGAIKGLGEGPVEAIIAARKDGGDFKDLFDFCARVDSKKINKRALE 881 Query: 884 SLVFAGALDCFG------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEK 931 +LV +GALD G Y R + ++ K A+ N ++F A E+ Sbjct: 882 ALVRSGALDNLGPGIDVDYDRAVMAAAVPEAVKAAEQSAANANAGMSDLFGEVVPVASER 941 Query: 932 G-TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 G +S+ + ++S++ R E+ LG Y +GHP+D Y L+ + + + Sbjct: 942 GDAYSEFTHVRRWSLKE---RLNGERDTLGLYLTGHPIDEYDEELKHL----VSNRIVNL 994 Query: 991 RGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + ++A +VV+ + KT++G ++ +VT + E F Sbjct: 995 KPDRAKQKVAGLVVAFRVMKTKRGDKMAFVTLDDRTGRLETAVF 1038 >gi|188992333|ref|YP_001904343.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. campestris str. B100] gi|167734093|emb|CAP52299.1| DNA polymerase III alpha subunit [Xanthomonas campestris pv. campestris] Length = 1219 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1009 (40%), Positives = 605/1009 (59%), Gaps = 64/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 28 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNLFALV 87 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 88 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 135 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 136 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFAEGRADLAEQQLADWQ 193 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G +R+ + + A LP+VA+N+ FL D+ AH+ + Sbjct: 194 RVFGDGLHLELTRTGREGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFAAHEARVC 252 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D YLK+ EM ++F+D+P+A++NT+ +A+RC+ +++ L Sbjct: 253 ISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGTYFL 312 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I +M Sbjct: 313 PAYPVPEDETL----DSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 368 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 369 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 428 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y V Sbjct: 429 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 488 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADP----------SVDRLLEISQKLEGLY 522 D + KLIPN ++L+ + + ++ +A P V L++++++LE L Sbjct: 489 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPELIQRYQVEDDVRDLMDLARQLEDLT 544 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRD----VRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PLS+ P++ + R PVTQF+ +E+ GL+KFDFLGL+T Sbjct: 545 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 604 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632 LT++ ++ + R + VD++ IP DD TY + G G +FQ ESSGMR+ L Sbjct: 605 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLL 664 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I +N RK+G++ I+ P + +LK+T G+++YQ Sbjct: 665 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQ 724 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L Sbjct: 725 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDL 784 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 785 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 844 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870 + ++PP VN F+ + I Y L AIKGVG I+E + P+ +L DFC+ Sbjct: 845 GLTVLPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCT 904 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 905 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 964 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + ++ L + E+ LGFY SGHP D ++ +R++ Sbjct: 965 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVREL 1013 >gi|304312463|ref|YP_003812061.1| DNA polymerase III alpha subunit [gamma proteobacterium HdN1] gi|301798196|emb|CBL46418.1| DNA polymerase III alpha subunit [gamma proteobacterium HdN1] Length = 1173 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1043 (40%), Positives = 620/1043 (59%), Gaps = 36/1043 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P+FVHL++H+ YSL++G + + +++K A PA+A+TD + L+ ++F + AG+ Sbjct: 19 APTFVHLRLHTEYSLVDGLVRVKKLVEKAAELGMPAVAVTDYSGLYGLVKFQKYGLPAGV 78 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G ++ + N P++ I LL +GY+ + +LVS +L Q Sbjct: 79 KPIYGA--------DIWLANLDVEGSPSL--ITLLAMDVQGYRNITKLVSEAFLTGQRNG 128 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + L + +G+I L+GG G + +A AE+ L+ DR Y+ +Q Sbjct: 129 KAIVSRELLHQF-ADGIICLSGGRQGELGQALLQERPDRAEQIAREMAALYPDRFYLEVQ 187 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDR 245 R R D V LA LP+VATN+ FL DYEAH+V + + A T+ + Sbjct: 188 RTERAGDETYLHLAVALADRFALPVVATNDVRFLKRSDYEAHEVRVCINAGWTLDDPRRE 247 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + YLK+ EMV++F+DLPEALENTVEIA+RC+ + + LP + E I Sbjct: 248 MNYSDQQYLKSPQEMVALFADLPEALENTVEIAKRCNVEIPLGTYFLPDYPVPEGMTI-- 305 Query: 306 EEENELRNKAVAGLEVRLA-QGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361 ++ L ++A GL RLA I + A+ Y +RL EL+ I +M F GYFLIVA Sbjct: 306 --DSYLVHQAEEGLNARLAFLYDITRPDFAEIRARYDERLRIELDCIIKMGFPGYFLIVA 363 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQWAK N +PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 364 DFIQWAKNNGVPVGPGRGSGAGSLVAYAIKITDLDPLEYDLLFERFLNPERISMPDFDVD 423 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RD VI YV KYG + V+QIITFGS+ AKA +RDVGR Y VDR+ KLIP Sbjct: 424 FCMEGRDRVIDYVAEKYGRDAVSQIITFGSMAAKAVVRDVGRVQGKSYGFVDRIAKLIPF 483 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A+ + + +E AD V LL+++ KLEG+ R HA G+VI L+ Sbjct: 484 ELGMTLE-KAMEQEPQLKELYNADEEVHDLLDMALKLEGICRGVGKHAGGVVIAPSALTN 542 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596 VP+Y D VTQ++ +E+AGL+KFDFLGL+TLT++ +L + R V Sbjct: 543 YVPLYCDETGHNLVTQYDKDDVEQAGLVKFDFLGLRTLTIIDWALGIINPRLQRKGEAAV 602 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ I DD T+ LL + T +FQLES GM+ ++ ++P EDIIALV+L+RPGP+ Sbjct: 603 DIARIRLDDPATFRLLQSAETTAVFQLESRGMKDLIKRLKPSVFEDIIALVALFRPGPLG 662 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V + RK+GK+ + HP + P+L T G I+YQEQVM I Q+L+GYSL AD+LR Sbjct: 663 SGMVDDFIARKHGKQAVTYPHPDLKPVLDTTYGTILYQEQVMLIPQVLAGYSLGGADILR 722 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK +EM KQ+ F G +KN I + +A IF+ + +FA YGFNKSH+AAYA++SY Sbjct: 723 RAMGKKKADEMAKQRSIFTDGCAKNQIDEKLAGEIFDTMEEFAKYGFNKSHSAAYALVSY 782 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833 QTAW+K HYP F++A ++ +M N +KI F + R+ +QI+ P VNT F V D N Sbjct: 783 QTAWLKAHYPAGFMSAVLSADMHNTDKIVIFIDECRRMGLQIVSPHVNTSAYKFDVNDAN 842 Query: 834 RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKG+G I+EA A PF L +FC RVD KKLNRRVLE+L+ +GA+D Sbjct: 843 HIVYGLGAIKGLGAGPIEAIIEARDAGAPFTDLFEFCRRVDMKKLNRRVLEALIRSGAMD 902 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSVENSSV 950 G R +L SLD K A ++ ++F G F+ ++ K + + + Sbjct: 903 GMGPDRAIMLASLDEAAKAAGQAAESADAGMMDLFGELGGAEEFTPAWSVAKPASPDELL 962 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + E+ LG Y +GHP+D ++ L + K + + R +A +V++ + K Sbjct: 963 --QGEKDTLGLYLTGHPIDQFEEELSHFISSKICDVKPSQSRDQKSIIAGLVIAVRTMKN 1020 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 ++G R+G++T + + E + F Sbjct: 1021 KRGDRMGFLTLDDKSGRMEVSLF 1043 >gi|296136875|ref|YP_003644117.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12] gi|295796997|gb|ADG31787.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12] Length = 1146 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/983 (42%), Positives = 587/983 (59%), Gaps = 31/983 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +VHL+ H+ YS+++GAL +++++ D Q A+AITD NNLF+ + F + A AG++PI Sbjct: 3 YVHLRTHTEYSIVDGALRVDDMVPAAVRDGQGALAITDFNNLFATVRFYKAALDAGVKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + + + P ++LLV GY L +L+SR +L +Q + Sbjct: 63 IGCDV---------LLGSARHP-GQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRAV 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188 + WL+ EGLI L+G G I +A + A +F R Y LQR Sbjct: 113 VQWEWLEGGLAEGLIALSGAHEGAIGQALLQGDTATARDLTRQHAAVFEGRFYFELQRGG 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 H + + ++ V LA LP+VAT+ FL +D++AH+ + +A + R R Sbjct: 173 HAACEPHVQA-AVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRK 231 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T Y K+++EM ++F+D+P AL NTV IA+RC+ +L + P LP F E K Sbjct: 232 FTAQQYFKSQAEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPEGLTPAKF- 290 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 R +A GLE RLA A + Y+QRL++EL +IA+M F GYFLIVADFI Sbjct: 291 ---FRQQAQEGLEQRLAVLYPQADEREAARPRYQQRLEYELGIIAKMGFEGYFLIVADFI 347 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK N PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 348 NWAKNNGCPVGPGRGSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFCQ 407 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + RD VI YV+ KYG E V+QI TFG++ A+AA+RDVGR L + Y+ D + KLIP P Sbjct: 408 ENRDRVIDYVKEKYGVEAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKPG 467 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +++ A+ + + + V +LL+++Q+LEGL R+ HA G++I L+ Sbjct: 468 QHITIADALKQEPLLAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDFC 527 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSL-- 600 P+Y S V+QF+ +E AGL+KFDFLGL TLT+L+ + + + D L Sbjct: 528 PLYAQPGSTDAVSQFDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLED 587 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD ++Y L+ T+ +FQLES GM+ L +PD EDIIALV+LYRPGP+D I Sbjct: 588 IPLDDPKSYKLMAKGDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIPT 647 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y RK GKE +V P + +L+ET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMGKK Sbjct: 648 YCARKAGKEDVVYPDPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGKK 707 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM + + F GA+KNGI A IF+L+ KFA YGFNKSHAAAYA+++ QTAWMK Sbjct: 708 KPEEMAQHRGIFAEGAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWMK 767 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSL 839 HYP EFLAA+M++ +D+ +K+K +DA+ I ++PP VN F D++ I Y+L Sbjct: 768 AHYPAEFLAANMSIALDDTDKLKILVEDAQARGINVLPPDVNASQWRFDPVDSKTIRYAL 827 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIKG G ++ A ++PF SL DF RVD +LN+RVLE+L AGA D R Sbjct: 828 GAIKGNGQAAVEAMIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPERA 887 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKG----TFSDKITLEKFSVENSSVRFEN 954 ++ +++ YA E R ++FA + + + L + + + Sbjct: 888 AVMAAVETAMDYATQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLSF 947 Query: 955 EQRVLGFYFSGHPLDVYKPILRK 977 E+ +G+Y SGH D +R+ Sbjct: 948 EKTAIGYYLSGHLFDASAEEVRR 970 >gi|118594636|ref|ZP_01551983.1| DNA polymerase III, alpha subunit [Methylophilales bacterium HTCC2181] gi|118440414|gb|EAV47041.1| DNA polymerase III, alpha subunit [Methylophilales bacterium HTCC2181] Length = 1154 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1033 (40%), Positives = 620/1033 (60%), Gaps = 46/1033 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSF+HL+ HS YS+ +G + + + K PA+ +TD +NLF A++F + A +GI+ Sbjct: 7 PSFIHLRCHSEYSITDGIVRIPEYIKKAVDTGMPALGLTDLSNLFGAVKFYKAATQSGIK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PI+GC + I+ + N P P + L +GY L EL+S+ +L +Q + Sbjct: 67 PILGCDVWIENETN-----------PDQPYRMALFCQNQQGYIHLSELLSKAFLTNQSRG 115 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + SW+ +GLI L+G G I N A++ L ++ +FGDR Y+ +Q Sbjct: 116 KAILKKSWVLN-AHDGLIALSGALKGNIGYLLDQNKIDEAQEELSAWRAIFGDRFYLEIQ 174 Query: 188 RHRGYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 R+ G D ++ Q + LA +++PLVAT+ F+ +D+ AH+ +A V++ Sbjct: 175 RY-GSDARKKKQEEYIQKAIFLAVNNQVPLVATHPIQFMHTDDFRAHESKTCIADGYVLA 233 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + RP+ TP+ Y K EM+ +F D+P A NTV IA+RC+F Q+ LP F Sbjct: 234 DQRRPKDFTPEQYFKTPEEMLELFHDIPSATHNTVTIAKRCNFQFQLGEIFLPDFPIPNG 293 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I E+ L +A GL+ RL I + Y RL+FE+ VI M ++GYF Sbjct: 294 TKI----EDYLLIEAKKGLDQRLEDLYIDLKEREDQIPKYLDRLNFEVKVINEMGYAGYF 349 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI W+K N+IPVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPDR+SMPD Sbjct: 350 LIVADFINWSKSNHIPVGPGRGSGAGSVVAYSLGITDLDPLAYNLLFERFLNPDRVSMPD 409 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA LRDVGR L +PY+ VD + K Sbjct: 410 FDIDFCQEGRDRVIDYVKQKYGSDSVSQIATFGTMAAKAVLRDVGRVLDLPYNFVDTIAK 469 Query: 478 LIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 L+P + ++L+ AI + + ++ + V L +++ +LEGL R+ S HA G++I Sbjct: 470 LVPLELG--ITLKDAIEKEPQIKDRIKKEEEVKELFDLALRLEGLVRNVSMHAGGVLIAP 527 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----FLAQR 592 +S P+Y ++ V+QF+ +E GL+KFDFLGL+TLT++ +L+ +Q+ Sbjct: 528 TKISAFSPIYCQPGAEGIVSQFDKDDVEAVGLVKFDFLGLRTLTIVAMALENANHIRSQK 587 Query: 593 GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G + L IP DD T+ LL T +FQLES GM+ L+ +PDC EDIIALV+LYR Sbjct: 588 GEDPLQLESIPIDDKPTFDLLKASNTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYR 647 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D I + RK+G++++ HP + +LKET G+ +YQEQVMQIAQ+++GY+L AD Sbjct: 648 PGPMDLIPDFCKRKHGQQQVKYPHPATESILKETYGIAVYQEQVMQIAQVVAGYTLGGAD 707 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEMD Q+ F+ GA K+ +++ A ++F+LL KFA YGFNKSHAAAYA+ Sbjct: 708 LLRRAMGKKKIEEMDAQRATFVEGALKHELNQRQATDLFDLLEKFAGYGFNKSHAAAYAM 767 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KV 830 I+YQT ++K HYP F+AASM+ +M+N + + D NI ++PP++N F V Sbjct: 768 IAYQTGYLKAHYPSAFIAASMSADMNNTDNVHMLFDDCVLNNITLLPPNINKSEYKFVPV 827 Query: 831 GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I Y L A+KG G + I+ E +A+ PF SL DF +R+D +K+NR+ ESL+ +G Sbjct: 828 DHESILYGLGAVKGTGLSAIDIIIDERNANGPFTSLFDFAARLDLRKVNRKAFESLIRSG 887 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D +R LL S++ A+ + N H+ A + + ++ L + + Sbjct: 888 AFDEIEPNRATLLASVNLAITKAE-----QANAHQGQNALFEEFETTEVPLVEVGLWEER 942 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + E+ LGFYFSGHP Y+ ++R+ E T R +A ++ + + T Sbjct: 943 KQLAEEKIALGFYFSGHPFKFYEKMIRQFVPNKLSE--LTPRDATYLIAGIISTIHMRMT 1000 Query: 1010 RKGSRIGWVTFSE 1022 +G +I VT + Sbjct: 1001 SRG-KIAIVTLDD 1012 >gi|124514840|gb|EAY56352.1| DNA polymerase III, alpha subunit [Leptospirillum rubarum] Length = 1201 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1053 (40%), Positives = 618/1053 (58%), Gaps = 37/1053 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VH+ YSLL+GA ++ ++ K A+ PAIA+TD NLF A+EF Q A Sbjct: 1 MSSTDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKK 60 Query: 65 AGIQPIIGCQLDI------DMQD---NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 G++PIIGC++ I D QD +Q K ++LL GY+ L+++ Sbjct: 61 HGVKPIIGCEVYITPRSRFDRQDLYFGGDGPHQAKKINNASFHLILLAENDTGYRNLLKI 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 VS +L + RI L L EGLI L+G G I + A F+ Sbjct: 121 VSLSHL-EGFYYRPRIDLELLSR-HHEGLIALSGCLKGQISYMLTRGDTDRAYATAGLFR 178 Query: 176 KLFGDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FG Y + G + R +++ L+ +PLVATN+ +L ED HD+L+ Sbjct: 179 EIFGPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLC 238 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + + R R D YLK EMV F +LPEA+ENT+ IA R + + + Sbjct: 239 LQTGKTLEDPARLRFGSDEFYLKTPREMVRSFEELPEAIENTLRIADRIDVSIDLQTTHM 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--------YRQRLDFE 344 P + + +EN+ + V L VR ++ + + Y +RL+ E Sbjct: 299 PSY---------RLDENQGQTTTVPELFVRTSREGLDARFQENTFSDTEKALYLERLERE 349 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 + VI +M + GYFLIV DFI+ A++ IPVGPGRGS AGSV A++L IT+IDP+RF LLF Sbjct: 350 IQVIQKMGYEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLF 409 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+S+PD D+DFC +RR EVI+YV ++YG +RVA I TFG++ AK ++RDVGR Sbjct: 410 ERFLNPERVSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRV 469 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L M Y++VDR+ K+IPN + +A+ ++ R DP ++ L +S+KLEG+ RH Sbjct: 470 LGMTYAEVDRVAKMIPNSLDMTLE-KALEENPDLRALLEKDPRMEELFSLSRKLEGITRH 528 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 +S HAAG+VI PL + VP+ R ++ VTQF +EK GL+KFDFLGL TLTL+Q Sbjct: 529 SSIHAAGVVISREPLLEHVPLMRGANGEI-VTQFTKDDVEKVGLVKFDFLGLTTLTLIQG 587 Query: 585 SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 + + + IP DD TY LL+ TLGIFQLES GM + MQP+ ED+I Sbjct: 588 AENRIQAHTPDFSADRIPLDDARTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLI 647 Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 AL++LYRPGPI++ +V + RK +I P ++P+L+ET GVI+YQEQVMQIA +L Sbjct: 648 ALLALYRPGPINSGMVDDFIKRKKNPREIRYELPELEPVLRETYGVIVYQEQVMQIANVL 707 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +G+SL EAD+LRRAMGKK EEM K +++F+ GA + G K A ++FEL+A FA YGFN Sbjct: 708 AGFSLGEADLLRRAMGKKKPEEMAKMQDKFVDGAIRKGFPKEKATHVFELMAYFAGYGFN 767 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSH+AAYA+ISYQTA++K HYP+E AA +T +D+ EKI F A+ I+++ P +N Sbjct: 768 KSHSAAYALISYQTAYLKAHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDIN 827 Query: 823 TPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRR 880 DF + +RI + L A+K VG I+EA A D PF DF R+ KK+NRR Sbjct: 828 QSEFDFAILPGSRILFGLGAVKNVGKQAVDCILEARANDGPFVDFPDFLKRIVGKKVNRR 887 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 V+E+L+ AGA G R ++SLD++ +A+ + + + +++F+ ++G S L Sbjct: 888 VIEALIRAGAFRSLGIRRSVAMESLDDLLAWAEKQKSGKGSLQKSLFSEDQGGRSSGPPL 947 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + + + E+ LGFY + HP+ Y +L K+ + + G +R+ A+ Sbjct: 948 REVPEWDERMLLREEKNALGFYLTSHPMARYADLLLKLDTRSTRSLESVSEGETVRVFAV 1007 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V + ++ KT+KG ++ +T + EA FP Sbjct: 1008 VSALREVKTKKGDKMAQLTLLDMEGTIEAVLFP 1040 >gi|317485419|ref|ZP_07944298.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] gi|316923378|gb|EFV44585.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] Length = 1175 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1047 (40%), Positives = 625/1047 (59%), Gaps = 40/1047 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+GA+ LN++ + PA AITD NL+ A F + GI+P+ Sbjct: 4 FVHLHCHTEYSLLDGAIRLNDLCARAKDFGMPAAAITDHGNLYGAAYFYTTCKSYGIKPV 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTV-PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IGC++ + K + F V ++LL EGY L+ LVS+ +L D Sbjct: 64 IGCEVYV-----TKDHRDKDSEFSRVRHHLILLAKNNEGYHNLVRLVSKGFL-DGFHYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV--------AEKRLLTFKKLFGDR 181 R+ + L++ +EGLI L+ +G I R + + A ++ + ++ R Sbjct: 118 RVDKALLRQ-HSEGLIALSACLAGEIPRTLMGANKLITNGGTFDDAIRQTQEYMDIYDGR 176 Query: 182 LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ +Q + D+ +++++LA ++PLVATN+ +L+ +D EAHDVL+ + V Sbjct: 177 FYLEVQANTLPDQATLNNKLLELAEHTKVPLVATNDCHYLNADDVEAHDVLLCIQTQAKV 236 Query: 241 SQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + R R D Y K+ EM F +PEAL NTV IA C + P + E Sbjct: 237 NDAKRMRFEARDLYYKSAEEMEQAFKHIPEALSNTVRIAEECHVEMDFTHHYFPVYELPE 296 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E + A GL+ RL + Y RL+ EL VI M F GYFLI Sbjct: 297 GMTLS----TEFQRLAREGLKQRLELHPDRDTIDPKIYWDRLEMELKVICEMGFPGYFLI 352 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI WAK N+IPVGPGRGS AGS+ A+AL IT++DPL ++L+FERFLN +R+S+PD D Sbjct: 353 VQDFINWAKGNDIPVGPGRGSAAGSIVAWALRITNLDPLPYNLIFERFLNIERVSLPDID 412 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC+D+R VI+YV KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KLI Sbjct: 413 VDFCEDKRTRVIQYVSQKYGIDSVSQITTFGKMKAKAVVRDVGRALDMSFKETDRIAKLI 472 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+D + +A+ + D + +L++IS +LEGL RHASTHAAG+V+ D+P+ Sbjct: 473 PDDLKMTIK-KALDAEPELATLYKEDQIIRKLIDISMRLEGLSRHASTHAAGVVVSDKPM 531 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DL 598 + +P+YR + +L VTQF+MK +EK GL+KFDFLGL+T+TL+ +L + ++G K +L Sbjct: 532 DEYLPIYRGKKGEL-VTQFDMKMVEKVGLVKFDFLGLRTMTLIDNTLKAIEEQGKKAPNL 590 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 ++P D +TY + + T G+FQ+ESSGMRQ L ++P+C EDIIA+++LYRPGP+ + Sbjct: 591 DILPLTDPDTYDVFSRGDTDGVFQVESSGMRQYLRMLRPNCFEDIIAMLALYRPGPLGSG 650 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +V + RK+G+ + P ++ LK+T GVI+YQEQVMQIAQ+++GY+L AD+LRRA Sbjct: 651 MVDEFIKRKHGEVDVTYPLPSLEGCLKDTYGVIVYQEQVMQIAQIVAGYTLGGADLLRRA 710 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK E M K++ F+ GA KNG SK A IF+L+ KFA+YGFNKSH+AAYA+ISY T Sbjct: 711 MGKKNAEAMAKERTLFVDGAVKNGTSKEKATEIFDLMEKFAEYGFNKSHSAAYALISYHT 770 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++KTH+ VEF+AA +T E+ N +KI K+ + +I++ P V +F V D + Sbjct: 771 AYLKTHHKVEFMAALLTSEIGNQDKILKYIAACKDNDIEVRQPDVQVSRREFIVRDEAVV 830 Query: 837 YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L IK VG R I+ A D PF S D C RV +K+ +RVLESL+ GALDCFG Sbjct: 831 YGLGGIKNVGDEAIREIVAAREKDGPFLSFLDLCIRVSLRKVTKRVLESLIKGGALDCFG 890 Query: 896 YSRMQLLQSLDNIQKYAQ-WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV---- 950 SR ++ ++D + AQ +++ ++N+ + K ++ + FS E S+ Sbjct: 891 CSRAAMVAAIDPVVARAQKKIKEKQSNQISLLTLSPKKIEENQASGIGFSCEEESISEWD 950 Query: 951 -----RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 RFE E LGF+ + HPL Y+ L ++ ++ E+ I+ A +V S + Sbjct: 951 EDQKLRFEKE--ALGFFLTSHPLQPYRHELNRLDLRPLEDCREMADKATIKCAVLVTSIR 1008 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++G+R+ +V + E FF Sbjct: 1009 EILNKRGNRMAFVAVEDLTASGEVTFF 1035 >gi|221133300|ref|ZP_03559605.1| DNA polymerase III subunit alpha [Glaciecola sp. HTCC2999] Length = 1138 Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1030 (40%), Positives = 602/1030 (58%), Gaps = 38/1030 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + +LD+ PA+A+TD N+ ++F +A GI+PIIG + Sbjct: 1 MMDGLNKVKPLLDECVNLSMPALALTDQMNMCGLVKFYSEAHNRGIKPIIGTDFWV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q T P + + LL + GY + L+S+ Y I +WL E Sbjct: 57 ------QDLTQSPNIFRLTLLATNNIGYNNITVLISKAYQRGHVNNRPVIDKAWLAE-HK 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-- 199 G+I+L+G + G + A N+ + A + + ++ F DR YV L R R E++ Sbjct: 110 AGIIILSGATRGDLGEALLKNNQKAAHQIVEFYQTHFPDRYYVELIRT---GRVNENEYI 166 Query: 200 --VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKN 256 V A + LP+VATN F++ E++ AH++ +++ + RP+ +P Y+++ Sbjct: 167 RAAVAFAEQYALPVVATNEVCFIASENFAAHEIRVSIHDGYTLEDSRRPKHYSPQQYMRS 226 Query: 257 RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316 EMV +F D+PEA+ NTVEIA+RC+ +Q+ LP F + E+ L + Sbjct: 227 AEEMVELFDDIPEAITNTVEIAKRCNVTVQLGTYFLPNFPTGDL-----STEDFLVKVSK 281 Query: 317 AGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373 GLE RL + + +Y +RLD EL VI +M F GYFLIV +FIQW+K N IP Sbjct: 282 EGLERRLLKLFPDETDRVEKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIP 341 Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433 VGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC DRRDEVI + Sbjct: 342 VGPGRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDH 401 Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493 V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP+DP ++ +A Sbjct: 402 VAQMYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPSDPGMTLA-KAFD 460 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 + R E AD V LL +++ LEG+ R+A HA G+VI ++ P+Y D Sbjct: 461 VEPRLGELENADDDVKELLTMARILEGVTRNAGKHAGGVVIAPTQITDFSPLYCDDEGRN 520 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612 PVTQF+ +E AGL+KFDFLGL+TLT++Q ++D + + G +VD++ IP +D ++ LL Sbjct: 521 PVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEMTGEEVDITQIPLEDPASFKLL 580 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEK 670 + +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ + +V N +RK+G+E Sbjct: 581 QRAESTAVFQLESRGMKDLINRLRPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 640 Query: 671 IVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 I H + +L+ T G+I+YQEQVMQIAQ ++GYSL AD+LRRAMGKK EEM Sbjct: 641 ISYPDANYQHECLQVILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEM 700 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +KQ+ F G+ N I +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP Sbjct: 701 EKQRSVFAEGSKNNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 760 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKG 844 F+AA M+ +MDN +KI + ++ I I PP +N+ F V +N+ I Y + AIKG Sbjct: 761 YFMAAVMSADMDNTDKIVTLADECQRMGITICPPDLNSGKYKFTVNENQEIVYGIGAIKG 820 Query: 845 VGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG I++A + F L DFC+++D KK+N+RVLE LV AGA+D G R ++ Sbjct: 821 VGEGPIEAIIQARNEHGVFSDLFDFCAKIDIKKVNKRVLEKLVLAGAMDNLGPHRAAIMA 880 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 SL + + A K + ++F + V + V + E+ LG Y Sbjct: 881 SLQDALEAASQHAKAESFGQGDMFGLLTDADDAEQAFANVPVWSEKVWLDGEKETLGLYL 940 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 +GHP++ Y L + T + N + +A +V+ + +KG R VT + Sbjct: 941 TGHPINRYLSELTHYTDSRINDLKPTGKENQVAIAGLVLGVRVMTNKKGRRWAIVTLDDK 1000 Query: 1024 AKEYEANFFP 1033 + + FP Sbjct: 1001 SGRIDVRLFP 1010 >gi|21230815|ref|NP_636732.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769186|ref|YP_243948.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. campestris str. 8004] gi|21112417|gb|AAM40656.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574518|gb|AAY49928.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris str. 8004] Length = 1196 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1009 (40%), Positives = 604/1009 (59%), Gaps = 64/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDVTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFAEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G +R+ + + A LP+VA+N+ FL D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGREGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFAAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D YLK+ EM ++F+D+P+A++NT+ +A+RC+ +++ L Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I +M Sbjct: 291 PAYPVPEDETL----DSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522 D + KLIPN ++L+ + + + +A P V L++++++LE L Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DTEMASPELIQRYQVEDDVRDLMDLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRD----VRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PLS+ P++ + R PVTQF+ +E+ GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632 LT++ ++ + R + VD++ IP DD TY + G G +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I +N RK+G++ I+ P + +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870 + ++PP VN F+ + I Y L AIKGVG I+E + P+ +L DFC+ Sbjct: 823 GLTVLPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + ++ L + E+ LGFY SGHP D ++ +R++ Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVREL 991 >gi|145630481|ref|ZP_01786261.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021] gi|144983871|gb|EDJ91313.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021] Length = 1159 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1057 (39%), Positives = 617/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E +G+I+L+GG+ G + + ++ E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENAAEIESAVAFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R + R Q ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 168 LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+ +++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ + + K+ ++F T D Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED-------- 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +VV+ + T+KG+R+G T + + + F Sbjct: 994 TVAGLVVASRIAMTKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|254282070|ref|ZP_04957038.1| DNA polymerase III, alpha subunit subfamily, putative [gamma proteobacterium NOR51-B] gi|219678273|gb|EED34622.1| DNA polymerase III, alpha subunit subfamily, putative [gamma proteobacterium NOR51-B] Length = 1142 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1016 (40%), Positives = 607/1016 (59%), Gaps = 42/1016 (4%) Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75 +H+ YSL++G + + ++ +AA + PA+AITD N + ++ + A +AGI+ I+G Sbjct: 1 MHTEYSLVDGLVKIKPLMSALAAAKMPAVAITDLTNFYGLIKAYKAAASAGIKLIVGADF 60 Query: 76 DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 + D+ + S+ LL GYQ L L++R + Q + +W Sbjct: 61 WVVDPDDPDRHH----------SLCLLAQDETGYQNLTTLITRAWRDGQHHGRASVQRAW 110 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--HRGYD 193 L + EGLI L+GG G + + + A + L+ +++ F DR Y+ LQR G + Sbjct: 111 LGD-HAEGLIALSGGRLGHVGQLLLLQHPEEARQALIDYQRDFPDRFYIELQRTGRPGEE 169 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDH 252 Y + V LA + P+VATN+ FL+ ++EAH+ + + + RPR + Sbjct: 170 DYIHAAVA-LAAELDCPVVATNDVRFLTPSEFEAHEARVCIGEGRTLDDPRRPRDYSEKQ 228 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 +L++ EM ++FSD+PEA+ENTVEIARRCS +++ P LP F E + E+ L Sbjct: 229 FLRSAEEMAALFSDIPEAIENTVEIARRCSVSIRLGEPFLPNFPVPE----EHSTESFLA 284 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + A GL VRL A+ A Y++RLDFEL +I M F GYFL+V DFI+WAK+ I Sbjct: 285 HLANEGLAVRLR--ALGNPDPAP-YQERLDFELKIINEMGFPGYFLVVMDFIRWAKQQGI 341 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP R+SMPDFD+DFC DRRDEVI Sbjct: 342 PVGPGRGSGAGSLVAYALEITDLDPLTYDLLFERFLNPQRVSMPDFDVDFCMDRRDEVID 401 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YV + YG E V+QIITFG++ AKA +RDV R P+ D++ KLIP + + +A+ Sbjct: 402 YVADMYGREAVSQIITFGTMAAKAVVRDVARVQDKPFGLADKMSKLIPFEVGMTLE-KAL 460 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 + ++ D + + +++ +LEG R+ HA G+VI L+ P+Y D Sbjct: 461 RQEDAIKDLLREDSAAQEIWDMAVQLEGATRNVGKHAGGVVIAPSRLTDFSPLYCDEEGG 520 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHE 607 VTQ++ +E+AGL+KFDFLGL+TLT++ ++ + +R K+D+S +P DD Sbjct: 521 GVVTQYDKNDVEEAGLVKFDFLGLRTLTIIDWAVRMIDERRAREGEAKLDISTLPLDDPA 580 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 + +L T +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + +V N +RK Sbjct: 581 VFKVLQQAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRK 640 Query: 666 NGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 +G+E++ HP++ P+L+ T G+I+YQEQVMQIAQ L+GY+L AD+LRRAMGKK Sbjct: 641 HGREQVSYPDAQYQHPVLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRAMGKK 700 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM KQ+ F GAS+ GI +A IF+L+ KFA YGFNKSH+AAYA++SYQTAW+K Sbjct: 701 KLEEMAKQRSVFAEGASRKGIDPDLATRIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLK 760 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSL 839 HYP EF+AA M+ E+DN +K+ + +Q I + PP N F V D I Y L Sbjct: 761 AHYPAEFMAAVMSSELDNTDKLITLRDECKQLGITVRPPDANEGEYAFSVNDRGEIIYGL 820 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIKG+G I+ A PF L +FC R D +K+NRR +E+L+ +GALD G R Sbjct: 821 GAIKGLGEGPVESILAARNAGPFVDLFEFCDRTDPRKVNRRAIEALINSGALDGLGVERW 880 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN-EQ 956 ++ ++++ + A+ N ++F G D + + SS R N E+ Sbjct: 881 IMMSAVEDALRAAEQAANNTAAGMGDLFGDVLAAGHRHDPYEHHRNARPWSSKRLLNGEK 940 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 +G + SGHP++ Y+ +RK + + A N+ +A ++VS + +T++G Sbjct: 941 ESIGSFLSGHPMEEYEAEVRKFASRRIRDLQAD---NSATVAGLIVSVRTIRTQRG 993 >gi|188585188|ref|YP_001916733.1| DNA polymerase III catalytic subunit, DnaE type [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349875|gb|ACB84145.1| DNA polymerase III catalytic subunit, DnaE type [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1134 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1037 (40%), Positives = 624/1037 (60%), Gaps = 40/1037 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS YSLL+G +N ++ K Q PA+A+TD ++ A+EF ++A AGI+PI Sbjct: 5 FVHLHTHSQYSLLDGKCRINELVQKAKEYQMPALALTDHGVMYGAVEFYKQAKEAGIKPI 64 Query: 71 IGCQLDI-----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 +GC++ + ++D +K +Q +VLL GY+ L++LVS + +G Sbjct: 65 LGCEVYVAPRGRTVKDPVKDKHQ--------YHLVLLAENQTGYKNLMKLVSLAF--KEG 114 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 L E +G+I L+ +G I +VA+ R K +FG + Y+ Sbjct: 115 FYYKPRVDYELLERYHDGIIALSACLAGEIPTLILQGQYEVAKNRADRLKSIFGQNNFYL 174 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H + + + ++Q++ ++ LVATN+ +L+ ++ HDVL+ + + + Sbjct: 175 ELQDHGLTEEQQVNTHLLQISRELDIGLVATNDIHYLTNQESSIHDVLLCIQTGKHLDDQ 234 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR + + + Y K+ EM +IF D P A+ENT+ IA RC L LP F E D Sbjct: 235 DRMKFPSNEFYFKDGDEMSNIFKDFPGAIENTLAIADRCQVELDFDTLHLPEFRVPEGYD 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E + LR GL R Q ++RL++EL+VI++M ++ YFLIV D Sbjct: 295 ----ENSYLRKLCQKGLLERYEQVTTK-------IQERLEYELDVISKMGYASYFLIVWD 343 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F+++A +NNI VGPGRGS AGS+ AY+L IT++DP+R+ LLFERFLNP+R++MPD DIDF Sbjct: 344 FVRFAHENNILVGPGRGSAAGSLVAYSLRITNVDPIRYGLLFERFLNPERVNMPDIDIDF 403 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + R+ VI+YV KYG++ VA IITFG++QA+AA+RDVGR + M Y VDR+ K+IP+D Sbjct: 404 CYENRERVIQYVVEKYGNDNVAHIITFGTMQARAAVRDVGRVMGMNYGDVDRVAKMIPHD 463 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A+ + F++ DP V L+ IS+ +EGL RHAS HAAGIVI PL++ Sbjct: 464 PGMTID-KALELNKDFKKLYDEDPQVRELINISKSIEGLPRHASIHAAGIVISKAPLTEY 522 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601 VP+ D VTQF M +E+ GL+K DFLGLKTLT++ ++++ + Q + VDL+ I Sbjct: 523 VPL--QCNDDQVVTQFPMGTLEELGLLKMDFLGLKTLTMMNRAVEIVNQTQAETVDLNKI 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +T+ L+ TLG+FQLESSGMR L ++P EDIIA +LYRPGP++ I + Sbjct: 581 PLDDEQTFRLIREGNTLGVFQLESSGMRGVLRDLKPTSFEDIIATSALYRPGPMEQIPTF 640 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K+G+ +I H + P+L+ET G+I+YQEQ+MQ+A ++G+SL EAD+LRRA+GKK Sbjct: 641 IESKHGQREISYPHEDLKPILEETYGIIVYQEQIMQVASTMAGFSLGEADLLRRAIGKKK 700 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K + +QKE+F+ G G K ++++L+ KFADYGFNKSH+AAYA I+YQ+A++K Sbjct: 701 KNILAEQKEKFVQGCINRGYGKETGEHVYDLIVKFADYGFNKSHSAAYAYIAYQSAYLKA 760 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLA 840 +YP +F+AA +T M++ +K+ + +AR+ I+I+PP VN VDF V D RI + LA Sbjct: 761 NYPTQFMAALLTNSMNDTDKLALYIDNAREMGIEILPPDVNESLVDFTAVSDFRIRFGLA 820 Query: 841 AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A+K VG I+ + F SL+DFCSR D + N++ +ESL+ GA D F ++R Sbjct: 821 AVKNVGRGAVEEIITRRRKEGGFTSLDDFCSRTDLRACNKKAIESLIKVGAFDAFEHNRK 880 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVR--FENEQ 956 Q+LQ LD K AQ +F GT +KI L+ VE ++ + E+ Sbjct: 881 QMLQVLDEAVKKAQAFTSGSVKGQVTMFEIVSDGT--NKIDLDYPDVEEFTLNELLQMEK 938 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 +LGF+ SGHPLD YK L + E G I++A + ++ T+KG ++ Sbjct: 939 ELLGFFVSGHPLDNYKEKLANIDTSSLAELNQIKEGFRIKVAGICQDVKEIITKKGEQMA 998 Query: 1017 WVTFSEPAKEYEANFFP 1033 + T + + E FP Sbjct: 999 FCTLEDQSGTVELVIFP 1015 >gi|114776907|ref|ZP_01451950.1| hypothetical protein SPV1_11846 [Mariprofundus ferrooxydans PV-1] gi|114552993|gb|EAU55424.1| hypothetical protein SPV1_11846 [Mariprofundus ferrooxydans PV-1] Length = 1169 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1022 (41%), Positives = 618/1022 (60%), Gaps = 37/1022 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VHS +SLL L + ++L K+A +QPA+A+TD NLF A+EF KA GI+PI Sbjct: 6 FAHLHVHSDFSLLGSTLKIGDLLHKVAELRQPAVALTDYGNLFGAIEFYSKAMRMGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ I +D+ K ++G P P +VLL G++ L++LVS YL D R Sbjct: 66 MGCEVFI-CEDHTKRISEGPRG-PRFPQLVLLARNNHGWKNLLKLVSISYL-DGFYYKPR 122 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189 + L E +GLI ++ G +G I++ + A K + ++ +F + ++ +QR Sbjct: 123 VGKPLLSE-HADGLIAISSGWNGEIEQHLQRGDIEGARKVAIAYRDMFHEGCFFIEIQRQ 181 Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G + + +++ ++LA+ ++PLVA+NN+ FL ED+EA + A+ + ++ Sbjct: 182 NGSGQEQINELLIELAHELDIPLVASNNAHFLEREDFEAFQAMQALQQNRTLNDDVSGHF 241 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 TP++YLK+ EM +F D+PEALENTV IA RC+ LQ LP D Q E+ Sbjct: 242 TPEYYLKSYEEMQELFEDIPEALENTVHIANRCNVDLQFGNYQLP--------DFQPPED 293 Query: 309 NEL----RNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 EL R +++ GL+ R AI G + Y RL FEL+VI M F GYFLIV+ Sbjct: 294 MELSAYMRQQSMEGLDDRWP--AILAGDPDAVRETYDARLAFELDVIENMGFPGYFLIVS 351 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK IPVGPGRGSGAGS+ AY L ITD+DP+++ LLFERFLNP+R+SMPDFDID Sbjct: 352 DFITWAKHQGIPVGPGRGSGAGSLVAYCLKITDLDPIKYGLLFERFLNPERVSMPDFDID 411 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RR+E IRYV +KYG ++VAQIITFGS++AKA +RDVGR L M ++V+ + KL+PN Sbjct: 412 FCMSRREEAIRYVTHKYGEDKVAQIITFGSMKAKAVIRDVGRVLPMELAKVNMIAKLVPN 471 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 D + +A+ D+ + + D V RL ++++LEG +R+A HAAG++IG R L Sbjct: 472 DLKMTLE-KALVDEPKLAKMVKEDVEVARLFALAKRLEGSHRNAGKHAAGVIIGRRELVD 530 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKV 596 P+++ + V Q++M +EK GLIKFDFLGLKTLT++ ++ + Q Sbjct: 531 TAPLFKVAGEEGKVVQWDMANVEKVGLIKFDFLGLKTLTVIDIAVKLVRQYESGDAAKHF 590 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP D T+ L+ T +FQ+ESSGMR L ++PDC EDIIALV+LYRPGP++ Sbjct: 591 DITTIPMHDEATFQLMQRGQTGAVFQVESSGMRDLLTRLKPDCFEDIIALVALYRPGPLE 650 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V + K+G++ I P + +L+ET GVI+YQEQVMQIAQLL+G+SL +AD+LR Sbjct: 651 SGMVDTFIECKHGRQAIEYPLPQLKTILQETNGVILYQEQVMQIAQLLAGFSLGQADMLR 710 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM +Q++ F++GA K + A ++F+L+ KFA YGFNKSH+AAYA+ISY Sbjct: 711 RAMGKKKAEEMAEQRKIFMAGAEKQKVDLDKAEHMFDLMEKFAGYGFNKSHSAAYALISY 770 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K HYP F+AA+M+ +M N +K+ D R I ++ P +N +F+ + Sbjct: 771 QTAFLKAHYPRAFMAATMSCDMGNTDKLALLVTDCRNMGIDVLQPHINESDWEFRPEGDC 830 Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L IKGVG R ++ E + F S ED R ++ LN+R+LE+++ AGAL Sbjct: 831 IRYGLGGIKGVGEAALRAVIDERKTNGEFTSFEDMIMRAPARTLNKRILEAMIRAGALQG 890 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVR 951 + L+ L + + K + +F + +D TL +S S Sbjct: 891 LIPHQRAALEGLGEVLENLSRKRKEFASNQSFLFTVAEPESADGGFPTLPAWSPGES--- 947 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + E+ VLGFY +GHPL+ + +G E G I + + S +Q + + Sbjct: 948 LQAEREVLGFYLTGHPLEAWLKRTTGLGDCNLSELKEREEGAEIVVPVGISSIRQYQGGR 1007 Query: 1012 GS 1013 G+ Sbjct: 1008 GT 1009 >gi|325929585|ref|ZP_08190699.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118] gi|325540095|gb|EGD11723.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118] Length = 1196 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1009 (40%), Positives = 602/1009 (59%), Gaps = 64/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFNEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G +R+ + + A LP+VA+N+ FL D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGREGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ L Sbjct: 231 ISSGRVLDDPKRPREYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I +M Sbjct: 291 PAYPVPEDETL----DSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522 D + KLIPN ++L+ + + ++ +A P V L++++++LE L Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PLS+ P++ D R PVTQF+ +E GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632 LT++ ++ + R + VD++ IP DD TY + G G +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+ Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + ++ L + E+ LGFY SGHP D ++ +R++ Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991 >gi|319775318|ref|YP_004137806.1| DNA polymerase III subunit alpha [Haemophilus influenzae F3047] gi|329122686|ref|ZP_08251264.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus aegyptius ATCC 11116] gi|317449909|emb|CBY86121.1| DNA polymerase III alpha subunit [Haemophilus influenzae F3047] gi|327472560|gb|EGF17990.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus aegyptius ATCC 11116] Length = 1159 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1057 (39%), Positives = 618/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYDEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E +G+I+L+GG+ G + + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R ++ R Q ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 168 LALSRTGRPNQERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+ +++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ + + K+ ++F T D Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED-------- 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +VV+ + T+KG+R+G T + + + F Sbjct: 994 TVAGLVVASRIAMTKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|21672514|ref|NP_660581.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008381|sp|Q8K9S3|DPO3A_BUCAP RecName: Full=DNA polymerase III subunit alpha gi|21623135|gb|AAM67792.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 1161 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1041 (39%), Positives = 632/1041 (60%), Gaps = 67/1041 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YS+++G +++ K A++ITD NNL+ A++F A G++PI Sbjct: 6 FVHLHVHSDYSIVDGLSKPEDLIKKSVNLGMKALSITDFNNLYGAIKFYNAAHKWGLKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG---KQ 127 IG + + + N+ + + LL + +GY+ LI L+SR Y +G ++ Sbjct: 66 IGVTVKFFSE---LIKNE-------LTELTLLATNQDGYKNLILLISRAY--KKGYFCEK 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 V I WL E+ GLI+L+GG G I + + + L ++K F Y+ L Sbjct: 114 YVTIEKKWLSELNN-GLILLSGGCQGEIGKTLLRGQTSLISDCLHFYEKYFSGFYYLELI 172 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDR 245 R +R + S V L+Y+ +P+VATN+ FL++ED++ H + +A+ + + K + Sbjct: 173 RTYRENEEKYLSLAVDLSYSQNIPVVATNDVCFLNKEDFKIHKIRIAINEGVRLKESKIQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +LK EM +FSD+PEA+ N+VEI++RC+ ++ LP+F ++ Sbjct: 233 NNYSKHQFLKTEKEMCFLFSDIPEAIINSVEISKRCNVFIKSGQYFLPQFNTRKISI--- 289 Query: 306 EEENELRNKAVAGLEVRLAQG--AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 EN L K+ GL+ RL + K + Y+ RLD EL +I +M F YFLIV +F Sbjct: 290 --ENYLIQKSNKGLKKRLESNFKKVDKEIFLK-YKNRLDTELGIINKMGFPSYFLIVMEF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK NNIPVGPGRGSGAGS+ AY L IT++DPL F LLFERFLNP+R+S+PDFDIDFC Sbjct: 347 IQWAKDNNIPVGPGRGSGAGSLVAYVLNITEVDPLFFDLLFERFLNPERISLPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V + YG E VAQIITFG++ AKA +RDVGR L PY ++ L KL+P DP Sbjct: 407 MEKRDRVIEHVVHTYGRESVAQIITFGTMTAKAVIRDVGRVLGYPYGFINNLSKLVPLDP 466 Query: 484 AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 ++L+ A + +S +D + L+++S+KLEG+ R+ HA G+VI ++ Sbjct: 467 G--ITLKDAFSKNSELYTLYKSDEDIQNLIDVSKKLEGVNRNVGKHAGGVVISPSKITDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVD 597 P+Y D + + PVTQF+ IE GL+KFDFLGL+TLT++ +++ + + + ++ Sbjct: 525 CPVYCDEKGNNPVTQFDKNDIEYVGLLKFDFLGLRTLTIINCAVNMINKNLLLSNKKTIN 584 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP ++ + + LL T GIFQLES GM+ ++ +QPDC EDIIAL++L+RPGP+ + Sbjct: 585 INSIPLNESKCFLLLKKCETTGIFQLESYGMKDLVKRLQPDCFEDIIALIALFRPGPLQS 644 Query: 658 IVVYN--NRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N NRK+G E+I H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L +A Sbjct: 645 GMVDNFINRKHGYEEISYPDHKWQHILLKPVLESTYGIILYQEQVMQIAQILAGYTLGKA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAM KK ++M +Q+ FI GA KNGI++ +A+ IF+LL KFA YGFNKSH+ AYA Sbjct: 705 DILRRAMSKKNIKDMAEQRSIFIEGAQKNGINRKLAIKIFDLLEKFAGYGFNKSHSVAYA 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+A++MT ++DN +KI ++ Q I+I+PP++N +F V Sbjct: 765 LVSYQTLWLKAHYPSEFMASAMTSDIDNTDKIVMLVNESIQMGIKIIPPNINLSKYEFYV 824 Query: 831 GDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I Y L A+KG+G +++ E + F L D C R D K+ R+VLE L+ + Sbjct: 825 DHTKNIVYGLGAVKGIGRNPILNLVQEREKNGLFSDLFDLCMRTDPNKITRKVLEKLIMS 884 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK------ 942 G+ DCF +R LL +++ K ++ K + + E++F G+F +++ + K Sbjct: 885 GSCDCFNKNRNYLLSLIEDAIKASKEHFKIKKFQQESLF----GSFKEELNILKKNNNLL 940 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--------GNN 994 S + + ENE +VLG Y +GHP+D Y L+ Y + +T Sbjct: 941 NSFSDEEKKLENEHKVLGLYLTGHPIDRYAEELK------YYLNNSTFSKLKLFNHTKKK 994 Query: 995 IRLAAMVVSKQQKKTRKGSRI 1015 I +A +VVS + K T+ +RI Sbjct: 995 IMVAGIVVSIKTKVTKNKNRI 1015 >gi|190573488|ref|YP_001971333.1| DNA polymerase III subunit alpha [Stenotrophomonas maltophilia K279a] gi|190011410|emb|CAQ45028.1| putative DNA polymerase III, alpha chain [Stenotrophomonas maltophilia K279a] Length = 1196 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1011 (41%), Positives = 607/1011 (60%), Gaps = 65/1011 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G ++ + +G+ P+ + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGA--------DVLIAEEGQDPW----RMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WL+ G L L G S R ++AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPDWLK-AGNANLFALAGRQS-LAGRLALDGKHELAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G + + + ++ A LP+VA+N+ FL+ D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGREGEETFNQFALMA-AGQRGLPVVASNDVRFLAPTDFSAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D YLK+ EM ++F+D+P+A++NT+ +A RC+ +++ L Sbjct: 231 ISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + + + + + R+ GLE RL + +A G +DY +RL+FELN I +M Sbjct: 291 PNYPVPDDETLDTWIQKMSRD----GLEERLEKNPLAPGKTREDYFERLEFELNTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L PY V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPS----------VDRLLEISQKLEGL 521 D + KLIPN + L+ A+ + +A P V L++++ +LE L Sbjct: 467 DGVSKLIPN--ILGIHLKDALGKGKEGPSSEMASPELIQRYETEDDVRDLIDLALQLEDL 524 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLK 577 R+A HA G+VIG PLS+ P+Y + + PVTQF+ +E+ GL+KFDFLGL+ Sbjct: 525 TRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFLGLR 584 Query: 578 TLTLLQKSLDFLAQR----GVK-VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQA 631 TLT++ ++ + +R G+ VD++ IP DD TY + G G +FQ ESSGMR+ Sbjct: 585 TLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGMRRL 644 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 L+ +PD ED+IALVSLYRPGP+D I +N RK+G+E+I+ P + +LK+T G+++Y Sbjct: 645 LKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMVY 704 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K+G+ + A IF+ Sbjct: 705 QEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADAIFD 764 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN +K+ F + R Sbjct: 765 LMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDEVRN 824 Query: 812 FNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869 + ++PP VN F+ V + I Y L AIKGVG ++E PF L DFC Sbjct: 825 LGLTVLPPKVNQSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVEERLKGGPFKDLLDFC 884 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +RV S KLNRR LE+++ GALD G +R L+ L + K + + R + ++F Sbjct: 885 TRVGSAKLNRRTLEAMINCGALDELGRNRASLMLQLPEVIKATDQMARERASGQNSLFGG 944 Query: 930 EKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + I L+ E + R E+ LGFY SGHP D ++ +R + Sbjct: 945 PDPS-ATTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDL 994 >gi|289670237|ref|ZP_06491312.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 1195 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1009 (40%), Positives = 604/1009 (59%), Gaps = 64/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFGEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G +R+ + + A LP+VA+N+ FL D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGRDGEERFNQF-ALNAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ L Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + + ++ +R+++ GL RL + +A G QDY RL+FEL+ I +M Sbjct: 291 PAYPVPEDETL----DSWIRSQSRDGLAARLEKSPLAPGKTRQDYVDRLEFELDTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K +IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQSIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522 D + KLIPN ++L+ + + ++ +A P V L++++++LE L Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PLS+ P++ D R PVTQF+ +E GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632 LT++ ++ + R + VD++ IP DD TY + G+ G +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGSTGAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+ Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGLGACEAIVEERQRGGPYTTLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLILQLPEVMKATEQMARERASGQNSLFGGP 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + ++ L + E+ LGFY SGHP D ++ +R++ Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991 >gi|325278077|ref|ZP_08143596.1| DNA polymerase III subunit alpha [Pseudomonas sp. TJI-51] gi|324096784|gb|EGB95111.1| DNA polymerase III subunit alpha [Pseudomonas sp. TJI-51] Length = 1174 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1066 (39%), Positives = 612/1066 (57%), Gaps = 62/1066 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+VHS +SL++G + + + +A PA+AITD +N+ S ++F + A AGI Sbjct: 2 SVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G L + G P + I LL +GY+ L EL+SR + Q Sbjct: 62 KPICGADLWL----------AGADPEAPLSRICLLAMNPKGYRNLTELISRGWTDGQRNG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 V + W+ +EGLI L+ G G I A A+ L + +F +R YV +Q Sbjct: 112 LVILQREWIAP-ASEGLIALSAGKEGDIGMALLAGRDDEAQALLQDWMGMFPERFYVEVQ 170 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R +R D V LA PLVATN+ F+ + D++AH+ + + + RP Sbjct: 171 RTNRARDEEYVHAAVALADRLGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRP 230 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I Sbjct: 231 RCYSDQQYLKSSEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360 ++ LR+ + GLE RLA Y Q Y RL FEL++I +M F GYFLIV Sbjct: 289 --DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+ Sbjct: 347 MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDV 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP Sbjct: 407 DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A + R+ D + +++ KLEG+ R HA G+VI L+ Sbjct: 467 FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + K Sbjct: 526 DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V++ IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ Sbjct: 586 VNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645 Query: 656 DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + NRK+G+ ++ H + P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 646 QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886 V D+ RI Y L AIKGVG I+EA A PF L DFC R+D K++N+R L++LV Sbjct: 826 TVNDDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALV 885 Query: 887 FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---- 927 +GALD G +R LL +L K A+ + H ++F Sbjct: 886 RSGALDRLGPHFHDEIKAYHAHIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGGMF 945 Query: 928 -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 A + +++ + + +++ R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 DAADVDVYANHRKVRELTLKE---RLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDL 1002 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + I A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1003 KPSRETQTI--AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|325916626|ref|ZP_08178889.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC 35937] gi|325537180|gb|EGD08913.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC 35937] Length = 1195 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1009 (40%), Positives = 602/1009 (59%), Gaps = 64/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFSEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G +R+ + + A LP+VA+N+ FL D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGREGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D YLK+ EM ++F+D+P+A++NT +A+RC+ +++ L Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTQALAQRCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + + ++ +R+++ GL RL + IA G +DY RL+FEL+ I +M Sbjct: 291 PAYPVPEDETL----DSWIRSQSREGLAARLEKSPIAPGKTRKDYVDRLEFELDTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522 D + KLIPN ++L+ + + ++ +A P V L++++++LE L Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PLS+ P++ D R PVTQF+ +E GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632 LT++ ++ + R + VD++ IP DD TY + G G +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+ Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + ++ L + E+ LGFY SGHP D ++ +R++ Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991 >gi|157964927|ref|YP_001499751.1| DNA polymerase III subunit alpha [Rickettsia massiliae MTU5] gi|157844703|gb|ABV85204.1| DNA polymerase III alpha chain [Rickettsia massiliae MTU5] Length = 1181 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1084 (39%), Positives = 632/1084 (58%), Gaps = 85/1084 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ +A++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASANKMPAICLADKGNLFGSLEFALYAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I K I+L+ GY+ L++L S + D K Sbjct: 63 PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKDDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + + + A +++ GDR Y + R Sbjct: 111 DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +++ E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYPDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM+ +FSDLP A++NTV + RC F + P+LP F K+ E Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDIS-----E 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + +R A GL RLA ++ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIRKDAKEGLLARLATKFKSENISLENQEELKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVSL QA+ + A + + +L+ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVLDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYAEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAA+Y Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-------- 822 V+SYQTA++K +YP EFL A + LE++N +KI F Q+A+ I+I P++N Sbjct: 765 VLSYQTAYLKANYPAEFLVACLNLELNNHDKINFFLQEAKDNGIKITAPNINISEGYFSV 824 Query: 823 --------------TPCVDFKVGD--------------NRIYYSLAAIKGVGTTTARHIM 854 P +D + + I ++L AIKGV + + Sbjct: 825 KFSDTVIPHSVRPVIPRLDRGIQEISKDTVVKPRYDIAGAIIFALGAIKGVTPNFGKLVT 884 Query: 855 -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA- 912 E A F S+ DF R+ K +N ++LE+L+ +G D +R+QLL S+ + YA Sbjct: 885 DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYAT 944 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + E+ +N+ I + + S I + + +++ F E +G + S HPL Y+ Sbjct: 945 SYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAF-YEFEAMGLFISNHPLTEYQ 1000 Query: 973 PILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYE 1028 I ++ I + + N + LA ++ Q+K +R +R +VT S+P +E Sbjct: 1001 EIFSRLNILNTADLHNNLPDGTNRVSLAGVI---QKKDSRMSARGRFVTLVLSDPENIFE 1057 Query: 1029 ANFF 1032 + F Sbjct: 1058 LSIF 1061 >gi|260583164|ref|ZP_05850944.1| DNA polymerase III subunit alpha [Haemophilus influenzae NT127] gi|260093782|gb|EEW77690.1| DNA polymerase III subunit alpha [Haemophilus influenzae NT127] Length = 1159 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1057 (39%), Positives = 616/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E +G+I+L+GG+ G + + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R + R Q ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 168 LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+ +++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQMLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ + + K+ ++F T D Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED-------- 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +VV+ + T+KG+R+G T + + + F Sbjct: 994 TVAGLVVASRIAMTKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|114567554|ref|YP_754708.1| DNA polymerase III DnaE [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338489|gb|ABI69337.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1130 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1035 (39%), Positives = 632/1035 (61%), Gaps = 35/1035 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL HS YSLL+GA + +++++ + PA+AITD L+ ++F ++A GI+P Sbjct: 4 SFVHLHNHSEYSLLDGACRIKDLVNRAVELEMPAVAITDHGVLYGVIDFYREARKRGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC+L + + L + + + LL GY+ L++LVSR +L +G Sbjct: 64 LIGCELYVAPRSRLDKEARIDD---NLYHLTLLCKNELGYRNLVQLVSRAFL--EGFYYK 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 L E EGLI L+G G I R + A ++ L +++LFG Y+ LQ Sbjct: 119 PRVDQELLEKYHEGLIALSGCVVGEIPRLLQNGDYRGAREKALYYQELFGSGNFYLELQD 178 Query: 189 HRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G + S +++L+ +PL A+N+ +L ++D + HDVL+ + +VV+ + R Sbjct: 179 H-GLQEEKASLPGLLRLSREDSIPLAASNDCHYLRKKDAQVHDVLLCIQTGSVVNDEKRL 237 Query: 247 RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDD 302 R + + Y+K+R EM ++F D PEALENT++IA C+ + H P+ + Sbjct: 238 RFSGSEFYMKSREEMAALFPDYPEALENTLKIAGECNLDFTFGEYHLPVFELPPGHSAES 297 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E +E + + ++ + RL++EL VI M F+ YFLIV D Sbjct: 298 FLSEMVHEKFRRKYPDAQEKIIE--------------RLEYELRVINEMGFAAYFLIVQD 343 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 + W+++N IPVGPGRGS AGS+ +Y L IT IDPLR+ LLFERFLNP+R+SMPD DIDF Sbjct: 344 LVNWSRQNGIPVGPGRGSAAGSLVSYVLDITTIDPLRYDLLFERFLNPERVSMPDIDIDF 403 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD VI Y+ +KYG +RVAQIITFG++ A+AA+RDVGRAL +PY QVDR+ K++P + Sbjct: 404 CFEKRDRVIDYIISKYGADRVAQIITFGTMAARAAIRDVGRALDVPYGQVDRIAKMVPAE 463 Query: 483 PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 VSL+ A+ A +D + +L+I+Q +EG+ RHAS HAAG+VIG + LS+ Sbjct: 464 LG--VSLERALEISPDLFTAYQSDYNTRNILDIAQAIEGMPRHASIHAAGVVIGRQSLSE 521 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 ++P+ + + +TQF + +E GL+K D LGL+TLT++ ++L+ + + R +D+S Sbjct: 522 ILPLQKTPEGHV-LTQFTKETVEDIGLLKMDILGLRTLTVIDRALEIIRKTRDEDIDISS 580 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD Y LL+ T G+FQLES G+R+ L M+PD EDIIA+++LYRPGP+ + +V Sbjct: 581 IPLDDEAVYKLLSAGDTAGVFQLESDGLRRLLCEMKPDRFEDIIAVIALYRPGPLGSGMV 640 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + NRKNG+++I I PL++ +LKET GVI+YQEQVM++A L+ +++ EADVLRRAMG Sbjct: 641 EDFINRKNGRQEIEYIDPLLEDILKETYGVILYQEQVMRVASELADFTMGEADVLRRAMG 700 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EE+ Q+++FI+GA++NGI A ++F+L+ FA YGFNKSH+AAYA+ISYQTA+ Sbjct: 701 KKKAEELMAQRDKFIAGAARNGIGLATASHLFDLMESFAGYGFNKSHSAAYALISYQTAY 760 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYPVE+L A ++ +DN +K+ + ++ R+ I+++PP +N +F V + I + Sbjct: 761 LKAHYPVEYLCAFLSSVIDNQDKVVSYIKECRRLGIKVLPPDINESYENFSVARDAIRFG 820 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L AIK VG ++I+EA + SL DFC RVD +LN+R+LE+L+ AG D G+SR Sbjct: 821 LGAIKNVGQNAVKNIVEARKQGFYTSLFDFCRRVDLGQLNKRMLENLILAGCFDSLGFSR 880 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L ++ + +++N ++ ++F E + I K E S R E+ V Sbjct: 881 KGALSIMEECVNISLAIKQNECSQQGSLFGDEMEMVEEPIIKLKGEYE-SRERLLKEKEV 939 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LGF+ S PLD ++ +L + E+ + +R+A +VV+ ++ +RKG Sbjct: 940 LGFFVSESPLDEFRSLLPLISTHCLEDINLWEEESYVRVAGIVVNLSRRVSRKGESYARF 999 Query: 1019 TFSEPAKEYEANFFP 1033 + E FP Sbjct: 1000 VLEDLGGRIEVLVFP 1014 >gi|148827930|ref|YP_001292683.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittGG] gi|148719172|gb|ABR00300.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittGG] Length = 1159 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1057 (39%), Positives = 617/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E +G+I+L+GG+ G + + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R + R Q ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 168 LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+ +++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ + + K+ ++F T D Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHED-------- 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +VV+ + T+KG+R+G T + + + F Sbjct: 994 TVAGLVVASRIAMTKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|167585898|ref|ZP_02378286.1| DNA polymerase III, alpha subunit [Burkholderia ubonensis Bu] Length = 1104 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1028 (40%), Positives = 616/1028 (59%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC + I D+ ++ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGCDVWIANPDDRDKPSR----------LLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL +GL+ L+G G I A + + A + + K+F Y+ LQR Sbjct: 114 AELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA +LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAATLAAELKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y + + +M ++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTDQYFRTQDDMAALFADLPSAVANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDAASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM + +E F +GA+KNG+S+ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAEHREIFAAGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945 D +R QLL S+ + A E N E+ AH L Sbjct: 889 DSLNANRAQLLASVPLAMEAADQAEANAMQAGLFDMGAESPHAH---------ALVDEPA 939 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + R + E+ LGFY SGH D Y+ +R+ + V ++ G + +A ++ S Sbjct: 940 WDDKRRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKVGELKEGRDKVVAGVIASL 995 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 996 RTQMTQRG 1003 >gi|289662892|ref|ZP_06484473.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1196 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1009 (40%), Positives = 602/1009 (59%), Gaps = 64/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFSEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G +R+ + + A LP+ A+N+ FL D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGRDGEERFNQF-ALNAAGVRGLPVAASNDVRFLYASDFNAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ L Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTYALAQRCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + + ++ +R+++ GL RL + +A G QDY RL+FEL+ I +M Sbjct: 291 PAYPVPEDETL----DSWIRSQSRDGLAARLEKSPLAPGKTRQDYVDRLEFELDTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522 D + KLIPN ++L+ + + ++ +A P V L++++++LE L Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PLS+ P++ D R PVTQF+ +E GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632 LT++ ++ + R + VD++ IP DD TY + G+ G +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITTIPLDDMPTYKGVFASGSTGAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+ Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + ++ L + E+ LGFY SGHP D ++ +R++ Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991 >gi|145632094|ref|ZP_01787829.1| DNA polymerase III subunit alpha [Haemophilus influenzae 3655] gi|144987001|gb|EDJ93531.1| DNA polymerase III subunit alpha [Haemophilus influenzae 3655] Length = 1159 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1057 (39%), Positives = 616/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K T G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSTLCGDEYF----YLTLLAKNNEGYKNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E EG+I+L+GG+ G + + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R + R Q ++LA LPLVATN+ +FL +D+EAH++ +A+ + Sbjct: 168 LALSRTGRPNEERYIQAALKLAERCNLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKYYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVTETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP +S +A + + + A +D V L+++++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLS-KAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAKYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ + + K+ ++F T D Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED-------- 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + T+KG+ +G T + + + F Sbjct: 994 TVAGLLVASRIAITKKGNSLGIATLDDRSGRLDLTLF 1030 >gi|298531048|ref|ZP_07018449.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298509071|gb|EFI32976.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 1156 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1038 (40%), Positives = 631/1038 (60%), Gaps = 38/1038 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL H+ YSLL+GA+ + ++ + PA AITD N+F +L F +A GI+PI Sbjct: 4 FTHLHCHTEYSLLDGAIRITDLCARAVDLGMPAAAITDHGNMFGSLNFYLEAKKYGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ + + N ++ +Q + +VLL EGY L+++V+R +L D R Sbjct: 64 IGCE--VYLAQNHQVKDQLRY------HLVLLAMDKEGYHNLVKIVTRGWL-DGFYYKPR 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L+ +G+I L+ G + + A + L + +F R Y+ ++ + Sbjct: 115 VDKDILK-AHNQGIICLSACLQGEVQHVLRRQGFKQARETALQYADIFPGRFYLEMEAN- 172 Query: 191 GYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G E Q+++++ +LP+VATN+ +L +D +AHD+L+ + ++ V R R Sbjct: 173 GIPEQMEVNDQLLEMSRETQLPVVATNDCHYLGPDDVQAHDILLCIQTNSKVQDSSRMRF 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D Y K+ EM FS P+ALEN EI +RC+ ++ PR+ + + Sbjct: 233 DTDQLYYKSVEEMEKEFSHCPQALENVQEIIKRCNLEIETDTFHFPRYTPSRENTL---- 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + E + + GL+ R + + + YR+RL+ EL +I M F GYFLIV DFI WA Sbjct: 289 DEEFISLSREGLQQRFQE--LPYSVDQKHYRERLEEELEIICSMGFPGYFLIVQDFINWA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K IPVGPGRGS AGS+ AYAL IT++DP+R++LLFERFLN +R SMPD D+DFC D+R Sbjct: 347 KSQGIPVGPGRGSAAGSLVAYALRITNLDPIRYNLLFERFLNKERASMPDIDVDFCYDQR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 ++VIRYV KYG + VAQI TFG+++A+A +RDVGRAL M S D++ KLIP + + Sbjct: 407 EKVIRYVAEKYGRDSVAQITTFGTMKARAVVRDVGRALGMKLSLTDKIAKLIPEELKMTI 466 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + R+ D V RL++I ++LEG+ RHASTHAAGIVI DR + + +P+YR Sbjct: 467 D-KAMQQEPDLRKMVDEDEDVARLMDICRRLEGMVRHASTHAAGIVISDRAMQEHLPLYR 525 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 + D VTQF+MK +EK GLIKFDFLGLKTLT+L+ +L ++ G + DL +P +D Sbjct: 526 G-KKDEVVTQFDMKRVEKVGLIKFDFLGLKTLTVLKDTLAMASRNGQETPDLDSLPLEDP 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 ET+ LL T G+FQLESSGMR L ++P C EDIIAL++LYRPGP+++ +V + R Sbjct: 585 ETFKLLGRGLTDGVFQLESSGMRNVLVDLKPTCFEDIIALLALYRPGPLESGMVTDFIKR 644 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G + HP ++P+LKET GVI+YQEQVM+IAQ+L+GYSL + D+LRRAMGKK Sbjct: 645 KHGLVPVEYPHPELEPVLKETYGVILYQEQVMKIAQVLAGYSLGDGDILRRAMGKKEASV 704 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M +Q+ +F+ GA ++G+ + A IF+L+ KFA YGFNKSH+AAYA+ISYQTA++K H+P Sbjct: 705 MARQRSKFLQGAKEHGVKQETAEYIFDLVEKFAGYGFNKSHSAAYALISYQTAYLKAHFP 764 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA +T E++N +K+ R I ++PP +N+ +F V +N++ + L+ IK Sbjct: 765 SEFMAALITSEVNNTDKVIAHVNACRDMEITVLPPCINSSLNEFSVENNQVRFGLSGIKN 824 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG + I+ E + PF++L DFC RV S+K +RVLE L+ +GA+D G SR LL Sbjct: 825 VGRSAIEAIIRERKKNGPFENLLDFCERVGSRKAGKRVLEMLIKSGAMDTLGCSRRALLD 884 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFA-------HEKGTFSD--KITLEKFSVENSSVRFEN 954 +D + AQ KN+ ++ + KG D + LE+F E+ ++ E Sbjct: 885 GMDMVAARAQRSAKNKVKGQLSMLSLLGEETCQVKGLGLDCPENELEEFQ-EDEKLKLEK 943 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E LGFY SGHPL ++ ++++ + +E + G + L ++V K++ ++KG + Sbjct: 944 E--ALGFYLSGHPLLPFRRDIQRLKLSTIQECLELRPGTQVELPVIIVGKKEHVSKKGDK 1001 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + + + E F Sbjct: 1002 MAFCQIEDLTGTAEVTIF 1019 >gi|21242159|ref|NP_641741.1| DNA polymerase III subunit alpha [Xanthomonas axonopodis pv. citri str. 306] gi|21107574|gb|AAM36277.1| DNA polymerase III alpha chain [Xanthomonas axonopodis pv. citri str. 306] Length = 1196 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1009 (40%), Positives = 601/1009 (59%), Gaps = 64/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFNEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G +R+ + + A LP+VA+N+ FL D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGRDGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ L Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + + + +R+++ GL RL + IA G QDY RL+FEL+ I +M Sbjct: 291 PAYPVPEDETL----DTWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522 D + KLIPN ++L+ + + ++ +A P V L++++++LE L Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PLS+ P++ D R PVTQF+ +E GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632 LT++ ++ + R + VD++ IP DD TY + G G +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+ Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + ++ L + E+ LGFY SGHP D ++ +R++ Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVREL 991 >gi|78047019|ref|YP_363194.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035449|emb|CAJ23094.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1196 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1009 (40%), Positives = 602/1009 (59%), Gaps = 64/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFNEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G +R+ + + A LP+VA+N+ FL D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGREGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ L Sbjct: 231 ISSGRVLDDPKRPREYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I +M Sbjct: 291 PAYPVPEDETL----DSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522 D + KLIPN ++L+ + + ++ +A P V L++++++LE L Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PLS+ P++ D R PVTQF+ +E GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632 LT++ ++ + R + VD++ IP DD TY + G G +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+ Sbjct: 823 GLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV + +LNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 883 RVGTARLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + ++ L + E+ LGFY SGHP D ++ +R++ Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991 >gi|311694160|gb|ADP97033.1| DNA polymerase III, alpha subunit [marine bacterium HP15] Length = 1145 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1037 (40%), Positives = 619/1037 (59%), Gaps = 47/1037 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + + ++ ++A PA+ +T+ +N+ S + F + A AG++PIIG L ++ D Sbjct: 1 MVDGLVRVKPLIKRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAGVKPIIGADLWLENPD 60 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + PF I LL +GY L E++S Y Q I WL E Sbjct: 61 ------EPENPF----RITLLARDNDGYLNLTEIISLGYTEGQRFGKPIIQRKWL-EARP 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 GLI L+G G + +A ++A +R + L+ D Y+ LQR R D Sbjct: 110 NGLIALSGSRMGDVGKALMAGKPELARERARYWMDLYPDSYYLELQRTGRPGDEDCLHLS 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSE 259 V+LA LP+VATN+ FL ED+EAH+ + + S + R R D YL++ E Sbjct: 170 VELAGALGLPVVATNDVHFLEAEDFEAHEARVCIGESRTLDDPRRDRRFSDQQYLRSADE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M+ +FSD+PEA+ENTVEIARRCS +++ LP + + + ++ R + GL Sbjct: 230 MIELFSDIPEAIENTVEIARRCSVKVRMGEYFLPNYPIPDGMTM----DDYFRKVSEEGL 285 Query: 320 EVRLAQGAIAKG---YHA--QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374 E RLA+ ++K Y A + Y +RL+FEL++I +M F GYFLIV DFI+WAK N +PV Sbjct: 286 EERLAK-TLSKDDPEYDAKREAYYKRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV 344 Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434 GPGRGSGAGS+ AYA ITD+DPL + LLFERFLNP+R+SMPDFD+DFC + RD VI Y Sbjct: 345 GPGRGSGAGSLVAYAQLITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIEYT 404 Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494 KYG E V+QIITFG++ AKA +RDV R Y D+L K+IP +P + +A+ Sbjct: 405 AQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFEPGMTLE-KALEQ 463 Query: 495 DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554 + + E D + E++ KLEG+ R+A HA G+VI ++ P+Y D Sbjct: 464 EPQLVEFLENDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDEGGSL 523 Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETY 609 VTQF+ +E AGL+KFDFLGL+TLT+++ +L+ + R K +D++ IP DD ++ Sbjct: 524 VTQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRREKKGMQPLDINEIPLDDVPSF 583 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667 +L T +FQLES GM+ + +QPD +ED+IALV+L+RPGP+ + +V + +RK+G Sbjct: 584 DMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRKHG 643 Query: 668 KEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 ++ + HP + P+L+ T GVI+YQEQVMQIAQ+++GY+L AD+LRRAMGKK Sbjct: 644 RQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGNADMLRRAMGKKKP 703 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEM KQK+ F+ G +NGI+ T+A NIF+L+ KFA YGFNKSH+AAYA++SYQT W+K H Sbjct: 704 EEMAKQKQFFLDGCEQNGINTTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 763 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAA 841 YP EF+AA +T +M N +K+ ++ R + ++ P V+ F V D +I Y L A Sbjct: 764 YPAEFMAAVLTADMQNTDKVVTLVEECRNMKLDLLVPDVSRSEYTFTVNDEGQIVYGLGA 823 Query: 842 IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IKG+G + I+E D +PF + DFC RVD KK+N+R +E+L+ +GA+D G SR Q Sbjct: 824 IKGLGEGPIQSIVEGRGDGEPFQDIFDFCRRVDLKKVNKRAMEALIRSGAMDKLGASRAQ 883 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKIT-LEKFSVENSSVRFENEQR 957 L+ S+D + A +N + ++F E G D + R + E+ Sbjct: 884 LMASIDKAVQQADQQSRNESVGMMDMFGEMLEAGDGGDPYEDVAGVREWPEKQRLKGEKD 943 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRI 1015 LG Y +GHP D Y+ +R+ S+A ++ N R+A +VV+++ KTR GS + Sbjct: 944 TLGLYLTGHPFDEYEKEVRRF----VRSSIADLKPNKSPQRVAGLVVAQRTMKTRTGSTM 999 Query: 1016 GWVTFSEPAKEYEANFF 1032 ++T + + EA F Sbjct: 1000 CFITLDDRSARIEATLF 1016 >gi|319897758|ref|YP_004135955.1| DNA polymerase iii alpha subunit [Haemophilus influenzae F3031] gi|317433264|emb|CBY81639.1| DNA polymerase III alpha subunit [Haemophilus influenzae F3031] Length = 1159 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1057 (39%), Positives = 617/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYDEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E +G+I+L+GG+ G + + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R + R Q ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 168 LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+ +++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ + + K+ ++F T D Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED-------- 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + T+KG+R+G T + + + F Sbjct: 994 TVAGLLVASRIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|16272681|ref|NP_438899.1| DNA polymerase III subunit alpha [Haemophilus influenzae Rd KW20] gi|260579831|ref|ZP_05847661.1| DNA-directed DNA polymerase subunit III alpha [Haemophilus influenzae RdAW] gi|1169392|sp|P43743|DPO3A_HAEIN RecName: Full=DNA polymerase III subunit alpha gi|1573746|gb|AAC22399.1| DNA polymerase III, alpha subunit (dnaE) [Haemophilus influenzae Rd KW20] gi|260093115|gb|EEW77048.1| DNA-directed DNA polymerase subunit III alpha [Haemophilus influenzae RdAW] Length = 1159 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1057 (39%), Positives = 616/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFIHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E +G+I+L+GG+ G + + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R + R Q ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 168 LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNTEDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+ +++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ + + K+ ++F T D Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED-------- 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +VV+ + T+KG+R+G T + + + F Sbjct: 994 TVAGLVVASRIAMTKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|312883823|ref|ZP_07743542.1| DNA polymerase III subunit alpha [Vibrio caribbenthicus ATCC BAA-2122] gi|309368572|gb|EFP96105.1| DNA polymerase III subunit alpha [Vibrio caribbenthicus ATCC BAA-2122] Length = 1143 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1033 (40%), Positives = 611/1033 (59%), Gaps = 41/1033 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + ++ K+A PA+A+TD NL ++F A ++G++PIIG D MQ Sbjct: 1 MVDGLSKVPALVKKVAEMGMPAVALTDFTNLCGLVKFYGSAHSSGVKPIIGA--DFLMQS 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 G+ + I +L + GY+ L L+S+ YL + I WL E+ + Sbjct: 59 E----EFGEE----LTRITVLAADNLGYKNLTLLISKAYLRGHIQHHPVIDKKWLAEL-S 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 +GLI+L+GG SG I +A + VA + + +K+ F DR Y+ L R R + Sbjct: 110 QGLIVLSGGRSGEIGKALLKGNQHVASQCVDFYKEYFPDRFYLELTRTGRADEEAYLHFA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 ++LA +LP+VATN + L + +EAH++ +A+ + RP+ + YL++ E Sbjct: 170 LELAEITQLPVVATNEVVILDDSFFEAHEIRVAIHDGYTLEDPRRPKNYSSQQYLRSEQE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALEN+VEIA+RC+ +++ LP F D + EE L K+ GL Sbjct: 230 MCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAF---PTDGM--EETEFLIKKSQQGL 284 Query: 320 EVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL AQ +Y +RL EL VI M F GYFLIV +FIQW+K N IPVGP Sbjct: 285 EERLEFLFPDPNTRAQRRPEYDERLQVELEVINNMGFPGYFLIVMEFIQWSKDNAIPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L + VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPPDPGMTLE-KAFQAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 E D + L+++ + LEG R+A HA G+VI ++ P+Y D PVT Sbjct: 464 ALPELYNNDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L + R + V + IP D +++L Sbjct: 524 QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKLPVVIESIPLQDQASFNL 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQNAETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 I H + L T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 AISYPDETWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNG++ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP Sbjct: 704 MAKQRGTFKEGAEKNGVNGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V + I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECIRMKLKVLPPDINSGVYRFNVDETGAIVYGIGAIK 823 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+ A F L DFC+R+D KK+N+RV+E L++AGALD G R ++ Sbjct: 824 GVGEGPIEAILTAREKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAAMM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 SL++ K A + + ++F K T + + V E E+ L Sbjct: 884 ASLNDAVKAASQHHQAESFGQTDLFGVLTQAPDEIEKKYT--QVAPWPEKVWLEGERDTL 941 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G Y +GHP++ Y L K +++ T R ++ ++ +V++ + T++GSRIG +T Sbjct: 942 GLYLTGHPINAYLRELTKYTSCRLKDATPTRRDQSVTVSGLVIAARVMTTKRGSRIGIMT 1001 Query: 1020 FSEPAKEYEANFF 1032 + + E F Sbjct: 1002 LDDRSGRMEVMLF 1014 >gi|114330405|ref|YP_746627.1| DNA polymerase III, alpha subunit [Nitrosomonas eutropha C91] gi|114307419|gb|ABI58662.1| DNA polymerase III, alpha subunit [Nitrosomonas eutropha C91] Length = 1166 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/994 (41%), Positives = 596/994 (59%), Gaps = 56/994 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL++HS YS+++G + + + K PA+A+TD +NLF ++F Q AC AGI Sbjct: 4 NPVFVHLRLHSEYSVVDGIVRIEEAVAKARDTGMPALALTDLSNLFGLVKFYQHACKAGI 63 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI GC + I + N PF ++LL + GY L L+SR Y + + Sbjct: 64 KPIAGCDVWISNE------NDADRPF----RLLLLCQSFSGYLLLSRLLSRAYRENMQRG 113 Query: 128 SVRICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + W +E GTEGLI L+GG G ++R A + LF +R Y+ + Sbjct: 114 RAELKKDWFREGAGTEGLIALSGGEQGEVER-LLLADPDAATTAAQEWAALFPERFYLEI 172 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR R + +++L +LP+VAT+ F+ ED+ AH+ + +A V+ + R Sbjct: 173 QRCGRPDEEVTNHAMLELVSGLKLPVVATHPVQFMQPEDFRAHEARVCIAQGYVLGDRRR 232 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR T Y K +EM +F D+PEAL N+VEIARRCS +L++ LP F + Sbjct: 233 PREFTEQQYFKTAAEMSELFGDVPEALANSVEIARRCSLMLELGVNRLPDFPTPAGISV- 291 Query: 305 KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E LR++A AGL VR+ Q A + Y+ RLDFE+ I +M F+GYFLIV+ Sbjct: 292 ---EQYLRDRAQAGLVVRMTQLFPEAAQRDEKYPAYQARLDFEVETIIQMGFAGYFLIVS 348 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK++++PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFDID Sbjct: 349 DFISWAKQHDVPVGPGRGSGAGSLVAYSLDITDLDPLRYDLLFERFLNPERVSMPDFDID 408 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR++VI YV+++YG E VAQI TFG++ AKA +RDVGR L +PY+ VD+L KL+P Sbjct: 409 FCQDRREQVIEYVRDRYGAESVAQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAKLVPF 468 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A + + A+ V LLE++++LEGL R+ HA G++I ++ Sbjct: 469 ELGMTLH-KAREIEPLLNQRAEAEEDVRNLLELAERLEGLTRNVGMHAGGVLIAPGKITD 527 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------- 594 P+Y D V+Q++ +EK GL+KFDFLGL+TLT+L +++ + Q + Sbjct: 528 FCPVYCADSGDAVVSQYDKDDVEKIGLVKFDFLGLRTLTILDRAVADIRQYQLASLGGKD 587 Query: 595 ---------KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + L I +D T+ L+ T+GIFQ ES GM+ L+ +PD ED+IA Sbjct: 588 AGEQSVEENRFSLGDISLEDAATFALMAKGNTVGIFQFESRGMKDLLQKAKPDRFEDLIA 647 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 LV+LYRPGP+D I + RK+GK ++ + P + P+L T G++IYQEQVMQIAQ++ GY Sbjct: 648 LVALYRPGPMDLIPDFIERKHGK-RVEYLDPRLQPILGPTYGIMIYQEQVMQIAQVIGGY 706 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL AD+LRRAMGKK EEM +Q+ F+ GA +NG+ + AV +F L+ KFA YGFNKSH Sbjct: 707 SLGGADLLRRAMGKKKVEEMAQQRAVFVEGAIRNGMMEADAVTLFSLMEKFAGYGFNKSH 766 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 AAAYA+I+YQTA++K HYP EF+AA M+ +MD+ +K+ F +D + I I+PP +N Sbjct: 767 AAAYALIAYQTAYLKAHYPAEFMAACMSSDMDDTDKVNVFYEDCKLNGIAILPPDINQSA 826 Query: 826 VDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLE 883 F D + I Y L AIKG G I+ A F L DFC RVD + +NRR +E Sbjct: 827 YYFVPVDRKTIRYGLGAIKGTGEAAISAIVRAREQGIAFTGLFDFCQRVDRRIVNRRTIE 886 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 +L+ AGA D +R L+ S+ +YA+ H ++ A + F D L + Sbjct: 887 ALIRAGAFDTVEANRAALMASVGMALEYAE---------HCSLTASQVSLFDDNADLLQQ 937 Query: 944 SVENSSVRFENEQRV------LGFYFSGHPLDVY 971 V ++ ++++ LGFY SGHP D Y Sbjct: 938 PVITEIAQWPEKEKLQYEKMSLGFYLSGHPYDSY 971 >gi|115352403|ref|YP_774242.1| DNA polymerase III subunit alpha [Burkholderia ambifaria AMMD] gi|115282391|gb|ABI87908.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria AMMD] Length = 1177 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1032 (40%), Positives = 620/1032 (60%), Gaps = 60/1032 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNPDDRDKPS--RLLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL ++GL+ L+G G I AF ++ + A + + K+F Y+ LQR Sbjct: 114 AELDASWLDGELSQGLLALSGAQQGDIGLAFAADNEEAARRHAERWAKVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTDQYFRTQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLEKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ VG+ Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCIVNNLVVLPPDINQSHYRFEPVGEADGKR 828 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 D +R Q+L S+ A + + H + E + DK Sbjct: 889 DSLNANRAQMLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEP-AWDDK---- 943 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000 R + E+ LGFY SGH D Y+ +R+ + + ++ G + +A + Sbjct: 944 --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGDLKEGRDKLVAGI 991 Query: 1001 VVSKQQKKTRKG 1012 + S + + T++G Sbjct: 992 IASLRTQMTQRG 1003 >gi|312796952|ref|YP_004029874.1| DNA polymerase III alpha subunit [Burkholderia rhizoxinica HKI 454] gi|312168727|emb|CBW75730.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 1198 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1022 (40%), Positives = 616/1022 (60%), Gaps = 39/1022 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++ +++ A D Q A+A+TD N F + F + A A G++ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDAVERAAEDGQGALALTDLANAFGLVRFYKAARAHGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G + + D+ + ++LLV GY L EL+SR +L +Q + Sbjct: 64 PIVGADVWVSNPDDRDKPAR----------LLLLVKDRRGYLNLCELLSRAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL+ EGL+ L+G G I A + Q A + + +F + Y+ LQR Sbjct: 114 AEVDCQWLETGLAEGLLALSGAQHGDIGIALAAGNVQAATRHAQRWAAIFPNAFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R G + Y + Q V+LA +LP+VAT+ F++ ED+ AH+ + ++ +++ R Sbjct: 174 MRQPGVEAYVQ-QAVELAAQLKLPVVATHPVQFMTPEDFTAHEARVCISEGDILANPRRA 232 Query: 247 -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + D Y + +M +F+D+P AL NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFSTDQYFFTQQQMGELFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q A + Q Y++RL FE + I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKTGLEQRLEQLFPDATQRNARRQTYQERLAFECDTIIKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ A+AL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAFALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQD RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y+ D + KLIP Sbjct: 409 CQDGRDRVIQYVKSKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYNFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LLE++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERFDNEDEVRQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPGP+D I Sbjct: 589 AQVPLDDPASFTILKNANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREMVEYPDPRVEPILKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+S A IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHRELFREGAAKNGLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832 +K H+P EF+AA+M+L MD+ +K+K +D ++ ++PP +N F+ V D Sbjct: 769 LKVHHPAEFMAANMSLAMDDTDKVKILFEDCIANHLAVLPPDINQSAYRFEPVADAPGKR 828 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +PF L DFC RVD + +NRR +E+L+ AGA Sbjct: 829 SKTIRYGLGAIKGSGQNAIEEILRARESQPFSDLFDFCERVDRRIVNRRTIEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ N +F G+ + L + Sbjct: 889 DSLHENRAQLLASVPLAMEAAEQASANALQG--GLFDMPDGSSGHQHELVDEPAWTEKRK 946 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D YK +R+ + + ++ G + +A ++ + + + T+ Sbjct: 947 LQEEKAALGFYISGHLFDAYKDEVRRF----VRQKIGELKEGRDKVIAGVITAMRTQMTQ 1002 Query: 1011 KG 1012 +G Sbjct: 1003 RG 1004 >gi|294666388|ref|ZP_06731634.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603830|gb|EFF47235.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1196 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1009 (40%), Positives = 601/1009 (59%), Gaps = 64/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFNEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G +R+ + + A LP+VA+N+ FL D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGRDGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ L Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I +M Sbjct: 291 PAYPVPEDETL----DSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522 D + KLIPN ++L+ + + ++ +A P V L++++++LE L Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PLS+ P++ D R PVTQF+ +E GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632 LT++ ++ + R + VD++ IP DD TY + G G +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 + + PP VN F + I Y L AIKGVG I+E P+ +L DFC+ Sbjct: 823 GLTVKPPRVNESAYMFAAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + ++ L + E+ LGFY SGHP D ++ +R++ Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991 >gi|294625959|ref|ZP_06704571.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599754|gb|EFF43879.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1196 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1009 (40%), Positives = 601/1009 (59%), Gaps = 64/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFNEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G +R+ + + A LP+VA+N+ FL D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGRDGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ L Sbjct: 231 ISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I +M Sbjct: 291 PAYPVPEDETL----DSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522 D + KLIPN ++L+ + + ++ +A P V L++++++LE L Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PLS+ P++ D R PVTQF+ +E GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632 LT++ ++ + R + VD++ IP DD TY + G G +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 + + PP VN F + I Y L AIKGVG I+E P+ +L DFC+ Sbjct: 823 GLTVKPPRVNESAYMFAAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 883 RVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + ++ L + E+ LGFY SGHP D ++ +R++ Sbjct: 943 DPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVREL 991 >gi|89900825|ref|YP_523296.1| DNA polymerase III subunit alpha [Rhodoferax ferrireducens T118] gi|89345562|gb|ABD69765.1| DNA polymerase III, alpha subunit [Rhodoferax ferrireducens T118] Length = 1185 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/997 (41%), Positives = 590/997 (59%), Gaps = 52/997 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL++H+ +S+++G + + + AAD QPA+AITD +NLF A++F + A G++P+ Sbjct: 2 FIHLRLHTEFSVVDGTNRIGDSVKAAAADGQPALAITDLSNLFGAIKFYKAARKCGVKPL 61 Query: 71 IGCQLDIDM--QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG ++ ++ QD ++ ++LLV +GY L EL++R + K Sbjct: 62 IGAEIWLEGLGQDASALS-----------RLLLLVQNKQGYLNLSELLARAWTQQGNKAQ 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + L WL+E+G EGLI+L+G +GP+ +A A L +F R Y+ LQR Sbjct: 111 ASVKLDWLKELG-EGLIVLSGAQAGPVGQALLQGDVARALDAALQLAGVFTHRFYLELQR 169 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246 R D VQLA LP+VAT+ F +D+EAH+ + +A ++S R Sbjct: 170 AGRPDDEAHVVATVQLAARAGLPVVATHPIQFAGPDDFEAHEARVCIADGEILSNPRRVR 229 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R T + Y K+ ++M ++F+D+P AL NT+EIARRC+ L + P LP F E + + Sbjct: 230 RFTREQYFKSSAQMQALFADVPSALANTLEIARRCNLTLVLDKPQLPDFPTPEVNGQRMT 289 Query: 307 EENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ R + GL+ R+A A +G Y RL+FELN I +M F GYFLIV DF Sbjct: 290 PDDYFRYASHEGLKERMAHLYPDAAQRGQEMPRYLARLEFELNTIVKMGFPGYFLIVGDF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK N PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDFC Sbjct: 350 INWAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLRYNLLFERFLNPERVSMPDFDIDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q R+ VI YV++KYG + V+QI+TFG++ A+AA+RDVGR L M Y+ D + KLIPN P Sbjct: 410 QTNRNLVIDYVKSKYGKDAVSQIVTFGTMAARAAVRDVGRVLDMSYTFCDGISKLIPNKP 469 Query: 484 AHPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 VSLQ A+ + E + V LLE+++KLEGL R+ HA Sbjct: 470 GVSVSLQLPPPDRKKDDKTVYAVEAEPLLAEREAKEEDVKTLLELARKLEGLTRNVGMHA 529 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 G++I L+ P+Y+ SD V+QF+ +E GL+KFDFLGL TLT+L+ + DF+ Sbjct: 530 GGVLIAPGKLTDFCPLYQQPGSDSAVSQFDKYDVEAIGLVKFDFLGLATLTILEIARDFI 589 Query: 590 AQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 +R + +P DD Y L T +FQ ES GM+ L+ +P +ED+IAL Sbjct: 590 IERHRGQENFAFENLPLDDMRVYKLFQEGKTEAVFQFESRGMQGMLKDAKPTRLEDLIAL 649 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 +LYRPGP+D I + RK+G+E + HPL+ ML ET G+++YQEQVMQ AQ+L GYS Sbjct: 650 NALYRPGPMDLIPSFVARKHGREVVEYPHPLVAEMLSETYGIMVYQEQVMQTAQILGGYS 709 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK +EM +Q++ F GA+KN I++ A +F+L+ KFA YGFNKSHA Sbjct: 710 LGGADMLRRAMGKKDADEMARQRQIFRDGAAKNNINQAKADEVFDLMEKFAGYGFNKSHA 769 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAY++++Y TAW+K HY EF A+MT+EMD+ +K+K +DA + + PP VN Sbjct: 770 AAYSLLAYHTAWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDALKMGLTFEPPDVNRGGS 829 Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSK 875 F+ + D I Y L+AIKG G I+ A + PF SL DFC RVD Sbjct: 830 RFEPISDKVIRYGLSAIKGSGQQAIEAIVAAREGRGVGPSGDVAGPFKSLFDFCVRVDRS 889 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KG 932 ++N+R +E+L+ AGA D +R LL S D ++ N +F + +G Sbjct: 890 RVNKRTVEALIKAGAFDAIQLNRASLLASTDLAFEFGAAALANAN--QGGLFDMDDDAQG 947 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + + + L + R E+ +GFY SGH D Sbjct: 948 SSTQEPELVQAVPWGVKERLTFEKTAVGFYLSGHLFD 984 >gi|254360522|ref|ZP_04976671.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica PHL213] gi|153091062|gb|EDN73067.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica PHL213] Length = 1142 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1036 (40%), Positives = 607/1036 (58%), Gaps = 48/1036 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 ++ G + +++ AA+ A+ +TD N ++F +A AGI+PIIG + + Sbjct: 1 MINGLAKVKSLVKTAAANNMVAMGLTDFINFCGLVKFYGEALGAGIKPIIGADVYV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC-LSWLQEIG 140 T G + + LL +GY + +++S+ Y QG + WL E+ Sbjct: 57 ---RTESGNEDYF---ELTLLAKNNKGYHNITQILSKAY--QQGYVEFPMVEREWLAEL- 107 Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQ 199 EG+I+L+GG G + +A + Q AE++L +++ + + Y+++ R D R Q Sbjct: 108 NEGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQYYPNHFYLSVCRTGRADEERYIKQ 167 Query: 200 VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRS 258 V+ + + +PLVA N+ +FL E+D++AH++ +A+ S + RP+ +P Y + Sbjct: 168 AVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEE 227 Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318 EM +F+DLP AL NTVEIA+RCS +++ LP F E E+ L K+ G Sbjct: 228 EMCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPNFPTGELST-----EDFLVKKSKEG 282 Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375 LE RL + Y +RL EL+VI +M F GYFLIV +FIQW+K N+IPVG Sbjct: 283 LEERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVG 342 Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435 PGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V Sbjct: 343 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVA 402 Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495 YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP DP + +A A + Sbjct: 403 ETYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAE 461 Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PV Sbjct: 462 PKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPV 521 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH 610 T F+ +E AGL+KFDFLGL+TLT+++ +L+ + +R + + + IP DD +++ Sbjct: 522 THFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETIPLDDKKSFA 581 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGK 668 LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+++ +V N +RK+GK Sbjct: 582 LLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGK 641 Query: 669 EKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 E++ H + P+L+ T GVI+YQEQVMQIAQ L+GY+L AD+LRRAMGKK E Sbjct: 642 EEVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPE 701 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM Q+E F GA GI +A IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY Sbjct: 702 EMAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 761 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842 P EF+AA MT EMDN +KI F + + ++PP VN+ F V + I Y L AI Sbjct: 762 PAEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAI 821 Query: 843 KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 KGVG I+ A + F L D +RVD KK+NRR ESL+ +GA D G R L Sbjct: 822 KGVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAAL 881 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-----SVRFENEQ 956 +++L++ K + K ++F G ++ + + N+ V + E+ Sbjct: 882 MKNLEDALKASDQHAKMEELGQSDMF----GVLTETPEEVQNAYANTPKWSEQVILDGER 937 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LG Y SGHP+ + L E T RG ++ +V++ + T++GSRIG Sbjct: 938 ATLGLYLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIG 997 Query: 1017 WVTFSEPAKEYEANFF 1032 T + + + + F Sbjct: 998 IATIEDRSGKLDITLF 1013 >gi|68249339|ref|YP_248451.1| DNA polymerase III subunit alpha [Haemophilus influenzae 86-028NP] gi|68057538|gb|AAX87791.1| DNA polymerase III alpha subunit [Haemophilus influenzae 86-028NP] Length = 1159 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1053 (39%), Positives = 615/1053 (58%), Gaps = 56/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + ++G++ Sbjct: 5 PRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLSSGMK 64 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + K G F + LL EGY+ + L+S+ Y +G Sbjct: 65 PIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QRGYND 112 Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + I WL E +G+I+L+GG+ G + + + E + +++ F D Y+ L Sbjct: 113 LPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALS 171 Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R + R Q ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + RP Sbjct: 172 RTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDPKRP 231 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 232 KCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL----- 286 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV + Sbjct: 287 STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP D Sbjct: 407 CMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPD 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A + + + A +D V L+ +++KLEG+ R+A HA G+VI ++ Sbjct: 467 PGMTLA-KAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVD 597 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V +VD Sbjct: 526 APLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKPRVD 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 586 IAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQS 645 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L A Sbjct: 646 GMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N F V Sbjct: 766 LVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHHFSV 825 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL+ + Sbjct: 826 NEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESLIMS 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D G R L ++L++ + + K+ ++F T D VEN+ Sbjct: 886 GAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHED--------VENA 937 Query: 949 SVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 + E+ LG Y S HP+ Y L ++ RG +A Sbjct: 938 YANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAG 997 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T+KG+R+G T + + + F Sbjct: 998 LVVASRIAMTKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|206901842|ref|YP_002251105.1| DNA polymerase III alpha subunit [Dictyoglomus thermophilum H-6-12] gi|206740945|gb|ACI20003.1| DNA polymerase III alpha subunit [Dictyoglomus thermophilum H-6-12] Length = 1127 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1026 (39%), Positives = 638/1026 (62%), Gaps = 27/1026 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA ++ ++D+ PA+AITD ++ ++F + A GI+P Sbjct: 2 SFVHLHVHTEYSLLDGACRIDELIDQALEFNMPAVAITDHGVMYGVIDFYKNAKEKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + +T + ++LL EGY+ LI++VS + L+ Sbjct: 62 IIGCEVYV--APGSRFDKKQRT---DLYHLILLAKDFEGYKNLIKIVS-LSFLEGFYYKP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L+E ++G+I L+ +G I N+ + A+ + + +FG+ Y+ LQ + Sbjct: 116 RVDKELLREY-SKGIIALSSCLAGEIPSYILQNNLEKAKNAIKEYLDIFGEDFYLELQNN 174 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ Y S +++L+ +PLVATN+ +L +ED E HD+L+ + + ++ KDR R Sbjct: 175 GMEEQEYVNSYLIKLSRELNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRF 234 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y K+ EM ++F D+P+A+ENT++IA +C+ + ++ ILP F E + + Sbjct: 235 KTNEFYFKSPEEMKALFKDVPDAIENTLKIAEKCNVEIPLNNVILPVFEVPEGETL---- 290 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ G + R + ++ R+RL +E++VI +M FSGYFLIV DF+ +A Sbjct: 291 DSYFERLCWEGAKKRFGEDI------PENIRERLSYEISVIKQMGFSGYFLIVQDFVNYA 344 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K IPVGPGRGS AGS+ +Y L IT+I+P R+ L+FERFLNP+R++MPD DIDFC +RR Sbjct: 345 KSRGIPVGPGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERR 404 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV+NKYG E VAQIITFG++ A+A++RDVGR L +PY++VDR+ KLIP P + Sbjct: 405 EEVIEYVRNKYGKEHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLIP--PNTSI 462 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ R +P R++EI++++EG RHAS HAAGIVI PL + VP+ Sbjct: 463 E-EALNTSEELRNLVENNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQV 521 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606 +D+ VTQ M +E+ GL+K DFLGL+TLT++ ++ + + G+++D++ I D Sbjct: 522 MNGTDV-VTQLPMTNLEELGLLKMDFLGLRTLTVIYDTIKKIKENYGIEIDINNISLSDE 580 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y LL T+G+FQLES GMR L ++P+ ED+IA+++LYRPGP+ + Y RK Sbjct: 581 KVYELLQKGETIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPLGRLESYIKRKR 640 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EK+ +HP ++P+L ET GVIIYQEQVM+IA L+G++L +ADVLRRAMGKK E M+ Sbjct: 641 GEEKVEYMHPALEPILAETYGVIIYQEQVMEIAHRLAGFTLGQADVLRRAMGKKKPEVME 700 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +Q+ F+ GA + GI + +A+ IFE +AKFA+YGFNKSH+AAYA +S+QTA++K +YP E Sbjct: 701 EQRGIFVKGAVERGIPENVAIEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKAYYPKE 760 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 ++A+ +T ++ K+ K+ +A++ I+I+PP VN VDF V I + L+AIK VG Sbjct: 761 YMASLLTSVKNSTTKLSKYIAEAKRIGIKILPPDVNESVVDFTVTPQGIRFGLSAIKNVG 820 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + A I+E + F S+ DF R+ SK +N+R LESL+ +GA D FGYSR LL+++D Sbjct: 821 ESVAEAIVEERSRGRFKSIFDFIKRLSSKVINKRALESLIKSGAFDSFGYSRRALLENID 880 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 I + AQ +++ + I + +FS++ E E+ +LGFY S Sbjct: 881 KILESAQVMKRAHIGQVSLIDLESLPQEEIINNMPEFSIDEI---LEMEKEMLGFYVSYD 937 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 P + + I K+ ++ V G+ + + ++ + ++ RK ++ + T + E Sbjct: 938 PQEELRKISEKLFDYTIDDLVEVESGSQVIVPGILKNVREVIDRKNQKMLFATLEDFTGE 997 Query: 1027 YEANFF 1032 E F Sbjct: 998 AEITVF 1003 >gi|172061275|ref|YP_001808927.1| DNA polymerase III subunit alpha [Burkholderia ambifaria MC40-6] gi|171993792|gb|ACB64711.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6] Length = 1190 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1032 (40%), Positives = 619/1032 (59%), Gaps = 60/1032 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A GI+ Sbjct: 17 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 76 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 77 PIAGC--------DVWITNPDDRDKPS--RLLLLVKDKVGYLNLCELLSKAWLTNQYRGR 126 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL ++GL+ L+G G I AF + + A + + K+F Y+ LQR Sbjct: 127 AELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIELQR 186 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 187 YGQPGAEAYIQ-QAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQ 245 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 246 KRFTTDQYFRTQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 303 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y +RL+FE I +M F GYFLIVAD Sbjct: 304 --DDYLVQLSKEGLEKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 361 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 362 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 421 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 422 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 481 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 482 PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 541 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 542 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSL 601 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 602 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 661 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 662 PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 721 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 722 KKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 781 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ VG+ Sbjct: 782 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEADGKR 841 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGA Sbjct: 842 SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGAF 901 Query: 892 DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 D +R Q+L S+ A + + H + E + DK Sbjct: 902 DSLNANRAQMLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEP-AWDDK---- 956 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000 R + E+ LGFY SGH D Y+ +R+ + + ++ G + +A + Sbjct: 957 --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGDLKEGRDKLVAGI 1004 Query: 1001 VVSKQQKKTRKG 1012 + S + + T++G Sbjct: 1005 IASLRTQMTQRG 1016 >gi|171318166|ref|ZP_02907332.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5] gi|171096634|gb|EDT41523.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5] Length = 1177 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1032 (40%), Positives = 619/1032 (59%), Gaps = 60/1032 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNPDDRDKPS--RLLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL ++GL+ L+G G I AF + + A + + K+F Y+ LQR Sbjct: 114 AELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y + + +MV++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTDQYFRTQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLEKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ VG+ Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEADGKR 828 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKPFSDLFDFCERIDRRVVNRRTVEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 D +R Q+L S+ A + + H + E + DK Sbjct: 889 DSLNANRAQMLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEP-AWDDK---- 943 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000 R + E+ LGFY SGH D Y+ +R+ + + ++ G + +A + Sbjct: 944 --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGDLKEGRDKLVAGI 991 Query: 1001 VVSKQQKKTRKG 1012 + S + + T++G Sbjct: 992 IASLRTQMTQRG 1003 >gi|161524140|ref|YP_001579152.1| DNA polymerase III subunit alpha [Burkholderia multivorans ATCC 17616] gi|189351103|ref|YP_001946731.1| DNA polymerase III subunit alpha [Burkholderia multivorans ATCC 17616] gi|160341569|gb|ABX14655.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC 17616] gi|189335125|dbj|BAG44195.1| DNA polymerase III alpha subunit [Burkholderia multivorans ATCC 17616] Length = 1179 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1032 (40%), Positives = 619/1032 (59%), Gaps = 60/1032 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A + G++ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNPDDRDKPS--RLLLLVKNKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ +EGL+ L+G G I A + + A + + K+F Y+ LQR Sbjct: 114 AELDASWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 SQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+S+ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGD 832 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N P + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPDGKR 828 Query: 833 NR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +R I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSLD----------NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 D +R QLL S+ A + + H + E + DK Sbjct: 889 DSLNANRAQLLASVTLAMEAAEQAEANALQAGLFDMGAESPHAHALVDEP-AWDDK---- 943 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000 R + E+ LGFY SGH D Y+ +R+ + + ++ G + +A + Sbjct: 944 --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGELKEGRDKLVAGI 991 Query: 1001 VVSKQQKKTRKG 1012 + S + + T++G Sbjct: 992 IASLRTQMTQRG 1003 >gi|26988338|ref|NP_743763.1| DNA polymerase III subunit alpha [Pseudomonas putida KT2440] gi|24983087|gb|AAN67227.1|AE016349_8 DNA polymerase III, alpha subunit [Pseudomonas putida KT2440] Length = 1174 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1066 (39%), Positives = 609/1066 (57%), Gaps = 62/1066 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+VHS +SL++G + + + + PA+AITD +N+ S ++F + A AGI Sbjct: 2 SVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G L + G P + I L +GY+ L EL+SR + Q Sbjct: 62 KPICGADLWL----------AGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 V + W+ +EGLI L+ G G I A AE L + +F +R YV +Q Sbjct: 112 LVILQREWIAP-ASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQ 170 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R +R D V LA PLVATN+ F+ + D++AH+ + + + RP Sbjct: 171 RTNRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRP 230 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I Sbjct: 231 RCYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360 ++ LR+ A GLE RLA Y Q Y RL FEL++I +M F GYFLIV Sbjct: 289 --DDYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+ Sbjct: 347 MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP Sbjct: 407 DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A + R+ D + +++ KLEG+ R HA G+VI L+ Sbjct: 467 FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + K Sbjct: 526 DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +++ IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ Sbjct: 586 LNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645 Query: 656 DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + NRK+G+ ++ H + P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 646 QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825 Query: 829 KV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886 V D RI Y L AIKGVG I+EA A PF L DFC R+D K++N+R L++LV Sbjct: 826 TVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALV 885 Query: 887 FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---- 927 +GALD G +R LL +L K A+ + H ++F Sbjct: 886 RSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMF 945 Query: 928 -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 A + +++ + + +++ R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 DAADVDVYANHRKVRELTLKE---RLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDL 1002 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + I A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1003 KPSRETQTI--AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|221199588|ref|ZP_03572632.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M] gi|221205512|ref|ZP_03578527.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2] gi|221174350|gb|EEE06782.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2] gi|221180873|gb|EEE13276.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M] Length = 1179 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1032 (40%), Positives = 620/1032 (60%), Gaps = 60/1032 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A + G++ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNPDDRDKPS--RLLLLVKNKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ +EGL+ L+G G I A + + A + + K+F Y+ LQR Sbjct: 114 AELDASWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 SQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+S+ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGD 832 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N P + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPDGKR 828 Query: 833 NR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +R I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 D +R QLL S+ + A + + H + E + DK Sbjct: 889 DSLNANRAQLLASVPLAMEAAEQAEANALQAGLFDMGAESPHAHALVDEP-AWDDK---- 943 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000 R + E+ LGFY SGH D Y+ +R+ + + ++ G + +A + Sbjct: 944 --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGDLKEGRDKLVAGI 991 Query: 1001 VVSKQQKKTRKG 1012 + S + + T++G Sbjct: 992 IASLRTQMTQRG 1003 >gi|294635137|ref|ZP_06713647.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685] gi|291091473|gb|EFE24034.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685] Length = 904 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/918 (43%), Positives = 573/918 (62%), Gaps = 38/918 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL VHS YS+++G + ++ K+AA PA AITD NL ++F A AGI+ Sbjct: 4 PRFIHLHVHSDYSMIDGLAKTSPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P++G D+ M+ + M ++ + S+ +L S GYQ L +L+S Y G + Sbjct: 64 PLVGA--DVLMRSEM-MGDE-------LASLTILASDNTGYQNLTQLISHAYQRGYGAEG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + +GLI+L+G G + + + + + +++ F D ++ L R Sbjct: 114 PTIDRDWLVQY-RQGLILLSGARQGDVGKLLLRGNQASVNECVDFYQRYFPDCYFLELVR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA +LPLVA+N+ FL D++AH++ +A+ + RPR Sbjct: 173 TGRPDEENYLHMAVELAQQRDLPLVASNDVRFLEASDFDAHEIRVAIHDGYTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + Y+++ +EM +F+DLPEAL+N+VEIA+RC+ +++ LP+F E Sbjct: 233 NYSAQQYMRSEAEMCELFADLPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGEM-----T 287 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 E L KA GLE RL + A+ Y +RL+ EL VI +M F GYFLIV +F Sbjct: 288 TEAFLVKKAHEGLEERLTFLFPDEAERARCRPPYDERLEIELKVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDRVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R + VD+ Sbjct: 527 PLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRARHGLEPVDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + P+L+ T GVI+YQEQVMQIAQ+L+GYSL AD Sbjct: 647 MVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NG+ +A++IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 LLRRAMGKKKPEEMAKQRSVFEEGARNNGVDGELAMHIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYHFHVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA---SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 D I Y + AIKGVG I+EA F L D C+R D+KKLNRRV+E L+ Sbjct: 827 DEGEIVYGIGAIKGVGEGPIEAIIEARNRGEQGYFKDLFDLCARTDTKKLNRRVMEKLIM 886 Query: 888 AGALDCFGYSRMQLLQSL 905 +GA D G R L+ SL Sbjct: 887 SGAFDRLGPHRAALMSSL 904 >gi|313500226|gb|ADR61592.1| DnaE [Pseudomonas putida BIRD-1] Length = 1174 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1066 (39%), Positives = 609/1066 (57%), Gaps = 62/1066 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+VHS +SL++G + + + + PA+AITD +N+ S ++F + A AGI Sbjct: 2 SVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G L + G P + I L +GY+ L EL+SR + Q Sbjct: 62 KPICGADLWL----------AGADPDAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 V + W+ +EGLI L+ G G I A AE L + +F +R YV +Q Sbjct: 112 LVILQREWIAP-ASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQ 170 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R +R D V LA PLVATN+ F+ + D++AH+ + + + RP Sbjct: 171 RTNRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRP 230 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I Sbjct: 231 RCYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360 ++ LR+ A GLE RLA Y Q Y RL FEL++I +M F GYFLIV Sbjct: 289 --DDYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+ Sbjct: 347 MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP Sbjct: 407 DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A + R+ D + +++ KLEG+ R HA G+VI L+ Sbjct: 467 FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + K Sbjct: 526 DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +++ IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ Sbjct: 586 LNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645 Query: 656 DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + NRK+G+ ++ H + P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 646 QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825 Query: 829 KV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886 V D RI Y L AIKGVG I+EA A PF L DFC R+D K++N+R L++LV Sbjct: 826 TVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALV 885 Query: 887 FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---- 927 +GALD G +R LL +L K A+ + H ++F Sbjct: 886 RSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMF 945 Query: 928 -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 A + +++ + + +++ R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 DAADIDVYANHRKVRELTLKE---RLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDL 1002 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + I A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1003 KPSRETQTI--AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|90413544|ref|ZP_01221535.1| DNA polymerase III subunit alpha [Photobacterium profundum 3TCK] gi|90325476|gb|EAS41959.1| DNA polymerase III subunit alpha [Photobacterium profundum 3TCK] Length = 1158 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1052 (38%), Positives = 624/1052 (59%), Gaps = 54/1052 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL HS +S+++G ++ ++ K+A PA+A+TD NL ++F A AG++ Sbjct: 4 PRFIHLHTHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHGAGMK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + ++ + N+ + + +L + +GYQ L L+S+ YL + Sbjct: 64 PIIGADFKVHSEE---LDNE-------LADLTILAADNDGYQNLTMLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + ++GLI+L+G G + +A + + + + ++ F D Y+ L R Sbjct: 114 PVIDKEWLAQY-SKGLILLSG-RCGDVGKALLKGNKSLVNRCVEFYQTHFEDSFYLELVR 171 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D V+LA +LP+VATN+ F+S E ++AH++ +++ + +RP+ Sbjct: 172 TGRPDEDAFIHFAVELAANEDLPVVATNDVRFISAEQFDAHEIRVSIHDGYTIVDPNRPK 231 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + +P YL+ EM +FSD+PEAL N+VEIA+RC+ +++ LP F + Sbjct: 232 LYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGDL-----S 286 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RL+ EL VI +M F GYFLIV +F Sbjct: 287 TEDFLVVKSREGLERRLAFLFPDEAVRVEKRPEYDERLEIELEVINQMGFPGYFLIVMEF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDRL K+IP +P Sbjct: 407 MDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMIPAEP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + +A AD V L+++ + LEG+ R+A HA G+VI ++ Sbjct: 467 GMTLA-KAFEAEPQLGDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTITDFS 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + A+ +++ Sbjct: 526 PLYCDAEGANPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKEPINI 585 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP D +++ +L + +FQLES GM+ ++ +QPD ED+IALV+L+RPGP+ + Sbjct: 586 ASIPMADKKSFDMLQRSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSG 645 Query: 659 VVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E++ H + +L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 646 MVDNFIDRKHGREEVSYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 705 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 706 MLRRAMGKKKPEEMAKQRTTFEEGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 765 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT ++K HYP EF+AA MT +MDN +KI + + I ++PP VN F V Sbjct: 766 VSYQTLYLKAHYPAEFMAAVMTADMDNTDKIIGLVDECLRMKIPLLPPDVNKGLYRFNVD 825 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I Y + A+KGVG +++EA F L DFC+R+D+KK+N+RVLE L+ +G Sbjct: 826 EQGAIVYGIGAVKGVGEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKLIKSG 885 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS- 948 A+D G +R ++ +L++ K A +H A + +T VE + Sbjct: 886 AMDRLGPNRATMMATLNDAIKAA--------GQHHQAEAFGQADMFGVLTAAPEEVEQAY 937 Query: 949 --------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + E E+ LG Y +GHP++ Y L+ +++ T R +A + Sbjct: 938 ANIPEWPDKIWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGL 997 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V++ + T++G+RIG +T + + E F Sbjct: 998 VIAARVMTTKRGTRIGLMTLDDRSGRMEVMLF 1029 >gi|194365029|ref|YP_002027639.1| DNA polymerase III subunit alpha [Stenotrophomonas maltophilia R551-3] gi|194347833|gb|ACF50956.1| DNA polymerase III, alpha subunit [Stenotrophomonas maltophilia R551-3] Length = 1196 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1011 (40%), Positives = 608/1011 (60%), Gaps = 65/1011 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G ++ + +G+ P+ + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGA--------DVLIAEEGQDPW----RMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WL+ G L L G S R ++AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPDWLK-AGNANLFALAGRQS-LAGRLALDGKHELAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G + + + ++ A LP+VA+N+ FLS D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGREGEETFNQFALMA-AGQRGLPVVASNDVRFLSPTDFSAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D YLK+ EM ++F+D+P+A++NT+ +A RC+ +++ L Sbjct: 231 ISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + + + + + R+ GLE RL + +A G ++Y +RL+FELN I +M Sbjct: 291 PNYPVPDDETLDTWIQKMSRD----GLEERLEKNPLAPGKTREEYFERLEFELNTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L PY V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLV 466 Query: 473 DRLCKLIPN------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520 D + KLIPN P S A A+ + E+ + V L++++ +LE Sbjct: 467 DGVSKLIPNILGIHLKDALGKGKEGPSSEMASAELIQRYES---EDDVRDLIDLALQLED 523 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGL 576 L R+A HA G+VIG PLS+ P+Y + + PVTQF+ +E+ GL+KFDFLGL Sbjct: 524 LTRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFLGL 583 Query: 577 KTLTLLQKSLDFLAQR----GVK-VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQ 630 +TLT++ ++ + +R G+ VD++ IP DD TY + G G +FQ ESSGMR+ Sbjct: 584 RTLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGMRR 643 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690 L+ +PD ED+IALVSLYRPGP+D I +N RK+G+E+I+ P + +LK+T G+++ Sbjct: 644 LLKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMV 703 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K+G+ + A IF Sbjct: 704 YQEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADAIF 763 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 +L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN EK+ F + R Sbjct: 764 DLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTEKVVGFLDEVR 823 Query: 811 QFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDF 868 + ++PP VN F+ V + I Y L AIKGVG ++ E + L DF Sbjct: 824 NLGLTVLPPKVNHSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVDERLKGGDYKDLLDF 883 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 C+RV S KLNRR LE+++ GALD G++R L+ L + K + + + R + ++F Sbjct: 884 CTRVGSAKLNRRTLEAMINCGALDELGHNRASLMLQLPEVIKATEQMARERASGQNSLFG 943 Query: 929 H-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + T + ++ L + R E+ LGFY SGHP D ++ +R + Sbjct: 944 GPDPSTVTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDL 994 >gi|330427709|gb|AEC19043.1| DNA polymerase III subunit alpha [Pusillimonas sp. T7-7] Length = 1163 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1030 (40%), Positives = 621/1030 (60%), Gaps = 48/1030 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SPSFVHL+VHS +S+++G + +++ K A QPA+A+TD +NLF ++F + A AG+ Sbjct: 7 SPSFVHLRVHSEFSVVDGIARIPDLVKKAAEYGQPAMALTDLSNLFGFIKFYKAARKAGV 66 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G D+ +Q+ P+ ++LL S +GY L EL+SR +L +Q + Sbjct: 67 KPIAGS--DVWLQNE----QDRDKPY----RLLLLASDQQGYLALCELLSRAWLDNQYRG 116 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WLQ G GLI+L+GG +G I + + + A ++ + F D ++ LQ Sbjct: 117 RAEIRREWLQ--GKTGLIILSGGRAGDIGQLLEAGNVEEAAVVAASWARAFPDSYFIELQ 174 Query: 188 R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R H G + Y ++ ++LA LP+VAT+ FL +D+ AH+ + +A + R Sbjct: 175 RSGHEGDETYVQA-AMRLAGRVGLPVVATHPVQFLHADDFRAHEARVCIADGEQLGNAKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T + YL + ++M F+D+P AL NT+EIA+RC+ L + P LP F + + Sbjct: 234 VRKYTTEQYLLDSADMELRFADVPSALANTLEIAKRCNLTLVLDKPRLPNFPTPQGVTL- 292 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIVA 361 ++ L A GL VR+AQ + + Y Q RL +E I M F GYFLIVA Sbjct: 293 ---DDYLVQLAEEGLAVRMAQLFPEEAERQEKYPQYLERLQWECKTIIGMGFPGYFLIVA 349 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI W K N +PVGPGRGSGAGS+ AY+L ITD+DP+R+ LLFERFLNP+R+SMPDFDID Sbjct: 350 DFINWGKSNGVPVGPGRGSGAGSLVAYSLGITDLDPIRYDLLFERFLNPERVSMPDFDID 409 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RDVGR L+MPY D L KLIP Sbjct: 410 FCQDNRERVIDYVKQKYGKEAVSQIATFGTLGAKAVVRDVGRVLEMPYMLCDGLSKLIPF 469 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 PA P +L+ A+ ++ F+E D V L+++++ LEGL R+ HA G++I L+ Sbjct: 470 SPADPWTLKRALEEEPAFKERYDQDEEVRALIDLARPLEGLTRNIGMHAGGVLIAPGKLT 529 Query: 541 QLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KV 596 P+Y D V+QF+ +E AGL+KFDFLGL+ LT+L ++ ++ Q Sbjct: 530 DFCPLYCQPGVDTSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRDF 589 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ +P DD + Y LL+ T +FQLES GM++ L+ ++P+ ED+IA+++LYRPGP++ Sbjct: 590 DIMALPLDDAQAYKLLSDGNTTAVFQLESRGMKELLKNLRPNTFEDVIAMLALYRPGPLE 649 Query: 657 N--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V + NRK+G+ ++ HP ++P+L+ T GVI+YQEQVM I+Q++ GY+L AD+LR Sbjct: 650 SGMVVDFVNRKHGRAEVDYFHPDLEPVLQSTYGVIVYQEQVMLISQIIGGYTLGGADLLR 709 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM K + F GA + G +AV +F+L+ KFA YGFNKSH+AAYA+I+Y Sbjct: 710 RAMGKKKAEEMAKHRAIFEKGAVEKGYDADLAVKLFDLMEKFAGYGFNKSHSAAYALIAY 769 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833 QTAW+K ++P EFLAA+++ +MD+ +K++ F +D ++ ++PP VN F+ V D Sbjct: 770 QTAWLKYYHPAEFLAATLSSDMDDTDKVQIFWKDCLANSVTVLPPDVNASAYRFEPVADE 829 Query: 834 ---------RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883 I Y L A+KG G I+ A + P+ SL DFC RVD +NRR +E Sbjct: 830 FMAKGQPPRTIRYGLGAVKGTGQAAIEEIIRARTEGGPYASLFDFCRRVDRHTVNRRSIE 889 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 +L+ AGA D +R LL ++ N + A+ E R+ ++FA + + K Sbjct: 890 ALIRAGAFDAIAENRAALLATVANAIEAAEQAE--RSANQVSLFADNANDIVED-EVAKV 946 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + R E+ LGFYFSGH D ++ +R+ + A+ +++ A V+S Sbjct: 947 PAWDLQTRLRQEKAALGFYFSGHLFDAWRDEVRRFAPRPLARLEAS---RSLQWFAGVLS 1003 Query: 1004 K-QQKKTRKG 1012 + K TR+G Sbjct: 1004 SLRPKMTRRG 1013 >gi|58426179|gb|AAW75216.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1321 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1008 (40%), Positives = 601/1008 (59%), Gaps = 62/1008 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 131 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNLFALV 190 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I D TP+ + LL EGY L L+ Sbjct: 191 KFYKAAEGVGIKPIAGADVMIATPD--------MTPW----RMTLLCRDREGYLSLSRLL 238 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 239 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFSEGRADLAEQQLADWQ 296 Query: 176 KLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ + + Sbjct: 297 RVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEARVCI 356 Query: 235 AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + V+ RPR D YLK+ EM ++F+D+P+A++NT +A+RC+ +++ LP Sbjct: 357 SSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFLP 416 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + + + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I M F Sbjct: 417 AYPVPDDETL----DSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTIINMGF 472 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R+ Sbjct: 473 PGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERV 532 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y VD Sbjct: 533 SMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVD 592 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLYR 523 + KLIPN ++L+ + + ++ +A P V L++++++LE L R Sbjct: 593 SVAKLIPN--ILGITLKDAMGEGK--DSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 648 Query: 524 HASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ D R PVTQF+ +E GL+KFDFLGL+TL Sbjct: 649 NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 708 Query: 580 TLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQALE 633 T++ ++ + R + VD++ IP DD TY + G G +FQ ESSGMR+ L+ Sbjct: 709 TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLK 768 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 769 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 828 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 829 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 888 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 889 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 948 Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 949 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 1008 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F + Sbjct: 1009 VGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 1068 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + ++ L + +E+ LGFY SGHP D ++ +R++ Sbjct: 1069 PSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVREL 1116 >gi|326794450|ref|YP_004312270.1| DNA polymerase III subunit alpha [Marinomonas mediterranea MMB-1] gi|326545214|gb|ADZ90434.1| DNA polymerase III, alpha subunit [Marinomonas mediterranea MMB-1] Length = 1156 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1049 (40%), Positives = 631/1049 (60%), Gaps = 48/1049 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF+HL++H+ +SL++G + + +L + A + PA+AITD NNL + F + A GI+P Sbjct: 3 SFIHLRLHTEFSLVDGLVKVKGLLGETEAQKMPAVAITDENNLCGFVRFYKGAMDKGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G + ++ Q +++ + + LL + +GY+ +IE++S+ Y L Q + Sbjct: 63 ICGADVILEEQGEVEVRTR----------LTLLAMSNKGYKNVIEVISKGYQLGQHEGRP 112 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 + +W++E +E +I L+GG G I ++ A+K L + +F DR Y+ ++R Sbjct: 113 IVQRAWVEE-HSEDVIALSGGVQGDIGFLLSKYKTEEAKKYLDYWMSVFPDRFYLEMERT 171 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G + Y + V+ LA P+VATN+ FL +ED+EAH+ + + S + R R Sbjct: 172 ARAGEEDYIHT-VIPLASEASCPVVATNDVRFLKKEDFEAHEARVCIHDSVTLDDPRRKR 230 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDDI 303 + + Y K+ +EM ++F D+PEALENTVEIA+RC+ + + LP + + DD Sbjct: 231 RYSEEQYFKSAAEMEAVFEDIPEALENTVEIAKRCNVDVLLGKYFLPDYPVPDGMTMDDF 290 Query: 304 QKEEENELRNKAVAG-LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 NEL +K + LEV + + Q+Y RLDFELN+I +M F GYFLIV D Sbjct: 291 F----NELSHKGLQDRLEVLIKKDGDRIANRRQEYLDRLDFELNIINQMGFPGYFLIVMD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 347 FIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD+VI YV YG + V+QIITFG++ AKA +RDV R PYS D+L KLIP + Sbjct: 407 CMENRDKVIDYVARTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFE 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ ++ E D ++E++ LEG+ R+ HA G+VI L+ Sbjct: 467 IGMTLK-KALEEEPALVEFIEGDEEAADVMEMAFSLEGVVRNFGKHAGGVVIAPTKLTDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y + VTQ++ +E+AGL+KFDFLGLKTLT++ +L + K +D Sbjct: 526 APLYCEEDGSGLVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWALGNINALHAKEGKPPLD 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++LI +D TY LL T +FQLES GM++ ++ + P EDIIALV+LYRPGP+ + Sbjct: 586 IALIDLEDKSTYDLLQRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVALYRPGPLGS 645 Query: 658 IVV--YNNRKNGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 +V + NRK+G+ ++ HP LI P+L+ T G+I+YQEQVMQIAQ+L+ +SL Sbjct: 646 GMVDDFINRKHGRAELAFPHPDYQHDDLI-PVLEPTYGIILYQEQVMQIAQVLAKFSLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK E M +Q+ F+ GA+KN I K + NIF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADLLRRAMGKKKPEVMAEQRLIFMEGAAKNNIDKDLGGNIFDLMEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQTAW+K HYP F+AA ++ +M N +KI F ++ R + + P+VN F Sbjct: 765 ALVSYQTAWLKNHYPAPFMAAVLSADMQNTDKIVIFIEECRAMKLTLELPNVNESVYKFT 824 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V + + Y L AIKGVG I+EA D PF+ + DFC RV +K+N+RV+E+LV + Sbjct: 825 VNEAGAVVYGLGAIKGVGEGPIEAIVEARQDGPFEHIFDFCQRV-GRKVNKRVMEALVRS 883 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFS--DKITLEKFS 944 GA D G +R L S+D K A KN ++F A E+ T + D+I ++ Sbjct: 884 GAFDTIGPNRATLFASIDEALKRADQNAKNEDAGMMDLFGVAVEESTENAYDEIGIQHEW 943 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 R + E+ LG Y +GHP+D Y+ LR+ ++ + R + LA ++V Sbjct: 944 AGRQ--RLDGEKDTLGLYVTGHPIDDYEKELRRF-VRSRIVDIQPKRDTQV-LAGLIVDM 999 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K+++G I ++T + + E FP Sbjct: 1000 RVTKSKRGGNIAFMTLDDRSARIEVTVFP 1028 >gi|170701606|ref|ZP_02892552.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10] gi|170133489|gb|EDT01871.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10] Length = 1177 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1032 (40%), Positives = 619/1032 (59%), Gaps = 60/1032 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNPDDRDKPS--RLLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL ++GL+ L+G G I AF + + A + + K+F Y+ LQR Sbjct: 114 AELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y + + +MV++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTDQYFRTQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLEKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWSL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ VG+ Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEADGKR 828 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 D +R Q+L S+ A + + H + E + DK Sbjct: 889 DSLNANRAQMLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEP-AWDDK---- 943 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000 R + E+ LGFY SGH D Y+ +R+ + + ++ G + +A + Sbjct: 944 --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGDLKEGRDKLVAGI 991 Query: 1001 VVSKQQKKTRKG 1012 + S + + T++G Sbjct: 992 IASLRTQMTQRG 1003 >gi|170723228|ref|YP_001750916.1| DNA polymerase III subunit alpha [Pseudomonas putida W619] gi|169761231|gb|ACA74547.1| DNA polymerase III, alpha subunit [Pseudomonas putida W619] Length = 1174 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1066 (39%), Positives = 613/1066 (57%), Gaps = 62/1066 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+VHS +SL++G + + + +A PA+AITD +N+ + ++F + A AGI Sbjct: 2 SVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCALVKFYKAAMGAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G L + G P + I L +GY+ L EL+SR + Q Sbjct: 62 KPICGADLWL----------AGADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 V + W+ +EGLI L+ G G I A + AE L + +F +R YV +Q Sbjct: 112 LVILQREWIAP-ASEGLIALSAGKEGDIGMALMAGRTTEAEALLHDWMGMFPERFYVEVQ 170 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R +R D V LA PLVATN+ F+ + D++AH+ + + + RP Sbjct: 171 RTNRVGDEEYVHAAVALADKVGAPLVATNDVRFIKQSDFDAHESRVCIGEGWTLDDPRRP 230 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R+ D YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I Sbjct: 231 RMYSDQQYLKSADEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360 ++ LR+ + GLE RLA Y Q Y RL FEL++I +M F GYFLIV Sbjct: 289 --DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+ Sbjct: 347 MDFIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI YV + YG V+QIITFG++ AKA +RDV R Y DRL K+IP Sbjct: 407 DFCMDGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A + R+ D + +++ KLEG+ R HA G+VI L+ Sbjct: 467 FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + K Sbjct: 526 DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKNNLPD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V++ IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ Sbjct: 586 VNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645 Query: 656 DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + NRK+G+ ++ H + P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 646 QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLIEEVRSMKLRLDAPDVNASEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V D+ RI Y L AIKGVG I+EA PF L DFC RVD K++N+R L++L+ Sbjct: 826 TVNDDGRIIYGLGAIKGVGEGPVEAIVEARDQGGPFKDLFDFCERVDLKRVNKRTLDALI 885 Query: 887 FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928 +GALD G +R LL +L+ K A+ + + H ++F Sbjct: 886 RSGALDRLGPHFHDEIKAYHASIDINRATLLSALEEAIKAAEQTARTADSGHVDLFGGLF 945 Query: 929 --HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 + +++ + + +++ R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 VEEDSDVYANHRKVRELTLKE---RLKGEKDTLGVYLTGHPIDEYEGEIRRFARQRIIDL 1002 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + I A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1003 KPSRETQTI--AGMIIAMRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|301169460|emb|CBW29060.1| DNA polymerase III alpha subunit [Haemophilus influenzae 10810] Length = 1159 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1057 (39%), Positives = 617/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E +G+I+L+GG+ G + + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R + R Q ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 168 LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+ +++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT E+DN +KI + + +++MPP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVMPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ + + K+ ++F T D Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHED-------- 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + T+KG+R+G T + + + F Sbjct: 994 TVAGLLVASRIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|145637722|ref|ZP_01793374.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittHH] gi|145269071|gb|EDK09022.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittHH] Length = 1159 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1057 (39%), Positives = 618/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E +G+I+L+GG+ G + + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R + R Q ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 168 LALSRTGRPNEERYIQAALKLAEHCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+++++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT E+DN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ + + K+ ++F T D Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHED-------- 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + T+KG+R+G T + + + F Sbjct: 994 TVAGLLVASRIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|148549377|ref|YP_001269479.1| DNA polymerase III subunit alpha [Pseudomonas putida F1] gi|148513435|gb|ABQ80295.1| DNA polymerase III, alpha subunit [Pseudomonas putida F1] Length = 1174 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1066 (39%), Positives = 609/1066 (57%), Gaps = 62/1066 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+VHS +SL++G + + + + PA+AITD +N+ S ++F + A AGI Sbjct: 2 SVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G L + G P + I L +GY+ L EL+SR + Q Sbjct: 62 KPICGADLWL----------AGADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 V + W+ +EGLI L+ G G I A AE L + +F +R YV +Q Sbjct: 112 LVILQREWIAP-ASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQ 170 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R +R D V LA PLVATN+ F+ + D++AH+ + + + RP Sbjct: 171 RTNRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRP 230 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I Sbjct: 231 RCYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360 ++ LR+ + GLE RLA Y Q Y RL FEL++I +M F GYFLIV Sbjct: 289 --DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+ Sbjct: 347 MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP Sbjct: 407 DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A + R+ D + +++ KLEG+ R HA G+VI L+ Sbjct: 467 FEVGMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + K Sbjct: 526 DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +++ IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ Sbjct: 586 LNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645 Query: 656 DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + NRK+G+ ++ H + P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 646 QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825 Query: 829 KV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886 V D RI Y L AIKGVG I+EA A PF L DFC R+D K++N+R L++LV Sbjct: 826 TVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALV 885 Query: 887 FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---- 927 +GALD G +R LL +L K A+ + H ++F Sbjct: 886 RSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMF 945 Query: 928 -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 A + +++ + + +++ R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 946 DAADVDVYANHRKVRELTLKE---RLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDL 1002 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + I A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1003 KPSRETQTI--AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|147678555|ref|YP_001212770.1| DNA polymerase III DnaE [Pelotomaculum thermopropionicum SI] gi|146274652|dbj|BAF60401.1| DNA polymerase III, alpha subunit [Pelotomaculum thermopropionicum SI] Length = 1196 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1033 (39%), Positives = 617/1033 (59%), Gaps = 30/1033 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +HS YSLL+GA +N+ + + + Q PA+AITD +F ++F + AGI+P+ Sbjct: 15 FVHLHLHSEYSLLDGAARINDAVKRASEMQMPALAITDHGVMFGTVDFYKACKKAGIKPV 74 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + M ++ + +VLL EGY+ L+ LVS M + R Sbjct: 75 LGCEVYVAPR---SMDDRTPKIDDNLSHLVLLAENEEGYRNLLNLVS-MAFIRGFYYKPR 130 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L E + GLI L+G +G + ++ A + ++ +FG + ++ LQ H Sbjct: 131 VDKELLSE-HSRGLIALSGCIAGEVSARILAGENEKARQAAGDYRDIFGPENFFLELQDH 189 Query: 190 RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G+ R+ +++++ +PLV TN+ ++ D E DVL+A+ V R + Sbjct: 190 -GFAEQRKVNREMLKIHKEMNIPLVVTNDVHYVRRGDAETQDVLLAIQTGKSVDDPGRMK 248 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + YLK+ EM +F +L AL NTVEIA RC+ ++ LP + E D Sbjct: 249 FQSEELYLKSPEEMNLLFGELSGALRNTVEIAGRCNVEIEFGKYYLPHYPVPEGYD---- 304 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L G R G ++ G ++RL++EL VI +M +S YFLIV DFI + Sbjct: 305 ADTYLAELCYQG--ARRIYGELSDGV-----KKRLEYELGVIKQMGYSAYFLIVWDFIHY 357 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++N IPVGPGRGS AGS+ AY+L IT IDPL++ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 358 ARQNGIPVGPGRGSAAGSLVAYSLGITSIDPLKYGLLFERFLNPERVSMPDIDVDFCFER 417 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E+I YV +YG +RVAQIITFG++ A+AA+RDVGRAL MPY +VDR+ KL+P + H Sbjct: 418 RGEIIDYVVRRYGADRVAQIITFGTMAARAAIRDVGRALNMPYGEVDRVAKLVPME-LHM 476 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +A+ + RE P V +L++ + LEG+ RHASTHAAG+VI PL+ +P+Y Sbjct: 477 TIEKALNESPELRELYDQRPEVRKLIDTAAALEGMPRHASTHAAGVVITPEPLTNYLPLY 536 Query: 547 RDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 + +D PV TQF M +E+ GL+K D LGL+TLT++ +L + + G ++D+ IP D Sbjct: 537 K--ATDGPVTTQFAMGTVEELGLLKMDLLGLRTLTVISDALRLIKESTGEELDIERIPVD 594 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662 D +TY +L T G+FQLESSGMR L ++P+ EDI+ALV+LYRPGP+ + +V + Sbjct: 595 DQKTYQMLARGETAGVFQLESSGMRSILRDLRPEVFEDIVALVALYRPGPLGSGMVDDFI 654 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K+G +K +HP ++P+LK+T GVI+YQEQVM+IA L+G+SL EAD+LRRAMGKK Sbjct: 655 KNKHGFKKTKYLHPRLEPILKDTYGVILYQEQVMRIASDLAGFSLGEADLLRRAMGKKKP 714 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E + + +FI GA++NG+ A IF+L+ FA YGFNKSH+AAYA++SYQTA++K + Sbjct: 715 EIIAGLRSQFIEGAARNGVDGETAGQIFDLMEYFAGYGFNKSHSAAYALVSYQTAYLKAN 774 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP++F+AA +T DN +K+ + ++ R+ I+++PP VN F V N+I + LAA+ Sbjct: 775 YPLQFMAALLTSVKDNTDKVAAYIEECRRLGIEVLPPDVNESRESFTVAGNKIRFGLAAV 834 Query: 843 KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K VG I+ A D PF DFC R+D++ +N+RVLESL+ GA D GY R QL Sbjct: 835 KNVGMGAVDSIIRAREKDGPFSDYADFCRRLDTRVVNKRVLESLIKCGAFDSLGYRRAQL 894 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSVRFENEQRVLG 960 + ++D+ AQ ++ R N ++ G T S I+ + E+ LG Sbjct: 895 MAAVDSGLALAQQSQRERENGQLSLLDFFGGSTDSVSISFPEVGEYPEDELLAMEKETLG 954 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y SGHPL Y+ L ++ E + + L ++ ++ TR+G + ++T Sbjct: 955 LYISGHPLSRYREALNRLTTVKTVEITDLPDNSEVVLGGLITDVKKINTRRGEVMAFLTL 1014 Query: 1021 SEPAKEYEANFFP 1033 + E FP Sbjct: 1015 EDLTGTVEVVVFP 1027 >gi|157826231|ref|YP_001493951.1| DNA polymerase III subunit alpha [Rickettsia akari str. Hartford] gi|157800189|gb|ABV75443.1| DNA polymerase III subunit alpha [Rickettsia akari str. Hartford] Length = 1185 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1088 (39%), Positives = 631/1088 (57%), Gaps = 89/1088 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL+L I++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTLEKIVELASSNKMPAICLADRGNLFGSLEFALYAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I K I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNI------------KYDVDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L + EGLI L + G + + + A T +++ GDR Y + R Sbjct: 111 DHITFEDLIKY-QEGLIALCCYTDGIVGKCLLAREQEQAMLFARTLQEILGDRFYFEIMR 169 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +++ E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HDLPEEQFIEDSYIKIASELSIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYPDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM IFSDLP A++NTV + RC F + P+LP F K+ E Sbjct: 230 VSENCYFRSPHEMREIFSDLPNAIQNTVNLRERCYFAAHANPPMLPNFATKDIS-----E 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + +R A GL RLA ++ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIRKDAKEGLLARLATKFKSEHISLENQEELKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKKGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYGH RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGHNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PV+L QA+ + A + + +L+ S LEGL+RH STHAA Sbjct: 465 FSAVNPVTLEQAMREVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHVSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIACTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLKQPDYLHELLKPILEETYGVVIYQEQVQRIAQILAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++ +E F+ GA N IS++ A +IF +AKFA YGFNK+HAAAY Sbjct: 705 DLLRRAMGKKIKKEMEEHEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TP 824 VISYQTA++K +Y EFL A + LE++N +KI F Q+A+ I+I+ P++N T Sbjct: 765 VISYQTAYLKANYSAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINSSEGYFTT 824 Query: 825 C----------------------VDFKVGDNR------------IYYSLAAIKGVGTTTA 850 C +D + +N I ++L AIKGV + Sbjct: 825 CHFGSALCHPRVGVDPEKTSEMKMDSRFCENNIESTGYDKEERAIIFALGAIKGVTPSFG 884 Query: 851 RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + + E A F S+ DF R+ K +N ++LE+L+ +G D +R+QL S+ + Sbjct: 885 KLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLFLSISKLL 944 Query: 910 KYA-QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 Y+ + E+ +N+ I + + S I + + +++ F E +G + S HPL Sbjct: 945 AYSTSYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAF-YEFESMGLFISNHPL 1000 Query: 969 DVYKPILRKMGI--KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPA 1024 Y+ I ++ I Y + N + LA ++ Q+K +R +R +VT S+P Sbjct: 1001 TEYQEIFSRLNILNTAYLYNNLPEGTNRVNLAGVI---QKKDSRMSARGRFVTLVLSDPE 1057 Query: 1025 KEYEANFF 1032 +E + F Sbjct: 1058 NIFELSVF 1065 >gi|122879149|ref|YP_200601.6| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae KACC10331] gi|188577178|ref|YP_001914107.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521630|gb|ACD59575.1| DNA polymerase III, alpha subunit subfamily, putative [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1196 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1008 (40%), Positives = 600/1008 (59%), Gaps = 62/1008 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFSEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ + + Sbjct: 172 RVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEARVCI 231 Query: 235 AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + V+ RPR D YLK+ EM ++F+D+P+A++NT +A+RC+ +++ LP Sbjct: 232 SSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFLP 291 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + + + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I M F Sbjct: 292 AYPVPDDETL----DSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTIINMGF 347 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R+ Sbjct: 348 PGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERV 407 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y VD Sbjct: 408 SMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVD 467 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLYR 523 + KLIPN ++L+ + + ++ +A P V L++++++LE L R Sbjct: 468 SVAKLIPN--ILGITLKDAMGEGK--DSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ D R PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQALE 633 T++ ++ + R + VD++ IP DD TY + G G +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F + Sbjct: 884 VGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + ++ L + +E+ LGFY SGHP D ++ +R++ Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVREL 991 >gi|84623509|ref|YP_450881.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367449|dbj|BAE68607.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1196 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1008 (40%), Positives = 600/1008 (59%), Gaps = 62/1008 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQ-AGHANLFALAGRDS-LAGRLFSEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ + + Sbjct: 172 RVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEARVCI 231 Query: 235 AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + V+ RPR D YLK+ EM ++F+D+P+A++NT +A+RC+ +++ LP Sbjct: 232 SSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFLP 291 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + + + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I M F Sbjct: 292 AYPVPDDETL----DSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTIINMGF 347 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R+ Sbjct: 348 PGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERV 407 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y VD Sbjct: 408 SMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVD 467 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLYR 523 + KLIPN ++L+ + + ++ +A P V L++++++LE L R Sbjct: 468 SVAKLIPN--ILGITLKDAMGEGK--DSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ D R PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQALE 633 T++ ++ + R + VD++ IP DD TY + G G +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F + Sbjct: 884 VGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + ++ L + +E+ LGFY SGHP D ++ +R++ Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVREL 991 >gi|319790471|ref|YP_004152104.1| DNA polymerase III, alpha subunit [Thermovibrio ammonificans HB-1] gi|317114973|gb|ADU97463.1| DNA polymerase III, alpha subunit [Thermovibrio ammonificans HB-1] Length = 1150 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1020 (40%), Positives = 624/1020 (61%), Gaps = 28/1020 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +HS YS+L+GA+ + +++ K PA+AITD N+F++ E + GI+PI Sbjct: 7 FVHLHLHSQYSILDGAIKVKDLVKKAKELGMPAVAITDHGNMFASYELYKACKEEGIKPI 66 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I G+ + ++LL +G + L++L S + + R Sbjct: 67 IGQEFYIAKGSRFDRKKGGEGEKGSY-HLILLAKNDKGLKNLMKL-STIGFTEGFYYKPR 124 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ +EGLI L+ G + + + A + +K+LFG+ Y+ LQ H Sbjct: 125 IDKEVLEKY-SEGLIALSACIQGEVPLLYLMGKEEEARRAAQWYKELFGEDFYLELQYHG 183 Query: 191 GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 ++ + ++ +++LA ++ LVATN++ +L++ED+EAHDVL+ + +S + R R Sbjct: 184 IPEQKKANEFLIKLAKELDIELVATNDAHYLNKEDWEAHDVLLCLQTGKKLSDEKRMRFP 243 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKECDDIQK 305 + + Y+K+ EM+ +F ++P+A+ NT++IA + L+ +LP++ E Sbjct: 244 SREFYVKDAQEMLEVFKEVPQAVFNTLKIAEKVEERLETFENKGYLLPKYEVPEGHTY-- 301 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 ++ LR A GLE R + I G Q Y +RL+ EL +I M F GYFLIV DFI Sbjct: 302 --DSFLRKLAEEGLERRFKEQGITDGEKKQVYYERLNHELKIINDMGFPGYFLIVWDFIN 359 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+N IPVGPGRGS AGS+ AYA+ ITDIDP+RF+LLFERFLNP+R++MPD D+D CQD Sbjct: 360 WAKRNGIPVGPGRGSAAGSLVAYAIGITDIDPIRFNLLFERFLNPERVTMPDIDVDICQD 419 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI+YV+ KYG ++V QIITFG+++ K +RDVGR L +P +VD+L KLIP+D A Sbjct: 420 GRDRVIQYVREKYGEDKVCQIITFGTMKTKMVIRDVGRVLGIPPKEVDKLAKLIPDD-AK 478 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V A+ RE D ++ RL++I+++L+GL R HAAG+VI L+ +P+ Sbjct: 479 SVE-DAVERAPEIRELAEKDETIARLIKIAKRLQGLARQTGVHAAGVVIAPETLTDYIPL 537 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 + D+ TQ++M +E GL+K DFLGLKTLT++ +++ + +R GV++ + +P D Sbjct: 538 AKSKDGDI-TTQYDMGQVEALGLLKMDFLGLKTLTIIDRTIKLIKERHGVEIVPTKLPLD 596 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662 D ET+ LL + T+G+FQLES GMR ++ ++P EDIIALV+LYRPGP+++ + Y Sbjct: 597 DPETFKLLQSGNTVGVFQLESRGMRNLMKRLKPSVFEDIIALVALYRPGPLNSGMAESYI 656 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+E++ I P ++P+LKET G+ IYQEQ+MQIA +L+GYSL EAD+LRRAMGKK K Sbjct: 657 RRKHGQEEVDYIFPELEPVLKETYGLFIYQEQIMQIANILAGYSLGEADLLRRAMGKKKK 716 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E M++Q+ F+S A + G + +F+ +AKFA+YGFNKSH+AAY ++Y TA++K H Sbjct: 717 EIMEEQRSIFVSRAVERGYPREKIEKLFDDIAKFAEYGFNKSHSAAYGFLAYVTAYLKAH 776 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP E A M+++ D ++I KF +D ++ I ++PP +N F++ I + LA I Sbjct: 777 YPKELFATMMSIDFDKTDEIVKFIKDCKENGINVLPPDINRSGAYFEIEGEAIRFGLAGI 836 Query: 843 KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 KGVG A HI E + F L DFC RVD K +NR+V+E+L+ AGA D G +R Sbjct: 837 KGVGEKAALHIEEVRKEGGEFKDLFDFCRRVDLKVVNRKVIEALIKAGAFDSTGINRASN 896 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENEQRVL 959 L +LD AQ ++K+++ ++F G + +E VE V+ E E++ + Sbjct: 897 LAALDRAMNAAQSIQKSQSKGLLSLF----GEAESIVQVEFPEVEEWPERVKLEYERQAI 952 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFY SGHPL +K I+ + E G + LA + + ++T++G W T Sbjct: 953 GFYLSGHPLLEFKEIV-TLAFDSTAEKEEWKDGQELTLAGAITDVKLRRTQRGDL--WAT 1009 >gi|167032174|ref|YP_001667405.1| DNA polymerase III subunit alpha [Pseudomonas putida GB-1] gi|166858662|gb|ABY97069.1| DNA polymerase III, alpha subunit [Pseudomonas putida GB-1] Length = 1174 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1067 (39%), Positives = 609/1067 (57%), Gaps = 64/1067 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+VHS +SL++G + + + +A PA+AITD +N+ S ++F + A AGI Sbjct: 2 SVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G L + G P + I L +GY+ L EL+SR + Q Sbjct: 62 KPICGADLWL----------AGADPEAPLSRICFLAMNPQGYRNLTELISRGWTDGQRNG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 V + W+ +EGLI L+ G G I A A+ L + +F +R YV +Q Sbjct: 112 LVILQREWIAP-ASEGLIALSAGKEGDIGMALLNGRDDEAQALLQDWMGMFPERFYVEVQ 170 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R +R D V LA PLVATN+ F+ + D++AH+ + + + RP Sbjct: 171 RTNRARDEEYVHAAVALADKFGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRP 230 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I Sbjct: 231 RGYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI-- 288 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360 ++ LR+ + GLE RLA Y Q Y RL FEL++I +M F GYFLIV Sbjct: 289 --DDYLRHVSYEGLEERLAVLWPKDTTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+ Sbjct: 347 MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP Sbjct: 407 DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A + R+ +D + +++ KLEG+ R HA G+VI L+ Sbjct: 467 FEVGMTLE-KAYEQEEILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + K Sbjct: 526 DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKNNLPD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +++ IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ Sbjct: 586 LNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645 Query: 656 DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + NRK+G+ ++ H + P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 646 QSGMVDDFINRKHGRAELAYPHADYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825 Query: 829 KV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886 V D RI Y L AIKGVG I+EA A PF L DFC R+D K++N+R L++LV Sbjct: 826 TVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCDRIDLKRVNKRTLDALV 885 Query: 887 FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +GALD G +R LL +L K A+ + H ++F Sbjct: 886 RSGALDRLGPHFHDEIKAYQANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLF---- 941 Query: 932 GTFSDKITLEKFSVENS------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 G+ D+ ++ ++ R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 942 GSMFDEAQVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIID 1001 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + I A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1002 LKPSRETQTI--AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|104783180|ref|YP_609678.1| DNA polymerase III subunit alpha [Pseudomonas entomophila L48] gi|95112167|emb|CAK16894.1| DNA polymerase III, alpha chain [Pseudomonas entomophila L48] Length = 1174 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1069 (39%), Positives = 614/1069 (57%), Gaps = 68/1069 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL+VHS +SL++G + + + +A PA+AITD +N+ S ++F + A AGI Sbjct: 2 SVSFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G L + D+ + P + I L +GY+ L EL+SR + Q Sbjct: 62 KPICGADLWLAGADS-------EAP---LSRICFLAMNPKGYRNLTELISRGWTDGQRNG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 V I W+ +EGLI L+ G G I A AE L + +F +R YV +Q Sbjct: 112 LVIIQRDWIAP-ASEGLIALSAGKEGDIGMALMAGRQAEAEVLLGDWMGMFPERFYVEVQ 170 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R +R D V LA PLVATN+ F+ + D++AH+ + + + RP Sbjct: 171 RTNRAGDEEYVHAAVALADQFGAPLVATNDVRFVKQSDFDAHETRVCIGEGWTLDDPRRP 230 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I Sbjct: 231 RGYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNITVQLGKYFLPDFPTPNGMGI-- 288 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360 ++ LR+ + GLE RLA Y Q Y RL FEL++I +M F GYFLIV Sbjct: 289 --DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+ Sbjct: 347 MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDV 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP Sbjct: 407 DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A + R+ +D + +++ KLEG+ R HA G+VI L+ Sbjct: 467 FEVGMTLE-KAYEQEEILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + K Sbjct: 526 DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQKKNNLPD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V++ IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ Sbjct: 586 VNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPL 645 Query: 656 DNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + NRK+G+ ++ H + P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 646 QSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKF 825 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886 V D RI Y L AIKGVG I+EA A PF L DFC R+D K++N+R L++L+ Sbjct: 826 TVNDEGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALI 885 Query: 887 FAGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +GALD G +R LL +L K A+ + H ++F Sbjct: 886 RSGALDRLGPHFHDEIKAYQANIDINRATLLSALGEAVKAAEQAAHTADSGHVDLF---- 941 Query: 932 GTFSDKITLEKFSVENS------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 G+ D+ ++ ++ R + E+ LG Y +GHP+D Y+ +R+ + Sbjct: 942 GSMFDEADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFA----RQ 997 Query: 986 SVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++ + +A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 998 RIVDLKPARDTQTIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|313672076|ref|YP_004050187.1| DNA polymerase iii, alpha subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312938832|gb|ADR18024.1| DNA polymerase III, alpha subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 1154 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1035 (40%), Positives = 629/1035 (60%), Gaps = 39/1035 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 KS FVHL +HS YSLL+GA+ +N ++DK+ A+A+TD ++ ++F +KA A Sbjct: 2 KSRDFVHLHLHSQYSLLDGAIQINKMMDKLKKFGSSAVAVTDHGTMYGVVDFYKKAIANN 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PIIGC++ + D+ K N K ++LL +G + L LVS + L+ Sbjct: 62 IKPIIGCEVYV-APDDRKNRNYEKGEDKNY-HLILLAKNNKGLKNLQYLVS-LAQLEGFY 118 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVN 185 RI L + +EGLI L+ +G I R + A K ++ + Y+ Sbjct: 119 YKPRIDKELLAKY-SEGLIGLSACLAGEIPRYVIRGDLKEAVKSAKEYEDILSKGNFYLE 177 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ + R +++ + H++P+VATN+ +L + D+ AH +LM + T +S +D Sbjct: 178 LQENGIPEQRIVNRELISIGKNHDIPIVATNDCHYLEKGDHVAHQILMCIQMQTTISNRD 237 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + D Y+K+ EM FS++PEA NT++IA C+ + + LP + + + Sbjct: 238 KLEFHSDQLYVKSPEEMWEAFSEIPEACLNTLKIAEECNVTIDLGKLHLPHYKVPKGYTV 297 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ + A GL RLA+ I H + Y RL+FEL VI ++GY+LIV DF Sbjct: 298 ----ESYFEHLARTGLHRRLAR--IPADEHKK-YIDRLNFELKVIIEKNYAGYYLIVWDF 350 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I ++K+N IPVGPGRGSGAGS+ AYAL ITDIDP++F+LLFERFLNP+R SMPDFDIDFC Sbjct: 351 INYSKENGIPVGPGRGSGAGSLVAYALGITDIDPIKFNLLFERFLNPERKSMPDFDIDFC 410 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RRDEVI+YV +KYG++RVAQI+TFG L A+ +RDVGR L++P VD++ K+IP P Sbjct: 411 KNRRDEVIKYVIDKYGNDRVAQIVTFGQLLARGVIRDVGRVLEIPLKTVDKVAKMIPEAP 470 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ DD + + LL ++KLEGL R HAAGIVI D+PL + V Sbjct: 471 GMTLE-KALKDDPDLEKNIKQIEKGEELLTNARKLEGLLRQTGMHAAGIVISDKPLIEYV 529 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602 P+ + ++D +TQ+ +E+ GL+KFDFLGLK LT++ ++ + +R D++ IP Sbjct: 530 PLCKG-QNDEVLTQYEKNTLEEIGLVKFDFLGLKNLTVIDDTVKLIRRRYNNNFDINSIP 588 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 +D +TY LL+ T G+FQLES+GM+ L+ ++P+ EDIIALV+LYRPGPI + ++ Sbjct: 589 LNDKKTYELLSNGETTGVFQLESAGMKNLLKKLRPNKFEDIIALVALYRPGPIGSGMLDD 648 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK+G++K+ P ++P+L++T G+I+YQEQVMQIAQ+++GYSL AD+LRRAMGKK Sbjct: 649 FVKRKHGEQKVTYFLPELEPILQDTYGIIVYQEQVMQIAQVIAGYSLGSADLLRRAMGKK 708 Query: 721 IKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 EEM K KE F I GA K G IA IF L+ KFA+YGFNKSH+AAYA+I Sbjct: 709 KPEEMQKHKEIFLYGSEELKIEGAKKRGFDLKIAEEIFNLMEKFAEYGFNKSHSAAYALI 768 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQTA++K HYPVE+++ ++ E+D EK+ F ++ ++ I+++PP++N DF + + Sbjct: 769 SYQTAYLKAHYPVEYMSQLLSSELDKGEKVVVFIEECKRMGIKVLPPTINKSSKDFIIDE 828 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 N I + L AIK VG + I+ A D F S+ DFCSRVD + +N+RV+ESL+ G D Sbjct: 829 NSIRFGLGAIKNVGFSAIESIVAAREDGEFKSIYDFCSRVDLRTVNKRVVESLIKTGVFD 888 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNR----TNKHENI-FAHEKGTFSDKITLEKFSVEN 947 FG R LL LD + Q +KNR T E + + + + D L++F E+ Sbjct: 889 EFGKKRKVLLNVLDAAIEEGQRKQKNREIGITTVEELLGISDTEEYYPD---LDEFQ-EH 944 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 ++ E E +LGFY + HPL Y IL + I G E ++ + ++ + + Sbjct: 945 DILKMEKE--LLGFYLTNHPLSSYSNILSTLTI-GSNELELMEEEKDVVVGGIIKNIKTH 1001 Query: 1008 KTRKGSRIGWVTFSE 1022 R G ++ +VT + Sbjct: 1002 LARTGEKMAFVTLED 1016 >gi|239906002|ref|YP_002952741.1| DNA polymerase III alpha subunit [Desulfovibrio magneticus RS-1] gi|239795866|dbj|BAH74855.1| DNA polymerase III alpha subunit [Desulfovibrio magneticus RS-1] Length = 1154 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1040 (40%), Positives = 615/1040 (59%), Gaps = 35/1040 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL H+ YSLL+GA+ + +++ + PA AITD NL AL F A A ++ Sbjct: 2 PDFVHLHCHTEYSLLDGAIRIGDLVKTAKSFNSPAAAITDHGNLHGALIFYDAAKKAELK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + + + + P +VLL GY+ L++L + + + Sbjct: 62 PIIGCEVYVS-----PTSRRDRDPRTPRYHLVLLAQNMTGYKNLLKLATLGHT-EGMYYK 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ L + G EGLI L+ G I++ A + LF DR Y+ +Q Sbjct: 116 PRVDKELLGQYG-EGLIALSACIKGEINQKLLKEGKDQARAMAKEYASLFPDRFYLEIQA 174 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ + ++ L+ LPLVATN+ +L +D EAHDVL+ + + V R R Sbjct: 175 NEIPEQAIINDFLIDLSDDMGLPLVATNDCHYLRADDAEAHDVLLCIQTAACVDDVKRMR 234 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKECDDI 303 T D Y ++ EM + F+ +P+A+ N+ EIA R + L+ H P+ K D++ Sbjct: 235 FTTQDLYYRSPDEMAAAFAHVPQAIANSCEIAERINLQLKFGDYHFPVYKSPPGKSLDEV 294 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + + A GL RL++ +G + Y RL+ EL+VI +M F GYFLIV DF Sbjct: 295 -------MADLARKGLTERLSK---MQGADPKRYWDRLELELDVIKQMGFPGYFLIVQDF 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK + IPVGPGRGS AGS+ AYAL IT++DPL + LLFERFLN +R+SMPD D+DFC Sbjct: 345 INWAKNHGIPVGPGRGSAAGSLVAYALRITNLDPLPYDLLFERFLNIERVSMPDIDVDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVIRYV YG E VAQI TFG+++AKA +RDVGRAL M + + DR+ KLIP D Sbjct: 405 ERRRHEVIRYVTEHYGEEAVAQITTFGTMKAKAVVRDVGRALGMSFGETDRIAKLIPEDL 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+A + + D V +L+++S++LEGL RHASTHAAG+V+ D +++ V Sbjct: 465 KMTID-KALAQEPELKTLMAQDGRVAKLIDVSRRLEGLARHASTHAAGVVVSDTAMTEYV 523 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIP 602 P+Y+ +++ VTQ++MK +EKAGL+KFDFLGLKT+T++ +L + + G + DL +P Sbjct: 524 PLYKG-KNNETVTQWDMKRVEKAGLVKFDFLGLKTMTVIDDTLQIIREMGEEPPDLDTLP 582 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 F D TY L T GIFQ+ES GMR+ L ++P+C EDIIA+++LYRPGP+ + +V Sbjct: 583 FTDEATYELFAKGDTDGIFQVESQGMRKYLRMLKPNCFEDIIAMLALYRPGPLGSGMVEL 642 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK+G++ + HPL++ LK T GVI+YQEQVM+IAQ+L+ +SL D+LRRAMGKK Sbjct: 643 FIRRKHGEDPVEYPHPLLEETLKPTYGVIVYQEQVMKIAQVLANFSLGAGDLLRRAMGKK 702 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM KQ+ F+ G ++N I + A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K Sbjct: 703 NAEEMGKQRGFFVEGCAQNDIPEKKANEIFDLMEKFAEYGFNKSHSAAYALISYHTAYLK 762 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPV F+AA MT +M+N +K+ ++ R ++ ++PP VN F V DN+I Y LA Sbjct: 763 AHYPVAFMAALMTSDMENQDKLLQYIAACRDNDLTLLPPDVNAGYPHFSVKDNKILYGLA 822 Query: 841 AIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A+K VG I+ A + PF SL DF SRV+ +K+ +RV+E L+ GA D FG +R Sbjct: 823 AVKNVGRDAVAEIVAAREEGGPFTSLLDFTSRVNMRKITKRVIEYLIKCGACDSFGCTRA 882 Query: 900 QLLQSLDNIQKYAQ--WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN--- 954 L LD Q EKN EK + + L E E Sbjct: 883 GLAAGLDQAAAIGQRRAAEKNDGRLSLMTLMPEKPKPTVGLGLSCAEAELPEWHHEEMMA 942 Query: 955 -EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LGFY + HPL Y+ LR M + + G ++LA + VS ++ T+KG Sbjct: 943 FEKEALGFYLTSHPLLAYERDLRAMRLTTIAQCDGMEPGVEVKLACICVSTKEIITKKGQ 1002 Query: 1014 RIGWVTFSEP-AKEYEANFF 1032 ++ + + E EA F Sbjct: 1003 KMAFCKLEDHLGGEAEAVVF 1022 >gi|221211665|ref|ZP_03584644.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD1] gi|221169026|gb|EEE01494.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD1] Length = 1179 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1032 (40%), Positives = 619/1032 (59%), Gaps = 60/1032 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A + G++ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNPDDRDKPS--RLLLLVKNKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL+ +EGL+ L+G G I A + + A + + K+F Y+ LQR Sbjct: 114 AELDARWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 SQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+S+ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGD 832 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N P + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPDGKR 828 Query: 833 NR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +R I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 D +R QLL S+ + A + + H + E + DK Sbjct: 889 DSLNANRAQLLASVPLAMEAAEQAEANALQAGLFDMGAESPHAHALVDEP-AWDDK---- 943 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000 R + E+ LGFY SGH D Y+ +R+ + + ++ G + +A + Sbjct: 944 --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKIGELKEGRDKLVAGI 991 Query: 1001 VVSKQQKKTRKG 1012 + S + + T++G Sbjct: 992 IASLRTQMTQRG 1003 >gi|121594197|ref|YP_986093.1| DNA polymerase III subunit alpha [Acidovorax sp. JS42] gi|120606277|gb|ABM42017.1| DNA polymerase III, alpha subunit [Acidovorax sp. JS42] Length = 1187 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/996 (41%), Positives = 587/996 (58%), Gaps = 54/996 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ ++ A D QPA+AITD NNLF A++F ++ G++PI Sbjct: 10 FVHLRLHTEFSVVDGTTRIDEVVKAAAKDGQPALAITDLNNLFGAIKFYKEGRGKGVKPI 69 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +G ++ ++ + PS +VLLV GY L EL++R + + + Sbjct: 70 LGAEIYLEAEA------------AGAPSRMVLLVQNRTGYLNLSELLARAWTRNIVRNQA 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 WLQE+G +GLI L G +GP+ +A A + L +F R Y+ +QR Sbjct: 118 LCTWEWLQELG-DGLIALAGAQAGPVGQALMKGDDAGAAQLALRLAGIFPHRFYLEVQRA 176 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247 R D + VQLA LP+VAT+ F + +DYEAH+ + +A +++ R R Sbjct: 177 GRPDDEAHVTAAVQLAARLALPVVATHPVQFATPDDYEAHEARVCIAEGEILANPRRVRR 236 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y K+ +EM ++F+D+P AL NTVE+A+RC+ L + P LP F + Sbjct: 237 FTREQYFKSSAEMEALFADVPSALANTVEVAKRCNVSLVLGKPQLPNFPIPGGMTM---- 292 Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E R+ + GLE RL + Y++RL+FEL I +M F GYFLIV DFI Sbjct: 293 EQYFRHASHEGLEERLLHLYPDTAERDRQRPRYQERLEFELGTILKMGFPGYFLIVGDFI 352 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 QWAKKN PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 353 QWAKKNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQ 412 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP- 483 RD VI YV++KYG E V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 413 ANRDRVIDYVKDKYGKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPG 472 Query: 484 -----AHPVSLQAIADDSRFR--------EARLADPSVDRLLEISQKLEGLYRHASTHAA 530 A+P + D + + E + V ++E++QKLEG+ R+ HA Sbjct: 473 QTYTLAYPPEPKKEGDKNNYALELEPILYERVRKEEDVRTIIEMAQKLEGMTRNIGMHAG 532 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ Sbjct: 533 GVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIM 592 Query: 591 QRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 QR + IP DD TY L + T +FQ ES GM+ L+ +P +ED+IAL Sbjct: 593 QRHKGQENFAFENIPLDDAATYKLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALN 652 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 653 ALYRPGPMDLIPSFVNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSL 712 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM + + F GA++ GIS+ A +F+L+ KFA YGFNKSHAA Sbjct: 713 GGADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAA 772 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCV 826 AY++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + F + PP +N Sbjct: 773 AYSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGMTFEPPDINRGNY 832 Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIMEA----------SADKPFDSLEDFCSRVDSK 875 F+ V D I Y L A+KG G I+ A + PF SL DFC RVD Sbjct: 833 RFEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGQGVGPQGATRGPFKSLFDFCVRVDRT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENIFAHEKGT 933 ++N+R +E+L+ AGA D +R L+ SLD ++ AQ N+ + + G+ Sbjct: 893 RVNKRTVEALIKAGAFDALQLNRAALVASLDRAFEFANAQIANANQGGLFDMMGDDAIGS 952 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + + L R E+ +GFY SGH D Sbjct: 953 STQEPDLVDVMPWGIKERLMQEKTAVGFYLSGHLFD 988 >gi|258405519|ref|YP_003198261.1| DNA polymerase III, alpha subunit [Desulfohalobium retbaense DSM 5692] gi|257797746|gb|ACV68683.1| DNA polymerase III, alpha subunit [Desulfohalobium retbaense DSM 5692] Length = 1159 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1042 (40%), Positives = 618/1042 (59%), Gaps = 36/1042 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL H+ YSLL+GA+ + ++ + ++AI+D NLF AL+F A G++PI Sbjct: 4 FTHLHCHTEYSLLDGAIRIGDLCQQAVDFGFSSVAISDHGNLFGALDFYLTAKKFGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + D + T + +VLL GY L+ LVSR +L + R Sbjct: 64 IGCEVYVAPGD--RRTKHTDKDIRSGYHLVLLAQNLTGYYNLVRLVSRGWL-EGFHYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + EGLI L+ G + + + LF R Y+ LQ + Sbjct: 121 VDKELLSQW-NEGLIALSACLKGEVPYGLRHEGMSRGKALAEEYSALFPGRFYLELQANG 179 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 ++ Q+++LA T +LPLVATN+ +LS D EAHD+L+ + + KDR R Sbjct: 180 IPEQVTLNEQLLELAETTKLPLVATNDCHYLSYNDVEAHDILLCIQTNAQYYAKDRMRFD 239 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y + EM F+ P+ALEN IAR C+ L + P + + +++E Sbjct: 240 TQELYYRPPEEMEQAFAHCPQALENVGAIARNCNVELDLGQNYFPVYDVPQGRTLEEEFI 299 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 +R GL RLA+ + + Y QRLD EL+VI F YFLIV DFI WAK Sbjct: 300 RLVRE----GLRTRLAK--LPYTVDEEVYWQRLDTELDVICAKGFPAYFLIVQDFINWAK 353 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + IPVGPGRGS AGS+ AY L IT++DPLR++LLFERFLN +R SMPD D+DFC +RR+ Sbjct: 354 EQGIPVGPGRGSAAGSLVAYCLGITNLDPLRYNLLFERFLNVERASMPDIDVDFCYNRRE 413 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVIRYV KYG E VAQI TFG+++AKA +RDVGRAL + +++ D++ KL+P+D Sbjct: 414 EVIRYVTAKYGKESVAQITTFGTMKAKAVVRDVGRALGLSFAETDKIAKLVPDD------ 467 Query: 489 LQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGD-RPLSQL 542 L+ D + +E LA D +V +L+++S++LEGL RHASTHAAGIVI D PL Sbjct: 468 LKMTIDKALEQEPDLAALAENDETVAKLIDVSRRLEGLARHASTHAAGIVISDSHPLEDH 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601 +P+Y + ++ VTQF+MK +EK GLIKFDFLGLKTLT++ +L Q G V D+ + Sbjct: 528 LPLYLGKKGEV-VTQFDMKKVEKVGLIKFDFLGLKTLTVIADTLHLAQQAGKSVPDIDTL 586 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D T+ LL T G+FQLESSGMR ++ +QP EDIIAL++LYRPGP+++ +V Sbjct: 587 PLEDEATFALLCRTETDGVFQLESSGMRNVIKDLQPTSFEDIIALLALYRPGPLESGMVT 646 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK+G+ + HPL++P+L+ T GVI+YQEQVM+IA ++ YSL + D+LRRAMGK Sbjct: 647 DFIRRKHGEIPVEYPHPLLEPILEATYGVILYQEQVMRIASDMANYSLGDGDILRRAMGK 706 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K M +Q+ +F++GA +N I + A IF+L+ KFA YGFNKSH+AAYA++SYQTA++ Sbjct: 707 KDPSVMAEQRTKFVNGAKENEIDEATATYIFDLMEKFAGYGFNKSHSAAYALVSYQTAYL 766 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYPVEF+AA +T E+ N +K+ R+ I+++PP VN F V + ++ + L Sbjct: 767 KAHYPVEFMAALITSEVSNTDKVIAHINACREMGIEVLPPDVNHSERHFTVENEKLRFGL 826 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 + +K VG ++ E + P+ SL DFC RV S+K+ +RVLESL+ +GA+D G SR Sbjct: 827 SGVKNVGGGAIEALVAERRRNGPYASLLDFCKRVGSRKVTKRVLESLIKSGAMDSLGCSR 886 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-------R 951 LL +LD + AQ ++++ ++ A S ++ +E + V R Sbjct: 887 ASLLAALDKVVSTAQRQSRDKSRGQLSLMAMMGEEDSCVLSGIGMDIEEAQVEEWDDEKR 946 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + E+ LGF+ SGHPL ++ L++ + ++ +R A +V ++ T+K Sbjct: 947 LQYEKEALGFFLSGHPLLRFREELKRQRLLSLQDCGELGGDTEVRTAVLVTGVKEHVTKK 1006 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G R+ + + E FP Sbjct: 1007 GGRMAFCQIEDLTGTGEMTMFP 1028 >gi|206560768|ref|YP_002231533.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia J2315] gi|198036810|emb|CAR52710.1| putative DNA polymerase III alpha subunit [Burkholderia cenocepacia J2315] Length = 1177 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1028 (40%), Positives = 616/1028 (59%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + +++I+ AAD Q A+A+TD N F + F Q+A GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC + I D+ ++ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGCDVWIANPDDRDKPSR----------LLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL +GL+ L+G G I A + + A + + ++F Y+ LQR Sbjct: 114 AELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y + + +M ++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTDQYFRTQDDMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLETRLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +K F L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945 D +R QL+ S+ + A E N E+ AH L Sbjct: 889 DSLNPNRAQLIASVPLAMEAADQAEANAMQAGLFDMGAESPHAH---------ALVDEPA 939 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + R + E+ LGFY SGH D Y+ +R+ + V ++ G + +A ++ S Sbjct: 940 WDDKRRLQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKVGDLKEGRDKLVAGIIASL 995 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 996 RTQMTQRG 1003 >gi|222111091|ref|YP_002553355.1| DNA polymerase iii subunit alpha [Acidovorax ebreus TPSY] gi|221730535|gb|ACM33355.1| DNA polymerase III, alpha subunit [Acidovorax ebreus TPSY] Length = 1179 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/996 (41%), Positives = 587/996 (58%), Gaps = 54/996 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ ++ A D QPA+AITD NNLF A++F ++ G++PI Sbjct: 2 FVHLRLHTEFSVVDGTTRIDEVVKAAAKDGQPALAITDLNNLFGAIKFYKEGRGKGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +G ++ ++ + PS +VLLV GY L EL++R + + + Sbjct: 62 LGAEIYLEGEA------------AGAPSRMVLLVQNRTGYLNLSELLARAWTRNIVRNQA 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 WLQE+G +GLI L G +GP+ +A A + L +F R Y+ +QR Sbjct: 110 LCTWEWLQELG-DGLIALAGAQAGPVGQALMKGDDAGAAQLALRLAGIFPHRFYLEVQRA 168 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247 R D + VQLA LP+VAT+ F + +DYEAH+ + +A +++ R R Sbjct: 169 GRPDDEAHVTAAVQLAARLALPVVATHPVQFATPDDYEAHEARVCIAEGEILANPRRVRR 228 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y K+ +EM ++F+D+P AL NTVE+A+RC+ L + P LP F + Sbjct: 229 FTREQYFKSSAEMEALFADVPSALANTVEVAKRCNVSLVLGKPQLPNFPIPGGMTM---- 284 Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E R+ + GLE RL + Y++RL+FEL I +M F GYFLIV DFI Sbjct: 285 EQYFRHASHEGLEERLLHLYPDTAERDRQRPRYQERLEFELGTILKMGFPGYFLIVGDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 QWAKKN PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 345 QWAKKNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQ 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP- 483 RD VI YV++KYG E V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 405 ANRDRVIDYVKDKYGKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPG 464 Query: 484 -----AHPVSLQAIADDSRFR--------EARLADPSVDRLLEISQKLEGLYRHASTHAA 530 A+P + D + + E + V ++E++QKLEG+ R+ HA Sbjct: 465 QTYTLAYPPEPKKEGDKNNYALELEPILYERVRKEEDVRTIIEMAQKLEGMTRNIGMHAG 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ Sbjct: 525 GVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIM 584 Query: 591 QRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 QR + IP DD TY L + T +FQ ES GM+ L+ +P +ED+IAL Sbjct: 585 QRHKGQENFAFENIPLDDAATYKLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALN 644 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 645 ALYRPGPMDLIPSFVNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSL 704 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM + + F GA++ GIS+ A +F+L+ KFA YGFNKSHAA Sbjct: 705 GGADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAA 764 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCV 826 AY++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + F + PP +N Sbjct: 765 AYSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGMTFEPPDINRGNY 824 Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIMEA----------SADKPFDSLEDFCSRVDSK 875 F+ V D I Y L A+KG G I+ A + PF SL DFC RVD Sbjct: 825 RFEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGQGVGPQGATRGPFKSLFDFCVRVDRT 884 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENIFAHEKGT 933 ++N+R +E+L+ AGA D +R L+ SLD ++ AQ N+ + + G+ Sbjct: 885 RVNKRTVEALIKAGAFDALQLNRAALVASLDRAFEFANAQIANANQGGLFDMMGDDAIGS 944 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + + L R E+ +GFY SGH D Sbjct: 945 STQEPDLVDVMPWGIKERLMQEKTAVGFYLSGHLFD 980 >gi|145634848|ref|ZP_01790556.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittAA] gi|229844610|ref|ZP_04464749.1| DNA polymerase III subunit alpha [Haemophilus influenzae 6P18H1] gi|145268014|gb|EDK08010.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittAA] gi|229812324|gb|EEP48014.1| DNA polymerase III subunit alpha [Haemophilus influenzae 6P18H1] Length = 1159 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1057 (39%), Positives = 618/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E +G+I+L+GG+ G + + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R + R Q ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 168 LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+++++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD +++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPKSFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT E+DN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ + + K+ ++F T D Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHED-------- 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + T+KG+R+G T + + + F Sbjct: 994 TVAGLLVASRIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|256827913|ref|YP_003156641.1| DNA polymerase III, alpha subunit [Desulfomicrobium baculatum DSM 4028] gi|256577089|gb|ACU88225.1| DNA polymerase III, alpha subunit [Desulfomicrobium baculatum DSM 4028] Length = 1151 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1046 (40%), Positives = 617/1046 (58%), Gaps = 47/1046 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F HL HS YSLL+GA+ L ++ + + AITD NLF ++ F +A GI+P Sbjct: 3 GFTHLHCHSEYSLLDGAIRLKDLCARAVDFGFSSAAITDHGNLFGSVPFYLEAKKHGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ I D + N+ + +VLL GY L+++VS +L + Sbjct: 63 IIGSEVYI-ADDMFERENKKRF------HLVLLAQNLIGYHNLVKIVSAGFL-EGFYYKP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ +L+ +EGLI L+ G + A + A + + ++F DR Y+ LQ Sbjct: 115 RVDKKYLR-AHSEGLICLSACLQGEVPYALRHGTFDSALLKAREYMEIFPDRFYLELQS- 172 Query: 190 RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + +E +VV +LA LPLVATN+ +L ++DYEAHD+L+ V + S+K Sbjct: 173 ---NGLKEQEVVNDRLMELANETGLPLVATNDCHYLGKDDYEAHDILLCVGTGKIASEKQ 229 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R + T + Y K EM + F+ PEA+EN IA C L++ P + E + Sbjct: 230 RLKFDTNEFYYKAPEEMEAAFAHCPEAVENAGRIADMCEVELKLKQHFFPVYDVPEGVTL 289 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E R + GL+ R+A A+ YR+RL+ EL VI F YFLIV DF Sbjct: 290 ----DQEFRRLSEEGLKERIA--ALPYEVDESVYRERLELELGVIIEKGFPAYFLIVQDF 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK NIPVGPGRGS AGS+ +YAL ITD+DP+R++L FERFLN +R SMPD D+DFC Sbjct: 344 INWAKSKNIPVGPGRGSAAGSLVSYALRITDLDPIRYALFFERFLNVERASMPDIDVDFC 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RRDEVI+YV KYG + VAQI+ FG+++AK A+RDV RAL + DR+ KLIP+D Sbjct: 404 YNRRDEVIKYVSEKYGADHVAQIVAFGTMKAKGAIRDVARALDVSLKDADRIAKLIPDDL 463 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A+ ++ R +DP +L +++++LEGL RH+S HAAGIVI +P+ + + Sbjct: 464 KMTLT-KALDEEPELRNLIDSDPQYKKLYDVARRLEGLARHSSIHAAGIVISQKPMVEYL 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIP 602 P+++ ++ VTQ +MK +E GLIKFDFLGLKTLT++ +L + + V L +P Sbjct: 523 PLHKGKNGEV-VTQLDMKKVELIGLIKFDFLGLKTLTVIDDALKLIRKNNKPVPILEKLP 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 DD +T+ LL T G+FQLES GMR+ L G++P C EDIIAL++LYRPGP+++ +V Sbjct: 582 LDDPQTFELLCRGETDGVFQLESDGMRRVLRGLKPSCFEDIIALLALYRPGPLESGMVDD 641 Query: 661 YNNRKNGKEKIV----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + RK+G K+ + P++ P+L++T GVI+YQEQVM+IA L+ YSL E D LRRA Sbjct: 642 FIGRKHGLRKVEYEFEELAPVVHPILEDTYGVILYQEQVMKIASDLAKYSLGEGDNLRRA 701 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EM KQ+ RF+ GA +N IS+ A IF+L+ KFA YGFNKSH+AAYAVISYQT Sbjct: 702 MGKKDPAEMAKQRVRFLDGARENNISQEAAEYIFDLMEKFAGYGFNKSHSAAYAVISYQT 761 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K HYP EF+AA +T E+ N +KI R +I+++PP VN +F V I Sbjct: 762 AYVKAHYPAEFMAAIITSEVSNTDKILAHVSACRDMDIEVLPPDVNRSFNEFTVEGESIR 821 Query: 837 YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L+ IKGVG I E F SL DFC RV+ +K+N+RVL+SL+ +GA+D FG Sbjct: 822 YGLSGIKGVGEGAVESIEEEREKGGDFTSLLDFCQRVNLRKVNKRVLDSLIKSGAMDSFG 881 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---------GTFSDKITLEKFSVE 946 SR LL++LD +Q AQ K +T+ + + G D+ L +F + Sbjct: 882 CSRRALLENLDKVQAMAQKRAKRKTSGQLSFMGMVEENTCNLTGLGIEDDEAALPEFG-D 940 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + R E E GF+ GHPL ++ +R++G + + +++ +V S + Sbjct: 941 DEKCRMEKE--AFGFFLIGHPLQPFRQEIRRLGYPSLAQCADLTEKSPVQVPVLVTSMKT 998 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+KG R+ + + + EA F Sbjct: 999 INTKKGDRMAFCGIEDLSGSGEAIVF 1024 >gi|319760423|ref|YP_004124361.1| DNA polymerase III subunit alpha [Candidatus Blochmannia vafer str. BVAF] gi|318039137|gb|ADV33687.1| DNA polymerase III subunit alpha [Candidatus Blochmannia vafer str. BVAF] Length = 1169 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/988 (40%), Positives = 603/988 (61%), Gaps = 42/988 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+F+HL S YS+++ +N +L+K PA+A+TD NLF ++F + GI+ Sbjct: 4 PNFIHLHTRSDYSMIDSIAKVNELLEKAKLFNMPALALTDFTNLFGLIKFHNYSYELGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G D +QD ++ F I LV ++GYQ LI+L+S+ Y Sbjct: 64 PITGS--DFCIQD----SSSDNIDFH---EITCLVINSQGYQNLIQLISKAYKYKSNTSF 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +SWLQE +GLI+L+GG +G I + + ++RL + F +R Y+ L R Sbjct: 115 PVIKMSWLQEY-NKGLILLSGGRNGDIGQYLLKDKKNKIDERLSFYNNYFPNRYYIELIR 173 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246 R Y+ ++L+ LP+VATN+ F++E+D+ AH++ +A+ VV + + Sbjct: 174 TGREYEELYLQLAIELSKIKGLPVVATNDIRFINEKDFLAHEIRVAIHDGVVVDKIQQLN 233 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + ++KN +M +F D+PE+L NTVEIA+RC+ I+ ++ LP+F Sbjct: 234 KYSKQQFMKNAQDMCLLFKDVPESLTNTVEIAQRCNCIINLNGSFLPKFPTGSI-----S 288 Query: 307 EENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 EN L A GLE RL + + + Y +RL EL+VI +M F GYFLIV +F Sbjct: 289 IENFLIKFAQKGLEKRLLHLFPDDKKRYINRKPYDERLSHELHVIIQMGFPGYFLIVMEF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK N IPVGPGRGSGA S+ AY LTIT++DP++F LLFERFLNP+R+SMPD DIDFC Sbjct: 349 IQWAKNNKIPVGPGRGSGASSLVAYVLTITELDPIKFDLLFERFLNPERISMPDLDIDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RD VI +V YG VAQIITFG++ AKA +RDVGRAL PY+ ++ + KLIP+ Sbjct: 409 MEHRDLVIDHVVKTYGSCAVAQIITFGTMAAKAVIRDVGRALGYPYTFINSIAKLIPSKI 468 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +S Q+ A DS+ + + + +L+++S +LEGL R+ S HA G+VI ++ Sbjct: 469 GITLS-QSYATDSQLKLMYDNNEEIKKLIDLSLQLEGLIRNVSKHAGGVVIAPSKITDFS 527 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D P+TQF+ IE+ GLIKFDFLGL+TLT++ +SL + +K +D+ Sbjct: 528 PLYYDSDHTHPMTQFDKNDIERIGLIKFDFLGLRTLTVIDRSLKMINNLRLKSCLSIIDI 587 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + I +D E++ +L T T GIFQLES G++ ++ ++PDC ED+IAL++L+RPGP+ + Sbjct: 588 NQISLNDQESFDVLQTSKTTGIFQLESRGIKALIKRLKPDCFEDLIALIALFRPGPLQSG 647 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N NRK+G E I H + P+LK T G+I+YQEQVMQIAQ+L+GY+ +AD Sbjct: 648 MVDNFINRKHGYEAIYYPDSQWEHKSLRPVLKSTYGIILYQEQVMQIAQVLAGYTPGKAD 707 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRA+GKK E+M KQ+ FI GA +NGI K ++ IF+L+ KFA YGFNKSH+ AYA+ Sbjct: 708 ILRRAIGKKKPEDMAKQRSIFIDGAVRNGIDKILSKKIFDLMEKFAGYGFNKSHSVAYAL 767 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+A+++ +MDN+ + + ++ ++I PP +N F V Sbjct: 768 LSYQTLWLKTHYPAEFMASTLNSDMDNLNRTINLLNECKRIGLKIHPPDINNSQYYFCVN 827 Query: 832 DNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I Y + AIKG+G T+ I+++ + F L DFC R+++ K+N R++E L+F+G Sbjct: 828 KKKEIVYGIGAIKGIGKTSIDEIVKSRNCHGEFKGLFDFCVRIENLKINFRMVEKLIFSG 887 Query: 890 ALDCFGYSRMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE-- 946 A D F R +LL +L D I Q++ K + +K ++F T + + S Sbjct: 888 AFDSFKTHRSKLLSTLKDTINNATQYINK-KNSKQTDMFETYINTQVTEYNVLNMSCMTS 946 Query: 947 ---NSSVRFENEQRVLGFYFSGHPLDVY 971 N+ + E E+ +G Y + HP+D Y Sbjct: 947 TKWNNQILLEKEKETVGLYLTNHPVDQY 974 >gi|325923963|ref|ZP_08185552.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865] gi|325545546|gb|EGD16811.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865] Length = 1196 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1009 (40%), Positives = 601/1009 (59%), Gaps = 64/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G + I TP T + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGADVMI------------ATPDMTPWRMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V I WLQ G L L G S R F + +AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAIHPEWLQS-GHVNLFALAGRDS-LAGRLFGEGRADLAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G +R+ + + A LP+VA+N+ FL D+ AH+ + Sbjct: 172 RVFGDGLHLELTRTGREGEERFNQF-ALHAAGVRGLPVVASNDVRFLYASDFNAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D YLK+ EM ++F+D+P+A++NT +A+RC+ +++ L Sbjct: 231 ISSGRVLDDPKRPREYSDQQYLKSADEMAALFADVPDAIDNTHALAQRCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + + ++ +R++A GL RL + IA G QDY RL+FEL+ I +M Sbjct: 291 PAYPVPEDETL----DSWIRSQARDGLAARLEKSPIASGKTRQDYVDRLEFELDTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLY 522 D + KLIPN ++L+ + + ++ +A P V L++++++LE L Sbjct: 467 DSVAKLIPN--ILGITLKDAMGEGK--DSEMASPDLIQRYQVEDDVRDLMDLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRD----VRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PLS+ P++ + R VTQF+ +E GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNQVTQFDKDDVEAVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQAL 632 LT++ ++ + R + VD++ +P DD TY + G G +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINVRHARAGIDPVDITTLPLDDVPTYKGVFASGNTGAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I +N RK+G+++I+ P + +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L Sbjct: 703 EQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAHKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+ Sbjct: 823 GLTVKPPRVNESAYMFEAATPDTIQYGLGAIKGVGQGACEAIIEERQRGGPYTTLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV + KLNRR LE++V AGA+D G +R L+ L + K + + + R + ++F Sbjct: 883 RVGTAKLNRRTLEAMVNAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGP 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + ++ L + E+ LGFY SGHP D ++ +R++ Sbjct: 943 DPSAPALRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVREL 991 >gi|192360327|ref|YP_001981623.1| DNA polymerase III subunit alpha [Cellvibrio japonicus Ueda107] gi|190686492|gb|ACE84170.1| DNA polymerase III, alpha subunit [Cellvibrio japonicus Ueda107] Length = 1177 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1060 (38%), Positives = 615/1060 (58%), Gaps = 53/1060 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + +FVHL++H+ +SL + + + ++ ++A PA AITD N + ++F + A GI Sbjct: 3 AANFVHLRLHTEFSLSDSLVRIKPLIKRVAELNMPACAITDQTNFYGLIKFYKAAQGTGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G + M + PT+ + LL +GY+ +IEL+SR + Q + Sbjct: 63 KPIAGS--------DFLMASHETDGKPTL--LTLLAMNNQGYKNIIELISRAWRSGQQQG 112 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I W+ E +EG+I L+GG G + A A++ L + + F +R Y+ LQ Sbjct: 113 IAYIQREWISEY-SEGVIALSGGKFGDVGMALLGGRQAQAQELLQGWMRDFPNRFYLELQ 171 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R D V LA + P+VATN+ FL ++E H+ + + + R Sbjct: 172 RTGRENDENYLHAAVDLAAQMQCPVVATNDVRFLKTSEFEVHEARVCIGEGRTLDDPRRE 231 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D YL++ EMV +FSD+PEA+ N+VEIA+RC+ +Q+ LP + E Sbjct: 232 RRYSDQQYLRSAEEMVELFSDIPEAIANSVEIAKRCTITIQMGKYFLPEYPVPEG----L 287 Query: 306 EEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E R ++ GL+ RL + + Y +RL+FEL++I +M F GYFLIV Sbjct: 288 TEAEFFRKISLEGLDWRLEKILDKSLPDYAERRKVYEERLNFELDIIIQMGFPGYFLIVM 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQWAK ++IPVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R+SMPDFDID Sbjct: 348 DFIQWAKDHDIPVGPGRGSGAGSLVAYALKITDLDPLQYDLLFERFLNPERVSMPDFDID 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D RD+VI YV YG + V+QIITFG++ AKA +RDV R Y D+L K+IP Sbjct: 408 FCMDNRDKVIAYVAENYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPP 467 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P ++ QA+ ++ + +E D + E++ +LEGL R+ HA G+VI L+ Sbjct: 468 TPGMTLA-QALEEEPQLKEFLAQDGDAQEIWEMAVQLEGLTRNVGKHAGGVVIAPTKLTD 526 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P++ D VTQF+ +E+AGL+KFDFLGL+TLT++ + + ++ K + Sbjct: 527 FAPLFCDETGSGLVTQFDKGDVEEAGLVKFDFLGLRTLTIIDWARIMIDKQRRKRGESPL 586 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +T+ LL T +FQLES GM+ ++ +QPD IED+IALV+L+RPGP++ Sbjct: 587 DINAIPLDDAKTFGLLKRAETTAVFQLESRGMKDLIKRLQPDNIEDLIALVALFRPGPLE 646 Query: 657 NIVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + NRK+G+ ++ H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 647 SGMVDDFINRKHGRAEVAYPDAKFQHASLKPVLEPTYGVIVYQEQVMQIAQVLAGYTLGG 706 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA K G+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 707 ADMLRRAMGKKKPEEMAKQRSVFEEGAKKQGVDPDLAIKIFDLVEKFAGYGFNKSHSAAY 766 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQTAW+K HYP F+AA+M+ +MD +K+ F ++ R ++++PP VN+ F Sbjct: 767 AIVSYQTAWLKAHYPAHFMAATMSSDMDKTDKVVTFIEECRTMKLKLLPPDVNSGEFHFT 826 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D RI Y L AIKG+G I+ A D PF L DFC+RVD++K+N+R LE+++ Sbjct: 827 VDDAGRIIYGLGAIKGLGEGPVESIIAARNDGGPFKDLFDFCARVDARKVNKRALEAIIR 886 Query: 888 AGALDCFG-----------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKG 932 +GA D G + R + ++ K A+ N ++F A E+ Sbjct: 887 SGAADSLGPTYDTPEYNIDHDRAVMFSAMAEAVKTAEQATANSNAGMMDLFGAVMASEES 946 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 T + R E+ LG Y +GHP+D Y+ L + ++ +G Sbjct: 947 TNDVYADFRRVRTWTIKERLHAEKETLGLYLTGHPIDEYESELSHF-VSSRIANLKPEKG 1005 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 N +A +++S++ KT++G + +T + + F Sbjct: 1006 NQT-IAGLIISQRIVKTKRGDNMAILTLDDRTGRMDITLF 1044 >gi|251771258|gb|EES51839.1| DNA polymerase III, alpha subunit [Leptospirillum ferrodiazotrophum] Length = 1193 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1044 (40%), Positives = 622/1044 (59%), Gaps = 32/1044 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA + +++K A PA+A+TD NLF ALEF ++A G++PI Sbjct: 9 FVHLHLHTQYSLLDGANKIAPLMEKCARLGMPAVAMTDHGNLFGALEFYREAQKHGVKPI 68 Query: 71 IGCQLDIDMQ-----DNLKMTNQGKTPFPTVPS----IVLLVSTAEGYQRLIELVSRMYL 121 +GC+L + + + L M + G + + + LL GYQ L+E+VSR +L Sbjct: 69 LGCELYVTPRSRFDREELLMPSGGPHGGKKINNASFHLTLLAENLTGYQNLLEIVSRAHL 128 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180 + R L EGLI L+G G + + A F+ +FG Sbjct: 129 -EGFYYRPRADFELLYR-HREGLIALSGCLKGQVSYLLTRGERERACATADLFRNIFGPG 186 Query: 181 RLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 R + LQ + G + R +++ L+ ++P+VATN+ +L ED HD+L+ + Sbjct: 187 RYFFELQAN-GLEEQRVANRELLSLSREMKIPVVATNDCHYLDREDALPHDILLCLQTGK 245 Query: 239 VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + +R R + YLK+ E++ F ++PEA+ENT+ IA R L + +P ++ Sbjct: 246 TLDDPNRLRFGAEEFYLKSPDEVIEAFREIPEAVENTLAIAERIDLTLDLKKTYMPEYV- 304 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFS 354 + + + +++ GLEVR + K + A+ YR RL+ E+ VI M F+ Sbjct: 305 PDVGETGRTINELFCDRSREGLEVRFGE----KEFDAERKELYRARLEREIAVILEMGFA 360 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIV DFI+ A++ I VGPGRGS AGS+ A++L IT+IDP+ F LLFERFLNP+R+S Sbjct: 361 GYFLIVWDFIRKAREQGIAVGPGRGSAAGSLVAWSLRITNIDPIAFGLLFERFLNPERVS 420 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 +PD D+DFC +RR EVI YV KYG +RV+ I TFG++ AKA++RDVGR L M YS+VDR Sbjct: 421 LPDIDVDFCMNRRGEVIDYVMKKYGADRVSMIATFGTMGAKASIRDVGRVLGMTYSEVDR 480 Query: 475 LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 + K+IP A ++L+ A+ + FRE R DP++DRL+ +S KLEG+ RHAS HAAGIV Sbjct: 481 VAKMIPT--ALEMTLEKALEQNKEFRELREKDPAIDRLVSLSMKLEGITRHASIHAAGIV 538 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I PLS VP+ R + VTQF +EK GL+KFDFLGL TLTL++ ++ + Sbjct: 539 ISQDPLSGHVPLMRGAGGET-VTQFTKDDVEKVGLVKFDFLGLTTLTLIEDAVRRIRVHT 597 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + D+ IP DD TY L TLGIFQLES GM L + P+ ED+IAL++LYRPG Sbjct: 598 PEFDIDRIPLDDPGTYAFLQGGKTLGIFQLESRGMTDLLVKLAPEVFEDLIALLALYRPG 657 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PI++ +V + RK +IV HP ++P+L+ET GVI+YQEQVMQIA +L+G+SL +AD Sbjct: 658 PINSGMVDDFIRRKKNPREIVYEHPDLEPILRETYGVIVYQEQVMQIANVLAGFSLGDAD 717 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM+K K FI+GA + +T A +IFEL+A FA YGFNKSH+AAYA+ Sbjct: 718 LLRRAMGKKKPEEMEKMKGLFITGAVERKTDRTKADHIFELMAHFAGYGFNKSHSAAYAL 777 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTA++K HYPVEF AA +T +D+ EKI F AR+ +I+++ P +N +DF V Sbjct: 778 ISYQTAYLKAHYPVEFWAALLTNALDDTEKIGTFLAGARELDIRVLSPDINESLLDFTVL 837 Query: 832 DNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 R I + L A+K VG I+E +A PF S DF R+D K+NRRV+E+L AG Sbjct: 838 PGRTIRFGLGAVKNVGRQAVEAILEIRAAGGPFLSFPDFMKRIDGHKVNRRVVEALAKAG 897 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D G +R + ++D + ++ ++K + +K +F + + + Sbjct: 898 AFDSLGTTRAAAMANIDPLLEWVAGIKKPKKSKMGKLFREFEQDSEPEAPWTAVPEWDEK 957 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + E+ LGFY S HP+ Y I ++ + G+ + + +V + ++ KT Sbjct: 958 TLLKAEREGLGFYLSRHPMTPYMKIAEELECPTLGQLEGQAEGSTVSVFGIVSAIRELKT 1017 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 +KG ++ VT + + E FP Sbjct: 1018 KKGDKMAQVTLMDFEQSLEMVLFP 1041 >gi|303248384|ref|ZP_07334644.1| DNA polymerase III, alpha subunit [Desulfovibrio fructosovorans JJ] gi|302490182|gb|EFL50100.1| DNA polymerase III, alpha subunit [Desulfovibrio fructosovorans JJ] Length = 1160 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1027 (40%), Positives = 607/1027 (59%), Gaps = 31/1027 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+GA+ + +++ PA AITD NL AL F A A ++PI Sbjct: 4 FVHLHCHTEYSLLDGAIRIGDLVKTAKGFGCPAAAITDHGNLHGALMFYDYAKKADLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + +D K ++P +VLL GY L++LVS+ +L + R Sbjct: 64 IGCEVYVAKEDRRK--KDARSPRDAGYHLVLLAKDMTGYHNLLKLVSKGHL-EGFHYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + G EGLI L+ G I++ S A + LF DR Y+ +Q + Sbjct: 121 VDKELLGQYG-EGLIALSACLKGEINQKLLRESRDAAVATAREYAALFPDRFYLEIQDNG 179 Query: 191 GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ + +++L+ +LPLVATN+ +L +D EAHD+L+ + + V R R T Sbjct: 180 IPEQTTVNNFLIELSDDLKLPLVATNDCHYLHADDAEAHDILLCIQTAACVDDVKRMRFT 239 Query: 250 P-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKECDDIQK 305 D Y ++ EM F D+P+AL NT EIA R L H P+ K DD+ Sbjct: 240 SNDLYYRSPEEMAEAFKDVPQALANTCEIADRIDVKLDFDGYHFPVYKAPPGKSLDDVMS 299 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + E GL+ RLA+ A + Y +RL+ EL VI +M F GYFLIV DFI Sbjct: 300 DMARE-------GLKKRLAKMPEAD---PKQYWERLELELGVITKMGFPGYFLIVQDFIN 349 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK ++IPVGPGRGS AGS+ AY+L IT++DP+ + L FERFLN +R+SMPD D+DFC+ Sbjct: 350 WAKDHDIPVGPGRGSAAGSLVAYSLRITNLDPMPYDLFFERFLNIERVSMPDIDVDFCER 409 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVIRYV YG + VAQI TFG+++AK +RDVGRAL M + + DR+ KLIP D Sbjct: 410 RRHEVIRYVTEHYGADAVAQITTFGTMKAKGVVRDVGRALGMTFGETDRIAKLIPEDLKM 469 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + + DP + L++IS++LEGL RHASTHAAG+V+ D+ +++ VP+ Sbjct: 470 TID-KALELEPELKTLVRTDPRIAHLIDISRRLEGLARHASTHAAGVVVSDKAMTEYVPL 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604 Y+ +++ VTQ++MK +EK+GL+KFDFLGLKT+T++ +L + + G + D +P Sbjct: 529 YKG-KNNETVTQWDMKRVEKSGLVKFDFLGLKTITVIDDALKIIREMGEEPPDFETLPMT 587 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662 D TY L T GIFQ+ES GMR+ L ++P+C ED+IA+++LYRPGP+ + +V + Sbjct: 588 DPATYELFARGDTDGIFQVESQGMRKYLRMLKPNCFEDLIAMLALYRPGPLGSGMVELFI 647 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G + + HPL++ L+ T GVI+YQEQVM+IAQ+L+ YSL D+LRRAMGKK Sbjct: 648 RRKHGLDPVEYPHPLLEETLRSTYGVIVYQEQVMKIAQVLANYSLGGGDLLRRAMGKKNA 707 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEM +Q+ F+ G ++N I A IF+L+ KFA+YGFNKSH+AAYA ISYQTA++K H Sbjct: 708 EEMSRQRGIFVEGCAQNKIDAKKANEIFDLMEKFAEYGFNKSHSAAYAQISYQTAYLKAH 767 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPV F+AA MT +M+N +K+ ++ R +I++ PP VN F V DN+I Y LAA+ Sbjct: 768 YPVAFMAALMTSDMENQDKLLQYIAACRAGDIELCPPDVNAGLPHFSVKDNKILYGLAAV 827 Query: 843 KGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K +G I E D PF SL D SRV+ +K+ +RV+E L+ GA D FG +R L Sbjct: 828 KNIGRDAVLEIAAEREKDGPFSSLLDLTSRVNMRKVTKRVIEYLIKCGACDGFGCTRAGL 887 Query: 902 LQSLDNI----QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SSVRFENE 955 LD Q+ A + R + E + K T ++ + + E Sbjct: 888 FAGLDQAAAVGQRRAAEKSEGRLSLMELVPDKPKPTVGLGLSCPEAELPEWLHEEMMAYE 947 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGFY + HPL Y+ LR M + + G +++ + V+ ++ T+KG ++ Sbjct: 948 KEALGFYLTSHPLLAYERDLRSMRVTTLSQCAGLEPGVEVKVPCICVTTKEIITKKGQKM 1007 Query: 1016 GWVTFSE 1022 + + Sbjct: 1008 AFCKLED 1014 >gi|157829043|ref|YP_001495285.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933767|ref|YP_001650556.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. Iowa] gi|157801524|gb|ABV76777.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908854|gb|ABY73150.1| DNA polymerase III alpha subunit [Rickettsia rickettsii str. Iowa] Length = 1181 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1084 (38%), Positives = 633/1084 (58%), Gaps = 85/1084 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I K I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + + + A +++ GDR Y + R Sbjct: 111 DHINFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +++ E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM+ +FSDLP A++NTV + RC F + P+LP F K+ E Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDIS-----E 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGYFLIV 360 + ++ A GL RLA ++ ++ Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIKKDATEGLLARLAAKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVSL QA+ + A + + +++ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDSNSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAA+Y Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT------- 823 VISYQTA++K +YP EFL A + LE++N +KI F Q+A+ I+I+ P++N Sbjct: 765 VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824 Query: 824 ---------------PCVDFKVGD--------------NRIYYSLAAIKGVGTTTARHIM 854 P +D + + I ++L AIKGV + + Sbjct: 825 QFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRYNIAGAIIFALGAIKGVTPNFGKLVT 884 Query: 855 -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 E A F S+ DF R+ K +N ++LE+L+ +G D +R+QLL S+ + Y+ Sbjct: 885 DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944 Query: 914 -WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + E+ +N+ I + + S I + + +++ F E +G + S HPL Y+ Sbjct: 945 AYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAFY-EFEAMGLFISNHPLTEYQ 1000 Query: 973 PILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYE 1028 I ++ I + + N + LA ++ Q+K +R +R +VT S+P +E Sbjct: 1001 EIFSRLNILNTADLHNNLPDGTNRVNLAGVI---QKKDSRMSARGRFVTLVLSDPENIFE 1057 Query: 1029 ANFF 1032 + F Sbjct: 1058 LSIF 1061 >gi|309973764|gb|ADO96965.1| DNA polymerase III alpha subunit [Haemophilus influenzae R2846] Length = 1159 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1057 (39%), Positives = 618/1057 (58%), Gaps = 56/1057 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGTDVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E +G+I+L+GG+ G + + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R + R Q ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 168 LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+++++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT E+DN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR E+ Sbjct: 822 HFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFEN 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA D G R L ++L++ + + K+ ++F +T Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFG--------VLTETHEE 933 Query: 945 VENSSVR---------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VEN+ + E+ LG Y S HP+ Y L ++ RG Sbjct: 934 VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQIS 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + T+KG+R+G T + + + F Sbjct: 994 TVAGLLVASRIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|300312866|ref|YP_003776958.1| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1] gi|300075651|gb|ADJ65050.1| DNA polymerase III (alpha chain) protein [Herbaspirillum seropedicae SmR1] Length = 1152 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/992 (41%), Positives = 595/992 (59%), Gaps = 41/992 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL++HS YS+++G + +++I+ A D Q A+A+TD NLF + F ++A G+ Sbjct: 3 TPQFVHLRMHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLANLFCMVRFYKEARGKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQG--KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 +PI GC +L +TN + PF +++L+ GY +L E++S+ +L +Q Sbjct: 63 KPIAGC--------DLWITNDADREKPF----RLLVLIKNRHGYLQLCEVLSQAWLNNQY 110 Query: 126 KQSVRICLSWLQEI----GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 K + + WL + G GLI L+G + G I +A + AE + ++F Sbjct: 111 KGRAEVRMEWLDALRHQEGGNGLIALSGAAMGDIGQAIDNGNLAQAEACARRWAEIFPGA 170 Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQR + + Q V L LP VAT+ F S E++ AH+ +A ++ Sbjct: 171 FYLELQRAGQANMEVQVRQSVALGAKLGLPCVATHPIQFQSPEEFIAHEARTCIAEGEIM 230 Query: 241 SQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + R R Y K+++EMV +F+DLP A+ NTVEIA+RC+ +LQ+ P LP F + Sbjct: 231 ANARRVRRFNEQQYFKSQAEMVELFADLPGAVANTVEIAKRCNLVLQLGKPQLPDFPTPD 290 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 I ++ L + AGLEVRL + + Y RL+FE N I +MKF GY Sbjct: 291 GMTI----DDFLVAQTKAGLEVRLKELFPNEAEREKQRPRYEARLEFENNTIIKMKFPGY 346 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPLR++LLFERFLNP+R+SMP Sbjct: 347 FLIVADFIQWAKNNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSMP 406 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFCQ+ RD VI+YV+++YG E V+QI TFG++ AK A+RDVGR L + Y+ D + Sbjct: 407 DFDIDFCQEGRDRVIQYVKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGIS 466 Query: 477 KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP P V+L AI ++ +E + V +L+ ++Q++EG+ R+ HA G++I Sbjct: 467 KLIPFKPGKLVTLADAIEEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIA 526 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF---LAQR 592 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L +++ + L Sbjct: 527 PGKLTDFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDPA 586 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 DL+ +P DD +Y LLT T+ +FQLES GM+ L+ +PD EDIIALV+LYRP Sbjct: 587 MADFDLAKLPLDDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRP 646 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+D I + RK+G E P + +L ET G+++YQEQVMQ+AQ++ GYSL AD+ Sbjct: 647 GPMDLIPDFCKRKHG-EAFDYPDPRTEGILSETYGIMVYQEQVMQMAQVIGGYSLGGADL 705 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM K +E F GA+KNG+ + A IF+L+ KFA YGFNKSHAAAYA++ Sbjct: 706 LRRAMGKKKAEEMAKHRELFREGAAKNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYALL 765 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDF-KV 830 SY TA++K H+P F+AA+++L M++ +K+K +DA + I+PP +N F V Sbjct: 766 SYYTAYLKAHHPAAFMAANLSLAMEDTDKVKILIEDAIDICKLAILPPDINKSDYRFMPV 825 Query: 831 GD-----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 G+ +I Y L A+KG G I+EA PF L DF RVD K++NRR ++SL Sbjct: 826 GEPGKKATQIRYGLGAVKGAGQNAIEAILEARKSGPFKDLFDFAKRVDKKQINRRTIDSL 885 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGA DCF R L S++ + A+ EK + ++F + + + Sbjct: 886 IRAGAFDCFKVDRAVLQASVNLAWESAEQAEK--SANQVSLFGGDDSDLEAPLEYVQVPP 943 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + R E+ LGFY SGH Y+ +R+ Sbjct: 944 WSDKQRLTEEKGALGFYLSGHLFSAYEKEVRR 975 >gi|170733672|ref|YP_001765619.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia MC0-3] gi|169816914|gb|ACA91497.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia MC0-3] Length = 1175 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1022 (40%), Positives = 621/1022 (60%), Gaps = 42/1022 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + +++I+ AAD Q A+A+TD N F + F Q+A GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC + I D+ ++ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGCDVWIANPDDRDKPSR----------LLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL +GL+ L+G G I A + + A + + ++F Y+ LQR Sbjct: 114 AELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y + + EM ++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDSSKADWSL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +K F L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QL+ S+ + A E N +F + G S +++ + ++ R Sbjct: 889 DSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLF--DMGAESPHALVDEPAWDDKR-R 943 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + V ++ G + +A ++ S + + T+ Sbjct: 944 LQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKVGDLKEGRDKLVAGIIASLRTQMTQ 999 Query: 1011 KG 1012 +G Sbjct: 1000 RG 1001 >gi|217970003|ref|YP_002355237.1| DNA polymerase III subunit alpha [Thauera sp. MZ1T] gi|217507330|gb|ACK54341.1| DNA polymerase III, alpha subunit [Thauera sp. MZ1T] Length = 1174 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1046 (39%), Positives = 610/1046 (58%), Gaps = 42/1046 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL++HS YS+ +G + L+ + AAD PA+ ++D NLF ++F + A GI Sbjct: 17 APRFVHLRLHSEYSITDGIVQLDQAIAAAAADGMPALGVSDLANLFGMVKFYKGARGKGI 76 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+G + + N+ + P ++L+ GY +L EL++R YL ++ + Sbjct: 77 KPIVGV--------DAWIRNEAERDKPQ--RVLLICKNRAGYGQLCELLTRAYLENKHRG 126 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + W + L+ L+G SG I A + +AE+ + +LF D Y+ +Q Sbjct: 127 RAEMRREWFENGAASALLCLSGAMSGDIGAAIAAGNLALAEQLAADWARLFPDAFYIEIQ 186 Query: 188 R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R H G + Y V+LA LP+VAT+ FL ED++AH+ + +A V++ K R Sbjct: 187 RAGHPGTESYIR-HAVELAGRLGLPVVATHPVQFLKREDFKAHEARVCIAQGYVLADKRR 245 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR T + YLK+++EM +F+DLPEALEN VEIARRCS +Q+ LP F E + Sbjct: 246 PRDFTEEQYLKSQAEMCELFADLPEALENAVEIARRCSLTVQLGKNFLPLFPTPEGMTL- 304 Query: 305 KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ L +A GLE RLAQ + Y QRL FE + I +M F GYFLIVA Sbjct: 305 ---DDFLVAEAKKGLEERLAQLYPHPEERERQRPRYEQRLKFETDTIIQMGFPGYFLIVA 361 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQW K N +PVGPGRGSGAGS+ AY+L ITDIDPL ++LLFERFLNP+R+SMPDFDID Sbjct: 362 DFIQWGKNNGVPVGPGRGSGAGSLVAYSLKITDIDPLEYALLFERFLNPERVSMPDFDID 421 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQD R VI YV+ +YG + V+QI TFG++ +KA +RDVGR L +PY DRL KLIP Sbjct: 422 FCQDNRYRVIEYVRERYGKDAVSQIATFGTMASKAVVRDVGRVLDLPYGLCDRLSKLIPI 481 Query: 482 DPAHPVSLQAIADDSRFREARLAD----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 + A PVSL + +AD SV L ++Q LEGL R+ HA G++I Sbjct: 482 EGAKPVSLNKAYEMEPQIGEMMADGNDGESVRDLWSLAQPLEGLSRNVGMHAGGVLIAPG 541 Query: 538 PLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595 L+ P+Y D PV+QF+ +E GL+KFDFLGL+ LT+++ +L+++A+ G + Sbjct: 542 KLTDFCPLYIADGDDATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALEYVARLEGSR 601 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 DL + F+D Y +L T IFQ+ES GM++ L+ + PD EDIIA+++LYRPGP+ Sbjct: 602 PDLMSLGFEDPAAYQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPGPL 661 Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 + +V + RK G+++I HP + L+ T GVI+YQEQVMQI+Q++ GY+L AD+L Sbjct: 662 GSGMVDDFILRKKGQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGADML 721 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK +EM K + GA + G +A +F+L+ KFA+YGFNKSH AAYAV++ Sbjct: 722 RRAMGKKKADEMAKHRATIAEGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVT 781 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+ F+AA+M+ ++DN + +K F +D I+++PP VN F D Sbjct: 782 YHTAWLKAHHCAAFMAATMSSDLDNTDTVKIFYEDTLANGIKVLPPDVNASDYRFVPVDR 841 Query: 834 RIY-YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +I Y L A+KGVG R I+ A F L DFC RVD + +NRRV+E+L+ AGA+ Sbjct: 842 KIIRYGLGAVKGVGEPAVRAILAAHEKGGDFRDLFDFCERVDRRMVNRRVIEALIRAGAM 901 Query: 892 DCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 D G R QL+ ++ + A+ + +F K Sbjct: 902 DTLPGHKGLDRAQLMATVALAMEAAE--QAAANAMQGGLFDLMPEAAGAAPEFAKVRAWT 959 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQ 1006 R + E+ +GF+ SGHP + +KP +R+ ++A + +I + A VV +Q+ Sbjct: 960 ERERLKEEKLAIGFFLSGHPFNAFKPEVRRF----VRRTLAQLEPSRDITMLAGVVMEQR 1015 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 K ++ +V + + E + Sbjct: 1016 TKVGNRGKMAFVLLDDGTEPREVTVY 1041 >gi|261492352|ref|ZP_05988914.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312035|gb|EEY13176.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 1142 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1036 (39%), Positives = 606/1036 (58%), Gaps = 48/1036 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 ++ G + +++ A+ A+ +TD N ++F +A AGI+PIIG + + Sbjct: 1 MINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGAGIKPIIGADVYV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK-QSVRICLSWLQEIG 140 T G + + LL +GY + +++S+ Y QG + + WL E+ Sbjct: 57 ---RTEAGSEDYF---ELTLLAKNNKGYHNITQILSKAY--QQGYIEFPMVEREWLAEL- 107 Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQ 199 EG+I+L+GG G + +A + Q AE+++ +++ + + Y+++ R D R Q Sbjct: 108 NEGIIILSGGRMGDVGKALLKENRQEAEEKVAFYQQYYPNHFYLSVCRTGRADEERYIKQ 167 Query: 200 VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRS 258 V+ + + +PLVA N+ +FL E+D++AH++ +A+ S + RP+ +P Y + Sbjct: 168 AVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEE 227 Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318 EM +F+DLP AL NTVEIA+RCS +++ LP F E E+ L K+ G Sbjct: 228 EMCKLFADLPSALANTVEIAKRCSVTVRLGEYFLPNFPTGELST-----EDFLVKKSKEG 282 Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375 LE RL + Y +RL EL+VI +M F GYFLIV +FIQW+K N+IPVG Sbjct: 283 LEERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVG 342 Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435 PGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V Sbjct: 343 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVA 402 Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495 YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP DP + +A A + Sbjct: 403 ETYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAE 461 Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PV Sbjct: 462 PKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPV 521 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH 610 T F+ +E AGL+KFDFLGL+TLT+++ +L+ + +R + + + I DD +++ Sbjct: 522 THFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETISLDDKKSFA 581 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGK 668 LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+++ +V N +RK+GK Sbjct: 582 LLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGK 641 Query: 669 EKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 E++ H + P+L+ T GVI+YQEQVMQIAQ L+GY+L AD+LRRAMGKK E Sbjct: 642 EEVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPE 701 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM Q+E F GA GI +A IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY Sbjct: 702 EMAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 761 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842 P EF+AA MT EMDN +KI F + + ++PP VN+ F V + I Y L AI Sbjct: 762 PAEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAI 821 Query: 843 KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 KGVG I+ A + F L D +RVD KK+NRR ESL+ +GA D G R L Sbjct: 822 KGVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAAL 881 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-----SVRFENEQ 956 +++L++ K + K ++F G ++ + + N+ V + E+ Sbjct: 882 MKNLEDALKASDQHAKMEELGQSDMF----GVLTETPEEVQNAYANTPKWSEQVILDGER 937 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LG Y SGHP+ + L E T RG ++ +V++ + T++GSRIG Sbjct: 938 ATLGLYLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIG 997 Query: 1017 WVTFSEPAKEYEANFF 1032 T + + + + F Sbjct: 998 IATIEDRSGKLDITLF 1013 >gi|212710382|ref|ZP_03318510.1| hypothetical protein PROVALCAL_01442 [Providencia alcalifaciens DSM 30120] gi|212686964|gb|EEB46492.1| hypothetical protein PROVALCAL_01442 [Providencia alcalifaciens DSM 30120] Length = 1144 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1040 (40%), Positives = 613/1040 (58%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K+AA PA AITD NL ++F A AGI+PIIG ++ + Sbjct: 1 MIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIIGADFYMESE- 59 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 ++ ++ V + +L EGYQ L L+S Y G I WL + Sbjct: 60 --QLGDE-------VAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + + + + ++ L ++ F D Y+ L R R + Sbjct: 110 EGLILLSGGRKGDVGQFLLRGNQALVDESLEFYQTYFPDAYYLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ ++ RP+ +P YL+ E Sbjct: 170 VELATQRGLPVVATNDVCFIESSDFDAHEIRVAIHDGYTLADPKRPKNYSPQQYLRTEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALEN+VEIA+RC+ +++ LP+F + E E+ L +A GL Sbjct: 230 MCELFSDIPEALENSVEIAKRCNVTIRLGEYFLPKFPTGDM-----ETEDFLVMRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + +Y +RL+ ELNVI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLKFLFPDEKVRAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEVEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D++ IP DD +++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLDPIDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVNWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F G+ KNG+ +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F + D C+RVD KK+NRRV+E L+ AGA D G R L+ Sbjct: 824 GVGEGPIEAIIEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDHLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL++ K A ++H A +G + VE+S V + Sbjct: 884 SSLEDALKAA--------DQHAKAEAIGQGDMFGVLAEAPEQVESSYASVPKWPEQVVLD 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP+ Y I R ++ T RG + +V+S + T++G Sbjct: 936 GERETLGLYLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + + F Sbjct: 996 NRIGICTLDDRSGRLDIMLF 1015 >gi|241763389|ref|ZP_04761444.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN] gi|241367431|gb|EER61742.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN] Length = 1198 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/997 (40%), Positives = 582/997 (58%), Gaps = 48/997 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++H+ +S+++G ++++ A D QPA+AITD NNLF A++F ++A G++ Sbjct: 16 PMFVHLRLHTEFSVVDGTNRIDDLAKAAAKDGQPALAITDLNNLFGAIKFYKEARGKGVK 75 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G ++ ++ + G P +++LV +GY L EL++R + + K Sbjct: 76 PILGAEIFLEGE-------AGAAP----SRMLVLVQGRQGYLNLSELLARAWTRNVVKAQ 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 WLQE+G EGLI + G +GP+ +A A L +F R Y+ +QR Sbjct: 125 AICTWDWLQELG-EGLIAIAGAQAGPVGQALMKGDDAGAAALALRLAGIFPHRFYIEVQR 183 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D VQLA LP+VAT+ F + +DYEAH+ + +A ++ + R R Sbjct: 184 AGRADDEAHVVAAVQLAARLHLPVVATHPVQFATADDYEAHEARVCIAEGEILGNQRRVR 243 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y K+ ++M ++F+DLP AL N+VEIARRC+ L + P LP F + Sbjct: 244 KFTREQYFKSSAQMQALFADLPTALANSVEIARRCNITLVLGKPQLPNFPIPPVNGQVLS 303 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ R+ + GLE RL + Y +RL+FEL I +M F GYFLIV DF Sbjct: 304 VDDYFRHVSFEGLEERLRLLFPDEARRNVERPRYVERLEFELGTILKMGFPGYFLIVGDF 363 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK + PVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNP+R+SMPDFDIDFC Sbjct: 364 IQWAKTHGCPVGPGRGSGAGSLVAYALKITDLDPLEYNLLFERFLNPERVSMPDFDIDFC 423 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 424 QSNRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKP 483 Query: 484 AHPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 +LQ A+ + E + V ++E++QKLEG+ R+ HA Sbjct: 484 GMSYTLQYPPEVKKDGDKNNYALELEPLLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHA 543 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 G++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ Sbjct: 544 GGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFI 603 Query: 590 AQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 +R + IP DD TY L + T +FQ ES GM+ L +P +ED+IAL Sbjct: 604 MKRHKGQENFAYENIPLDDGPTYRLFSEGKTEAVFQFESRGMQGMLREARPSRLEDLIAL 663 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 +LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYS Sbjct: 664 NALYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLSETYGIMVYQEQVMQTAQVLGGYS 723 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM + + F GA++ GIS+ A +F+L+ KFA YGFNKSHA Sbjct: 724 LGGADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHA 783 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPC 825 AAY++++Y T W+K HY EF A+MT+EMD+ +K+K +DA++ F + PP VN Sbjct: 784 AAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAKKNFGLTFEPPDVNRGM 843 Query: 826 VDFK-VGDNRIYYSLAAIKGVGTTTARHIMEA----------SADKPFDSLEDFCSRVDS 874 F+ V D I Y L A+KG G I+ A S PF SL DFC RVD Sbjct: 844 YRFEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGRGEGPQGSTKGPFKSLFDFCVRVDR 903 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENIFAHEKG 932 +LN+R +E+L+ AGA D +R ++ S+D + A N+ + + G Sbjct: 904 ARLNKRTVEALIKAGAFDALNLNRAAMVASIDRAFDFAAATLANVNQGGLFDMMGEDAHG 963 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + + + L R E+ +GFY SGH D Sbjct: 964 SSTQEPDLVDAVPWGIKERLTQEKTAVGFYLSGHLFD 1000 >gi|170729407|ref|YP_001774840.1| DNA polymerase III subunit alpha [Xylella fastidiosa M12] gi|167964200|gb|ACA11210.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 1193 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1054 (39%), Positives = 632/1054 (59%), Gaps = 74/1054 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53 + SFVHL +H+ +SL + + + N+L + PA+A+TD NNLF Sbjct: 3 TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 62 Query: 54 SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 + ++F + A GI+PI G L I ++ TP+ + LL GY L Sbjct: 63 ALIKFYKAAETVGIKPISGADLLIAEPEH--------TPW----GMTLLCRDHAGYLNLS 110 Query: 114 ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 +L+SR +L + V + W+++ + L L G S + + F + +AE++L Sbjct: 111 QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LVGQLFAKGRADLAEQQLA 168 Query: 173 TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++++FGD L++ L R R + +Q+A +P++A+N+ FL D+ AH+ Sbjct: 169 DWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEAR 228 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 229 VCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTY 288 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 LP + + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I + Sbjct: 289 FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 344 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP Sbjct: 345 MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNP 404 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 405 ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 464 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522 VD + KLIP+ ++L+ + + A L A+ V LL ++++LE L Sbjct: 465 LVDSVAKLIPSTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PL++ P++ + R PVTQF+ +E+ GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632 LT++ ++ + +R + VD++ +P DD TY + + T +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L Sbjct: 703 EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 N++++ P++N F+ + I Y L AIKGVG + I++ P+ SL DFC+ Sbjct: 823 NLKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV S KLNRR LE+++ AGALD G +R ++ L + K + + + R + ++F + Sbjct: 883 RVTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNA 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988 + GT + ++ L + + E+ LG YFSGHP D Y+ ++++ G ++ Sbjct: 943 DPGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1002 Query: 989 TI-----RGN----------NIRLAAMVVSKQQK 1007 I RGN N LA +VVS ++K Sbjct: 1003 RILSSQQRGNGEKRTWQPEVNTILAGLVVSMRRK 1036 >gi|238650797|ref|YP_002916652.1| DNA polymerase III subunit alpha [Rickettsia peacockii str. Rustic] gi|238624895|gb|ACR47601.1| DNA polymerase III subunit alpha [Rickettsia peacockii str. Rustic] Length = 1181 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1084 (38%), Positives = 633/1084 (58%), Gaps = 85/1084 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I K I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + + + A +++ GDR Y + R Sbjct: 111 DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +++ E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM+ +FSDLP A++NTV + RC F + P+LP F K+ E Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDIS-----E 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + ++ A GL RLA ++ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVSL QA+ + A + + +++ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLKQALHEVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDSNSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAA+Y Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-------- 822 VISYQTA++K +YP EFL A + LE++N +KI F Q+A+ I+I+ P++N Sbjct: 765 VISYQTAYLKANYPAEFLVACLNLELNNHDKINFFLQEAKDNGIKIIAPNINISEGYFSV 824 Query: 823 --------------TPCVDFKVGD--------------NRIYYSLAAIKGVGTTTARHIM 854 P +D + + I ++L AIKGV + + Sbjct: 825 KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRYDIAGAIIFALGAIKGVTPNFGKLVT 884 Query: 855 -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 E A F S+ DF R+ K +N ++LE+L+ +G D +R+QLL S+ + Y+ Sbjct: 885 DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944 Query: 914 -WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + E+ +N+ I + + S I + + +++ F E +G + S HPL Y+ Sbjct: 945 AYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAFY-EFEAMGLFISNHPLTEYQ 1000 Query: 973 PILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYE 1028 I ++ I + + N + LA ++ Q+K +R +R +VT S+P +E Sbjct: 1001 EIFSRLNILNTADLHNNLPDGTNRVNLAGVI---QKKDSRMSARGRFVTLVLSDPENIFE 1057 Query: 1029 ANFF 1032 + F Sbjct: 1058 LSIF 1061 >gi|187478729|ref|YP_786753.1| DNA polymerase III subunit alpha [Bordetella avium 197N] gi|115423315|emb|CAJ49849.1| DNA polymerase III alpha subunit [Bordetella avium 197N] Length = 1163 Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1007 (40%), Positives = 604/1007 (59%), Gaps = 54/1007 (5%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + P FVHL+VHS +S+++G + + ++ ++A QPA+A+TD +NLF ++F + Sbjct: 1 MSEAVTTPPPFVHLRVHSEFSVVDGIVRIPGLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AGI+PI G + + ++ PF ++LV +GY L EL+S+ + Sbjct: 61 SARGAGIKPIAGADVWLSNDEDRD------KPF----RALILVRNNQGYLNLCELLSQAF 110 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L++Q K + WLQ G EGLI+L+GG +G I A ++ A + +F Sbjct: 111 LVNQYKGRAEVRREWLQ--GQEGLILLSGGRAGDIGHALDAGNTAGALALARQWAAMFPG 168 Query: 181 RLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Y+ LQR G + Y ++ ++LA LP+VAT+ FL +++++AH+ + +A Sbjct: 169 AFYIELQRAGMDGDETYTQA-AMRLAAEAGLPVVATHPVQFLDQDEFQAHEARVCIAEGE 227 Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 +++ R R +P YL++ EM F+D+P AL NTVEIA+RC+ L + P LP F Sbjct: 228 ILADPRRVRRFSPQQYLQSSEEMHQRFADVPSALANTVEIAKRCNLSLVLGKPRLPDFPT 287 Query: 298 KE---CDD--IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIA 349 E DD +Q EE GLE RLA + Y QRL +E + I Sbjct: 288 PEGVSLDDYLVQLSEE---------GLEKRLAFLYPDEAERARQRDSYYQRLRWECSTII 338 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLN Sbjct: 339 QMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLN 398 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFCQD R+ VI YV+ KYG V+QI TFG+L AKA +RD GR L MPY Sbjct: 399 PERVSMPDFDIDFCQDNRERVIEYVKLKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPY 458 Query: 470 SQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 D L KLIP +PA P SL+ + ++ FR+ + V L++++Q LEGL R+ H Sbjct: 459 MFCDGLSKLIPFNPADPWSLERTLKEEPAFRDRYEQEEEVRALVDLAQPLEGLTRNIGMH 518 Query: 529 AAGIVIGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 A G++I L+ P+Y + + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ Sbjct: 519 AGGVLIAPGKLTDFCPLYCQPGQENYAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVR 578 Query: 588 FLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 ++ Q D+ + DD Y +L T +FQLES GM++ L+ ++P+ EDII Sbjct: 579 YVRQFNPDQRDFDIMALSLDDPAAYKVLCDANTTAVFQLESRGMKELLKKLRPNTFEDII 638 Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 A+++LYRPGP+++ +V + NRK+G+ + HP ++ LK T GVI+YQEQVM I+Q++ Sbjct: 639 AMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLKSTYGVIVYQEQVMLISQII 698 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 GYSL AD+LRRAMGKK EEM K +E F GA G +AV +F+L+ KFA YGFN Sbjct: 699 GGYSLGGADLLRRAMGKKKPEEMAKHRELFQKGAVDKGHDPDLAVKLFDLMEKFAGYGFN 758 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSH+AAYA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ FC+DA+ ++++PP VN Sbjct: 759 KSHSAAYALIAYQTAWLKAYHPAEFLAATLSSDMDDTDKVQIFCRDAQDNGVEVLPPDVN 818 Query: 823 TPCVDFKVGDNR----------IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871 F ++ + Y L A+KG G I+ A AD PF +L DFC R Sbjct: 819 ASGYRFAPVEDEHTARGKPPRTMRYGLGAVKGTGQGAVEEILRAREADGPFVNLFDFCRR 878 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V +NRR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + Sbjct: 879 VGKHAVNRRTIEALIRAGAFDTIESNRAAMLASVGTAMEAAE--QAARSANQASLFGDDS 936 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 L K + N + E+ LG+YFSGH D ++ +R++ Sbjct: 937 SEVVAG-ELTKVAPWNLHTQLTEEKAALGYYFSGHLFDAWRDEVRRI 982 >gi|254524078|ref|ZP_05136133.1| DNA polymerase III, alpha subunit subfamily, putative [Stenotrophomonas sp. SKA14] gi|219721669|gb|EED40194.1| DNA polymerase III, alpha subunit subfamily, putative [Stenotrophomonas sp. SKA14] Length = 1196 Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1011 (40%), Positives = 607/1011 (60%), Gaps = 65/1011 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 FVHL VH+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G ++ + +G+ P+ + LL EGY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGA--------DVLIAEEGQDPW----RMTLLCRDREGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +R ++ + V + WL+ G L L G S R ++AE++L ++ Sbjct: 114 TRAWMEGHRPEGGVAVHPDWLK-AGNANLFALAGRQS-LAGRLALDGKHELAEQQLADWQ 171 Query: 176 KLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FGD L++ L R G + + + ++ A LP+VA+N+ FLS ++ AH+ + Sbjct: 172 RVFGDGLHLELTRTGREGEETFNQFALMA-AGQRGLPVVASNDVRFLSPSNFSAHEARVC 230 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ V+ RPR D YLK+ EM ++F+D+P+A++NT+ +A RC+ +++ L Sbjct: 231 ISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + + + + + R+ GLE RL + +A G ++Y +RL+FELN I +M Sbjct: 291 PNYPVPDDETLDTWIQKMSRD----GLEERLEKNPLAPGKTREEYFERLEFELNTIIKMG 346 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+R Sbjct: 347 FPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPER 406 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L PY V Sbjct: 407 VSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLV 466 Query: 473 DRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPS----------VDRLLEISQKLEGL 521 D + KLIPN + L+ A+ + +A P V L++++ +LE L Sbjct: 467 DGVSKLIPN--ILGIHLKDALGKGKEGPGSEMASPELIQRYETEDDVRDLIDLALQLEDL 524 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLK 577 R+A HA G+VIG PLS+ P+Y + + PVTQF+ +E+ GL+KFDFLGL+ Sbjct: 525 TRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFLGLR 584 Query: 578 TLTLLQKSLDFLAQR----GVK-VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQA 631 TLT++ ++ + +R G+ VD++ IP DD TY + G G +FQ ESSGMR+ Sbjct: 585 TLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGMRRL 644 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 L+ +PD ED+IALVSLYRPGP+D I +N RK+G+E+I+ P + +LK+T G+++Y Sbjct: 645 LKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGIMVY 704 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K+G+ + A IF+ Sbjct: 705 QEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADAIFD 764 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN +K+ F + R Sbjct: 765 LMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDEVRN 824 Query: 812 FNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFC 869 + ++PP VN F+ V + I Y L AIKGVG ++ E + L DFC Sbjct: 825 LGLTVLPPKVNQSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVDERLKGGEYKDLLDFC 884 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +RV S KLNRR LE+++ GALD G++R L+ L + K + + R + ++F Sbjct: 885 TRVGSAKLNRRTLEAMINCGALDELGHNRASLMLQLPEVIKATDQMARERASGQNSLFGG 944 Query: 930 EKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + I L+ E + R E+ LGFY SGHP D ++ +R + Sbjct: 945 PDPS-ATTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDL 994 >gi|71276388|ref|ZP_00652665.1| DNA polymerase III alpha subunit [Xylella fastidiosa Dixon] gi|71162850|gb|EAO12575.1| DNA polymerase III alpha subunit [Xylella fastidiosa Dixon] Length = 1193 Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1054 (39%), Positives = 632/1054 (59%), Gaps = 74/1054 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53 + SFVHL +H+ +SL + + + N+L + PA+A+TD NNLF Sbjct: 3 TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 62 Query: 54 SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 + ++F + A GI+PI G L I ++ TP+ + LL GY L Sbjct: 63 ALIKFYKAAETVGIKPISGADLLIAEPEH--------TPW----GMTLLCRDHTGYLNLS 110 Query: 114 ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 +L+SR +L + V + W+++ + L L G S + + F + +AE++L Sbjct: 111 QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LVGQLFAKGRADLAEQQLA 168 Query: 173 TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++++FGD L++ L R R + +Q+A +P++A+N+ FL D+ AH+ Sbjct: 169 DWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEAR 228 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 229 VCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTY 288 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 LP + + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I + Sbjct: 289 FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 344 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP Sbjct: 345 MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNP 404 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 405 ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 464 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522 VD + KLIP+ ++L+ + + A L A+ V LL ++++LE L Sbjct: 465 LVDSVAKLIPSTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PL++ P++ + R PVTQF+ +E+ GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632 LT++ ++ + +R + VD++ +P DD TY + + T +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L Sbjct: 703 EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 N++++ P++N F+ + I Y L AIKGVG + I++ P+ SL DFC+ Sbjct: 823 NLKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV S KLNRR LE+++ AGALD G +R ++ L + K + + + R + ++F + Sbjct: 883 RVTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNA 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988 + GT + ++ L + + E+ LG YFSGHP D Y+ ++++ G ++ Sbjct: 943 DPGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1002 Query: 989 TI-----RGN----------NIRLAAMVVSKQQK 1007 I RGN N LA +VVS ++K Sbjct: 1003 RILSSQQRGNGEKRTWQPEVNTILAGLVVSVRRK 1036 >gi|260913108|ref|ZP_05919590.1| DNA-directed DNA polymerase III alpha subunit [Pasteurella dagmatis ATCC 43325] gi|260632695|gb|EEX50864.1| DNA-directed DNA polymerase III alpha subunit [Pasteurella dagmatis ATCC 43325] Length = 1143 Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1045 (40%), Positives = 607/1045 (58%), Gaps = 66/1045 (6%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 ++ G + ++ + A+ +TD N + F +A ++GI+PIIG + + Sbjct: 1 MINGIAKVKPLVKACVENNMVAMGLTDFTNFCGLVRFYGEALSSGIKPIIGADVLV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIG 140 K G F + LL GYQ + L+S+ Y ++G Q + I WL E Sbjct: 57 --KSALCGDERF----ELTLLAKNNTGYQNITLLLSKAY--ERGYQDLPYIDQEWLIE-H 107 Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200 EGLI+L+GG +G + + + E + +++ F + Y++L R R+ E + Sbjct: 108 REGLIILSGGHNGDVGKKLLKGNQAEIESAVHFYQEYFPEHFYLSLSRT---GRHEEERY 164 Query: 201 VQLAYTHE----LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLK 255 V LA + LP+VATN+ LFL EED+EAH++ +A+ S + RP++ T Y + Sbjct: 165 VSLAIKYAEQKGLPVVATNDVLFLEEEDFEAHEIRVAIHDSYTLDDPKRPKIYTSQQYFR 224 Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315 + EM +FSD+P ALENT+ IA+RC+ +++ LP+F + E L K+ Sbjct: 225 SEQEMCELFSDVPSALENTLLIAQRCNVTIRLGEYFLPKFPTGDLS-----TEAFLVKKS 279 Query: 316 VAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 GLE RL + +Y +RL EL+VI +M F GYFLIV +FIQW+K N+I Sbjct: 280 KEGLEERLQVLFPDEKVRQERRSEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDI 339 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI Sbjct: 340 PVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 399 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A Sbjct: 400 HVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAF 458 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 A + + + +D V L+++++KLEG+ R+A HA G+VI ++ P+Y D Sbjct: 459 AAEPQLQVVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGK 518 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHE 607 PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R K VD+S IP DD E Sbjct: 519 HPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKPLVDISTIPLDDPE 578 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 ++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+++ +V N +RK Sbjct: 579 SFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFIDRK 638 Query: 666 NGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 +G E + H + P+L+ T GVI+YQEQVMQIAQ L+GY+L AD+LRRAMGKK Sbjct: 639 HGNEPVAYPDPEYQHESLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKK 698 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM Q+E F GA + G+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K Sbjct: 699 KPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 758 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSL 839 THYP EF+AA MT EMDN +KI + + +++ PP +NT F V +N I Y + Sbjct: 759 THYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVAPPDINTGKHHFSVNENSEIVYGI 818 Query: 840 AAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKGVG ++ A F L D C+RVD KK+NRR ESL+ +GA D G R Sbjct: 819 GAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSGAFDKLGPHR 878 Query: 899 MQLLQSLDNIQKYAQWVEKNR-----------TNKHENIFAHEKGTFSDKITLEKFSVEN 947 L ++L++ K + K+ T +HE++ EK S EK Sbjct: 879 AALSKNLEDALKASDQHAKDEALGQTDMFGVLTERHEDV---EKAYASTPRWSEK----- 930 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 V + E+ LG Y S HP+ Y L ++ RG ++ +VV+ + Sbjct: 931 --VILDGERETLGLYLSSHPISPYIKELEHYSSTRLKDLAPNYRGQLSTVSGLVVASRVA 988 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 T+KG+R+G T + + + F Sbjct: 989 ITKKGNRLGIATLDDRSGRLDITLF 1013 >gi|34581196|ref|ZP_00142676.1| DNA polymerase III alpha chain [Rickettsia sibirica 246] gi|28262581|gb|EAA26085.1| DNA polymerase III alpha chain [Rickettsia sibirica 246] Length = 1181 Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1084 (38%), Positives = 632/1084 (58%), Gaps = 85/1084 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I K I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + + + A +++ GDR Y + R Sbjct: 111 DHIGFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +++ E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM+ +FSDLP A++NTV + RC F + P+LP F K+ E Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDIS-----E 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + ++ A GL RLA ++ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVSL QA+ + A + + +++ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAA+Y Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-------- 822 VISYQTA++K +YP FL A + LE++N +KI F Q+A+ I+I+ P++N Sbjct: 765 VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824 Query: 823 --------------TPCVDFKVGD--------------NRIYYSLAAIKGVGTTTARHIM 854 P +D + + I ++L AIKGV + + Sbjct: 825 KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884 Query: 855 -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 E A F S+ DF R+ K +N ++LE+L+ +G D +R+QLL S+ + Y+ Sbjct: 885 DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944 Query: 914 -WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + E+ +N+ I + + S I + + +++ F E +G + S HPL Y+ Sbjct: 945 AYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAF-YEFEAMGLFISNHPLTEYQ 1000 Query: 973 PILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYE 1028 I ++ I + + N + LA ++ Q+K +R +R +VT S+P +E Sbjct: 1001 EIFSRLNILNIADLHNNLPDGTNRVNLAGVI---QKKDSRMSARGRFVTLVLSDPENIFE 1057 Query: 1029 ANFF 1032 + F Sbjct: 1058 LSIF 1061 >gi|327399548|ref|YP_004340417.1| DNA polymerase III subunit alpha [Hippea maritima DSM 10411] gi|327182177|gb|AEA34358.1| DNA polymerase III, alpha subunit [Hippea maritima DSM 10411] Length = 1133 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1035 (39%), Positives = 625/1035 (60%), Gaps = 36/1035 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL HS YSLL+GA + ++++K PA+A+TD N+F ALEF + A + GI+P Sbjct: 2 AFVHLHNHSEYSLLDGASRIKHMVEKAKNSGMPAVALTDHGNMFGALEFYKTAKSNGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + I +G I LL +GY+ ++ L S M L Sbjct: 62 ILGFEGYISPTTLDDKQTKGNY------HITLLAKNKKGYENIMYLCS-MAFLKGFYYKP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI + L+E +EG+I + G + N + A+K + +K++FG + ++ + R Sbjct: 115 RIDKNLLRE-HSEGIIAGSACLHGEVQLRLLDNDFEGAKKVVQEYKEIFGKENFFLEIMR 173 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ R + ++++L + P+VATN+ +L++ED A D L+ V + + +DR + Sbjct: 174 HGLEDQQRIDKEIIRLGLETDTPIVATNDCHYLNKEDAIAQDALLCVQTNKHLDDQDRMK 233 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + + Y K EM+ +F D PE + N+ IA C+ L++ P + + D Sbjct: 234 MGSQEFYFKTEEEMLEVFKDNPEFVHNSKVIADMCNVELELGKLAPPHYRTPDGSD---- 289 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ LR A GLE + A K + Y++RL+ EL +I +M FSGYFLIV DF+ + Sbjct: 290 EKEYLRRLAYKGLEEKTAGFDNGK---KELYKKRLEHELAIIEQMGFSGYFLIVWDFVNY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+N IPVGPGRGS AGS+ +Y++ ITDIDP++++LLFERFLNP+R++MPD D+DFC +R Sbjct: 347 AKRNGIPVGPGRGSAAGSLVSYSIGITDIDPIKYNLLFERFLNPERVTMPDIDVDFCAER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV+ KYG VAQ+ITFG++ AKA +RDV R + PY + DR+ K+IPN Sbjct: 407 RDEVIHYVREKYGEYNVAQVITFGTMGAKAVVRDVARVMGFPYKEADRIAKMIPNGEDLD 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 AI +++ ++ D +V +L EIS+ LEG+ RHAS HAAG+VI P+ + P+Y Sbjct: 467 ---GAIKSNTQLKQEIEKDDNVKKLFEISKTLEGVKRHASIHAAGVVISTEPIYKSCPLY 523 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 + D QF+ ++E GLIKFDFLGLK LT++ ++ + G D+S IP DD Sbjct: 524 KAPGEDTIAVQFSKDFLEDIGLIKFDFLGLKNLTVIDTTVKLI---GNGFDISKIPLDDK 580 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664 ETY LL TLG+FQLESSGM++ + ++P ED+IALV+LYRPGP+ + +V + +R Sbjct: 581 ETYKLLQKGDTLGVFQLESSGMQRLIMDLKPTVFEDLIALVALYRPGPLGSGMVQDFIDR 640 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK+ I P ++ +LK+T G+I+YQEQVMQIA L+GYSL EAD+LRRAMGKK KE Sbjct: 641 KHGKKPIEYPLPELEGILKDTYGIILYQEQVMQIASKLAGYSLGEADILRRAMGKKKKEV 700 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MD+Q+ F+ A + G+SK A IF+L+AKFA+YGFNKSH+AAYA I+YQTA++K HYP Sbjct: 701 MDQQRGIFVKRAVERGVSKEKAEEIFDLMAKFAEYGFNKSHSAAYAYIAYQTAYLKAHYP 760 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLA 840 F++A +T E +N + I K+ ++ + I ++PP +N DF V G I + + Sbjct: 761 AYFMSALLTSEKNNTDNIAKYIEECNRMKITVLPPDINDSFHDFAVAEKDGKKVIRFGFS 820 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIK VG +I+E + F+S+ DF R D++K+N++VLESL+ +G D +R Sbjct: 821 AIKNVGDAAIENIIEIRKESKFESIFDFLKRTDTRKVNKKVLESLIKSGCFDSLHQNRAT 880 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR--FENEQRV 958 LL S+D + WV N ++ + A T ++ E VE + E E+ + Sbjct: 881 LLASVDVL---LDWVSTNAKKANKKMVALFGSTKQEEAYPELIDVEELTQEKILEYEREL 937 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LGF+ S +PL Y+ ++ + I E+ +T+ + +A + V+ ++ KT++ + V Sbjct: 938 LGFFVSSNPLSKYENMVNAV-ITADSETASTVFDKEVVMAGIPVAIRKMKTKRKESMAIV 996 Query: 1019 TFSEPAKEYEANFFP 1033 F + +EA FP Sbjct: 997 KFMDLKGTFEATVFP 1011 >gi|329893785|ref|ZP_08269873.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088] gi|328923508|gb|EGG30822.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088] Length = 1160 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1049 (39%), Positives = 611/1049 (58%), Gaps = 47/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ YSL++G + + ++ K+A PA+A+TD N F ++ + A AG++PI Sbjct: 4 FVHLRLHTEYSLIDGIVRIKPLMSKVAELGMPAVAVTDFCNFFGLVKAYKAALGAGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G I L T++ +P + LLV++ EGY L L+S+ Y Q Sbjct: 64 FGADFLIS---GLAETDR------ALP-LTLLVTSLEGYANLTRLISKAYQEGQRLGVPY 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 I WL E GLI L+GG G + + N +A + + LF R Y+ +QR Sbjct: 114 IEYEWLTEF-QGGLIALSGGREGQLGQLLLANKQDLALEHASQWMALFPGRFYIEIQRTG 172 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + V+LA + P+VATN+ FL +++EAH+ + + + RPR Sbjct: 173 RDNEEPYIHEAVKLASALQCPIVATNDVRFLQADEFEAHEARVCIGEGRTLDDPRRPRNY 232 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDDIQK 305 T YL++ EM +F DLPEAL NTVEIA+RC+ IL + P LP + E D + Sbjct: 233 TDQQYLRSPQEMAELFQDLPEALANTVEIAKRCNLILNLGTPYLPEYPVPEGMTMDQYFR 292 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + +E + + G R+ + QDY RL+ EL++I +M F GYFLIV DFI+ Sbjct: 293 QLSHEGLAQRIGGQGERIPD----PRFSHQDYIDRLNIELDIIIQMGFPGYFLIVMDFIR 348 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+DFC D Sbjct: 349 WAKEHDIPVGPGRGSGAGSLVAYVLLITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMD 408 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV YG + V+QIITFG++ AKA +RDV R Y D+L KLIP + Sbjct: 409 RRDEVIDYVATHYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVGM 468 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++ +A+ + R+ D + +++ +LEG+ R+ HA G+VI L P+ Sbjct: 469 TLA-KAVEQEEALRDFLRDDSQAQEIWDMACQLEGITRNVGKHAGGVVIAPSKLVDFSPL 527 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVDLSL 600 Y D VTQ++ +E AGL+KFDFLGL+TLT++ ++ + R V +D++ Sbjct: 528 YCDETGGGLVTQYDKNDVEDAGLVKFDFLGLRTLTIIAWAIKMINPRRVAHGEQALDINQ 587 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD+ + LL T +FQLES GM+ ++ ++PD EDIIALV+L+RPGP+ + +V Sbjct: 588 IPLDDNAVFQLLQQADTTAVFQLESRGMKDLIKRLRPDNFEDIIALVALFRPGPLQSGMV 647 Query: 661 YN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 N NRK+G+E I H + P+L T G+I+YQEQVMQIAQ+L+GY+L AD+L Sbjct: 648 DNFINRKHGREAIAYPDAHYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTLGGADML 707 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM KQ+E F SGA++ GI +A+ IF+L+ KFA YGFNKSH+AAYA++S Sbjct: 708 RRAMGKKKPEEMAKQREVFQSGAAERGIDPELAIRIFDLVEKFAGYGFNKSHSAAYALVS 767 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832 YQTAW+K HYP EF+AA M+ E+ N +KI F ++ R + + P VN F V D Sbjct: 768 YQTAWLKVHYPAEFMAAVMSSELQNTDKIVIFIEECRAMGLPLKLPDVNEGRYAFTVNDL 827 Query: 833 NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG+G I+ E A+ PF L DFC+R D + LN+R +E+LV AGA Sbjct: 828 GEIVYGLGAIKGLGEGPVEAILRERDANGPFRDLFDFCARTDRRLLNKRAIEALVRAGAF 887 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVE--- 946 D R L+ ++D+ K A+ N + +++F +D F Sbjct: 888 DSLSEPRWVLMAAVDDAVKAAEQKASNTASGIDDLFGEVMPSAPSADGNVYAAFRSARPW 947 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN---NIRLAAMVVS 1003 + R E+ LG Y +GHP+D Y+ +R+ +A +R + + R+ ++V+ Sbjct: 948 SGRERLSGEKDTLGLYVTGHPIDDYEREIRQF----VPTKIADLRADGKSSQRIVGLIVA 1003 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + KT++G + VT + + EA + Sbjct: 1004 VRTMKTKRGDTMAIVTLDDRSARIEATVY 1032 >gi|229587140|ref|YP_002845641.1| DNA polymerase III subunit alpha [Rickettsia africae ESF-5] gi|228022190|gb|ACP53898.1| DNA polymerase III alpha chain [Rickettsia africae ESF-5] Length = 1181 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1084 (38%), Positives = 631/1084 (58%), Gaps = 85/1084 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I K I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + + A +++ GDR Y + R Sbjct: 111 DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEAKAMLFARKLQEILGDRFYFEIMR 169 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +++ E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM+ +FSDLP A++NTV + RC F + P+LP F K+ E Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDI-----SE 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + ++ A GL RLA ++ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVSL QA+ + A + + +++ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGL+KFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLVKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAA+Y Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-------- 822 VISYQTA++K +YP FL A + LE++N +KI F Q+A+ I+I+ P++N Sbjct: 765 VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824 Query: 823 --------------TPCVDFKVGD--------------NRIYYSLAAIKGVGTTTARHIM 854 P +D + + I ++L AIKGV + + Sbjct: 825 KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884 Query: 855 -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 E A F S+ DF R+ K +N ++LE+L+ +G D +R+QLL S+ + Y+ Sbjct: 885 DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944 Query: 914 -WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + E+ +N+ I + + S I + + +++ F E +G + S HPL Y+ Sbjct: 945 AYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAFY-EFEAMGLFISNHPLTEYQ 1000 Query: 973 PILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYE 1028 I ++ I + + N + LA ++ Q+K +R +R +VT S+P +E Sbjct: 1001 AIFSRLNILNTADLHNNLPDGTNRVNLAGVI---QKKDSRMSARGRFVTLVLSDPENIFE 1057 Query: 1029 ANFF 1032 + F Sbjct: 1058 LSIF 1061 >gi|134296501|ref|YP_001120236.1| DNA polymerase III subunit alpha [Burkholderia vietnamiensis G4] gi|134139658|gb|ABO55401.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4] Length = 1177 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1032 (40%), Positives = 614/1032 (59%), Gaps = 60/1032 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNPDDRDKPS--RLLLLVKDKTGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL ++GL+ L+G G I A + + A + + ++F Y+ LQR Sbjct: 114 AELDASWLDGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAEVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + +LP+VAT+ F++E+D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAATLAASLQLPVVATHPMQFMTEDDFTAHEARVCISEGDMLANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T Y + + +MV++F+D+P A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTAQYFRTQDDMVALFADIPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLEKRLEQLYPDVAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 529 FCPLYTQGDDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPTKADWSL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ LL T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQLLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-------VG 831 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVTNNLVVLPPDINQSHYRFEPVAQADGTR 828 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +KPF L DFC RVD + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKPFADLFDFCERVDRRIVNRRTVEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 D +R Q+L S+ A + + H + E + DK Sbjct: 889 DSLNPNRAQMLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEP-AWDDK---- 943 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAM 1000 R + E+ LGFY SGH D Y+ +R+ + V ++ G + +A + Sbjct: 944 --------RRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKVGDLKEGRDKLVAGI 991 Query: 1001 VVSKQQKKTRKG 1012 + S + + T++G Sbjct: 992 IASLRTQMTQRG 1003 >gi|261855201|ref|YP_003262484.1| DNA polymerase III subunit alpha [Halothiobacillus neapolitanus c2] gi|261835670|gb|ACX95437.1| DNA polymerase III, alpha subunit [Halothiobacillus neapolitanus c2] Length = 1168 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/993 (40%), Positives = 584/993 (58%), Gaps = 42/993 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ +SL++G L + +L PA+A+TD NLF+ ++F + A +GI+P Sbjct: 2 SFVHLHLHTEFSLIDGTLRIKPMLAAAKERGLPALALTDQANLFAMVKFYEAARKSGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G D L + G TP+ +VLL G++ L EL+SR Y Q + Sbjct: 62 ILGA-------DCLVVDEPGSTPY----RVVLLAQNNLGFRHLTELLSRGYCEGQIQDRP 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + WL + GLI L+GG G I + ++ + + + + F DR Y+ L R Sbjct: 111 MLRREWLTQEQCAGLIALSGGHLGEIGQLLLHGKARERKAAIKFWTERFPDRFYLELTRC 170 Query: 190 RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 D + V+LA +LP+VATN+ FL +E++EAH+V + + V+ RP Sbjct: 171 GRPDEEKYLHAAVELAEQAQLPVVATNDVRFLDQENFEAHEVRVCIQQGRVLDDPRRPHD 230 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T YL+ EM ++F+D+PEA+EN++ +A RC+ LQ+ LP F + E Sbjct: 231 YTALQYLRPADEMQALFADIPEAIENSLAVAERCNVTLQLGKNFLPNFPTPNGE----TE 286 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + GL R + + YR+RL+ EL+VI +M FSGYFLIVADFIQWA Sbjct: 287 ADYLRTLSEQGLAHRFER---VPAEQHEAYRERLNIELDVIIQMGFSGYFLIVADFIQWA 343 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+ IPVGPGRGSGAGS+ A+AL ITDIDP+ + LLFERFLNP+R+SMPDFDIDFC + R Sbjct: 344 KRQGIPVGPGRGSGAGSLVAWALLITDIDPIPYDLLFERFLNPERVSMPDFDIDFCMEGR 403 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV +YG V+QI T G++ AKA +RDVGR + PY VDR+ KLIP P V Sbjct: 404 DRVIDYVAERYGRAAVSQIATHGTMAAKAVVRDVGRVMSYPYGFVDRIAKLIPMKPGLDV 463 Query: 488 SLQ-AIADDSR-----------FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 +L+ A+ R FR+ D V ++++ LEGL R+ HA G+VI Sbjct: 464 TLEDALGRTERSQKEQERFSQEFRDLYERDEEVRAIVDMGMALEGLSRNVGKHAGGVVIA 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 L+ PMY + +Q + +E GL+KFDFLGL+ LT++ +L + K Sbjct: 524 PSKLTDFTPMYCESNGASAASQLDKDDVEAVGLVKFDFLGLRNLTIIDWALGSINATRQK 583 Query: 596 -----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 VD+++IP DD +++LL T +FQLES GM+ + +QPD EDIIALV+L+ Sbjct: 584 VGKEPVDITVIPLDDKPSFNLLKRCETTAVFQLESRGMKDLIRRLQPDTFEDIIALVALF 643 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+ + +V + RK G++KI +HP + +LK T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 644 RPGPLQSGMVDDFILRKKGEQKIEYLHPWLTDVLKPTYGVIVYQEQVMQIAQILAGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+E F+ GA + T A IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADLLRRAMGKKKPEEMAKQREIFLEGAKSKQVDPTQAGYIFDLMEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++YQTAW+K HYP F+AA ++ +MDN +KI + ++ + ++PP VN F Sbjct: 764 YALVAYQTAWLKAHYPAHFMAAVLSADMDNTDKIVGLIGECQRMGLNVIPPDVNHCAYKF 823 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 + D + + Y L AIKGVG + I+E A PF + DFC RV S+ LN+RVLE++V Sbjct: 824 QALDEHTVVYGLGAIKGVGEGVIQKIVEERQAGAPFVDMNDFCHRVGSQALNKRVLEAMV 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSV 945 AGALD G +R L + + K A ++ ++F + + ++ + Sbjct: 884 LAGALDTLGPNRASLFAHIPDAMKAASQIQAAEAAGMGDLFGGFDAPETAIRVPIPALEP 943 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + E+ LG Y +GHP+ ++ L+ + Sbjct: 944 WPDAEQLRKEKDTLGLYLTGHPIHAFRDELKSL 976 >gi|186476833|ref|YP_001858303.1| DNA polymerase III subunit alpha [Burkholderia phymatum STM815] gi|184193292|gb|ACC71257.1| DNA polymerase III, alpha subunit [Burkholderia phymatum STM815] Length = 1187 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1033 (39%), Positives = 616/1033 (59%), Gaps = 62/1033 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + +++++D A D Q A+A+TD N F + F ++A G++ Sbjct: 7 PRFVHLRVHSEFSIADGIVRIDDVVDAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 67 PIAGC--------DVWITNPDDRDKPS--RLLLLVRNKTGYLNLCELLSKAWLTNQYRGR 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + +WL+ EGL+ L+G G + A + + A++ + ++F + Y+ LQR Sbjct: 117 AEVETAWLESGLAEGLLALSGAQHGDVGLALAAGNQEAAQRNAQRWAQIFPNGFYIELQR 176 Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 G + Y + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ R Sbjct: 177 GGQAGAEAYVQ-QAVALAASLKLPVVATHPLQFMTPDDFTAHEARVCISEGDILANPRRQ 235 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y + + EM+++++D+P A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 236 KRFTTDQYFRTQDEMIALYADIPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293 Query: 306 EEENELRNKAVAGLEVRLAQ--------GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 ++ L + GLE RL Q A +GY+A RLDFE I +M F GYF Sbjct: 294 --DDYLVQLSKEGLEKRLEQLFPEQAERDAQREGYYA-----RLDFECGTIIKMGFPGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPD Sbjct: 347 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 407 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 466 Query: 478 LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ A+ ++ +E + V +LLE++Q++EGL R+ HA G++I Sbjct: 467 LIPFKPGKHVTIADAMKEEPLLKERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L Sbjct: 527 GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L+ +P DD + +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPG Sbjct: 587 ENWSLAQVPLDDPAAFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 647 PMDLIPSFCARKHGRETVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K +E F GA++NG+++ A F+L+ KFA YGFNKSHAAAYA+++ Sbjct: 707 RRAMGKKKPEEMAKHREIFAEGAARNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLA 766 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--- 830 Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + ++PP +N F+ Sbjct: 767 YHTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDINLSAYRFEPVAE 826 Query: 831 GDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 D + I Y L AIKG G I+ A + PF + DFC+R+D + +NRR +E+L+ Sbjct: 827 ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEGPFVDIFDFCNRIDRRVVNRRTIEALI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF------SDKITL 940 AGA D +R QL+ S+ + A N A + G F S L Sbjct: 887 RAGAFDSLHENRAQLIASVSLAMEAADQASAN---------AMQAGLFDIGDAPSQGHEL 937 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAA 999 R + E+ LGFY SGH D YK +R+ + + ++ G + +A Sbjct: 938 VDEPAWPDKRRLQEEKTALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAG 993 Query: 1000 MVVSKQQKKTRKG 1012 ++VS + + T++G Sbjct: 994 VIVSLRTQMTQRG 1006 >gi|71898629|ref|ZP_00680799.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1] gi|71731576|gb|EAO33637.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1] Length = 1193 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1054 (39%), Positives = 632/1054 (59%), Gaps = 74/1054 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53 + SFVHL +H+ +SL + + + N+L + PA+A+TD NNLF Sbjct: 3 TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 62 Query: 54 SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 + ++F + A GI+PI G L I ++ TP+ + LL GY L Sbjct: 63 ALIKFYKAAETVGIKPISGADLLIAEPEH--------TPW----GMTLLCRDHTGYLNLS 110 Query: 114 ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 +L+SR +L + V + W+++ + L L G S + + F + +AE++L Sbjct: 111 QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LVGQLFAKGRADLAEQQLA 168 Query: 173 TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++++FGD L++ L R R + +Q+A +P++A+N+ FL D+ AH+ Sbjct: 169 DWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEAR 228 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 229 VCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTY 288 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 LP + + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I + Sbjct: 289 FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 344 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP Sbjct: 345 MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNP 404 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 405 ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 464 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522 VD + KLIP+ ++L+ + + A L A+ V LL ++++LE L Sbjct: 465 LVDSVAKLIPSTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PL++ P++ + R PVTQF+ +E+ GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632 LT++ ++ + +R + VD++ +P DD TY + + T +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L Sbjct: 703 EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 N++++ P++N F+ + I Y L AIKGVG + I++ P+ SL DFC+ Sbjct: 823 NLKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV S KLNRR LE+++ AGALD G +R ++ L + K + + + R + ++F + Sbjct: 883 RVTSAKLNRRALEAMIQAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNA 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988 + GT + ++ L + + E+ LG YFSGHP D Y+ ++++ G ++ Sbjct: 943 DPGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1002 Query: 989 TI-----RGN----------NIRLAAMVVSKQQK 1007 I RGN N LA +VVS ++K Sbjct: 1003 RILGSQQRGNGEKRTWQSEVNTILAGLVVSVRRK 1036 >gi|311105199|ref|YP_003978052.1| DNA polymerase III subunit alpha 1 [Achromobacter xylosoxidans A8] gi|310759888|gb|ADP15337.1| DNA polymerase III, alpha subunit 1 [Achromobacter xylosoxidans A8] Length = 1164 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1000 (40%), Positives = 602/1000 (60%), Gaps = 56/1000 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+++G + + +++ ++A QPA+A+TD +NLF ++F + A AGI+ Sbjct: 10 PPFVHLRVHSEFSVVDGLVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGARGAGIK 69 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PI GC + + D+ P P ++LLV +GY L EL+S+ +L +QGK Sbjct: 70 PIAGCDVWLSNDDD-----------PAKPFRLLLLVRNHQGYLNLCELLSKAFLTNQGKG 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WLQ G EGLI L+GG G + +A ++ A + LF Y+ LQ Sbjct: 119 RAEIRREWLQ--GQEGLIALSGGRGGDVGQALDAGNAVSALALARQWAHLFPGSYYIELQ 176 Query: 188 RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R G + Y ++ ++LA LP+VAT+ FL E +++AH+ + +A +++ R Sbjct: 177 RAGMDGDEAYTQA-ALRLASEAGLPVVATHPVQFLDEFEFQAHEARVCIAEGEILANPRR 235 Query: 246 -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 R + + YL + EM F+D+P AL NTVEIA+RC+ L + P LP F E D Sbjct: 236 VRRFSKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPEGVGLD 295 Query: 302 D--IQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 D +Q EE GLE R L A + + Y +RL +E I +M F GY Sbjct: 296 DYLVQLSEE---------GLEKRMEFLFPDAAERESKREQYYERLRWECKTIIQMGFPGY 346 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SMP Sbjct: 347 FLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMP 406 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFCQD R+ VI YV+ KYG V+QI TFG+L AKA +RD GR L MPY D L Sbjct: 407 DFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLS 466 Query: 477 KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP +P P +L+ + D+ F++ + V L+++++ LEGL R+ HA G++I Sbjct: 467 KLIPFNPMDPWTLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLIA 526 Query: 536 DRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 L+ P+Y + + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ ++ Q Sbjct: 527 PGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNE 586 Query: 595 ---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 D+ + DD Y +L T +FQLES GM++ L+ ++P+ EDIIA+++LYR Sbjct: 587 DKRDFDVMALALDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYR 646 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+++ +V + NRK+G+ + H ++ LK T GVI+YQEQVM I+Q++ GYSL Sbjct: 647 PGPLESGMVDDFVNRKHGRAAVDYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGG 706 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM K +E F GA + G +AV +F+L+ KFA YGFNKSH+AAY Sbjct: 707 ADLLRRAMGKKKPEEMAKHRELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAY 766 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------T 823 A+ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+ ++++PP VN Sbjct: 767 ALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRFE 826 Query: 824 PCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878 P VD + + + Y L A+KG G I+ A + PF +L DFC RV + +N Sbjct: 827 PVVDKHTKNGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVSKQAVN 886 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 RR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + G Sbjct: 887 RRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAE--QAARSANQASLFGDDSGDVVAG- 943 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 L K + + + E+ LG+Y+SGH D ++ +R++ Sbjct: 944 ELAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRRI 983 >gi|325972730|ref|YP_004248921.1| DNA polymerase III subunit alpha [Spirochaeta sp. Buddy] gi|324027968|gb|ADY14727.1| DNA polymerase III, alpha subunit [Spirochaeta sp. Buddy] Length = 1155 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1039 (40%), Positives = 621/1039 (59%), Gaps = 24/1039 (2%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 T+ + FVHL H+ +SLL+GA + + K + ++AITD N+F AL F Sbjct: 6 TEITTQQSRFVHLHNHTDFSLLDGAAPIGRYMAKAKSLGMTSLAITDHGNMFGALRFYNA 65 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 A AGI+PIIGC+ + + + G P ++LL +GY L+EL S Y Sbjct: 66 ARDAGIKPIIGCEFYCNPAGHTERPAPGGRK-PNQYHLILLAINEKGYHNLMELNSLSYT 124 Query: 122 LDQGKQ-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 QG RI L + EG+I L+ G I + + + A++R L F +F D Sbjct: 125 --QGFYFKPRIDDELLVKY-NEGVICLSACLGGEILQHLLNDQYEKAKERALWFSSVFDD 181 Query: 181 -RLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 R Y+ +Q H D+ R + ++ QL+ +PLV TN+ ++ ++D A D+L+ V ++ Sbjct: 182 GRYYLEMQDHNLPDQKRTNPLLKQLSEETGIPLVCTNDIHYIEKDDANAQDLLLCVGTNS 241 Query: 239 VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + DR R + Y+K+ +M SIFS PEALENT +IA RC+ + + P+LP F Sbjct: 242 KKNDPDRMRFPNQEFYMKSEEQMASIFSWCPEALENTGKIADRCNLEIHLPGPLLPDF-- 299 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E + + LR+ + GL+ R + ++ +RLD+EL+VI +MKF GYF Sbjct: 300 -EVPQGFEGPAHYLRHLSHEGLKKRYS-------VVTEELTKRLDYELDVIIKMKFEGYF 351 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV D+IQWAKK++IPVGPGRGSGAGS+ AY++ ITD+DP++++LLFERFLNP+R+SMPD Sbjct: 352 LIVMDYIQWAKKHDIPVGPGRGSGAGSLVAYSIDITDVDPIKYNLLFERFLNPERVSMPD 411 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC +RR EVI YV YG ERVAQI TFG+L+AKA ++DV R L +P+ + + +CK Sbjct: 412 FDIDFCFERRQEVINYVTEHYGTERVAQIATFGTLKAKAVVKDVARVLDIPFDESNNICK 471 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 LIP+DP ++ +A + E L + +++LEGL RH STHAAG+VIG Sbjct: 472 LIPDDPKMTLA-KAFEQNKELVELEQKGGIYAELFDAARRLEGLNRHTSTHAAGVVIGKE 530 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 L VP+YRD ++ TQ+ M IE+ GL+K DFLGLKTLTL++ + D + ++ K Sbjct: 531 ELVNYVPLYRDAKTGAISTQYTMDLIEECGLVKMDFLGLKTLTLIKHTEDLIHKKDPKFT 590 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I D +T+ +L + +FQ ES GM+ L+ +P IED++AL +LYRPGP+ Sbjct: 591 STAIDEKDPKTFEMLCRGDSTAVFQFESQGMQNILKEAKPSNIEDLVALNALYRPGPMAY 650 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I + N K G++ I +P ++ LK T GVI+YQEQVM++AQ+++GYSL AD+LRR M Sbjct: 651 IPQFVNCKLGRQPITYANPELEEELKTTYGVIVYQEQVMKVAQIIAGYSLGGADILRRIM 710 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK ++K+K +FI+GA G S+ A IFE+L FA YGFNKSHA AY+V++YQTA Sbjct: 711 GKKKVAALEKEKVKFIAGAKALGRSEQHAAEIFEMLEPFAGYGFNKSHAVAYSVVAYQTA 770 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YP EF AA++T EM + +K ++ Q A+ ++I+PPSVN F V + +I Y Sbjct: 771 FLKANYPAEFWAANLTNEMGSPDKFSEYLQVAKDQGLEILPPSVNYSDKHFSVVNGKIVY 830 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LA IK VG ++ E A P+ L DF +R+D+K +N ++LESL+ AGA D G Sbjct: 831 GLAGIKNVGEGVVELLVSEREAHGPYKDLLDFLTRLDAKAMNTKLLESLIKAGAFDTLGT 890 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LL++L + Y Q ++ ++F E + T++ + E E+ Sbjct: 891 NRPTLLENLGDAITYVQKRKEATAFGQISLFDDETEASMETFTMKPAEDWKLPEKLEMEK 950 Query: 957 RVLGFYFSGHPLDVYKPIL--RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 +LGFY SGHPLD + + R + E+VA R NI AMV S + T+KG Sbjct: 951 GLLGFYISGHPLDAFSQAINQRVTANTAHLENVAFNRPTNI--IAMVSSIRPFTTQKGGI 1008 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++ ++ ++A FP Sbjct: 1009 MAFLQLTDRNATFDATLFP 1027 >gi|308274799|emb|CBX31398.1| DNA polymerase III subunit alpha [uncultured Desulfobacterium sp.] Length = 1179 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1045 (39%), Positives = 624/1045 (59%), Gaps = 46/1045 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA+ ++ +++ ++AITD ++F ALEF A I+PI Sbjct: 9 FVHLHVHTQYSLLDGAIRFKHLFNRVRDFGMDSVAITDHGSMFGALEFYLNATDNNIKPI 68 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ + + K+T++ + ++LL EGY+ L +L S + L+ R Sbjct: 69 IGCECYLAPR---KLTDKTSQDGKRLSHLILLAENNEGYRNLCKLAS-IAQLEGFYYKPR 124 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189 I LQ+ + GLI L+ G I + + A+ ++ LFG+ Y+ LQ + Sbjct: 125 IDKEVLQKY-SRGLIALSACLHGEIPMLIGEGNIKEADNAARFYQGLFGENNFYLELQNN 183 Query: 190 RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + ++ +V + +PLVATN+ +L++ED AH++L+ + V + Sbjct: 184 GMEIQNKINEALVDMGNRLSIPLVATNDCHYLNKEDARAHEILLCIQTGKTVQDPSHFKF 243 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D Y K+ EM + F+ P+A++NT +IA+RC+ + + P + E + E Sbjct: 244 ETDQLYFKSGEEMNNFFASTPDAIKNTADIAKRCNIDMDFNNYHFPLYTAIEGN----TE 299 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFI 364 + L K + G E A+ I A D YRQRL E++VI M F GYFLIVADFI Sbjct: 300 QELLEQKVLHGFERVFAK--IKSKNPAIDENLYRQRLKHEMSVIISMGFPGYFLIVADFI 357 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AK NNIPVGPGRGS AGS+ AY+L IT++DP+ L+FERFLNP R SMPD D+DFC Sbjct: 358 KYAKDNNIPVGPGRGSAAGSLVAYSLGITNLDPIEHGLIFERFLNPARKSMPDIDVDFCI 417 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + RD+V++YV KYG RV+QI TFGS++ +A +RDVGRAL +P ++D + K+IP+ Sbjct: 418 NGRDKVLKYVVEKYGENRVSQITTFGSMKTRAVIRDVGRALDIPLREIDEIAKMIPD--- 474 Query: 485 HPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPL 539 L DD+ +E RL++ + R L+ I + LEGL RHASTHAAG+VI D+PL Sbjct: 475 ---VLNISLDDALTQEPRLSELARQRSDIAELITICRTLEGLTRHASTHAAGVVISDKPL 531 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598 + +P+YR +L VTQF+MK +EK GL+KFDFLGL+ LT++ +L ++++G D+ Sbjct: 532 DEYLPLYRGKNGEL-VTQFDMKRVEKIGLVKFDFLGLRNLTVIANTLSLISKQGNSPPDI 590 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + D TY LL T G+FQLES GM++ L+ ++P+ EDI ALV+LYRPGPI++ Sbjct: 591 DSLDLTDQATYRLLAEGNTTGVFQLESKGMKELLKRVRPENFEDITALVALYRPGPIESG 650 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 ++ Y RK+G++ + + P ++P+LKET GVI+YQEQVM+IA +++GYS++EAD LR+A Sbjct: 651 MIDDYVERKHGRKSVEYLVPELEPILKETYGVIVYQEQVMKIAGVIAGYSMAEADDLRKA 710 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKKI E M Q+ERF+SGA+ NG+ K A +F L+ KF YGFNKSH+AAYA+I+YQT Sbjct: 711 MGKKIVEIMAAQRERFVSGATANGVPKEKADTLFSLIDKFGGYGFNKSHSAAYALIAYQT 770 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++KTHY VEF+A+ +T EM + + + K+ + + ++PP +N DF V D I Sbjct: 771 AYLKTHYQVEFMASLLTSEMGSTDSVVKYISECSSNGVSVLPPDINESDRDFSVSDRNIR 830 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 + L A+K VG ++E F SL +FC RVD KK+N+RV+ESL+ GA D G Sbjct: 831 FGLVAVKNVGENAIEAVIETRNKDKFTSLFNFCERVDLKKVNKRVIESLIKCGAFDSTGT 890 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954 R +++ LD+ +Y Q V++ + + +F E +F D + + N Sbjct: 891 FRSRMMAILDDAVEYGQRVQREKNSPQIGLFGEMTENESFQDIPRIPEIDEWNEKELLAF 950 Query: 955 EQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 E+ LGFY +GHPL+ YK ++ K + IK + G R ++ + + K Sbjct: 951 EKEYLGFYITGHPLNKYKELIAKYTNTDSLAIKDMND------GEIARFGGIITNIKIIK 1004 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 TRKG + +V + E FP Sbjct: 1005 TRKGDDMAYVVTEDMIGSIETTVFP 1029 >gi|121605816|ref|YP_983145.1| DNA polymerase III subunit alpha [Polaromonas naphthalenivorans CJ2] gi|120594785|gb|ABM38224.1| DNA polymerase III, alpha subunit [Polaromonas naphthalenivorans CJ2] Length = 1173 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1002 (41%), Positives = 596/1002 (59%), Gaps = 39/1002 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ I+ AADQQPA+AITD +NLF ++F ++ G++P+ Sbjct: 5 FVHLRIHTEFSVVDGTNRIDEIVAAAAADQQPALAITDLSNLFGTVKFYKEGRKTGVKPL 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ + GK ++LLV ++GY L EL++R + + + Sbjct: 65 IGA--------DIWLEAPGKEAGAPASRLLLLVQDSQGYLNLCELITRAWTKNVVRDQAV 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L WLQE+ EGLI L+G G + +A S A + L +F R Y+ LQR Sbjct: 117 VKLQWLQEL-NEGLIALSGAQRGAVGQALVQGDSARAMECALHLSGMFPRRFYLELQRS- 174 Query: 191 GY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 G+ D + VQLA +LP+VAT+ FL+ +DYEAH+ + ++ ++ R R Sbjct: 175 GHPEDERHVTAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCISEGEILGNARRVRK 234 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y K+ +M ++F+D+P AL NTVEIA+RCS L++ P+LP F E + + Sbjct: 235 FTREQYFKSADQMKALFADVPSALANTVEIAKRCSLTLELGKPMLPEFPTPEVNGSRMPP 294 Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E+ R+ + GLE RL + +Y RL+FE+N I +M F GYFLIV DFI Sbjct: 295 EDYFRHTSFEGLEERLLHLYPNPAQRDAKRPEYVARLEFEINTILKMGFPGYFLIVGDFI 354 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 QWAK N PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 355 QWAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQ 414 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RD VI YV++KYGH V+QI+TFG++ A+AA+RDVGR L PY D + KLIPN P Sbjct: 415 SNRDRVIDYVKDKYGHAAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPG 474 Query: 485 HPVSLQAIADDSRFR---------EARLAD-----PSVDRLLEISQKLEGLYRHASTHAA 530 V+LQ + D + E LAD V LL++++KLEGL R+ HA Sbjct: 475 QAVTLQLVPADRKKNDKMVYALEAEPVLADRESKEEDVHTLLDLARKLEGLTRNVGMHAG 534 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL- 589 G++I L+ P+Y S V+QF+ +E GL+KFDFLGL TLT+L+ + +F+ Sbjct: 535 GVLIAPGKLTDFCPLYLQPGSTSAVSQFDKNDVEAIGLVKFDFLGLATLTILEIAREFII 594 Query: 590 ----AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 AQ+ K + +P DD Y L T +FQ ES GM++ L+ +PD +ED+IA Sbjct: 595 ARYPAQKDFKFED--LPLDDARVYRLFADGNTEAVFQFESIGMQRMLKDARPDRLEDLIA 652 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 + +LYRPGP+D I Y RK GKE P + PML+ET G+++YQEQVMQ AQ+L GY Sbjct: 653 MNALYRPGPMDLIPTYIARKQGKEVPEYPDPRVKPMLEETYGIMVYQEQVMQTAQILGGY 712 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL AD+LRRAMGKK ++EM + +E F GA NG+++ A +F+L+ KFA YGFNKSH Sbjct: 713 SLGGADMLRRAMGKKDEKEMAQHREIFRKGAGINGLAQEKADEVFDLMEKFAGYGFNKSH 772 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA+++Y TAW+K H+P EF AA+MT+EMD+ +K+K DA++ + P +N Sbjct: 773 SAAYALLAYHTAWLKVHFPAEFFAANMTVEMDDTDKLKILFGDAQKMGLSFEVPDINQGD 832 Query: 826 VDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883 F+ + + Y L AIKG G I+ A + PF SL DFC RVD K+N+R +E Sbjct: 833 YRFEPITAKSVRYGLGAIKGTGQQAIAAIVAARKEGGPFTSLFDFCVRVDRSKMNKRTVE 892 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 +L+ GA D +R +LL S + +A + N + + + L + Sbjct: 893 ALIKGGAFDSLHLNRAELLASSERAFDFAAATQANANQGGLFDMSDSHAASTQEPELVEM 952 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 + R E+ +GFY SGH D + +R+ + E+ Sbjct: 953 PMFGVKARLVLEKTAIGFYLSGHLFDEVEQEVRQFAKRSIED 994 >gi|42523550|ref|NP_968930.1| hypothetical protein Bd2078 [Bdellovibrio bacteriovorus HD100] gi|39575756|emb|CAE79923.1| dnaE [Bdellovibrio bacteriovorus HD100] Length = 1179 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/981 (42%), Positives = 594/981 (60%), Gaps = 37/981 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLLE A + I K AA Q PA+A+TD N+F A+EF ++P Sbjct: 2 SFVHLHVHSEYSLLEAACRVKAIAKKAAAMQMPAVALTDNGNMFGAVEFFFACKDNNVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127 I+G I L+ Q + T P +V L +GY+ L +L S Y +G Sbjct: 62 ILGLDAYIAPGSRLE-KKQDRDQVNTGPRRLVFLAQNNDGYRNLCKLSSIGY--QEGFYW 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI +Q+ E LI LTGG G + +F A ++ K++F DRLY+ + Sbjct: 119 KPRIDYEVIQQY-NENLICLTGGLRGEVAESFLREGPDAALAKIRQLKEIFNDRLYLEMC 177 Query: 188 RH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R +DR +++ + +P+VA+N+ +++++D A +VL+ + + +S + R Sbjct: 178 RTGVAEWDRLNPF-LLEASKITGVPVVASNDVHYMTQDDQMAQEVLICIGSNKTLSDESR 236 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---------HAPILPRF 295 R+ D YLK +M +F+D+PEA+ NT++IA RC ++ H P P Sbjct: 237 FRLGTDEFYLKKPEQMTELFADVPEAIANTLQIAERCDVKFKLKDDQGKPIYHLPTFP-- 294 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARM 351 DD +E+ R KA AGL VR A+G + +Y +RL++EL +I RM Sbjct: 295 ----TDDGLSLKEDIAR-KAKAGLLVRFEEAAARGEMIPEDKIPEYDKRLEYELGIIDRM 349 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F+GYFLIV DFI WAK N+IPVGPGRGSGAGS+ AY L ITD+DPL LLFERFLNP+ Sbjct: 350 GFNGYFLIVQDFINWAKVNDIPVGPGRGSGAGSLVAYVLRITDLDPLPNFLLFERFLNPE 409 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFDIDFCQDRR EVI+YV KYG E V+QIIT+G LQA+AA++DVGR L M + + Sbjct: 410 RISMPDFDIDFCQDRRQEVIQYVTRKYGQESVSQIITYGKLQARAAIKDVGRVLGMTFPE 469 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 VD + KLIP + +A+ + R E +P+V+ L++++Q++EG+ RHA HAAG Sbjct: 470 VDAVTKLIPEKLGINLK-EAMEMEPRIGEMMEMNPTVNTLMDLAQRVEGMVRHAGIHAAG 528 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LA 590 ++I D L + P+Y+ + V Q++MK EK GLIKFDFLGLKTLT + +L L Sbjct: 529 VIIADGQLVRHAPLYKGADGE-QVVQYDMKHAEKIGLIKFDFLGLKTLTHINHALKLILK 587 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 RG K+ +IP D T+ +++ T G+FQ E G+ A ++P D+ A+ SLY Sbjct: 588 NRGKKIQSQMIPMTDAATFEMMSRGDTAGVFQFEGEGITDATRKIRPSSFADVTAITSLY 647 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+ NI + +RK+GK + + +L ET G+++YQEQVM IA ++GYSL EA Sbjct: 648 RPGPMANIPDFTDRKHGKAPVEYLLEDTREVLSETYGIMVYQEQVMGIASRIAGYSLGEA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIKEEMD+ +ERF+ GA + G K + ++F+L+ KFADYGFNKSHAAAY+ Sbjct: 708 DMLRRAMGKKIKEEMDQHRERFMKGAIERGHDKQRSSDLFDLMYKFADYGFNKSHAAAYS 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 V++ QTAW+K HYP EF AA ++ E+ + EKI K+ +DA + + + PSVN F V Sbjct: 768 VVTIQTAWLKCHYPAEFFAALLSTELSDTEKIVKYSKDATKRGLTVRSPSVNFSDYLFDV 827 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESLVF 887 + IY+ L AIKGVG I+EA + P F+SL++F + +D++++N++V+E L+ Sbjct: 828 HGDEIYFGLGAIKGVGQNAVEAIIEARNNLPEKKFNSLDEFFNSIDTRRVNKKVIECLIK 887 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGA D FG R QL+ A ++K+R ++F T K+TLE+ Sbjct: 888 AGAFDGFGAHRAQLVAGYQKYLDRAIGLQKDREMGQSSLFDLGPST-ETKVTLEEVKPWA 946 Query: 948 SSVRFENEQRVLGFYFSGHPL 968 + E+ VLGFY S HPL Sbjct: 947 RTASLTYEKEVLGFYLSDHPL 967 >gi|107023251|ref|YP_621578.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia AU 1054] gi|116690334|ref|YP_835957.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia HI2424] gi|105893440|gb|ABF76605.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia AU 1054] gi|116648423|gb|ABK09064.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424] Length = 1177 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1028 (40%), Positives = 615/1028 (59%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + +++I+ AAD Q A+A+TD N F + F Q+A GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC + I D+ ++ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGCDVWIANPDDRDKPSR----------LLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL +GL+ L+G G I A + + A + + ++F Y+ LQR Sbjct: 114 AELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y + + EM ++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L + L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAEWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +K F L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945 D +R QL+ S+ + A E N E+ AH L Sbjct: 889 DSLNPNRAQLIASVPLAMEAADQAEANAMQAGLFDMGAESPHAH---------ALVDEPA 939 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + R + E+ LGFY SGH D Y+ +R+ + V ++ G + +A ++ S Sbjct: 940 WDDKRRLQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKVGDLKEGRDKLVAGIIASL 995 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 996 RTQMTQRG 1003 >gi|254247600|ref|ZP_04940921.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184] gi|124872376|gb|EAY64092.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184] Length = 1177 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1028 (40%), Positives = 616/1028 (59%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + +++I+ AAD Q A+A+TD N F + F Q+A GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC + I D+ ++ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGCDVWIANPDDRDKPSR----------LLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL +GL+ L+G G I A + + A + + ++F Y+ LQR Sbjct: 114 AELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y + + EM ++F+DLP A+ NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +K F L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945 D +R QL+ S+ + A E N E+ AH L Sbjct: 889 DSLNPNRAQLIASVPLAMEAADQAEANAMQAGLFDMGAESPHAH---------ALVDEPA 939 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + R + E+ LGFY SGH D Y+ +R+ + V ++ G + +A ++ S Sbjct: 940 WDDKRRLQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKVGDLKEGRDKLVAGIIASL 995 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 996 RTQMTQRG 1003 >gi|170691817|ref|ZP_02882981.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M] gi|170143101|gb|EDT11265.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M] Length = 1196 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1028 (40%), Positives = 617/1028 (60%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++++ A D Q A+A+TD N F + F ++A G++ Sbjct: 7 PRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ L +Q + Sbjct: 67 PIAGC--------DVWITNPDDRDKPS--RLLLLVKDRRGYLNLCELLSKASLTNQYRGR 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL+ EGL+ L+G G I A + + A++ L + K+F Y+ LQR Sbjct: 117 AEIEAGWLESGLGEGLLALSGAQQGDIGLALAAGNQEAAKRNALHWAKVFPGGFYIELQR 176 Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 G ++Y + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ R Sbjct: 177 CGQPGGEQYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQ 235 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R TP+ Y + + EM ++F+D+P AL NTVEIA+RC+ L++ P LP F + + Sbjct: 236 KRFTPEQYFRTQDEMTALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + + GLE RL Q + Y QRL+FE I +M F GYFLIVAD Sbjct: 294 --DDYLVHLSKEGLEKRLEQLYPDEAERAAQRDTYYQRLEFECGTIIKMGFPGYFLIVAD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 412 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LLE++Q++EGL R+ HA G++I L+ Sbjct: 472 PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 532 FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSL 591 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPGP+D I Sbjct: 592 AQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 652 PSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM + +E F GA+KNG++ A IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 712 KKKAEEMAQHRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832 +K H+P EF+AA+M+L MD+ +K+K +D + ++PP +N F+ V + Sbjct: 772 LKAHHPAEFMAANMSLAMDDTDKVKILFEDCITNKMTVLPPDINLSAYRFEPVAEPDGKR 831 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A D PF + DFC+R+D + +NRR +E+L+ AGA Sbjct: 832 SKTIRYGLGAIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTVEALIRAGAF 891 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN-- 947 D +R QL+ S+ + A+ N A + G F D + V+ Sbjct: 892 DTLHQNRAQLIASVSLAMEAAEQASAN---------ALQAGLFDMGDAPSQGHELVDEPE 942 Query: 948 --SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + + E+ LGFY SGH D YK +R+ + + ++ G + +A ++ S Sbjct: 943 WPEKKKLQEEKAALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAGIIASL 998 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 999 RTQMTQRG 1006 >gi|94676467|ref|YP_588968.1| DNA polymerase III, alpha subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219617|gb|ABF13776.1| DNA polymerase III, alpha subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 1163 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/988 (40%), Positives = 603/988 (61%), Gaps = 46/988 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSF+HL++HS YS+++G + +++++ K + PA+A+TD NL+ ++F + A + GI+ Sbjct: 4 PSFIHLRIHSDYSIIDGLIKVSSLVKKAVSLNMPALALTDVTNLYGIIKFYKAANSVGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + N + + + + +L + GYQ L L+S+ Y G Sbjct: 64 PIIGADF---LMYNPILGGE-------LTELTILATNYIGYQCLTMLISQAYRRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + +GLI+L+G G + + + Q +K L + + F DR Y+ L R Sbjct: 114 PVIDRDWLIQ-HNQGLIILSGARKGDVGKLLLNDKMQQVKKCLAFYHRYFPDRYYLELIR 172 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246 R + + V LA + LP+VATN+ F+S +D++AH++ +A+ + ++ K Sbjct: 173 TGRLNEEKYLNLAVLLAKKNGLPVVATNDVRFISSDDFQAHNIRVAIHNGCLLDNVKQSY 232 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + Y+++ EM +F D+PEAL N+VEIA RC+ +++ LP+F Sbjct: 233 DYSSQQYIRSEQEMCELFKDIPEALANSVEIAIRCNVTIRLGEYFLPQFYTGNI-----S 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + L A GLE RLA I + Y QRLD EL VI M F GYFLIV +F Sbjct: 288 TNSYLIKCARQGLEERLAFLFPDLIQLKDNRLPYDQRLDQELQVINGMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N+IPVGPGRGSGAGS+ AYAL ITDI+PL F LLFERFLNP+R+SMPDFDIDFC Sbjct: 348 IQWSKDNSIPVGPGRGSGAGSLVAYALKITDINPLPFDLLFERFLNPERISMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PYS V+++ KL+P+DP Sbjct: 408 MEKRDLVINHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGYPYSFVNKISKLVPHDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+A + R+ D +V L+++++KLEG+ R+ HA G+VI ++ Sbjct: 468 GITLD-KALAIAPQLRQIYNVDENVTLLIDLARKLEGVTRNVGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLS 599 P+Y D P+TQF+ IE AGL+KFDFLGL+TLT++ ++L+ + + + ++++ Sbjct: 527 PLYYDSEGKCPLTQFDKNDIEYAGLVKFDFLGLRTLTIINRALEMINKHIHSKLNPIEIT 586 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +++ +L T IFQLES G+++ + +QPDC EDIIAL++L+RPGP+ + + Sbjct: 587 TIPLDDKKSFDMLLCADTTAIFQLESRGIKELIRRLQPDCFEDIIALIALFRPGPLQSGM 646 Query: 660 VYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 V N NRK+G+E I HP + P+L+ T G+I+YQEQVMQIA++L+GY+L EAD+ Sbjct: 647 VDNFINRKHGRETICYPDIQWQHPSLQPILEPTYGIILYQEQVMQIARILAGYTLGEADL 706 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK +EM KQ+ F GA K GI +A+ IF+L+ KFA YGFNKSH+ AYA++ Sbjct: 707 LRRAMGKKEPKEMVKQRAIFKIGAEKMGIESKLAMKIFDLVEKFAGYGFNKSHSTAYALV 766 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQT W+K HYP +F+A++MT ++DN++K+ + + I ++PP++N F V Sbjct: 767 SYQTLWLKAHYPSQFMASAMTADIDNIDKLAILVYECLRMGITVLPPNINISHYYFHVNK 826 Query: 833 N-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 N +I Y L AIKG+G I+EA + F +L D C R +KKLNRR+LE L+ +GA Sbjct: 827 NSQIIYGLGAIKGLGEGPITTILEARNTGGKFSNLLDLCIRTCTKKLNRRILEKLIISGA 886 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 D G R L+ L+ K A K ++F+ T +DK + +S ++ ++ Sbjct: 887 CDQLGSHRAALMNELETALKTADQYTKLNMIGQIDMFS----TQADKQCILDYSHKSKNI 942 Query: 951 R-------FENEQRVLGFYFSGHPLDVY 971 + + EQ LG Y + HP+ Y Sbjct: 943 QPWSKQVILKGEQETLGLYLTSHPIIEY 970 >gi|15893134|ref|NP_360848.1| DNA polymerase III subunit alpha [Rickettsia conorii str. Malish 7] gi|81595527|sp|Q92GB2|DPO3A_RICCN RecName: Full=DNA polymerase III subunit alpha gi|15620342|gb|AAL03749.1| DNA polymerase III alpha chain [Rickettsia conorii str. Malish 7] Length = 1181 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1084 (38%), Positives = 628/1084 (57%), Gaps = 85/1084 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I K I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + + + A +++ GDR Y + R Sbjct: 111 DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +++ E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y K+ EM+ +FSDLP A++NTV + RC F + P+LP F + E Sbjct: 230 VSENCYFKSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATENIS-----E 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + ++ A GL RLA ++ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVSL QA+ + A + + +++ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ + ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAA+Y Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VISYQTA++K +YP FL A + LE++N +KI F Q+A+ I+I+ P++N F V Sbjct: 765 VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824 Query: 831 G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854 I ++L AIKGV + + Sbjct: 825 KFSDTVIPHSVKPVIPRLDRGIQKISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884 Query: 855 -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 E A F S+ DF R+ K +N ++LE+L+ +G D +R+QLL S+ + Y+ Sbjct: 885 DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944 Query: 914 -WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + E+ +N+ I + + S I + + +++ F E +G + S HPL Y+ Sbjct: 945 AYHEEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAFY-EFEAMGLFISNHPLTEYQ 1000 Query: 973 PILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYE 1028 I ++ I + + N + LA ++ Q+K +R +R +VT S+P +E Sbjct: 1001 EIFSRLNILNTADLHNNLPDGTNRVNLAGVI---QKKDSRMSARGRFVTLVLSDPENIFE 1057 Query: 1029 ANFF 1032 + F Sbjct: 1058 LSIF 1061 >gi|146329848|ref|YP_001209597.1| DNA polymerase III, alpha subunit [Dichelobacter nodosus VCS1703A] gi|146233318|gb|ABQ14296.1| DNA polymerase III, alpha subunit [Dichelobacter nodosus VCS1703A] Length = 1175 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1049 (39%), Positives = 611/1049 (58%), Gaps = 47/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V L VHS YSL + L +++I+ +IA+TD NNL++A++F Q A A I+PI Sbjct: 4 YVPLHVHSEYSLNDSLLRIHDIVAFAQTHDLTSIALTDRNNLYAAIKFYQCARRAKIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC D+ ++D + +Q ++LL A G++ L ELVS Y DQ + Sbjct: 64 LGC--DLSIRDEVGQIHQ----------LILLAQNALGFRHLCELVSFAYTHDQTPNEIA 111 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L +GLI L+GG G + +A + A + ++K+F +R Y+ + R Sbjct: 112 VDKTRLTAEQCQGLIALSGGEEGDVGKAIARGDRKHALQCATHWQKIFSNRFYLQIARFG 171 Query: 191 GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 + SQ + ++ + VATN + F + D++ H+ + +A + R R Sbjct: 172 QTEPPLFSQNLAEIGQKLRIAAVATNLACFKTAADFDYHEARVCIASGDTIDNPKRVRRF 231 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 TP H+L+ ++ IF+D P+ L NT IA+RC+ +L + LP F EC DI E Sbjct: 232 TPQHHLRAPQDLAQIFADAPQLLVNTELIAQRCNVVLSLGKHYLPDFPLPECIDI----E 287 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQ 365 L +A GLE RL Q A+ Y++RL EL VI RM+F GYFLIVADFIQ Sbjct: 288 RYLVQEAERGLEERLVQLFPDPQIRAEKTALYQERLQTELAVINRMQFPGYFLIVADFIQ 347 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK +++PVGPGRGSGAGS+ A+ L IT++DP+ + LLFERFLNP+R+SMPDFD+DFC + Sbjct: 348 WAKNHDVPVGPGRGSGAGSLVAFCLKITELDPMAYDLLFERFLNPERVSMPDFDVDFCMN 407 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--- 482 +RD+VIRYV +KYGH++V+QI T G++ AKA +RDVGR L +PY VD++ K++PN Sbjct: 408 KRDDVIRYVADKYGHDKVSQIATHGTMAAKAVIRDVGRVLSLPYPVVDKISKMVPNTLGV 467 Query: 483 --PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 P + F A L D V L++I+ LEGL R+ HA G+VI Sbjct: 468 TLPDALGKTEKSRTHPEFFSAELTKRYEEDEEVKYLIDIALPLEGLARNVGKHAGGVVIA 527 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQR 592 L+ +Y + VTQF+ + IE AGL+KFDFLGL+TLT++ ++++ A Sbjct: 528 PTTLTDFSALYCEHAGSALVTQFDKEDIEAAGLVKFDFLGLRTLTVIDWAVQNVNQYAPA 587 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 K+D+ I DD T+ LL + T +FQLESSGM+ + +QPD ED+IALV+L+RP Sbjct: 588 NEKLDIRQIRDDDEATFQLLKSGKTTAVFQLESSGMKNLIAKLQPDNFEDLIALVALFRP 647 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+ + +V + NRK+G+ K+V HP + +LK T GV++YQEQVMQ+AQ+L+ YSL EA Sbjct: 648 GPLQSGMVDDFINRKHGRAKVVYPHPALAEILKNTYGVMVYQEQVMQVAQILAKYSLGEA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQK F++ AS G+ + +A++IF+L+AKFA+YGFNKSH+AAYA Sbjct: 708 DLLRRAMGKKKPEEMAKQKGTFVARASAGGVDEQVAIDIFDLMAKFAEYGFNKSHSAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+K HYP F+AA +T EMD EKI + + ++I+PPS+N DF + Sbjct: 768 LLSYQTAWLKAHYPAAFMAAVLTSEMDKTEKIVLLIDECHEMGLRILPPSINHSAYDFTI 827 Query: 831 G-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I + L AIKGVG I+ E F SL D C R+D K L R+ LE+L++A Sbjct: 828 NQQGEILFGLGAIKGVGQAVIEQILAERRRGGAFQSLTDLCQRLDLKTLKRKTLETLIYA 887 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947 GA D +R L L K A+ +++ N+ N+F+ + + L + Sbjct: 888 GAFDLIEKNRGALFAVLPQALKLAEQYHQDKKNRQTNMFSLLDAAHCEAHLALNPENSWQ 947 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--------IRLAA 999 + E+ VLG + SGHP V ++R + K E + L Sbjct: 948 PQQQLMWEKSVLGLFLSGHPAQVAAEMIRPICPKNIAEIQHELNQKTPHQGEYHFFYLGG 1007 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 ++V K+ ++KG ++T + + + E Sbjct: 1008 LLVDKRNITSKKGKNFCFITIDDCSGKIE 1036 >gi|78067124|ref|YP_369893.1| DNA polymerase III subunit alpha [Burkholderia sp. 383] gi|77967869|gb|ABB09249.1| DNA polymerase III, alpha subunit [Burkholderia sp. 383] Length = 1176 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1028 (40%), Positives = 615/1028 (59%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + +++I+ AAD Q A+A+TD N F + F Q+A GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC + I D+ ++ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGCDVWIANPDDRDKPSR----------LLLLVKDKVGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL ++GL+ L+G G I A + + A + + K+F Y+ LQR Sbjct: 114 AELDASWLDGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q LA +LP+VAT+ + F++++D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAATLAAALKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y + + +M ++F+DLP A+ NTVE+A+RC+ L++ P LP F + + Sbjct: 233 KRFTTDQYFRTQDDMAALFADLPSAIANTVEVAKRCNLKLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLETRLAQLYPAEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ + +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D +L Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWAL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+ NG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAATNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I+ A +K F L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFSV 945 D +R QL+ S+ + A E N E+ AH L Sbjct: 889 DSLNTNRAQLIASVPLAMEAADQAEANAMQAGLFDMGAESPHAH---------ALVDEPA 939 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + R + E+ LGFY SGH D Y+ +R+ + V ++ G + +A ++ S Sbjct: 940 WDDKRRLQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKVGDLKEGRDKLVAGIIASL 995 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 996 RTQMTQRG 1003 >gi|113866925|ref|YP_725414.1| DNA polymerase III subunit alpha [Ralstonia eutropha H16] gi|113525701|emb|CAJ92046.1| DNA polymerase III alpha subunit [Ralstonia eutropha H16] Length = 1173 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/994 (42%), Positives = 601/994 (60%), Gaps = 43/994 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL++HS YS+++G + L + + AAD A+A+TD N F + + ++A G+ Sbjct: 6 APRFVHLRLHSEYSIVDGIVRLEDAVKAAAADGMGALALTDLANAFGLIRYYKEARGKGV 65 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P++G ++ +TN P+ ++LLV GY L L+SR +L +Q + Sbjct: 66 KPVVGA--------DVWLTNAEDRDKPS--RLLLLVQDRRGYLNLCMLLSRAWLGNQHRG 115 Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 I +W E G + GLI L+G G I A ++ A + + +F R Sbjct: 116 RAEIDPAWFLEPGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWSTVFAQR 175 Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR + G D Y + Q VQLA +LP+VAT+ F++ +DY AH+ + +A + Sbjct: 176 FYIELQRAGNAGTDAYVQ-QAVQLAAELQLPVVATHPVQFMTPDDYTAHEARVCIAEGEL 234 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D Y K + EM ++F+D+P ALEN VEIARRC+ L++ P LP F Sbjct: 235 LANPRRTRRFTTDQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPLFPTP 294 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L A GLE RLA + +Y RL+FE I +M F G Sbjct: 295 DGMSL----DDYLVYMAKDGLEKRLAVLFPDEAVRESKRPEYYARLEFETGTIIKMGFPG 350 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 351 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSM 410 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y VD + Sbjct: 411 PDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGI 470 Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+++ A ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 471 AKLIPFKPGKLVTIEEAKKEEPLLTERESNEEEVRQLLELAQRVEGMTRNVGMHAGGVLI 530 Query: 535 GDRPLSQLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSL 586 L+ P+Y D S + V+Q++ +E AGL+KFDFLGL TLT+L ++ + Sbjct: 531 APGRLTDFCPLYTQGAQNDGMSGV-VSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYI 589 Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 L + S IP DD + +L T T+ +FQLES GM+ L+ +PD EDIIAL Sbjct: 590 RRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIAL 649 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 V+LYRPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYS Sbjct: 650 VALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYS 709 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM + + F GA KNG+S A +IF+L+ KFA YGFNKSHA Sbjct: 710 LGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNKSHA 769 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + + ++PP VN Sbjct: 770 AAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKLAVLPPDVNASEY 829 Query: 827 DFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F D + I Y L IKG G I+ A ++PF L DFC RVD +++NRR +E+L Sbjct: 830 RFAPTDPKTIRYGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEAL 889 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGA D +R QLL S+ + A+ +K + ++F G D E Sbjct: 890 IRAGAFDSLNDNRAQLLASVPIAMEAAE--QKAESANQVSLF-DLMGDAGDAHRPELLDE 946 Query: 946 ENSSVR--FENEQRVLGFYFSGHPLDVYKPILRK 977 S + + E++ LG+YFSGH D Y+ +R+ Sbjct: 947 PRWSPKRTLQEEKQALGYYFSGHLFDAYRDEVRR 980 >gi|285018805|ref|YP_003376516.1| DNA polymerase III, alpha chain protein [Xanthomonas albilineans GPE PC73] gi|283474023|emb|CBA16524.1| probable dna polymerase III, alpha chain protein [Xanthomonas albilineans] Length = 1198 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1010 (40%), Positives = 608/1010 (60%), Gaps = 66/1010 (6%) Query: 11 FVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLFSAL 56 F HL +H+ +SL + + + N+L + PA+A+TD NNLF+ + Sbjct: 6 FAHLHIHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNLFALV 65 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F + A GI+PI G +L + + + P+ + +L +GY L L+ Sbjct: 66 KFYKAAEGVGIKPIAGA--------DLLIADGSQAPW----RLTVLCRNRDGYLSLSRLL 113 Query: 117 SRMYLLDQGKQS---VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +R +L +G +S V + WLQ G++ L L G +S R +AE++L Sbjct: 114 TRAWL--EGHRSEGGVALRPEWLQS-GSDNLFALAGRNS-LAGRLASEGRHDLAEQQLAD 169 Query: 174 FKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 ++++FGD L++ L R R + + A LP+VA+N+ FL D+ AH+ + Sbjct: 170 WQRIFGDGLHLELTRTGRDGEEAFNQFALHAAGMRGLPVVASNDVRFLYASDFAAHEARV 229 Query: 233 AVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 ++ V+ RPR D YLK+ EM ++F+D+P+AL+NT+ +A+RC+ +Q+ Sbjct: 230 CISSGRVLDDPKRPREYSDQQYLKSAEEMAALFADIPDALDNTLALAQRCNLQMQLGTYF 289 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 LP + + + + ++ +R+++ GL RL + +A G QDY +RL+FEL+ I +M Sbjct: 290 LPAYPVPDDETL----DSWIRSQSRDGLAARLEKHPLAPGKTRQDYVERLEFELDTIIKM 345 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+ Sbjct: 346 GFPGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPE 405 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFDIDFC DRRDEVI YV KYG +RV+QIIT+G++ AKA +RD GR L PY Sbjct: 406 RVSMPDFDIDFCMDRRDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDCGRVLGFPYGL 465 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP----------SVDRLLEISQKLEGL 521 VD + KLIPN ++L+ + + ++ +A P V L++++++LE L Sbjct: 466 VDGVAKLIPN--ILGITLKDAMGEGK--DSEMAAPELIQRYQSEEDVRDLIDLARQLEDL 521 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLK 577 R+A HA G+VI PLS P++ + D PVTQF+ +E+ GL+KFDFLGL+ Sbjct: 522 TRNAGKHAGGVVIAPTPLSDFCPLFAEHDVDHLGKNPVTQFDKDDVEQVGLVKFDFLGLR 581 Query: 578 TLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLG-IFQLESSGMRQA 631 TLT++ ++ + R + V+++ IP DD TY + G+ G +FQ ESSGMR+ Sbjct: 582 TLTIIDWAVKAINVRHARAGIPAVEITAIPLDDVPTYKDIFASGSTGAVFQFESSGMRRL 641 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 L+ +PD ED+IALVSLYRPGP+D I +N RK+G++ I+ P + +LK+T G+++Y Sbjct: 642 LKDAKPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQAILYPDPRTEAILKDTYGIMVY 701 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ + A IF+ Sbjct: 702 QEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVGEAKADEIFD 761 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 762 LMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRN 821 Query: 812 FNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFC 869 + + PP +N F+ + I Y L AIKGVG I+ E + SL DFC Sbjct: 822 LGLTVRPPRINASAYMFEAATPDTIQYGLGAIKGVGRGACEAIVAERERGGAYISLMDFC 881 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +RV+S KLN+R LE+L+ AGA+D +R L+ L + K + + + R + ++F + Sbjct: 882 TRVESAKLNKRTLEALIHAGAMDGLDSNRATLMLQLPEVMKATEQMARERASGQNSLFGN 941 Query: 930 -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + + L + E+ LGFY SGHP D Y+ +R++ Sbjct: 942 ADTSAPALHLNLPESKEWPLGQLLAGERETLGFYLSGHPFDPYREEVREL 991 >gi|149907538|ref|ZP_01896285.1| DNA polymerase III subunit alpha [Moritella sp. PE36] gi|149809208|gb|EDM69137.1| DNA polymerase III subunit alpha [Moritella sp. PE36] Length = 1159 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1056 (39%), Positives = 614/1056 (58%), Gaps = 61/1056 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL +HS +S+++ + + + ++ PAIA+TD N+ + ++F AG++ Sbjct: 4 PRFIHLHLHSEFSMVDSLVRMKRLAPRLQELNMPAIALTDQTNMCALVKFYGAMQRAGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D +Q Q K + +L +GY + L+S+ Y Sbjct: 64 PIIGA--DFWVQSEEYPEEQFK--------LTVLAKDNKGYNNITVLISKAYSRGHVDGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EG+I+L+G +G I +A + +A + L ++ F D Y+ L R Sbjct: 114 AIIDKAWLAE-HAEGVILLSGARNGDIGKALLKGNDALARQCLTFYQAHFPDSYYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V A H+LP+VATN+ +FL ++++AH++ +++ + K RPR Sbjct: 173 TGRQDEEAYLHMAVDFASQHQLPVVATNDVVFLHADEFDAHEIRVSIHDGYTLEDKRRPR 232 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDDI 303 + + + YL++ EM +F+D+PEAL N+VEIA+RC+ +++ LP F E D + Sbjct: 233 LYSKEQYLRSEDEMCELFADIPEALANSVEIAKRCNATVRLGEYFLPNFPTGELSTADFL 292 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 K E+ L V L+ A + Y RL+ EL VI M F GYFLIV +F Sbjct: 293 VKVSEDGL----VERLDFLFPDPA-ERERQRPAYEDRLEIELKVINDMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KLIP DP Sbjct: 408 MDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPGDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + R E D V L+++++ LEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAWDVEPRLDEMYQGDEEVRALVDMARILEGVIRNAGKHAGGVVISPTVITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF----LAQRGVK-VDL 598 P+Y D + PVTQF+ +E+AGL+KFDFLGL+TLT++Q +LD L ++G K + + Sbjct: 527 PLYCDDSGNNPVTQFDKNDVEEAGLVKFDFLGLRTLTIIQWALDMANPHLVKQGKKEIRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I D + LL T +FQLES GM+ + ++PD ED+IALV+L+RPGP+ + Sbjct: 587 ESIDITDRRCFDLLQRSETTAVFQLESRGMKDLIRRLKPDSFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIV---------SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +V N +RK+G+E++ S+ ++DP T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 647 MVDNFIDRKHGREEVSYPDAQYQHESLKEILDP----TYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM+KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMEKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKTHYP F+AA M+ +MDN EK+ + + + ++PP VN Sbjct: 763 AYALVSYQTLWMKTHYPSYFMAAVMSADMDNTEKVVTLVDEVERMGLTLLPPDVNKGLFK 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D+ I Y + AIKGVG I+ A + F L DFC+RV+ KK+++R++E L Sbjct: 823 FNVQEDHTIIYGIGAIKGVGEGPIDAIIAARESGGEFTDLFDFCNRVNLKKISKRIMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 ++AGALD G R L +L K A ++F +T E + Sbjct: 883 IYAGALDKLGPHRAALHATLPEAMKAAAQHAMAEAYGQSDLFG--------ILTTEPEEI 934 Query: 946 EN---------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 E+ V E E+ LG Y +GHP++ Y +++ ++ T RG + Sbjct: 935 ESKFADVPEWPDKVWLEGERETLGLYLTGHPINQYIKEVKRYSTNRLKDVKPTERGKVVT 994 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V+S Q K T+KG+R+G + + + FF Sbjct: 995 AVGLVISAQVKVTKKGTRMGILEIDDKSGRLSVMFF 1030 >gi|71900814|ref|ZP_00682933.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1] gi|71729435|gb|EAO31547.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1] Length = 1193 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1054 (39%), Positives = 630/1054 (59%), Gaps = 74/1054 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53 + SFVHL +H+ +SL + + + N+L + PA+A+TD NNLF Sbjct: 3 TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 62 Query: 54 SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 + ++F + A GI+PI G L I ++ P+ + LL GY L Sbjct: 63 ALIKFYKAAETVGIKPISGADLLIAEPEH--------PPW----GMTLLCRDHAGYLNLS 110 Query: 114 ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 +L+SR +L + V + W+++ + L L G S + F + +AE++L Sbjct: 111 QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LAGQLFAKGRADLAEQQLA 168 Query: 173 TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++++FGD L++ L R R + +Q+A +P++A+N+ FL D+ AH+ Sbjct: 169 DWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEAR 228 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 229 VCIASGRMLDDPKRPRTYSEQQYLRSSEEMATLFADIPDALDNTRTLAQRCNIEMRLGTY 288 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 LP + + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I + Sbjct: 289 FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 344 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP Sbjct: 345 MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNP 404 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 405 ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 464 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522 VD + KLIP+ ++L+ + + A L A+ V LL ++++LE L Sbjct: 465 LVDSVAKLIPSTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PL++ P++ + R PVTQF+ +E+ GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632 LT++ ++ + +R + VD++ +P DD TY + + T +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L Sbjct: 703 EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 N++++ P++N F+ + I Y L AIKGVG + I++ P+ SL DFC+ Sbjct: 823 NLKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV S KLNRR LE+++ AGALD G +R ++ L + K + + + R + ++F + Sbjct: 883 RVTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNA 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988 + GT + ++ L + + E+ LG YFSGHP D Y+ ++++ G ++ Sbjct: 943 DPGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1002 Query: 989 TI-----RGN----------NIRLAAMVVSKQQK 1007 I RGN N LA +VVS ++K Sbjct: 1003 RILSSQQRGNGEKRTWQPEVNTILAGLVVSVRRK 1036 >gi|332108545|gb|EGJ09769.1| DNA polymerase III, alpha subunit [Rubrivivax benzoatilyticus JA2] Length = 1169 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1009 (41%), Positives = 582/1009 (57%), Gaps = 68/1009 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ H+ YS+++G L +++ AD QPA+AITD +NLF A++F + AG++PI Sbjct: 3 FVHLRTHTEYSVVDGTLRIDDAAGAAKADGQPALAITDLSNLFGAIKFYKACRGAGVKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVSRMYLLDQG 125 +G + +D P P + LLV GY L EL++R + + Sbjct: 63 VGVDVWMD-------------PLPDAAERQPTRLALLVQDRGGYLNLCELLARAWTKNVQ 109 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + + WL E+ + GLI L+G G + +A Q A +F R Y+ Sbjct: 110 RNQAWVKWEWLHEL-SGGLIALSGADMGAVGQALLAGDEQRAAAAARELASIFPGRFYLE 168 Query: 186 LQR-----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 LQR H + R V LA LP+VAT+ FL +D+EAH+ + +A + Sbjct: 169 LQRAGLPTHEAHVR----AAVPLAARLGLPVVATHPIQFLEPDDFEAHEARVCIAEGETL 224 Query: 241 SQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + R R T + + K ++M S+F+D+P A+ NTVEIARRCS L + P LP F + Sbjct: 225 ANPKRIKRFTREQHFKTAAQMESLFADVPSAIANTVEIARRCSLTLVLGKPRLPDFPTPD 284 Query: 300 CDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 I + R + GLE RL + +Y +RL+FEL+ I +M F GY Sbjct: 285 GSPI----DVYFRKASHEGLEKRLVALFPKEEEREKRRPEYVERLEFELDTILKMGFPGY 340 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV+DFI WAK N PVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R+SMP Sbjct: 341 FLIVSDFIVWAKANGCPVGPGRGSGAGSLVAYALFITDLDPLQYKLLFERFLNPERVSMP 400 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFCQ RD VIRYV+ KYG + V QI TFG++ AKAALRDVGR L M Y VD + Sbjct: 401 DFDIDFCQGNRDRVIRYVKEKYGRDAVGQIATFGTMAAKAALRDVGRVLGMGYGHVDSIA 460 Query: 477 KLIPNDPAHPVSLQAIAD--DSRFREARLADPSVDR----------LLEISQKLEGLYRH 524 KLIP P V+L + + D AR +P +DR LL ++ ++EG+ R+ Sbjct: 461 KLIPAPPGKTVTLAKVPEKPDPGIIYARQEEPEIDRREAAEEEVAELLSLATRVEGMVRN 520 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HA G++I ++ P+Y+ SD V+Q++ +E GL+KFDFLGL TLT+L+ Sbjct: 521 IGMHAGGVLIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEL 580 Query: 585 SLDFL-AQRGVKVDLS--LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 + F+ A+R D S +P DD Y L + T +FQ ES GM+ L +P +E Sbjct: 581 ARQFIVARRPNMKDFSYETLPLDDQRVYKLFSDGLTEAVFQFESRGMQGMLREAKPSRLE 640 Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 D+IAL +LYRPGP+D I + RK+GKE + HPL++ +L ET GV++YQEQVMQ AQ+ Sbjct: 641 DLIALNALYRPGPMDLIPTFVARKHGKETVEYPHPLLETVLGETYGVMVYQEQVMQTAQV 700 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 L GYSL AD+LRRAMGKK EEM + + F GA+K I + A +F+L+ KFA YGF Sbjct: 701 LGGYSLGGADLLRRAMGKKKPEEMAQHRVIFREGAAKKDIPEAKADEVFDLMEKFAGYGF 760 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSHAAAY++++Y TAW+K H EF AA+MT+E DN +K+K DA+ F I+ PP V Sbjct: 761 NKSHAAAYSLLAYHTAWIKVHCTAEFFAANMTIEADNTDKLKVLLADAKLFGIRFDPPDV 820 Query: 822 NTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK------PFDSLEDFCSRVDS 874 NT + F+ + D RI Y L A+KG G I+ A + PF SL DFC+RVD Sbjct: 821 NTGTLRFEPIEDKRIRYGLGAVKGTGAGAIEAIVAAREGRAGDGGGPFRSLFDFCARVDR 880 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FAHEK 931 +++N+RV+E+L+ AGA D R L S + +W + NK + F Sbjct: 881 QRVNKRVVEALIKAGAFDSLHADRAATLAS---VGLAFEWADTQAANKDQGGLFDFGDAH 937 Query: 932 GTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKM 978 G+ + + L +VE SV R E+ +GFY SGH D + +RK Sbjct: 938 GSSTQEPAL--VAVEPWSVRERLMQEKIAIGFYLSGHLFDACRDEVRKF 984 >gi|307729084|ref|YP_003906308.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1003] gi|307583619|gb|ADN57017.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1003] Length = 1199 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1028 (39%), Positives = 620/1028 (60%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++HS +S+ +G + L++++ A D Q A+A+TD N F + F ++A G++ Sbjct: 7 PRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ L +Q + Sbjct: 67 PIAGC--------DVWITNPDDRDKPS--RLLLLVKDRRGYLNLCELLSKASLTNQYRGR 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL+ EGL+ L+G G + A + + A++ L + K+F Y+ LQR Sbjct: 117 AEVEAGWLESGLGEGLLALSGAQQGDVGLALAAGNQEAAKRNALHWAKVFPGGFYIELQR 176 Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 G ++Y + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ R Sbjct: 177 CGQPGGEQYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQ 235 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R TP+ Y + + EMV++F+D+P AL N+VEIA+RC+ L++ P LP F + + Sbjct: 236 KRFTPEQYFRTQDEMVALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + + GLE RLAQ + + Y QRL+FE + +M F GYFLIVAD Sbjct: 294 --DDYLVHLSKQGLETRLAQLYPDEAERAAQRETYYQRLEFECGTVIKMGFPGYFLIVAD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 412 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LLE++Q++EG+ R+ HA G++I L+ Sbjct: 472 PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGITRNVGMHAGGVLIAPGKLTD 531 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 532 FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSL 591 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPGP+D I Sbjct: 592 AQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 652 PSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM + +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 712 KKKPEEMAQHRELFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+M+L MD+ EK+K +D + ++PP +N F+ D + Sbjct: 772 LKAHHPAEFMAANMSLAMDDTEKVKILFEDCIANKMTVLPPDINLSAYRFEPVAEADGKR 831 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A D F + DFC+R+D + +NRR +E+L+ AGA Sbjct: 832 SRTIRYGLGAIKGSGQNAIEEILRAREDGAFIDIFDFCNRIDRRVVNRRTVEALIRAGAF 891 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN-- 947 D +R QL+ S+ + A+ N A + G F D + V+ Sbjct: 892 DSLHANRAQLIASVSLAMEAAEQASAN---------ALQAGLFDMGDAPSQGHELVDEPE 942 Query: 948 --SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + + E+ LGFY SGH D Y+ +R+ + + ++ G + +A +V S Sbjct: 943 WPEKKKLQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKIGELKEGRDKLVAGIVASL 998 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 999 RTQMTQRG 1006 >gi|160898940|ref|YP_001564522.1| DNA polymerase III subunit alpha [Delftia acidovorans SPH-1] gi|160364524|gb|ABX36137.1| DNA polymerase III, alpha subunit [Delftia acidovorans SPH-1] Length = 1194 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1002 (41%), Positives = 580/1002 (57%), Gaps = 51/1002 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G +N I+ A D Q A+A+TD NNLF ++F ++ A G++P+ Sbjct: 19 FVHLRLHTEFSVVDGTNRINAIVKAAAEDGQVALAVTDFNNLFGGVKFYREGRAKGVKPV 78 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ I+ ++ V I++LV + GY L EL++R + + K Sbjct: 79 LGAEIQIEGENG-----------AAVSRIIVLVQSPLGYHNLSELLARGWTRNVVKGQAV 127 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 +WLQE+G EGLI+L G +GP+ +A A +F R ++ LQR Sbjct: 128 HTWAWLQELG-EGLIVLAGAQAGPVGQALMRGDEAGAAAVAQRLASMFPHRFFIELQRAG 186 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D VQLA LP+VAT+ F +DYEAH+ + +A +++ R R Sbjct: 187 RPDDEAHVLAAVQLADRLNLPVVATHPIQFFGPDDYEAHEARVCIAEGEILANPKRVRRF 246 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T D + K ++M ++F+D+P A+ NTVEIARRCS L + P LP F D + +E Sbjct: 247 TRDQHFKTAAQMQALFADIPSAIANTVEIARRCSLTLVLGKPQLPNF--PVPDGMTMDEF 304 Query: 309 NELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R+++ GLE RL + Y +RL+FE+ I +M F GYFLIV DFI+ Sbjct: 305 --FRSESFNGLEDRLTHLYPDPAKREAQRPRYVERLEFEIGTILKMGFPGYFLIVGDFIK 362 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AY L ITD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ Sbjct: 363 WAKLNGCPVGPGRGSGAGSLVAYVLKITDLDPLEYNLLFERFLNPERVSMPDFDVDFCQA 422 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV+ YG + V+QI TFG++ A+AA+RDVGR L M Y+ D + KLIPN P Sbjct: 423 NRDRVIDYVKQLYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 482 Query: 486 PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 V+L+ AI + E + V L+E++QKLEG+ R+ HA G Sbjct: 483 HVTLKYPPNPKKEGDKYTYAIEAEPMLAERIEKEEDVKTLIEMAQKLEGMTRNIGMHAGG 542 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI L+ P+Y+ SD V ++ +E GL+KFDFLGL TLT+L+ + +F+ + Sbjct: 543 VVIAPGKLADFCPLYQQPGSDSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIIK 602 Query: 592 RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R + IP DD TY L + T +FQ ES GM+ L +P +ED+IAL + Sbjct: 603 RHKGQENFAFENIPLDDARTYQLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIALNA 662 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RK+GKE + HPL++ +L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 663 LYRPGPMDLIPSFVARKHGKEVVEYPHPLVEQVLAETYGIMVYQEQVMQTAQVLGGYSLG 722 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM + F GA+K GIS+ A +F+L+ KFA YGFNKSHAAA Sbjct: 723 GADLLRRAMGKKKVEEMVMHRGIFREGAAKQGISEEKADEVFDLMEKFAGYGFNKSHAAA 782 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++Y TAW+K HY EF +MT+EMDN +K+K +DA + I PP VN F Sbjct: 783 YSLLAYHTAWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGISFEPPDVNRGMYRF 842 Query: 829 K-VGDNRIYYSLAAIKGVGTTTARHIMEA---------SADK-PFDSLEDFCSRVDSKKL 877 + V D I Y L AIKG G I+ A ADK PF SL DFC RVD +L Sbjct: 843 EPVTDKVIRYGLGAIKGTGQQAIEAIVAAREGRGVGPRGADKGPFKSLADFCVRVDRTRL 902 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ--WVEKNRTNKHENIFAHEKGTFS 935 N+R LE+L+ GA D +R L+ S+D+ ++ N+ + + G+ + Sbjct: 903 NKRTLEALIKGGAFDAIELNRASLVASIDHAFEFGNKTLANANQGGLFDMMGDDAVGSST 962 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + L + R E+ +GFY SGH D + +R+ Sbjct: 963 QEPPLVEALPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRR 1004 >gi|124267439|ref|YP_001021443.1| DNA polymerase III subunit alpha [Methylibium petroleiphilum PM1] gi|124260214|gb|ABM95208.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1] Length = 1174 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/996 (42%), Positives = 588/996 (59%), Gaps = 46/996 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SPSFVHL+ H+ YS+++G L +++++ AAD+QPA+AITD +NLF A++F A Sbjct: 1 MTSSPSFVHLRTHTEYSVVDGMLRVDDMVAAAAADEQPALAITDLSNLFGAIKFYGAARG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QP+IG L ++ + + K ++ ++LLV GY L EL+S + + Sbjct: 61 KGVQPLIGADLWLEAESDEKQPSR----------LLLLVQNRTGYLNLCELISHAWT--E 108 Query: 125 GKQSVRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 Q + C++W Q +GLI L+G G + A + AE + L LF R Y Sbjct: 109 NLQRHQACVAWPQLAKHGDGLIALSGADLGAVGLALLAGDAVRAEAQALRLAALFPGRFY 168 Query: 184 VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQR + + + VV LA LP+VAT+ FLS +D+EAH+ + +A ++ Sbjct: 169 LELQRAGQAGNEAQVRAVVPLAAKLGLPVVATHPVQFLSADDFEAHEARVCIAEGETLTN 228 Query: 243 KDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R R T + + K ++MV +F+D+P A+ NT+ IARRC L + P LP F D Sbjct: 229 PRRVKRFTREQHFKTAAQMVELFADIPSAIANTLAIARRCHLTLTLGKPQLPDFPTPIVD 288 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + ++ R+ + AGL RLAQ + H Y +RLDFE+ I +M F GYFL Sbjct: 289 GQRMAPDDYFRHASHAGLNERLAQLYPNEDERERHRARYVERLDFEIETILKMGFPGYFL 348 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFI WAK N PVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNPDR+SMPDF Sbjct: 349 IVADFINWAKGNGCPVGPGRGSGAGSLVAYALKITDLDPLAYNLLFERFLNPDRVSMPDF 408 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAALRDVGR L M Y VD + KL Sbjct: 409 DIDFCQGNRDRVIDYVKQKYGRDAVSQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKL 468 Query: 479 IPNDPAHPVSLQAIAD--DSRFREARLADPSVDR----------LLEISQKLEGLYRHAS 526 +P P V+L+ D D AR P +++ LL +++++EG R+ Sbjct: 469 VPAPPGKTVTLKRPGDRPDPGLIYARKEAPEIEQREQKEEEVAELLALAERVEGTVRNIG 528 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA G++I ++ P+Y+ SD V+Q++ +E GL+KFDFLGL TLT+L+ + Sbjct: 529 MHAGGVLIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAK 588 Query: 587 DFLAQRGV-KVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 DF+ R + D + I DD +TY LL+ T+ +FQLES GM+ L +P EDI Sbjct: 589 DFIRTRHADRADFAFENIALDDRKTYQLLSEGKTVAVFQLESRGMQGMLREARPSVFEDI 648 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 IALV+LYRPGP+D I + RK+GKE++ HPL+ +L+ET G+++YQEQVMQ+AQ L Sbjct: 649 IALVALYRPGPMDLIPSFCARKHGKEEVDYPHPLMREVLEETYGIMVYQEQVMQVAQRLG 708 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GYSL AD+LRRAMGKK EEM K + F GA+KNGI +A IF+L+ KFA YGFNK Sbjct: 709 GYSLGGADLLRRAMGKKKAEEMAKHRVIFAEGAAKNGIGAGLANEIFDLMEKFAGYGFNK 768 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SHAAAYA+++Y TAW K HY EF AA+M++ +D+ +K+K F DA + P VN Sbjct: 769 SHAAAYALLAYHTAWAKVHYLAEFTAANMSVALDDTDKLKIFHDDAVSLGVVFEAPDVNA 828 Query: 824 ------PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876 P R+ Y L AIKG G I++A + P+ SL DF +RVD + Sbjct: 829 GGYRFEPVAPQGKERGRVRYGLGAIKGTGQGAIEAIVDARREGGPYKSLFDFAARVDRSR 888 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS- 935 +N+RV+E+L+ GA D R L+ S+ +YA N F + Sbjct: 889 VNKRVVEALIKGGAFDALEADRAVLMASVPLAFEYADTQAANADQGGLFDFGDSHAASTN 948 Query: 936 --DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 D + E +S++ R +E+ LGFY SGH D Sbjct: 949 EPDLVATEAWSIKE---RLTHEKAALGFYLSGHLFD 981 >gi|242280805|ref|YP_002992934.1| DNA polymerase III, alpha subunit [Desulfovibrio salexigens DSM 2638] gi|242123699|gb|ACS81395.1| DNA polymerase III, alpha subunit [Desulfovibrio salexigens DSM 2638] Length = 1175 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1055 (38%), Positives = 620/1055 (58%), Gaps = 49/1055 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA+ + ++ + PA+AITD ++F A+ F A GI+PI Sbjct: 4 FVHLHVHTEYSLLDGAIRIKDLCQQAKDFGMPAVAITDHGSMFGAVTFYMTAMDMGIKPI 63 Query: 71 IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IGC++ + D+ D L T + K +VLL +GY+ +I+L S +L +G Sbjct: 64 IGCEVYVAPGDIDDELAHTRKDKK---GRYHLVLLAKNQQGYKNIIKLCSLGFL--EGFH 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 +L +EG+I L+ +G + RA + T++ +F Y+ +Q Sbjct: 119 YKPRVSKYLLNKYSEGVIALSACLAGEVPRALMNEGLDAGIEMAKTYESIFPGNFYLEVQ 178 Query: 188 RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + ++ ++++ + A LPLVATN+ +L++EDYEAHD+L+ + T V + R Sbjct: 179 ANGLKEQEDLNELIYKCAEQTGLPLVATNDCHYLTKEDYEAHDLLLCIQTQTTVDAEKRF 238 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R+ D Y K + E F+ +PEA+ NT +IA C+ +++ P + E I Sbjct: 239 RMGTDQLYFKPQEEFEEYFAHVPEAIANTQKIAEMCNLEIELGNYYFPEYELPEGMTI-- 296 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E E GL+ R+ Y +RLD+EL VI M F YFLIV DFI Sbjct: 297 --ETEFVKLCKEGLQKRIENAPYE--IDEAKYWERLDYELGVINEMGFPAYFLIVQDFIN 352 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N IPVGPGRGS AGS+ A+AL IT++DP+ + LLFERFLN +R+SMPD D+DFC+ Sbjct: 353 WAKDNRIPVGPGRGSAAGSIVAWALRITNLDPIPYDLLFERFLNVERVSMPDIDVDFCER 412 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA- 484 RR EV++Y KYG + VAQI T+G+++ KA ++DVGRA+ M +S+ D + KL+P+DPA Sbjct: 413 RRLEVVKYCSEKYGWDHVAQITTYGTMKTKAVIKDVGRAMGMHFSETDPIAKLVPDDPAV 472 Query: 485 -------------HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 P +++AI + S DP + +L++I+ +LEG+ RHASTHAAG Sbjct: 473 IAQGLGVKKAKITVPNAVEAIPELSNMVA---TDPKIAKLMDIATRLEGMSRHASTHAAG 529 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI D+P++ +P+Y+ + ++ VTQ++MK +EK GLIKFDFLGL+T+T+++ LD + Sbjct: 530 VVISDKPMTDYLPLYKGKKGEI-VTQYDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIRL 588 Query: 592 RGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 +G + DL + DD +T+ + T G+FQ+ESSGMR+ L ++P C EDIIA+++LY Sbjct: 589 QGKEAPDLDTLTLDDQDTFDIFCKGDTDGVFQVESSGMRKYLRMLRPSCFEDIIAMLALY 648 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+ + +V + RK+G+ ++ + P ++P LK T GVI+YQEQVM A ++ YSL Sbjct: 649 RPGPLGSGMVDEFIKRKHGEIEVTYLWPTLEPSLKPTYGVIVYQEQVMGAAMTIANYSLG 708 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E D+LRRAMGKKI EEM K + RF+ GA +N I + A +IF+L+ +FA YGFNKSH+AA Sbjct: 709 EGDLLRRAMGKKIPEEMAKHRVRFVDGAKENNIPEQTANDIFDLMEQFAAYGFNKSHSAA 768 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+ISY TA++K H+PVEF+AA M+ EM+N EKI + R ++ + P +N F Sbjct: 769 YALISYYTAYLKAHFPVEFMAALMSTEMNNTEKIIMYINACRDMDVTVRQPDINLGVARF 828 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I Y +A IK VG I+E + PF DF +RV+ +++ +RV+E L+ Sbjct: 829 SVYEGDIIYGMAGIKNVGEEAIDEIVEERQKNGPFKDFIDFITRVNLRRVTKRVIEYLIR 888 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK----ITLEKF 943 AGA D G +R L+ SLD Y Q K + + N+ G + ++ E+F Sbjct: 889 AGAFDSMGLTRSGLIASLDKAVSYGQKKNKEKESGMINMLDMLGGGGEAEEPAVVSFEEF 948 Query: 944 SV----ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 ++ + R E E LGFY + HPL Y+ + ++G++ E I+L A Sbjct: 949 NMPEMDDKEMQRLEKE--ALGFYLTCHPLLSYRNEMSRLGLQTIENCPNLAHEATIKLGA 1006 Query: 1000 MVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 ++ ++ T+K G ++ + T + E FP Sbjct: 1007 IITGYKEIITKKSGKKMAFATIEDMTGSGELIIFP 1041 >gi|262197244|ref|YP_003268453.1| DNA polymerase III subunit alpha [Haliangium ochraceum DSM 14365] gi|262080591|gb|ACY16560.1| DNA polymerase III, alpha subunit [Haliangium ochraceum DSM 14365] Length = 1174 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1060 (39%), Positives = 623/1060 (58%), Gaps = 52/1060 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL +H+ YSLL+GA+ + ++ K+ ++A+TD N+F A++ A G++ Sbjct: 3 AFTHLHLHTQYSLLDGAIRVKDLFPKVLELGMDSVAVTDHGNMFGAVDLYTAAREHGVKM 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I GC+ I D TN+ +VLL GY+ L ++ M L+ + Sbjct: 63 IFGCETYIAASDRFDRTNRRSY------HMVLLAKDQVGYKNL-SFLNSMGYLEGFYYNP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L+E +EGLI ++ G + + + AE L ++ +FG Y+ + Sbjct: 116 RIDKKILRE-HSEGLIGMSACLGGEVAQTLLKQGTAEAEAVALEYQDIFGKGNFYLEMMG 174 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 ++ ++ + + + +++ +PLVATN+ ++S++D AH++L+++ S R R Sbjct: 175 NQLEEQQQLNADLKRMSRKLGIPLVATNDCHYVSQQDAHAHEILLSIQTGKTTSDDKRLR 234 Query: 248 VTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T D Y LKN +EM FSD+PEA+ENTV+IARRC+ L + LP + E + Sbjct: 235 HTVDSYFLKNAAEMEVDFSDVPEAMENTVDIARRCNVELDLGNTFLPNYKVPEGMSV--- 291 Query: 307 EENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E+ L GLE R + I + + YR+RL EL VI +M F GYFLIV DFI Sbjct: 292 -ESYLEKVVFDGLERRFRELSEIGRSFDPDQYRERLRHELGVINKMGFPGYFLIVWDFIN 350 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK++NIPVGPGRGSGAGS A+A+ ITDIDPL F LLFERFLNP+R+SMPDFD+DFC + Sbjct: 351 WAKEHNIPVGPGRGSGAGSCVAWAMRITDIDPLEFKLLFERFLNPERVSMPDFDVDFCMN 410 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA- 484 RRDEVI YV+ KYG + V QI TF L+A+ +RD+ R +++PY++ D+L KL+P DP Sbjct: 411 RRDEVIDYVKRKYGEKNVGQIATFHQLKARGVIRDIARVMELPYAEADKLAKLVP-DPVG 469 Query: 485 --HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P AI + + DP + LL+++ LEGL RH HAAG+VI + PL + Sbjct: 470 GKSPPVRDAIEQEPELKRLYNEDPKMRDLLDVAASLEGLNRHVGMHAAGVVIAEDPLWEY 529 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP +R ++ VTQF MK EKAGL+KFDFLGLKTLT++ ++ + ++ L Sbjct: 530 VPCFRGQNGEI-VTQFAMKEAEKAGLVKFDFLGLKTLTVIHTAVRLINEQREAAGEPLFD 588 Query: 603 FD-----DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 D D Y +++ T G+FQLESSG R+ L ++PD +EDI+A V+LYRPGP++ Sbjct: 589 IDKIDKGDPAVYKMISRGDTTGVFQLESSGFREILTKLKPDQLEDIVAAVALYRPGPLEG 648 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + RK+G++++ HP ++P+L++T GVI+YQEQVMQIAQ+L+GYSL AD+LRR Sbjct: 649 GMVDDFIERKHGRKRVEYPHPDLEPVLRDTYGVIVYQEQVMQIAQVLAGYSLGRADLLRR 708 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK K+ M K+K+ F++GA++ G+ +A +F+L+A FA YGFN+SH+AAY ISYQ Sbjct: 709 AMGKKNKDVMAKEKDGFVTGATERGVDSKLAEQVFDLMAFFAGYGFNRSHSAAYGWISYQ 768 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK--VGDN 833 TA++K HYP EF+A M+ + DN + I KF +AR + + P VN DF VG++ Sbjct: 769 TAYLKHHYPHEFMAGLMSCDQDNTDNIVKFIAEARAMGLVVARPDVNESAADFTVVVGED 828 Query: 834 ---RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 RI + L A+KGVG I+E + D+ F S+ +FC RVDS+K NRRV+E+LV +G Sbjct: 829 DTKRIRFGLGAVKGVGQGAVEAIIECRNQDEKFISIYEFCRRVDSQKCNRRVIEALVKSG 888 Query: 890 ALDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKIT 939 A D G R ++ +++ + +++R + ++F + G +D + Sbjct: 889 AFDGLSEDAGLHRARVFATIEAAMESGAQAQRDRRSGQTSLFGLIAAPEGDSGATADGMP 948 Query: 940 LEKFSVENSSVR----FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 VE + FE E LGFY SGHPLD Y+ L + + + R Sbjct: 949 ETYPEVEEWPAKELLAFEKES--LGFYISGHPLDRYRADLTRYANATTTDFLEGKRPAGP 1006 Query: 996 RLAAMVVSK-QQKKTRKG-SRIGWVTFSEPAKEYEANFFP 1033 VVS +++ TRKG +I + + + E FP Sbjct: 1007 AAVGGVVSAYRERPTRKGDGKIAFFQLEDATGQLEVIVFP 1046 >gi|323525323|ref|YP_004227476.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1001] gi|323382325|gb|ADX54416.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1001] Length = 1196 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1028 (39%), Positives = 618/1028 (60%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++HS +S+ +G + L++++ A D Q A+A+TD N F + F ++A G++ Sbjct: 7 PRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ L +Q + Sbjct: 67 PIAGC--------DVWITNPDDRDKPS--RLLLLVKDRRGYLNLCELLSKASLTNQYRGR 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL+ EGL+ L+G G I A + + A + L + K+F Y+ LQR Sbjct: 117 AEVEAGWLESGLGEGLLALSGAQQGDIGLALAAGNQEAARRNALHWAKVFPGGFYIELQR 176 Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 G ++Y + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ R Sbjct: 177 CGQPGGEQYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQ 235 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+ L++ P LP F + + Sbjct: 236 KRFTPEQYFRTQDEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + + GLE RL Q + + Y QRL+FE I +M F GYFLIVAD Sbjct: 294 --DDYLVHLSKEGLEKRLEQLYPDEAERAAQRETYYQRLEFECGTIIKMGFPGYFLIVAD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 412 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LLE++Q++EGL R+ HA G++I L+ Sbjct: 472 PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 532 FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSL 591 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPGP+D I Sbjct: 592 GQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 652 PSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM + +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 712 KKKPEEMAQHRELFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+M+L MD+ +K+K +D + ++PP +N F+ D + Sbjct: 772 LKAHHPAEFMAANMSLAMDDTDKVKILFEDCIVNKMAVLPPDINLSAYRFEPVAEADGKR 831 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A D PF + DFC+R+D + +NRR +E+L+ AGA Sbjct: 832 SRTIRYGLGAIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTIEALIRAGAF 891 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN-- 947 D +R QL+ S+ + A+ N A + G F D + V+ Sbjct: 892 DSLHQNRAQLIASVSLAMEAAEQASAN---------ALQAGLFDMGDAPSQGHELVDEPE 942 Query: 948 --SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + + E+ LGFY SGH D YK +R+ + + ++ G + +A ++ S Sbjct: 943 WPEKKKLQEEKAALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAGIIASL 998 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 999 RTQMTQRG 1006 >gi|302337842|ref|YP_003803048.1| DNA polymerase III subunit alpha [Spirochaeta smaragdinae DSM 11293] gi|301635027|gb|ADK80454.1| DNA polymerase III, alpha subunit [Spirochaeta smaragdinae DSM 11293] Length = 1141 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1038 (39%), Positives = 614/1038 (59%), Gaps = 38/1038 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL H+ YSLL+GA ++ +++K + +AITD N+F L F + A I Sbjct: 2 PDFVHLHNHTDYSLLDGAAPIDKMVEKAVSFGMKHLAITDHGNMFGVLRFYKACKAHEIN 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P+IGC++ + + G +VLL +EGY+ LI+L SR Y + Sbjct: 62 PLIGCEVYV--APGSRHVKNGSEKGNRYQHLVLLARNSEGYKNLIQLCSRGYT-EGFYYK 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L++ GL L+ +G I ++ AE++ +++LFG + ++ +Q Sbjct: 119 PRIDDELLEQYNG-GLTALSACLAGAIPSMIMNGKAEEAEQKANYYRELFGKEHFFLEMQ 177 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H + ++V+++ +PLVATN+ +L D A D+L+ + + ++DR Sbjct: 178 DHGIPEQKTVNKELVRISKKTGIPLVATNDIHYLDRADASAQDILLCIGTNRKRREQDRM 237 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D Y+K++ EM F ++PEAL NT+ +A +C+ + + PILP + +I Sbjct: 238 RFHSDQFYMKSQEEMAETFREIPEALSNTLRVAEQCNLEIDLPGPILPEY------EIPP 291 Query: 306 EEEN---ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E EN LR+ GL+ R + QR + EL +I M F GYFLIV D Sbjct: 292 EFENLGDYLRHLTFEGLKKRYPS-------LTDEIVQRAEKELGIINSMHFPGYFLIVWD 344 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI +AK+++IPVGPGRGSGAGS+ AYALTITDIDPL++ LLFERFLNP+R+SMPDFD+DF Sbjct: 345 FIHYAKQHDIPVGPGRGSGAGSIVAYALTITDIDPLKYQLLFERFLNPERVSMPDFDVDF 404 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV KYG ++V QIITFG+L+AKA ++DV R L +P+++ D++ KLIPND Sbjct: 405 CFERRQEVIDYVNRKYGKDKVGQIITFGTLKAKAVVKDVARVLDIPFAEADKISKLIPND 464 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ + + +E L++ +++LEGL RHASTHAAG+VIG + L++ Sbjct: 465 LKITID-KALEQEPQLKELMDQGGVYGELIDAARRLEGLSRHASTHAAGVVIGRKALTEY 523 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD ++ TQF M +E+ GL+K DFLGLKTLTL++ + D + +R D+ +P Sbjct: 524 VPLYRDSKTGSISTQFTMDQLEECGLVKMDFLGLKTLTLIKHTEDLIHRRDKDFDIERVP 583 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD T+ LL + +FQ ESSGM+ L+ P IED+IAL +LYRPGP+ I Y Sbjct: 584 EDDPATFTLLGEGKSTCVFQFESSGMQNILKQAHPTSIEDLIALNALYRPGPMQYIPQYI 643 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K+G+++I P ++ +LK T GVI+YQEQVMQ+AQ++ G+SL +AD+LRRAMGKK Sbjct: 644 ASKSGEQEIRYPDPSLEEVLKPTYGVIVYQEQVMQVAQIIGGFSLGKADILRRAMGKKKV 703 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +EM K K FI GA K G +K A IFE+L FA YGFNKSHAAAY+V++Y+TA++K + Sbjct: 704 KEMAKMKLEFIEGAVKKGHTKEHADEIFEMLVPFAGYGFNKSHAAAYSVVAYKTAYLKAN 763 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP EF+AA++T E++N +K+ + +A+ I ++PP VN +F V D +I Y L I Sbjct: 764 YPAEFMAANLTNEINNPDKLAFYIGEAKTMGIDLLPPEVNISEKNFSVSDGKIVYGLIGI 823 Query: 843 KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K VGT I+ A + PF+ + D RVD K +NR+VLE+L+ GALD FG +R L Sbjct: 824 KNVGTNAVEEIVRAREEGGPFEDIFDLLDRVDMKTVNRKVLETLIECGALDSFGINRSTL 883 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKIT----LEKFSVENSSVRFEN 954 L++L+ + + ++ ++F E+ + +T L K V Sbjct: 884 LENLERVMEVVSKKKEGEQFGQSSLFDDGNEEEMPWKTDLTPAEPLPKMEV------LRR 937 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ +LGFYFSGHP+D +K + I L AMV S + T+KG Sbjct: 938 ERELLGFYFSGHPMDDFKDRWKSAVNIDLSRPDRFIPERTYTLIAMVTSLRTIITKKGRP 997 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + ++ + + E+ F Sbjct: 998 MAFLQLEDYNGKIESVVF 1015 >gi|226310964|ref|YP_002770858.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599] gi|226093912|dbj|BAH42354.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599] Length = 1142 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1037 (37%), Positives = 620/1037 (59%), Gaps = 40/1037 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA ++ ++ + + A+A+TD NL+ A+ F + AGI+P Sbjct: 3 SFVHLHVHTEYSLLDGAARIDTLVKRASELGMHALAMTDHANLYGAIPFYKACLEAGIRP 62 Query: 70 IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-----YL 121 IIG +L + ++QD ++ P P+ +++L GY+ L+ L + Y+ Sbjct: 63 IIGMELYVIEGNLQDRVR-----NAPPPS--HLIVLAENETGYRNLLRLATIANTDGNYI 115 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 L + + V T+GLI L+G G + + + A++ L ++++FG++ Sbjct: 116 LPRLNKEVLAK-------HTDGLIALSGCQQGEVAKLLLAGEADTAKEAALRYQRMFGEQ 168 Query: 182 -LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ L H +R +++V+L+ +PL+ATNN ++ ED++ HD+L+A+ Sbjct: 169 HFYLELADHGLEVERRLNTRLVKLSQETGIPLIATNNVHYIHREDHQQHDILLAIKEGKT 228 Query: 240 VSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + +++R R D +YLK+ EM ++F+ P+AL NTV +A RC L A ILP F Sbjct: 229 IGEENRFRYETDQYYLKSAEEMAALFAFAPQALANTVAVADRCKLDLTFGAHILPEFPLA 288 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E D LR G R G + + RLD EL +I F+ YFL Sbjct: 289 EGQD----STQYLRELCEKGCLERY-------GEITPEAQARLDHELAIITGTGFTDYFL 337 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DF+++A +N IP GPGRGS AGS+ AY L IT++DPLRF LLFERFLNP+R++MPD Sbjct: 338 IVWDFMRYAHENGIPTGPGRGSAAGSLVAYVLKITNVDPLRFQLLFERFLNPERVTMPDI 397 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF +RRDEVI YV +KYGH+RVAQIITFG++ A+AA+RDVGRAL + VDR+ K+ Sbjct: 398 DIDFSVERRDEVIHYVASKYGHDRVAQIITFGTMAARAAVRDVGRALGLSLGIVDRVAKM 457 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP P + +A+ + + + +L+E ++ +EGL RHASTHAAG+VI P Sbjct: 458 IPQSPGMTIE-RAMQINPDIGKLCAENKQAAQLIETARGVEGLPRHASTHAAGVVISREP 516 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 L+ VP+ + L +TQ+ M+ +E+ GL+K DFLGL+ LT++Q++L L ++G+ +DL Sbjct: 517 LTNYVPL-QTGNEGLALTQYPMEILEEVGLLKMDFLGLRNLTIIQETLRHLQEQGISLDL 575 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD +T+ +L+ T GIFQLESSGMR L ++P ++DIIA+++LYRPGP++ I Sbjct: 576 DKLPTDDEKTFRMLSRGETTGIFQLESSGMRNVLRDLKPSSLDDIIAVLALYRPGPMEII 635 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y K+G K+ HP+++P+L+ET G +IYQEQ+MQI+ L+G+SL EAD+LRRA+G Sbjct: 636 PQYIAAKHGTSKVQYAHPVLEPILRETHGFMIYQEQIMQISSTLAGFSLGEADILRRAVG 695 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK +E + +Q+E+F++G + G + +++L+ +FADYGFNK+H+ AYA+I+YQ A+ Sbjct: 696 KKKRELLAEQREKFVAGCVRQGYGDELGNQVYDLIVRFADYGFNKAHSVAYAIIAYQMAY 755 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K YP+ F+AA ++L + + +I ++ ++AR+ + ++ P VN F V + I + Sbjct: 756 LKATYPLAFMAALLSLSIGSQTRIAEYTEEARRLQLTVLGPDVNKSLAFFTVEQDAIRFG 815 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 LAA+K VG I++ +P+ + DFC+RVD++ +NRRV+ESL GALD R Sbjct: 816 LAAVKNVGYGAIESIVKERKGRPYRDVFDFCARVDARLVNRRVVESLTLCGALDSLPGHR 875 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQ 956 QLL LD A R N+FA E+ + E V + + + + E+ Sbjct: 876 NQLLLLLDEAVGKANNKRIERDANQLNLFAGEEDAAPLREPAEYPEVPPLSHTQQLKEER 935 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 ++G Y SGHPLD + + + + R +++ M+ ++ +T+KG + Sbjct: 936 DLIGVYISGHPLDQFAHVASRPEVTVISSLGDVPRDKTVKVFGMITEARRIQTKKGDPMA 995 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++T + E FP Sbjct: 996 FITLEDKTAPVELVVFP 1012 >gi|71906199|ref|YP_283786.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB] gi|71845820|gb|AAZ45316.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB] Length = 1156 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1043 (39%), Positives = 615/1043 (58%), Gaps = 71/1043 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP +VHL++HS YS+ +G + + + + + A D PA+A+TD NLF ++F A G+ Sbjct: 3 SPRYVHLRLHSEYSVTDGIVRVGDAVKRAAGDSMPAMAMTDLGNLFGLVKFYTGARGKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS----IVLLVSTAEGYQRLIELVSRMYLLD 123 +PI G ++ +TN P P ++LLV GYQ+L EL+++ YL++ Sbjct: 63 KPIAGA--------DVWITN------PDAPEDAYRLLLLVRNRVGYQQLCELLTKAYLVE 108 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + I W E+G++GLI L+G G I A + +A +R ++ +F Y Sbjct: 109 GRRDRAEIRREWFAELGSDGLIALSGAHLGDIGEALLNGNFDLAGERAKAWEAIFPGAFY 168 Query: 184 VNLQRHRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 + +QR Y + ++ +VQ LA LPLVAT+ F++ +D+ AH+ + +A V Sbjct: 169 LEVQR---YGQPQQEAIVQQTADLAGELGLPLVATHPIQFMNRDDFRAHEARVCIAEGYV 225 Query: 240 VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IE 297 + RP++ T + Y K ++EMV +F+DLPEALENT+EIA+RC+ + + LP F I Sbjct: 226 LGDTRRPKLYTEEQYFKTQAEMVELFADLPEALENTLEIAKRCNLTMTLGKNFLPDFPIP 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFS 354 D + L +A GLEVRLA+ + +Y +RL FE I +M F Sbjct: 286 PGMTDGEY-----LVQEAKKGLEVRLAELYPDPEVRQQRRPEYDERLVFECKTILQMGFP 340 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIVADFI W KKN +PVGPGRGSGAGS+ AY+L ITDIDPL ++LLFERFLNP+R+S Sbjct: 341 GYFLIVADFINWGKKNGVPVGPGRGSGAGSLVAYSLRITDIDPLEYALLFERFLNPERVS 400 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFCQD R VI YV+ YG + V+QI TFG++ +KA +RDVGR +PYS DR Sbjct: 401 MPDFDIDFCQDNRWRVIEYVREHYGADAVSQIATFGTMSSKAVIRDVGRVFGLPYSMCDR 460 Query: 475 LCKLIPNDPAHPVSL-QAIADDSRFREARLAD---PSVDRLLEISQKLEGLYRHASTHAA 530 + KLIP PVSL +A+ + + ++ D ++ L +++ +LE L R+ HA Sbjct: 461 ISKLIPIVQNKPVSLAEALEQEPQLKQMMEGDGDGETIRELFDLAGRLEDLTRNVGMHAG 520 Query: 531 GIVIGDRPLSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 G++I ++ P+Y+ +D PV+QF+ +EKAGL+KFDFLGL+ LT+++ +++++ Sbjct: 521 GVLIAPGKITDFCPIYQATGADASPVSQFDKDDVEKAGLVKFDFLGLRNLTIIELAVEYI 580 Query: 590 AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + G K+DL + F D Y +L T IFQ+ES GM++ L+ + PD EDIIA+++ Sbjct: 581 RRMTGEKLDLMSLGFKDPAAYQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLA 640 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+ + +V + RK G++KI HP + L T GVI+YQEQVMQI+Q++ GY+ Sbjct: 641 LYRPGPLGSGMVDDFILRKKGQQKIDYFHPDLTACLSPTYGVIVYQEQVMQISQIIGGYT 700 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM K +E GA + G +A +F+L+ KFA+YGFNKSH Sbjct: 701 LGGADMLRRAMGKKKPEEMAKHRETIAQGAKEKGYDPALAEQLFDLMTKFAEYGFNKSHT 760 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYAV++Y TAW+K H+ F+AA+M+ ++DN + +K F +D I+++ P VN Sbjct: 761 AAYAVVTYHTAWLKAHHCAAFMAATMSSDLDNTDSVKIFYEDTIANKIKVLGPDVNVSNY 820 Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884 F+ V I Y L A+KG G I++A A+ PF L DFC R D + +NRR E+ Sbjct: 821 RFEPVDRGTIRYGLGAVKGTGEQAVNVILKARAEGGPFKDLFDFCMRCDKRMVNRRTTEA 880 Query: 885 LVFAGALDCF--------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 L+ AGA D G R +LL ++ +A+ E+N ++F + +D Sbjct: 881 LIKAGAFDTIAPEIAPGKGADRCKLLATVGVAMDFAEQAERNAM--QTSLF--DMADVAD 936 Query: 937 KITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKP-----ILRKMGIKGYEESVAT 989 + E +V + + E+ LGF+FSGHP + K I R + + + T Sbjct: 937 EHAPEYVNVRPWDEKTKLMEEKTALGFFFSGHPYNTCKKELSRFIRRPLNRLEPAKEMTT 996 Query: 990 IRGNNIRLAAMVVSKQQKKTRKG 1012 I A +VV + + TR+G Sbjct: 997 I-------AGLVVGVRTQMTRRG 1012 >gi|295698553|ref|YP_003603208.1| DNA polymerase III alpha subunit [Candidatus Riesia pediculicola USDA] gi|291157151|gb|ADD79596.1| DNA polymerase III alpha subunit [Candidatus Riesia pediculicola USDA] Length = 1177 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1062 (39%), Positives = 630/1062 (59%), Gaps = 50/1062 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F+HL V S YS+ +G ++ ++D+ + P+IAITD NL ++F + + + Sbjct: 1 MNKEPKFIHLHVRSDYSMSDGLSRIDILIDRALELKMPSIAITDFVNLHGMIKFYELSRS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG D+ +QD K F T + +L+ +GYQ L++L+S Y Sbjct: 61 VGIKPIIGS--DVIVQD------LSKNGFETYYELTILIKDHKGYQNLVQLISLAYRDGN 112 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL + EGLI+L+GG SG I + N+ +K L + F + Y+ Sbjct: 113 STMGPIIKKDWLI-LYREGLILLSGGISGDIGKNILENNLSDLKKNLNFYGTYFHNHYYM 171 Query: 185 NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242 + R + + +V+QL+ ++P+VATNN F+ + D+ AH + +A+ + V+S+ Sbjct: 172 EITRTGKIEEEKYIHKVIQLSKKKKIPIVATNNVRFVFKNDFFAHKIRVAIQNGFVLSKS 231 Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 KD R + YL++ EM +F D+PE+L+NTVEIA+RC+ +LP F K Sbjct: 232 RKDDLRYSDQQYLRSSKEMNDLFRDIPESLKNTVEIAKRCNLQFSFSNFLLPVFPIKNV- 290 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ A +GLE RL + + Y QRL E+N+I +M FSGYFL Sbjct: 291 ----RIEDFFVFSARSGLEERLKKIYPDPSIRKRKRDKYDQRLSEEINIIHQMGFSGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +F+ W+K+ NIPVGPGRGSGAGS+ AY+L IT++DP++F+L+FERFLN +R+SMPDF Sbjct: 347 IVMEFVNWSKRKNIPVGPGRGSGAGSLVAYSLKITELDPIKFNLVFERFLNKERISMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC ++RD VI +V KYG + V+QII FG++ A++ ++DVGRA+ PYS +R+ KL Sbjct: 407 DIDFCVEKRDLVIEHVIKKYGKDFVSQIIAFGTMTARSVVKDVGRAMCYPYSFTNRISKL 466 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP + A++ + + ++ + V LL+ ++KLEG+ R+ S HA GIVI + Sbjct: 467 IPFDPGMTIE-HALSSEKKLKKLYENEEEVKILLDTAKKLEGIVRNVSKHAGGIVISPKK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQR 592 + + P+Y D +T + IEK GL+KFDFLGLKTLT+++ +++ + ++ Sbjct: 526 IIKYFPLYYDSIGKNSLTHLDKDDIEKIGLVKFDFLGLKTLTIIRDTIEIINFHSSDLKK 585 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 DL+ I +D ++ LL + T+ IFQLES GM+ + +QPDC EDII+L++L+RP Sbjct: 586 ITLSDLNSISLNDPMSFDLLRSAETVAIFQLESRGMKDLIRRLQPDCFEDIISLIALFRP 645 Query: 653 GPIDNIVVYN--NRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + ++ N NRKNG EKI H L+ P+LK T G+I+YQEQVMQIAQ+L+GY Sbjct: 646 GPLKSGMISNFINRKNGLEKISYPEEECQHDLLKPILKNTYGIILYQEQVMQIAQILAGY 705 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL EAD+LRRAM KK K+EM Q++ F K GI + +A +F+L+ KF+ YGFNKSH Sbjct: 706 SLGEADILRRAMSKKNKKEMKDQRKNFERRCLKRGIDREMASRMFDLMEKFSGYGFNKSH 765 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA+ISYQT W+K+HYP EF+AASMT EM+N++KI + + R+ I+I+PP+VN Sbjct: 766 SAAYALISYQTLWLKSHYPSEFIAASMTSEMNNLDKIFELVNECRRLKIKILPPNVNQGM 825 Query: 826 VDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCSRVDSKKLNRRVL 882 F+V N I Y + AIKG+G + M +S +K F + DFC R++ K +NR+ L Sbjct: 826 YFFQVNRNGEIIYGMGAIKGIGKSVIEK-MISSRNKYGKFLDIFDFCRRINVKTVNRKTL 884 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E L+ +G+ DCFG R ++L L + K +K +++ ++F + ++ Sbjct: 885 EKLILSGSFDCFGQKRFEMLHILKDALKLTAQEKKVQSSGQIDMFETDIRKNRSIREIDD 944 Query: 943 FSVEN-SSVRFENEQRVLGFYFSGHPLDVYKPIL----RKMGIKGY------EESVATIR 991 S + + F E+ LGFY + HP Y+ + R I+ +ES T+ Sbjct: 945 LSRKRLKRMVFYGERDTLGFYLTNHPTSFYRSEISYYTRGKNIRDILSHSFSQESSLTVV 1004 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G +I +V K R IG T S+ + E FP Sbjct: 1005 G-SISSCRLVKCKTSNFFRNSKTIGICTLSDFSGNLEIVLFP 1045 >gi|88812392|ref|ZP_01127642.1| DNA polymerase III, alpha subunit [Nitrococcus mobilis Nb-231] gi|88790399|gb|EAR21516.1| DNA polymerase III, alpha subunit [Nitrococcus mobilis Nb-231] Length = 1174 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1067 (38%), Positives = 613/1067 (57%), Gaps = 62/1067 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F HL +HS +SL +G + + ++ +A PA+A+TD NLF A++F + A AG+ Sbjct: 2 SAFFAHLHLHSEFSLQDGLIRVKPLMQAVAQAGMPAVALTDQGNLFGAVKFYRAAVNAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG ++ + D + + +VLL + +GY+ L L++R YL Q + Sbjct: 62 KPIIGAEIRVADADASERPAR----------LVLLCADTQGYRTLTRLLTRGYLEGQQQG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+GG G + RA +A ++L +++ FGDR Y+ LQ Sbjct: 112 VPVVDREWLRGR-CAGLIGLSGGRVGDVGRALLSGEPALAARKLEFWREQFGDRYYLELQ 170 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R D V+LA H + +VATN+ FL EDY AH+V + + ++ K RP Sbjct: 171 RTGRPGDEEHVQAAVELATAHGVAVVATNDVCFLRPEDYAAHEVRVCIQDGRTLADKHRP 230 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + YL++ EM +F+D+PEALENT EIARRC+ L + LP F E I Sbjct: 231 RHYSEQQYLRSPKEMAELFADVPEALENTAEIARRCNLHLTLSHSALPVFPIPEGASI-- 288 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHA----QDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ LR +A GL+ RL + + Y +RL+ EL VI +M F YFLIVA Sbjct: 289 --DDVLRQEAERGLQERLQCSLVTDHPDGVELRRSYSERLERELEVINQMGFPSYFLIVA 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK+ IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID Sbjct: 347 DFIRWAKRQGIPVGPGRGSGAGSLVAYALQITDLDPLSYDLLFERFLNPERVSMPDFDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RD VI YV +YG ++V+QI+T G++ A+A +RDVGR L PY VDR+ K+IP Sbjct: 407 FCMENRDRVIDYVGGRYGRDKVSQIVTHGTMAARAVVRDVGRVLGHPYGYVDRIAKMIPF 466 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + ++L+ A+A + D V LL +++KLEGL R+ HA G+VI L+ Sbjct: 467 EIG--ITLEKALAQEEELHRLYREDEEVRTLLGMARKLEGLARNVGRHAGGVVIAPSELT 524 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV----K 595 P+Y + TQ++ IE GL+KFDFLGL+TLT++ ++ + QR Sbjct: 525 DFAPLYCEPGGQGLATQYDKDDIEAVGLVKFDFLGLRTLTIIDWTVKAVNTQRSACDEPA 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ + DD +T+ LL T +FQLES GM+ + +QPD EDIIALV+L+RPGP+ Sbjct: 585 LDIAALALDDAKTFELLKRCATTAVFQLESRGMKDLMRRLQPDTFEDIIALVALFRPGPL 644 Query: 656 DNIVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + RK+G+ + H ++P+LK T G+I+YQEQVMQIAQ L+GYSL Sbjct: 645 QSGMVDDFIARKHGRAAVAYPTRALHHEALEPILKSTYGIILYQEQVMQIAQTLAGYSLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK +EM +Q+ F+ GA + G+++ A +F+L+ KFA YGFNKSH+AA Sbjct: 705 AADLLRRAMGKKKPQEMAQQRHIFLQGAIECGLARQQAEGLFDLMEKFAGYGFNKSHSAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++YQTAW+K HYP F+AA ++ +MDN +K+ + R I + PP VN F Sbjct: 765 YALLAYQTAWLKAHYPAPFMAAVLSSDMDNTDKVVALIDECRCLQIILDPPDVNRSGYAF 824 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 + + I Y L A+KG+G + ++EA A P+ L D C RVD +++N+RV+E+L+ Sbjct: 825 QAREMTHIVYGLGAVKGLGLSAIEALVEAREAGGPYADLFDLCRRVDLRRVNKRVIETLI 884 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +G+LD +R Q L + + A+ +NR ++F G + + +V Sbjct: 885 RSGSLDGLAVNRATAWQQLPDALRSAEQQCRNRDTGQVDLF----GLGATPLEQAPLTVS 940 Query: 947 NSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 + V R E+ LG Y +GHP++ Y+ L + + A G R Sbjct: 941 DPGVPEWDEQERLAAEKATLGLYLTGHPIEHYEAELDGIVSARLNQVSAGACGEPARGVG 1000 Query: 1000 MVVSKQQKK-------------TRKGSRIGWVTFSEPAKEYEANFFP 1033 ++K T+ G R+G++T + + FP Sbjct: 1001 RKREGERKVVVAGLVVALRARPTQNGGRMGFITLDDRTGRMDVIVFP 1047 >gi|260222868|emb|CBA32866.1| DNA polymerase III subunit alpha [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1244 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1012 (39%), Positives = 589/1012 (58%), Gaps = 51/1012 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G +++++ A D QPA+AITD NNLF A++F + G++P+ Sbjct: 57 FVHLRLHTEFSVVDGTTRIDDVIKMAAKDGQPALAITDLNNLFGAIKFYKGGRGKGVKPV 116 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ ++ V I+LLV +GY + EL++R + + K Sbjct: 117 IGAEIVLEGLGGDATA---------VTRIILLVQNKQGYLNISELIARAFTQNVVKNQAV 167 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 I ++WL+E+ EGLI L+G +GP+ +A + A L +F R Y+ LQR Sbjct: 168 IKMAWLKEL-NEGLIALSGAQAGPVGQALVQGDTARAHDVALQLAGVFPHRFYIELQRAG 226 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D V+LA +LP+VAT+ F ++D+EAH+ + +A ++S R R Sbjct: 227 RADDEAHVVAAVKLAARMKLPVVATHPIQFAEQDDFEAHEARICIADGEILSNPKRVRRF 286 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ ++M ++F+D+P A+ NT+EIA+RCS L + P LP F + + E Sbjct: 287 TREQYFKSAAQMEALFADIPSAIANTMEIAKRCSLTLVLGKPQLPAFPTPLVNGQRMTPE 346 Query: 309 NELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R + GL+ R+ + Y +RL+FEL I +M F GYFLIV DFI Sbjct: 347 EYFRYASFEGLKERMVHLYPNEQEREAEMPRYVERLEFELGTILKMGFPGYFLIVGDFIN 406 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 407 WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQT 466 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 R+ VI YV++KYG + V+QI TFG++ A+ +RDVGR L M Y+ D + KLIPN P Sbjct: 467 NRNLVIDYVKDKYGKDAVSQIATFGTMAARGVVRDVGRVLDMSYTFCDGISKLIPNKPGT 526 Query: 486 PVSLQAIADDSRF----------------REARLADPSVDRLLEISQKLEGLYRHASTHA 529 V+LQ D + REA+ D V LLE+++KLEG+ R+ HA Sbjct: 527 NVTLQLPPTDGKKSDKYVYATEAEPILAEREAKEED--VKTLLEMARKLEGMTRNIGMHA 584 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 G++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ Sbjct: 585 GGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAAEFI 644 Query: 590 AQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 +R K +P DD + Y L + T +FQ ES GM+ L +P +ED+IAL Sbjct: 645 RKRHPGQEKFAYENLPLDDPKVYKLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIAL 704 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 +LYRPGP+D I + RK+G+E++ HP + ML ET G+++YQEQVMQ AQ+L GYS Sbjct: 705 NALYRPGPMDLIPSFVARKHGREQVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYS 764 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSH 765 L AD+LRRAMGKK KEEMD+ + F +GA K +GI + A +F+L+ KFA YGFNKSH Sbjct: 765 LGGADLLRRAMGKKKKEEMDEHRGIFRAGAFKTHGIPEEKADEVFDLMEKFAGYGFNKSH 824 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 AAAY++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + + PP++N Sbjct: 825 AAAYSLLAYHTGWIKVHYTAEFFCANMTVEMDDTDKLKVLFEDAEKMGLSFEPPNINRGN 884 Query: 826 VDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK-------PFDSLEDFCSRVDSKKL 877 F+ + + I Y L AIKG G I+ A + PF SL DF RVD +L Sbjct: 885 YRFEPISNKEIRYGLGAIKGTGEQAILAIVAAREGRGPTEEAGPFKSLFDFARRVDRTRL 944 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933 N+R +E+L+ AGA D +R +L+ S+D + + +F + G+ Sbjct: 945 NKRCVEALIKAGAFDTLHLNRAELVASMD--RAFEFAAASAANANQVGLFDMGGDDDHGS 1002 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 + + L + R E+ +GFY SGH D +RK + EE Sbjct: 1003 STQEPDLVEVMPWGVKERLTQEKTAVGFYLSGHLFDEVATEVRKFAKRPIEE 1054 >gi|146281926|ref|YP_001172079.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri A1501] gi|145570131|gb|ABP79237.1| DNA polymerase III, alpha chain [Pseudomonas stutzeri A1501] Length = 1131 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1024 (40%), Positives = 602/1024 (58%), Gaps = 63/1024 (6%) Query: 50 NNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 +N+ S ++F + A AGI+PI C DI + G + + LL +GY Sbjct: 2 SNMCSLVKFYKTAQGAGIKPI--CGADIWLA--------GCDEDGPLSRLTLLAMNPKGY 51 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 + L EL+SR + Q V I W++E EGLI L+G G I A +A Sbjct: 52 RNLTELISRGWTEGQRNDLVIIEREWVKE-AAEGLIALSGAKEGEIGHALLNGDEALAAS 110 Query: 170 RLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 RL ++++F DR Y+ +QR +R D V LA PLVATN+ FL +ED+EAH Sbjct: 111 RLAEWREVFADRFYLEVQRTNRVNDEEHLHAAVALAERSGAPLVATNDVRFLKQEDFEAH 170 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + + + RPR D YLK EM +F+DLPEALENTVEIA+RC+ +Q+ Sbjct: 171 ETRVCIGEGRTLDDPRRPRTYSDQQYLKTPEEMAELFADLPEALENTVEIAKRCNIEVQL 230 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG---YHA--QDYRQRLD 342 LP F E I ++ LR + GLE RL + + K Y A Q Y RL+ Sbjct: 231 GTYFLPNFPVPEGMTI----DDYLRQVSFEGLEERL-EVLLPKDTPDYEAKKQVYIDRLE 285 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 FEL I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + L Sbjct: 286 FELGTIIQMGFPGYFLIVMDFIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDL 345 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPDFD+DFC D RD VI YV YG V+QIITFG++ AKA +RDV Sbjct: 346 LFERFLNPERISMPDFDVDFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVA 405 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 R Y DRL K+IP + + +A + R+ D + E++ KLEG+ Sbjct: 406 RVQGKSYGLADRLSKMIPFEVGMTLE-KAYEMEEPLRDFLAVDEDAREIWEMALKLEGIT 464 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HA G+VI L+ P+ D VTQF+ +E+AGL+KFDFLGL+TLT++ Sbjct: 465 RGTGKHAGGVVIAPTKLTDFAPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTII 524 Query: 583 QKSLDFL----AQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 + +L+ + A++G++ V++ IP DD TY LL T +FQLES GM++ ++ ++P Sbjct: 525 KWALETINREQAKKGLEPVNIDFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKP 584 Query: 638 DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVII 690 DC+ED+IALV+L+RPGP+ + +V + NRK+G+ ++ HP ++P+LK T G+I+ Sbjct: 585 DCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQYAGLEPVLKPTYGIIL 644 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVMQIAQ+++GY+L AD+LRRAMGKK EEM KQ+ FI G + NGI +A NIF Sbjct: 645 YQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIF 704 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 +L+ KFA YGFNKSH+AAY ++SYQTAW+K H+P F+AA ++ +M N +K+ ++ R Sbjct: 705 DLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHHPSPFMAAVLSADMHNTDKVVILIEECR 764 Query: 811 QFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868 ++I PP VN F V D+ RI Y L A+KGVG I E A+ PF L DF Sbjct: 765 SMKLRIDPPDVNVSEFKFTVNDDGRIVYGLGAVKGVGEGPVDAIAECRAEGGPFKDLFDF 824 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFG---------------YSRMQLLQSLDNIQKYAQ 913 C+R+D K++N+R LE+L+ +GALD G +R LL +++ + A+ Sbjct: 825 CARIDLKRINKRTLEALIRSGALDRLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAE 884 Query: 914 WVEKNRTNKHENIFAH-----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 ++ + H ++F E + + + S++ R + E+ LG Y +GHP+ Sbjct: 885 QTARSAESGHMDLFGGLFAEPEADVYGNHRNARELSLKE---RLKGEKDTLGLYLTGHPI 941 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 D Y+ +R+ + + + RG +A ++V+ + K +KG ++G++T + + E Sbjct: 942 DEYEGEIRRFARQRIID-LRPARGEQT-IAGLIVNLRVMKNKKGDKMGFITLDDRSGRIE 999 Query: 1029 ANFF 1032 A+ F Sbjct: 1000 ASLF 1003 >gi|303328214|ref|ZP_07358652.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. 3_1_syn3] gi|302861544|gb|EFL84480.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. 3_1_syn3] Length = 1159 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1040 (39%), Positives = 610/1040 (58%), Gaps = 32/1040 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+GA+ + ++ + PA AITD N+F A F GI+PI Sbjct: 4 FVHLHCHTEYSLLDGAIRIKDLCARAKDYGMPACAITDHGNMFGAAYFYAACKDFGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 GC++ + K + + ++LL GY L++LVS +L D R Sbjct: 64 FGCEVYVCHDHTDKTSELARRRH----HLILLAQNELGYHNLVKLVSHGFL-DGFYYKPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L+ EGL L+ +G I RA A + ++ R Y+ LQ + Sbjct: 119 VDKELLRRYA-EGLTCLSACIAGEIPRAILAKDMDKALSLTREYADIYPGRFYLELQSNG 177 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 + ++++A T +LPLVATN+ +L+ +D +AH+VL+ + T + R R Sbjct: 178 LAEQEVVNNALLEIAETADLPLVATNDCHYLNADDADAHEVLLCIQTQTTMDDPKRMRFE 237 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ EM F+ +PEAL NT+ IA C+ L P + E + E Sbjct: 238 THELYYKSIEEMEKPFAHVPEALANTMRIAETCNVELDFGHHYFPVYQLPEGASM----E 293 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 +E R A GLE RL + + YR+RL +EL VI M F GYFLIV +FI WAK Sbjct: 294 SEFRRLAEEGLERRLEKHPDRENIDPARYRERLQYELGVILEMGFPGYFLIVQEFINWAK 353 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + IPVGPGRGS AGS+ A++L IT++DPL ++LLFERFLN +R+S+PD D+DFC+ RR Sbjct: 354 NHGIPVGPGRGSAAGSLVAWSLRITNLDPLPYNLLFERFLNNERVSLPDIDVDFCERRRG 413 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +VIR++ + YG VAQI TFG+++AK +RDVGRAL M +++ DR+ KL+P+D + Sbjct: 414 DVIRHMVDTYGEGSVAQITTFGTMKAKGVVRDVGRALGMTFAETDRIAKLVPDDLKMTIK 473 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R+ D V LL+ +++LEGL RHASTHAAG+V+ D+P+ + +P+Y Sbjct: 474 -KALDLEPDLRKLYEEDQQVRHLLDTARRLEGLARHASTHAAGLVVSDKPMEEYLPLYLG 532 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607 R +L VTQF+ EKAGL+KFDFLGLKT+TL+Q +LD ++ +G DL +P D E Sbjct: 533 KRGEL-VTQFDGPMTEKAGLVKFDFLGLKTMTLIQDTLDNISLQGQTPPDLDNLPLTDAE 591 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665 TY L T G+FQ+ESSGMRQ L ++P C ED+IA+++LYRPGP+ + +V + RK Sbjct: 592 TYELYARGDTDGVFQVESSGMRQYLRMLRPTCFEDVIAMLALYRPGPLGSGMVDEFIKRK 651 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+ +V H + L++T GVI+YQEQVMQIAQ+++ Y+L AD+LRRAMGKK E M Sbjct: 652 HGQVPVVYPHDSLTECLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKAEAM 711 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 K++ F++GA KNGI+K A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY V Sbjct: 712 AKERVTFVAGAEKNGIAKEKANEIFDLMEKFAEYGFNKSHSAAYALISYFTAYLKVHYKV 771 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+AA +T EM N +K+ K+ + I ++ PSVN +F ++ + L IK V Sbjct: 772 EFMAALLTSEMGNQDKLLKYVSCCKDMGIDVVQPSVNQSQREFTAHGGQVVFGLGGIKNV 831 Query: 846 GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G R I+E + + SL D C RV+ +K+ +RVLESL+ GA DCF SR +L + Sbjct: 832 GDEAIREIVEGRKEGGDYISLLDLCCRVNLRKVTKRVLESLIKGGACDCFNVSRAGMLAA 891 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEK----------GTFSDKITLEKFSVENSSVRFEN 954 L+ + AQ K++++ ++ A G + TL + ++ Sbjct: 892 LEIVVARAQKKAKDKSSNQVSLLAMAPVVEAAPQPGVGLDCPEATLPEM---EDDLKLRA 948 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGS 1013 E+ LGF+ + HPL Y +R++ + E++ G I A +V S ++ T+ KG Sbjct: 949 EKEALGFFLTSHPLQPYSREIRRLRLTTLEDARELFPGAEINCAVLVTSIKEVLTKSKGE 1008 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 R+ +V + E FFP Sbjct: 1009 RMAFVGVEDLTGHAEVTFFP 1028 >gi|317407652|gb|EFV87591.1| DNA polymerase III [Achromobacter xylosoxidans C54] Length = 1163 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1004 (40%), Positives = 605/1004 (60%), Gaps = 61/1004 (6%) Query: 8 SPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +PS FVHL+VHS +S+++G + + +++ ++A QPA+A+TD +NLF ++F + A AG Sbjct: 7 TPSPFVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGARGAG 66 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125 I+PI GC + + D+ P P ++LLV +GY L EL+SR +L +QG Sbjct: 67 IKPIAGCDVWLSNDDD-----------PAKPFRVLLLVRNHQGYLNLCELLSRAFLTNQG 115 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 K I WLQ G +GLI+L+GG G + +A ++ A + +F Y+ Sbjct: 116 KGRAEIRREWLQ--GQDGLIVLSGGRGGDVGQALDAGNAVSALALARQWAHMFPGSYYIE 173 Query: 186 LQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR G + Y ++ ++LA LP+VAT+ FL E +++AH+ + +A +++ Sbjct: 174 LQRAGMDGDEAYTQA-AMRLAAEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEILANP 232 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE--- 299 R R + + YL + EM F+D+P AL NTVEIA+RC+ L + P LP F + Sbjct: 233 RRVRRFSKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPDGVS 292 Query: 300 CDD--IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 DD +Q EE GLE R+A + + Y +RL +E I +M F Sbjct: 293 LDDYLVQLSEE---------GLEKRMAFLFPDEAERASKREQYYERLRWECKTIIQMGFP 343 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+S Sbjct: 344 GYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVS 403 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFCQD R+ VI YV+ KYG V+QI TFG+L AKA +RD GR L MPY D Sbjct: 404 MPDFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDG 463 Query: 475 LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 L KLIP +P P +L+ + D+ F++ + V L+++++ LEGL R+ HA G++ Sbjct: 464 LSKLIPFNPMDPWTLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVL 523 Query: 534 IGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 I L+ P+Y + + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ ++ Q Sbjct: 524 IAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQF 583 Query: 593 GV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 D+ + DD Y +L T +FQLES GM++ L+ ++P+ EDIIA+++L Sbjct: 584 NEDKRDFDVMALSLDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLAL 643 Query: 650 YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 YRPGP+++ +V + NRK+G+ + H ++ LK T GVI+YQEQVM I+Q++ GYSL Sbjct: 644 YRPGPLESGMVDDFVNRKHGRAAVDYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSL 703 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM K +E F GA + G +AV +F+L+ KFA YGFNKSH+A Sbjct: 704 GGADLLRRAMGKKKPEEMAKHRELFEKGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSA 763 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA+ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+ ++++PP VN Sbjct: 764 AYALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYR 823 Query: 828 FK-VGDNR---------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876 F+ V D + Y L A+KG G I+ A + PF +L DFC RV Sbjct: 824 FEPVADKHTEKGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFQNLFDFCRRVSKHA 883 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 +NRR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + SD Sbjct: 884 VNRRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAE--QAARSANQSSLFGDDS---SD 938 Query: 937 KIT--LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + L K + + + E+ LG+Y+SGH D ++ +R++ Sbjct: 939 VVAGELAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRQI 982 >gi|94309699|ref|YP_582909.1| DNA polymerase III subunit alpha [Cupriavidus metallidurans CH34] gi|93353551|gb|ABF07640.1| DNA polymerase III alpha subunit [Cupriavidus metallidurans CH34] Length = 1176 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1038 (40%), Positives = 621/1038 (59%), Gaps = 48/1038 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL++HS YS+++G + L++ + A D A+A+TD N F + F ++A G+ Sbjct: 12 APRFVHLRLHSEYSIVDGIVRLDDAVKAAARDGMGALALTDLANAFGLIRFYKEARGGGV 71 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P++G ++ +TN P ++LLV GY L L+SR +L +Q + Sbjct: 72 KPVVGA--------DVWLTNAEDRDKPA--RMLLLVQDRIGYLNLCTLLSRAWLGNQHRG 121 Query: 128 SVRICLSWLQEIGTEGL------IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 WL E G EGL I L+G G + +A + + A + + ++F R Sbjct: 122 RAEFEPGWLGEPGEEGLPLATGLIALSGAMGGDVGQALANGNVEAARRAAEHWARVFPQR 181 Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR G D Y Q VQLA + +LP+VAT+ F++ +D+ AH+ + +A + Sbjct: 182 YYIELQRAGQPGTDAY-VPQAVQLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGEL 240 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D Y K + EM ++F+D+P AL+N+VEIA+RC+ L++ P LP F Sbjct: 241 LANPRRTRKFTTDQYFKTQDEMTALFADIPSALQNSVEIAKRCNLTLELGKPRLPLFPTP 300 Query: 299 ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L A GLE R L + +Y RL+FE I +M F G Sbjct: 301 DGMSL----DDYLVFMAKEGLEKRMLVLFPDEAERESKRAEYYARLEFETGTIIKMGFPG 356 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 357 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSM 416 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y VD + Sbjct: 417 PDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGV 476 Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+L+ A ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 477 AKLIPFKPGKLVTLEEAKKEEPALAERERTEEEVRQLLELAQRVEGMTRNVGMHAGGVLI 536 Query: 535 GDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFL 589 L+ P+Y + V+Q++ +E AGL+KFDFLGL TLT+L ++ + L Sbjct: 537 APGRLTDFCPLYTQGTDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRL 596 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 + S IP DD + +L + T+ +FQLES GM+ L+ +PD EDIIALV+L Sbjct: 597 DPSKADWNCSQIPLDDSPAFDILKSANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 656 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL Sbjct: 657 YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGG 716 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM K ++ F GA KNG++ A +IF+L+ KFA YGFNKSHAAAY Sbjct: 717 ADLLRRAMGKKKPEEMAKHRDMFREGADKNGLTAQQADDIFDLMEKFAGYGFNKSHAAAY 776 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K +D R I+++PP VN F Sbjct: 777 ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCRLNKIEVLPPDVNASEYRFA 836 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D + I Y L IKG G I+ A ++PFD L DFC RVD +++NRR +E+L+ A Sbjct: 837 PTDAKTIRYGLGGIKGSGQGAIEDILRAREERPFDDLFDFCERVDRRQVNRRTIEALIRA 896 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVEN 947 GA D +R QLL S+ + A +K + ++F + S + L Sbjct: 897 GAFDSLNDNRAQLLASVSIAMEAAD--QKAESANQVSLFDLMDDAGASHRPELVDEPRWT 954 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-IRGN------NIR---L 997 + E++ LG+YFSGH D + +R+ +KG ++ ++GN ++R + Sbjct: 955 PKRTLQEEKQALGYYFSGHLFDASRDEVRRF-VKGTLAALEKEVQGNGGGYGRDVRGKVI 1013 Query: 998 AAMVVSKQQKKTRKGSRI 1015 A ++ + + T++G I Sbjct: 1014 AGVITGIRTQMTQRGKLI 1031 >gi|67459636|ref|YP_247260.1| DNA polymerase III subunit alpha [Rickettsia felis URRWXCal2] gi|75535968|sp|Q4UK40|DPO3A_RICFE RecName: Full=DNA polymerase III subunit alpha gi|67005169|gb|AAY62095.1| DNA polymerase III alpha chain [Rickettsia felis URRWXCal2] Length = 1207 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/1110 (38%), Positives = 632/1110 (56%), Gaps = 111/1110 (10%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALYAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I K I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNI------------KYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKLC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + S + A + + GDR Y + R Sbjct: 111 DHIDFEDLIEY-QEGLIALCCYTDGIVGKCLLARSEEQAMLFARKLQDILGDRFYFEIMR 169 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +++ E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HDLPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKTMHDAHDVLLCISAGVTKEYPDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM+ +FSDLP A++NTV + RC F + P+LP F K+ E Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDIS-----E 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + +R A GL RLA ++ Q +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIRKDAKEGLLARLATKFKSENIPLQNQEELKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVSL QA+ + A + + +L+ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQILAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAAAY Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ----------------FNI 814 VISYQTA++K +YP EFL A + LE++N +KI F Q+A+ F++ Sbjct: 765 VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINISEGYFSV 824 Query: 815 QIMPPSVNT-----PCVDFKVG-----------------DNR------------------ 834 + + P T P +VG D+R Sbjct: 825 KSVIPQAATCHPQGPLCHPRVGGYPEKVKTVLNHESMKMDSRFCGNDIKGSRNDIEDTGY 884 Query: 835 ------IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 I ++L AIKGV + + E A F S+ DF R+ K +N ++LE+L+ Sbjct: 885 DKEKSTIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPLKSINSKLLENLIK 944 Query: 888 AGALDCFGYSRMQLLQSLDNIQKY-AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +G D +R+QL S+ + Y A + + +N+ I + + S I + + Sbjct: 945 SGCFDELHDNRLQLFSSISKLLAYSASYHAEQESNQFSLI---KVSSLSPNILIASDYAD 1001 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSK 1004 N+++ F E +G + S HPL Y+ I ++ I + + N + LA ++ Sbjct: 1002 NNTLAFY-EFESMGLFISNHPLTQYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVI--- 1057 Query: 1005 QQKKTRKGSRIGWVT--FSEPAKEYEANFF 1032 Q+K +R +R +VT S+P +E + F Sbjct: 1058 QKKDSRMSARGRFVTLVLSDPENIFELSIF 1087 >gi|330950665|gb|EGH50925.1| DNA polymerase III subunit alpha [Pseudomonas syringae Cit 7] Length = 939 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/954 (42%), Positives = 569/954 (59%), Gaps = 55/954 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT F Sbjct: 766 YGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKF 825 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D+ RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ L+ Sbjct: 826 TVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIR 885 Query: 888 AGALDCFG---------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 +GALD G +R LL +L+ + A+ ++R + H ++ Sbjct: 886 SGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDL 939 >gi|116619157|ref|YP_821313.1| DNA polymerase III subunit alpha [Candidatus Solibacter usitatus Ellin6076] gi|116222319|gb|ABJ81028.1| DNA polymerase III, alpha subunit [Candidatus Solibacter usitatus Ellin6076] Length = 1151 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1039 (40%), Positives = 615/1039 (59%), Gaps = 32/1039 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YSLL+GA ++ ++ + + PA+A+TD NLF A++F A A+GI P Sbjct: 2 SFVHLHCHTDYSLLDGACDIDQLMKIMVEQKMPAVAMTDHGNLFGAVKFYNAAKASGIHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + + + + TN + +VLL +GY+ LI+LVS YL + Sbjct: 62 VIGCEVYVSQKGHKERTNTDR-----YNHLVLLCENQQGYKNLIKLVSTSYL-EGFYYKP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 RI L L + +EGLI ++ G I + A + + +FG + ++ +Q Sbjct: 116 RIDLDLLSQ-HSEGLIGMSACLRGHIPETILNDKYDDARRMAHQYGDIFGAKNFFLEIQD 174 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ ++V+L+ PLVATN+S +L ++D AH++LM + + +R R Sbjct: 175 HHLEQDKRLTPELVRLSSETGFPLVATNDSHYLRKDDARAHEILMCIQTGKSFNDPNRMR 234 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 TPD YLK R EM+ +F +L +L+ T EIA+RC L+ PRF DI E Sbjct: 235 WSTPDFYLKTREEMMQLFGELEHSLDRTWEIAQRCHVKLEKVLDPFPRF------DIPTE 288 Query: 307 EENELRNKAVA--GLEVRLA--QGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + VA G E R + AKG + ++Y +RLD E+ +I MKFSGYFL+ Sbjct: 289 HTTDTYFEYVARMGFEKRRGRLEAMKAKGTLKHDLEEYAERLDREIKMIQNMKFSGYFLV 348 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI++AK IPVGPGRGS AGS+ +YA+ ITDIDPL++ LLFERFLNP+R+S PD D Sbjct: 349 VWDFIRYAKDQGIPVGPGRGSAAGSLVSYAMEITDIDPLQYGLLFERFLNPERVSFPDVD 408 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC +RR EVI+YV KYG E+VAQIITF +L A+AA++DVGR L+MP +V+RL KL+ Sbjct: 409 VDFCMNRRGEVIQYVTQKYGREQVAQIITFNTLGARAAIKDVGRVLEMPLPEVERLTKLV 468 Query: 480 PNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P +SLQ AI + F+EA DP D +L+++ +LEGL R+ S HAAG+VI P Sbjct: 469 P--ATLNISLQEAIDQEPGFKEAARKDPRCDDVLKVALRLEGLSRNCSVHAAGVVISPLP 526 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597 L LVP+Y+ R ++ VTQF+M +EK L+K DFLGL TLTL+Q +L + +R GV + Sbjct: 527 LQDLVPLYKTNRDEI-VTQFDMGGLEKLQLLKMDFLGLTTLTLIQDALRLIKKRHGVTIV 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P DD TY + T G+FQ ESSGMR L QP +ED+ AL +LYRPGPI Sbjct: 586 PEDLPLDDKGTYEVFCKGITSGVFQFESSGMRDILRRYQPSRLEDLTALNALYRPGPIQG 645 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + RK G++ + P + +L+ET GVI+YQEQVMQI+ ++GYSL +AD+LRR Sbjct: 646 GMVDDFIERKWGRKAVQYDLPELQVLLEETYGVIVYQEQVMQISNRIAGYSLGDADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ+ERF+ GA + G ++ IF+L+ +FA YGFNKSH+AAYA +++ Sbjct: 706 AMGKKKLEEMVKQRERFVKGALERGFNQKKVEKIFDLMEQFAGYGFNKSHSAAYAYLAFV 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV+F+AA +T E N K+ K+ + R+ I+I+PP VN F + I Sbjct: 766 TAYLKAHYPVDFMAALLTSETGNTAKVVKYINECREMGIKILPPDVNHSEWSFTPDGDAI 825 Query: 836 YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + + AIK VG + I + A+ F SL +FC +VD +NRR++ESL+ AGA+D Sbjct: 826 RFGMGAIKNVGQSAVEAIGKTRAEVGKFPSLHEFCEKVDLGAVNRRMIESLIRAGAMDSL 885 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFE 953 +R Q +++ + +++R + +F L + + Sbjct: 886 EGTRSQKFAAVEGAMEAGARAQRDRESGQVGLFGEVIAADEPHSAPLPNIPDWSEKEKLA 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ +LGF+ +GHP+D Y + ++ + + + + ++ +K+ R+G Sbjct: 946 GEKELLGFWVTGHPMDRYMEKVAELANADTSSLEGLAKNHEVAICGVLTGIARKRNREGK 1005 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 +T + A EA F Sbjct: 1006 PWCAMTLEDRAGSVEALLF 1024 >gi|260772237|ref|ZP_05881153.1| DNA polymerase III alpha subunit [Vibrio metschnikovii CIP 69.14] gi|260611376|gb|EEX36579.1| DNA polymerase III alpha subunit [Vibrio metschnikovii CIP 69.14] Length = 1109 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1006 (40%), Positives = 594/1006 (59%), Gaps = 55/1006 (5%) Query: 56 LEFSQKACAAGIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 ++F A + GI+PIIG + + D L I +L GY+ L Sbjct: 1 MKFYGTAHSCGIKPIIGADFTLRSDEFADELT-------------KITILAKNNIGYKNL 47 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 L+S YL + I WL + EGLI+L+GG +G I RA + +AEK + Sbjct: 48 TLLISEAYLRGHVQHQPVIDKQWLVK-HAEGLIILSGGKNGEIGRALLKGNQALAEKCVE 106 Query: 173 TFKKLFGDRLYVNLQRHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ F D Y+ L R D ES + + LA +LP+VATN +FL+ E ++AH+ Sbjct: 107 FYQTYFADHFYLELVRTGRADE--ESYLHFALDLAEQTQLPVVATNEVVFLNAEQFDAHE 164 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + +A+ + RP+ +P YL+ EM +F+D+P+ALEN+VEIA+RC+ +++ Sbjct: 165 IRVAIHDGYTLEDPRRPKNYSPQQYLRTEQEMCELFADIPQALENSVEIAKRCNVTVRLG 224 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFEL 345 LP F + EE +++K GLE RL + +Y +RLD EL Sbjct: 225 EYFLPNF---PTGGLAIEEFLVVKSKQ--GLEERLEFLFPDPQVRAERRPEYDERLDIEL 279 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFE Sbjct: 280 QVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFE 339 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPDFD+DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L Sbjct: 340 RFLNPERVSMPDFDVDFCMDKRDQVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVL 399 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525 P+ VDR+ KLIP DP + +A + +E AD V L++ + LEG R+A Sbjct: 400 GHPFGFVDRISKLIPPDPGMTLE-KAFKAEPALQELYDADEEVKELIDKCRILEGCTRNA 458 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 HA G+VI ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ + Sbjct: 459 GKHAGGVVISPTTITDFAPLYCDAEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWA 518 Query: 586 LDFLAQRGVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 L + R + + IP D ++ LL T +FQLES GM++ ++ ++PDC Sbjct: 519 LGLINPRRTALGEEPLRIEAIPLQDEASFRLLQKSETTAVFQLESRGMKELIKRLKPDCF 578 Query: 641 EDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQE 693 EDIIALV+L+RPGP+ + +V N +RK+G+E I H + +L+ T G+I+YQE Sbjct: 579 EDIIALVALFRPGPLQSGMVDNFIDRKHGREVISYPDEKWQHESLKEILEPTYGIILYQE 638 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ Sbjct: 639 QVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRAIFKEGAENNGVDGELAMKIFDLV 698 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSH+AAYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + ++ Sbjct: 699 EKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECQRMG 758 Query: 814 IQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871 + ++PP +N+ F V +N I Y + AIKGVG I+++ S + F L DFC+R Sbjct: 759 LTVLPPDINSGLYSFNVDENGAIVYGIGAIKGVGEGPIEAILDSRSKNGYFKDLFDFCAR 818 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +D KK+N+RV+E L+ AGALD G R ++ SLD+ K A + ++F Sbjct: 819 IDLKKVNKRVIEKLILAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMF---- 874 Query: 932 GTFSD--KITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 G +D + +K++ V E E+ LG Y +GHP++ Y L K E+ Sbjct: 875 GVLTDAPEEVEQKYTQVPPWPEKVWLEGERETLGLYLTGHPINQYLKELPKYTSCRLNEA 934 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T R ++ LA +V++ + T++GSRIG +T + + E + Sbjct: 935 TPTRRDQSLTLAGLVIAARVMTTKRGSRIGLMTLDDRSGRIEVMLY 980 >gi|15604610|ref|NP_221128.1| DNA polymerase III subunit alpha [Rickettsia prowazekii str. Madrid E] gi|6226600|sp|O05974|DPO3A_RICPR RecName: Full=DNA polymerase III subunit alpha gi|3861305|emb|CAA15204.1| DNA POLYMERASE III, ALPHA CHAIN (dnaE) [Rickettsia prowazekii] gi|292572428|gb|ADE30343.1| DNA polymerase III alpha chain [Rickettsia prowazekii Rp22] Length = 1182 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1092 (38%), Positives = 622/1092 (56%), Gaps = 100/1092 (9%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ + PA+ ++D NLF +LEFS A +Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKKLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I N I+L+ GY+ L++L S + K Sbjct: 63 PIHGVILNIQYDIN------------AFAQILLIAKDETGYKNLLKLSSLTF----TKND 106 Query: 129 VRICLSWLQEIG-------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 +IC + IG EG+I L + G + + + A + + GDR Sbjct: 107 RKIC----EHIGFEDLIKYQEGVIALCCYTDGIVGKCLLARKQEQAILFARRLQAILGDR 162 Query: 182 LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y + RH +++ E+ +Q+A +P+VATN LF + + AHDVL+ ++ Sbjct: 163 FYFEIMRHDLPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTK 222 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 DR V+ + Y K+ +EM +FSDLP A++NT+ + RC F + P+LP F Sbjct: 223 EYPDRKTVSENCYFKSPAEMRKLFSDLPNAIQNTINLRERCYFAAHPNPPMLPNF---ST 279 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKF 353 DI E +R A GL RL A+ + +Y RL++EL++I M F Sbjct: 280 QDIS--ETYLIRKYATEGLLARLVTKFKAENISLEHQEKLKTEYFTRLNYELDIICNMNF 337 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 +GYFLIV+DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+ Sbjct: 338 AGYFLIVSDFIKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERI 397 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFDIDFCQ+RR+EVI YV++KYG RV QIITFG +QAKA ++DV R L +PY D Sbjct: 398 SMPDFDIDFCQERREEVINYVRSKYGPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLAD 457 Query: 474 RLCKLIPNDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYR 523 L +L+P +PVSL QAI + A + + +L+ S LEGL+R Sbjct: 458 YLTELVPFSAINPVSLEQAIREVPELANAAKGNGLYNLEGDAELIKLVLDTSLILEGLHR 517 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 H+STHAAGIVI L +VP+Y+D +D+ + ++MK+ E AGLIKFDFLGL+TLT++ Sbjct: 518 HSSTHAAGIVIAGTDLVDIVPVYKDANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVIT 577 Query: 584 KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 L ++G+K+D + FDD +TY +L +G+FQ ES GM+ AL ++PD I D+ Sbjct: 578 NCKKLLKEQGIKIDFDDMTFDDKKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDL 637 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 IAL +LYRPGP++NI Y K+ ++ +H L++P+L+ET GV+IYQEQV +IAQ+L+ Sbjct: 638 IALGALYRPGPMENIPTYIACKHKLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLA 697 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GY+L AD+LRRAMGKKIK+EM++Q+E F+ GA N IS + A +IF +AKFA YGFNK Sbjct: 698 GYTLGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNK 757 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 +HAAAY VISYQTA++K +YP EFL A + LE++N +KI F Q+A+ I+I+ P++N Sbjct: 758 AHAAAYGVISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINI 817 Query: 824 PCVDFKV-------------------------------------GDNRIYYSLAAIKGVG 846 F V ++ I ++L AIKGV Sbjct: 818 SEGYFSVKSSNTVITHSTKSVISRLNCDIKKIAKDTAVKPLYCKDESTIIFALGAIKGVT 877 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + + E A F S+ DF R+ K +N ++LE+L+ AG D +R+QL S+ Sbjct: 878 ANFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSI 937 Query: 906 DNIQKYA-QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 + Y+ + ++ +N+ I + + S I + + +++ F E +G + S Sbjct: 938 PKLIAYSTSYHQEQESNQFSLI---KVSSLSPTILVSSDYADKNTLAFY-EFEAMGLFLS 993 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVT--F 1020 HPL Y+ I ++ I + + N + LA ++ Q+K +R +R +VT Sbjct: 994 NHPLTEYQGIFSRLNILNTRDLYNKLPNGTNRVTLAGVI---QKKDSRMSARGRFVTLVL 1050 Query: 1021 SEPAKEYEANFF 1032 S+P +E F Sbjct: 1051 SDPENIFELTIF 1062 >gi|224369575|ref|YP_002603739.1| DnaE [Desulfobacterium autotrophicum HRM2] gi|223692292|gb|ACN15575.1| DnaE [Desulfobacterium autotrophicum HRM2] Length = 1184 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1050 (39%), Positives = 627/1050 (59%), Gaps = 39/1050 (3%) Query: 8 SPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +PS F HL VH+ +SLL+GA+ L+ +L + +AITD +F F++KA G Sbjct: 4 TPSPFCHLHVHTEFSLLDGAIRLDALLKRCKEFNMDTVAITDHGTMFGTAPFNEKARKVG 63 Query: 67 IQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 IQPI+GC++ + +++ N+G + +VLL EGY L +LVS + + Sbjct: 64 IQPILGCEVYVAPRSIRNKTAEDNKG------LNHLVLLAKDREGYGNLCKLVS-IAQFE 116 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182 RI L + ++GLI L+ G I + N +A + FG D Sbjct: 117 GFYYKPRIDRELLTKY-SKGLIALSACLKGDIPQKIIHNQMDLAFDSARYYLDTFGEDNF 175 Query: 183 YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ +Q++ + + +Q + +++ +P+VATN+ +LS + AH+ L+ + ++ Sbjct: 176 FLEIQKNGMEIQEKVNQGLWEVSKKLSIPMVATNDCHYLSRDHVRAHEALLCIQTGNTLN 235 Query: 242 QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---- 296 +R + D Y K+ EM++ F P A+ENT+ IA+RC+ PR+ Sbjct: 236 DANRFKFDSDELYFKSADEMIADFKTYPGAIENTLLIAKRCNVEFGEKVYHFPRYTSAQG 295 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKF 353 EK +D + + +A G E RL + + D YR+RL +E+ VI M F Sbjct: 296 EKSGEDCVQTAGEIFKRQAQEGFERRLKM--LKRKNPNLDEALYRERLAYEIGVILDMGF 353 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIVADFI++++++NIPVGPGRGS AGS+ AYA+ IT +DP+ L+FERFLNP R+ Sbjct: 354 PGYFLIVADFIRYSREHNIPVGPGRGSAAGSMVAYAMEITALDPIAHGLIFERFLNPSRI 413 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 SMPD D+DFC + RDEV +YV ++YG + V+QIITFG L+AKA +RDVGRAL +P +V Sbjct: 414 SMPDIDVDFCIEGRDEVYKYVIDRYGGADYVSQIITFGKLKAKAVVRDVGRALSVPLPEV 473 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 D L KLIP++ + QA+ D R E DP L++I+ LEGL R ASTHA G+ Sbjct: 474 DVLAKLIPDNAKN--LGQALKDVPRIMELVNQDPVKKELIDIALLLEGLPRQASTHACGV 531 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI D+PL + +P Y+ ++ VTQF+M ++EK GL+KFDFLGL+ LT+++ +LD L ++ Sbjct: 532 VISDKPLVEYLPTYKGKEGEV-VTQFDMNFVEKLGLVKFDFLGLRNLTVIKNTLDLLKKQ 590 Query: 593 GVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +V DL I DD TY LL T G+FQLESSGM++ + +QP C DI+ALV+LYR Sbjct: 591 SKEVPDLLEIDMDDPPTYELLARADTTGVFQLESSGMKELITRLQPACFSDIVALVALYR 650 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+D+ + Y RK+G+E +V + P ++P+LKET GVI+YQEQVM+IA +L+ YS+++ Sbjct: 651 PGPLDSGMADSYVERKHGREDVVYLFPQLEPILKETYGVILYQEQVMKIAGVLANYSMAD 710 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD LR+AMGKKI M++ + F+ GA +N + A +F+L+ KF YGFNKSH+AAY Sbjct: 711 ADGLRKAMGKKIPAMMEEHRGLFLKGAKENNLDGAKAAELFDLMEKFGGYGFNKSHSAAY 770 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+I +QTA++K HYP+E++AA MT +M N++ + KF + R I ++PP VN F Sbjct: 771 ALICFQTAYLKAHYPLEYMAALMTSDMSNIDSVVKFIDECRNHEINVLPPDVNESESVFT 830 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V I + LAA+KG+G+ I+E S + PF S+ DFC RV+ K+N+RVLE+L+ Sbjct: 831 VAPAAIRFGLAAVKGIGSAAIDSIVEIRSQEGPFTSIYDFCERVNLTKVNKRVLEALIKC 890 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D G R Q++ L++ + +++ + + ++FA +G + + L S+ + Sbjct: 891 GAFDSTGSKRSQMMAVLEDALDHGNRIQREKADAQMDLFADTEG--GEALPLSVPSMPDI 948 Query: 949 SVRFEN-----EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 +N E+ LGFY +GHPLD Y+ +++K E V T G ++R+ + Sbjct: 949 PELDDNDLLAMEKETLGFYITGHPLDRYEEMIKKFANVNSETLVETPEGQSVRMGGALRP 1008 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + KT+KG + + + E FP Sbjct: 1009 LKILKTKKGDMMAFAALEDKKGSVEVVIFP 1038 >gi|119946582|ref|YP_944262.1| DNA polymerase III, alpha subunit [Psychromonas ingrahamii 37] gi|119865186|gb|ABM04663.1| DNA polymerase III, alpha subunit [Psychromonas ingrahamii 37] Length = 1173 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1055 (41%), Positives = 616/1055 (58%), Gaps = 54/1055 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K P F+HL+VHS YS+++G + ++ K AA PA+AIT+ N ++F A AG Sbjct: 12 KQPKFIHLRVHSDYSMVDGVTKIKPLVAKAAALNMPALAITEQTNFCGLVKFYGAAHDAG 71 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G +D ++ L Q + I L GY+ L EL+S+ YL Sbjct: 72 IKPIVG--VDFWVKSELLADEQFR--------ITALAMNNAGYKNLTELISKAYLRGHVG 121 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E +G+I+L+GG G + + + ++A + + +++ F R Y+ L Sbjct: 122 GRAVIDQDWLAE-HNQGIILLSGGKDGDLGKVLLKGNHELAVEIIQFYQQYFAQRYYIEL 180 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R +R + + A ++LP+VATN +F + Y+AH++ + + + R Sbjct: 181 IRTNRLNEETYLHYALDWAEKYQLPVVATNEVVFADKALYDAHEIRVCINQGYTLGDNRR 240 Query: 246 PRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE----- 299 P+ D YL+++ EM +F+D+PEAL+N+VEIA+RC+ L++ LP F + Sbjct: 241 PKQYSDEQYLRSQEEMCELFADIPEALKNSVEIAKRCNVTLRLGEYFLPDFPTGDMSITD 300 Query: 300 --CDDIQKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKF 353 CD +K GLE RLA + A Y QRL EL+VI M F Sbjct: 301 YFCDVSRK------------GLEDRLAILFDKNAPEFADIRAPYDQRLQIELDVINTMGF 348 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL LLFERFLNP+R+ Sbjct: 349 PGYFLIVMEFIQWSKDNKIPVGPGRGSGAGSLVAYALKITDLDPLELELLFERFLNPERV 408 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFDIDFC DRRDEVI +V YG + V+QIITFG++ +KA +RDVGR L PY VD Sbjct: 409 SMPDFDIDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVD 468 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 + KLIP P +S +A A++ R +E V L+++ + LEG R+A HA G+V Sbjct: 469 GISKLIPPTPGMTLS-KAFAEEPRLQERYDGSEEVRALIDMCRTLEGTIRNAGKHAGGVV 527 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQR 592 I ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++Q +LD A + Sbjct: 528 ISPTTITDFSPLYCDELGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIVQWALDMANAHK 587 Query: 593 GVKVDLSL----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + + +L I + + LL T +FQLES GM+ + +QPD ED+IALV+ Sbjct: 588 HARGEETLFIEKICLTEPACFELLKRYETTAVFQLESRGMKDLIRRLQPDSFEDMIALVA 647 Query: 649 LYRPGPIDNIVVYN--NRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 L+RPGP+ + +V N RK+G+E + HP ++ +L T G+I+YQEQVMQIAQ+ Sbjct: 648 LFRPGPLQSGMVDNFIERKHGREAVSFPDEKWQHPSLEEILAPTYGIILYQEQVMQIAQV 707 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 LSGY+L AD+LRRAMGKK EEM KQ+E F GA NGI +A+ IF+L+ KFA YGF Sbjct: 708 LSGYTLGGADMLRRAMGKKKPEEMAKQRETFEQGAIDNGIDGELAMKIFDLVEKFAGYGF 767 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSH+AAYA++SYQT WMKT YP F+AA M+ +MDN EKI + + + + PP V Sbjct: 768 NKSHSAAYALVSYQTLWMKTFYPSYFMAAVMSADMDNTEKIVTLVAECQSMGLDLGPPDV 827 Query: 822 NTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNR 879 N F V D RI Y + A+KGVG I+EA +A F L DFC+R+D K N+ Sbjct: 828 NEGLFKFNVDPDLRIIYGIGAVKGVGEGPVDAIIEARTAGGKFIDLFDFCNRIDLKHCNK 887 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R+LE L+ AGALD G R L+++L N K A +K + ++F T S++I Sbjct: 888 RILEKLILAGALDKLGPHRAALMETLPNALKSALQHKKAESFGQSDLFGVLT-TDSEEIA 946 Query: 940 LEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 + SV+ + E+ LG Y +GHP++ Y+ +R + VA RG N R+ Sbjct: 947 DKFSSVDKWPEKQWLAGEKETLGLYLTGHPINQYETDIRAFHCLKLSDLVANRRGQNSRV 1006 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +++S + T+ G R+G +T + + E F Sbjct: 1007 AGLILSMRIMVTKAGKRMGIITLDDKSARMEITVF 1041 >gi|33596339|ref|NP_883982.1| DNA polymerase III subunit alpha [Bordetella parapertussis 12822] gi|33602375|ref|NP_889935.1| DNA polymerase III subunit alpha [Bordetella bronchiseptica RB50] gi|33566108|emb|CAE37008.1| DNA polymerase III alpha subunit [Bordetella parapertussis] gi|33576814|emb|CAE33893.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica RB50] Length = 1163 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1007 (40%), Positives = 601/1007 (59%), Gaps = 54/1007 (5%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + P FVHL+VHS +S+ +G + +++++ ++A QPA+A+TD +N+F ++F + Sbjct: 1 MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AG++P+ G + + D+ + PF ++LLV +GY L EL++R + Sbjct: 61 GARGAGVKPVAGSDVWLTNDDDRE------KPF----RLLLLVRNHQGYLNLCELLTRSF 110 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L +Q K + WLQ G EGLI+L+G G + +A ++ A + +LF Sbjct: 111 LENQYKGRAEVRREWLQ--GQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPG 168 Query: 181 RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Y+ LQR G + Y ++ ++LA LP+VAT+ FL ++++AH+ + +A Sbjct: 169 SYYIELQRAGFDGDETYTQA-AMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGE 227 Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 +++ R R T D YL + EM F+D+P AL NTVEIARRC+ L + P LP F Sbjct: 228 ILANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPT 287 Query: 298 KE---CDD--IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIA 349 + DD +Q EE GLE RL + Y +RL +E I Sbjct: 288 PDGVTLDDYLVQLSEE---------GLEKRLQFLFPDEAERNAKRDQYYERLRWECKTII 338 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLN Sbjct: 339 QMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLN 398 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY Sbjct: 399 PERVSMPDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPY 458 Query: 470 SQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 D L KLIP +PA P +L+ + D+ F++ + V L+++++ LEGL R H Sbjct: 459 LFCDALSKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMH 518 Query: 529 AAGIVIGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 A G++I L+ P+Y + + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ Sbjct: 519 AGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVR 578 Query: 588 FLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 F+ Q D+ + DD Y +L T +FQLES GM++ L+ ++P EDII Sbjct: 579 FVRQFNADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDII 638 Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 A+++LYRPGP+++ +V + NRK+G+ + HP ++ L+ T GVI+YQEQVM I+Q++ Sbjct: 639 AMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQII 698 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 GYSL AD+LRRAMGKK EEM K +E F GA + G +AV +F+L+ KFA YGFN Sbjct: 699 GGYSLGGADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFN 758 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSH+AAYA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ F +DA+ ++++PP VN Sbjct: 759 KSHSAAYALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVN 818 Query: 823 TPCVDFK-VGDNR---------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 F+ V D + Y L A+KG G I+ A + PF +L DFC R Sbjct: 819 ASGYRFEPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRR 878 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V +NRR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + Sbjct: 879 VSKHAVNRRTIEALIKAGAFDTIEPNRAAMLASVGTAMEAAE--QAARSANQSSLFGDDS 936 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 G L K + N E+ LG+YFSGH D ++ +R++ Sbjct: 937 GDVVAG-ELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRI 982 >gi|56477932|ref|YP_159521.1| DNA polymerase III alpha chain [Aromatoleum aromaticum EbN1] gi|56313975|emb|CAI08620.1| DNA polymerase III alpha chain [Aromatoleum aromaticum EbN1] Length = 1164 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1046 (40%), Positives = 625/1046 (59%), Gaps = 44/1046 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS YS+ +G + ++ + + AAD PA+ I+D NLF ++F + A G++ Sbjct: 7 PCFIHLRLHSEYSISDGIVQIDQAIARAAADAMPALGISDLANLFGMVKFYKGARGKGMK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P++G + +TN P +L+ +GY +L EL++R YL ++ + Sbjct: 67 PVVGV--------DTWITNDADRDKPF--RALLICRNRKGYGQLCELLTRAYLDNKYRSR 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + W + L+ L+G G I +A + VAE+ + +LF D Y+ LQR Sbjct: 117 AEMHRQWFADGAASDLLCLSGAMGGDIGQALVNGNPDVAERLAAEWAQLFPDAFYIELQR 176 Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G + Y Q VQLA LP+VAT+ FL ED++AH+ + +A V++ K RP Sbjct: 177 AGHPGTEAYIR-QAVQLAGKLGLPVVATHPVQFLEPEDFKAHEARVCIAQGYVLADKRRP 235 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + Y K++ EM ++F+D+PEALEN+VEIARRCS +Q+ LP+F E + Sbjct: 236 RDFTEEQYFKSQDEMCALFADIPEALENSVEIARRCSLTVQLGKNFLPQFPTPEGMTL-- 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVAD 362 + L +A +GLEVRLA+ A+ + Y RL FE + I +M F GYFLIVAD Sbjct: 294 --DEFLVAEAKSGLEVRLAELYPAEAERERQRRTYEDRLKFETDTIVQMGFPGYFLIVAD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK+N +PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FINWAKENGVPVGPGRGSGAGSLVAYSLRITDLDPLAYALLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQD R VI YV+++YG E V+QI TFG++ +KA +RDVGR L +PY DRL KLIP + Sbjct: 412 CQDNRYRVIEYVRSRYGKEAVSQIATFGTMASKAVVRDVGRVLDLPYGLCDRLSKLIPIE 471 Query: 483 PAHPVSL-QAIADDSRFREARLAD----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 A PVSL +A +S+ E + D SV L +++ LEGL R+ HA G++I Sbjct: 472 GAKPVSLAKAYEMESQIGEM-MKDGNDGESVQELWSLAEPLEGLSRNVGMHAGGVLIAPG 530 Query: 538 PLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595 L+ P+Y D PV+QF+ +E GL+KFDFLGL+ LT+++ +++++ + G K Sbjct: 531 KLTDFCPLYIADGDEATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELAVEYVERLTGEK 590 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 DL+ +PF D Y +L T IFQ+ES GM++ L+ + PD EDIIA+++LYRPGP+ Sbjct: 591 PDLAALPFTDPAAYQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPL 650 Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 + +V + RK G+++I HP + P L T GVI+YQEQVMQI+Q++ GY+L AD+L Sbjct: 651 GSGMVDDFILRKKGQQEIDYFHPDLKPCLDPTYGVIVYQEQVMQISQIIGGYTLGGADML 710 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K +E +GA + G +A +F+L+ KFA+YGFNKSH AAYAV++ Sbjct: 711 RRAMGKKKAEEMAKHRETIAAGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVT 770 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+ F+AA+M+ ++DN + I+ F +DA + I+PP VN F D Sbjct: 771 YHTAWLKAHHCAAFMAATMSADLDNTDTIRIFFEDAVANGVTILPPDVNASDFRFVPTDR 830 Query: 834 R-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 + I Y L A+KG G R I+ A A F L DFC+RVD + +NRRV+E+L+ AGA Sbjct: 831 KTIRYGLGAVKGAGEPAVRAILAAREAGGAFRDLFDFCARVDRRAVNRRVIEALIRAGAF 890 Query: 892 DCFGYS----RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 D S R +LL ++ ++ Q ++ G + + +S Sbjct: 891 DLIEPSGTADRARLLATVGLAMEAAEQAAANAMQGGLFDLIPEAAGAAPEYVRARPWSER 950 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 R + E+ +GF+ SGHP + ++ +R+ + E + + + LA +V+ + Sbjct: 951 E---RLKEEKLAIGFFLSGHPFNSFRKEVRRFVRRPLAELEPS--RDLLMLAGVVMDVRT 1005 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 K T +G ++ +V + + E + F Sbjct: 1006 KMTGRG-KMAFVVLDDGSHVREVSVF 1030 >gi|296159171|ref|ZP_06841998.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1] gi|295890732|gb|EFG70523.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1] Length = 1193 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1028 (40%), Positives = 617/1028 (60%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++++ A D Q A+A+TD N F + F ++A G++ Sbjct: 7 PRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC + I D+ + ++ ++LLV GY L EL+S+ L +Q + Sbjct: 67 PIAGCDVWITNPDDREKPSR----------LLLLVKDRRGYLNLCELLSKASLTNQYRGR 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL+ EGL+ L+G G + A + + A++ L + K+F Y+ +QR Sbjct: 117 AEIEAGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIEVQR 176 Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 G + Y + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ R Sbjct: 177 CGQPGGEHYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRS 235 Query: 247 -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+ L++ P LP F + + Sbjct: 236 KRFTPEQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + + GLE RL Q A + + Y QRL+FE I +M F GYFLIVAD Sbjct: 294 --DDYLVHLSKEGLEKRLEQLYPDAAEREAQRETYYQRLEFECGTIIKMGFPGYFLIVAD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 412 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LLE++Q++EGL R+ HA G++I L+ Sbjct: 472 PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 532 FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSL 591 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPGP+D I Sbjct: 592 AQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+E + P ++ +LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 652 PSFCARKHGREVVEYPDPRVESVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM + +E F GA+KNG++ A IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 712 KKKAEEMAEHRELFRQGAAKNGLAGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+M+L MD+ +K+K +D + ++PP VN F+ D + Sbjct: 772 LKAHHPAEFMAANMSLAMDDTDKVKILFEDCLVNKMAVLPPDVNLSAYRFEPVAEADGKR 831 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A + PF + DFC+RVD + +NRR +E+L+ AGA Sbjct: 832 SRTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAF 891 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN-- 947 D +R QL+ S+ + A+ N A + G F D + V+ Sbjct: 892 DTLHANRAQLIASVSLAMEAAEQASAN---------ALQAGLFDMGDSPSQGHELVDEPE 942 Query: 948 --SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + + E+ LGFY SGH D YK +R+ + + ++ G + +A ++ S Sbjct: 943 WPEKKKLQEEKAALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAGVIASL 998 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 999 RTQMTQRG 1006 >gi|194288945|ref|YP_002004852.1| DNA polymerase III subunit alpha [Cupriavidus taiwanensis LMG 19424] gi|193222780|emb|CAQ68783.1| DNA polymerase III, alpha subunit [Cupriavidus taiwanensis LMG 19424] Length = 1170 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1040 (41%), Positives = 621/1040 (59%), Gaps = 56/1040 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL++HS YS+++G + L++ + AAD A+A+TD N F + + ++A G+ Sbjct: 3 APRFVHLRLHSEYSIVDGIVRLDDAVKAAAADGMGALALTDLANAFGLIRYYKEARGKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P++G ++ +TN P ++LLV GY L L+SR +L +Q + Sbjct: 63 KPVVGA--------DVWLTNAEDRDKPA--RLLLLVQDRRGYLNLCMLLSRAWLGNQHRG 112 Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 I +W QE G + GLI L+G G I A ++ A + + +F R Sbjct: 113 RAEIDPAWFQEPGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWAAVFPQR 172 Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR H G D Y + Q VQLA + +LP+VAT+ F++ +DY AH+ + +A + Sbjct: 173 FYIELQRAGHAGTDAYVQ-QAVQLAASLQLPVVATHPVQFMTPDDYTAHEARVCIAEGEL 231 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D Y K + EM ++F+D+P ALEN VEIARRC+ L++ P LP F Sbjct: 232 LANPRRTRRFTTDQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L A GLE RLA + +Y RL+FE I +M F G Sbjct: 292 DGMSL----DDYLVFMAKEGLEKRLAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPG 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y VD + Sbjct: 408 PDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGI 467 Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+++ A ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 468 AKLIPFKPGKLVTIEEAKKEEPLLTERERNEEEVRQLLELAQRVEGMTRNVGMHAGGVLI 527 Query: 535 GDRPLSQLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSL 586 L+ P+Y D S + V+Q++ +E AGL+KFDFLGL TLT+L ++ + Sbjct: 528 APGKLTDFCPLYTQGGQNDGMSGV-VSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYI 586 Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 L + S IP DD + +L T T+ +FQLES GM+ L+ +PD EDIIAL Sbjct: 587 RRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIAL 646 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 V+LYRPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYS Sbjct: 647 VALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYS 706 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM + + F GA KNG+S A +IF+L+ KFA YGFNKSHA Sbjct: 707 LGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNKSHA 766 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + I ++PP VN Sbjct: 767 AAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKIAVLPPDVNASEY 826 Query: 827 DFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F D + I Y L IKG G I+ A ++PF L DFC RVD +++NRR +E+L Sbjct: 827 RFAPTDPKTIRYGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEAL 886 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGA D +R QLL S+ + A+ +K + ++F G D E Sbjct: 887 IRAGAFDSLNDNRAQLLASVPIAMEAAE--QKAESANQVSLF-DLMGDAGDAHRPELLDE 943 Query: 946 ENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVAT--------IRG 992 S + + E++ LG+YFSGH D Y+ +R+ + G E+ V +RG Sbjct: 944 PRWSPKRTLQEEKQALGYYFSGHLFDAYRDEVRRFNKGTLAGLEKEVQGNGGGFGRDVRG 1003 Query: 993 NNIRLAAMVVSKQQKKTRKG 1012 I A ++ + + T++G Sbjct: 1004 KTI--AGVISGMRTQMTQRG 1021 >gi|158319634|ref|YP_001512141.1| DNA polymerase III DnaE [Alkaliphilus oremlandii OhILAs] gi|158139833|gb|ABW18145.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs] Length = 1164 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1061 (38%), Positives = 629/1061 (59%), Gaps = 61/1061 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VH+ YSLL+G +N ++++ AIAITD ++F ++F + A GI Sbjct: 2 SNQFVHLHVHTEYSLLDGFTVINKAMERVKEMGMNAIAITDHGSMFGVVDFYKAAKKNGI 61 Query: 68 QPIIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 +PIIGC++ + +D K NQG +VLL EGYQ +I++VS +L Sbjct: 62 KPIIGCEVYTAPRSMADKDPQKDKNQG--------HLVLLAKNEEGYQNIIKMVSNGFL- 112 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR- 181 + RI L E ++G+I L+ +G I + + + A+ L +F + Sbjct: 113 EGFYYKPRIDYDEL-ERHSKGIICLSACLAGDIQQLLLQDQYESAKALALRLNAMFEENS 171 Query: 182 LYVNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ H ++ + + +++L+ +PLVATN++ ++++ED +AHD+L+ + +V Sbjct: 172 FYLELQDHNMAEQKKVNLGLIKLSRETGIPLVATNDAHYINKEDAKAHDILLCIQTGKIV 231 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 ++R R D YLK+ EM+ IF PEA+ NTV+IA +C+F + LP + + Sbjct: 232 EDQERMRFPNDEFYLKSPEEMMKIFDFAPEAISNTVKIAEQCNFDFDFNTIHLPEYHVPQ 291 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D+ KE+ LR GL R ++ RL+ EL+VI +M + YFLI Sbjct: 292 --DVNKEDY--LRKLCFEGLNKRYTS-------VTEELESRLEGELSVIEKMGYVEYFLI 340 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI++AK N IPVGPGRGS AGS+ AY L ITD+DP++++L+FERFLNP+R+SMPD D Sbjct: 341 VWDFIKYAKDNGIPVGPGRGSAAGSIVAYTLGITDVDPIKYNLIFERFLNPERISMPDID 400 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC +RR+EVI YV+ KYG ++VAQIITFG++ A+AA+RDVGR + MPY++VD++ K I Sbjct: 401 IDFCYERREEVIDYVKQKYGEDKVAQIITFGTMAARAAIRDVGRVINMPYNEVDKIAKQI 460 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P + +A+ + + + L++++++LEG+ RHASTHAAG+VI +PL Sbjct: 461 PFAIGMTIE-KALKMNPELKSIYEENEQGRYLIDMARRLEGMPRHASTHAAGVVIAKKPL 519 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+Y V D TQF M +E+ GL+K DFLGL+TLT+++ ++D + + G+K+DL Sbjct: 520 KEHVPLY--VHDDNSTTQFTMGTLEELGLLKMDFLGLRTLTVIKDAIDLIEKNHGIKLDL 577 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S +DD + Y L++ TLG+FQLES+GM Q L+ ++P+C EDIIA +SLYRPGP+D+I Sbjct: 578 SDSKYDDEKVYDLISKGDTLGLFQLESAGMIQFLKELKPNCFEDIIAGISLYRPGPMDSI 637 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y KN EKI IH ++P+L T G ++YQEQ+MQI + L+GYS +D++RRAMG Sbjct: 638 PRYIENKNNPEKIKYIHESLEPILNVTYGCMVYQEQIMQIVRDLAGYSYGRSDLVRRAMG 697 Query: 719 KKIKEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 KK + M+++++ FI +G +NG+ + +A I++ + FA+YGFNKSHA Sbjct: 698 KKKMDVMEQERKNFIYGIVNEKGEVEVAGCIRNGVPEDVANKIYDEMIDFANYGFNKSHA 757 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYAV++Y+TA++KT+Y VEF+AA MT M N K+ ++ QD ++ NI+I+PPS+N Sbjct: 758 AAYAVLAYETAYLKTYYKVEFMAALMTSVMGNTSKVVQYIQDCKKQNIKILPPSINRSFS 817 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARH---IMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V I ++L A+K VG + I E + D F + DFC RV+SK +N+R +E Sbjct: 818 KFTVEGESIRFALGAVKNVGIGMINNLVQIRETTGD--FSTFLDFCQRVESKDINKRAVE 875 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLE 941 SL+ GA D G +R QL+ S + I Q ++ + ++F E + + Sbjct: 876 SLIKCGAFDNMGGNRAQLMASFEGIMDNIQQEKRRKLEGQIDLFQMNEEMDASMNTVNFP 935 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---------G 992 + +R E+ V+GFY SGHPL Y+ L ++ + + + G Sbjct: 936 DIKDFSEKIRLSMEKEVVGFYISGHPLSEYEKELEQIVSANSAQLIEAMENLAESQLKDG 995 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I + M+ K TR + ++ + E FP Sbjct: 996 QPIIVGGMIAEINSKITRNNQMMAFIVLEDLFGSLECIVFP 1036 >gi|319763344|ref|YP_004127281.1| DNA polymerase iii, alpha subunit [Alicycliphilus denitrificans BC] gi|317117905|gb|ADV00394.1| DNA polymerase III, alpha subunit [Alicycliphilus denitrificans BC] Length = 1182 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1004 (40%), Positives = 585/1004 (58%), Gaps = 52/1004 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ + A D QPA+A+TD NNLF A++F ++ G++PI Sbjct: 2 FVHLRLHTEFSVVDGTTRIDEAVKAAAKDGQPALAVTDLNNLFGAVKFYKEGRGKGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ + G P +VLLV +GY L EL++R + + K Sbjct: 62 VGAEVCLE-------GDAGAPP----SRMVLLVQNRQGYLNLSELLTRAWTRNVVKNLPL 110 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 WL E+ EGLI+L G +GP+ +A A L +F R Y+ +QR Sbjct: 111 CTWDWLAEL-NEGLIVLAGAQAGPVGQALMKGDDDGAAAVALRLAGIFPHRFYIEIQRAG 169 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D + VQLA +LP+VAT+ F + + YEAH+ + +A +++ + R R Sbjct: 170 RADDEAHVTTAVQLAARLQLPVVATHPVQFATADGYEAHEARVCIAEGEILANQRRVRRF 229 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ +EM ++F+D+P A+ NT+EIA+RC+ L + P LP F I E Sbjct: 230 TREQYFKSGAEMQALFADVPSAIANTLEIAKRCNLTLVLGKPQLPDFPTPGGMAI----E 285 Query: 309 NELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R + GL+ RL + Y +RL+FEL I +M F GYFLIV DFIQ Sbjct: 286 EYFRVASYDGLKERLLHLFPDEAERERQRLRYEERLEFELGTILKMGFPGYFLIVGDFIQ 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 346 WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483 RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 406 NRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465 Query: 484 ----AHPVSLQAIADDSRFR--------EARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 A+P + D + + E + V ++E++Q+LEG+ R+ HA G Sbjct: 466 TYTLAYPPEPKKEGDKNNYALELEPMLYERVRKEEDVRTIIEMAQQLEGMTRNIGMHAGG 525 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + DF+ Sbjct: 526 VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRA 585 Query: 592 RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R + +P DD TY L T +FQ ES GM+ L+ +P +ED+IAL + Sbjct: 586 RHKGQENFAFENVPLDDAPTYRLFADGMTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 646 LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM + + F GA++ GIS+ A +F+L+ KFA YGFNKSHAAA Sbjct: 706 GADMLRRAMGKKKPEEMAEHRLIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVD 827 Y++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + F I PP +N Sbjct: 766 YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGITFEPPDINRGNYR 825 Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKK 876 F+ V D I Y L A+KG G I+ A + PF SL DFC RVD + Sbjct: 826 FEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGQGVGPQGGTRGPFKSLFDFCVRVDRSR 885 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENIFAHEKGTF 934 +N+R +E+L+ AGA D +R L+ S+D + AQ N+ + + G+ Sbjct: 886 INKRTVEALIKAGAFDALHLNRAALVASIDRAFDFANAQLANANQGGLFDMMGDDAIGSS 945 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + L + + R E+ +GFY SGH D + +R+ Sbjct: 946 TQEPDLVEATPWGIKERLMQEKTAVGFYLSGHLFDEVQQEVRRF 989 >gi|28198096|ref|NP_778410.1| DNA polymerase III subunit alpha [Xylella fastidiosa Temecula1] gi|182680724|ref|YP_001828884.1| DNA polymerase III subunit alpha [Xylella fastidiosa M23] gi|32129492|sp|Q87EY0|DPO3A_XYLFT RecName: Full=DNA polymerase III subunit alpha gi|28056156|gb|AAO28059.1| DNA polymerase III alpha chain [Xylella fastidiosa Temecula1] gi|182630834|gb|ACB91610.1| DNA polymerase III, alpha subunit [Xylella fastidiosa M23] gi|307579189|gb|ADN63158.1| DNA polymerase III subunit alpha [Xylella fastidiosa subsp. fastidiosa GB514] Length = 1193 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1054 (39%), Positives = 628/1054 (59%), Gaps = 74/1054 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53 + SFVHL +H+ +SL + + + N+L + PA+A+TD NNLF Sbjct: 3 TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 62 Query: 54 SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 + ++F + A GI+PI G L I ++ P+ + LL GY L Sbjct: 63 ALIKFYKAAETVGIKPISGADLLIAEPEH--------PPW----GMTLLCRDHAGYLNLS 110 Query: 114 ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 +L+SR +L + V + W+++ + L L G S + + +AE++L Sbjct: 111 QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LAGQLLAKGRADLAEQQLA 168 Query: 173 TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++ +FGD L++ L R R + +Q+A +P++A+N+ FL + D+ AH+ Sbjct: 169 DWQHVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVQSDFLAHEAR 228 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 229 VCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFADIPDALDNTRTLAQRCNIEMRLGTY 288 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 LP + + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I + Sbjct: 289 FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 344 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP Sbjct: 345 MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNP 404 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 405 ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 464 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522 VD + KLIP+ ++L+ + + A L A+ V LL ++++LE L Sbjct: 465 LVDSVAKLIPSTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PL++ P++ + R PVTQF+ +E+ GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632 LT++ ++ + +R + VD++ +P DD TY + + T +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L Sbjct: 703 EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 N++++ P++N F+ + I Y L AIKGVG + I++ P+ SL DFC+ Sbjct: 823 NLKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV S KLNRR LE+++ AGALD G +R ++ L + K + + + R + ++F + Sbjct: 883 RVTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNA 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988 + GT ++ L + + E+ LG YFSGHP D Y+ ++++ G ++ Sbjct: 943 DPGTPVIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1002 Query: 989 TI-----RGN----------NIRLAAMVVSKQQK 1007 I RGN N LA +VVS ++K Sbjct: 1003 RILGSQQRGNGEKRTWQPEVNTILAGLVVSVRRK 1036 >gi|260892340|ref|YP_003238437.1| DNA polymerase III, alpha subunit [Ammonifex degensii KC4] gi|260864481|gb|ACX51587.1| DNA polymerase III, alpha subunit [Ammonifex degensii KC4] Length = 1139 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1038 (40%), Positives = 606/1038 (58%), Gaps = 36/1038 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA + +++ + Q A+AITD ++ ++F + GI+PI Sbjct: 3 FVHLHLHTEYSLLDGAARIKDVVKRAKELGQNALAITDHGVMYGVVDFYKACQEVGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + MT++ +VLL EGY+ LIELVSR +L +G Sbjct: 63 LGCEVYVAPRG---MTDRTPKVDDNPYHLVLLAENEEGYRNLIELVSRAFL--EGFYYKP 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 +L +GLI L+ +G + + AE+ ++ +FG D ++ LQ H Sbjct: 118 RVDKYLLAQKAKGLIALSACLAGEVAAHLLAGDFKKAEEAAGEYRDIFGKDNFFLELQDH 177 Query: 190 RGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G + +++LA ++PLVATN+ ++ D E D+L+ + V DR R Sbjct: 178 -GLPEQKPVNEGLIKLASRLDIPLVATNDVHYVERADAEVQDLLLCIQTGKSVGDPDRLR 236 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D YLK+ EM +F D P+AL TVEIA RC L LP F E Sbjct: 237 FGSDQFYLKSALEMARLFPDHPDALRATVEIASRCEVKLSFGEYHLPEFPVPE----GHT 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR AG + R + +RL +EL VI RM + YFLIV D I + Sbjct: 293 PASYLRELCYAGAKKRYGDPL------PPEVEERLAYELQVIERMGYPPYFLIVWDVIHF 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++N I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R+S+PD D DFC + Sbjct: 347 ARRNGIMVGPGRGSAAGSLVAYCLGITNIDPLKYGLLFERFLNPERVSLPDIDTDFCFEM 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD+V+ YV +YG +RVAQI TF L A+AA+RD GRAL M Y++VDR+ +L+P +P Sbjct: 407 RDKVLEYVVRRYGADRVAQIATFAQLSARAAIRDAGRALGMSYAEVDRVARLVPGEPGMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 V+ +A+ + +E + SV +LL+++ KLEG+ RHASTHAAG+VI PL +LVP++ Sbjct: 467 VA-RALEESPELKELYEKEASVKKLLDVAAKLEGIPRHASTHAAGVVITPEPLIRLVPLH 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R + TQF + +E+ GL+K D LGL+TLT+++ +L + +RGVK+DL IP DD Sbjct: 526 R-MPDGTVATQFTKEGVEELGLLKMDLLGLRTLTVIRDTLRHVNRRGVKLDLEKIPLDDP 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664 T+ LL T+G+FQLESSGMR L +QP C ED+IALV+LYRPGP+ + +V + R Sbjct: 585 ATFELLCRGDTIGVFQLESSGMRALLRSLQPSCFEDLIALVALYRPGPLGSGMVDDFIKR 644 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G I HP ++P+L+ET GVI+YQEQVMQIA L+G+SL EAD+LRRAMGKK EE Sbjct: 645 KHGLLPIEYPHPWLEPILRETYGVIVYQEQVMQIASRLAGFSLGEADLLRRAMGKKKPEE 704 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + + RF+ G+ + G+ + +A IF+ + FA YGFNKSH+AAYA+++YQTA++K +YP Sbjct: 705 LAALRSRFVKGSVERGVDERLAEEIFDRMEYFAGYGFNKSHSAAYALVAYQTAYLKANYP 764 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIK 843 VE++AA +T D EK+ + ++ R+ I+I PP +N DF D I + LAA+K Sbjct: 765 VEYMAALLTSVRDRTEKVALYVEECRRLGIKIFPPDINESERDFSPTPDGGIRFGLAAVK 824 Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG I++A + PF DFC+RV + LNR+VLESL AGA G++R ++L Sbjct: 825 NVGEGAVEAILQARREGGPFRDFADFCARVGGRALNRKVLESLAKAGAFASLGHTRKEIL 884 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS-------VRFENE 955 +S+D K A + + + F L KF+ N +R E E Sbjct: 885 ESIDEGLKIANRAKAKKQQGIQICLFQNMEDFGGGYRL-KFNRPNGEEFPRRELLRMEKE 943 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 +LG Y SGHPL Y+ +LR + + +++ M+V ++ +TR+G + Sbjct: 944 --LLGLYISGHPLAEYRDLLRLLTDVQVADLAEMEEDAEVKVGGMIVGMKRLRTRRGEPM 1001 Query: 1016 GWVTFSEPAKEYEANFFP 1033 V + EA FP Sbjct: 1002 AAVYLEDLTGVVEAVLFP 1019 >gi|91782537|ref|YP_557743.1| DNA polymerase III subunit alpha [Burkholderia xenovorans LB400] gi|91686491|gb|ABE29691.1| DNA polymerase III, alpha subunit [Burkholderia xenovorans LB400] Length = 1193 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1028 (40%), Positives = 616/1028 (59%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++++ A D Q A+A+TD N F + F ++A G++ Sbjct: 7 PRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC + I D+ + ++ ++LLV GY L EL+S+ L +Q + Sbjct: 67 PIAGCDVWITNPDDREKPSR----------LLLLVKDRRGYLNLCELLSKASLTNQYRGR 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL+ EGL+ L+G G I A + + A++ L + K+F Y+ +QR Sbjct: 117 AEIEAGWLESGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNALHWAKVFPGGFYIEVQR 176 Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 G + Y + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ R Sbjct: 177 CGQPGGEHYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRS 235 Query: 247 -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+ L++ P LP F + + Sbjct: 236 KRFTPEQYFRTQEEMAALFADIPSALTNSVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + + GLE RL Q + Y +RL+FE I +M F GYFLIVAD Sbjct: 294 --DDYLVHLSKEGLEKRLEQLYPDEAERAAQRATYYERLEFECGTIIKMGFPGYFLIVAD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 412 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LLE++Q++EGL R+ HA G++I L+ Sbjct: 472 PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 532 FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSL 591 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPGP+D I Sbjct: 592 AQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 652 PSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM + +E F GA+KNG++ A IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 712 KKKAEEMAQHRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832 +K H+P EF+AA+M+L MD+ +K+K +D + ++PP VN F+ V + Sbjct: 772 LKAHHPAEFMAANMSLAMDDTDKVKILFEDCLVNKMAVLPPDVNLSAYRFEPVAEPDGKR 831 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A + PF + DFC+RVD + +NRR +E+L+ AGA Sbjct: 832 SRTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAF 891 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN-- 947 D +R QL+ S+ + A+ N A + G F D + V+ Sbjct: 892 DSLHANRAQLIASVSLAMEAAEQASAN---------ALQAGLFDMGDAPSQGHELVDEPE 942 Query: 948 --SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + + E+ LGFY SGH D YK +R+ + + ++ G + +A ++ S Sbjct: 943 WPEKKKLQEEKAALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAGVIASL 998 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 999 RTQMTQRG 1006 >gi|33593326|ref|NP_880970.1| DNA polymerase III subunit alpha [Bordetella pertussis Tohama I] gi|33572682|emb|CAE42605.1| DNA polymerase III alpha subunit [Bordetella pertussis Tohama I] Length = 1163 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1007 (40%), Positives = 601/1007 (59%), Gaps = 54/1007 (5%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + P FVHL+VHS +S+ +G + +++++ ++A QPA+A+TD +N+F ++F + Sbjct: 1 MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AG++P+ G + + D+ + PF ++LLV +GY L EL++R + Sbjct: 61 GARGAGVKPVAGSDVWLTNDDDRE------KPF----RLLLLVRNHQGYLNLCELLTRSF 110 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L +Q K + WLQ G EGLI+L+G G + +A ++ A + +LF Sbjct: 111 LENQYKGRAEVRREWLQ--GQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPG 168 Query: 181 RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Y+ LQR G + Y ++ ++LA LP+VAT+ FL ++++AH+ + +A Sbjct: 169 SYYIELQRAGFDGDETYTQA-AMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGE 227 Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 +++ R R T D YL + EM F+D+P AL NTVEIARRC+ L + P LP F Sbjct: 228 ILANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPT 287 Query: 298 KE---CDD--IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIA 349 + DD +Q EE GLE RL + Y +RL +E I Sbjct: 288 PDGVTLDDYLVQLSEE---------GLEKRLQFLFPDEAERNAKRDQYYERLRWECKTII 338 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLN Sbjct: 339 QMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLN 398 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY Sbjct: 399 PERVSMPDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPY 458 Query: 470 SQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 D L KLIP +PA P +L+ + D+ F++ + V L+++++ LEGL R H Sbjct: 459 LFCDALSKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMH 518 Query: 529 AAGIVIGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 A G++I L+ P+Y + + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ Sbjct: 519 AGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVR 578 Query: 588 FLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 F+ Q D+ + DD Y +L T +FQLES GM++ L+ ++P EDII Sbjct: 579 FVRQFNADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDII 638 Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 A+++LYRPGP+++ +V + NRK+G+ + HP ++ L+ T GVI+YQEQVM I+Q++ Sbjct: 639 AMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQII 698 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 GYSL AD+LRRAMGKK EEM K +E F GA + G +AV +F+L+ KFA YGFN Sbjct: 699 GGYSLGGADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFN 758 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSH+AAYA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ F +DA+ ++++PP VN Sbjct: 759 KSHSAAYALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVN 818 Query: 823 TPCVDFK-VGDNR---------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 F+ V D + Y L A+KG G I+ A + PF +L DFC R Sbjct: 819 ASGYRFEPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRR 878 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V +NRR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + Sbjct: 879 VSKHAVNRRTIEALIKAGAFDTIEPNRAAMLVSVGTAMEAAE--QAARSANQSSLFGDDS 936 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 G L K + N E+ LG+YFSGH D ++ +R++ Sbjct: 937 GDVVAG-ELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRI 982 >gi|225875019|ref|YP_002756478.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC 51196] gi|225792178|gb|ACO32268.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC 51196] Length = 1173 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1061 (40%), Positives = 623/1061 (58%), Gaps = 54/1061 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA + ++ +A+ Q ++AITD N++ A+ F + A GI+PI Sbjct: 4 FTHLHLHTDYSLLDGACDVEKLVGHVASIGQTSVAITDHGNIYGAVHFFEAAKKKGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+L I +++ + QG +++L + EGY+ L+ + S L ++ R Sbjct: 64 LGCELYICQKEDHRADPQGDD----YNHLLVLAESEEGYRNLVRITSEASLHGFYRKP-R 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I +L E GLI +G +G + ++ Q A ++ +FG ++ +Q Sbjct: 119 ISKKYLAEHAA-GLIGFSGCLAGEFCQNLMADNYQAARATAAQYQDIFGRGNFFLEIQ-D 176 Query: 190 RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 +G + ++ + + +L ++PLVATN+S +L E+D+ AHDVL+ V + + R + Sbjct: 177 QGLELEKKIHADMFRLEKDLDIPLVATNDSHYLCEDDHHAHDVLLCVQTAGSIHDPKRFK 236 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------IEKE 299 D Y+K+ +EM +F PE + T++ A RC+ L P F I+ Sbjct: 237 FDSDQFYVKSAAEMERLFPHAPEVVSRTMQFAERCNLKLNKVDNPFPEFAVPPGHTIDSY 296 Query: 300 CDDIQKEEENELRNKAVAGLEVR-LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + + +E + + A+ L+ R + + I+ DY RL+ E+ +I +MKFSGYFL Sbjct: 297 FEHVCREGFKKRLDTAIRHLQDRGILRSPIS------DYEARLEREIGIIKQMKFSGYFL 350 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI++AK ++IPVGPGRGS AGS+ Y + ITDIDPL+ LLFERFLNP+R+SMPD Sbjct: 351 IVWDFIRYAKDHDIPVGPGRGSAAGSLVGYVMEITDIDPLQNVLLFERFLNPERVSMPDI 410 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC +RR EVI YV KYG E+VAQIITF ++ AKAA++DVGRAL MPY VDR+ K+ Sbjct: 411 DIDFCMNRRGEVIEYVTRKYGREQVAQIITFNTMAAKAAIKDVGRALDMPYGDVDRIAKM 470 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + QA+ D + +EA + + L++ +++LEGL R A HAAG+VI RP Sbjct: 471 IPATIGVTID-QALTDSPQLQEAYEGNTQIRELIDTAKRLEGLVRGAGVHAAGVVIAPRP 529 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 L+ LVP+ R ++D VT ++MK +EK GL+K DFLGL TLT++ L + + RG VD Sbjct: 530 LTDLVPLSRS-KNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKMIRKNRGETVD 588 Query: 598 LSLIPFDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 ++ +P DD ETY + + T G+FQ ES GMR L +P C+ED+ AL +LYRPGPI Sbjct: 589 MAKVPLDDQETYERVFHRALTSGVFQFESGGMRDVLRRYKPTCVEDLTALNALYRPGPIQ 648 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 ++ + RK G+ K+ P ++ +LKET GVI+YQEQVMQIA +L+GYSL EAD+LR Sbjct: 649 GGMIDDFIERKWGRRKVEYELPPLETILKETLGVIVYQEQVMQIANVLAGYSLGEADLLR 708 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++RF+SGA + K V IF+L+ +FA YGFNKSH+AAYA+++Y Sbjct: 709 RAMGKKNPEEMAKQRDRFVSGALEREFPKDKIVKIFDLMEQFAGYGFNKSHSAAYALLAY 768 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TAW+KTHYPVEF+AA +T E+ E + K+ Q+ R+ I + PP V DF Sbjct: 769 HTAWLKTHYPVEFMAALLTSEISKPENVVKYIQECREIEIPVEPPDVLFSDADFTPHGKS 828 Query: 835 IYYSLAAIKGVGTTTARHIME-----ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I + L AIK VG I++ A+ K F + +FC +VD + +N+RV+ESL+ AG Sbjct: 829 IRFGLTAIKNVGRNAIDSILDARGKLAAEGKSFQNFWEFCEKVDLRLMNKRVIESLIKAG 888 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSV 945 ALD FG R QL+ S+D + AQ +++ +F + S L Sbjct: 889 ALDSFG-RRAQLMASVDKAIERAQKAQRDEAAGQSGLFGLFDADAPASASPADDLPNVPD 947 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GI----KGYEESVATIRG-------N 993 ++R ++E+ VLGF+ SGHPLD Y LR + GI E A G N Sbjct: 948 WEEALRLQSEKEVLGFFVSGHPLDRYAEKLRNLPGIIDTATALEMKPAPPTGRRGQSNEN 1007 Query: 994 NIRLAAMVVS-KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I +A M+V K K R G + + + + FP Sbjct: 1008 EIAIAGMIVGLKVAKSKRSGDLYAQASLEDATGKIDLICFP 1048 >gi|330825578|ref|YP_004388881.1| DNA polymerase III subunit alpha [Alicycliphilus denitrificans K601] gi|329310950|gb|AEB85365.1| DNA polymerase III, alpha subunit [Alicycliphilus denitrificans K601] Length = 1182 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1004 (40%), Positives = 584/1004 (58%), Gaps = 52/1004 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ + A D QPA+A+TD NNLF A++F ++ G++PI Sbjct: 2 FVHLRLHTEFSVVDGTTRIDEAVKAAAKDGQPALAVTDLNNLFGAVKFYKEGRGKGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ + G P +VLLV +GY L EL++R + + K Sbjct: 62 VGAEVCLE-------GDAGAPP----SRMVLLVQNRQGYLNLSELLTRAWTRNVVKNLPL 110 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 WL E+ EGLI+L G +GP+ +A A L +F R Y+ +QR Sbjct: 111 CTWDWLAEL-NEGLIVLAGAQAGPVGQALMKGDDDGAAAVALRLAGIFPHRFYIEIQRAG 169 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D + VQLA +LP+VAT+ F + + YEAH+ + +A +++ R R Sbjct: 170 RADDEAHVTTAVQLAARLQLPVVATHPVQFATADGYEAHEARVCIAEGEILANPRRVRRF 229 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ +EM ++F+D+P A+ NT+EIA+RC+ L + P LP F I E Sbjct: 230 TREQYFKSGAEMQALFADVPSAIANTLEIAKRCNLTLVLGKPQLPDFPTPGGMAI----E 285 Query: 309 NELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R + GL+ RL + Y +RL+FEL I +M F GYFLIV DFIQ Sbjct: 286 EYFRVASYDGLKERLLHLFPDEAERERQRLRYEERLEFELGTILKMGFPGYFLIVGDFIQ 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 346 WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483 RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 406 NRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465 Query: 484 ----AHPVSLQAIADDSRFR--------EARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 A+P + D + + E + V ++E++Q+LEG+ R+ HA G Sbjct: 466 TYTLAYPPEPKKEGDKNNYALELEPMLYERVRKEEDVRTIIEMAQQLEGMTRNIGMHAGG 525 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + DF+ Sbjct: 526 VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRA 585 Query: 592 RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R + +P DD TY L T +FQ ES GM+ L+ +P +ED+IAL + Sbjct: 586 RHKGQENFAFENVPLDDAPTYRLFADGMTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 646 LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM + + F GA++ GIS+ A +F+L+ KFA YGFNKSHAAA Sbjct: 706 GADMLRRAMGKKKPEEMAEHRLIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVD 827 Y++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + F I PP +N Sbjct: 766 YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGITFEPPDINRGNYR 825 Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKK 876 F+ V D I Y L A+KG G I+ A + PF SL DFC RVD + Sbjct: 826 FEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGQGVGPQGGTRGPFKSLFDFCVRVDRSR 885 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENIFAHEKGTF 934 +N+R +E+L+ AGA D +R L+ S+D + AQ N+ + + G+ Sbjct: 886 INKRTVEALIKAGAFDALHLNRAALVASIDRAFDFANAQLANANQGGLFDMMGDDAIGSS 945 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + L + + R E+ +GFY SGH D + +R+ Sbjct: 946 TQEPDLVEATPWGIKERLMQEKTAVGFYLSGHLFDEVQQEVRRF 989 >gi|293604441|ref|ZP_06686848.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter piechaudii ATCC 43553] gi|292817318|gb|EFF76392.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter piechaudii ATCC 43553] Length = 1163 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1008 (39%), Positives = 605/1008 (60%), Gaps = 56/1008 (5%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + FVHL+VHS +S+++G + + +++ ++A QPA+A+TD +NLF ++F + Sbjct: 1 MSEAVTNPTPFVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRM 119 A AG++PI GC + + D+ P+ P ++LLV +GY L EL+S+ Sbjct: 61 GARGAGVKPIAGCDVWLSNDDD-----------PSKPFRLLLLVRNHQGYLNLCELLSKA 109 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 +L +QGK I WLQ G +GLI L+GG G + +A ++ A + LF Sbjct: 110 FLTNQGKGRAEIRREWLQ--GQQGLIALSGGRMGDVGQALDAGNAVSALALARQWAHLFP 167 Query: 180 DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 Y+ LQR G + Y ++ ++LA LP+VAT+ FL E +++AH+ + +A Sbjct: 168 GSYYIELQRAGMDGDEAYTQA-AMRLAGEAGLPVVATHPVQFLDEYEFQAHEARVCIAEG 226 Query: 238 TVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 +++ R R T + YL + EM F+D+P AL NTVEIA+RC+ L + P LP F Sbjct: 227 EILANPRRVRRFTKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFP 286 Query: 297 EKE---CDD--IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVI 348 + DD +Q EE GLE R+A + + Y +RL +E I Sbjct: 287 TPDGVTLDDYLVQLSEE---------GLEKRMAFLFPNEAEREAKREQYYERLRWECKTI 337 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F GYFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFL Sbjct: 338 IQMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFL 397 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPDFDIDFCQD R+ VI YV+ KYG V+QI TFG+L AKA +RD GR L MP Sbjct: 398 NPERVSMPDFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMP 457 Query: 469 YSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 Y D L KLIP +P P SL+ + D+ F++ + V L+++++ LEGL R+ Sbjct: 458 YMFCDGLSKLIPFNPMDPWSLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGM 517 Query: 528 HAAGIVIGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA G++I L+ P+Y + + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ Sbjct: 518 HAGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAV 577 Query: 587 DFLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++ Q D+ + DD Y +L T +FQLES GM++ L+ ++P+ EDI Sbjct: 578 RYVRQFNEDKRDFDVMALELDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDI 637 Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 IA+++LYRPGP+++ +V + NRK+G+ + H ++ LK T GVI+YQEQVM I+Q+ Sbjct: 638 IAMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHNDLEGTLKSTYGVIVYQEQVMLISQI 697 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 + GYSL AD+LRRAMGKK EEM K +E F GA + G +AV +F+L+ KFA YGF Sbjct: 698 IGGYSLGGADLLRRAMGKKKPEEMAKHRELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGF 757 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSH+AAYA+ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+ ++++PP V Sbjct: 758 NKSHSAAYALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDV 817 Query: 822 NTPCVDFKVGDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 N F+ ++ + Y L A+KG G I+ A + PF +L DFC Sbjct: 818 NFSGYRFEPVKDKYTEKGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFLNLFDFCR 877 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 RV + +NRR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + Sbjct: 878 RVGKQAVNRRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAE--QAARSANQASLFGDD 935 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 G L K + + + E+ LG+Y+SGH D ++ +R++ Sbjct: 936 SGDVVAG-ELAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRRI 982 >gi|302392623|ref|YP_003828443.1| DNA polymerase III catalytic subunit, DnaE type [Acetohalobium arabaticum DSM 5501] gi|302204700|gb|ADL13378.1| DNA polymerase III catalytic subunit, DnaE type [Acetohalobium arabaticum DSM 5501] Length = 1129 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1041 (39%), Positives = 633/1041 (60%), Gaps = 46/1041 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL H+ YSLL+GA + ++ + A PA+AITD N++ A+EF + A AGI+P Sbjct: 3 GFVHLHCHTEYSLLDGAARIGELVTQAADYGMPALAITDHGNMYGAVEFYKAAKDAGIKP 62 Query: 70 IIGCQLDIDMQDNLKMT-NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG ++ + + N+ +P+ +VLL +GY+ L++LVS+ YL + Sbjct: 63 IIGSEVYVAPESRFNQKHNRADSPY----HLVLLAKNNQGYRNLLKLVSKGYL-EGFYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQ 187 +I L L++ EGLI L+G +G I R Q ++ + T++ +FG+ Y+ LQ Sbjct: 118 PQIDLELLRKY-NEGLICLSGCLAGRIARGLLNEQQQQVKEMISTYQDIFGENDFYLELQ 176 Query: 188 RHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 +G + + +++L ++PLVATN+ +L++ED +AHDVL+ + +++ +DR Sbjct: 177 -DQGLRKEKIINHSLIELGEEMDVPLVATNDVHYLNQEDAQAHDVLLCIQTGKLLTTEDR 235 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + D YLK+ EM IFS++P+A+ENTVEIA+RC+ L LP + E + Sbjct: 236 MKFPNDEFYLKSGQEMADIFSEVPQAIENTVEIAKRCNVELDFDQTYLPYYDVPE----E 291 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 K + LR + G R G + ++RLD+EL +I M + YFLIV DFI Sbjct: 292 KNLSSYLRELCLKGARKRY-------GEVTDEVQERLDYELEIINEMGYPAYFLIVWDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AK+ I VGPGRGS AGS+ +Y L ITDIDPL L+FERFLNP R+SMPD DIDFC Sbjct: 345 EYAKEKGIMVGPGRGSAAGSLVSYVLGITDIDPLEHGLIFERFLNPQRVSMPDIDIDFCY 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RRDEVI YV KYG +RVAQIITFG++ A+A +RDVGR L + Y+QVD++ KLIP D Sbjct: 405 QRRDEVIDYVTEKYGQDRVAQIITFGTMAARAVVRDVGRVLDLSYAQVDKIAKLIPFDAD 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +A+ ++ + L++ +QKLEGL RHASTHAAG+VI L++ P Sbjct: 465 LD---EALESSQELKDLCQKKDEIKELIDYAQKLEGLPRHASTHAAGVVISKEELTEYTP 521 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + ++ + ++ TQ+ M +E GL+K DFLGL+TLT++ +L+ + + +G+K+DL IP Sbjct: 522 LQQN-KGEV-TTQYPMGDLEAIGLLKMDFLGLRTLTVINNTLEIIERTQGIKLDLDEIPL 579 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 DD +TY LL T T G+FQ+ES+ ++ + ++P ED+IAL++L RPGP+ + +V + Sbjct: 580 DDEQTYQLLQTGNTEGLFQIESNLFQRLIADLKPTRFEDLIALLALGRPGPLGSGMVDDF 639 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R++G+ ++ H ++ +L+ET GVI+YQEQVM+IA ++GYSL EAD+LRR MGKK Sbjct: 640 IKRRHGEAEVEYPHADLEEILEETYGVILYQEQVMRIANEIAGYSLGEADILRRGMGKKK 699 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E + K +++FI GA G S+ +A +F+L+ F YGFNKSH+AAYA +SY+TA++KT Sbjct: 700 PELLKKHRQKFIDGALDKGYSEELANELFDLMEYFGGYGFNKSHSAAYAFVSYRTAYLKT 759 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YPVE++AA ++ M N +K+ ++ ++ + I+++PP VN V F V +RI + L A Sbjct: 760 YYPVEYMAALLSSIMGNSDKVARYIEECNRMGIEVLPPDVNESEVRFTVVGDRIRFGLEA 819 Query: 842 IKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K VG I+ A ++ F+SL DFC +V K+N+RV+ESL+ AGA D G R Q Sbjct: 820 VKNVGQKAIEEIIRARQEEGAFESLTDFCQKVFLGKVNQRVIESLIKAGAFDSLGAYRSQ 879 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHEN----IFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +L ++++ + A ++K + N ++ + A E G ++ L + S + E+ Sbjct: 880 MLTVIEDLYEQAHKIQKEKGNGQQSFGDFLNADEFGNV--EVKLPEMSEYSHDQLLAMER 937 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNIRLAAMVVSKQQKKTRKG 1012 LG Y SGHP+D Y+ +L + ES+ I+ +R ++ S Q T+ G Sbjct: 938 EYLGLYISGHPIDKYQDLLAENRF----ESIVAIKDLADKEEVRFGGIINSINQIITKNG 993 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + ++ + + E FP Sbjct: 994 KDMAFLELEDRTGQLEVVVFP 1014 >gi|167618438|ref|ZP_02387069.1| DNA polymerase III subunit alpha [Burkholderia thailandensis Bt4] Length = 1113 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1025 (40%), Positives = 616/1025 (60%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN+ P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNRDDRDKPS--RLLLLVKNKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ +GL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RLAQ + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLEKRLAQLYPDGAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQADGKP 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGAL Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAL 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|187929482|ref|YP_001899969.1| DNA polymerase III subunit alpha [Ralstonia pickettii 12J] gi|309781742|ref|ZP_07676475.1| DNA polymerase III subunit alpha [Ralstonia sp. 5_7_47FAA] gi|187726372|gb|ACD27537.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12J] gi|308919383|gb|EFP65047.1| DNA polymerase III subunit alpha [Ralstonia sp. 5_7_47FAA] Length = 1172 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1039 (39%), Positives = 615/1039 (59%), Gaps = 52/1039 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP FVHL++HS YS+++G + L++ + A D A+A+TD N F + F ++A G+ Sbjct: 3 SPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+G ++ +TN + PT ++LLV +GY L +L++R +L +Q + Sbjct: 63 KPIVGA--------DVWITNHDERDKPT--RLLLLVRDKQGYLNLCQLLARAWLSNQHRG 112 Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 I W E G E GL+ L+G +G I + +A K + ++F Sbjct: 113 RAEIAPEWFDEPGVENAPLATGLLALSGAMAGDIGMTLANGNDALARKLATNWSRVFPGA 172 Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR H G + Y + Q V+LA +LP+VAT+ F++ +D+ AH+ +A + Sbjct: 173 FYIELQRAGHAGTEAYIQ-QAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGEL 231 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T + Y K + EM ++F+D+P AL N+V+IA+RC+ L++ P LP F Sbjct: 232 LANPRRARRFTTEQYFKTQDEMCALFADIPSALANSVQIAQRCNLKLELGKPKLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + + ++ L A GLE R+ A+ + A+ Y RL+FE I +M F Sbjct: 292 DGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVRESKRAE-YYARLEFETGTIIKMGFP 346 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S Sbjct: 347 GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVS 406 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD Sbjct: 407 MPDFDIDFCQHGRDRVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDG 466 Query: 475 LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 + KLIP P V+L+ A ++ E + V +LLE++Q++EG+ R+ HA G++ Sbjct: 467 VAKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVL 526 Query: 534 IGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFL 589 I L+ P+Y D V +Q++ +E GL+KFDFLGL TLT+L ++ + L Sbjct: 527 IAPGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRML 586 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 + S IP D + + +L T T+ +FQLES GM+ L+ +PD EDIIALV+L Sbjct: 587 DPSKADWNCSHIPLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 646 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL Sbjct: 647 YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGG 706 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM + + F +GA+K+G+S A IF+L+ KFA YGFNKSHAAAY Sbjct: 707 ADLLRRAMGKKKAEEMAEHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAY 766 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDF 828 A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K DAR N + ++PP +N F Sbjct: 767 ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTVLPPDINASQYRF 826 Query: 829 KVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 D + I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV Sbjct: 827 APTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVR 886 Query: 888 AGALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 AGA D +R QLL S L + N+ + + + + ++ E Sbjct: 887 AGAFDSLNANRAQLLASIGLAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPELVDE--PA 944 Query: 946 ENSSVRFENEQRVLGFYFSGHPLD------------VYKPILRKMGIKGYEESVATIRGN 993 + + + E++ LGFY SGH D + R++ KG Sbjct: 945 WTTKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVTDKGNGGGYGNRDAR 1004 Query: 994 NIRLAAMVVSKQQKKTRKG 1012 N +A ++V ++ + T++G Sbjct: 1005 NKTVAGVIVGQRTQMTQRG 1023 >gi|9105008|gb|AAF83017.1|AE003874_1 DNA polymerase III, alpha chain [Xylella fastidiosa 9a5c] Length = 1212 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1054 (39%), Positives = 627/1054 (59%), Gaps = 74/1054 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53 + SFVHL +H+ +SL + + + N+L + PA+A+TD NNLF Sbjct: 22 TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 81 Query: 54 SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 + ++F + A GI+PI G L I ++ TP+ + LL GY L Sbjct: 82 ALIKFYKAAETVGIKPISGADLLIAEPEH--------TPW----GMTLLCRDHAGYLNLS 129 Query: 114 ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 +L+SR +L + V + W+++ + L L G S + F + +AE++L Sbjct: 130 QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LAGQLFAKGRADLAEQQLA 187 Query: 173 TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++ +FG+ L++ L R R + +Q+A +P++A+N+ FL D+ AH+ Sbjct: 188 DWQHVFGNGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEAR 247 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 248 VCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTY 307 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 LP + + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I + Sbjct: 308 FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 363 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+ L ITD+DPL ++LLFERFLNP Sbjct: 364 MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWTLLITDLDPLPYNLLFERFLNP 423 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 424 ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 483 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522 VD + KLIPN ++L+ + + A L A+ V LL ++++LE L Sbjct: 484 LVDSIAKLIPNTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 541 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PL++ P++ + R PVTQF+ +E+ GL+KFDFLGL+T Sbjct: 542 RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 601 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632 LT++ ++ + +R + VD++ +P DD TY + + T +FQ ESSGMR+ L Sbjct: 602 LTIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDIFASGNTSAVFQFESSGMRRLL 661 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQ Sbjct: 662 KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 721 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L Sbjct: 722 EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 781 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR Sbjct: 782 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 841 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 N++++ P++N F+ + I Y L AIKGVG + I++ P+ SL +FC+ Sbjct: 842 NLKVLRPNINHSVYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLNFCT 901 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV S KLNRR LE+++ AGALD G +R ++ L + K + + + R + +F + Sbjct: 902 RVASAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNPLFGNA 961 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988 + T + ++ L + + E+ LG YFSGHP D Y+ ++++ G ++ Sbjct: 962 DPSTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1021 Query: 989 TI-----RGN----------NIRLAAMVVSKQQK 1007 I RGN N LA +VVS ++K Sbjct: 1022 RILGSQQRGNGEKRTWHPEVNTILAGLVVSVRRK 1055 >gi|77747494|ref|NP_297497.2| DNA polymerase III subunit alpha [Xylella fastidiosa 9a5c] gi|14194684|sp|Q9PGU4|DPO3A_XYLFA RecName: Full=DNA polymerase III subunit alpha Length = 1193 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1054 (39%), Positives = 627/1054 (59%), Gaps = 74/1054 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSL--------------NNILDKIAADQQPAIAITDTNNLF 53 + SFVHL +H+ +SL + + + N+L + PA+A+TD NNLF Sbjct: 3 TSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLF 62 Query: 54 SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 + ++F + A GI+PI G L I ++ TP+ + LL GY L Sbjct: 63 ALIKFYKAAETVGIKPISGADLLIAEPEH--------TPW----GMTLLCRDHAGYLNLS 110 Query: 114 ELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 +L+SR +L + V + W+++ + L L G S + F + +AE++L Sbjct: 111 QLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIGRHS-LAGQLFAKGRADLAEQQLA 168 Query: 173 TFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++ +FG+ L++ L R R + +Q+A +P++A+N+ FL D+ AH+ Sbjct: 169 DWQHVFGNGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEAR 228 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 229 VCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTY 288 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 LP + + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I + Sbjct: 289 FLPNYPVPNDETL----DSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIK 344 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+ L ITD+DPL ++LLFERFLNP Sbjct: 345 MGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWTLLITDLDPLPYNLLFERFLNP 404 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 405 ERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYG 464 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARL-----ADPSVDRLLEISQKLEGLY 522 VD + KLIPN ++L+ + + A L A+ V LL ++++LE L Sbjct: 465 LVDSIAKLIPNTLG--ITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLT 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R+A HA G+VI PL++ P++ + R PVTQF+ +E+ GL+KFDFLGL+T Sbjct: 523 RNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRT 582 Query: 579 LTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQAL 632 LT++ ++ + +R + VD++ +P DD TY + + T +FQ ESSGMR+ L Sbjct: 583 LTIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDIFASGNTSAVFQFESSGMRRLL 642 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQ Sbjct: 643 KDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQ 702 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L Sbjct: 703 EQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDL 762 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR Sbjct: 763 MEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNL 822 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 N++++ P++N F+ + I Y L AIKGVG + I++ P+ SL +FC+ Sbjct: 823 NLKVLRPNINHSVYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLNFCT 882 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 RV S KLNRR LE+++ AGALD G +R ++ L + K + + + R + +F + Sbjct: 883 RVASAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNPLFGNA 942 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVA 988 + T + ++ L + + E+ LG YFSGHP D Y+ ++++ G ++ Sbjct: 943 DPSTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALE 1002 Query: 989 TI-----RGN----------NIRLAAMVVSKQQK 1007 I RGN N LA +VVS ++K Sbjct: 1003 RILGSQQRGNGEKRTWHPEVNTILAGLVVSVRRK 1036 >gi|332178643|gb|AEE14332.1| DNA polymerase III, alpha subunit [Thermodesulfobium narugense DSM 14796] Length = 1138 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1027 (40%), Positives = 626/1027 (60%), Gaps = 51/1027 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA L++I+ K D A+A+TD N++ AL+F A I+P Sbjct: 2 SFVHLHVHSEYSLLDGASRLDDIILKAKNDNMQALALTDHGNMYGALKFYSLAKEHEIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128 +IGC++ I D K T + ++L+ EGY+ L+ LVS +L +G Sbjct: 62 LIGCEMYI-TDDMTKQTRANGDLDTYLSHLILIAKDFEGYKNLVRLVSFGFL--KGFYYK 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L L E +GLI+ + G I + N A + TFK+ FGD Y+ +Q Sbjct: 119 PRIDLKTLFEY-KKGLIVSSACMYGRIPQLILSNKKDQAVELAKTFKEQFGDDFYLEIQD 177 Query: 189 HRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G ++ ++ ++ +PL+ATN+S + ++ED E HDVL+ + V ++R Sbjct: 178 H-GLPEEKKLIPVIINMSQDLNIPLIATNDSHYTNKEDAEFHDVLLCIQTKKTVQDENRM 236 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + D Y K EM +FS +A+ENT+ +A +CS L + +P+F C + + Sbjct: 237 KFNTDSLYFKTSEEMKELFSYCKDAVENTLIVADKCSLELPIGKVTVPKF---PCPEGKS 293 Query: 306 EEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E E N L K GL R KG ++ +RL +EL++I + + GYFLIV+D+ Sbjct: 294 EREYLNLLIEK---GLNRRY------KGNITKEIEERLKYELDIIQKTGYEGYFLIVSDY 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +AK+N I VGPGRGS AGS+ AY L ITDIDPL+++LLFERFLNP+R++ PD D+DFC Sbjct: 345 INYAKENGIQVGPGRGSAAGSLVAYVLGITDIDPLKYNLLFERFLNPERVNPPDIDVDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++R +V+ Y+ +YG E VAQI TFG++ A+A +RDVGR L P S VD+L KLIPN P Sbjct: 405 IEKRAQVLNYLVKRYGQENVAQIGTFGTMNARAVVRDVGRTLGKPLSIVDKLAKLIPNKP 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +L+ + ++ ++PS+ L E S KLEGL RH+S HAAG+VI P+ L+ Sbjct: 465 GSQATLKEAEELQEVKQFLNSNPSLKELWEKSIKLEGLTRHSSVHAAGVVISPFPIYDLI 524 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ R D+PVTQ+ M+ +EK+G +K D LGL+ LT++ K+L+ + + RG+KVD+ IP Sbjct: 525 PLQRPSEGDVPVTQWPMEDVEKSGFLKMDLLGLRNLTVIGKTLELIEKTRGIKVDIEDIP 584 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 DD + Y LL TLG+FQLESSGM+Q L+ ++PD ED+IA+++LYRPGP+++ +V Sbjct: 585 LDDPKVYELLERGETLGVFQLESSGMQQLLKEVKPDKFEDLIAILALYRPGPMNSGMVEQ 644 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK+ KE +V IH ++P+L ET GV+IYQEQ+MQ+A +L+G+SL EAD+LRRAMGKK Sbjct: 645 FIRRKHKKEPVVFIHKDVEPILSETYGVMIYQEQIMQLASILAGFSLGEADLLRRAMGKK 704 Query: 721 IKEEMDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 E M QK +F+ GA G IS+ A IF+ +AKFA+YGFNKSH+A+YA+I+Y+TAW+ Sbjct: 705 KAEVMAAQKPKFVEGAINKGLISREQAEKIFDDMAKFAEYGFNKSHSASYALITYRTAWL 764 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +Y E++AA ++ + +K+ ++ ++A++F ++++ P VN +F V N+I + L Sbjct: 765 KVYYTPEYMAALLSSVSSDTDKVAEYIKEAKKFGVEVLSPDVNESGENFTVIGNKIRFGL 824 Query: 840 AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 +AIKGVG I+ +D F +L DF R SK +N+++ E+L+ AGALD R Sbjct: 825 SAIKGVGKAAIDTILANRLSDGNFKNLRDFIYRTSSKSVNKKIYENLIKAGALDNLYKDR 884 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------- 948 + LL LD + + ++ K +N E F++ E+ ++N Sbjct: 885 LNLLDQLDEVLALVK-----KSTKTDN----EHSLFNEAFDEEELYIDNDIEIIPKKDFD 935 Query: 949 -SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQ 1006 S++ E+ VLG Y SGHPL YK ++ I + S+ + +++ +V +K+Q Sbjct: 936 PSLKLAFEKEVLGLYVSGHPLKPYKFLIN--SISNFNISSLNELDTEKVKICGIVFNKKQ 993 Query: 1007 KKTRKGS 1013 + GS Sbjct: 994 VFKKDGS 1000 >gi|319944370|ref|ZP_08018644.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis ATCC 51599] gi|319742331|gb|EFV94744.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis ATCC 51599] Length = 1203 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1054 (39%), Positives = 618/1054 (58%), Gaps = 47/1054 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 + P FVHL++ S YS+++ + L+ + AD Q A+A++D +NLF ++F ++A G Sbjct: 41 EGPGFVHLRMRSEYSVVDSIVRLDEAVAAAVADGQMALALSDASNLFGWVKFYKQASGKG 100 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +QPI C D+ +TN P ++L+ + GY+RL EL+SR +L ++ K Sbjct: 101 LQPI--CAADV------WITNAENRDRPY--RLLLIAANNAGYRRLCELLSRAWLENEYK 150 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + WL T GLI L+G G + + + A + + F D Y+ + Sbjct: 151 GHAELLPEWLTAETTGGLIALSGAGGGEVGQFLLAGNHARAVEAAQHWAAAFPDAFYLEV 210 Query: 187 QRHRGYDRYRESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 QR D E++ +LA +LPLVAT+ FL EED+ AH+ + +A V++ Sbjct: 211 QR----DGTPEAESCTRATARLAVELDLPLVATHPIQFLREEDFRAHEARVCIAEGEVLA 266 Query: 242 QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R P Y + R+EM+++F+DLP AL N+VEIARRC+ L++ P LP + E Sbjct: 267 DPKRVRRFQPTQYFRTRAEMMALFADLPAALANSVEIARRCAVTLRLGNPQLPIYPTPEG 326 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I E L ++A GL RL + + A +Y RL E I +M F GYF Sbjct: 327 VSI----EEYLVHQAEDGLAKRLEKLYPDPEVRAQKAPEYEARLKRECETIIKMGFPGYF 382 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK+N +PVGPGRGSGAGS+ A++L ITD+DPL ++LLFERFLNP+R+SMPD Sbjct: 383 LIVADFIVWAKQNGVPVGPGRGSGAGSLVAFSLGITDLDPLPYALLFERFLNPERVSMPD 442 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQD R +VI YV+ KYG++ V+QI TFG++ +KA +RD GR L MPY+ D+L K Sbjct: 443 FDIDFCQDNRGKVIEYVRRKYGYDAVSQIATFGTMASKAVIRDAGRVLDMPYNFCDQLSK 502 Query: 478 LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + A P+SL +A+ + + E + V L +++ LE + R+ HA G++I Sbjct: 503 LIPIEQAKPLSLDKALKAEPQLAERLANEEEVAELFALARPLEDMTRNIGMHAGGVLIAP 562 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 L+ P+YR +D V+Q++ +E GL+KFDFLGL+ LT++ ++ ++ +R + Sbjct: 563 GKLTDFCPLYRAPGTDSVVSQYDKDDVEAVGLVKFDFLGLRNLTIIDLAVRYVNERRARE 622 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VDL + FDD Y +L T+ IFQ+ES GM++ L +QPD EDIIA+++LYR Sbjct: 623 GQEPVDLDNLGFDDQAAYQILRDGNTVAIFQVESDGMKKLLRKLQPDRFEDIIAVLALYR 682 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+ + +V + RK G++ I HP + L+ T GVI+YQEQVMQI+Q+++GY+L Sbjct: 683 PGPLGSGMVDDFILRKRGEQAIDYFHPDLKDCLEPTYGVIVYQEQVMQISQIIAGYTLGG 742 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ++ F+ GA+ G +A +F+L+ KFA+YGFNKSH AAY Sbjct: 743 ADLLRRAMGKKKAEEMAKQRKTFMEGAAAKGQDPDLASQLFDLMEKFAEYGFNKSHTAAY 802 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 AV++YQTAW+K HYP EF+AA+++ +MD+ +K++ F +DA+ +++ PP +N F+ Sbjct: 803 AVVTYQTAWLKAHYPAEFMAATLSSDMDDTDKVQIFVRDAQANQVEVQPPDINASAYRFE 862 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 R I Y L +KGVG + +++ A A PF L DFC R+D K +NRR +E+LV Sbjct: 863 PAAPRAIRYGLGGVKGVGQSAIENVVAAREAGGPFIDLFDFCERIDRKLINRRTIEALVR 922 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSV 945 AGA D R +LL ++ + A+ + + +F A GT + E Sbjct: 923 AGAFDRLDPDRARLLANVPQAMEAAEQKAREQAAGQGGLFDDAFFGGT-DEAPAREWLPA 981 Query: 946 E--NSSVRFENEQRVLGFYFSGHPLDVYKPILR---KMGIKGYEESVATIRGNN-IRLAA 999 E + R E+ LG++ +GH D + +R K I E+ V G+ + +A Sbjct: 982 ERWDDRQRLLEEKSALGYFLTGHLFDACRDEVRRFVKTRIGDLEKIVGKHFGSTPVTVAG 1041 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V TR+G + V + + E FP Sbjct: 1042 IVSGLSTAMTRRGKMV-RVMLDDGSGTEEIAVFP 1074 >gi|299533528|ref|ZP_07046905.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44] gi|298718486|gb|EFI59466.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44] Length = 1177 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1003 (40%), Positives = 583/1003 (58%), Gaps = 53/1003 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G +N ++ A D Q A+AITD NNLF ++F ++ G++P+ Sbjct: 2 FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +G ++ M + L G P PS I++LV + +GY + EL++R + + + Sbjct: 62 LGAEI---MLEGL-----GDAP----PSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQA 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 + WLQE+G EGLI+L+G +GP+ A + A + +F R Y+ LQR Sbjct: 110 QHKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRA 168 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R D V+LA LP+VAT+ + +DYEAH+ + +A ++ R R Sbjct: 169 GRADDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRK 228 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T D Y K +EM +F+D+P A+ENTVEIARRCS L++ P LP F + Sbjct: 229 FTRDQYFKTTAEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSM---- 284 Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + R+++ GLE RL A + Y +RL+FEL I +M F GYFLIV+DFI Sbjct: 285 DEFFRHESYQGLEERLVHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK N PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ Sbjct: 345 KWAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQ 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+ D + KLIPN P Sbjct: 405 QNRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPG 464 Query: 485 HPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 V+L+ AI ++ E + V L+E++Q LEG+ R+ HA Sbjct: 465 LHVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAG 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI L+ P+Y+ S V ++ +E GL+KFDFLGL TLT+L+ + +F+ Sbjct: 525 GVVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIM 584 Query: 591 QRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 +R IP DD+ TY L + T +FQ ES GM+Q L+ +P +ED+IAL Sbjct: 585 KRHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALN 644 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +LYRPGP+D I + RK+G+E + HPL++ +L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 645 ALYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSL 704 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM K + F GA+KNG+S+ A +F+L+ KFA YGFNKSHAA Sbjct: 705 GGADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAA 764 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY++++Y T W+K HY EF +MT+EMDN +K+K +DA + I P VN Sbjct: 765 AYSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVYR 824 Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKK 876 F+ V D I Y L AIKG G I+ A + PF SL DFC RVD + Sbjct: 825 FEPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSR 884 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA--QWVEKNRTNKHENIFAHEKGTF 934 +N+R +E+L+ GA D +R L+ +LD +A ++ + + G+ Sbjct: 885 INKRTVEALIKGGAFDTIDMNRASLMATLDTAFGFAATSIANADQGGLFDMMGDDALGSS 944 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + + + + E+ +GFY +GH D + +R+ Sbjct: 945 TAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRR 987 >gi|264678275|ref|YP_003278182.1| DNA polymerase III subunit alpha [Comamonas testosteroni CNB-2] gi|262208788|gb|ACY32886.1| DNA polymerase III, alpha subunit [Comamonas testosteroni CNB-2] Length = 1177 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1003 (40%), Positives = 583/1003 (58%), Gaps = 53/1003 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G +N ++ A D Q A+AITD NNLF ++F ++ G++P+ Sbjct: 2 FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +G ++ M + L G P PS I++LV + +GY + EL++R + + + Sbjct: 62 LGAEI---MLEGL-----GDAP----PSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQA 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 + WLQE+G EGLI+L+G +GP+ A + A + +F R Y+ LQR Sbjct: 110 QHKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRA 168 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R D V+LA LP+VAT+ + +DYEAH+ + +A ++ R R Sbjct: 169 GRADDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRK 228 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T D Y K +EM +F+D+P A+ENTVEIARRCS L++ P LP F + Sbjct: 229 FTRDQYFKTAAEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSM---- 284 Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + R+++ GLE RL A + Y +RL+FEL I +M F GYFLIV+DFI Sbjct: 285 DEFFRHESYQGLEERLVHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK N PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ Sbjct: 345 KWAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQ 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+ D + KLIPN P Sbjct: 405 QNRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPG 464 Query: 485 HPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 V+L+ AI ++ E + V L+E++Q LEG+ R+ HA Sbjct: 465 LHVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAG 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI L+ P+Y+ S V ++ +E GL+KFDFLGL TLT+L+ + +F+ Sbjct: 525 GVVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIM 584 Query: 591 QRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 +R IP DD+ TY L + T +FQ ES GM+Q L+ +P +ED+IAL Sbjct: 585 KRHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALN 644 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +LYRPGP+D I + RK+G+E + HPL++ +L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 645 ALYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSL 704 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM K + F GA+KNG+S+ A +F+L+ KFA YGFNKSHAA Sbjct: 705 GGADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAA 764 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY++++Y T W+K HY EF +MT+EMDN +K+K +DA + I P VN Sbjct: 765 AYSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVYR 824 Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKK 876 F+ V D I Y L AIKG G I+ A + PF SL DFC RVD + Sbjct: 825 FEPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSR 884 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA--QWVEKNRTNKHENIFAHEKGTF 934 +N+R +E+L+ GA D +R L+ +LD +A ++ + + G+ Sbjct: 885 INKRTVEALIKGGAFDTIDMNRASLMATLDTAFGFAATSIANADQGGLFDMMGDDALGSS 944 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + + + + E+ +GFY +GH D + +R+ Sbjct: 945 TAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRR 987 >gi|167814912|ref|ZP_02446592.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 91] Length = 1107 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|167918166|ref|ZP_02505257.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei BCC215] Length = 1111 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|157804147|ref|YP_001492696.1| DNA polymerase III subunit alpha [Rickettsia canadensis str. McKiel] gi|157785410|gb|ABV73911.1| DNA polymerase III subunit alpha [Rickettsia canadensis str. McKiel] Length = 1200 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1107 (37%), Positives = 630/1107 (56%), Gaps = 111/1107 (10%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ I++ + ++ AI + D+ NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKIVELASLNKMSAICLADSGNLFGSLEFALYAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I N+ I+L+ GY+ L++L S L K Sbjct: 63 PIHGVILNIQYDINI------------FAQILLIAKDEVGYKNLLKLSS----LTVTKND 106 Query: 129 VRIC--LSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 +IC +++ + EGLI L + G + + + + A +++ DR Y Sbjct: 107 RKICDHINFEDLVKYQEGLIALCCYTDGIVGKCLLARNEEQAILFARKLQEILADRFYFE 166 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + RH +++ E +++A +PLVATN LF + + AHDVL+ ++ D Sbjct: 167 IMRHDLPEEQFIEDHYIKIAAELAIPLVATNKVLFSEKSMHYAHDVLLCISAGVTKEYPD 226 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R V+ + Y K+ EM+ +FSDLP A+ENTV + RC F + P+LP F K+ Sbjct: 227 RKTVSENCYFKSPREMIELFSDLPAAIENTVNLRERCYFAAHANPPMLPNFATKDIS--- 283 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYF 357 E + +R +A GL RLA ++ + +Y RL++EL++I M F+GYF Sbjct: 284 --ETDLIRKEATEGLLARLAIKFKSENISLENQEELKTEYLSRLNYELDIICNMNFAGYF 341 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV+DFI+W+K+ I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPD Sbjct: 342 LIVSDFIKWSKQEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPD 401 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D + + Sbjct: 402 FDIDFCQERREEVINYVRSKYGYNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYITE 461 Query: 478 LIPNDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHAST 527 L+P +PV+L QA+ + A + + +L+ S LEGL+RH+ST Sbjct: 462 LVPFSAVNPVTLEQAMHEVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHSST 521 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAGIVI L +VP+Y+D SD+ + ++MK+ E AGLIKFDFLGL+TLT++ Sbjct: 522 HAAGIVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKK 581 Query: 588 FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 L +RG+ VDL+ + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL Sbjct: 582 LLKERGIDVDLNNMTFDDNKTYQMLCQGKGVGVFQFESVGMKDALRRLKPDSIHDLIALG 641 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +LYRPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L Sbjct: 642 ALYRPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKKIK+EM++Q+E F+ GA N IS + A +IF +AKFA YGFNK+HAA Sbjct: 702 GAADLLRRAMGKKIKKEMEEQEEIFVKGAVANNISASQAKSIFATVAKFAGYGFNKAHAA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ------------ 815 AY VISYQTA++K +YP EFL A + LE++N +KI F Q+A+ I+ Sbjct: 762 AYGVISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINISEGY 821 Query: 816 -----IMPPSVNT---------------------PCVDFKVGDNR--------------- 834 ++P +V D+ G+++ Sbjct: 822 FIVKSVIPQAVTCHSHEVLCHTRVGVDPEKISEMKMDDYFRGNDKEGTENDIKSCEYDKE 881 Query: 835 ---IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I ++L AIKGV + + E A PF S+ DF R+ K +N ++LE+L+ +G Sbjct: 882 VSAIIFALGAIKGVTPNFGKLVTDERKARGPFKSITDFIERLPPKSINSKLLENLIKSGC 941 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 D +R+QL S+ + YA K + + ++ + + S I ++ + +++ Sbjct: 942 FDELHDNRLQLFLSIPKLLSYATSYHKEQASNQFSLI--KVSSLSPTILIDSNYADKNTL 999 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-----SVATIRGNNIRLAAMVVSKQ 1005 F E +G + S HPL Y+ I ++ I + T R N LA ++ K Sbjct: 1000 AF-YEFEAMGLFISNHPLTQYQEIFSRLNILNTADLHNKLPYGTTRVN---LAGVIQKKD 1055 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + +G R + S+P +E + F Sbjct: 1056 SRMSVRG-RFVTLVLSDPENIFELSIF 1081 >gi|167844904|ref|ZP_02470412.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei B7210] Length = 1109 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|51473946|ref|YP_067703.1| DNA polymerase III subunit alpha [Rickettsia typhi str. Wilmington] gi|81826280|sp|Q68VX1|DPO3A_RICTY RecName: Full=DNA polymerase III subunit alpha gi|51460258|gb|AAU04221.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 1180 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1081 (38%), Positives = 623/1081 (57%), Gaps = 84/1081 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+ SSYS LE AL++ +++ + PA+ ++D NLF +LEF+ A +QPI Sbjct: 5 FIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFALYAVKKKLQPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L+I N+ I+L+ GY+ L++L S + + K Sbjct: 65 HGVILNIQYDINV------------FAQILLIAKDETGYKNLLKLSSLTFTKNDRKICDH 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L + EGLI L + G + + + A + + GDR Y + RH Sbjct: 113 INFEDLIKY-QEGLIALCCYTDGIVGKCLLARKQEHAIMFARRLQAILGDRFYFEIMRHD 171 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ E+ +Q+A +P+VATN LF + + AHDVL+ ++ DR V+ Sbjct: 172 LPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKTVS 231 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + Y K+ +EM +FSDLP A++NTV + RC F + P+LP F DI E Sbjct: 232 ENCYFKSPAEMKKLFSDLPNAIQNTVNLRERCYFAAHPNPPMLPNF---STQDIS--ETY 286 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIVAD 362 +R A GL RL A+ + +Y RL++EL++I M F+GYFLIV+D Sbjct: 287 LIRKYAKEGLLARLVTKFKAENISREHQEKLKTEYFTRLNYELDIICNMNFAGYFLIVSD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+KK+ I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDIDF Sbjct: 347 FIKWSKKHGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDIDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+RR+EVI YV +KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 407 CQERREEVINYVCSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKCADYLTELVPFS 466 Query: 483 PAHPVSL-QAIADDSRFREARLA--------DPSVDRL-LEISQKLEGLYRHASTHAAGI 532 +PVSL QAI + A D + +L L+ S LEGL+RH+STHAAGI Sbjct: 467 AVNPVSLEQAIREVPELANAAKGKGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHAAGI 526 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI L +VP+Y+D SD+ + ++MK+ E AGLIKFDFLGL+TLT++ L ++ Sbjct: 527 VIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLKEQ 586 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 G+++D + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LYRP Sbjct: 587 GIEIDFDDMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRP 646 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L AD+ Sbjct: 647 GPMENIPTYIACKHKLQQPDYLHKLLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADL 706 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAAAY VI Sbjct: 707 LRRAMGKKIKKEMEEQEEIFVKGAIANNISQSQAKSIFATVAKFAGYGFNKAHAAAYGVI 766 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830 SYQTA++K +YP EFL A + LE++N +KI F Q+A+ I+I+ P++N F V Sbjct: 767 SYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSVKS 826 Query: 831 ---------------------------------GDNRIYYSLAAIKGVGTTTARHIM-EA 856 ++ I ++L AIKGV + + E Sbjct: 827 SDTVITHNTKPLIPRLNNEIDIKDTAVKSLYYKDESTIIFALGAIKGVTPNFGKLVTDER 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA-QWV 915 A F S+ DF R+ K +N ++LE+L+ AG D +R+QL S+ + Y+ + Sbjct: 887 KARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSVPKLIAYSTSYH 946 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 ++ +N+ I + + S I + + +++ F E +G + S HPL Y+ I Sbjct: 947 QEQESNQFSLI---KVSSLSPTILVSSNYADKNTLAFY-EFESMGLFISNHPLTEYQEIF 1002 Query: 976 RKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYEANF 1031 ++ I + + N + LA ++ Q+K +R +R +VT S+P +E Sbjct: 1003 SRLNILNTRDLYNKLPNGTNQVTLAGVI---QKKDSRMSARGRFVTLVLSDPENIFELTI 1059 Query: 1032 F 1032 F Sbjct: 1060 F 1060 >gi|169831212|ref|YP_001717194.1| DNA polymerase III, alpha subunit [Candidatus Desulforudis audaxviator MP104C] gi|169638056|gb|ACA59562.1| DNA polymerase III, alpha subunit [Candidatus Desulforudis audaxviator MP104C] Length = 1075 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1053 (39%), Positives = 610/1053 (57%), Gaps = 65/1053 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+GA + +++ + A PA+AITD +F +EF + AG++P+ Sbjct: 4 FVHLHTHTEYSLLDGAARIKDLVRRAAEFGMPALAITDHGTMFGVVEFYKACRNAGVKPV 63 Query: 71 IGCQLDI------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 IGC++ + D Q + + +VLL GY+ L+ LVS + + Sbjct: 64 IGCEVYVAPRTRHDRQSGID---------DKLAHLVLLAENERGYRNLLRLVS-LSFTEG 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI L EGLI L+ +G I A + ++ LFG Y+ Sbjct: 114 FYYKPRIDREILA-THREGLIALSACLAGEIPELILAGKPDRALETAAEYRDLFGKNFYL 172 Query: 185 NLQRH---------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 LQ H RG +V + + LVATN+ ++ E E D+L+ + Sbjct: 173 ELQDHGLPGQSVVNRG--------LVDIGKRLGIELVATNDVHYVEREQAENQDILLCIQ 224 Query: 236 HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 V R R D Y K+ EM +F++LP AL NT IA RC+ L LP Sbjct: 225 TGKTVHDAGRLRFEGDQFYFKSGGEMARLFAELPAALANTRLIAERCNLTLDFETLHLPE 284 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMK 352 + + N + +A L +A+ Y + D R+RLD+EL VIA MK Sbjct: 285 Y---------RVPPNYDADTYLA----ELCHQGLARRYSPVSDDIRRRLDYELRVIAEMK 331 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 +S YFLIV DFI++A++ I VGPGRGS AGS+ AY+L IT+IDPL + LLFERFLNP+R Sbjct: 332 YSSYFLIVWDFIRFAREKGILVGPGRGSAAGSLVAYSLGITNIDPLAYGLLFERFLNPER 391 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +S+PD D DFC +RR EVI YV KYG + VAQIITFG++ A+AA+RDVGRAL +PY++V Sbjct: 392 ISLPDIDSDFCFERRGEVIDYVFEKYGRDCVAQIITFGTMAARAAVRDVGRALGLPYAEV 451 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 DR+ KLIP +P + +A+ E D +V ++LE ++ LEG+ RHAS HAAG+ Sbjct: 452 DRIAKLIPGEPGMSIE-KALERSPELAELYERDENVRKVLEAARALEGMPRHASIHAAGV 510 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 VI L+ VP+YR + TQF+M+ IE+ GL+K D LGL+TLT++ +++ + + Sbjct: 511 VIAKEKLTNYVPLYR-TSDGVVATQFSMEAIEELGLLKMDLLGLRTLTVIGDTVELIRRH 569 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 RG K+++ IP DD TY LL T G+FQLESSGMR L ++P+ ED+IALV+LYR Sbjct: 570 RGQKLEMETIPLDDPATYDLLGRGDTAGVFQLESSGMRSILRELRPEVFEDVIALVALYR 629 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+ + +V + RK+GK ++ +HP + P+LK+T GVI+YQEQVM+IA L+G+SL E Sbjct: 630 PGPLGSRMVEDFIKRKHGKTEVQYLHPKLRPILKDTYGVILYQEQVMRIASDLAGFSLGE 689 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK E + +++F+ GA+ +G+ +A IF+L+A FA YGFNKSH+AAY Sbjct: 690 ADLLRRAMGKKKPEIIAGLRDQFLEGATAHGVDPAVAGQIFDLMAYFAGYGFNKSHSAAY 749 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+I+YQTA++K +YP+E++AA +T D+ EK+ + ++ R+ I+++PP VN DF Sbjct: 750 ALIAYQTAYLKANYPIEYMAALLTSVRDSPEKVSSYVEECRRLGIEVLPPDVNESRKDFT 809 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V ++I + LA ++ VG ++E + PF SL DFCSR+D K +N+R++ESL+ A Sbjct: 810 VVGDKIRFGLAGVRNVGEAAVNAVIETRERNGPFRSLPDFCSRLDGKVVNKRMVESLIRA 869 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS--VE 946 GA G+ R QLL +D ++Q ++K + + ++F + G F + T V Sbjct: 870 GAFSSLGFRRTQLLAVMDEALSFSQRLQKEKESGQLSLFG-DWGDFGGEGTAAAAPEIVV 928 Query: 947 NSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 FE E+ +LG Y SGHPL +K LR++ E G + L + Sbjct: 929 PHLAEFERHEILAMEKEMLGLYLSGHPLQEFKDTLRRLTTVNAVEIPELNPGQQVILGGL 988 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 VV + TRKG + ++ + E FP Sbjct: 989 VVGLKTITTRKGEPMCFLNLEDLTSRAEIVIFP 1021 >gi|83720422|ref|YP_441538.1| DNA polymerase III subunit alpha [Burkholderia thailandensis E264] gi|83654247|gb|ABC38310.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia thailandensis E264] Length = 1278 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1025 (40%), Positives = 616/1025 (60%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 108 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 167 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN+ P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 168 PIAGC--------DVWITNRDDRDKPS--RLLLLVKNKRGYLNLCELLSKAWLTNQYRGR 217 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ +GL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 218 AELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYLELQR 277 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 278 YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 336 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LP F + + Sbjct: 337 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 394 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RLAQ + Y QRLDFE I +M F GYFLIVAD Sbjct: 395 --DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVAD 452 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 453 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 512 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 513 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 572 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 573 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 632 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 633 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 692 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 693 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 752 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 753 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 812 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 813 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 872 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 873 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQADGKP 932 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGAL Sbjct: 933 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAL 992 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 993 DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 1049 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 1050 LQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1105 Query: 1011 KGSRI 1015 +G + Sbjct: 1106 RGKMV 1110 >gi|167580315|ref|ZP_02373189.1| DNA polymerase III subunit alpha [Burkholderia thailandensis TXDOH] Length = 1094 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1025 (40%), Positives = 616/1025 (60%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN+ P+ ++LLV GY L +L+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNRDDRDKPS--RLLLLVKNKRGYLNLCKLLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ +GL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RLAQ + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQADGKP 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGAL Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAL 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|167718737|ref|ZP_02401973.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei DM98] Length = 1103 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|167893446|ref|ZP_02480848.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 7894] Length = 1105 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGGEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|167823354|ref|ZP_02454825.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 9] Length = 1102 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGGEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|257139773|ref|ZP_05588035.1| DNA polymerase III subunit alpha [Burkholderia thailandensis E264] Length = 1174 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1025 (40%), Positives = 616/1025 (60%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN+ P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNRDDRDKPS--RLLLLVKNKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ +GL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYLELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RLAQ + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQADGKP 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGAL Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAL 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKAALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|171057667|ref|YP_001790016.1| DNA polymerase III subunit alpha [Leptothrix cholodnii SP-6] gi|170775112|gb|ACB33251.1| DNA polymerase III, alpha subunit [Leptothrix cholodnii SP-6] Length = 1188 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1000 (41%), Positives = 595/1000 (59%), Gaps = 50/1000 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL+ H+ YS+++G L ++ I+ A D QPA+AITD NLF A++F ++A G++P Sbjct: 2 SFVHLRTHTEYSVVDGTLRIDEIVKTAAKDGQPALAITDLANLFGAIKFYKEANKRGVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + ++ + + G+ T ++LLV GY L E++SR ++ + + Sbjct: 62 IIGADIWLEPEG---IGAAGEVRPAT--RLLLLVQNEPGYLNLCEILSRAWVQNVQRNQA 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + WL E+ GLI L+GG G + ++ + A + +F R Y+ +QR Sbjct: 117 WVKWEWLDEL-NGGLIALSGGLMGCVGQSLAQGDTVRAAELARKLAAIFPRRFYLEVQRA 175 Query: 190 R--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G+D + V LA +LP+VAT+ +L+ +D++AH+ + VA ++ RPR Sbjct: 176 GLPGHDALVLA-TVPLAAQLQLPVVATHPIQYLAPDDFDAHEARVCVAEGETIANPKRPR 234 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-CDDIQK 305 D + K ++EM ++F+D+P AL NT+EIARRCS L + P LP F D Sbjct: 235 RFGRDQHFKTQAEMEALFADVPTALANTLEIARRCSLRLVLGKPQLPNFPTPTLADGSSM 294 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ R + GLE RLA + Y +RL+FEL I +M F GYFLIV+D Sbjct: 295 PMEDYFRQLSYEGLEERLALLYPKPEKRDAERARYLERLEFELTTILKMGFPGYFLIVSD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N PVGPGRGSGAGS+ AY L+ITD+DPL ++LLFERFLNP+R+SMPDFDIDF Sbjct: 355 FIRWAKANGCPVGPGRGSGAGSLVAYVLSITDLDPLHYNLLFERFLNPERVSMPDFDIDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI YV+++YG V+QI TFG++ AKAALRD+GR L M Y VD + KLIP Sbjct: 415 CQGNRDRVIDYVKDRYGRPAVSQIATFGTMAAKAALRDIGRVLGMGYGHVDSIAKLIPAP 474 Query: 483 PAHPVSLQAIADDSRFRE-----ARLADPS----------VDRLLEISQKLEGLYRHAST 527 P V+L + + + R+ ARL P V LL ++ ++EG+ R+ Sbjct: 475 PGKSVTLARVPEKAEDRDGGVIYARLEAPELEEREKNEEEVAELLSLAMRVEGMVRNIGM 534 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HA G++I ++ P+Y+ SD V+Q++ +E GL+KFDFLGL TLT+L+ + + Sbjct: 535 HAGGVLIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAKE 594 Query: 588 FLAQRGV-KVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 F+ R + D + IP DD Y L + T +FQ ES GM++ L+ +P +ED+I Sbjct: 595 FIVARHENRKDFAFETIPLDDAAVYKLFSDGLTEAVFQFESGGMQRMLKDAKPSRLEDLI 654 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 AL +LYRPGP+D I + RK+GKE + HP+++ +L ET G+++YQEQVMQ AQ+L G Sbjct: 655 ALNALYRPGPMDLIPSFVARKHGKEPVEYPHPMVEWVLSETYGIMVYQEQVMQTAQVLGG 714 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKK EEM + + F GA+ N IS+ A IF+L+ KFA YGFNKS Sbjct: 715 YSLGGADMLRRAMGKKKAEEMAEHRAIFRKGAAGNNISQDKADEIFDLMEKFAGYGFNKS 774 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 HAAAY++++Y TAW+K H+ EF AA+MT+E+D+ +K++ QDA +F +Q P VN Sbjct: 775 HAAAYSLLAYHTAWIKVHHTAEFFAANMTIELDDTDKLRVLRQDALKFGVQFESPDVNVG 834 Query: 825 CVDF-----KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878 F K G+ I Y L AIKG G I+ A + PF S+ DFC+RVD K +N Sbjct: 835 VYRFEPAPGKAGNKLIRYGLGAIKGTGQGAIEAIIAARNEGGPFRSIFDFCARVDRKSIN 894 Query: 879 RRVLESLVFAGALDCFGY----SRMQLLQSLDNIQKYA--QWVEKNRTNKHENIFAHEKG 932 +RV+E+LV AGA D R +LL S+ +YA Q +++ + + G Sbjct: 895 KRVIEALVKAGAFDKLHPKGLDGRAELLASVGLALEYAGTQAAHADQSGLFDFGGGDDHG 954 Query: 933 TFS---DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + + D + E + V+ R +E+ +G++ SGH D Sbjct: 955 SSTREPDYVAAETWDVKQ---RLSHEKIAIGYFLSGHLFD 991 >gi|167901900|ref|ZP_02489105.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei NCTC 13177] gi|167910136|ref|ZP_02497227.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 112] Length = 1104 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|225180853|ref|ZP_03734301.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1] gi|225168334|gb|EEG77137.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1] Length = 1144 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1046 (39%), Positives = 614/1046 (58%), Gaps = 44/1046 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S +FVHL VH+ YSLL+GA + N + + A PA+AITD ++ ++F + A AGI Sbjct: 3 SSNFVHLHVHTEYSLLDGASKIKNTVARAAELDMPALAITDHGVMYGVIDFYKAAKDAGI 62 Query: 68 QPIIGCQLDIDMQ-----DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 +P+IGC++ + + D+ + + Q +VLL GY L+ELVSR + Sbjct: 63 KPVIGCEVYVAPRTRHDRDSRRDSKQHH--------LVLLAQDQTGYANLMELVSRGF-- 112 Query: 123 DQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180 +G R+ LQ +GL +L+ +G I A + A K + +K+ FG + Sbjct: 113 SEGFYYKPRVDHELLQRY-NKGLTVLSACLAGEIPVALLEGRQEDARKLVSFYKETFGSE 171 Query: 181 RLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 ++ LQ H G +E ++ LA + P+V +N+ + ED AHD L+ + Sbjct: 172 NFFLELQDH-GLQEQKELSPLLIDLAKDTQTPMVVSNDLHYTHREDAHAHDALLCIQTGK 230 Query: 239 VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + ++R R T + YLK EM S++ DLPE L+NTV IA C+ LP + Sbjct: 231 TLDDENRMRFSTEEFYLKTAEEMGSLYPDLPELLDNTVHIAENCNVDFDFSTTYLPGYEV 290 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 D E + LR V G + R + H Q +RLD+EL+VIA+M + YF Sbjct: 291 PPAHD----ERSYLRELCVQGTKERYGEELPP---HVQ---ERLDYELSVIAQMGYDSYF 340 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LI DF+ +A +N I VGPGRGS AGS+ AYAL IT+IDPL++ LLFERFLNP+R++MPD Sbjct: 341 LITWDFVNYAHENGILVGPGRGSAAGSLVAYALGITNIDPLKYGLLFERFLNPERVTMPD 400 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DIDFC + R++VI YV KYG E VAQIITFG++ A+AA+RDVGR L +PY+ VDR+ K Sbjct: 401 IDIDFCYENREKVIDYVVEKYGEECVAQIITFGTMAARAAVRDVGRVLNVPYADVDRIAK 460 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 LIP + ++ + +E D + +LL++S +EGL RHASTHAAG+VI Sbjct: 461 LIPAELNISIA-DGLEKSPDLKELYDKDEKIRQLLDLSMAVEGLPRHASTHAAGVVISKD 519 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596 PL VP+ + D VTQF M +E+ GL+K DFLGL+TLT++ +++ + + GV+V Sbjct: 520 PLVNYVPLQK-AGEDGMVTQFPMGTLEELGLLKMDFLGLRTLTIMGEAVRLIKKSTGVEV 578 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL+ +P DD T+H+L+ T GIFQLES GMR L M+PD EDIIA+V+LYRPGP++ Sbjct: 579 DLNELPLDDKNTFHMLSQGDTSGIFQLESGGMRGILREMKPDVFEDIIAVVALYRPGPME 638 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + K+G I +H ++P+LKET G+++YQEQ+MQ+A ++G+SL E+D+LRRA Sbjct: 639 QIPTFIQSKHGHIPIKYLHSDLEPILKETYGIMVYQEQIMQVASAMAGFSLGESDLLRRA 698 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 +GKK E +++Q+E F++G G K +A +++L+ KFA YGFNKSHAAAYA+++YQT Sbjct: 699 IGKKKLEVLNQQRELFVNGCVAKGHKKEMANELYDLIVKFASYGFNKSHAAAYALVAYQT 758 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-I 835 A++K +YP +F+AA +T M EK+ + + +Q I ++PP VN +F V D + I Sbjct: 759 AYLKANYPTQFMAAQLTGVMGTTEKVAGYIANCKQMGISVLPPDVNLSEKNFTVTDAKVI 818 Query: 836 YYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y +AA+K VG I+ A ++ F SL DFC+RVD + N++V+ESL+ AGA DC Sbjct: 819 RYGMAAVKNVGLGAIESIIAARKEQGDFTSLRDFCARVDLRSCNKKVMESLIKAGAFDCL 878 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KITLEKFSVENS 948 G +R QLL LD AQ + K R N +F + D + L Sbjct: 879 GANRNQLLAILDETVSAAQTMHKERQNGQMCMFEVVEEDEEDCQWVNLQDDLPDIPAPLP 938 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQK 1007 R E+ LG Y +GHPL+ Y+ +L +++ N ++ +A M+ + Sbjct: 939 RERLNMEKDTLGLYITGHPLEEYENVLNIYPDLARTDTLQKAPDNKSVVIAGMINGLKPI 998 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+KG + + T + A E FP Sbjct: 999 ITKKGKPMAFFTLEDLAGGLEVVVFP 1024 >gi|240949503|ref|ZP_04753843.1| DNA polymerase III subunit alpha [Actinobacillus minor NM305] gi|240296076|gb|EER46737.1| DNA polymerase III subunit alpha [Actinobacillus minor NM305] Length = 1142 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1043 (39%), Positives = 607/1043 (58%), Gaps = 62/1043 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 ++ G + +++ AD A+A+TD N ++F ++ ++G++PIIG + + Sbjct: 1 MINGLAKVKSLVKTAVADNMVAMALTDFTNFCGLVKFYGESLSSGLKPIIGADILV---- 56 Query: 82 NLKMTNQGKTPFPT---VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC-LSWLQ 137 P P V + LL +GY + L+S Y QG + + +WL Sbjct: 57 ---------RPEPESEEVYELTLLAKNNQGYHNITLLLSMAY--QQGYVDLPLVEKAWLA 105 Query: 138 EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197 E EG+I+L+GG SG + +A + + AE +++ F + Y ++ R D R Sbjct: 106 EY-NEGIIVLSGGRSGDVGKALLKENVKEAENLTAFYQQYFPNHFYFSICRTGRADEERY 164 Query: 198 -SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLK 255 S VV A +P+VA N+ +FL E+D+EAH++ +A+ S + R + +P Y + Sbjct: 165 ISAVVPFANQKGIPIVAVNDVVFLKEDDFEAHEIRVAIHDSYTLDDPKRLKKYSPQQYFR 224 Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF----IEKECDDIQKEEENEL 311 + EM +F+DLP ALENT+EIA+RCS +++ LP F + E I+K EE Sbjct: 225 SEEEMCRLFADLPSALENTIEIAKRCSVTVRLGEYFLPNFPTGDLTTEAFLIKKSEE--- 281 Query: 312 RNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 GLE RLA + + Y +RL EL+VI +M F GYFLIV +FIQW+K Sbjct: 282 ------GLEERLAFLFPDPEERASKREVYDKRLKVELDVINQMGFPGYFLIVMEFIQWSK 335 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD Sbjct: 336 DNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRD 395 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI +V YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP DP + Sbjct: 396 RVIDHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE 455 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A A + + E +D V L+++++KLEG+ R+A HA G+VI ++ P+Y D Sbjct: 456 -KAFAAEPKLTELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCD 514 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPF 603 PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + A+ V + IP Sbjct: 515 SEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARLTAEGKEPVRIESIPL 574 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 +D +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+++ +V N Sbjct: 575 NDKKSFDLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNF 634 Query: 663 -NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +RK+GKE++ H + P+L+ T GVI+YQEQVMQIAQ L+GY+L AD+LRRA Sbjct: 635 IDRKHGKEEVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRA 694 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM Q+E F GA I +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT Sbjct: 695 MGKKKPEEMAAQREIFEKGAIDKNIDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 754 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRI 835 W+K HYP EF+AA M+ EMDN +KI + + ++PP +N+ F V + I Sbjct: 755 LWLKAHYPAEFMAAVMSSEMDNTDKIVGLYDECINMGLTVVPPDINSGKHHFSVNEKGEI 814 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y L AIKGVG I+EA + F L D +RVD KK+NRR ++L+ +G+LD Sbjct: 815 VYGLGAIKGVGEGPIDAILEARQKEGIFKDLFDLTARVDLKKINRRTFDALIMSGSLDKL 874 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-----S 949 G R L+++L++ K + K ++F G ++ + + N+ Sbjct: 875 GPHRAALMKNLEDALKASDQHTKMEALGQSDMF----GVLTETPEEVQNAYANTPKWSEQ 930 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 V + E+ LG Y SGHP+ + L E T RG + +A +V+S + T Sbjct: 931 VVLDGERATLGLYLSGHPIGRFLKELAHYAPVRLNELQPTYRGQMVTVAGIVMSYRVAVT 990 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 ++GSRIG T + + + + F Sbjct: 991 KRGSRIGIATIEDRSGKLDITLF 1013 >gi|302877644|ref|YP_003846208.1| DNA polymerase III, alpha subunit [Gallionella capsiferriformans ES-2] gi|302580433|gb|ADL54444.1| DNA polymerase III, alpha subunit [Gallionella capsiferriformans ES-2] Length = 1204 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1104 (38%), Positives = 625/1104 (56%), Gaps = 106/1104 (9%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP FVHL++HS YS+ +G ++ +D AD PA+A+TD +N ++F +K G+ Sbjct: 3 SPVFVHLRLHSEYSITDGMARIDEAVDAAIADGMPALALTDLSNFSGLVKFYKKTRGKGL 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P+ G + I TN+ P ++LL ++EGY RL L+SR YL +Q ++ Sbjct: 63 KPVAGVDVFI--------TNEADRDRPY--RLLLLCQSSEGYLRLCRLLSRAYLSNQYRE 112 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYVN 185 + W ++ GTEGLI L+G G + A S VAE R + LF DR Y+ Sbjct: 113 RAELRREWFKDEGTEGLIALSGAHLGDVGCALM--SGNVAEARRYAQGWAALFEDRYYIE 170 Query: 186 LQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR D Y ++ LA +LP+VAT+ FL+ D++AH+ + +A V++ K Sbjct: 171 VQRAGFADEAAYVDAATA-LAAGLDLPVVATHPVQFLTSADFKAHEARVCIAEGYVLNDK 229 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + T Y K ++EM +F+DLPEAL+N+VEIARRC+ L + P LP F + Sbjct: 230 RREKAFTAQQYFKTQAEMSELFADLPEALQNSVEIARRCNLTLVLGKPRLPDFPTPSGES 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ + +++ GL R+A + A+ Y +RL FE+N I +M F GYFLI Sbjct: 290 L----DDFMLSESERGLADRMAFLYPDEAERAEKFPQYHERLLFEINTIIKMGFPGYFLI 345 Query: 360 VADFIQWAKK-------NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 VADFI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPLR+ LLFERFLNP+R Sbjct: 346 VADFIRWAKAYRSDAFPNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYELLFERFLNPER 405 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+DFCQD R+ VI YV+ KYG V+QI TFG++ +KA +RDVGR ++ PY Sbjct: 406 VSMPDFDVDFCQDGRELVIDYVKQKYGAACVSQIATFGTMASKAVIRDVGRVMEFPYGLC 465 Query: 473 DRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 DRL K IP + PVSLQ + + ++ V LLE++ +LE L R+ HA G Sbjct: 466 DRLSKAIPLEGVKPVSLQKAREMEPEINAIAESEEGVPELLELAMRLEDLTRNVGMHAGG 525 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-- 589 +VI L+ P+Y V+QF+ +E GL+KFDFLGL+TLT++ ++ + Sbjct: 526 VVIAPGKLTDFCPLYCADGGASVVSQFDKDDVEAIGLVKFDFLGLRTLTIIDWAVRHIHR 585 Query: 590 --------------------AQRGVKVD------------------LSLIPFDDHETYHL 611 + G +++ + IP DD +Y L Sbjct: 586 LQARDRKGLPRTTNETTTELLREGSRIEDQTQVSTQSSVHNPQLFSIEAIPLDDKPSYDL 645 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPD EDI+ALV+L+RPGP+++ +V + +RK+G+ Sbjct: 646 LKKCNTTAVFQLESRGMKDLIKRLQPDTFEDIVALVALFRPGPLESGMVDDFVDRKHGRA 705 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 HP ++ LK T GVI+YQEQVMQI+Q++ GY+L AD+LRRAMGKK EM +Q+ Sbjct: 706 TADYFHPELEASLKPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKDPAEMARQR 765 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+SGA I K +A +F+L+ FA YGFNKSH+AAYA+++YQTA++K H+P F+A Sbjct: 766 DIFVSGALNREIDKDLATRLFDLMEMFAGYGFNKSHSAAYALVAYQTAYLKAHHPAAFMA 825 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTT 848 A+++ ++DN EK++ F D Q I I+ P VN+ F D + I Y L AIKG G Sbjct: 826 ATLSGDLDNTEKVRTFYADTLQQGITILLPDVNSSGYAFSPTDEKTISYGLGAIKGTGEA 885 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 I++A A PF L DFC RVD + +NRR +E+L+ AGA D R L+ S+D Sbjct: 886 AIASIVKARATGPFKDLFDFCRRVDKRAVNRRTIETLIRAGAFDSINDHRAALMASVDAA 945 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVR--FENEQRVLGFYFSG 965 A ++ R+ +++F + +D + +E K V S+R E+ LG Y G Sbjct: 946 LASAD--QQARSINQDSLFGEDD---ADAVLIEQKSDVPRWSLREQLAFEKVSLGIYLGG 1000 Query: 966 HPLDVYKPIL-----------------RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 HP Y+ L + G GY + RG +RLA +V + ++ Sbjct: 1001 HPYQEYEKELTNFIKVRLGDLTPAFLGKNSGSGGY----VSRRGVQVRLAGIVSGLRLQQ 1056 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 TR+G R+ +T + + + E F Sbjct: 1057 TRRG-RMAVITLDDGSAQIELTVF 1079 >gi|94501921|ref|ZP_01308431.1| DNA polymerase III, alpha subunit [Oceanobacter sp. RED65] gi|94425974|gb|EAT10972.1| DNA polymerase III, alpha subunit [Oceanobacter sp. RED65] Length = 1164 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1053 (39%), Positives = 613/1053 (58%), Gaps = 55/1053 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL+VH+ YSL++G + + ++ ADQQ A+ I+D +N+F+ ++F A GI+P Sbjct: 6 SFVHLRVHTEYSLVDGIVRVKELIKAADADQQIALTISDQSNMFALVKFYTACQATGIKP 65 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 II + I+ D++ P+ +I L+ GY+ L ELVS + +Q Sbjct: 66 IISADVFIENPDDMA------NPY----AITLIAQNDVGYRNLTELVSAGFTKNQHHDRA 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 ++ W +E +GLI L+G G I+ A + ++A RL + +LF R Y+ LQR Sbjct: 116 QLKQEWFEE-KADGLIALSGFQRGDIEEALKKDKFELAASRLDRWLELFPQRFYLELQRT 174 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247 R D + ++LA ++P+VATN+ F+ ++D++AH+ + + T++ + R Sbjct: 175 QRPNDEALLQKSIKLAADKQVPVVATNDVRFMKQDDFDAHEARVCIGEGMTLIDPRRERR 234 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + Y K + +M +F D+P A+ N+VEIA RC+ + + LP + + Sbjct: 235 YSDQQYFKTQQQMCELFEDIPSAITNSVEIATRCNVQVLLGKYFLPEYPIPDG-----LT 289 Query: 308 ENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFLIVAD 362 ENE K + GLE RL ++ R+ RLDFEL++I +M F GYFLIV D Sbjct: 290 ENEFFKKISYEGLEERLEFLIDKNDPQYEEVRKAYFDRLDFELDIIIQMGFPGYFLIVMD 349 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK ++IPVGPGRGSGAGS+ AYA ITDIDPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 350 FIQWAKDHDIPVGPGRGSGAGSLVAYAQKITDIDPLEYDLLFERFLNPERVSMPDFDIDF 409 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD VI YV + YG E V+QI+T+G++ AKA +RDV R Y D+L KLIP D Sbjct: 410 CMEKRDRVISYVADNYGREAVSQIVTYGTMAAKAVVRDVARVQGKSYGLADKLSKLIPGD 469 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A+ ++ E +D + E++QKLEG+ R HA G+VI L+ Sbjct: 470 PGMTLA-KALDEEPALGEFIDSDEEAQEIWEMAQKLEGITRQTGKHAGGVVIAPTKLTDF 528 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P + VTQF+ +E AGL+KFDFLGL+TLT++ +L+ + K + Sbjct: 529 SPTLCEEDGTGLVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALNTINDIRAKNNEEPLR 588 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD +Y LL T +FQLES GM+ + ++PD IE++IALV+L+RPGP+++ Sbjct: 589 IEEIPLDDAPSYKLLKEAKTTAVFQLESRGMKDLIRRLEPDNIEEMIALVALFRPGPLES 648 Query: 658 IVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ HP + +L+ T GVI+YQEQVMQIAQ+L+GY+L A Sbjct: 649 GMVDDFINRKHGRAEVAYPHPDYQHESLKEILEPTYGVIVYQEQVMQIAQVLAGYTLGGA 708 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+E F GA+ G +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 709 DMLRRAMGKKKPEEMAKQRETFREGAASIGNDPDLAMKIFDLVEKFAGYGFNKSHSAAYA 768 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 V+SYQT W+KTHYP F+AA +T +M N +K+ F ++ R+ + ++ P VN F V Sbjct: 769 VVSYQTLWLKTHYPAPFMAAVLTSDMQNTDKVVIFIEECREMGLDLVLPDVNESEYGFTV 828 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ I Y L A+KGVG I+ A +K PF L FC VD K+N+RVLE+LV Sbjct: 829 NDSGAIVYGLGAVKGVGEGPIEAIITARKEKGPFTDLFHFCKSVDKSKINKRVLEALVRC 888 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D G +R L S+++ K A KN ++F G ++ + + + Sbjct: 889 GAFDKIGPNRSVLFASIEDALKAADQSAKNAAAGMMDMF----GVVEEEANINPYDEYKN 944 Query: 949 SVR-------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAA 999 VR + E+ LG Y +GHP D Y+ L+ + +A I+ + ++A Sbjct: 945 KVRDWTPKQKLKGEKDTLGLYVTGHPFDEYETELKNIA----RTRLANIQADKKPQKIAG 1000 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV ++ KT++G + VT + + F Sbjct: 1001 IVVDQRVMKTKRGGNMAIVTIDDRTARMDVRLF 1033 >gi|217420148|ref|ZP_03451654.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576] gi|217397452|gb|EEC37468.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576] Length = 1234 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 64 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 123 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 124 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 173 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 174 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 233 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 234 YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 292 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 293 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 350 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 351 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 408 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 409 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 468 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 469 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 528 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 529 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 588 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 589 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 648 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 649 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 708 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 709 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 768 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 769 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 828 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 829 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 888 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 889 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 948 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 949 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 1005 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 1006 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1061 Query: 1011 KGSRI 1015 +G + Sbjct: 1062 RGKMV 1066 >gi|167737755|ref|ZP_02410529.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 14] Length = 1103 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G ++ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEVLRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|90415809|ref|ZP_01223742.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium HTCC2207] gi|90332183|gb|EAS47380.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium HTCC2207] Length = 1132 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1022 (40%), Positives = 603/1022 (59%), Gaps = 51/1022 (4%) Query: 42 PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101 PA+A+TD NN F+A++F + +GI+PI+G L + L + +G PT +VL Sbjct: 2 PAVALTDFNNFFAAVKFYKATQGSGIKPILGTDLLV-----LDESGEGS---PT--QLVL 51 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 LV GY L +L+S+ Y Q + I SWL E ++GLI L+GG SG I A Sbjct: 52 LVKDQTGYANLTKLISKAYQDGQRQGVPHIKKSWLGEF-SDGLIALSGGRSGEIGVALVS 110 Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220 N A L F LFGDR Y+ LQR R + V LA + P+VATN+ F+ Sbjct: 111 NRLDDAATALEEFTALFGDRFYLELQRTGRPEEEDYLHAAVDLAARYNCPVVATNDVRFI 170 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 S++++EAH+ + + + R R + YL++ EMV +FSD+PEALEN+VEIAR Sbjct: 171 SKDEFEAHEARVCIHEGRALDDPRRERRFSEQQYLRSPEEMVELFSDIPEALENSVEIAR 230 Query: 280 RCSFILQVHAPILPRFIEKECDDIQK----EEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335 RCS +++ LP + E I + E + L+N+ LEV A + Sbjct: 231 RCSIDIRLGEYFLPDYPIPEGMTINEFFTLESKKGLQNR----LEVLYDTSAPDFPEIQK 286 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 Y +RL+FEL +I +M+F GYFLIV DFI WAK N IPVGPGRGSGAGS+ AY+L ITD+ Sbjct: 287 RYMERLEFELKIIIQMEFPGYFLIVMDFIGWAKTNLIPVGPGRGSGAGSLVAYSLLITDL 346 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DPL + LLFERFLNP+R+SMPDFDIDFC + RD VI YV +YG + V+QI+TFG++ AK Sbjct: 347 DPLEYDLLFERFLNPERVSMPDFDIDFCMEGRDRVIAYVAEQYGRDAVSQIVTFGTMAAK 406 Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515 A +RDV R Y D+L KLIP + + +A+ + ++ D + ++ Sbjct: 407 AVVRDVARVQGKSYGLADKLSKLIPFEVGMTLE-KAVEQEETLKQFLDEDDEAGEIWGMA 465 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +LEG+ R+ HA G+VI ++ P+Y D VTQF+ +E AGL+KFDFLG Sbjct: 466 LQLEGVARNCGKHAGGVVIAPTLITDFSPIYCDETGAGVVTQFDKNDVEDAGLVKFDFLG 525 Query: 576 LKTLTLLQKSLDFL-AQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 L+TLT++ ++ + A R +++ IP DD TY L+ T +FQLES GM++ Sbjct: 526 LRTLTIIDWAVRMINADRSNIGEEPLEIDKIPLDDQPTYGLMQRAETTAVFQLESRGMKE 585 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLK 683 ++ + PD EDIIALV+L+RPGP+ + +V + NRK G+ ++ H + P L+ Sbjct: 586 LIKKLGPDRFEDIIALVALFRPGPLQSGMVDDFINRKKGRAEVSYPHSQYQHECLKPALE 645 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 T G+I+YQEQVMQIAQ + GY+L AD+LRRAMGKK +EM KQ+E F+ GA G +K Sbjct: 646 PTYGIILYQEQVMQIAQEMGGYTLGGADLLRRAMGKKNADEMAKQRELFMDGAIGKGFTK 705 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +A NIF+L+ KFA YGFNKSH+AAYA+++YQTAW+K HYP +F+AA+++ +MD +K+ Sbjct: 706 ELASNIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKQHYPAQFMAATISSDMDKTDKVV 765 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KP 861 F + R N++++PP VN F V NR+ Y L AIKG+G +I+ A + P Sbjct: 766 TFIDECRAMNLELLPPDVNGGQFHFSVDQQNRVIYGLGAIKGLGEGPVSNILAARNEGGP 825 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALD------CFGYSRMQLLQSLDNIQKYAQWV 915 F L DFC+RVD +K+N+R +E+L+ +GA D GY R +L ++D K A+ Sbjct: 826 FKDLFDFCARVDGRKVNKRAIEALIRSGAFDEVGPEGEIGYRRAVMLAAMDQAVKLAEQH 885 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVYK 972 +N ++ ++F + + I + S R E+ LG Y +GHP+D Y+ Sbjct: 886 ARNTSSGMGDLFGNSIVESASDINYTSYGAARSLSGRERLNGERDTLGLYLTGHPIDEYE 945 Query: 973 PILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 L+KM + ++ +R + ++ M+++ + K ++G ++T + + E + Sbjct: 946 EELQKM----HPNRISKLRPAKVLATVSGMIIAMRVMKNKRGENFAFITLDDKSGRLELS 1001 Query: 1031 FF 1032 F Sbjct: 1002 IF 1003 >gi|126453191|ref|YP_001065485.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 1106a] gi|242315814|ref|ZP_04814830.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b] gi|254298453|ref|ZP_04965905.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e] gi|126226833|gb|ABN90373.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106a] gi|157808232|gb|EDO85402.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e] gi|242139053|gb|EES25455.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b] Length = 1174 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGGEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|121600233|ref|YP_992382.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei SAVP1] gi|121229043|gb|ABM51561.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei SAVP1] Length = 1686 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 516 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 575 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 576 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 625 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 626 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 685 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 686 YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 744 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 745 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 802 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 803 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 860 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 861 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 920 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 921 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 980 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 981 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 1040 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 1041 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 1100 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 1101 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 1160 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 1161 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 1220 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 1221 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 1280 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGD 832 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N P + Sbjct: 1281 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNDRFEPVAEADGKR 1340 Query: 833 NR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +R I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 1341 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 1400 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 1401 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 1457 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 1458 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1513 Query: 1011 KGSRI 1015 +G + Sbjct: 1514 RGKMV 1518 >gi|53718752|ref|YP_107738.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei K96243] gi|237811495|ref|YP_002895946.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei MSHR346] gi|254181269|ref|ZP_04887866.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655] gi|254195140|ref|ZP_04901569.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13] gi|254261192|ref|ZP_04952246.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a] gi|52209166|emb|CAH35110.1| putative DNA polymerase III alpha subunit [Burkholderia pseudomallei K96243] gi|169651888|gb|EDS84581.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13] gi|184211807|gb|EDU08850.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655] gi|237506197|gb|ACQ98515.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei MSHR346] gi|254219881|gb|EET09265.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a] Length = 1174 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDD 302 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + DD Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDD 292 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +K + L A+ +G Y QRLDFE I +M F GYFLIVAD Sbjct: 293 YLVQLSQEGLDKRLVQLYPDEAEREAQRG----KYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|134281214|ref|ZP_01767923.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305] gi|226195389|ref|ZP_03790978.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pakistan 9] gi|134247520|gb|EBA47605.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305] gi|225932591|gb|EEH28589.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pakistan 9] Length = 1234 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 64 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 123 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 124 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 173 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 174 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 233 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 234 YGQPGGEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 292 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 293 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 350 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 351 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 408 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 409 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 468 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 469 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 528 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 529 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 588 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 589 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 648 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 649 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 708 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 709 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 768 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 769 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 828 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 829 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 888 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 889 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 948 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 949 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 1005 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 1006 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1061 Query: 1011 KGSRI 1015 +G + Sbjct: 1062 RGKMV 1066 >gi|119505681|ref|ZP_01627751.1| DNA polymerase III subunit alpha [marine gamma proteobacterium HTCC2080] gi|119458493|gb|EAW39598.1| DNA polymerase III subunit alpha [marine gamma proteobacterium HTCC2080] Length = 1153 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1024 (40%), Positives = 602/1024 (58%), Gaps = 45/1024 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +SL++G + + ++ ++AA PA+A+TD N + ++ + A AG++ I Sbjct: 4 FVHLRLHTEFSLVDGLVRIPKLMGEVAAQGMPAVAVTDATNFYGLIKAYKAAQRAGLKLI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G L ++ D+ P P I LL +GYQ L L+S+ + Q S R Sbjct: 64 VGVDLWVEDADDRD------RPKP----ISLLAMNEQGYQNLTLLISKAWREGQYHGSPR 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR--LLTFKKLFGDRLYVNLQR 188 I WL + EG++ L+ G G + N+ V E R L + F +R Y+ + R Sbjct: 114 IERDWL-DAHAEGVLALSAGCQGEFGQ--LLNNGHVEEARASLKRWMATFPERFYIEVHR 170 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 G + + + V+LA E P+VATN+ FL+ ++EAH+ + + + + RP Sbjct: 171 TGRIGEEDFLHA-AVELAAEMECPIVATNDVRFLNTSEFEAHEARVCIGYGRTLDDPRRP 229 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + YL+ EM +FSDLPE+L NTVEIARRCS + + P LP F + I Sbjct: 230 REYSEQQYLRTPEEMAELFSDLPESLANTVEIARRCSVTIPLGEPSLPDFPVPDGTTI-- 287 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E+ L + GL RL Q + +Y+QRLDFEL VI M F GYFL+V DFI+ Sbjct: 288 --EDFLSQLSHDGLSRRLEQLQLTDPDTLSEYKQRLDFELGVINEMGFPGYFLVVMDFIR 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 W K+ IPVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP R+SMPDFD+DFC D Sbjct: 346 WGKQQGIPVGPGRGSGAGSLVAYVLEITDLDPLAYDLLFERFLNPQRVSMPDFDVDFCMD 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV + YG E V+QIITFG++ AKA +RDV R PY D++ KLIP + Sbjct: 406 RRDEVIEYVADTYGREAVSQIITFGTMAAKAVVRDVARVQDKPYGLADKMSKLIPFEVG- 464 Query: 486 PVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 ++L+ A+ + + D S + +++ +LEG+ R+ HA G+VI L+ P Sbjct: 465 -ITLEKAVEQEEALAQLLKEDGSAQEIWDMAIQLEGVTRNVGKHAGGVVIAPSRLTDFSP 523 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG----VKVDLS 599 +Y D VTQ++ +E+AGL+KFDFLGL+TLT++ ++ + + RG K+D+S Sbjct: 524 LYCDEAGGGLVTQYDKNDVEEAGLVKFDFLGLRTLTIIDWAVAMINKARGHEQPEKLDIS 583 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD + LL + T +FQLES GM+ ++ +QPD EDIIALV+L+RPGP+ + + Sbjct: 584 EIPLDDSRVFTLLKSAETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGM 643 Query: 660 VYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 V N NRK+G+E + H + P+L+ T G+I+YQEQVMQIAQ L+GY+L AD+ Sbjct: 644 VDNFINRKHGREALAYPDASYQHSSLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADL 703 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM KQ+ F GASK GI +A+ IF+L+ KFA YGFNKSH+AAYA++ Sbjct: 704 LRRAMGKKKPEEMAKQRSVFEEGASKKGIDPNLAMKIFDLVEKFAGYGFNKSHSAAYALV 763 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-G 831 SYQTAW+KTH+P EF+AA M+ E+DN +K+ + + + + P VN F V Sbjct: 764 SYQTAWLKTHFPAEFMAAVMSSELDNTDKLLTLRDECKSMGVPLRLPGVNEGAYLFTVNA 823 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 N I Y L AIKG+G +++ A AD F L D CSR D +K+NRR LE+L+ +GA Sbjct: 824 ANEIVYGLGAIKGLGEGPVENLLAARVADGAFKDLFDLCSRTDPRKVNRRALEALIKSGA 883 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 LD FG R L +LD+ + A+ N ++F T E V ++ Sbjct: 884 LDGFGVERWIQLAALDDALRAAEQTVANDEAGMTDLFGDVAPTADGDPYAEHRGVRPWTL 943 Query: 951 R--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E+ +G + SGHP+ Y+ +RK + + +N +A ++V + K Sbjct: 944 KEILNGEKESVGSFLSGHPIQEYEAEVRKFAPRRLRDLQPD---SNTTVAGLIVDIRTIK 1000 Query: 1009 TRKG 1012 T++G Sbjct: 1001 TQRG 1004 >gi|254785234|ref|YP_003072662.1| DNA polymerase III subunit alpha [Teredinibacter turnerae T7901] gi|237687442|gb|ACR14706.1| DNA polymerase III, alpha subunit [Teredinibacter turnerae T7901] Length = 1171 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1058 (39%), Positives = 603/1058 (56%), Gaps = 58/1058 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL+V + +SL++ + + +L ++ A+ PA ITD +N F L+F + A +GI+P Sbjct: 2 NFVHLKVRTEFSLVDSIIRVKPLLQRVQAEAMPACGITDLHNFFGLLKFYRAAQGSGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G I K + P P I L GY+ + L+SR + Q Sbjct: 62 ICGADFRIH-----KAGDDDLHP----PLITLYAMNLAGYKNITALISRSFQEGQSMGEP 112 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I SWL E +EG+I L+G G I + N AE++L ++ DR Y+ LQR Sbjct: 113 YIDESWL-EPHSEGVIALSGAKFGEIGQLLVTNKLDEAEEKLQQMMGIYRDRFYLELQRT 171 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R D + V LA + P+VATN+ FL + +E H+ + + + R R Sbjct: 172 GRENDELHLHRAVGLAAKLDCPVVATNDVRFLDSDQFEVHEARVCIGEGRTLDDPRRERR 231 Query: 249 TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D Y ++ +EM +F+D+PEA+ENTVEIARRC+ + + LP + E Sbjct: 232 YSDEQYFRSTAEMCELFADIPEAIENTVEIARRCNLDILLGKYFLPEYPIPE-----GLT 286 Query: 308 ENELRNKAV-AGLEVRLAQ--GAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ENE K GL++RL + A Y + Y +RL FEL++I +M F GYFLIV D Sbjct: 287 ENEFFEKICREGLDLRLERILDTSAPDYLERRKVYDERLKFELDIIIQMGFPGYFLIVMD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK + IPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIQWAKDHKIPVGPGRGSGAGSLVAYVLKITDLDPLQYDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD+VI YV + YG + V+QIITFG++ AKA +RDV R Y D+L K+IP D Sbjct: 407 CMEDRDKVIGYVADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPPD 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 ++ +A + RE D + +++ +LEG+ R+ HA G+VI L Sbjct: 467 VGMTLT-KAYEQEEILREFLQNDGDGQEIWDMALQLEGVTRNVGKHAGGVVIAPTKLIDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 P+Y D VTQF+ +E AGL+KFDFLGL+TLT++ ++ + Q+ + +D Sbjct: 526 APLYCDDTGGGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAVTMIDQQRTRLGEPPLD 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +S IP DD T+ +L T +FQLES GM+ ++ +QPD +ED+IALV+L+RPGP+ + Sbjct: 586 ISAIPLDDPTTFDMLKKAETTAVFQLESRGMKDLIKRLQPDNLEDMIALVALFRPGPLQS 645 Query: 658 IVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + NRK+G+ ++ H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L A Sbjct: 646 GMVDDFINRKHGRAQVAYPDAKYQHTSLQPILEPTYGVIVYQEQVMQIAQVLAGYTLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DLLRRAMGKKKPEEMAKQRSIFADGAKGLGIDPDLAMKIFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+K HYP F+AA+M+ +MD +K+ F ++ R + ++PP VN F V Sbjct: 766 LVSYQTAWLKAHYPAHFMAATMSSDMDKTDKVVTFIEECRTMKLNLLPPDVNRGEFQFTV 825 Query: 831 G-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y L AIKG+G I+EA PF L DFC+RVD ++LN+R LE+LV +G Sbjct: 826 DEDANIIYGLGAIKGLGEGPVESILEARKTGPFKDLFDFCARVDGRRLNKRALEALVRSG 885 Query: 890 ALDCFG------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-------EKGTFSD 936 ALD G Y R + ++ K A+ N ++F + + D Sbjct: 886 ALDNLGPGKDIDYDRAVMHIAIAEAVKAAEQKSANANAGISDLFGEVVPVSEDRQSVYQD 945 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NN 994 + ++S++ R E+ LG Y +GHP+D Y L + ++ N Sbjct: 946 FHRVRRWSMKE---RLNGEKETLGLYLTGHPIDEYDKELSNF----VSSRIFHLKAEKNK 998 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +VV+ + KT++G + +VT + E F Sbjct: 999 QTVAGLVVAFRVMKTKRGDNMAFVTLDDRTGRIEVAVF 1036 >gi|126440764|ref|YP_001058246.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 668] gi|126220257|gb|ABN83763.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 668] Length = 1274 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 104 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 163 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 164 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 213 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 214 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 273 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 274 YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 332 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 333 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 390 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 391 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 448 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 449 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 508 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 509 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 568 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 569 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 628 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 629 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 688 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 689 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 748 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 749 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 808 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 809 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 868 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 869 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 928 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 929 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 988 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 989 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 1045 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 1046 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1101 Query: 1011 KGSRI 1015 +G + Sbjct: 1102 RGKMV 1106 >gi|53725488|ref|YP_103508.1| DNA polymerase III subunit alpha [Burkholderia mallei ATCC 23344] gi|67640628|ref|ZP_00439428.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4] gi|124383354|ref|YP_001026814.1| DNA polymerase III subunit alpha [Burkholderia mallei NCTC 10229] gi|126449054|ref|YP_001079902.1| DNA polymerase III subunit alpha [Burkholderia mallei NCTC 10247] gi|167000890|ref|ZP_02266691.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20] gi|254175785|ref|ZP_04882445.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399] gi|254202193|ref|ZP_04908556.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH] gi|254207520|ref|ZP_04913870.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU] gi|254359936|ref|ZP_04976206.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280] gi|52428911|gb|AAU49504.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei ATCC 23344] gi|124291374|gb|ABN00643.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10229] gi|126241924|gb|ABO05017.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10247] gi|147746440|gb|EDK53517.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH] gi|147751414|gb|EDK58481.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU] gi|148029176|gb|EDK87081.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280] gi|160696829|gb|EDP86799.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399] gi|238521386|gb|EEP84838.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4] gi|243063197|gb|EES45383.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20] Length = 1174 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGD 832 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N P + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNDRFEPVAEADGKR 828 Query: 833 NR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +R I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|187923250|ref|YP_001894892.1| DNA polymerase III subunit alpha [Burkholderia phytofirmans PsJN] gi|187714444|gb|ACD15668.1| DNA polymerase III, alpha subunit [Burkholderia phytofirmans PsJN] Length = 1192 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1028 (39%), Positives = 615/1028 (59%), Gaps = 52/1028 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A G++ Sbjct: 7 PRFVHLRVHSEFSIADGIVRLDDIVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ L +Q + Sbjct: 67 PIAGC--------DVWITNPDDRDKPS--RLLLLVKDRRGYLNLCELLSKASLTNQYRGR 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL+ EGL+ L+G G + A + + A++ L + K+F Y+ LQR Sbjct: 117 AEVEAGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIELQR 176 Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 G ++Y + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ R Sbjct: 177 SGQPGGEQYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRS 235 Query: 247 -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + Y + + EM ++F+D+P AL N+VEIA+RC+ L++ P LP F + + Sbjct: 236 KRFTSEQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q A + + Y RL+FE I +M F GYFLIVAD Sbjct: 294 --DDYLVQLSKEGLEKRLEQLYPDAAEREAQRETYYARLEFECGTIIKMGFPGYFLIVAD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 412 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LLE++Q++EGL R+ HA G++I L+ Sbjct: 472 PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 532 FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSL 591 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPGP+D I Sbjct: 592 GQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+E + P ++ +L+ET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 652 PSFCARKHGREVVEYPDPRVESVLRETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM + +E F GA+KNG++ A IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 712 KKKAEEMAEHRELFRQGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832 +K H+P EF+AA+M+L MD+ +K+K +D + ++PP VN F+ V + Sbjct: 772 LKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAEPDGKR 831 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A + PF + DFC+RVD + +NRR +E+L+ AGA Sbjct: 832 SKTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAF 891 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVEN-- 947 D +R QL+ S+ + A+ N A + G F D + V+ Sbjct: 892 DTLHANRAQLIASVSLAMEAAEQASAN---------ALQAGLFDMGDAPSQGHELVDEPE 942 Query: 948 --SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSK 1004 + + E+ LGFY SGH D YK +R+ + + ++ G + +A ++ S Sbjct: 943 WPEKKKLQEEKAALGFYLSGHLFDAYKNEVRRF----VRQKIGELKEGRDKLVAGVIASL 998 Query: 1005 QQKKTRKG 1012 + + T++G Sbjct: 999 RTQMTQRG 1006 >gi|121611396|ref|YP_999203.1| DNA polymerase III subunit alpha [Verminephrobacter eiseniae EF01-2] gi|121556036|gb|ABM60185.1| DNA polymerase III, alpha subunit [Verminephrobacter eiseniae EF01-2] Length = 1186 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1004 (40%), Positives = 582/1004 (57%), Gaps = 53/1004 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ + AAD QPA+AITD NNLF A++F + + G++PI Sbjct: 2 FVHLRMHTEFSVVDGTNRIDEVARAAAADGQPALAITDLNNLFGAVKFYKATRSQGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +G ++ + P P+ +++LV + +GY L EL++R + K Sbjct: 62 VGAEIFL------------PGPAGAAPARLIVLVQSHQGYLNLSELLTRAWTRGVVKNQA 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 +WL+E+ EGLI+L G +GP+ +A A + L +F R ++ LQR Sbjct: 110 LCHWAWLEEL-AEGLIVLAGAQAGPVGQALLKGDDAGAAETALRLAGMFPHRFFIELQRA 168 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R D + LA LP+VAT+ F +DYEAH+ + +A +++ R R Sbjct: 169 GRADDESHVAAAAALAARLRLPVVATHPVQFARADDYEAHEARICIAEGDILANPRRQRK 228 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T D Y K+ +EM +F+DLP AL NTVEIARRC+ L + P LP F I Sbjct: 229 FTRDQYFKSAAEMQRLFADLPSALANTVEIARRCNLTLVLGKPQLPDFPTPGGMPI---- 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFI 364 E R +V GLE RL Q Y RL+FE+ I M F+GYFLIV DFI Sbjct: 285 EAYFRVASVNGLEQRLLCLYPEPAQREQQRPRYLARLEFEIGTIVEMGFAGYFLIVGDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 QWA+ N PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 345 QWARNNGCPVGPGRGSGAGSLVAYAMGITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQ 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RD VI YV++KYG + V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 405 ANRDRVIDYVKDKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGIAKLVPAKPG 464 Query: 485 ------HPVSLQAIADDSRF---REARLAD-----PSVDRLLEISQKLEGLYRHASTHAA 530 +P + + D + + E +LA+ V ++E++QKLEGL R+ HA Sbjct: 465 ISYTLQYPPNPKKEGDKNHYVLELEPQLAERMRKEEDVRTVIEMAQKLEGLTRNIGMHAG 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G++I L+ P+Y+ S V+Q++ +E GL+KFDFLGL TLT+LQ + +F+ Sbjct: 525 GVLIAPGKLTDFCPLYQPPGSASAVSQYDKDDVEAIGLVKFDFLGLATLTILQLAREFIV 584 Query: 591 QR-GVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 R + D S I DD TY L + T +FQ ES GM+ L+ +P + D+IAL Sbjct: 585 GRHKGQQDFSYDAIALDDGPTYRLFSEGQTEAVFQFESRGMQGMLKEARPSRLGDLIALN 644 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +LYRPGP+D I + NRKNGKE ++ HPL++ +L ET G+++YQEQVMQ AQLL GYSL Sbjct: 645 ALYRPGPMDLIPSFINRKNGKEPVLYPHPLVESVLAETYGIMVYQEQVMQTAQLLGGYSL 704 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM + + F GA++ G+S+ A +F+L+ KFA YGFNKSHAA Sbjct: 705 GGADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGLSQEKADEVFDLMEKFAGYGFNKSHAA 764 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY++++Y T W+K HY EF A+MT+EMD+ +K+K +DAR+ + PP VN Sbjct: 765 AYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDARKMGLAFEPPDVNRGGHR 824 Query: 828 FKVGDNRIY-YSLAAIKGVGTTTARHIMEA----------SADKPFDSLEDFCSRVDSKK 876 F+ N+I Y L AIKG G I+ A + PF SL DFC RVD + Sbjct: 825 FEPVSNKIIRYGLGAIKGTGQQAIEAIVAAREGRGEGPRGACSGPFKSLFDFCVRVDRAR 884 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY--AQWVEKNRTNKHENIFAHEKGTF 934 LN+R +E+L+ AGA D R L+ S+D + A N+ + + + A G+ Sbjct: 885 LNKRTVEALIKAGAFDSIERHRAALVASIDRAFDFAAATLANVNQGSLFDMMGADAHGSS 944 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + L + + E+ +GFY SGH D +R+ Sbjct: 945 QQEPELVGAAPWGIREQLMQEKTAVGFYLSGHLFDEVAAEVRRF 988 >gi|167835967|ref|ZP_02462850.1| DNA polymerase III subunit alpha [Burkholderia thailandensis MSMB43] Length = 1095 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1025 (40%), Positives = 614/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + +WL+ GL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDANWLEGDLAAGLLALSGAQQGDIGLALAAGNEAAARRHAQRWSQVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 H G + Y + Q V +A LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 HGQPGAEAYIQ-QAVTIAAELMLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +MV++F+DLP AL NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTEQFFRTQDDMVALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLEKRLVQLYPDEAEREAQRDKYSQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM + +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAQHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D I ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCDVNGIAVLPPDINQSHYRFEPVAQADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGAL Sbjct: 829 SCTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRIVNRRTIEALIRAGAL 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKSALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|121998235|ref|YP_001003022.1| DNA polymerase III subunit alpha [Halorhodospira halophila SL1] gi|121589640|gb|ABM62220.1| DNA polymerase III, alpha subunit [Halorhodospira halophila SL1] Length = 1183 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/1070 (39%), Positives = 609/1070 (56%), Gaps = 58/1070 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 E P FVHL++HS +SL++G + +N + PA+AITD +NLF ++F + A AA Sbjct: 3 EDPPPFVHLRLHSEFSLVDGIVRINEAVSAAREAGMPAVAITDQSNLFGMVKFYRAALAA 62 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G++PIIG D+ + D+ + + LL GY+ L L+SR Y Sbjct: 63 GVKPIIGG--DVWLADDTVEFGYAR--------LTLLCRDRGGYRALSRLLSRAYREGAC 112 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 I WLQ GL+ L+GG+ G I +A A + ++ FG D Y+ Sbjct: 113 GDIPVIRREWLQ-ADAGGLLALSGGAQGDIGQALLRGDEATARRYAEEHRRTFGEDGFYL 171 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R R D V LA +LP+VATN+ F+ EDY+AH+V + + + Sbjct: 172 ELHRLGRPGDERHLHAAVALAADEDLPVVATNDVRFMRPEDYDAHEVRVCIHQGRTLDDP 231 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +RPR T Y + ++M FSDLPEALE +V IA RCS L++ LP F E Sbjct: 232 NRPRHYTEQQYFADAADMAERFSDLPEALETSVRIAERCSVDLELDTNYLPDFPVPEGHT 291 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFL 358 + + LR ++ GL RL Q +A+ A + Y +RLD EL VI +M F GYFL Sbjct: 292 VA----SFLRAESERGLTQRLEQRGLAEDEDADEVEATYHRRLDHELAVIEQMGFPGYFL 347 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFI+WA+ N+IPVGPGRGSGAGS+ AYAL IT++DPLR+ LLFERFLNP+R+SMPDF Sbjct: 348 IVADFIRWARDNHIPVGPGRGSGAGSLVAYALGITNLDPLRYDLLFERFLNPERVSMPDF 407 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC +RRDEVI YV ++YG E+V+QI T G++ A+A +RDVGR + +DR+ KL Sbjct: 408 DVDFCMERRDEVIEYVSDRYGAEKVSQIATHGTMAARAVVRDVGRVYGHAFGYMDRIAKL 467 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + + +A+ + R D ++ L++ ++ LEG+ R+ HA G+VI Sbjct: 468 IPFEIGMTLD-KALEQEEDLRAEYDNDENIRELIDTARSLEGMARNVGKHAGGVVIAPTD 526 Query: 539 LSQLVPMYRDV--RSDLP----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----F 588 L+ P+YRD R D T F+ +E GL+KFDFLGL+TLT++ ++ Sbjct: 527 LTDFSPLYRDPEEREDAEAWKVATHFDKDDVEAVGLVKFDFLGLRTLTIIDWTVQAVNRI 586 Query: 589 LAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 L QRG + +D+ IP DD T+ LL T +FQLES GM++ ++ +QPD EDI+ALV Sbjct: 587 LEQRGERALDIDGIPLDDSATFDLLKRCATTAVFQLESRGMKELIKRLQPDSFEDIVALV 646 Query: 648 SLYRPGPIDNIVV--YNNRKNGKEKIVSI------HPLIDPMLKETQGVIIYQEQVMQIA 699 +L+RPGP+ + +V + RK+G+ + HP + P+L+ T GVI+YQEQV +IA Sbjct: 647 ALFRPGPLQSGMVDDFVERKHGRSAVAGYPTRELHHPDLMPVLQPTYGVILYQEQVQRIA 706 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q+L+GYSL EAD+LRRAMGKK EEM KQ+ +F+ GA G+S+ A IF+L+ KFA Y Sbjct: 707 QVLAGYSLGEADLLRRAMGKKKPEEMAKQRAKFLEGAQARGLSEGHATGIFDLMEKFAGY 766 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA++SYQTAW+K H+P F+A+ ++ +MDN +K+ F +AR ++++PP Sbjct: 767 GFNKSHSAAYALLSYQTAWLKCHFPAPFMASVLSSDMDNTDKVVIFLDEARAMGLEVLPP 826 Query: 820 SVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKL 877 VN F+ D R I Y L AIKGVG + ++ E A PF + D C RVD+ + Sbjct: 827 DVNRSDKPFRAVDERTIVYGLGAIKGVGESALDAVLGERDAHGPFGDVFDLCRRVDTGRA 886 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--- 934 NRRVLE+L +G+LD +R + + A+ V +++ ++F Sbjct: 887 NRRVLEALCRSGSLDSLVPNRATGMAQIPAALAAAEQVTRDQAAGQTDLFGGPAEAVIAP 946 Query: 935 -SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-------- 985 + + R E+ LG + +GHP+D Y+ L + + Sbjct: 947 GGAGEEVAEEPEWPEEERLAAEKATLGLFLTGHPIDRYEHELPYLATDRLQRLASGAGGS 1006 Query: 986 --SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 RG ++ A +VV+ + + T G R+ +T + E FP Sbjct: 1007 GGDGNGGRGRSVTAAGLVVALRVRSTSTGGRLATLTLDDRTGRIEVVLFP 1056 >gi|291280374|ref|YP_003497209.1| DNA polymerase III subunit alpha [Deferribacter desulfuricans SSM1] gi|290755076|dbj|BAI81453.1| DNA polymerase III, alpha subunit [Deferribacter desulfuricans SSM1] Length = 1160 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1052 (40%), Positives = 635/1052 (60%), Gaps = 48/1052 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL +H+ YSLL+GA+ ++ ++ K+ + A+AITD ++ ++F +A A I Sbjct: 2 SKDFVHLHLHTQYSLLDGAIHISELMQKLKENGSKAVAITDHGTMYGIVDFYTQALANDI 61 Query: 68 QPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 +PIIGC++ + D + N + + +VLL T G + L LVS+ ++ + Sbjct: 62 KPIIGCEVYVAPDSRFNKNYDKKEDKNY----HLVLLAQTNTGLKNLQYLVSKAHI-EGF 116 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 RI L + ++GLI L+ +G R + A+K L + ++ G D ++ Sbjct: 117 YYKPRIDKELLAK-HSKGLIALSACLAGEPARKLLNEGYEAAKKAALEYYEIMGKDNYFL 175 Query: 185 NLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 +Q + G + ++++++ +PLVATN+ FL+ EDY +H VLM + + ++ Sbjct: 176 EIQDN-GINEQNLVNKKLIEISKETGIPLVATNDCHFLNREDYYSHQVLMCIQYQQTLND 234 Query: 243 KDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +R + + Y+K+ EM F+++ EAL NTV+IA RC+ + LP + E Sbjct: 235 PNRRDSHSSELYVKSPKEMWKSFNEVEEALINTVKIAERCNVSMTFGELHLPVYDVPEGY 294 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ L + + GL RLA+ + H++ Y +RL++EL +I + GY+LIV Sbjct: 295 TLK----TYLEHISKEGLHKRLAKVPLE--LHSK-YYERLEYELKIIHEKGYDGYYLIVW 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +A+KN IPVGPGRGSGAGS+ AYA+ ITDIDP+++ LLFERFLNP+R SMPDFDID Sbjct: 348 DFINYARKNKIPVGPGRGSGAGSLVAYAVGITDIDPIKYKLLFERFLNPERKSMPDFDID 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR+EVI YV+NKYGH+RVAQIITFG L A+ +RDVGR L++P VD++ K+IP Sbjct: 408 FCMNRREEVIDYVRNKYGHDRVAQIITFGKLLARGVIRDVGRVLEIPLKTVDKIAKMIPE 467 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P + +A+ DS + + LL+ + KLEGL R+A HAAG+VI D+PL + Sbjct: 468 KPGLTLK-KALEMDSELKPNIESIEKGKELLDHALKLEGLLRNAGMHAAGVVIADKPLVE 526 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 VP+ + ++D VTQF +EK GL+KFDFLGLK LT++ + + + + D+S Sbjct: 527 YVPLCKG-QNDEVVTQFEKDTLEKVGLVKFDFLGLKNLTVIDYASKLIRETKDSDFDISS 585 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +T+ LL++ T G+FQLESSGM+ L+ ++P EDIIALV+LYRPGPI + ++ Sbjct: 586 IPLDDKKTFELLSSGETTGVFQLESSGMKNLLKKLKPTTFEDIIALVALYRPGPIGSGML 645 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G +++ P ++ +LKET G+I+YQEQVMQIAQ+++GYSL AD+LRRAMG Sbjct: 646 DDFVKRKHGLQEVTYPLPELEEILKETYGIIVYQEQVMQIAQIVAGYSLGSADLLRRAMG 705 Query: 719 KKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 KK EEM K +E F I GA K G + IA IF+L+AKFA+YGFNKSH+AAYA Sbjct: 706 KKKPEEMAKHREIFLYGDEKLGIEGAVKRGFDEKIASEIFDLMAKFAEYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTA++K HYPVE++AA ++ E++ +K+ F + ++ I+++ P +N DF + Sbjct: 766 MVSYQTAYLKAHYPVEYMAALLSNELEKGDKVVGFIDECKKMGIKVLKPDINESFRDFII 825 Query: 831 GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I + L AIK VG I+ E + + S+ D C RVD + +NR+VLESL+ AG Sbjct: 826 TGDSIRFGLGAIKNVGFGAIDEIIKERKTNGKYKSIYDLCKRVDLRTVNRKVLESLIKAG 885 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFS-- 944 ALD FG +R Q LQ LD+ + Q K + K+E I E K D+I E + Sbjct: 886 ALDSFGKNRRQHLQVLDDAIESGQ---KEQQLKNEGIITIEDILKENGIDEIEEEHYPDV 942 Query: 945 ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 EN ++FE E VLGFY + HPL Y IL + K + T N I + +V Sbjct: 943 EEMPENELLKFEKE--VLGFYLTNHPLVNYSNIL-DIFTKRSSDIETTDENNLIMVGGIV 999 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + T+ R+ +VT + + FP Sbjct: 1000 KGVKNYITKTNERMAFVTLEDLEGTMDVVVFP 1031 >gi|299066194|emb|CBJ37378.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CMR15] Length = 1173 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/991 (41%), Positives = 599/991 (60%), Gaps = 38/991 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP FVHL++HS YS+++G + L+ + AAD A+A+TD N F + F ++A G+ Sbjct: 3 SPRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P++G ++ +TN + P+ ++LLV +GY L L++R +L +Q + Sbjct: 63 KPVVGA--------DVWITNHDERDKPS--RLLLLVRNKQGYLNLCMLLARAWLSNQHRG 112 Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 I W E G E GL+ L+G G I A + +A K + ++F Sbjct: 113 RAEIAPEWFGEPGVEAAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPAS 172 Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR + G + Y + Q V+LA + +LP+VAT+ F++ +++ AH+ + +A + Sbjct: 173 FYIELQRAGNAGTEAYVQ-QAVKLAASMQLPVVATHPVQFMTPDEFTAHEARVCIAEGDL 231 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D Y K + EM ++F+D+P AL NTV+IA+RC+ L++ P LP F Sbjct: 232 LANPRRTRRFTTDQYFKTQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L A GLE R L + +Y RL+FE I +M F G Sbjct: 292 DGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPG 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467 Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+L+ A ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527 Query: 535 GDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLA 590 L+ P+Y D V +Q++ +E GL+KFDFLGL TLT+L ++ + L Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + S IP D + +L T T+ +FQLES GM+ L+ +PD EDIIALV+LY Sbjct: 588 PSKADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL A Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM + +E F GA+K+G+S A IF+L+ KFA YGFNKSHAAAYA Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFK 829 +++Y TAW+K H+P EF+AA+M+L MD+ +K+K DAR N + ++PP +N F Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNALAVLPPDINASQYRFT 827 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D + I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV A Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887 Query: 889 GALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 GA D +R QLL S L + N+ + + + + + ++ E + Sbjct: 888 GAFDSLNANRAQLLVSIGLAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLDE--APW 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 ++ + + E++ LGFY SGH D + +R+ Sbjct: 946 STKRKLQEEKQALGFYLSGHLFDECRDEVRR 976 >gi|330984024|gb|EGH82127.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1201 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/998 (41%), Positives = 585/998 (58%), Gaps = 67/998 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSL + + + ++ K QPAIAI+DT+N+F+ ++ A A G++P Sbjct: 2 SFVHLSVHSEYSLHDSLIRVKPLMSKAKEFNQPAIAISDTSNMFATIKAYNGAMAMGVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGK 126 II ++ I KTP +I L +GYQ L EL+SR Y D Sbjct: 62 IIAAEVQI------------KTPRLPASTITLYCMNNDGYQALCELISRGYNEAPRDDQN 109 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 V I L WL + T+ LI L+GG G I R N + + L +K LFGDRL++ L Sbjct: 110 HPV-IPLEWL-DGQTDNLIALSGGREGEIGRLMMSNRKALVAEALSDYKLLFGDRLFIEL 167 Query: 187 QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--- 241 QR H DRY + + V LA H+LP+VATN S FL D++ H+V +A+A V Sbjct: 168 QRIGHPADDRYVK-EAVSLAIEHKLPVVATNPSRFLDPADFQTHEVRIAIAQGRSVRALR 226 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + P T Y K+ EM +FSD+P+A++NTV IA CS L + LP F + Sbjct: 227 EDLNPPCTQHQYFKSSEEMTELFSDIPQAIQNTVRIAALCSVDLTLGKSFLPSFPAPD-- 284 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGY 356 + E + L + GLE RLA + K D Y +RL FEL VI +M F GY Sbjct: 285 --KMSEADYLEKTSYEGLEERLAY--LFKDKDEIDAKRPTYVERLKFELGVINQMGFPGY 340 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+WAK N+IPVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMP Sbjct: 341 FLIVADFIKWAKANDIPVGPGRGSGAGSLVAYSLGITDLDPLPYDLLFERFLNPERVSMP 400 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC D+RD+VIRYV + YGH+ V+QIIT+G++ AK +RDV RAL PY +++ Sbjct: 401 DFDVDFCMDKRDQVIRYVADAYGHDAVSQIITYGTMAAKMVVRDVARALGYPYRLGNQIS 460 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 +LIP +P ++L+ D + L D V ++ + KLEG+ R HA G++I Sbjct: 461 QLIPKEP--DITLEKALDRVPTLKVMLDTDHDVKNIMLHALKLEGITRQVGKHAGGVLIS 518 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-- 593 L+Q P Y D V+Q++ +EKAGL+KFDFLGL+ LT++ +L + R Sbjct: 519 PGALTQFTPTYCDPDGGSLVSQYDKDDVEKAGLVKFDFLGLRNLTIIDHALKSINGRREK 578 Query: 594 ---VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 K+D++ I D TY ++ T +FQLESSGM+ ++ +QPDC ED+IALV+L+ Sbjct: 579 EGLAKIDINGIDLTDKLTYEMIQRCETTAVFQLESSGMKNLIKRIQPDCFEDLIALVALF 638 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLS 703 RPGP+ + +V + +RK+G+ ++ HP + P+L+ T G+I+YQEQVMQIAQ+++ Sbjct: 639 RPGPLQSGMVDDFIDRKHGRAELSYPHPNYQYAGLKPVLEPTYGIILYQEQVMQIAQVMA 698 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GY+L AD+LRRAMGKK EEM KQ+ F+ G KNGI +A NIF+L+ KFA YGFNK Sbjct: 699 GYTLGGADMLRRAMGKKKPEEMAKQRGGFVEGCGKNGIDAHLAGNIFDLVEKFAGYGFNK 758 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAYA++++QTAW+K HYP +F+AA ++ +MDN +K+ +F + R ++I P N Sbjct: 759 SHSAAYALVAFQTAWLKAHYPADFMAAVLSSDMDNTDKVVRFIHECRNMGVEIQTPHANH 818 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882 F + I Y L AIKG G + ++ ++ + A + + DF R LN+ + Sbjct: 819 SQWHFTSHNGVILYGLGAIKGFGESASKAMLADRKAGGSYQDIIDFLRR---NSLNKSSI 875 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK----I 938 E+ + AG D G R +LL + + KN +G D + Sbjct: 876 EACIHAGMFDFSGLQRSELLAIYPTAASAGKQLRKNVN----------QGMLFDMDLPVV 925 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 + +V + VR E++ LG Y +GHP Y+ L+ Sbjct: 926 KRTETTVMDDDVRLAGERKHLGLYLTGHPYAKYQTRLK 963 >gi|17546924|ref|NP_520326.1| DNA polymerase III subunit alpha [Ralstonia solanacearum GMI1000] gi|17429224|emb|CAD15912.1| probable dna polymerase III (alpha chain) protein [Ralstonia solanacearum GMI1000] Length = 1173 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/991 (41%), Positives = 600/991 (60%), Gaps = 38/991 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP FVHL++HS YS+++G + L+ + AAD A+A+TD N F + F ++A G+ Sbjct: 3 SPRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+G ++ +TN + P+ ++LLV +GY L L++R +L +Q + Sbjct: 63 KPIVGA--------DVWITNHDERDKPS--RLLLLVRNKQGYLNLCMLLARAWLSNQHRG 112 Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + W E G E GL+ L+G G I A + +A K + ++F Sbjct: 113 RAEVAPEWFGEPGVEEAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPAS 172 Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR + G + Y + Q V+LA + +LP+VAT+ F++ +D+ AH+ + +A + Sbjct: 173 FYIELQRAGNAGTEAYVQ-QAVKLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGDL 231 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D Y K + EM ++F+D+P AL NT +IA+RC+ L++ P LP F Sbjct: 232 LANPRRTRRFTTDQYFKTQDEMCALFADIPSALANTAQIAQRCNLTLELGKPKLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L + A GLE R+A + +Y RL+FE I +M F G Sbjct: 292 DGMSL----DDYLVHLAKDGLEKRMAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPG 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467 Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+++ A ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 468 AKLIPFKPGKLVTIEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527 Query: 535 GDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLA 590 L+ P+Y D V +Q++ +E GL+KFDFLGL TLT+L ++ + L Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRTLD 587 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + S IP D + +L T T+ +FQLES GM+ L+ +PD EDIIALV+LY Sbjct: 588 PSRADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL A Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM + +E F GA+K+G+S A IF+L+ KFA YGFNKSHAAAYA Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFK 829 +++Y TAW+K H+P EF+AA+M+L MD+ +K+K DAR N + ++PP +N F Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLAVLPPDINASQYRFT 827 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D + I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV A Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887 Query: 889 GALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 GA D +R QLL S L + N+ + + + + + ++ E + Sbjct: 888 GAFDSLNANRAQLLVSIGLAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLDE--APW 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 ++ + + E++ LGFY SGH D + +R+ Sbjct: 946 STKRKLQEEKQALGFYLSGHLFDECRDEVRR 976 >gi|167569335|ref|ZP_02362209.1| DNA polymerase III subunit alpha [Burkholderia oklahomensis C6786] Length = 1174 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1025 (40%), Positives = 611/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + K F Y+ LQR Sbjct: 114 AELDASWLEGEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ F++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTDQFFRTQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLEKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQMLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG++ A IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHRELFREGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++ P +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLSPDINQSHYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGAL Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAL 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGEPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKSALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|121534258|ref|ZP_01666082.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1] gi|121307028|gb|EAX47946.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1] Length = 1129 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1036 (39%), Positives = 623/1036 (60%), Gaps = 37/1036 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA + +++ + PA+AITD N++ ++F ++A AAGI+P Sbjct: 2 SFVHLHVHTEYSLLDGASRIKHLVCRAKELGMPALAITDHGNMYGVIDFYKQARAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127 IIGC++ + + + T +G+ + +VLL T +GY+ LIELVSR +G Sbjct: 62 IIGCEVYVAPRSRWEKTAVEGEAYY----HLVLLAETDQGYRNLIELVSRAN--SEGFYY 115 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNL 186 R+ L+ T GLI L+G +G I + AE ++ +FG R ++ L Sbjct: 116 KPRVDKELLRTYST-GLICLSGCIAGEIPALLLKGDFEGAEALAHEYRDIFGPRNFFLEL 174 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ + +Q+ LA L LVATN+ ++ + D E HDVL+ + V R Sbjct: 175 QDHNLPEQKQVNAQLALLADKLGLGLVATNDIHYVDKGDAECHDVLLCIQTGKTVDDSGR 234 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPILPRFIEKECD 301 R + YLK+ +EM ++F P+A+ NT+ IA RC ++ +H P P D Sbjct: 235 MRFPNNEFYLKSPAEMAALFGWRPDAITNTLVIAERCQVSIEFGKLHLPEFPVPAGLTAD 294 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + LR L R G AQ +RL++EL VI +M +S YFLIV Sbjct: 295 EY-------LRRLCFERLPRRYPTGT------AQA-TERLEYELAVIQKMGYSSYFLIVW 340 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+ +A+ +IPVGPGRGS AGS+ +Y L IT+IDPL++ LLFERFLNP+R++MPD DID Sbjct: 341 DFVNFARSRDIPVGPGRGSAAGSIVSYLLGITNIDPLKYGLLFERFLNPERVTMPDIDID 400 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR ++I YV +YG + VAQIITFG++ A+AA+RDVGRAL +PY +VDR+ KLIP Sbjct: 401 FCYERRGQIIDYVAKRYGADHVAQIITFGTMAARAAVRDVGRALNLPYGEVDRIAKLIPT 460 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A+ + RE D V +LL+++ +EGL RHASTHAAG+VI L+Q Sbjct: 461 ELGTTLQ-RALEVSTELRELYETDDKVRKLLDLAMAVEGLPRHASTHAAGLVIAKEKLTQ 519 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 VP+ ++ TQ++ +E+ GL+K D LGL+TLT++ +L+ + + RG+++D+ Sbjct: 520 YVPL-QNSTEGFVTTQYDKDRVEEIGLLKMDLLGLRTLTVIGDTLELVRKSRGIRLDIDA 578 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +T LL TLG+FQ+ES+GM ++ ++P+ +D+I LV+LYRPGP+ + +V Sbjct: 579 IPLDDAKTCQLLANGETLGVFQMESAGMTNLVKELKPERFDDLIPLVALYRPGPLGSGMV 638 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + ++GK+++ HPL++P+LKET GVI+YQEQVMQIA +++G++L +AD+LRRAMG Sbjct: 639 ADFIAGRHGKKEVQYPHPLLEPILKETFGVILYQEQVMQIASVMAGFTLGQADLLRRAMG 698 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK E ++ Q++ F+ GA++ GI A NIFEL+A FADYGFNKSH+AAYA+++YQTA+ Sbjct: 699 KKKHEVLEAQRDNFMRGAAERGIDSATAANIFELMAHFADYGFNKSHSAAYALVAYQTAY 758 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYP EF+AA +T M EK+ + ++ R+ I ++PP +N +F V I + Sbjct: 759 LKAHYPQEFMAALLTSVMGANEKVGLYIEECRRLGIPVLPPDINASRENFTVDGQAIRFG 818 Query: 839 LAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 LA +K VG +I+ A + F SL DFC+RVD + +N+RV+ESL+ GA D G+ Sbjct: 819 LAGVKNVGDAAIANIIAARDSGGKFTSLVDFCTRVDMRTVNKRVIESLIKCGAFDSLGWR 878 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R QLL LD + A +++ + +F+ E +D I E+ Sbjct: 879 RSQLLAILDQAVEAAASRQRDLASGQMGLFSDETVNSADDIVPPPLEELPKEQLLAMEKE 938 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 + GFY +GHPLD Y+ L +E + G + +A ++ ++ T+ G + + Sbjct: 939 MTGFYVTGHPLDKYRDQLNNY--TKIDELMQYADGQTVCIAGLIAGAKRITTKGGEMMCF 996 Query: 1018 VTFSEPAKEYEANFFP 1033 T + + E FP Sbjct: 997 ATLEDFTNQVEVVIFP 1012 >gi|254480316|ref|ZP_05093564.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma proteobacterium HTCC2148] gi|214039878|gb|EEB80537.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma proteobacterium HTCC2148] Length = 1135 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1025 (39%), Positives = 595/1025 (58%), Gaps = 43/1025 (4%) Query: 33 LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92 + ++A PA+A+TD +N + ++ + A +AG+QPI G L + D+ P Sbjct: 1 MSRVAELGMPAVAVTDVSNFYGLVKVHKSAFSAGVQPIFGTDLRVLDADD---------P 51 Query: 93 FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152 + P + LL GY L L+SR Y Q + +WL+E EG+I L+ G+ Sbjct: 52 EKSYP-LCLLAMNQTGYHNLTLLISRSYTEGQYLGVPYVQKAWLEEC-AEGVIALSAGAR 109 Query: 153 GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPL 211 G + +A S++A R + L+ R Y+ L R R D V LA + P+ Sbjct: 110 GDVGQAIIGEKSELAVARAKYWMALYPQRFYLELHRTGREGDETHLHGAVNLAAQLQCPV 169 Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEA 270 VATN+ FL ++EAH+ + + + R R T YL++ EM +F+D+PEA Sbjct: 170 VATNDVRFLDASEFEAHEARVCIGEGRTLDDPRRARSYTEQQYLRSPEEMTELFADIPEA 229 Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ--GAI 328 L NTV+IARRC+ +L++ P LP + E + + R + GL+ RL + Sbjct: 230 LANTVQIARRCNVVLELGKPYLPDYPVPEGMTM----DEFFRQLSHDGLDARLEALFDSS 285 Query: 329 AKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 A + A+ YR+RL+FEL I +M F GYFLIV DFI+WAK+++IPVGPGRGSGAGS+ Sbjct: 286 ADDFPAKQKQYRERLEFELETIIQMGFPGYFLIVMDFIRWAKQHDIPVGPGRGSGAGSLV 345 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI YV + YG E V+QI Sbjct: 346 AYAMEITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDYVADTYGREAVSQI 405 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506 ITFG++ AKA +RDV R Y D+L KLIP + + +A+ + +E D Sbjct: 406 ITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVGMTLE-KALEQEEALKEFLAEDE 464 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 + +++++LEG+ R HA G+VI L+ P++ D VTQ++ +E A Sbjct: 465 QAQEIWDMAEQLEGVTRGVGKHAGGVVIAPSKLTDFSPLFCDESGSGLVTQYDKGDVEDA 524 Query: 567 GLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621 GL+KFDFLGL+TLT++ ++ + +D+ IP DD ++ LL + T +F Sbjct: 525 GLVKFDFLGLRTLTIIDWAVKMINTVRDTDGQAPLDIMQIPLDDQPSFTLLKSAKTTAVF 584 Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIV-----SI 674 QLESSGM+ +E +QPDC EDI+ALV+L+RPGP+ + +V N NRK+G+E++ Sbjct: 585 QLESSGMKDLIERLQPDCFEDIVALVALFRPGPLQSGMVDNFINRKHGREELSFPDAKWQ 644 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 H + P+L+ T G+I+YQEQVMQIAQ L+GY+L AD+LRRAMGKK EEM KQ+ F Sbjct: 645 HEWLKPILQPTYGIILYQEQVMQIAQELAGYTLGGADMLRRAMGKKKPEEMAKQRTIFEE 704 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 GA G+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP F+AA M+ Sbjct: 705 GAKSKGVDSELAMRIFDLVEKFAGYGFNKSHSAAYALVSYQTCWLKTHYPAPFMAAVMSS 764 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHI 853 E+DN +KI F + ++ + + P VN F V I Y L AIKG+G I Sbjct: 765 ELDNTDKIVVFVDECKRMKLSLKLPDVNEGQYMFTVNAQGDIIYGLGAIKGLGEGPVEII 824 Query: 854 MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912 + D PF L DFC+R D +K+NR+ +E+L+ +GALD G +R L+ S+++ K A Sbjct: 825 LATRETDGPFTDLFDFCARTDPRKVNRKAIEALIRSGALDSLGETRWVLMASMEDALKAA 884 Query: 913 QWVEKNRTNKHENIF-----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + NR +++F + E GT K R E+ LG Y +GHP Sbjct: 885 EQSASNRDAGIDDLFGEVVPSQENGTEDVYAGFRKVRPWTDKERLGGERDTLGLYITGHP 944 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 +D Y+ +RK K + +GN + L ++++ + T++G+ + +T + + + Sbjct: 945 IDEYQVEIRKFAPKRIVDVRPDKQGNQL-LVGLIMATRTMNTQRGT-MAVLTLDDSSAQM 1002 Query: 1028 EANFF 1032 E F Sbjct: 1003 EVTLF 1007 >gi|152980633|ref|YP_001352224.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille] gi|151280710|gb|ABR89120.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille] Length = 1152 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1038 (39%), Positives = 611/1038 (58%), Gaps = 47/1038 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP F+HL++HS YS+++G + +++++ AAD QPA+AI+D NLF ++F ++A + GI Sbjct: 3 SPQFIHLRLHSEYSIVDGLIRIDDVIQAAAADMQPALAISDLANLFGMVKFYKEARSNGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+GC ++ ++N P+ ++LLV +GY +L EL+S+ +L + + Sbjct: 63 KPIVGC--------DVWISNDNDRDKPS--RLLLLVKNKDGYLQLCELLSKAWLTNLHRG 112 Query: 128 SVRICLSWLQEI---GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL+++ G GLI+L+G G + A + AE+ + +LF Y+ Sbjct: 113 RAEIRPEWLEQVAADGKNGLIVLSGAHFGDVGIAIDNGNLGAAERCAQRWAELFPGHFYI 172 Query: 185 NLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 +QR G+ R Q LA LPLVAT+ FL E++ AH+ ++ + Sbjct: 173 EVQRAGQPNMDGHVR----QASVLAAKLGLPLVATHPVQFLGLEEFTAHEARTCISEGEI 228 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R K ++EM +F+D+P AL+N+VEIA+RC+ +L++ P LP F Sbjct: 229 LANPRRIKRFNEQQRFKTQAEMAELFADMPNALQNSVEIAKRCNLVLELGKPKLPNFPTP 288 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + I + L +A GL+ R+ A+ H + Y+ RL FE + I +M F G Sbjct: 289 DGSSI----DEFLVKEAQRGLDQRMEHLYPDPAAREKHRERYQARLKFETDTIIKMGFPG 344 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SM Sbjct: 345 YFLIVADFIKWAKNNGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSM 404 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ+ RD VI+YV+++YG + V+QI TFG++ AK A+RDVGR L Y+ D + Sbjct: 405 PDFDIDFCQEGRDRVIQYVKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGI 464 Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V++ AI ++ E + V +LL+++Q++EG+ R+ HA G++I Sbjct: 465 SKLIPFKPGKLVTISDAIKEEPLLAERLENEEEVKQLLDLAQQVEGIARNIGMHAGGVLI 524 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L +++ ++ Sbjct: 525 APGKLTDFCPLYTQGGDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDP 584 Query: 594 VKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 D +L +P +D +Y LLT T+ +FQLES GM+ L+ +PD EDIIALV+LYR Sbjct: 585 AMADFALEKLPLNDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYR 644 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D I + RK+G E+ P + +L ET G+++YQEQVMQ+AQ++ GYSL AD Sbjct: 645 PGPMDLIPDFCRRKHG-ERFEYPDPRTESILSETYGIMVYQEQVMQMAQVIGGYSLGGAD 703 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM + +E F +GASKN +S A IF+L+ KFA YGFNKSHAAAYA+ Sbjct: 704 LLRRAMGKKKAEEMAEHRELFRAGASKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYAL 763 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVN------TP 824 +SY TA++K H+P F+AA+++L MD+ +KIK +DA + ++PP +N TP Sbjct: 764 LSYHTAYLKAHHPAAFMAANLSLAMDDTDKIKILVEDAIDICGLSLLPPDINQSDYRFTP 823 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 +I Y L A+KG G ++EA ++PF L DF RVD +++NRR ++S Sbjct: 824 VGVPGKKATQIRYGLGAVKGSGKGAIDAVIEARKERPFTDLFDFAKRVDKRQINRRTIDS 883 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ AGA DCF R LL S+ + ++F + K S Sbjct: 884 LIRAGAFDCFDVDRAILLASV--AFAMECAEQAEAAANQVSLFGGDDSDLETPPEYVKVS 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + + E+ LGFY SGH + Y R+ + S+ R R A V+S Sbjct: 942 PWSDKQKLTEEKAALGFYLSGHLFNAYADEARRFA-RAKLSSLEPSR--EPRTIAGVISG 998 Query: 1005 QQKKTRKGSRIGWVTFSE 1022 + + + RI VT + Sbjct: 999 LRTQMTQRGRITIVTLDD 1016 >gi|167562082|ref|ZP_02354998.1| DNA polymerase III subunit alpha [Burkholderia oklahomensis EO147] Length = 1105 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1025 (40%), Positives = 611/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + K F Y+ LQR Sbjct: 114 AELDASWLEGEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ F++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQ-QAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTTDQFFRTQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLEKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQMLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG++ A IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHRELFREGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++ P +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLSPDINQSHYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ AGAL Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAL 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHANRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGEPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKSALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|282599926|ref|ZP_05972365.2| DNA polymerase III, alpha subunit [Providencia rustigianii DSM 4541] gi|282567163|gb|EFB72698.1| DNA polymerase III, alpha subunit [Providencia rustigianii DSM 4541] Length = 1144 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1040 (40%), Positives = 609/1040 (58%), Gaps = 54/1040 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K+A PA+AITD NL ++F A +AG++PIIG ++ + Sbjct: 1 MIDGLAKTGPLVKKVAEMGMPALAITDFTNLCGLVKFYGAAHSAGVKPIIGADFYMESE- 59 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 ++ + V + +L EGYQ L L+S Y G I WL + Sbjct: 60 --QLGDD-------VAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + + + + ++ + ++ F Y+ L R R + Sbjct: 110 EGLILLSGGRKGDVGQFLLRGNQALVDECIEFYETHFPGSYYLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 ++LA LP+VATN F+ D++AH++ +A+ + RP+ +P YL++ E Sbjct: 170 IELATLRGLPVVATNEVCFIESRDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQYLRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALEN+VEIA+RC+ +++ LP+F + E E+ L + GL Sbjct: 230 MCELFADIPEALENSVEIAKRCNVTIRLGEYFLPKFPTGDM-----ETEDYLVMCSKKGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + +Y +RLD ELNVI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLEFLFPDEKERAVKRIEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLE-KAFEVEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D++ IP +D +++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPIDIAAIPLEDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPD ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVKWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFKDGAIKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F + D C+RVD KK+NRRV+E L+ AGA D G R L+ Sbjct: 824 GVGEGPIEAIIEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDHLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---------SVRFE 953 SL++ K A ++H A +G + VE+S V E Sbjct: 884 SSLEDALKAA--------DQHAKAEAIGQGDMFGVLAEAPEQVESSYASVPKWPEQVVLE 935 Query: 954 NEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LG Y +GHP+ Y I R ++ T RG + +V+S + T++G Sbjct: 936 GERETLGLYLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRG 995 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +RIG T + + + F Sbjct: 996 NRIGICTLDDRSGRLDIMLF 1015 >gi|254190629|ref|ZP_04897136.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur 52237] gi|157938304|gb|EDO93974.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur 52237] Length = 1174 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1025 (40%), Positives = 613/1025 (59%), Gaps = 40/1025 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVKDKRGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 114 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 174 YGQPGGEAYIQ-QAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP A NTVEIA+RC+ L++ P LPRF + + Sbjct: 233 KRFTTEQFFRTQGDMAALFADLPSARANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 529 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ AGA Sbjct: 829 SRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL S+ + A+ + +F G + + L + R Sbjct: 889 DSLHENRAQLLASVPLAMEAAE--QAAANALQAGLF-DIGGVPAHQHALVDEPAWDDKRR 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y+ +R+ + + ++ G + +A ++ S + + T+ Sbjct: 946 LQEEKGALGFYLSGHLFDAYRDEVRRF----VRQKLGELKEGRDKVVAGVIASLRTQMTQ 1001 Query: 1011 KGSRI 1015 +G + Sbjct: 1002 RGKMV 1006 >gi|91788754|ref|YP_549706.1| DNA polymerase III subunit alpha [Polaromonas sp. JS666] gi|91697979|gb|ABE44808.1| DNA polymerase III, alpha subunit [Polaromonas sp. JS666] Length = 1190 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1001 (41%), Positives = 593/1001 (59%), Gaps = 33/1001 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ I+ AADQQPA+AITD +NLF ++F ++ AG++P+ Sbjct: 19 FVHLRIHTEFSVVDGTNRIDEIVQAAAADQQPALAITDLSNLFGTVKFYKEGRGAGVKPL 78 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + + GK ++LLV GY L EL++R + + + Sbjct: 79 IGADVWVQVP--------GKDAAAPAARLLLLVQNHRGYLNLSELLTRAWTRNVVRDQAV 130 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 I L WL+E+ EGLI L+G G + +A A + L LF R Y+ LQR Sbjct: 131 IKLEWLEEL-NEGLIALSGAQGGAVGQALLQGDDARALECALHLAGLFPHRFYLELQRAQ 189 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R D + VQLA +LP+VAT+ FL+ +DYEAH+ + +A ++ R R Sbjct: 190 RPDDERHVAAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCIAEGEILGNTRRVRKF 249 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ ++M +F+D+P AL NT+EIARRC+ L++ P+LP + E + ++ + Sbjct: 250 TREQYFKSAAQMTQLFADVPSALANTLEIARRCNLKLELGKPMLPDYPTPEVEGVRMPID 309 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R+ + GLE RLA + Q Y +RL+FE+N I +M F GYFLIV DFI Sbjct: 310 AYFRHASFEGLEERLAHLYPNEALRDQKRPVYVERLEFEINTILKMGFPGYFLIVGDFIN 369 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 370 WAKNNGCPVGPGRGSGAGSLVAYALRITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQS 429 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV++KYGH+ V+QI+TFG++ A+AA+RDVGR L PY D + KLIPN P Sbjct: 430 NRDRVIDYVKDKYGHDAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPGQ 489 Query: 486 PVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 V+LQ A+ + E + V LL++++KLEGL R+ HA G Sbjct: 490 AVTLQLLPAERKKNDKMVYALEAEPVLAERERKEEDVHTLLDLARKLEGLTRNVGMHAGG 549 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I L+ P+Y S V+QF+ +E GL+KFDFLGL TLT+L+ + +F+ Q Sbjct: 550 VLIAPGKLTDFCPLYLQPGSGSAVSQFDKNDVEAIGLVKFDFLGLATLTILEIAREFIIQ 609 Query: 592 RG-VKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R + D + +D Y L T +FQ ES GM++ L+ +P+ +ED+IA+ + Sbjct: 610 RHPSQKDFKFENLSLNDARVYALFAEGNTEAVFQFESIGMQRMLKDAKPNRLEDLIAMNA 669 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I Y RK GKE P + P+L+ET G+++YQEQVMQ AQ+L GYSL Sbjct: 670 LYRPGPMDLIPTYIARKQGKEVPEYPDPRVKPILEETYGIMVYQEQVMQTAQILGGYSLG 729 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK ++EM Q++ F GA NG+++ A +F+L+ KFA YGFNKSH+AA Sbjct: 730 GADMLRRAMGKKDEKEMASQRDIFRKGAGVNGLTQEKADEVFDLMEKFAGYGFNKSHSAA 789 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++Y TAW+K HY EF AA+MT+EMD+ +K+K DA++ IQ P +N F Sbjct: 790 YALLAYHTAWLKVHYTAEFFAANMTVEMDDTDKLKILFGDAQKMGIQFESPDINRGDYRF 849 Query: 829 K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886 + + + Y L A+KG G I+ A + PF SL DFC RVD KLN+R +E+L+ Sbjct: 850 EPISATAVRYGLGAVKGTGQQAIAAIVAARQEGGPFTSLYDFCVRVDRSKLNKRTVEALI 909 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 GA D +R +LL S+D ++A E N + + + L + Sbjct: 910 KGGAFDNLHLNRAELLASVDRAFEFAAATEANANQGGLFDMSDSHAASTQEPPLVEAVPF 969 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 R E+ +GFY SGH D + +R+ + E+ + Sbjct: 970 GVKARLVLEKTAIGFYLSGHLFDEVEAEVRQFAKRKIEDLI 1010 >gi|221067306|ref|ZP_03543411.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1] gi|220712329|gb|EED67697.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1] Length = 1177 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1003 (39%), Positives = 581/1003 (57%), Gaps = 53/1003 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G +N ++ A D Q A+AITD NNLF ++F ++ G++P+ Sbjct: 2 FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +G ++ ++ G P PS +++LV + +GY + EL++R + + + Sbjct: 62 LGAEIVLE--------GLGDAP----PSRVIVLVQSRQGYHNIAELLARGWTRNVVRDQA 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 + WLQE+G EGLI+L+G +GP+ A + A + +F R Y+ LQR Sbjct: 110 QHKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRA 168 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R D V+LA LP+VAT+ + +DYEAH+ + +A ++ R R Sbjct: 169 GRPDDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRK 228 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T D Y K +EM +F D+P A+ENTVEIARRCS L++ P LP F + Sbjct: 229 FTRDQYFKTAAEMEQLFCDIPSAIENTVEIARRCSLTLELGNPQLPNFPVPAGMSM---- 284 Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + R+++ GLE RL A + Y +RL+FEL I +M F GYFLIV+DFI Sbjct: 285 DEFFRHESYQGLEERLVHLYPDAAKRDAQRARYVERLEFELGTIMKMGFPGYFLIVSDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK N PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ Sbjct: 345 KWAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQ 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+ D + KLIPN P Sbjct: 405 QNRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPG 464 Query: 485 HPVSLQ--------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 V+L+ AI ++ E + V L+E++Q LEG+ R+ HA Sbjct: 465 LHVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAG 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI L+ P+Y+ S V ++ +E GL+KFDFLGL TLT+L+ + +F+ Sbjct: 525 GVVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIM 584 Query: 591 QRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 +R IP DD+ TY L + T +FQ ES GM+Q L+ +P +ED+IAL Sbjct: 585 KRHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALN 644 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +LYRPGP+D I + RK+G+E + HPL++ +L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 645 ALYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSL 704 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM K + F GA+KNG+S+ A +F+L+ KFA YGFNKSHAA Sbjct: 705 GGADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAA 764 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY++++Y T W+K HY EF +MT+EMDN +K+K +DA + I P VN Sbjct: 765 AYSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVHR 824 Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK----------PFDSLEDFCSRVDSKK 876 F+ V D I Y L AIKG G I+ A + PF SL DFC RVD + Sbjct: 825 FEPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHETGPFKSLFDFCLRVDRSR 884 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA--QWVEKNRTNKHENIFAHEKGTF 934 +N+R +E+L+ GA D +R L+ +LD +A ++ + + G+ Sbjct: 885 INKRTVEALIKGGAFDSIDMNRASLMATLDTAFGFAATSIANADQGGLFDMMGDDALGSS 944 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + + + + E+ +GFY +GH D + +R+ Sbjct: 945 TAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRR 987 >gi|296133826|ref|YP_003641073.1| DNA polymerase III, alpha subunit [Thermincola sp. JR] gi|296032404|gb|ADG83172.1| DNA polymerase III, alpha subunit [Thermincola potens JR] Length = 1146 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1039 (38%), Positives = 617/1039 (59%), Gaps = 36/1039 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + F+HL VH+ YSLL+GA + +++ A A+A+TD ++F ++F + AGI Sbjct: 2 AADFIHLHVHTEYSLLDGAARIRDLVSAAAEKGMKALAVTDHGSMFGVIDFYKACKKAGI 61 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +PI+GC++ + M D + +VLL GY+ L+ +VS Y + Sbjct: 62 KPILGCEVYVAPRSMDDREPGRDDANY------HLVLLAENETGYKNLLHIVSEAY--TR 113 Query: 125 G-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182 G R + L++ +EGLI L+ G I A S A ++ +FG Sbjct: 114 GFYYKPRTDKAALRK-HSEGLIALSACLGGEIATAIVNGQSDKARAAAREYEDIFGKGNF 172 Query: 183 YVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 ++ LQ H G + R ++V++ +PLV TN+ ++ + D E DVL+ + + Sbjct: 173 FLELQDH-GLENQRMVNMELVKIGRELNIPLVVTNDVHYVRKSDAEVQDVLLCIGTGRTM 231 Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 DR T + YLK+ EM + + PEAL NTV IA RC+ LP ++ E Sbjct: 232 EDADRMEFGTSEFYLKDAREMALLAGEYPEALANTVNIAARCNVEFDFSQNYLPDYMIPE 291 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ LR + GL+ R ++ R+RL++EL VI M F GYFLI Sbjct: 292 GHTV----ESYLRQLCLDGLKKRYPNAG-------EEVRRRLEYELQVINDMGFPGYFLI 340 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DF+++A++ I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R++MPD D Sbjct: 341 VWDFVRFAREKGILVGPGRGSAAGSLVAYTLGITNIDPLKYDLLFERFLNPERVTMPDID 400 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC ++R+EVIRYV +YG +RVAQIITFG++ A+AA+RDVGRAL MPY++VDR+ K+I Sbjct: 401 IDFCYEKREEVIRYVIERYGADRVAQIITFGTMAARAAIRDVGRALNMPYAEVDRVAKMI 460 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P + + +A+ RE +P V +L+++++ +EG+ RHASTHAAG+VIG PL Sbjct: 461 PGELGMTLD-KALEASPELRELYETEPKVHKLVDMARAIEGMPRHASTHAAGVVIGREPL 519 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 ++ +P+YR + TQF + +E+ GL+K D LGL+TLT++ +++ + G ++D+ Sbjct: 520 TRYLPLYRS-SDGVVTTQFAKETVEEIGLLKMDLLGLRTLTVIGDAVNIIKHTTGDEIDI 578 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD TY +L +G+FQLESSGMR L+ ++P+ ++DIIALV+LYRPGP+ + Sbjct: 579 DNIPLDDRATYEMLGRGDAIGVFQLESSGMRAILKELKPEVLDDIIALVALYRPGPLGSG 638 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +V + RK+G+ +I +HP ++P+LK+T GVI+YQEQVM+IA L+G++L EAD+LRRA Sbjct: 639 MVEDFIRRKHGQSEIKYLHPALEPILKDTYGVILYQEQVMRIASDLAGFTLGEADLLRRA 698 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK E + + +FI GA KN I +TIA IF+L+ FA YGFNKSH+AAYA++SYQT Sbjct: 699 MGKKKPEVIAGLRNQFIEGARKNNIEETIAGQIFDLMEYFAGYGFNKSHSAAYALVSYQT 758 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K +YPV ++AA +T + +K+ + ++ ++ I I+PP +N V+F V ++I Sbjct: 759 AYLKANYPVAYMAALLTSVAGSSDKVAVYIEECKRMGIDILPPDINESLVNFTVVGDKIR 818 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 + LAA+K VG HI+ + K F SL DFC R + + + +RV+ESL+ GA D Sbjct: 819 FGLAAVKNVGRQAIEHIIAVRSKKKFASLLDFCERAEHRVVTKRVIESLIKGGAFDSLTG 878 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEKFSVENSSVRFEN 954 +R QLL+ LD ++A +K+ + ++F +G +F ++ L Sbjct: 879 NRRQLLEGLDRCLEWAAKRQKDLSTGQISLFDVYEGDSSFGGEVPLPPVPDFPQHELLAM 938 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ +LG Y SGHPL+ Y+ L + + V + + ++ ++ TR+G Sbjct: 939 EKEMLGLYISGHPLEQYRRELAEKTTATTAQLVEMQDQEEVVIGGIIAGMRKITTRRGET 998 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + + + E FP Sbjct: 999 MLLMNLEDLVGSVEVIVFP 1017 >gi|83746496|ref|ZP_00943547.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551] gi|207743808|ref|YP_002260200.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum IPO1609] gi|83726827|gb|EAP73954.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551] gi|206595208|emb|CAQ62135.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum IPO1609] Length = 1176 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/991 (40%), Positives = 600/991 (60%), Gaps = 38/991 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP FVHL++HS YS+++G + L+ + AAD A+A+TD N F + F ++A G+ Sbjct: 3 SPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P++G ++ +TN + P+ ++LLV +GY L L++R +L +Q + Sbjct: 63 KPVVGA--------DVWITNHDERDKPS--RLLLLVRNKQGYLNLCTLLARAWLSNQHRG 112 Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 I W E G E GL+ L+G G + A + +A K + ++F Sbjct: 113 RAEIAPEWFDEPGVEDAPLSTGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQA 172 Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR G + Y + Q V+LA + +LP+VAT+ F++++D+ AH+ + +A + Sbjct: 173 FYIELQRAGQAGTEAYIQ-QAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R + + Y K + EM ++F+D+P AL NTV+IA+RC+ L++ P LP F Sbjct: 232 LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L + A GLE R L A + +Y RL+FE I +M F G Sbjct: 292 DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467 Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+L+ A ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527 Query: 535 GDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLA 590 L+ P+Y D V +Q++ +E GL+KFDFLGL TLT+L ++ + L Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + S IP +D + +L T+ +FQLES GM+ L+ +PD EDIIALV+LY Sbjct: 588 PSKADWNCSHIPLNDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL A Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM + +E F GA+K+G+S A IF+L+ KFA YGFNKSHAAAYA Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFK 829 +++Y TAW+K H+P EF+AA+M+L MD+ +K+K DA N ++++PP +N F Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D + I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV A Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887 Query: 889 GALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 GA D +R QLL S L + N+ + + + + ++ E + Sbjct: 888 GAFDSLNDNRAQLLVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDE--APW 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 ++ + + E++ LGFY SGH D + +R+ Sbjct: 946 STKRKLQEEKQALGFYLSGHLFDECRDEVRR 976 >gi|207723766|ref|YP_002254164.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum MolK2] gi|206588970|emb|CAQ35932.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum MolK2] Length = 1174 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/991 (40%), Positives = 600/991 (60%), Gaps = 38/991 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP FVHL++HS YS+++G + L+ + AAD A+A+TD N F + F ++A G+ Sbjct: 3 SPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P++G ++ +TN + P+ ++LLV +GY L L++R +L +Q + Sbjct: 63 KPVVGA--------DVWITNHDERDKPS--RLLLLVRNKQGYLNLCTLLARAWLSNQHRG 112 Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 I W E G E GL+ L+G G + A + +A K + ++F Sbjct: 113 RAEIAPEWFDEPGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQA 172 Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR G + Y + Q V+LA + +LP+VAT+ F++++D+ AH+ + +A + Sbjct: 173 FYIELQRAGQAGTEAYIQ-QAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R + + Y K + EM ++F+D+P AL NTV+IA+RC+ L++ P LP F Sbjct: 232 LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L + A GLE R L A + +Y RL+FE I +M F G Sbjct: 292 DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467 Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+L+ A ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527 Query: 535 GDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLA 590 L+ P+Y D V +Q++ +E GL+KFDFLGL TLT+L ++ + L Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + S IP +D + +L T+ +FQLES GM+ L+ +PD EDIIALV+LY Sbjct: 588 PSKADWNCSHIPLNDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL A Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM + +E F GA+K+G+S A IF+L+ KFA YGFNKSHAAAYA Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFK 829 +++Y TAW+K H+P EF+AA+M+L MD+ +K+K DA N ++++PP +N F Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D + I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV A Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887 Query: 889 GALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 GA D +R QLL S L + N+ + + + + ++ E + Sbjct: 888 GAFDSLNDNRAQLLVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDE--APW 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 ++ + + E++ LGFY SGH D + +R+ Sbjct: 946 STKRKLQEEKQALGFYLSGHLFDECRDEVRR 976 >gi|153006392|ref|YP_001380717.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5] gi|152029965|gb|ABS27733.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5] Length = 1217 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1087 (38%), Positives = 640/1087 (58%), Gaps = 91/1087 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +H+ YSLL+GA+ + ++L + A +A+TD NLF A++F +KA AG++ Sbjct: 2 PDFVHLHLHTLYSLLDGAIRIKDLLKTVQAKGMKTVAVTDHGNLFGAVDFYKKAKDAGVK 61 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 PI+G + + D + + G+ ++LL AEG+ L L S+ + + Sbjct: 62 PIMGMEAYVAGDKGRHDRSERVGR-------HLILLAKNAEGWANLRFLSSKAFT-EGFY 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 RI L++ ++GL+ LT +G + R A + ++ +F ++ Sbjct: 114 YDPRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLE 172 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q + ++ +++ QL +PLVAT ++ ++S +D +AH+VLM +A + Sbjct: 173 VQSNGMREQLDVNAKLAQLGRDEGIPLVATADAHYVSRQDAKAHEVLMCIASNKTFQDPK 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R D ++++ +MV+ + EA++NT+ IA C+ LQ+ LPRF + D + Sbjct: 233 RLRHETDGLFIQSPDDMVAALPEYREAIDNTIRIAEMCNVELQLGKSFLPRF--QLPDGV 290 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVAD 362 +EE E A GL+ R + K H +D YRQRL+ EL VI +M FSGYFLIV D Sbjct: 291 SEEEWIE--KLAKDGLDARFRE-IDGKYPHDRDAYRQRLEMELGVIKKMGFSGYFLIVQD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI W K++ IPVGPGRGSGAGS+ A++L ITD+DPLR++LLFERFLNP+R+SMPDFD+DF Sbjct: 348 FINWGKQHQIPVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+RRDEVI YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ D++ KL+P D Sbjct: 408 CQNRRDEVIDYVREKYGKDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDKIAKLVP-D 466 Query: 483 PAH----PVSLQAIADDSRFREARLAD----PSV----------------DRLLEISQKL 518 P P+ D E RL + P+V LL+I+ L Sbjct: 467 PVQGKTPPLKELVFGSDKMPAEPRLEELYKKPTVISQWVDEKGVQHTVTTKDLLDIAMSL 526 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R A HAAG+VI D+PL VP Y+D +S++ V+QF + +E AGL+KFDFLGLKT Sbjct: 527 EGLNRQAGLHAAGVVIADKPLWDYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKT 586 Query: 579 LTLLQKSLDFLAQRGVKV-DLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 LT++ +L + Q ++ D + IP DD + Y L++ T G+FQ+ESSG + + M Sbjct: 587 LTVIDDALRMVKQNHPEMKDFTAADIPIDDPKVYELISRGDTAGVFQMESSGFTEMVIKM 646 Query: 636 QPDCIEDIIALVSLYRPGPIDN--------IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 +P ED+IA +LYRPGP+D + VY +RK+G+EK+V HP ++P+L+ T G Sbjct: 647 KPSRFEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVVYDHPKLEPVLEPTYG 706 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 VI+YQEQVMQI+Q+L+GYSL +AD+LRRAMGKK E M K++ F++GA K+G+ + +A Sbjct: 707 VIVYQEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVKSGVDEKVAG 766 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 IF+L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E N +K+ Sbjct: 767 GIFDLMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHIS 826 Query: 808 DARQFNIQIMPPSVNTPCVDF-----------------KVGDNRIYYSLAAIKGVGTTTA 850 +AR I+++PP VN DF RI + L A++GVG + Sbjct: 827 EARADGIEVLPPDVNESDKDFGAFGPAESARPSTGPGRAANKGRIRFGLGAVRGVGDSAV 886 Query: 851 RHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + I+EA A+ PF +L D SRVDSKK+N++V+E+LV +GALD G R QL +D+ Sbjct: 887 QAILEARAEGGPFKTLYDLASRVDSKKINKKVVEALVKSGALDFEGVPRWQLFAGIDSAF 946 Query: 910 KYAQWVEKNRTNKHENIFAH-------------EKGTFSDKITLEKFSVENSSVRFENEQ 956 + +R + ++F G ++T+E++ VR E+ Sbjct: 947 AAGASAQADRASGQASLFGALPAAQVEQKPRYPRPGDVVGELTVEEWP---ERVRLAFEK 1003 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRI 1015 LGFY +GHPL Y+ +R+ G+ + + +V + +++ + KG+R Sbjct: 1004 EALGFYLTGHPLQGYEKEVRRYASTTCAAVANKRHGDKVSVVGVVAAVRERMNKEKGTRF 1063 Query: 1016 GWVTFSE 1022 G++T + Sbjct: 1064 GFLTLED 1070 >gi|73542219|ref|YP_296739.1| DNA polymerase III subunit alpha [Ralstonia eutropha JMP134] gi|72119632|gb|AAZ61895.1| DNA polymerase III, alpha subunit [Ralstonia eutropha JMP134] Length = 1175 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1049 (40%), Positives = 616/1049 (58%), Gaps = 68/1049 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS YS+++G + L++ + A+D A+A+TD N F + F ++A G+ Sbjct: 6 APRFVHLRVHSEYSVVDGIVRLDDAVKAAASDGMGALALTDLANAFGLIRFYKEARGGGV 65 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P++G ++ + N+ P ++LLV GY L L+SR +L +Q + Sbjct: 66 KPVVGA--------DVWLANEDDRDKPA--RLLLLVQDRVGYLNLCTLLSRAWLTNQHRG 115 Query: 128 SVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 I W +E G GLI L+G G + A + A + + +F R Sbjct: 116 RAEIEPGWFEEPGEGGQPLATGLIALSGAMGGDVGMALANGNVDAARRAAAHWAAVFPQR 175 Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR H G D Y + Q V LA +LP+VAT+ F++ +D+ AH+ + +A + Sbjct: 176 FYIELQRAGHPGTDAYVQ-QAVHLAAEMQLPVVATHPVQFMTPDDFTAHEARVCIAEGEL 234 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D Y K + EM ++F+D+P AL+N VEIARRC+ L++ P LP F Sbjct: 235 LANPRRTRRFTTDQYFKTQDEMCALFADIPSALQNAVEIARRCNLTLELGKPRLPLFPTP 294 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L A GLE RL+ + +Y RL+FE I +M F G Sbjct: 295 DGMSL----DDYLVFMAKDGLEKRLSVLFPNEAEREAKRPEYYARLEFETGTIIKMGFPG 350 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 351 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSM 410 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y VD + Sbjct: 411 PDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGI 470 Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+++ A ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 471 AKLIPFKPGKLVTIEEAKKEEPLLTERENNEEEVRQLLELAQRVEGMTRNVGMHAGGVLI 530 Query: 535 GDRPLSQLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSL 586 L+ P+Y D S + V+Q++ +E AGL+KFDFLGL TLT+L ++ + Sbjct: 531 APGRLTDFCPLYTQGGQNDGMSGV-VSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYI 589 Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 L + S IP DD + +L T T+ +FQLES GM+ L+ +PD EDIIAL Sbjct: 590 RRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIAL 649 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 V+LYRPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYS Sbjct: 650 VALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYS 709 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM + + F GA KNG++ A +IF+L+ KFA YGFNKSHA Sbjct: 710 LGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLNAEQADDIFDLMEKFAGYGFNKSHA 769 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + I ++PP VN Sbjct: 770 AAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKIAVLPPDVNASEY 829 Query: 827 DFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F D + I Y L IKG G I+ A ++PF L DFC RVD +++NRR +E+L Sbjct: 830 RFAPTDAKTIRYGLGGIKGSGQGAIEDILRAREERPFKDLFDFCERVDRRQVNRRTIEAL 889 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDK 937 + AGA D +R QLL S+ + A +K + ++F AH + Sbjct: 890 IRAGAFDSLNNNRAQLLASVSIAMEAAD--QKAESANQVSLFDLMDDAGEAHRPELIDEP 947 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR---KMGIKGYEESVAT----- 989 K ++ + E++ LG+YFSGH D + +R K + G E+ V Sbjct: 948 AWTPKRTL-------QEEKQALGYYFSGHLFDACRDEVRRFVKSTLAGLEKEVQGNGGGF 1000 Query: 990 ---IRGNNIRLAAMVVSKQQKKTRKGSRI 1015 +RG I A ++ + + T++G I Sbjct: 1001 GRDVRGKTI--AGVIAGVRTQMTQRGKMI 1027 >gi|134300158|ref|YP_001113654.1| DNA polymerase III DnaE [Desulfotomaculum reducens MI-1] gi|134052858|gb|ABO50829.1| DNA polymerase III catalytic subunit, DnaE type [Desulfotomaculum reducens MI-1] Length = 1225 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1051 (38%), Positives = 627/1051 (59%), Gaps = 50/1051 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA +N + + ++AITD +F ++F + G++PI Sbjct: 12 FVHLHVHTEYSLLDGASRINQMAKQAKESGMNSLAITDHGCMFGVVDFYKVCHKEGVKPI 71 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC++ + + + T + P+ +VLL EGY+ L++LVS Y + Sbjct: 72 LGCEVYVAPRRRIDRTPK----LDDQPNHLVLLAENQEGYKNLLKLVSLGYT-EGFYYKP 126 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ LQ +GLI L+ +G + + + A + + +FG D ++ LQ Sbjct: 127 RVDKELLQRY-HKGLIALSACLAGEVADKILGSQPEKARQAAREYVDIFGKDNFFLELQD 185 Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H GY R +++++A ++PLVATN+ +L E E DVL+ + ++ R Sbjct: 186 H-GYQEQRTVNRELLKIAKELQIPLVATNDVHYLKREHAEIQDVLLCIQTGKSINTPGRM 244 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + + YLK+ EM +F+++P+AL NT+ IA RC L+ LP F E + Sbjct: 245 KFESQEMYLKSPHEMNLLFAEIPDALSNTLRIAERCQVDLEFGKYHLPYFTVPE----ES 300 Query: 306 EEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LR K + +GAI + G+ + ++RL++ELNVI +M + YFLIV DFI Sbjct: 301 SPAQYLREKCL--------EGAIKRYGHCSGPVQERLEYELNVIGKMGYDEYFLIVWDFI 352 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A++ I VGPGRGS AGS+ +YAL IT+IDPL++ LLFERFLNP+R+SMPD DIDF Sbjct: 353 HYARQKGIAVGPGRGSAAGSIVSYALGITNIDPLKYGLLFERFLNPERISMPDIDIDFDY 412 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI Y+ KYG +RVAQIITFG++ A+AA+RDVGRAL MPY VDR+ KL+P + Sbjct: 413 ERRGEVIEYIVQKYGTDRVAQIITFGTMAARAAIRDVGRALDMPYGDVDRVAKLVPTELN 472 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 ++ +A+ + A DP V RL++ + LEG+ RHASTHAAG+VI PL + +P Sbjct: 473 ITIA-KALTSSPDLKAAYDQDPEVKRLVDTAAALEGMPRHASTHAAGVVISREPLVEYLP 531 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + + L TQF M +E+ GL+K D LGL+ LT++ ++++ + Q + K+D++ IP Sbjct: 532 LSK-TSDGLVTTQFPMTTVEELGLLKMDLLGLRNLTVISETVNLIEQIKETKLDINTIPL 590 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 DD T+ +LT +G+FQLESSGMR L ++P+ EDI+ALV+LYRPGP+ + +V + Sbjct: 591 DDQATFDMLTRGEGVGVFQLESSGMRNILRELKPNAFEDIVALVALYRPGPLGSGMVEDF 650 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+G+ K+ HP ++P+LKET GVI+YQEQVM IA++++GYSL +AD LR+AMGKKI Sbjct: 651 IQRKHGQNKVDYFHPDLEPILKETYGVILYQEQVMMIARIMAGYSLGQADALRKAMGKKI 710 Query: 722 KEEMDKQKERFISGAS--------KN--------GISKTIAVNIFELLAKFADYGFNKSH 765 + M ++ FI+G++ KN G S+ +A +F+L+ FA YGFNKSH Sbjct: 711 AKIMGMHRDWFINGSTLDDKGKPLKNPIPGAVARGYSRQLAEKMFDLMEYFAGYGFNKSH 770 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++SYQTA++K +YPVE++AA +T DN +K+ + + R+ IQ++PP +N Sbjct: 771 SAAYALVSYQTAYLKANYPVEYMAALLTSVRDNTDKVVLYIDECRRMGIQVLPPDINLSR 830 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLES 884 +F + I + +AA+K VG + I++ K PF D C R+D++ NRRVLES Sbjct: 831 ENFTAANGAIRFGMAAVKNVGWGAVQEIIQIREKKGPFTGFYDLCGRLDTRIANRRVLES 890 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEK 942 L+ AGALD FGY R QLL LD ++A +++R ++F E ++ L Sbjct: 891 LIKAGALDAFGY-RSQLLAGLDTGLEHAARSQRDREQGQVSLFDLMSESPAQVMELKLPH 949 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 S + E E+ LG Y SGHPL + +L ++ ++ GNN+ +A ++ Sbjct: 950 VPRLTSRQQLEMEKEALGLYISGHPLSEFGWLLDQLEVQRVVHLAELPDGNNLLVAGIIS 1009 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ +RKG + ++T + E FP Sbjct: 1010 TIKRITSRKGDPMAFLTLEDLTGSCEVVVFP 1040 >gi|74316876|ref|YP_314616.1| DNA polymerase III subunit alpha [Thiobacillus denitrificans ATCC 25259] gi|74056371|gb|AAZ96811.1| DNA polymerase III, alpha subunit [Thiobacillus denitrificans ATCC 25259] Length = 1141 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1026 (39%), Positives = 601/1026 (58%), Gaps = 55/1026 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++H+ YS+++G + ++ + + PA+ ++D +N F ++F + A AG++ Sbjct: 4 PRFIHLRLHTEYSIVDGLVRVDEAVKRAREIAMPALGVSDLSNTFGWVKFYRAARGAGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ ++N P+ ++LLV EGY+RL EL++R Y + + Sbjct: 64 PIFGC--------DVWVSNATDRNRPS--RLLLLVQHREGYRRLCELLTRAYQENLHRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I SWL E GL+ L+GG G + +A + VA + LF R Y+ LQR Sbjct: 114 AEIDPSWLAE-NNGGLLALSGGDGGNVAQAIIDDKPAVARAAAEAWAALFPGRYYLELQR 172 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + + ++ + LP VAT+ FL+ +D++AH+ + +A ++ RPR Sbjct: 173 FGQAHTERLIDGLLDIGAELGLPAVATHPIQFLAADDFKAHEARVCIAEGMMLGDPRRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y K EM ++F+DLPEAL N+VEIA+RC+ L++ LP F + + Sbjct: 233 PFTAEQYFKTPDEMAALFADLPEALANSVEIAKRCNLTLELGKSKLPDFPTPDGMGL--- 289 Query: 307 EENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ +R +A GL R+A + +Y +RL+FEL I +M F GYFLIVADF Sbjct: 290 -DDYMRQRAYEGLAERMAHLYPDEAERAAKRPEYTERLEFELGTIIQMGFPGYFLIVADF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 349 INWAKNNGVPVGPGRGSGAGSLVAYCLRITDLDPLAYDLLFERFLNPERVSMPDFDIDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QD RD VI+YV++KYGH V+QI TFG++ AKA LRDVGR L +PY VD+ KL+PN+ Sbjct: 409 QDGRDRVIQYVKDKYGHAAVSQIATFGTMAAKAVLRDVGRVLDLPYLFVDKFVKLVPNEL 468 Query: 484 AHPVSLQAIADDSRFREARLADPSVDR----------LLEISQKLEGLYRHASTHAAGIV 533 +SL EAR +P +D LL +++KLEG+ R+ HA G++ Sbjct: 469 G--ISLA---------EAREKEPQIDERARNEEELAELLPLAEKLEGITRNVGMHAGGVL 517 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I L+ P+Y+ SD V+QF+ +E GL+KFDFLGL+TLT+L +++ F+ + Sbjct: 518 IAPGKLTDFCPLYQAEGSDAAVSQFDKDDVEAIGLVKFDFLGLRTLTILAEAVRFVQRHE 577 Query: 594 VKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 + D L +P DD Y L T +FQ ES + + ++ DC EDIIAL++L R Sbjct: 578 DRKDFRLEDLPLDDPAVYRLFADGNTTAVFQSESRSAKDLEKRLKGDCFEDIIALMALNR 637 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+ + +V + RK GK+K HP ++P+LK T G+I+YQEQVM +AQ+L+GYSL Sbjct: 638 PGPLGSGMVDDFIARKQGKQKPEYFHPDLEPVLKSTYGIIVYQEQVMLVAQILAGYSLGG 697 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F+ GA K G+ IA +F+L+ KFA+YGFNKSH+AAY Sbjct: 698 ADMLRRAMGKKKPEEMAKQRAIFLEGADKRGVDVKIAERLFDLMEKFAEYGFNKSHSAAY 757 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++Y TAW+K +YP EF+AA+M+ EM + +K++ F +D R + ++PP +N F Sbjct: 758 ALVAYHTAWLKAYYPAEFMAATMSSEMSDTDKVRIFYEDCRANGLTMLPPDINLSGYRFD 817 Query: 830 -VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V I Y L AIKG G I+ E A+ P+ L D RVD + LNRRVLE+LV Sbjct: 818 PVSRTEIRYGLGAIKGSGEAAIGAIVAERGANGPYKGLFDLARRVDKRYLNRRVLEALVK 877 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVE 946 AGA D R L+ S+ + A R+ +F +G D + + + + Sbjct: 878 AGAFDSLSDHRASLMASIGVALETAD--RAARSGGQVGLFGEVLEGGGEDLVDVPYWPEQ 935 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + E+ LG++FSGHP Y + K +S+ R + LA + VS + Sbjct: 936 E---KLLQEKSALGYFFSGHPFTAYLAEVSGFA-KRRLDSLEPAR-EPVMLAGVAVSLRT 990 Query: 1007 KKTRKG 1012 + TR+G Sbjct: 991 QMTRRG 996 >gi|322435813|ref|YP_004218025.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9] gi|321163540|gb|ADW69245.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9] Length = 1176 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/997 (40%), Positives = 594/997 (59%), Gaps = 42/997 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA ++ ++ + Q ++A+TD N+F A+ F A GI+PI Sbjct: 5 FTHLHLHTDYSLLDGACDVDKLVAHVDKIGQKSVAMTDHGNIFGAVHFFNSAKKKGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+L I ++ + G +++L EGY+ L+ L S L ++ R Sbjct: 65 LGCELYICQAEDHRAKGDGDK----YNHLLVLAENQEGYRNLVRLTSEAALHGFYRKP-R 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + ++L + TEGLI +G +G + + A+ F+++FG ++ +Q H Sbjct: 120 VSKNFLAK-HTEGLIGFSGCLAGEVSQHLMAGDYDKAKTTAGGFEEMFGRGNFFLEVQDH 178 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + D+ + ++ ++PL+ATN+S ++ ++D AH+VL+ V T S D R Sbjct: 179 KLAPDKAVIEAMFRMEKDLDIPLIATNDSHYIEDQDARAHEVLLCV--QTAGSMNDPKRF 236 Query: 249 ---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 T + Y+K EM F D PE L T++ RC+ L P F + ++ Sbjct: 237 KFDTEEFYIKTAEEMARFFPDHPEVLSRTMQFPERCNLELNKVDNPFPDFPVPAGETLES 296 Query: 306 EEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E R E +A G + K + DY RL+ E++ I MKF GYF+IV Sbjct: 297 YFEQVCREGLKKRFETNVAHLERTGKLRK--NKTDYEARLNREIDCIKAMKFPGYFMIVW 354 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A++ IPVGPGRGS AGS+ AY + ITD+DPL+ LLFERFLNP+R+SMPD DID Sbjct: 355 DFIRYAREQGIPVGPGRGSAAGSLVAYCMEITDVDPLQNELLFERFLNPERISMPDIDID 414 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR EVI YVQ KYG ++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ K+I Sbjct: 415 FCMNRRGEVIEYVQRKYGKDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKMIQG 474 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 +S + + D+ +A ++P + L++ + +LEGL R A HAAG+VI PL++ Sbjct: 475 RIGVTIS-EVLKDNGPLTKAYESEPQIRELIDTALRLEGLVRGAGVHAAGVVIAPSPLTE 533 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600 LVP+ R +S+ VT ++M IEK GL+K DFLGL TLT++ +L + RG VDL+ Sbjct: 534 LVPVTR-AKSEEIVTSYDMGAIEKMGLLKMDFLGLTTLTVIDDALKLIKLTRGEDVDLAT 592 Query: 601 IPFDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I DD +TY + + T G+FQ ES GMR L +P+ +ED+ AL +LYRPGPI + Sbjct: 593 ISLDDAKTYEQVFHRALTSGVFQFESGGMRDVLRRYKPNTVEDLTALNALYRPGPIQGGM 652 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V + RK G+ + P ++P+L+ET GV++YQEQVMQI+ L+G+SLS+AD+LRRAM Sbjct: 653 VDEFIERKWGRRAVEYELPELEPILRETLGVMLYQEQVMQISNKLAGFSLSQADMLRRAM 712 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EM KQK +F+ GA++N K +A NIF+L+AKFA+YGFNKSH+AAYA+++Y TA Sbjct: 713 GKKDVAEMTKQKVKFMEGAAENKHPKAVAGNIFDLMAKFAEYGFNKSHSAAYALLAYHTA 772 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++KTHY VEF+AA +T E E + K+ + ++ NI ++PP V F D I + Sbjct: 773 YLKTHYTVEFMAALLTSETSKPENVVKYISECKEINIAVVPPDVQISQPSFTPQDGAIRF 832 Query: 838 SLAAIKGVGTTT------ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 LAAIK VG AR ++A F SL +FC +VD + LN+RVLESL+ AGA+ Sbjct: 833 GLAAIKNVGHNAIQSIIDARGALQAEGKDGFASLWEFCEKVDLRLLNKRVLESLIKAGAM 892 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE----- 946 DCFG R ++ +LDN AQ +K++ +F G F + +VE Sbjct: 893 DCFG-KRAAVMAALDNAMDRAQKAQKDKAAGQHGLFF--GGIFDSDVPAAGAAVEALPNA 949 Query: 947 ---NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 + R +NE+ VLGF+ SGHP+D Y+ LR M + Sbjct: 950 PEWDEHTRLQNEKDVLGFFVSGHPMDKYREKLRNMKV 986 >gi|258546181|ref|ZP_05706415.1| DNA polymerase III, alpha subunit [Cardiobacterium hominis ATCC 15826] gi|258518606|gb|EEV87465.1| DNA polymerase III, alpha subunit [Cardiobacterium hominis ATCC 15826] Length = 1177 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1044 (39%), Positives = 608/1044 (58%), Gaps = 76/1044 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + HL +HS +SL + L + I+D + AIA+TD NNL+ AL+F +KA AAGI+P Sbjct: 3 ALTHLHIHSEFSLSDSILRVGEIVDFAKSQGAEAIALTDRNNLYGALKFYKKARAAGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC D+ ++D+ NQ ++LL +G+ L ELVS Y DQ Q V Sbjct: 63 ILGC--DLTVRDSDGTDNQ----------LILLAQNLKGFIHLCELVSFAYQYDQDHQGV 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + EGLI L+GG G + R +Q AEKR ++ +F DR Y+ L RH Sbjct: 111 AVHIERFTPTQCEGLIALSGGIDGDLARFLRRRDAQGAEKRAAFWQGIFPDRYYLQLARH 170 Query: 190 ------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +D R++ + VATN + F + +DY+ H+V + +++ + + Sbjct: 171 GQPGEAEYFDWCRDA-----GRKLGIAAVATNLACFPTADDYDVHEVRVCISNGWLRADD 225 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR T ++ + + M F+D P+ L NT +A RC+ L + LP F + + Sbjct: 226 KRPRYFTQKYHFTSDAVMAERFADAPQILANTHAVAARCNLELTLGKNYLPDFPLPDGVN 285 Query: 303 IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 I E L + A +GLE+RLAQ + Y +RL EL VI +M F GYFLI Sbjct: 286 I----ETFLIDSAKSGLELRLAQLFPDEAERAAKRAPYDERLAIELGVINQMGFPGYFLI 341 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFIQWAK ++IPVGPGRGSGAGS+ AYAL ITD+DPL + L FERFLNP+R+SMPDFD Sbjct: 342 VADFIQWAKDHDIPVGPGRGSGAGSLVAYALKITDLDPLAYDLFFERFLNPERVSMPDFD 401 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC +RRDEVI YV +KYG +RV+QI T G++ AKA LRDVGR L +PY VD+L + Sbjct: 402 VDFCMERRDEVIEYVSHKYGAQRVSQIATHGTMAAKAVLRDVGRVLGVPYPVVDKLVATV 461 Query: 480 PNDPAHPVSL-QAIADDSR-----------FREARLADPSVDRLLEISQKLEGLYRHAST 527 P P ++L A+ ++ +E D + +++I +LEGL R+ Sbjct: 462 P--PVLGITLPDALGRSTKSQDKPELRSEAMQELYEKDEEMRDIIDIGLQLEGLARNVGK 519 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HA G+VI L+ +Y + TQF+ IE GL+KFDFLGL+TLT++ +L Sbjct: 520 HAGGVVIAPTKLTDFSALYSESAGAGIATQFDKDDIEAMGLVKFDFLGLRTLTVIDWALG 579 Query: 588 FLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 + R + +D++ +P DD +TY LL + T +FQLESSGM++ + ++PD ED Sbjct: 580 HINARRTREGQPPLDIATLPLDDPQTYALLQSTRTTAVFQLESSGMKELIRKLRPDTFED 639 Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 IIALV+L+RPGP+ + +V + NRK+G ++ HP ++ +L+ T GV++YQEQVMQ+AQ Sbjct: 640 IIALVALFRPGPLGSGMVDDFINRKHGLAEVEYPHPDLEGILQTTYGVMVYQEQVMQVAQ 699 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 L+ YSL EAD LRRAMGKK EEM + K+ F+S A + G+ + A +IF+L+AKFA+YG Sbjct: 700 KLANYSLGEADNLRRAMGKKKAEEMARNKDIFVSRAVERGVPEKQATDIFDLMAKFAEYG 759 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSH+AAYA++SYQTAW+K HYP E +AA +T E++ ++KI +F +AR + ++PP Sbjct: 760 FNKSHSAAYALLSYQTAWLKAHYPAELMAAVLTSEIEKIDKIVRFINEARDMGLTVIPPC 819 Query: 821 VNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878 +N F V + I Y L A+KGVG ++E A + + SLED C R+D KKLN Sbjct: 820 INRSQYTFTVSERGEIIYGLGAVKGVGEAAINILLEERAKNGDYTSLEDLCRRLDLKKLN 879 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 R+ LE+L+ AG+ D +R L +++ K A+ +NR ++F G F D Sbjct: 880 RKTLETLIRAGSFDNIEPNRGALFAAVEQAIKLAEQHHRNRHQGQGDMF----GLFGDSS 935 Query: 939 TLEKFSV-----ENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 + S+ E +R E++ LG + S HP+D + L ++ R Sbjct: 936 RDQPPSLIMNPEEAWDLRQTLAEEKQTLGLFLSAHPIDEARDTLLQIS-----------R 984 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRI 1015 G N+ + Q+ TR+G I Sbjct: 985 GRNLAQLQENMENWQRPTRRGDSI 1008 >gi|241663600|ref|YP_002981960.1| DNA polymerase III subunit alpha [Ralstonia pickettii 12D] gi|240865627|gb|ACS63288.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12D] Length = 1172 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1039 (40%), Positives = 618/1039 (59%), Gaps = 52/1039 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP FVHL++HS YS+++G + L++ + A D A+A+TD N F + F ++A G+ Sbjct: 3 SPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+G ++ +TN + PT ++LLV +GY L +L++R +L +Q + Sbjct: 63 KPIVGA--------DVWITNHDERDKPT--RLLLLVRDKQGYLNLCQLLARAWLSNQHRG 112 Query: 128 SVRICLSWLQEIGTEG------LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 I W E G E L+ L+G +G I A + +A K + ++F Sbjct: 113 RAEIAPEWFDEPGVENAPLAAGLLALSGAMAGDIGVALANGNEALARKLATHWSRVFPGA 172 Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR H G + Y + Q V+LA +LP+VAT+ F++ +D+ AH+ +A + Sbjct: 173 FYIELQRAGHAGTEAYIQ-QAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGEL 231 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T + Y K + EM ++F+D+P AL N V+IA+RC+ L++ P LPRF Sbjct: 232 LANPRRARRFTTEQYFKTQDEMCALFADIPSALANAVQIAQRCNLKLELGKPKLPRFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + + ++ L A GLE R+ A+ + A+ Y RL+FE I +M F Sbjct: 292 DGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVRESKRAE-YYARLEFETGTIIKMGFP 346 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S Sbjct: 347 GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVS 406 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD Sbjct: 407 MPDFDIDFCQHGRDRVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDG 466 Query: 475 LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 + KLIP P V+L+ A ++ E + V +LLE++Q++EG+ R+ HA G++ Sbjct: 467 VAKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVL 526 Query: 534 IGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFL 589 I L+ P+Y D V +Q++ +E GL+KFDFLGL TLT+L ++ + L Sbjct: 527 IAPGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRML 586 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 + S IP D + + +L T T+ +FQLES GM+ L+ +PD EDIIALV+L Sbjct: 587 DPSKADWNCSHIPLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 646 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL Sbjct: 647 YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGG 706 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM + + F +GA+K+G+S A IF+L+ KFA YGFNKSHAAAY Sbjct: 707 ADLLRRAMGKKKAEEMAEHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAY 766 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDF 828 A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K DAR N + I+PP +N F Sbjct: 767 ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTILPPDINASQYRF 826 Query: 829 KVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 D + I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV Sbjct: 827 APTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVR 886 Query: 888 AGALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 AGA D +R QLL S L + N+ + + + + ++ E Sbjct: 887 AGAFDSLNDNRAQLLASIGLAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPELVDE--PA 944 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYK------------PILRKMGIKGYEESVATIRGN 993 ++ + + E++ LGFY SGH D Y+ + R++ KG Sbjct: 945 WSTKRKLQEEKQALGFYLSGHLFDEYRDEVRRFARTTLADLAREVTDKGNGGGYGNRDAR 1004 Query: 994 NIRLAAMVVSKQQKKTRKG 1012 N +A ++V ++ + T++G Sbjct: 1005 NKTVAGVIVGQRTQMTQRG 1023 >gi|330817862|ref|YP_004361567.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3] gi|327370255|gb|AEA61611.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3] Length = 1179 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1031 (40%), Positives = 612/1031 (59%), Gaps = 51/1031 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++++ AAD Q A+A+TD N F + F Q+A G++ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDLVKAAAADGQGALALTDLGNAFGLVRFYQEARGKGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPS--RLLLLVRDKAGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL+ +GL+ L+G G I A +++ A + + ++F Y+ LQR Sbjct: 114 AEVDAQWLESELGQGLLALSGAQQGDIGIALAAGNAEAARRHAQRWARVFPGGFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + + +LA +LP+VAT+ F+ +ED+ AH+ + ++ +++ R Sbjct: 174 YGQPGGEAYVQ-EAAKLAAELQLPVVATHPLQFMGDEDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + ++EM +F+D+P A++NTVEIA+RC+ L++ P LP F + + Sbjct: 233 KRFTIEQRFRTQAEMAELFADIPSAVQNTVEIAKRCNLKLELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y QRL+FE N I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSQEGLEKRLVQLFPDEAERDAQRATYYQRLEFECNTIKKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + F+ + K D SL Sbjct: 529 FCPLYAQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPAKADWSL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+MTL MD+ +K+K D ++++PP +N F+ D + Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCELNGLKVLPPDINQSEYRFEPVAEADGKR 828 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I Y L A+KG G I+ A + F L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SKTIRYGLGAVKGSGQNAIEEILRARKEGGAFKDLFDFCERIDRRLVNRRTVEALIRAGA 888 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH------ENIFAHEKGTFSDKITLEKFS 944 D +R QL+ S+ + A E N E+ AH L Sbjct: 889 FDVLTPNRAQLIASVPLAMEAADQAEANAMQAGLFDMGAESPHAH---------ALVDEP 939 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + R + E+ LGFY SGH D Y+ +R+ E G + +A ++ S Sbjct: 940 AWDEKRRLQEEKGALGFYLSGHLFDAYREEVRRFARMKLGE---LKEGRDKLVAGVIASL 996 Query: 1005 QQKKTRKGSRI 1015 + + T++G I Sbjct: 997 RTQMTQRGKMI 1007 >gi|152995316|ref|YP_001340151.1| DNA polymerase III subunit alpha [Marinomonas sp. MWYL1] gi|150836240|gb|ABR70216.1| DNA polymerase III, alpha subunit [Marinomonas sp. MWYL1] Length = 1158 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1066 (40%), Positives = 612/1066 (57%), Gaps = 77/1066 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SF+HL+VH+ +SL++G + + +L PA+AITD NNL + F + A GI Sbjct: 2 STSFIHLRVHTEFSLVDGLVKIKGLLGTTEFMSMPAVAITDENNLCGFVRFYKGAMEKGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G + + D++ + LL ++ +GY+ +I ++S+ Y L Q + Sbjct: 62 KPICGADVVVAEDDDVDSRYR----------FTLLATSNKGYKNIIAIISKGYQLGQVEG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I W+ E +E +I L+G G I + A+ RL + +F +R YV LQ Sbjct: 112 RPIIQREWI-ETHSEDVIALSGAGFGDIGYLLQKGRHEQAKNRLAHWMSIFPNRFYVELQ 170 Query: 188 R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R G + Y + VV LA + P+VATN+ FL E++EAH+ + + + R Sbjct: 171 RTSRPGEESYIHA-VVPLAGELDCPVVATNDVRFLKRENFEAHEARVCIHDGVTLDDPRR 229 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------- 293 R + + Y K EM +F D+PEALENTVEIA+RCS + + LP Sbjct: 230 KRRYSEEQYFKTPEEMAELFQDIPEALENTVEIAKRCSVDVLLGEYFLPDYPVPEGMTME 289 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F K D E N L K +E R Q+Y RLDFEL +I +M F Sbjct: 290 EFFSKLSYDGLIERFNFLTKKYGERIEKR-----------RQEYWDRLDFELTIINQMGF 338 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIV DFIQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+ Sbjct: 339 PGYFLIVMDFIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERV 398 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFDIDFC D RD VI YV YG + V+QIITFG++ AKA +RDV R PYS D Sbjct: 399 SMPDFDIDFCMDNRDRVIDYVSRTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGD 458 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 +L KLIP + + +A+ ++ E D ++E++ LEG+ R+ HA G+V Sbjct: 459 KLSKLIPFEIGMTLK-KALEEEPALPEFLAGDEDAAEVMEMAISLEGVVRNFGKHAGGVV 517 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLA 590 I L P+Y + VTQ++ +E+AGL+KFDFLGLKTLT++ K++D + Sbjct: 518 IAPTKLIDFAPLYCEEDGSGLVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWAVKNIDAIN 577 Query: 591 QRGVK--VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + K +D+SLI +D TY LL T +FQLES GM++ ++ + P EDIIALV+ Sbjct: 578 ELEGKPPLDISLIDLEDRSTYDLLKRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVA 637 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQ 700 LYRPGP+ + +V + NRK+G+ ++ HP LI P+L+ T G+I+YQEQVMQIAQ Sbjct: 638 LYRPGPLGSGMVDDFINRKHGRAELAFPHPDYQHQDLI-PVLEPTYGIILYQEQVMQIAQ 696 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 +L+ +SL AD+LRRAMGKK E M +Q+ F+ GA KN I K ++ NIF+L+ KFA YG Sbjct: 697 VLAKFSLGGADLLRRAMGKKKPEVMAEQRLIFMEGALKNNIDKDLSGNIFDLMEKFAGYG 756 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSH+AAYA++SYQTAW+K HYP F+AA ++ +M N +KI F ++ R + + P+ Sbjct: 757 FNKSHSAAYALVSYQTAWLKNHYPAPFMAAVLSADMQNTDKIVIFIEECRSMKLALELPN 816 Query: 821 VNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879 VN F V I Y L AIKGVG I+EA D PF+ + DFC RV +K+N+ Sbjct: 817 VNESVFKFTVNPKGAIVYGLGAIKGVGEGPIDAIVEARKDGPFEHIFDFCQRV-GRKVNK 875 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 RV+E+LV +GA D G +R L +D K A KN+ ++F IT Sbjct: 876 RVMEALVRSGAFDTIGPNRATLFACIDEALKRAVQDAKNQDAGMMDLFG---------IT 926 Query: 940 LEKFSVENS------------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 +E+ + E++ R + E+ LG Y +GHP+D Y+ +R+ ++ + Sbjct: 927 VEE-NTEDAYREIGIQHEWPPRQRLDGEKDTLGLYVTGHPIDEYEKEIRRF-VRSKIVDL 984 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 RG+ +A ++V + K++KG I +VT + + E FP Sbjct: 985 QPKRGDTQVMAGLIVDLRITKSKKGGNIAFVTLDDRSARIEVTVFP 1030 >gi|300703510|ref|YP_003745112.1| DNA polymerase III subunit alpha [Ralstonia solanacearum CFBP2957] gi|299071173|emb|CBJ42487.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CFBP2957] Length = 1176 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/990 (40%), Positives = 597/990 (60%), Gaps = 38/990 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++HS YS+++G + L+ + AAD A+A+TD N F + F ++A G++ Sbjct: 4 PRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P++G ++ +TN + P+ ++LLV +GY L L++R +L +Q + Sbjct: 64 PVVGA--------DVWITNHDERDKPS--RLLLLVRNKQGYLNLCTLLARAWLSNQHRGR 113 Query: 129 VRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 I W E G E GL+ L+G G + A + +A K + ++F Sbjct: 114 AEIAPEWFDEPGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQAF 173 Query: 183 YVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQR G + Y + Q V+LA + +LP+VAT+ F++++D+ AH+ + +A ++ Sbjct: 174 YIELQRAGQAGTEAYIQ-QAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDLL 232 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + R R + + Y K + EM ++F+D+P AL NTV+IA+RC+ L++ P LP F + Sbjct: 233 ANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTPD 292 Query: 300 CDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + ++ L + A GLE R L A + +Y RL+FE I +M F GY Sbjct: 293 GMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPGY 348 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMP Sbjct: 349 FLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMP 408 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + Sbjct: 409 DFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVA 468 Query: 477 KLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP P V+L+ A ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 469 KLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIA 528 Query: 536 DRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQ 591 L+ P+Y D V +Q++ +E GL+KFDFLGL TLT+L ++ + L Sbjct: 529 PGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDP 588 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 + S IP D + +L T+ +FQLES GM+ L+ +PD EDIIALV+LYR Sbjct: 589 SKADWNCSHIPLTDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYR 648 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD Sbjct: 649 PGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM + +E F GA+K+G+S A IF+L+ KFA YGFNKSHAAAYA+ Sbjct: 709 LLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYAL 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFKV 830 ++Y TAW+K H+P EF+AA+M+L MD+ +K+K DA N ++++PP +N F Sbjct: 769 LAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFTP 828 Query: 831 GDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D + I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV AG Sbjct: 829 TDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAG 888 Query: 890 ALDCFGYSRMQLLQS--LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 A D +R QLL S L + N+ + + + + ++ E + Sbjct: 889 AFDSLNDNRAQLLVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDE--APWT 946 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + + + E++ LGFY SGH D + +R+ Sbjct: 947 TKRKLQEEKQALGFYLSGHLFDECRDEVRR 976 >gi|319956110|ref|YP_004167373.1| DNA polymerase iii, alpha subunit [Nitratifractor salsuginis DSM 16511] gi|319418514|gb|ADV45624.1| DNA polymerase III, alpha subunit [Nitratifractor salsuginis DSM 16511] Length = 1183 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1048 (38%), Positives = 617/1048 (58%), Gaps = 51/1048 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F HL +H+ YSLL+GA + + K+ A ++A+TD N+F ++F Sbjct: 1 MSEHPRFTHLHLHTEYSLLDGANKIKALAKKVKALGMDSVAMTDHGNMFGTIDFYNTMRK 60 Query: 65 AGIQPIIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++PIIG + + D+L K T Q + L GY+ L+ L S+ YL Sbjct: 61 EGVKPIIGMEAYLHNSDDLGDKSTRQRY-------HLCLYAKNEIGYKNLMYLSSQAYL- 112 Query: 123 DQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPID---------RAFFFNSSQVAEKRLL 172 +G RI L+E +EGLI + G ++ + F + A+K L Sbjct: 113 -KGFYYYPRINKKLLRE-HSEGLICSSACLQGEVNWHLNLSDRNKKFGAGGYEEAKKIAL 170 Query: 173 TFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 +K++FGD Y+ L RH D+ R + Q+++L+ + ++ATN++ + + ED EAH+ Sbjct: 171 EYKEIFGDDFYLELMRHGIGDQQRIDEQIIRLSLETGIKIIATNDTHYTNPEDAEAHEAF 230 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 M +A + +R R + + Y+K+ EM +F+D+PEALENT EIA +C+ +++ P Sbjct: 231 MCIAMNKQYDDPNRLRHSVHEFYVKSPEEMARLFADIPEALENTQEIAEKCNLEIKLGNP 290 Query: 291 ILPRF-IEKECDDIQKEEENE-------------LRNKAVAGLEVRLAQGAIAKGYHAQD 336 P F +E + E E ++A GLE RL + + HA+ Sbjct: 291 TPPNFKFTRERAKLAGLELPEPEEEYSLANDIVLFEHEARKGLEKRLEH--VPEEKHAE- 347 Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 YR+RL+ E+ +I MKF GY LIV DF++ AK+ IPVGPGRGS AGS+ AY+L+ITDID Sbjct: 348 YRERLETEIGIINSMKFPGYMLIVWDFVRAAKEMGIPVGPGRGSAAGSLVAYSLSITDID 407 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 P+ + LLFERFLNP+R+SMPD D+DFCQ RR E+I YV KYG VAQIITFG L AK Sbjct: 408 PIPYGLLFERFLNPERVSMPDIDMDFCQSRRQEIIDYVVEKYGRVNVAQIITFGKLLAKG 467 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEIS 515 +RDV R + +PY+Q D KLIP++ ++L+ A A + + +E DP ++ + Sbjct: 468 VIRDVARVMGLPYAQADAFAKLIPDELG--ITLKDAYAKEPKIKELIERDPKAAQVWRFA 525 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 LEGL R+A THAAG+VI + PL + P+++ + TQ++ K++E LIKFDFLG Sbjct: 526 LALEGLNRNAGTHAAGVVISNEPLWEKTPLFKPTGQETLATQYSGKYVEDVDLIKFDFLG 585 Query: 576 LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 LKTLT ++++L + +R G ++D + +D + Y + T TLG+FQ+ES+GM+ + Sbjct: 586 LKTLTTIEEALQLIEKRHGKRIDFKQVDINDPKVYDYIATGNTLGLFQIESAGMQDLAKK 645 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 ++P EDIIA+++LYRPGP+++ ++ + RK+G+ +I + P ++P+LK T GVI+YQ Sbjct: 646 LKPSSFEDIIAMLALYRPGPMESGMLDDFVERKHGRAEITYMFPELEPILKPTYGVIVYQ 705 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQI Q + G+SL AD++RRAMGKKIKEEMDK K +F GA K G + A +F+L Sbjct: 706 EQVMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDKLKGQFADGAEKKGFDRAKAEELFDL 765 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN K+ ++ + Sbjct: 766 IVKFAGYGFNKSHSAAYAMVTFYTSYLKCYYPTEFMAAQLTLEKDNTTKVVRYVDAVKHM 825 Query: 813 NIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868 I ++PP VN + F G I + L +KG G R I+E+ + PF L DF Sbjct: 826 GIDLLPPDVNRSDLAFIADEIEGRPTILFGLGGVKGAGDVAIRSILESREEGPFRDLSDF 885 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 SR+D+ K+N++V+E+ + AGALD GY+R +L ++ I + A + + ++F Sbjct: 886 ISRIDTAKVNKKVIEAFIKAGALDGLGYTRKAMLTQIEAIMEAASKATQAKKMAENSLFG 945 Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 + ++ L+ + E E+ LGFY SGHPLD Y+ L K+ E Sbjct: 946 AGEEMTHVELELDPMEEFDPLQMLEFEKETLGFYVSGHPLDKYREELAKIDYTLSSEIDE 1005 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 G+ + S +K ++KG++ G Sbjct: 1006 LADGSQALFIGKIESITEKISKKGNKFG 1033 >gi|258514118|ref|YP_003190340.1| DNA polymerase III DnaE [Desulfotomaculum acetoxidans DSM 771] gi|257777823|gb|ACV61717.1| DNA polymerase III, alpha subunit [Desulfotomaculum acetoxidans DSM 771] Length = 1145 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1037 (38%), Positives = 626/1037 (60%), Gaps = 32/1037 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSFVHL VH+ YSLL+GA + ++ K + A+AITD +F ++F + GI+ Sbjct: 2 PSFVHLHVHTEYSLLDGAARIKEVVKKAKSLGMSALAITDHGVMFGVVDFFKACKKEGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 PI+GC++ + + + +TP + +VLL GY+ L+ LVS + +G Sbjct: 62 PILGCEVYVAPR-----SRHDRTPRVDDNLYHLVLLAKNETGYRNLLNLVSISF--TEGF 114 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 + + +EGLI L+G +G + + + A + K+FG D Y+ Sbjct: 115 YYKPRVDKEVLAMYSEGLIALSGCIAGEVAEYILKDLPEQARAAAAEYLKIFGEDNYYLE 174 Query: 186 LQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H ++ + + ++V+++ +PLVATN+ ++++E+ E DVL+ + V Sbjct: 175 IQDHSFPEQKKANRELVKISEELNIPLVATNDVHYVAKENAEMQDVLLCIQTGKTVDDPK 234 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R + + + YLK+ EM +F +LP+AL+NTV IA +C ++ LP + E + Sbjct: 235 RMKFQSQEFYLKSPEEMAELFPELPQALQNTVSIADKCEISMEFGQLHLPFYQVPEGHTV 294 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ LR GL R GA + + RQR++FEL+VI +M +S YFLIV DF Sbjct: 295 ----ESYLRELCEKGLLDRY--GAAPE----ESVRQRMEFELSVIEQMGYSAYFLIVWDF 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +A++N +PVGPGRGS AGS+ +Y L IT++DPL++ LLFERFLNP+R+SMPD DID C Sbjct: 345 IDYARQNGVPVGPGRGSAAGSLVSYVLGITNLDPLKYDLLFERFLNPERVSMPDIDIDIC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR++VI YV KYG ERVAQI TFG++ AK A+RDVGRAL M Y +VDR+ KL+P + Sbjct: 405 YERRNKVIEYVVRKYGAERVAQIATFGTMAAKGAIRDVGRALAMSYGEVDRVAKLVPAE- 463 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 H +A++++ EA +P V RL++ ++ LEG+ RHASTHAAG+VI +PL+ + Sbjct: 464 LHMTIEKALSENQDLLEAYNNEPEVRRLIDTAKGLEGMPRHASTHAAGVVITKQPLTHYL 523 Query: 544 PMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 P+Y+ +D PV TQF + +E+ GL+K D LGL+TLT++ ++ + +R G +D+ I Sbjct: 524 PLYKS--TDGPVTTQFAKEPVEELGLLKMDLLGLRTLTVIADAVAEVNKRAGSPLDIDKI 581 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660 +D T+ LL+ +G+FQLESSGMR L ++P+ EDI+ALV+LYRPGP+ + +V Sbjct: 582 TLEDKNTFDLLSRGEGIGVFQLESSGMRAILRDLKPEVFEDIVALVALYRPGPLGSGMVD 641 Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K+G +K+ +HP+++P+LK+T GVI+YQEQVM+I+ L+G+SL EAD+LRRAMGK Sbjct: 642 DFIKNKHGLQKVSYLHPILEPILKDTYGVILYQEQVMRISSDLAGFSLGEADLLRRAMGK 701 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K E + + +F+ GA+K + +A +F+L+ FA YGFNKSH+AAYA++SYQTA++ Sbjct: 702 KKPEVIAGLRSQFMEGAAKKDVDPEVAGKVFDLMEFFAGYGFNKSHSAAYALVSYQTAYL 761 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP EF+AA +T DN +K+ + ++ R+ I ++PP VN F V ++I + L Sbjct: 762 KANYPAEFMAALLTSVRDNSDKVAVYIEECRRMGIVVLPPDVNESRDGFTVVGDKIRFGL 821 Query: 840 AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AA+K VG I+ PF + DFC+R+D++ +NRRVLESL+ GA D G+ R Sbjct: 822 AAMKNVGLAAVYSIISMREQGGPFKNYADFCNRLDTRVVNRRVLESLIKGGAFDSLGHRR 881 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHEN--IFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 QL+ +D AQ +++R + + F E+ ++ L + S E+ Sbjct: 882 AQLMAVVDTGLSIAQQAQRDRNSGQMSLFEFLEEEEEYNLSFVLPDIAEYLYSEMLALEK 941 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LG Y SGHPL Y+ +LR+ E G + L ++++ +Q T+KG + Sbjct: 942 ESLGLYISGHPLAEYREVLRQNDTVNAGELPDFTEGETVALGGLIINYKQITTKKGDAMA 1001 Query: 1017 WVTFSEPAKEYEANFFP 1033 +V + E FP Sbjct: 1002 FVNLEDLTGVVEVVIFP 1018 >gi|206582064|pdb|3E0D|A Chain A, Insights Into The Replisome From The Crystral Structure Of The Ternary Complex Of The Eubacterial Dna Polymerase Iii Alpha-Subunit gi|206582065|pdb|3E0D|B Chain B, Insights Into The Replisome From The Crystral Structure Of The Ternary Complex Of The Eubacterial Dna Polymerase Iii Alpha-Subunit Length = 1220 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1091 (39%), Positives = 624/1091 (57%), Gaps = 84/1091 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL H+ +SLL GA L ++L K + PA+A+TD NLF A+EF +KA A G++ Sbjct: 7 FAHLHQHTQFSLLNGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + + +GK + LL GYQ L+ L SR YL + + Sbjct: 67 PIIGYEAYVAAESRFD-RKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYL-EGFYEK 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L+E +GLI L+G I + + +AE RL +FGDR ++ +Q Sbjct: 125 PRIDREILRE-HAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEIQN 183 Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + +QV+ + A + L +VATNN ++ +ED AH+VL+A+ T + +R R Sbjct: 184 HGLPEQKKVNQVLKEFARKYGLGMVATNNGHYVRKEDARAHEVLLAIQSKTTLDDPERWR 243 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHAPI---LPRF-- 295 D Y+K EM ++ LPEA +NTVEIAR C L + + +PRF Sbjct: 244 FPCDEFYVKTPEEMRAM---LPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPL 300 Query: 296 ------------------IEKECDDIQK-----------------------EEENELRNK 314 + + D I + E + K Sbjct: 301 PEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEALARVEEK 360 Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374 A L RL + + A+ R +EL+VI RM F GYFLIV D+I WA+ + + V Sbjct: 361 AWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSV 420 Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434 GPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF RD VI+YV Sbjct: 421 GPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYV 480 Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIA 493 + +YG ++VAQI TFGSL +KAAL+DV R +P+ + + L KLIP P LQ A Sbjct: 481 RERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAFE 540 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 + R D + +++E++ +LEGL RHAS HAAG+VI PL+ LVP+ RD + Sbjct: 541 AEPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGR 599 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612 PVTQ++M +E GL+K DFLGL+TLT L ++ + + +GV++D +P DD +T+ LL Sbjct: 600 PVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDPKTFELL 659 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 + T G+FQLES GM + G++P +EDIIALVSLYRPGP+++I Y R +G+E + Sbjct: 660 SRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVS 719 Query: 673 -----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + P+L ET G+ +YQEQ+MQIA ++GYSL EAD+LRRAMGKK EEM K Sbjct: 720 YAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQK 779 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +ERF+ GA + G+ + A +F++L FA+YGFNKSHAAAY+++SYQTA++K HYPVEF Sbjct: 780 HRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEF 839 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 +AA +++E + +K+ ++ +DAR I ++PP VN DFKV I + L+A+K VG Sbjct: 840 MAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGE 899 Query: 848 TTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 AR I+E PF SL DF R+ + +N+R LESLV AGALD FG R +LL SL+ Sbjct: 900 MAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-DRARLLASLE 958 Query: 907 NIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + ++A + + +FA E+ + L++ ++ +R+E E LG Y SG Sbjct: 959 PLLRWAAETRERGRSGLVGLFAEVEEPPLVEASPLDEITM----LRYEKE--ALGIYVSG 1012 Query: 966 HPLDVYKPILRKMG---IKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 HP+ Y P LR++ I+ E V + G + L+ MV +K TR G + T S Sbjct: 1013 HPVLRY-PGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMARFTLS 1071 Query: 1022 EPAKEYEANFF 1032 + E F Sbjct: 1072 DETGALEVVVF 1082 >gi|94969774|ref|YP_591822.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis Ellin345] gi|94551824|gb|ABF41748.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis Ellin345] Length = 1159 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1031 (38%), Positives = 617/1031 (59%), Gaps = 27/1031 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +H+ YS+L+GA + ++ ++ QPA+A+TD N++ A+ F A G++ Sbjct: 3 PEFVHLHLHTDYSMLDGASDVEKLVARVKELGQPAVAMTDHGNIYGAVHFQNAAKEKGVK 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127 I+GC+L I ++N + +G +++L EGY+ L+++VS L G Sbjct: 63 AILGCELYICQKENHREAPEGDK----YNHLIVLAENEEGYRNLVKIVSEASL--HGFYY 116 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ ++L E ++GLI L+ G + + A+K TF +FG + Y+ + Sbjct: 117 KPRVSKNFLAE-HSKGLIGLSACLKGEVAERLTEGKYEAAKKAATTFGDIFGANNFYLEI 175 Query: 187 QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q + R Q + L P+VATN+S +L E+D A DV++ + + +R Sbjct: 176 QDQGLEEEKRIHQGLFDLEKDLGYPMVATNDSHYLCEDDSHAQDVMVCIQTGKSIHDTNR 235 Query: 246 PRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + + + + +K+ EM +F+ L T+EIA RC+ L+ PRF E I Sbjct: 236 MKFSTNQFFVKSAHEMSQVFTGADRVLARTMEIAERCNVKLEKVKNPFPRFDVPEGMSID 295 Query: 305 KEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ R + + R Q A + +Y +RL+FE++ I +M+F GYFLIV DF Sbjct: 296 SYFEDVARRGMAKRMNLMRDLQSAGRLRHTFAEYEERLNFEIDTIKKMQFPGYFLIVWDF 355 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A++NNIPVGPGRGS AGS+ AYA+TITD+DPL+ +LLF+RFLNP+R+SMPD D+DFC Sbjct: 356 IRYARENNIPVGPGRGSAAGSLVAYAMTITDVDPLQNNLLFQRFLNPERISMPDIDVDFC 415 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI+YV KYG ++VAQIITFG++ AKAA++D GRA+ +PY++VDR+ K++P Sbjct: 416 MNRRGEVIKYVTEKYGRDQVAQIITFGTMAAKAAIKDCGRAMDIPYAEVDRVAKMVPTTI 475 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + A+ D A ++P V L++ +++LEGL R++ HA+ +VI +PL+ LV Sbjct: 476 NITID-GALKDSPMLATAYESEPQVKELIDTAKRLEGLVRNSGVHASAVVIAPQPLTDLV 534 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+++ ++D VT ++MK +EK GL+K DFLGL TLT+L +L + Q +GVK++L +P Sbjct: 535 PLHK-TKNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTILDDALKLIDQTQGVKIELEKLP 593 Query: 603 FDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660 FDD +TY + G T G+FQ ESSGMR L +PD +ED+ AL +LYRPGPI ++ Sbjct: 594 FDDKQTYERIFHSGYTSGVFQFESSGMRDVLRKYKPDTVEDLTALNALYRPGPIQGGMID 653 Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + NRK G+ K+ H + +L ET GVI+YQEQVMQIA L+GYSL +AD+LRRAMGK Sbjct: 654 DFINRKWGRAKVDYFHDDLKTILVETLGVIVYQEQVMQIANKLAGYSLGDADLLRRAMGK 713 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K +EM+KQ++RF GA G K + V+IF+L+ +FA YGFNKSH+AAYA+++Y TA++ Sbjct: 714 KDAKEMEKQRDRFTKGAIDRGYDKQLTVHIFDLMEQFAGYGFNKSHSAAYALLAYHTAYL 773 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 KTH+P+EF+AA +T + + + K+ + R I++ PP VN F I + L Sbjct: 774 KTHFPIEFMAALLTSVSGSTDDVVKYINECRDMGIEVRPPDVNVSLASFTPDQGAIRFGL 833 Query: 840 AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 +AIK +G I+ A A F S +FC +VD + LN+RV+ESL+ +GA+D G R Sbjct: 834 SAIKNLGHNAIESIVTARQAIGKFSSFFEFCEKVDLRLLNKRVVESLIKSGAMDPLG-RR 892 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKI-TLEKFSVENSSVRFENE 955 QL +D + AQ +++ + +F E+ K+ +L + R NE Sbjct: 893 SQLFAVIDKAMEAAQKTQRDAESGQHGLFGVFDEEPVAGKKVDSLPNVPDWDEHQRLANE 952 Query: 956 QRVLGFYFSGHPLDVYKPIL---RKMGIKGYEE-SVATIRGNNIRLAAMVVSKQQKKTRK 1011 + +LGF+ +GHP++ YK L R M + + +T +G + ++ + K++K Sbjct: 953 KEILGFFITGHPMEKYKDKLADFRAMSTEDLKNMRTSTAKGEEYYVGGVMSGVKVAKSKK 1012 Query: 1012 GSRIGWVTFSE 1022 G T + Sbjct: 1013 GDMYALGTLED 1023 >gi|237747737|ref|ZP_04578217.1| DNA polymerase III alpha subunit [Oxalobacter formigenes OXCC13] gi|229379099|gb|EEO29190.1| DNA polymerase III alpha subunit [Oxalobacter formigenes OXCC13] Length = 1153 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/995 (41%), Positives = 601/995 (60%), Gaps = 48/995 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++HS YS+++G + + +++ A D QPA+A+TD NLF ++F + A G++PI Sbjct: 6 FVHLRLHSEYSIVDGLVRIEDVIAAAAKDGQPAMALTDLANLFGLIKFYKAARKKGVKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 GC ++ +TN P+ ++LLV GY L EL+SR +L +Q + Sbjct: 66 GGC--------DVWITNDADREKPS--RLLLLVKDRTGYLNLCELLSRSWLENQWRGRAE 115 Query: 131 ICLSWLQEI----GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I + WL+E+ G GLI L+G G I AF + AEK + +F D Y+ + Sbjct: 116 IRIEWLEELSKKTGDMGLIALSGAKQGDIGMAFEASGFDNAEKCARRWASIFPDNFYIEI 175 Query: 187 QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 QR H G ++Y V+LA +LP+VAT+ FLS+E++ AH+ ++ ++S K Sbjct: 176 QRTGHSGMEQYLR-HAVELADKLQLPVVATHPVQFLSQEEFAAHEARTCISEGEILSNKR 234 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R Y + EM +F+DLP A++N+VEIARRC+ +L++ LP F D + Sbjct: 235 RAHNFNERQYFYTQEEMAELFADLPGAIQNSVEIARRCNLVLELGHHKLPEF--PTPDGM 292 Query: 304 QKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 +E L ++A GLE RL + + Y +RLD+E+ I M FSGYFLIV Sbjct: 293 TLDEF--LTSEAKHGLEKRLEELFPDEEERKTQRPRYDERLDYEIGTIINMGFSGYFLIV 350 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI+WAK N +PVGPGRGSGAGS+ AY+L IT++DPL ++L+FERFLNP+R+SMPDFD+ Sbjct: 351 ADFIRWAKNNGVPVGPGRGSGAGSLVAYSLLITNLDPLAYNLIFERFLNPERVSMPDFDV 410 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ RD+VI+YV+++YG + V+QI TFG++ AKAA+RDVGR L + Y+ D + KLIP Sbjct: 411 DFCQHGRDKVIQYVKDRYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDGISKLIP 470 Query: 481 NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P V++ +A ++ E ++ V +LL +++++EG+ R+ HA G++I L Sbjct: 471 FKPGKQVTIAEAKKEEPLLAEREESEEEVKQLLALAEQVEGITRNVGMHAGGVLIAPGKL 530 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKV 596 + P+Y V+ F+ +E GL+KFDFLGL TLT+L ++ ++ Q Sbjct: 531 TDFCPLYTQGGEAGVVSHFDKSDVEAVGLVKFDFLGLTTLTILDLAVKYIRQLDPEMANF 590 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 +L IP DD TY LL T+ +FQLES GM+ L+ +PD EDIIALV+LYRPGP+D Sbjct: 591 NLDTIPLDDKATYDLLIKAKTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMD 650 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + RK+G EK +L ET G+++YQEQVMQ+AQ++ GY+L AD+LRRA Sbjct: 651 LIPDFCRRKHG-EKFEYPDERTKGILSETYGIMVYQEQVMQMAQVIGGYTLGGADLLRRA 709 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EM + ++ F GA+KN +++ A IF+L+ KFA YGFNKSHAAAYA++SYQT Sbjct: 710 MGKKDANEMARHRQIFRDGAAKNDLTEAKADEIFDLMEKFAGYGFNKSHAAAYALLSYQT 769 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDFK-VGD-- 832 A++K H+ F+AA+M+L MD+ +K+K +DA + + I+PP +N F VG+ Sbjct: 770 AFLKQHHAAAFMAANMSLAMDDTDKVKVLVEDAVEVCGLTILPPDINHSEYYFTPVGEAP 829 Query: 833 -------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 + I Y L A+KG G + I++A ++PF L DFC RVD ++NRR +ESL Sbjct: 830 SVSKKPVSAIRYGLGAVKGSGESAIEAIVKARKERPFTDLFDFCMRVDKHQINRRTIESL 889 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGA DCF R LL S+D + A + N+ ++F E+ + T+E V Sbjct: 890 IRAGAFDCFNVDRAVLLASVD-LAIEAAEQAEASANQ-VSLFGEEEAVIN---TVEYVQV 944 Query: 946 ENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + + E+ VLGF SGH + Y R+ Sbjct: 945 PHWTEKHKLTEEKGVLGFCLSGHLFNAYAAEARQF 979 >gi|295675964|ref|YP_003604488.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002] gi|295435807|gb|ADG14977.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002] Length = 1196 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1022 (39%), Positives = 612/1022 (59%), Gaps = 40/1022 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A G++ Sbjct: 7 PRFVHLRVHSEFSIADGIVRLDDIVAAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ L +Q + Sbjct: 67 PIAGC--------DVWITNPDDRDKPS--RLLLLVKDRRGYLNLCELLSKASLTNQYRGR 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL+ EGL+ L+G G I A + + A++ + K+F Y+ LQR Sbjct: 117 AEIEAGWLETGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNARHWAKVFPGGFYIELQR 176 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G ++Y + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ R Sbjct: 177 YGQPGGEQYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQ 235 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + Y + + EM ++F+D+P AL NTV+IA+RC+ L++ P LP F + + Sbjct: 236 KRFTSEQYFRTQQEMATLFADIPSALANTVQIAKRCNLTLELGKPKLPLFPTPDGMSL-- 293 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y QRL+FE I +M F GYFLIVAD Sbjct: 294 --DDYLVQLSKEGLEKRLEQLYPDEAERDAQRPTYYQRLEFECGTIIKMGFPGYFLIVAD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 412 CQHGRDRVIQYVKEKYGANAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 471 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LLE++Q++EGL R+ HA G++I L+ Sbjct: 472 PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 532 FCPLYTQGDDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSL 591 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPGP+D I Sbjct: 592 GQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 652 PSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM + +E F GA++NG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 712 KKKPEEMAQHREIFAEGAARNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNR- 834 +K H+P EF+AA+M+L MD+ +K+K +D + ++PP VN F+ D + Sbjct: 772 LKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAEADGKR 831 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A D F + DFC+RVD + +NRR +E+L+ AGA Sbjct: 832 SRTIRYGLGAIKGSGQNAIEEILRAREDGRFIDIFDFCNRVDRRIVNRRTIEALIRAGAF 891 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QL+ S+ + A+ N + + ++ + + Sbjct: 892 DTLHANRAQLIASVSLAMEAAEQAAANALQAGLFDMGDAPSQGHELVDEPEWPEKR---K 948 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D YK +R+ + + ++ G + +A ++VS + + T+ Sbjct: 949 LQEEKAALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAGVIVSLRTQMTQ 1004 Query: 1011 KG 1012 +G Sbjct: 1005 RG 1006 >gi|225025259|ref|ZP_03714451.1| hypothetical protein EIKCOROL_02156 [Eikenella corrodens ATCC 23834] gi|224942017|gb|EEG23226.1| hypothetical protein EIKCOROL_02156 [Eikenella corrodens ATCC 23834] Length = 1143 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1047 (39%), Positives = 613/1047 (58%), Gaps = 64/1047 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P ++ L+ H+ +S+ +G L + ++ K +A PA+ I+D N F ++F + AGI Sbjct: 3 APVYIPLRQHTEFSITDGTLRIKELVKKASAFGLPALGISDLMNTFGLVKFYKACRGAGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGK 126 +P++G + + +N + PF +LLV GY+RL EL++R Y+ D+ Sbjct: 63 KPVVGADVWVANPENPEQ------PF----RAMLLVRNEAGYRRLCELLTRAYVGTDRNV 112 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + WL E G EGLI L+G G + R A + + F D Y+ L Sbjct: 113 AHAELEPQWLAEGGNEGLICLSGAHLGEVGRQLMNGHDSAACAAAQKYAQWFPDAFYLEL 172 Query: 187 QRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 QR + S ++LA LP+VAT+ + FL+ +D++AHD + +A V++ K Sbjct: 173 QRLPEKPEWETSVSGSLKLAAELGLPVVATHPAQFLNPDDFKAHDARVCIAGGWVLADKR 232 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR Y + E+ + F+DLPEAL+NTVEIA+RC+ L + LP+F + + Sbjct: 233 RPRDFVAGQYFASPEEVAARFADLPEALQNTVEIAKRCNLTLTLGKNFLPQFPTPDGMSL 292 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIV 360 ++ L + + GL RLA + Q +Y+ RLDFEL I +M F GYFLIV Sbjct: 293 ----DDYLAHLSNQGLRERLAALYPDEAEREQKLPEYQARLDFELGTIVQMGFPGYFLIV 348 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI WAK N PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDI Sbjct: 349 ADFINWAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLRYALLFERFLNPERVSMPDFDI 408 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+ R VI YV+ KYG E V+QI+TFG+L +KA +RDVGR L++P+ DRL KLIP Sbjct: 409 DFCQNNRGRVIEYVRQKYGFEAVSQIVTFGTLSSKAVIRDVGRVLELPFGVCDRLSKLIP 468 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRL---------LEISQKLEGLYRHASTHAAG 531 + P+SL+ +A A+P + ++ +E+++KLE L R HA G Sbjct: 469 LEANKPLSLE---------KAMEAEPEIAKVLEEEEAEELMELAKKLEDLTRGLGMHAGG 519 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + +F+AQ Sbjct: 520 VLIAPGKISDFCPVYQADESASPVSMYDKGDVEDIGLVKFDFLGLRNLTIIEMAQEFIAQ 579 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 G ++D++ I D + Y + T +FQ ES+GM++ L +E+IIA VSLY Sbjct: 580 TTGERIDVNHIDLTDQQAYEVFRKANTTAVFQFESTGMKKMLAQANTTKLEEIIAFVSLY 639 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + R G + +H L++P+L+ T G+++YQEQVMQ AQ++ GYSL A Sbjct: 640 RPGPMDLIPDFIARMKGA-RFEYMHLLLEPVLQPTYGIMVYQEQVMQAAQVIGGYSLGGA 698 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM K +E F GA+K GI++ A IF+ + KFA YGFNKSHAAAYA Sbjct: 699 DLLRRAMGKKKPEEMAKHREIFAEGAAKQGIAREKADEIFDYMEKFAGYGFNKSHAAAYA 758 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +++YQTAW+K HYP EF+AA+M+ E+DN +++K F DAR I+ +PP VN F+ Sbjct: 759 LVAYQTAWLKAHYPAEFMAATMSSELDNTDQLKLFYDDARDNGIRFLPPDVNHSGYHFQP 818 Query: 831 -GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +RI Y+L AIKG G I+ A + F SL DFC RV + +NRR +E+LV Sbjct: 819 DAQHRIRYALGAIKGTGEAAVEAIVAAREEGGAFKSLFDFCERVSRQHINRRTIEALVRG 878 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKIT-LEKFS 944 GA D +R +LL ++D A+ E+N A++ G F D I LE Sbjct: 879 GAFDSIEPNRARLLANIDLAMSNAEQQEEN---------ANQGGLFDMVEDAIAPLEMID 929 Query: 945 VE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMV 1001 V + E++ +GFYFSGHP + +R+ ++ ++ N N+R+A Sbjct: 930 VPAWGEAELLAEEKQAIGFYFSGHPFGPAEKEVRQFA----PTRLSQLKPNDNVRVAGFA 985 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++G +I ++T + + E Sbjct: 986 TAIRSMVGKRG-KIAFITLEDTGGKAE 1011 >gi|167771346|ref|ZP_02443399.1| hypothetical protein ANACOL_02712 [Anaerotruncus colihominis DSM 17241] gi|167665986|gb|EDS10116.1| hypothetical protein ANACOL_02712 [Anaerotruncus colihominis DSM 17241] Length = 1175 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1037 (38%), Positives = 604/1037 (58%), Gaps = 34/1037 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+GA + +++++ A Q A+AITD +F A++F + A G++PI Sbjct: 14 FAHLHVHTEYSLLDGACRIERLIERVKALGQSAVAITDHGVMFGAVDFYKCAKKHGVKPI 73 Query: 71 IGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS- 128 IGC++ + + ++ T P+ ++LL GYQ LI++VS ++ +G S Sbjct: 74 IGCEVYVAPRSRFDKQHKIDTSPY----HLILLCKNETGYQNLIKMVSAGFV--EGFYSK 127 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI + L++ EGLI L+ +G I R A++ + ++ LFG D Y+ +Q Sbjct: 128 PRIDRALLEQY-HEGLICLSACLAGEIPRMLAQGDYACAKETAVWYRDLFGADNYYIEIQ 186 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKD 244 H G ++ +V+LA + LVATN++ ++ + D VL+ + ++TV + D Sbjct: 187 NH-GIRLQQQILPDLVRLAGEIGVGLVATNDAHYIEKADARMQSVLICIQTNTTVDAPGD 245 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 T + Y+K+R EM +F + P AL+NT++IA +C+ + LP F+ +D Q Sbjct: 246 LEFETEEFYIKSRDEMDELFGNYPGALDNTLKIAEQCNVEFEFGNTKLPLFVAPNGEDNQ 305 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 R GL R + + +RL++ELN+I +M + Y+LIV+DFI Sbjct: 306 AY----FRRLCAEGLRRRYGEQP------DRSVTERLEYELNIITKMGYVDYYLIVSDFI 355 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +AK IPVGPGRGSGAGS+ AY + IT IDPLR+SLLFERFLNP+R+SMPDFDIDFC Sbjct: 356 NYAKSVGIPVGPGRGSGAGSLAAYCIGITGIDPLRYSLLFERFLNPERISMPDFDIDFCY 415 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV KYG + VAQIITFG++ A+ A+RDVGR L M Y QVD + KL+PN+ Sbjct: 416 ERRQEVIDYVVRKYGADHVAQIITFGTMAARGAIRDVGRVLGMSYQQVDSIAKLVPNELK 475 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+A + + D V LL++++K+EG+ RHASTHAAG+VI P+ VP Sbjct: 476 MTLD-KALAVSADLKTMCAEDKRVAELLDMARKIEGMPRHASTHAAGVVITRDPVDSYVP 534 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 +Y+ +PVTQF M +E+ GL+K DFLGL+TLT++ + A+ +P D Sbjct: 535 LYK-AEETMPVTQFTMTTLEELGLLKMDFLGLRTLTVISYAEKEAAKTHPGFSADAVPLD 593 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D ET+ +LT +G+FQ ES+GMR + + P IED+IA++SLYRPGP+++I Y Sbjct: 594 DPETFAMLTKGQCVGVFQFESAGMRAVIAQLGPTSIEDLIAVISLYRPGPMESIPTYIRN 653 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ E + HPL+ P+L T G I+YQEQVMQI + L GYS AD++RRAM KK + Sbjct: 654 RHNPELVTYKHPLLKPILDVTYGCIVYQEQVMQICRALGGYSYGRADLVRRAMSKKKHDV 713 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M+K++E F++GA +NG+++ A IF+ ++ FA Y FNKSHAAAYA +SYQTA++K HYP Sbjct: 714 MEKEREAFVAGAQQNGVARETANQIFDEMSSFASYAFNKSHAAAYAFVSYQTAYLKCHYP 773 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA +T +DN +K+ ++ + + I+++PP VN F V I + L A+K Sbjct: 774 REFMAALLTSVLDNTDKVIEYIGECNRMGIKVLPPDVNVSVEGFTVSGEEIRFGLLAVKN 833 Query: 845 VGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 +G R I E + F + DFC R+ K +N+R +ESL+ +GALDC +R Q+L Sbjct: 834 IGRGFIRELIAERESGGVFQNFSDFCERMYGKDMNKRAVESLIKSGALDCVCKNRNQMLS 893 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 + I +K N+F G L S E+ G Y Sbjct: 894 GYEAILDDIDSAQKRNIAGQINLFDTAAGASKPIHILPNVEELEPSKLLAMEKETTGLYI 953 Query: 964 SGHPLDVYKPILRK------MGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIG 1016 SGHP+ ++ ++ K I EE + + G +R+AA+V S++ K TR G + Sbjct: 954 SGHPMARFQEMVSKNNCTLIADITSAEERGSGVADGTQVRVAAIVNSRRLKSTRGGEMMA 1013 Query: 1017 WVTFSEPAKEYEANFFP 1033 +V + + E FP Sbjct: 1014 FVRLEDTSGSMEMLVFP 1030 >gi|220918685|ref|YP_002493989.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219956539|gb|ACL66923.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 1210 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1080 (38%), Positives = 626/1080 (57%), Gaps = 84/1080 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +H+ YSLL+GA+ + ++L + A ++A+TD NLF A++F +KA AG++ Sbjct: 2 PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 PI+G + + D + G+ ++LL AEG+ L L S+ + + Sbjct: 62 PILGMEAYVAGDKGRTDRSERIGR-------HLILLAKNAEGWANLRYLSSKAFT-EGFY 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 RI L++ ++GL+ LT +G + R A + ++ +F ++ Sbjct: 114 YDPRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLE 172 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q + ++ +++ QL +PLV T ++ ++S ++ +AH+VLM +A + Sbjct: 173 VQSNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPK 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R D ++ EM + D EAL+NT+ IA C+ L + LP F E Sbjct: 233 RLRHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEG--- 289 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVAD 362 E++ + A GL+ R + K H +D YRQRL+ EL VI +M F GYFLIV D Sbjct: 290 -MSEDDYIDKLAREGLDRRFRE-IDGKYPHDRDVYRQRLEMELGVIKKMGFPGYFLIVQD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 348 FINWAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWHLLFERFLNPERVSMPDFDVDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P D Sbjct: 408 CQNRRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVP-D 466 Query: 483 PAH----PVSLQAIADDSRFREARLAD----PSV----------------DRLLEISQKL 518 P P+ D E RL + P+V LL+I+ L Sbjct: 467 PVQGKTPPLKELVFGSDKMPAEPRLKELHDKPAVISQWVDDKGVQNKVTTKDLLDIAMSL 526 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R A HAAG+VI D+PL + VP Y+D +S++ V+QF + +E AGL+KFDFLGLKT Sbjct: 527 EGLNRQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKT 586 Query: 579 LTLLQKSLDFLAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 LT++ +L + + ++ S IP DD Y L++ T G+FQ+ESSG + + M Sbjct: 587 LTVIDDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKM 646 Query: 636 QPDCIEDIIALVSLYRPGPIDN--------IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 +P ED+IA +LYRPGP+D + VY +RK+G+EK+ HP ++ +L+ T G Sbjct: 647 KPSRFEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHPSLEKVLEPTYG 706 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 VI+YQEQVMQI+Q+L+GYSL +AD+LRRAMGKK E M K++ F++GA NG+ + +A Sbjct: 707 VIVYQEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDEKVAG 766 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 IF+L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E N +K+ Sbjct: 767 GIFDLMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHIS 826 Query: 808 DARQFNIQIMPPSVNTPCVDF----------KVGDNRIYYSLAAIKGVGTTTARHIMEAS 857 +AR ++++PP VN F K RI + L A++GVG + + I+EA Sbjct: 827 EARASQLEVLPPDVNESDAAFGAFPPGPESPKGSRGRIRFGLGAVRGVGESAVQAIVEAR 886 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 A PF SL D RVDSKK+N++VLE+LV +GALD G R QL +D + Sbjct: 887 ASGPFKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAISAGASAQA 946 Query: 918 NRTNKHENIFAH--------------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +R + ++F G ++T+E++ VR E+ LGFY Sbjct: 947 DRASGQASLFGALAASAATEAKPRYPRPGDAVGEVTVEEWP---ERVRLAFEKEALGFYL 1003 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSE 1022 +GHPL Y+ +R+ G+ + + +V S +++ + KG+R G++T + Sbjct: 1004 TGHPLMGYEREVRRYASSTCAAVAQKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLED 1063 >gi|269469110|gb|EEZ80658.1| DNA polymerase III, alpha subunit [uncultured SUP05 cluster bacterium] Length = 1150 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1050 (39%), Positives = 621/1050 (59%), Gaps = 54/1050 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS YS+ + + ++DK AIA+TD NLF+A++F QK+ + GI+PI Sbjct: 6 FVHLHCHSEYSVKNSLIRIPKLIDKTKDLGMKAIALTDVGNLFAAVKFYQKSISNGIKPI 65 Query: 71 IGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 G +L + D N S++LL +GY L EL+S YL Q + V Sbjct: 66 FGAELTVKDKAQNF--------------SVLLLCQDRQGYANLSELISLSYLHGQSVEGV 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I L +GLIM+ + + N + A +++ + +F DR Y+++QR Sbjct: 112 SITTEQLVN-HHQGLIMIAPHTRSDVAHHLMANQALEAREKVQFWASVFTDRFYLSVQRT 170 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R D ++L +PLVATN+ FL DY+AH+ + ++ ++ R + Sbjct: 171 GRANDEKYLHLCLELGLESGIPLVATNDVEFLVASDYQAHEARICISQGKLLDDARREKF 230 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP-ILPRFIEKECDDIQKE 306 + + YLK+ EM ++FSDLP+ L N+VEIA+RC+ ++H LP F E I + Sbjct: 231 YSAEQYLKSADEMAALFSDLPQLLANSVEIAKRCNLHFELHKKNYLPNFPVPEGLSIAQF 290 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E E + AGL RL + + + Y +RL FEL VI +M F GYFLIVADFI W Sbjct: 291 FEQESK----AGLGKRLEKIKANR----KIYDERLTFELGVIVQMDFPGYFLIVADFIAW 342 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 ++ N+IPVGPGRGSGAGS+ AYAL IT++DP++ LLFERFLNP+R+SMPDFDIDFC DR Sbjct: 343 SRNNDIPVGPGRGSGAGSLVAYALGITNVDPIKHELLFERFLNPERVSMPDFDIDFCTDR 402 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV KYG E+V+QIIT+G + AK +RDVGR L PY DR+ K IPND Sbjct: 403 RDEVITYVAKKYGQEKVSQIITYGKMAAKGVVRDVGRVLGHPYGFSDRISKSIPNDLKIN 462 Query: 487 VSLQAIA---------DDSRFREARL-----ADPSVDRLLEISQKLEGLYRHASTHAAGI 532 +S +A+ D ++ L ++ SV L+++S +LEGL R+ THA G+ Sbjct: 463 LS-RALGIFDQKDSKEDKDKWYSEELKQRYDSEESVTALIDLSLELEGLVRNVGTHAGGV 521 Query: 533 VIGDRPLSQLVPMYRDV-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +I +S P+Y+ SD V+QF+MK +E GL+KFDFLGL LT++ K++ + Sbjct: 522 LIAPSKISDFCPIYKGPGESDGVVSQFDMKDVEALGLVKFDFLGLSNLTVIDKTVKMIHA 581 Query: 592 RGVK---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 +G+ +D+ + DD Y LL T GIFQLES GMR L+ ++ D EDI+A+++ Sbjct: 582 KGLSDELIDIDALSLDDKAVYKLLQRSDTTGIFQLESDGMRGYLKKLKADSFEDIVAMLA 641 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+ +V Y N K+G++ HP+++ +LK T GV +YQEQVM+ AQ+++GYS Sbjct: 642 LYRPGPLGAGMVDDYINVKHGEDAKYP-HPMLEEILKPTNGVFLYQEQVMKSAQVMAGYS 700 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKKI EM+KQ++ F+ GA+K I K A IF+L+ KF+ YGFNKSH+ Sbjct: 701 LGGADLLRRAMGKKIASEMEKQRDVFVKGAAKKKIKKEKANEIFDLIDKFSGYGFNKSHS 760 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AYA ISYQTAW+K HYP F+A+ ++ +MD+ +KI + + + + P+V Sbjct: 761 VAYAYISYQTAWLKAHYPAAFMASVLSDKMDDTDKIAFTIGEVQNMGLIVNGPNVCESDY 820 Query: 827 DFKVGDNR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLES 884 +F + D++ I Y L AIKGVG + ++ E A + L +FC+R++ K LN+R +E+ Sbjct: 821 EFSIKDDKTIVYGLGAIKGVGEALVQTLVAEREAGGEYKDLFEFCARIEKKSLNKRAIEA 880 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+++GA D FG R LL++ K A+ + ++TN +F + +++ + Sbjct: 881 LIYSGAFDVFGVDRASLLKTYPKAVKQAEQRQNDQTNGQNTLFNSIQEHAEYELSYDPCP 940 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVS 1003 + R + E+ V+G+YF HP D YK L+++G+ +++V +R N +R+ A++ Sbjct: 941 RFSFKERLKLEKSVMGYYFYDHPTDEYKDDLKRIGVTLPKDTV--LRNNKEVRVLALISE 998 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + TR G ++ + + + + A FP Sbjct: 999 LRYITTRSGDQMASIIIEDGSTKLSAVIFP 1028 >gi|237745551|ref|ZP_04576031.1| DNA polymerase III [Oxalobacter formigenes HOxBLS] gi|229376902|gb|EEO26993.1| DNA polymerase III [Oxalobacter formigenes HOxBLS] Length = 1153 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1048 (39%), Positives = 618/1048 (58%), Gaps = 41/1048 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K+ SFVHL++HS YS+++G + +++++ A D QPA+A+TD +NLF ++F + A G Sbjct: 2 KNTSFVHLRLHSEYSIVDGLVRIDDVVGAAAKDGQPALALTDLSNLFGLIKFYKAARKKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PI GC ++ +TN P+ ++LLV GY L EL+SR +L +Q + Sbjct: 62 VKPIAGC--------DVWITNDVDREKPS--RLLLLVKDRRGYLNLCELLSRAWLENQYR 111 Query: 127 QSVRICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 I + WL+E+ GLI L+G G I A + A+K L + +F Sbjct: 112 GRAEIRIEWLEELARRDSETGLIALSGAKQGDIGMALDSTGFENAKKCALRWAGIFPGNF 171 Query: 183 YVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ +QR G ++Y Q +LA +LP+VAT+ FLS + + AH+ ++ V+ Sbjct: 172 YIEIQRTGQLGMEQYVR-QAAELAEKLQLPVVATHPVQFLSPDQFRAHEARTCISEGEVL 230 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 S K R R+ +H +++EM +F+DLP AL+N VEIARRC+ +L++ LP F + Sbjct: 231 SNKKRARLFNEHQCFLSQTEMAQLFADLPGALQNAVEIARRCNLVLELGHHKLPLFPTPD 290 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + E+E R+ LEV K Y +RL++E+ I M FSGYFLI Sbjct: 291 GMTLDEFLESEARHGLEKRLEVLFPDEEERKARRPV-YDERLNYEIQTIINMGFSGYFLI 349 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI+WAK N +PVGPGRGSGAGS+ AY+L IT++DP+ ++L+FERFLNP+R+SMPDFD Sbjct: 350 VADFIRWAKNNGVPVGPGRGSGAGSLVAYSLLITNLDPIAYNLIFERFLNPERVSMPDFD 409 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ +YG + V+QI TFG++ AKAA+RDVGR L + Y+ D + KLI Sbjct: 410 IDFCQHGRDRVIQYVKERYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDGISKLI 469 Query: 480 PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ A ++ E ++ V +LL +++++EG+ R+ HA G++I Sbjct: 470 PFKPGKQVTIADAKKEEPLLAEREQSEEEVKQLLGLAEQVEGITRNVGMHAGGVLIAPGK 529 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596 L+ P+Y V+QF+ K +E+ GL+KFDFLGL TLT+L ++ ++ Q + Sbjct: 530 LTDFCPLYTQDGESGVVSQFDKKDVEEIGLVKFDFLGLTTLTILDLAVKYIHQLDPAMSG 589 Query: 597 -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +L IP +D ET+ LLT T+ +FQLES GM+ L+ +PD EDIIALV+LYRPGP+ Sbjct: 590 FELDTIPLNDKETFDLLTRAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPM 649 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G E +L ET G++IYQEQVMQ+AQ++ GY+L AD+LRR Sbjct: 650 DLIPDFCRRKHG-EAFEYPDERAKDILSETYGIMIYQEQVMQMAQVIGGYTLGGADLLRR 708 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM + ++ F GA+KN + + A IF+L+ KFA YGFNKSHA AYA++SYQ Sbjct: 709 AMGKKDAAEMARHRQIFRDGAAKNNLPEAKADEIFDLMEKFAGYGFNKSHATAYALLSYQ 768 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDFK-VGD- 832 TA++K H+ F+AA+M+L MD+ +K++ +DA ++I+PP +N+ FK VG+ Sbjct: 769 TAYLKKHHAAAFMAANMSLAMDDTDKVRVLVEDAVDVCGLEILPPDINSSDFYFKPVGEP 828 Query: 833 --------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 +I Y L A+KG G + I++A ++PF L DFC RVD +++NRR +ES Sbjct: 829 PSVSKKPVTQIRYGLGAVKGSGESAIEAIVQARKERPFRDLFDFCVRVDKRQINRRTIES 888 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ AGA DCF R LL S+ + A + N+ ++F E T + + + Sbjct: 889 LIRAGAFDCFKEDRAVLLASV-GLAIEAAEQAEASANQ-VSLFGEED-TVLNAVEYVRVP 945 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 R E+ VLGF SGH Y R+ E A+ R A +V+ Sbjct: 946 HWTEKSRLTEEKGVLGFCLSGHLFHAYAGEARQFAKSRISELEAS---REPRWVAGIVAG 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + + ++ V+ + + E F Sbjct: 1003 TRAQMSQRGKMMVVSLDDGSATIEVTVF 1030 >gi|209517596|ref|ZP_03266435.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160] gi|209502009|gb|EEA02026.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160] Length = 1189 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1022 (40%), Positives = 610/1022 (59%), Gaps = 40/1022 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F Q+A G++ Sbjct: 7 PRFVHLRVHSEFSIADGIVRLDDIVAAAAKDGQGALALTDLGNAFGLVRFYQEARGKGVK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P+ ++LLV GY L EL+S+ L +Q + Sbjct: 67 PIAGC--------DVWITNPDDRDKPS--RLLLLVKDRRGYLNLCELLSKASLTNQYRGR 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL+ EGL+ L+G G I A + + A + + K+F Y+ LQR Sbjct: 117 AEVEAGWLESGLGEGLLALSGAQQGDIGLALAAGNEEAARRNARHWAKVFPGGFYIELQR 176 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 G ++Y + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ R Sbjct: 177 CGLPGGEQYVQ-QAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQ 235 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + Y +++ EM +F+D+P AL NTV+IA+RC+ L++ P LP F + + Sbjct: 236 KRFTAEQYFRSQQEMAELFADIPSALANTVQIAKRCNLKLELGKPKLPLFPTPDGMSL-- 293 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RLAQ + Y QRL+FE I +M F GYFLIVAD Sbjct: 294 --DDYLVQLSKEGLEKRLAQLYPDEAERDAQRATYYQRLEFECGTIIKMGFPGYFLIVAD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 412 CQHGRDRVIQYVKEKYGANAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFK 471 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LLE++Q++EGL R+ HA G++I L+ Sbjct: 472 PGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTD 531 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + K D SL Sbjct: 532 FCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSL 591 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPGP+D I Sbjct: 592 GQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLI 651 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 652 PSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 711 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+ NG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 712 KKKPEEMAKHREIFAEGAAVNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 771 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN---- 833 +K H+P EF+AA+M+L MD+ +K+K +D + ++PP VN F+ V + Sbjct: 772 LKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAETDGKR 831 Query: 834 --RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L AIKG G I+ A + F + DFC+RVD + +NRR +E+L+ AGA Sbjct: 832 SRTIRYGLGAIKGSGQNAIEEILRAREEGRFIDIFDFCNRVDRRIVNRRTIEALIRAGAF 891 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QL+ S+ + A+ N + I ++ + + Sbjct: 892 DTLHPNRAQLIASVSLAMEAAEQAAANALQAGLFDMGDAPSQGHELIDEPEWPEKR---K 948 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D YK +R+ + + ++ G + +A ++VS + + T+ Sbjct: 949 LQEEKAALGFYLSGHLFDAYKDEVRRF----VRQKIGELKEGRDKLVAGVIVSLRTQMTQ 1004 Query: 1011 KG 1012 +G Sbjct: 1005 RG 1006 >gi|14194701|sp|Q9XDH5|DPO3A_THEAQ RecName: Full=DNA polymerase III subunit alpha gi|116667773|pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are Not Homologous: X-Ray Structure Of Dna Polymerase Iii gi|116667774|pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are Not Homologous: X-Ray Structure Of Dna Polymerase Iii gi|5531686|gb|AAD44403.1| DNA polymerase III [Thermus aquaticus] Length = 1220 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1091 (39%), Positives = 625/1091 (57%), Gaps = 84/1091 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL H+ +SLL+GA L ++L K + PA+A+TD NLF A+EF +KA A G++ Sbjct: 7 FAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + + +GK + LL GYQ L+ L SR YL + + Sbjct: 67 PIIGYEAYVAAESRFD-RKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYL-EGFYEK 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L+E +GLI L+G I + + +AE RL +FGDR ++ +Q Sbjct: 125 PRIDREILRE-HAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEIQN 183 Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + +QV+ + A + L +VATN+ ++ +ED AH+VL+A+ T + +R R Sbjct: 184 HGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPERWR 243 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEA------LENTVEIARRCSFILQVHAPI---LPRF-- 295 D Y+K EM ++ LPEA +NTVEIAR C L + + +PRF Sbjct: 244 FPCDEFYVKTPEEMRAM---LPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPL 300 Query: 296 ------------------IEKECDDIQK-----------------------EEENELRNK 314 + + D I + E + K Sbjct: 301 PEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEALARVEEK 360 Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374 A L RL + + A+ R +EL+VI RM F GYFLIV D+I WA+ + + V Sbjct: 361 AWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSV 420 Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434 GPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF RD VI+YV Sbjct: 421 GPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYV 480 Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIA 493 + +YG ++VAQI TFGSL +KAAL+DV R +P+ + + L KLIP P LQ AI Sbjct: 481 RERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAIQ 540 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 R D + +++E++ +LEGL RHAS HAAG+VI PL+ LVP+ RD + Sbjct: 541 VVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGR 599 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612 PVTQ++M +E GL+K DFLGL+TLT L ++ + + +GV++D +P DD +T+ LL Sbjct: 600 PVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDPKTFELL 659 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 + T G+FQLES GM + G++P +EDIIALVSLYRPGP+++I Y R +G+E + Sbjct: 660 SRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVS 719 Query: 673 -----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + P+L ET G+ +YQEQ+MQIA ++GYSL EAD+LRRAMGKK EEM K Sbjct: 720 YAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQK 779 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +ERF+ GA + G+ + A +F++L FA+YGFNKSHAAAY+++SYQTA++K HYPVEF Sbjct: 780 HRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEF 839 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 +AA +++E + +K+ ++ +DAR I ++PP VN DFKV I + L+A+K VG Sbjct: 840 MAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGE 899 Query: 848 TTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 AR I+E PF SL DF R+ + +N+R LESLV AGALD FG R +LL SL+ Sbjct: 900 MAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-DRARLLASLE 958 Query: 907 NIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + ++A + + +FA E+ + L++ ++ +R+E E LG Y SG Sbjct: 959 PLLRWAAETRERGRSGLVGLFAEVEEPPLVEASPLDEITM----LRYEKE--ALGIYVSG 1012 Query: 966 HPLDVYKPILRKMG---IKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 HP+ Y P LR++ I+ E V + G + L+ MV +K TR G + T S Sbjct: 1013 HPVLRY-PGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMARFTLS 1071 Query: 1022 EPAKEYEANFF 1032 + E F Sbjct: 1072 DETGALEVVVF 1082 >gi|86159864|ref|YP_466649.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85776375|gb|ABC83212.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 1210 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1080 (38%), Positives = 627/1080 (58%), Gaps = 84/1080 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +H+ YSLL+GA+ + ++L + A ++A+TD NLF A++F +KA AG++ Sbjct: 2 PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 PI+G + + D + G+ ++LL AEG+ L L S+ + + Sbjct: 62 PILGMEAYVAGDKGRTDRSERIGR-------HLILLAKNAEGWANLRYLSSKAFT-EGFY 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 RI L++ ++GL+ LT +G + R A + ++ +F ++ Sbjct: 114 YDPRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLE 172 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q + ++ +++ QL +PLV T ++ ++S ++ +AH+VLM +A + Sbjct: 173 VQSNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPK 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R D ++ EM + D EAL+NT+ IA C+ L + LP F E Sbjct: 233 RLRHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEG--- 289 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVAD 362 E++ + A GL+ R + K H +D YRQRL+ EL VI +M F GYFLIV D Sbjct: 290 -MSEDDYIVKLAREGLDRRFRE-IDGKYPHDRDLYRQRLEMELGVIKKMGFPGYFLIVQD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR++LLFERFLNP+R+SMPDFD+DF Sbjct: 348 FINWAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P D Sbjct: 408 CQNRRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVP-D 466 Query: 483 PAH----PVSLQAIADDSRFREARLAD----PSV------DR----------LLEISQKL 518 P P+ D E RL + P+V D+ LL+I+ L Sbjct: 467 PVQGKTPPLKELVFGSDKMPAEPRLKELYDKPTVISQWVDDKGVQNKVTTKDLLDIAMSL 526 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R A HAAG+VI D+PL + VP Y+D +S++ V+QF + +E AGL+KFDFLGLKT Sbjct: 527 EGLNRQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKT 586 Query: 579 LTLLQKSLDFLAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 LT++ +L + + ++ S IP DD Y L++ T G+FQ+ESSG + + M Sbjct: 587 LTVIDDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKM 646 Query: 636 QPDCIEDIIALVSLYRPGPIDN--------IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 +P ED+IA +LYRPGP+D + VY +RK+G+EK+ HP ++ +L+ T G Sbjct: 647 KPSRFEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHPSLEKVLEPTYG 706 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 VI+YQEQVMQI+Q+L+GYSL +AD+LRRAMGKK E M K++ F++GA NG+ +A Sbjct: 707 VIVYQEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDDKVAG 766 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 IF+L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E N +K+ Sbjct: 767 GIFDLMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHIS 826 Query: 808 DARQFNIQIMPPSVNTPCVDF----------KVGDNRIYYSLAAIKGVGTTTARHIMEAS 857 +AR ++++PP VN F K RI + L A++GVG + + I+EA Sbjct: 827 EARASQLEVLPPDVNESDAAFGAFPPGAESPKGSRGRIRFGLGAVRGVGDSAVQAIVEAR 886 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 A PF SL D RVDSKK+N++VLE+LV +GALD G R QL +D + Sbjct: 887 ASGPFKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAIAAGASAQA 946 Query: 918 NRTNKHENIFAH--------------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +R + ++F G ++ +E++ VR E+ LGFY Sbjct: 947 DRASGQASLFGALTPSAATEAKPRYPRPGDAVGEVNVEEWP---ERVRLAFEKEALGFYL 1003 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSE 1022 +GHPL Y+ +R+ G+ + + +V S +++ + KG+R G++T + Sbjct: 1004 TGHPLMGYEREVRRYASSTCAAVAHKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLED 1063 >gi|116667785|pdb|2HQA|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E. Coli Replicative Dna Polymerase Iii Length = 917 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/923 (43%), Positives = 561/923 (60%), Gaps = 36/923 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS ++G ++ K AA PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSXIDGLAKTAPLVKKAAALGXPALAITDFTNLCGLVKFYGAGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D ++Q +L + + +L + GYQ L L+S+ Y G Sbjct: 64 PIVGA--DFNVQCDLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R Sbjct: 114 PIIDRDWLIEL-NEGLILLSGGRXGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V+LA LP+VATN+ F+ D++AH++ +A+ + RPR Sbjct: 173 TGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y ++ E +F+D+PEAL NTVEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYXRSEEEXCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-----XS 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L +A GLE RLA + +Y +RL+ EL VI + F GYFLIV +F Sbjct: 288 TEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQXGFPGYFLIVXEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S PDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSXPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG+ AKA +RDVGR L PY VDR+ KLIP DP Sbjct: 408 XEKRDQVIEHVADXYGRDAVSQIITFGTXAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L++ ++KLEG+ R+A HA G+VI ++ Sbjct: 468 GXTLA-KAFEAEPQLPEIYEADEEVKALIDXARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEXINKRRAKNGEPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ L T +FQLES G + ++ +QPDC ED IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDXLQRSETTAVFQLESRGXKDLIKRLQPDCFEDXIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 V N +RK+G+E+I H + P+L+ T G+I+YQEQV QIAQ+LSGY+L AD Sbjct: 647 XVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVXQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 LRRA GKK EE KQ+ F GA KNGI+ +A IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 XLRRAXGKKKPEEXAKQRSVFAEGAEKNGINAELAXKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF AA T + DN EK+ + + ++I+PP +N+ F V Sbjct: 767 VSYQTLWLKAHYPAEFXAAVXTADXDNTEKVVGLVDECWRXGLKILPPDINSGLYHFHVN 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+ I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ +G Sbjct: 827 DDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIXSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYA 912 A D G R L SL + K A Sbjct: 887 AFDRLGPHRAALXNSLGDALKAA 909 >gi|257092573|ref|YP_003166214.1| DNA polymerase III subunit alpha [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045097|gb|ACV34285.1| DNA polymerase III, alpha subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1156 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1045 (39%), Positives = 617/1045 (59%), Gaps = 51/1045 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL++HS YS+ +G + L++ + + A PA+A++D N+F ++F A + GI+PI Sbjct: 6 FIHLRLHSEYSITDGIVRLDDAVARAAGYGMPALALSDLANVFGLVKFYSSARSKGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + I N G P ++LL + GY +L EL+SR YL + + Sbjct: 66 LGSDVCI--------ANDGDPDRPY--RLLLLCRSRPGYLQLCELLSRAYLAPRVRGRAE 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L+E+G +GLI L+G ++G + A + ++A R ++K F Y+ +QR Sbjct: 116 ITRRMLEEVGVDGLIALSGAAAGDVGEALLQGNQELAANRAARWEKTFPGAFYLEVQR-- 173 Query: 191 GYDRYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 Y + ++ +V LA LPLVAT+ FL +D++AH+ + +A ++ RP Sbjct: 174 -YGQAQQEALVAATADLAGELGLPLVATHPIQFLERDDFKAHEARVCIAEGYMLGDARRP 232 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R+ T + Y K+ EM+++F DLPEAL N+VEIA+RC+ + + LP F + Sbjct: 233 RLHTEEQYFKSADEMLALFGDLPEALANSVEIAKRCNLQITLGKSYLPDFPTPAGVTL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ LR +AVAGLE+RL Q + Y RL E + I +M F GYFLIVAD Sbjct: 291 --DDFLRQQAVAGLEIRLQQLFPDPDVRTAERAPYDARLQLETDTIVQMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N+ PVGPGRGSGAGSV AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKHNSCPVGPGRGSGAGSVVAYALGITDLDPLRYALLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQD R VI YV+ KYG V+QI+TFG++ +KA +RDVGR L +PY+ D+L KLIP + Sbjct: 409 CQDNRWRVIEYVRQKYGAAAVSQIVTFGTMSSKAVIRDVGRVLDLPYNFCDQLSKLIPVE 468 Query: 483 PAHPVSL-QAIADDSRFREARLAD-PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P+SL +AIA + + +AR+ D V L ++ +LE L R+ HA G++I L+ Sbjct: 469 TNKPLSLAKAIAAEPQL-QARIDDEEEVRDLFALAARLEDLTRNVGMHAGGVLIAPGKLT 527 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 P+Y + V+QF+ +EK GL+KFDFLGL+ LT+++ +L ++ Q GV+ DL+ Sbjct: 528 DFCPVYSADGGSV-VSQFDKDDVEKVGLVKFDFLGLRNLTIIELALKYVEQLSGVRPDLA 586 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 + FDD + Y +L T IFQ+ES GM++ + + PD EDIIA+++LYRPGP+ + + Sbjct: 587 TMAFDDPQAYQILKDGNTTAIFQVESEGMKKLVRKLAPDRFEDIIAVLALYRPGPLGSGM 646 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V + RK G++KI + L+ T GVI+YQEQVMQIAQ++ GY+L AD+LRRAM Sbjct: 647 VDDFILRKKGQQKIEYYIDDLKACLEPTYGVIVYQEQVMQIAQIIGGYTLGAADLLRRAM 706 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EEM ++ GA K G + +A+ +F+L+ KFA+YGFNKSH AAYAV++Y TA Sbjct: 707 GKKKAEEMALHRDLMREGARKKGYDEKLAMQLFDLMEKFAEYGFNKSHTAAYAVVTYHTA 766 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIY 836 W+K H+ F+AA+++ +MD + +K F DA ++I+ P VN F V + + Sbjct: 767 WLKAHHCAAFMAATLSSDMDVTDTVKIFHDDAINNGLRILGPDVNASEYRFMPVDRSTVR 826 Query: 837 YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L A+KG G I++ SA F L DFC RVD + +NRR +E+L+ AGA D Sbjct: 827 YGLGAVKGTGEQAVNAILKTRSAAGAFRDLFDFCRRVDKRLVNRRTIEALIRAGAFDSLD 886 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDK------ITLEKFSVENS 948 R +LL S+ + A+ E+N +IF E G D+ + + ++S Sbjct: 887 SHRARLLASVGIAMEAAEQAERNAMQVSLFDIF--EAGGEEDREHGPQYVEVARWSERQ- 943 Query: 949 SVRFENEQRVLGFYFSGHPL-DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 + E+ LGFYFSGHP V + R + + + R LA +VV + K Sbjct: 944 --KLNEEKLALGFYFSGHPFHSVQAEVSRFVRTR---LAALEARKEVQWLAGLVVGVRSK 998 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 T +G + +V + + E + F Sbjct: 999 LTARGKMV-FVQLDDGSTSLEVSVF 1022 >gi|87118611|ref|ZP_01074510.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121] gi|86166245|gb|EAQ67511.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121] Length = 1136 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1034 (40%), Positives = 618/1034 (59%), Gaps = 55/1034 (5%) Query: 29 LNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQ 88 + +L A PA+A+TD NNL + F + A +GI+PI G + I+ L+ ++ Sbjct: 1 MKGLLGATAGLNMPAVAMTDENNLCGFVRFYKGAMGSGIKPICGADVVIEADGELEENHR 60 Query: 89 GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148 + LL T +GY+ +IE++S+ Y L Q + + +W+ E E +I+++ Sbjct: 61 ----------LTLLAMTNKGYKNIIEVISKGYQLGQFEGRPIVQRAWV-EAHQEDVILIS 109 Query: 149 GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR--GYDRYRESQVVQLAYT 206 G G + + +A+++L + ++F +R YV LQR G + Y + VV LA Sbjct: 110 GAQYGDVGQYLALQKPTLAKQKLERWMQIFPNRFYVELQRTSRIGEEDYIHA-VVPLATE 168 Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFS 265 P+VATN+ FL ED+E+H+ + + T+ + + R + + YLK+ EM ++F Sbjct: 169 LACPVVATNDVRFLKREDFESHEARVCIHDGVTLDDPRRKKRYSEEQYLKSADEMQALFD 228 Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325 D+PEALENTVEIA+RC+ + + LP F E + + + GLE R Sbjct: 229 DIPEALENTVEIAKRCNVDVLLGKYFLPDFPVPEGMTM----DVFFSELSFKGLEERF-- 282 Query: 326 GAIAKGY------HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 + K Y Q+Y RLDFELN+I +M F GYFLIV DFIQWAK N+IPVGPGRG Sbjct: 283 DFLVKKYGDRIADKKQEYWDRLDFELNIINQMGFPGYFLIVMDFIQWAKDNDIPVGPGRG 342 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 SGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC D RD+VI YV YG Sbjct: 343 SGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDKVIDYVAQTYG 402 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499 + V+QIITFG++ AKA +RDV R PYS D+L KLIP + ++ +A+ ++ + Sbjct: 403 RDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFEIGMTLN-KALEEEPMLK 461 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 E D ++E++ LEG+ R+ HA G+VI L+ P+Y + VTQ++ Sbjct: 462 EFIENDEEAGDVMEMALSLEGVVRNFGKHAGGVVIAPTKLTDFSPLYCEEDGSGLVTQYD 521 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSL----DFLAQRG-VKVDLSLIPFDDHETYHLLTT 614 +E+AGL+KFDFLGLKTLT++ ++ D A+ G +D++LI +D TY +L Sbjct: 522 KNDVEEAGLVKFDFLGLKTLTVVDWAMKNINDIQAREGKPALDITLIDLEDKPTYDMLQR 581 Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIV 672 T +FQLES GM++ ++ + P EDI+ALV+LYRPGP+ + +V + NRK+G+ ++ Sbjct: 582 AETTAVFQLESRGMKELIKKLLPSRFEDIVALVALYRPGPLGSGMVDDFINRKHGRSELA 641 Query: 673 SIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 HP LI P+L+ T G+I+YQEQVMQIAQ+L+ +SL AD+LRRAMGKK E M Sbjct: 642 FPHPDYQHDDLI-PVLEPTYGIILYQEQVMQIAQVLARFSLGGADLLRRAMGKKKPEVMA 700 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +Q+ F+ GA K IS+ ++ NIF+L+ KFA YGFNKSH+AAYA++SYQTAW+K HYP Sbjct: 701 EQRLLFMEGAGKYDISEELSGNIFDLMEKFAGYGFNKSHSAAYALVSYQTAWLKHHYPAP 760 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---IYYSLAAIK 843 F+AA ++ +M N +KI F ++ R +Q+ P+VN F V NR I Y L AIK Sbjct: 761 FMAAVLSADMQNTDKIVIFIEECRAMKLQLELPNVNESVYKFTV--NRAGAIVYGLGAIK 818 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG I +A + PF+ + DFC R+ KK+N+RV+E+L+ +GALD G +R L Sbjct: 819 GVGEGPIEAITQAREEGPFEHIFDFCKRI-GKKVNKRVMEALIRSGALDQIGPNRATLFA 877 Query: 904 SLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFS--DKITLEKFSVENSSVRFENEQRVL 959 S+D K A + K+ ++F A E+ T D+I ++ S R + E+ L Sbjct: 878 SIDEALKRADRIAKDEDAGMMDLFGVAVEESTEGAYDEIGIQ--HEWPSRQRLDGEKDTL 935 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G Y +GHP+D Y+ +R+ + + RG++ +A ++V + K++KG I +VT Sbjct: 936 GLYVTGHPIDDYEKEIRRFA-RSRIVDLQPKRGDSQIMAGLIVEMRITKSKKGGNIAFVT 994 Query: 1020 FSEPAKEYEANFFP 1033 + + E FP Sbjct: 995 LDDRSARIEVTVFP 1008 >gi|222529253|ref|YP_002573135.1| DNA polymerase III DnaE [Caldicellulosiruptor bescii DSM 6725] gi|222456100|gb|ACM60362.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM 6725] Length = 1139 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1040 (38%), Positives = 613/1040 (58%), Gaps = 44/1040 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+ ITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKDLNMNAVGITDHGAMYGVIDFYKTAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122 IIGC++ + +T F P+I VLL +GY+ L ++VS + + Sbjct: 62 IIGCEVYL----------APRTRFDKEPNIDNDIHHLVLLAMDNDGYRNLSKIVS-IGFV 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + R+ L + ++GLI LT +G I + + + +K++FG+ Sbjct: 111 EGFYYKPRVDREVLSKY-SKGLIALTSCLAGEIPKLILREQKEKLYDAINFYKEVFGENF 169 Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y LQ H R+ +++++L+ +++PLVATN+ +L ED HD+L+ + +S Sbjct: 170 YFELQYHYIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTIS 229 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +R T + YLK+ EM +F +PEAL+NT+EIA +C+ + LP+F + Sbjct: 230 DSNRMEFPTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKF---QL 286 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + + L+ A+ G + R A A D RL EL VI M F YFLIV Sbjct: 287 PEGKSDAFEYLKELALEGFKKRYKNDDKA----AYD---RLMMELQVIKDMGFVEYFLIV 339 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DI Sbjct: 340 QDFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDI 399 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC RR EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP Sbjct: 400 DFCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMIP 459 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P + +A+ + ++ + +V R+++ ++ LEG+ RHAS HAAG+VI P++ Sbjct: 460 FSPGMTID-KALEINHDLKKIYEQNDTVRRIIDTARNLEGMPRHASVHAAGVVISSCPIT 518 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ R D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL Sbjct: 519 DLVPLAR--TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLD 576 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I ++D Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I Sbjct: 577 RIDYNDKNVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIP 636 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 VY KN +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM K Sbjct: 637 VYIQNKNNREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAK 696 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + + ++K+RFI GA NGI K A IF ++ FA Y FNKSHAAAYA+++YQTA++ Sbjct: 697 KKADILMEEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYL 756 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +Y +EF+A+ +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L Sbjct: 757 KKYYTIEFMASLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGL 816 Query: 840 AAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIK +G HI++ K F L DF RVD+ +N+R++E+L+ +GA D G +R Sbjct: 817 RAIKSLGENVIAHILKEREKKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGLNR 876 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 LL S+++I Q +K N ++ F G ++ + + + E+ Sbjct: 877 NSLLASVEDILAIKQTKKK---NANQFSFFEISGNENESFVYKNMPQPTAQELMKMEKDT 933 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-----QQKKTRKGS 1013 +G Y S HPL+ Y + K I E A + + ++V + K T+ Sbjct: 934 IGVYISSHPLEKYTEEISKYNITPLSEISAMSEEDEYKFEQILVCGILKEVKVKLTKNNL 993 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + + + E FFP Sbjct: 994 TMAFAKLEDLTDSVEVLFFP 1013 >gi|312793441|ref|YP_004026364.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180581|gb|ADQ40751.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1140 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1041 (38%), Positives = 617/1041 (59%), Gaps = 46/1041 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+AITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGVMYGVIDFYKAAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122 IIGC++ + +T F P+I VLL EGY+ L ++VS + + Sbjct: 62 IIGCEVYL----------APRTRFDKEPNIDNDIHHLVLLAMDNEGYKNLSKIVS-IGFV 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + R+ L + ++GL+ LT +G I + + + +K++FG+ Sbjct: 111 EGFYYKPRVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENF 169 Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y LQ H R+ +++++L+ +++PLVATN+ +L ED HD+L+ + +S Sbjct: 170 YFELQYHYIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTIS 229 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +R T + YLK+ EM IF +PEAL+NT+EIA +C+ + LP+F + Sbjct: 230 DSNRMEFPTDEFYLKSPEEMQQIFGYIPEALKNTLEIAEKCNVEFEFGKINLPKF---QL 286 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + + L+ A+ G + R ++ A A D RL EL VI M F YFLIV Sbjct: 287 PEGKSDAFEYLKELALEGFKKRYSKDDKA----AYD---RLMMELQVIKDMGFVEYFLIV 339 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DI Sbjct: 340 RDFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDI 399 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC RR EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP Sbjct: 400 DFCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIP 459 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P + +A+ + ++ + +V ++++ ++ LEG+ RHAS HAAG+VI P++ Sbjct: 460 FSPGMTID-KALEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISSCPIT 518 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ R D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL Sbjct: 519 DLVPLAR--TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLD 576 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I ++D Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I Sbjct: 577 RIDYNDKNVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIP 636 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 VY KN +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM K Sbjct: 637 VYIQNKNNREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAK 696 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + + ++K+RFI GA NG+ K A IF ++ FA Y FNKSHAAAYA+++YQTA++ Sbjct: 697 KKADILMEEKDRFIEGAMANGVEKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYL 756 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +Y +EF+ + +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L Sbjct: 757 KKYYTIEFMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGL 816 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIK +G HI+ E F L DF RVD+ +N+R++E+L+ +GA D G +R Sbjct: 817 RAIKSLGENVIAHILKEREVKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINR 876 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 LL S+++I Q +K N ++ F G ++ + + + E+ Sbjct: 877 NSLLASVEDILVLKQAKKK---NANQFSFFEISGNENESFEYKNMPQPTAQELMKMEKDT 933 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVSKQQKKTRKG 1012 +G Y S HPL+ Y + K + E ++T+ + I + ++ + K T+ Sbjct: 934 IGIYISSHPLERYTEEISKYNVTPLSE-ISTMSEEDEYKFEQILVCGILKEVKVKLTKNN 992 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + + + E FFP Sbjct: 993 QTMAFAKLEDLTDSVEVLFFP 1013 >gi|312127676|ref|YP_003992550.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis 108] gi|311777695|gb|ADQ07181.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor hydrothermalis 108] Length = 1140 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/1042 (38%), Positives = 611/1042 (58%), Gaps = 48/1042 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+AITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122 IIGC++ + +T F P+I VLL +GY+ L ++VS + + Sbjct: 62 IIGCEVYL----------APRTRFDKEPNIDNDIHHLVLLAMDNDGYRNLSKIVS-IGFV 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + R+ L + ++GL+ LT +G I + + + +K++FG+ Sbjct: 111 EGFYYKPRVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENF 169 Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y LQ H R+ +++++L+ +++PLVATN+ +L ED HD+L+ + +S Sbjct: 170 YFELQYHYIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTIS 229 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +R T + YLK+ EM +F +PEAL+NT+EIA +C+ + LP+F Sbjct: 230 DSNRMEFPTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKF----- 284 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFL 358 + E +N A L+ LA K Y D RL EL VI M F YFL Sbjct: 285 ------QLPEGKNDAFEYLK-ELALEGFKKRYKNDDKAAYDRLMMELQVIKDMGFVEYFL 337 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD Sbjct: 338 IVQDFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDI 397 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC RR EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+ Sbjct: 398 DIDFCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKM 457 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 +P P + +A+ + ++ + +V R+++ ++ LEG+ RHAS HAAG+VI P Sbjct: 458 VPFSPGMTID-KALEINHDLKKIYEQNDTVRRIIDTARNLEGMPRHASVHAAGVVISSCP 516 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 ++ LVP+ R D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++D Sbjct: 517 ITDLVPLAR--TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEID 574 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L I ++D Y ++ T G+FQLESSGM+Q + ++P+ +EDIIA +SL+RPGP+D Sbjct: 575 LDRIDYNDKNVYEFISEGNTNGVFQLESSGMKQFMRELKPENLEDIIAGISLFRPGPMDQ 634 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I VY KN +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM Sbjct: 635 IPVYIQNKNNREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAM 694 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + + ++K+RFI GA NGI K A IF ++ FA Y FNKSHAAAYA+++YQTA Sbjct: 695 AKKKADILMEEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTA 754 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +Y +EF+ + +T M++ EK+ + ++ R+F I I+PP +N DF + N I + Sbjct: 755 YLKKYYTIEFMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRF 814 Query: 838 SLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIK +G HI++ +K F L DF RVD+ +N+R++E+L+ +GA D G Sbjct: 815 GLRAIKSLGENVIAHILKEREEKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGI 874 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LL S+++I Q +K N ++ F G ++ + + + E+ Sbjct: 875 NRNSLLASVEDILVIKQAKKK---NANQFSFFEISGNENESFEYKNMPQPTAQELMKMEK 931 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-----QQKKTRK 1011 +G Y S HPL+ Y + K + E A + + ++V + K T+ Sbjct: 932 DTIGIYISSHPLERYTEEISKYNVTPLSEISAMSEEDEYKFEQILVCGILKEVKVKLTKN 991 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 + + + E FFP Sbjct: 992 NQTMAFAKLEDLTDSVEVLFFP 1013 >gi|146296832|ref|YP_001180603.1| DNA polymerase III DnaE [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410408|gb|ABP67412.1| DNA polymerase III catalytic subunit, DnaE type [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1141 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1042 (38%), Positives = 620/1042 (59%), Gaps = 48/1042 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA+ + ++ +++ +IAITD ++ ++F + A GI+P Sbjct: 2 SFVHLHVHTEYSLLDGAVRIESLFERVRQLNMHSIAITDHGAMYGVVDFYKAAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122 IIGC++ + ++ F P+I VLL EGY+ L ++VS + + Sbjct: 62 IIGCEVYL----------APRSRFDKEPNIDNDIHHLVLLAIDNEGYKNLSKIVS-IGFV 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + R+ L + ++GLI LT +G I + + + + +K +FG Sbjct: 111 EGFYYKPRVDREILSKY-SKGLIALTSCLAGEIPKFILRDQKEKLMDAIGFYKDVFGCNF 169 Query: 183 YVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y LQ H G D R+ S++++L+ +++P+VATN+ +L ED E HD+L+ + + Sbjct: 170 YFELQYH-GIDEQRFVNSELIRLSKKYQIPVVATNDVHYLKREDREIHDILLCIQTGKTI 228 Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 +R T + YLK+ EM +F +PE+L+NT+EIA +C+ + LP+F + Sbjct: 229 HDSNRMEFPTSEFYLKSAQEMEEVFGYIPESLKNTLEIAEKCNVEFEFGKINLPKF---Q 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + + L+ A AG E R ++ A A D RL ELNVI M F+ YFLI Sbjct: 286 LPEGKSDAFEYLKELAFAGFEKRYSKENKA----AYD---RLLMELNVIKDMGFTEYFLI 338 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD D Sbjct: 339 VHDFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYNLLFERFLNPERVSMPDID 398 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC RR EVI YV NKYG ++V+QIITFG++ A+A++RDVGR L +PY+QVD + K++ Sbjct: 399 IDFCYQRRQEVIDYVTNKYGKDKVSQIITFGTMAARASIRDVGRVLGVPYAQVDEIAKMV 458 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P P + +A+ + ++ + +V R+++ ++ +EG+ RH S HAAG+VI P+ Sbjct: 459 PFSPGMTID-KALEVNHDLKKIYEQNETVKRIIDTARSIEGMPRHTSVHAAGVVISSCPI 517 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + LVP+ R D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + R +++DL Sbjct: 518 TDLVPLAR--TEDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELIKKHRKIEIDL 575 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I ++D Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I Sbjct: 576 DKIDYNDRSVYQFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQI 635 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 VY KN KEKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM Sbjct: 636 PVYIQNKNNKEKIEYLHPKLEPILNVTYGCIVYQEQVMQIFRELAGYSLGRADLVRRAMA 695 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK + + ++++RFI GA NG+ + A IFE++ FA Y FNKSHAAAYA+++YQTA+ Sbjct: 696 KKKADILMEERDRFIEGAVANGVDRQTAEKIFEIIEDFASYAFNKSHAAAYAILAYQTAY 755 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K ++ +EF+ + +T M++ EK+ + ++ R+F I I+PP +N DF + N I + Sbjct: 756 LKKYFTIEFMTSLITSVMNSNEKVGMYIEECRRFGISILPPDINKSSYDFTIEGNSIRFG 815 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIK +G HI+ E + F L DF RVD+ +N+R++E+L+ +GA D + Sbjct: 816 LRAIKSLGENVISHILKEREQNGEFKDLYDFVMRVDTNTVNKRIIENLIKSGAFDFTKIN 875 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTN-KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R LL S+++I Q +KN I + FS K E + E + E+ Sbjct: 876 RNSLLASVEDILTIKQSQKKNANQITFFEISDDQTKIFSYKDLPEPTTEE----LLQMEK 931 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-----QQKKTRK 1011 +G Y SGHPL+ Y ++ K + E + + ++V + K T+ Sbjct: 932 DTIGIYISGHPLEKYGDLISKYNVVSLAELSNMTEDDEYKYQQILVCGILKEVKIKLTKN 991 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 + + + E FFP Sbjct: 992 NQTMAFAKIEDLTDTLEVLFFP 1013 >gi|299136806|ref|ZP_07029989.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8] gi|298601321|gb|EFI57476.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8] Length = 1177 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1057 (39%), Positives = 613/1057 (57%), Gaps = 73/1057 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + F HL +H+ YSLL+GA ++ + + Q + A+TD N++ A+ F + Sbjct: 2 AAEFTHLHLHTDYSLLDGACDVDKLAKHLVKIGQTSAAMTDHGNIYGAVHFFDAMKKKNL 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+GC+L + +D+ + + P +++L GY+ L+ L S L K+ Sbjct: 62 KPILGCELYVCKEDDHR--REFANPDSKYNHMLVLAENEAGYRNLVRLTSEAALHGFYKK 119 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ ++L + EGLI +G +G + + + A+K ++ +FG ++ + Sbjct: 120 P-RVSKNFLAK-HVEGLIGFSGCLAGEVSQHLMEGDYEKAKKAAGDYETMFGRGNFFLEI 177 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H D+ + +L ++PL+ATN+S ++ ++D AH+VL+ V T S D Sbjct: 178 QDHGLEPDKAVTEAMFRLEKDLDIPLIATNDSHYIEDQDSRAHEVLLCV--QTAGSMNDP 235 Query: 246 PRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R T + Y+K+ EM +FS PE T++ RC L+ P+F E +D Sbjct: 236 KRFKFDTQEFYIKSADEMHRLFSHAPEVCTRTMQFPERCQLELKAVKNPFPKFDVPEGED 295 Query: 303 IQKEEEN-------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + E R AV LE R G + K DY RL+ E++ I +MKF G Sbjct: 296 LDSYFEQVCRAGWRHRRETAVKHLEDR---GILRKSI--ADYEARLNREIDCIKQMKFPG 350 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YF+IV DFI++AK+ +IPVGPGRGS AGS+ AY + ITD+DPL+ LLFERFLNP+R+SM Sbjct: 351 YFMIVWDFIRYAKQQSIPVGPGRGSAAGSLVAYVMEITDVDPLQNDLLFERFLNPERVSM 410 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD DIDFC +RR EVI+YV+ KYG ++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ Sbjct: 411 PDVDIDFCMNRRGEVIKYVREKYGEDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRI 470 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP + QA+ D +A DP + L++ + +LEGL R A HAAG+VI Sbjct: 471 AKLIPATIGITIE-QALKDSPPLAQA-YEDPKIRELIDTALRLEGLVRGAGVHAAGVVIA 528 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594 +PL++LVP+ R + D VT ++MK +EK GL+K DFLGL TLT++ L + + RGV Sbjct: 529 PQPLTELVPVTR-TKDDAIVTSYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKLIKSNRGV 587 Query: 595 KVDLSLIPFDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 VD++ IP DD ETY + + T G+FQ ES GMR L +P +ED+ AL +LYRPG Sbjct: 588 DVDMATIPLDDAETYEKVYHRALTSGVFQFESGGMRDVLRRYKPTTVEDLTALNALYRPG 647 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PI ++ + RK G+ + + P ++P+LKET GVI+YQEQVMQI+ ++GYSL AD Sbjct: 648 PIQGGMIDDFIERKWGRRAVEYLFPELEPILKETLGVIVYQEQVMQISSAIAGYSLGGAD 707 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F++GA++ K A +F+L+ +FA YGFNKSH+AAYA+ Sbjct: 708 LLRRAMGKKNAEEMAKQRVLFMAGAAERKFHKDRAGQLFDLMEQFAGYGFNKSHSAAYAL 767 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++Y TAW+KTHYPVEF+AA +T E E + K+ + R+ NI ++PP V +F Sbjct: 768 LAYHTAWLKTHYPVEFMAALLTSETSKPENVVKYIGECREINIPVVPPDVQISAANFTPA 827 Query: 832 DNRIYYSLAAIKGVGTTT------ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 + I + LAAIK VG AR ++A+ + F SL +FC +VD + +N+RVLESL Sbjct: 828 GDSIRFGLAAIKNVGHNAIDSIIKAREELQAAGKQGFVSLWEFCDKVDLRLMNKRVLESL 887 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--------- 936 AGALD FG R ++ +LD + AQ +++ +F G F D Sbjct: 888 CKAGALDAFG-PRARVFAALDKAMERAQKSQRDAAAGQSGLF----GMFDDPGPSSASTG 942 Query: 937 -KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI--------------- 980 + TL + R +NE+ VLGF+ SGHP+D Y+ LR M + Sbjct: 943 GEETLPPAPDWDEHTRLQNEKDVLGFFVSGHPMDKYREKLRNMKVVDTATACEMKPEPQV 1002 Query: 981 --KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 +G E +GN I++A ++ + K+++ + Sbjct: 1003 FRRGQAE-----QGNEIQIAGVITGLKVAKSKRSGEM 1034 >gi|330837734|ref|YP_004412375.1| DNA polymerase III, alpha subunit [Spirochaeta coccoides DSM 17374] gi|329749637|gb|AEC02993.1| DNA polymerase III, alpha subunit [Spirochaeta coccoides DSM 17374] Length = 1170 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1030 (38%), Positives = 612/1030 (59%), Gaps = 27/1030 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL H+ YSLL+GA S+ + K A+AITD N+F A +F + AA I+P Sbjct: 3 GFVHLHNHTDYSLLDGAGSIPKYIAKAKELGMNALAITDHGNMFGAHKFYKACKAADIKP 62 Query: 70 IIGCQLDIDMQDN-LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIGC+ + + + L+ +GK P ++LL +GY L+EL S Y+ +G Sbjct: 63 IIGCEFYVAPESHTLREGVEGK---PRAYHLILLAMNEKGYHNLMELNSISYV--EGFYY 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187 L E EG++ L+ G I N + A+K L +F G R Y+ +Q Sbjct: 118 KPRIDHELIEQHNEGVLCLSACLGGEIASLLKDNRYEDAKKAALWHASVFDGGRYYLEIQ 177 Query: 188 RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ +Q + +L+ +PLVATN+ ++++ D AHD+L+ + ++ DR Sbjct: 178 DHGLPEQKTVNQALARLSTETGIPLVATNDIHYINKSDANAHDILLCIGMGKKKNEADRM 237 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQ 304 R + ++Y+K+ EM F P+A+ENTV+IA C+ + P LPRF + K D Sbjct: 238 RFHSAEYYMKSAEEMEKQFLWCPQAVENTVKIADLCNLEIHFPGPRLPRFRVPKGFTD-- 295 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++ LR+ + GL R A+ D +RLD+EL+VI +M F GYFLIV D+I Sbjct: 296 ---DSYLRHLSHEGLARRYAEVT-------PDLEKRLDYELDVIIQMGFQGYFLIVRDYI 345 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK+ +IPVGPGRGSGAGS+ AY ITD+DP++++LLFERFLNP+R +MPDFDIDFC Sbjct: 346 YWAKQRDIPVGPGRGSGAGSLVAYCTEITDVDPIKYNLLFERFLNPERKTMPDFDIDFCF 405 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + R EVI YV YG + VAQI TFG+L+AKA ++DV R L +P+ + +R+ K+IP+DP Sbjct: 406 EHRQEVIEYVTEHYGEDHVAQIATFGTLKAKAVVKDVARVLDIPFEESNRIAKMIPDDPK 465 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ ++ A L + + +LEGL RH STHAAG+VIG++ L VP Sbjct: 466 MTLK-KALEQSPELKQVADAGGIYGELFDAAFRLEGLNRHTSTHAAGVVIGEKKLLTYVP 524 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 +YRD ++ TQF M +E+ GL+K D LGLKTLTL++ ++D + + + I + Sbjct: 525 LYRDAKTGAISTQFTMDQLEENGLVKMDLLGLKTLTLIKHTVDLVHKTNPGFSIEDINEE 584 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ +L + +FQ ES+GM++ L P+ IED++AL +LYRPGP+D I + Sbjct: 585 DEKTFDMLRRGDSACVFQFESTGMQKILRDALPNSIEDLVALNALYRPGPMDYIPQFVES 644 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KNG+ I HP ++ LK T GVI+YQEQVM++AQ++ GY+L AD+LRR M KK EE Sbjct: 645 KNGRMPITYAHPDLEETLKTTYGVIVYQEQVMKVAQIIGGYTLGAADILRRIMSKKKAEE 704 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + Q+ +F+ GA G + +A IF++L FA YGFNKSHA AY+VI+YQTA++K +YP Sbjct: 705 LAAQEVKFVEGALAKGYQEKLARYIFKMLEPFAGYGFNKSHAVAYSVIAYQTAFLKANYP 764 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA++T E++N +K ++ ++A+ I+++PPS+N F + +I Y LA IK Sbjct: 765 AEFMAANLTNEINNPDKFSEYLREAKHMGIEVLPPSINYSERQFNAVEGKIVYGLAGIKN 824 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG A I+ E + P++S DF RVDS+ +N ++LESL+ AG D +R L++ Sbjct: 825 VGEGVADLIIRERNEHGPYESFIDFLVRVDSRAMNSKLLESLIKAGTFDSMEENRPTLIE 884 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +++ YAQ ++++ + ++F +G D T+ + + E E+ +LGFY Sbjct: 885 NMEAAVIYAQKQKESKESGQSSLF---EGDDIDSFTMTRHPDWEMREKLEIEKALLGFYI 941 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 SGHPLD+Y+ ++ + + R I L AM+ + T+K + +G++ + Sbjct: 942 SGHPLDLYRDAWKRSVLVDFSRPERFPRNRQISLVAMITDIRTLMTKKQTMMGFLELVDF 1001 Query: 1024 AKEYEANFFP 1033 + EA FP Sbjct: 1002 SGTLEATCFP 1011 >gi|203284485|ref|YP_002222225.1| DNA polymerase III, subunit alpha [Borrelia duttonii Ly] gi|201083928|gb|ACH93519.1| DNA polymerase III, subunit alpha [Borrelia duttonii Ly] Length = 1144 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/973 (41%), Positives = 591/973 (60%), Gaps = 35/973 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS +SLL+GA + +I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 7 FVHLHVHSDFSLLDGAAKIVDIVSKAKEYNMSHIALTDHGNLFGAIKFYREAKKAGIKPI 66 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ M + LK + ++LL +GY+ L++L S YL + R Sbjct: 67 VG--IEAYMSNTLKHIKKNDEFGKPYYHLILLAKNEQGYKNLLKLTSVSYL-EGFYYRPR 123 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + +EGLI ++ G I + N A+ +L FK FGD Y+ LQRH Sbjct: 124 MDRDDLAKY-SEGLICMSACIGGIIPQLILSNRFDDAKNEILWFKNTFGDDFYLELQRHG 182 Query: 191 GYDRYRESQVVQ---LAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 ++ +V +AY+ EL L +N+S ++++ED A D+++ + S R Sbjct: 183 ----IKQQDIVNEKLIAYSKELDVQLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDSGR 238 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECDDI 303 ++ D YLK+ EM +F DLPEAL NT++IA +C+ F ++ PI P + E D Sbjct: 239 FKMETDEFYLKSPEEMCELFKDLPEALANTLKIAEKCNDFEIKFPGPIFPEYHIPEEFDT 298 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 Q + L + + GL+ R A + ++R +EL+ I M F YFLIV DF Sbjct: 299 QGQY---LEHLTLEGLKFRYAN-------ITDNIKERAFYELSTIINMGFEAYFLIVWDF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A N+IPVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFC Sbjct: 349 IKFAHDNDIPVGPGRGSGAGSIVAYALRITDVDPLKYNLLFERFLNPERVSMPDFDIDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RDEVI+YV KYG ++VAQIITFG+L+ KA +DVGR L +P+ Q + + KLIP+ P Sbjct: 409 FEGRDEVIKYVTKKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFVQSNEITKLIPDGP 468 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 VSL+ + D +E P + L+E + LEG+ RHASTHAAGIVI L+ V Sbjct: 469 K--VSLREVLKDKALKEYLNKGPVYNELMEAALVLEGMNRHASTHAAGIVIARTSLTDYV 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+Y+D + D TQ+ M +E GL+K DFLGLKTLTL++ + + ++ I Sbjct: 527 PLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAEKLIKITDPDFSIATISD 586 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 D +T+ +L+ + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 587 SDAKTFKMLSEGRSTSVFQFESEGMQQILKDSKPDNIEDLIALNALYRPGPMQFIPQFVA 646 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 K G ++I HP + +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK ++ Sbjct: 647 AKTGAKRIKYPHPDLTEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKED 706 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM++ K FI GA + G +T+A +IFELL FA YGFNKSHAAAY++I+YQTA++K +Y Sbjct: 707 EMNRMKVDFIKGALEKGYDETLASDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKANY 766 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P F+AA++T E++N EK+ + ++ + I ++ P +N DF+V + I Y L IK Sbjct: 767 PASFMAANLTNEINNTEKLSYYIEETKSMGINVLRPDINQSFKDFRVVGSDISYGLNGIK 826 Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 +G I+ E + + S EDF RVD K +N++ LE+ + +G D G +R L+ Sbjct: 827 NIGELMVDLILNERQENGEYKSFEDFIKRVDEKVINKKFLEASIKSGLFDSLGQNRRTLI 886 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVRFENEQRVL 959 ++LD + + + + ++FA + + TF+ + E +E + FE E +L Sbjct: 887 ENLDKLIAFVLENKNAKKQGQNSLFASQNILEETFNYNLFEEYSYLE--LLGFEKE--LL 942 Query: 960 GFYFSGHPLDVYK 972 GFY SGHPLD YK Sbjct: 943 GFYVSGHPLDPYK 955 >gi|134093726|ref|YP_001098801.1| DNA polymerase III subunit alpha [Herminiimonas arsenicoxydans] gi|133737629|emb|CAL60672.1| DNA polymerase III, alpha subunit [Herminiimonas arsenicoxydans] Length = 1153 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/992 (40%), Positives = 593/992 (59%), Gaps = 41/992 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP F+HL++HS YS+++G + +++++ AAD QP++AITD NLF ++F ++A + GI Sbjct: 3 SPQFIHLRLHSEYSIVDGLVRIDDVIAAAAADAQPSLAITDLANLFGMVKFYKEARSKGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+GC ++ ++N P+ ++LLV GY +L EL+S+ +L + + Sbjct: 63 KPIVGC--------DVWISNDNDRDKPS--RLLLLVKNKTGYLQLCELLSKAWLTNLHRG 112 Query: 128 SVRICLSWLQEIGTEG----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 I WL+++ EG LI+L+G G I A + AE+ + +F Y Sbjct: 113 RAEIRPEWLEQLAAEGKPNGLIVLSGAHFGDIGMAIDNGNLAAAERHAKRWADMFPGHFY 172 Query: 184 VNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 + +QR + R++ V LA LPLVAT+ FL + ++ AH+ ++ ++ Sbjct: 173 IEVQRAEQPNMDAHVRQASV--LAAKLNLPLVATHPVQFLDQNEFTAHEARTCISEGEIL 230 Query: 241 SQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + R R ++EM +F+D+P AL+N+VEIA+RC+ +L++ P LP F + Sbjct: 231 ANPRRIKRFNERQRFTTQAEMAELFADMPNALQNSVEIAKRCNLMLELGKPKLPNFPTPD 290 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 I + L +A GLE RL + + + Y+ RL FE + I M F GY Sbjct: 291 GSSI----DEFLVKEAQRGLEGRLQHLYPDPEQREKNRERYQARLKFETDTIIHMGFPGY 346 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMP Sbjct: 347 FLIVADFIKWAKNNGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMP 406 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFCQ+ RD VI+YV+++YG + V+QI TFG++ AK A+RDVGR L Y+ D + Sbjct: 407 DFDIDFCQEGRDRVIQYVKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGIS 466 Query: 477 KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP P V++ AI ++ E + V +LLE++QK+EG+ R+ HA G++I Sbjct: 467 KLIPFKPGKLVTIADAIKEEPLLAERLENEEEVKQLLELAQKVEGIARNIGMHAGGVLIA 526 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L +++ ++ Sbjct: 527 PGKLTDFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDPA 586 Query: 595 KVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D SL +P +D +Y LLT T+ +FQLES GM+ L+ +PD EDIIALV+LYRP Sbjct: 587 MADFSLEKLPLNDRPSYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRP 646 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+D I + RK+G E+ P + +L ET G+++YQEQVMQ+AQ++ GYSL AD+ Sbjct: 647 GPMDLIPDFCRRKHG-ERFEYPDPRTEAILSETYGIMVYQEQVMQMAQVIGGYSLGGADL 705 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM + +E F +GA+KN +S A IF+L+ KFA YGFNKSHAAAYA++ Sbjct: 706 LRRAMGKKKAEEMAQHRELFRAGAAKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYALL 765 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVN------TPC 825 SY TA++K H+P F+AA+++L MD+ +KIK +D + ++PP +N TP Sbjct: 766 SYHTAYLKAHHPAAFMAANLSLAMDDTDKIKILVEDTLDVCGLTLLPPDINQSDYRFTPV 825 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 +I Y L A+KG G I+ A KPF L DFC RVD +++NRR ++SL Sbjct: 826 GVPGKKATQIRYGLGAVKGSGKGAIDAIVNARQGKPFVDLFDFCKRVDKRQINRRTIDSL 885 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGA DCF R LL S+ + A+ E + ++F + K S Sbjct: 886 IRAGAFDCFNIDRAVLLASVGFAMECAEQAEA--SANQVSLFGGDDSDMETPPEYVKASP 943 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + + E+ LGFY SGH D Y +R+ Sbjct: 944 WSDKQKLTEEKAALGFYLSGHLFDAYAEEVRR 975 >gi|171913486|ref|ZP_02928956.1| DNA polymerase III, alpha subunit [Verrucomicrobium spinosum DSM 4136] Length = 1155 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1037 (39%), Positives = 620/1037 (59%), Gaps = 43/1037 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL +H+ YS+L+GA+ + +++ K + PA+A+TD NLF A+EF Q+A AGI Sbjct: 2 SASFVHLHLHTEYSMLDGAVRIPDLMKKAKSLGMPAVAMTDHGNLFGAIEFYQEANKAGI 61 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +PIIGC++ + M + +T + ++ + LL + EGY L++LV+ +L D Sbjct: 62 KPIIGCEIYLAPGSMWEKKDVTGRKRSS-----HLTLLAANNEGYANLVKLVTLAHL-DG 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L++ +EGLI L+G SG I+ + A K + F +FG D Y Sbjct: 116 MYHKPRVDKEALKK-HSEGLICLSGCISGEINEFILTDREDEARKTVQEFIDIFGKDNFY 174 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + L H G + + + ++ E L +VA N+ FL++ED+EAHDV++ + + V Sbjct: 175 LELHNH-GMAQQQRCMLKLREFSREFGLKMVAANDVHFLNKEDHEAHDVMICIGTAANVH 233 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R +P+ Y K +M +F D EA + T+EIA +C+ L++ A + ++ + Sbjct: 234 DEKRLHYSPEVYFKTAEQMRELFEDFEEACDTTLEIAEKCNIKLKLDASSIEKYPQFPPP 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + Q E R G+ R + + + R+RLD+EL +I +M F+ YFLIV Sbjct: 294 EGQTRE-GYFRQLCEDGMIFRYGK---ERAMNDAMLRERLDYELGIINKMNFTSYFLIVW 349 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WA+ + IPVGPGRGS AGS+ AY+L ITD+ P+RF L+FERFLNP+R+S PD DID Sbjct: 350 DFIKWARDHGIPVGPGRGSAAGSLVAYSLGITDLCPIRFGLIFERFLNPERVSPPDVDID 409 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQ RR EVI YV+ YG V+ IITFG++ AK+ +RDVGR L Y DRL K+IP Sbjct: 410 FCQTRRPEVIEYVRQHYGERSVSHIITFGTMGAKSVVRDVGRVLGWSYGDADRLSKMIPT 469 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + L+ A+ + + A + S +L + + LEG+ R+A HAAGIVIGD+PL Sbjct: 470 ELN--IDLESAVEKNPELKAALENESSTQQLWQYATFLEGMTRNAGIHAAGIVIGDQPLD 527 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +P+ R ++ V QF M + G++K DFLGLKTLT+++ ++DF+ R +L Sbjct: 528 NFIPLTRGSEGEV-VAQFAMGPLTDVGMLKMDFLGLKTLTVIKDAVDFVRLRFPDFNLDA 586 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L T+ +FQ+ES GM ++PD IE+IIAL++LYRPGP+D I Sbjct: 587 VPLDDKTTYEMLRKGETIAVFQMESGGMALTCRQLEPDKIEEIIALLALYRPGPMDLIPD 646 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK G++++ +HPL++ + KET G++IYQEQV + A LL+GYSL AD+LRRAMGKK Sbjct: 647 FIKRKKGEQRVEYLHPLLEDVSKETYGILIYQEQVQKAANLLAGYSLGAADLLRRAMGKK 706 Query: 721 IKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 EEM+KQ+ F+ G + N I A +IF+LL KFA YGFNKSH+AAY +++Y+TA++ Sbjct: 707 KPEEMEKQRTIFVKGCGETNQIPAKKANDIFDLLEKFAGYGFNKSHSAAYGIVTYRTAYL 766 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP-------CVDFKVGD 832 K +YPVEF+AA ++ E+++ +K+ F + ++ I I+PP VN C++ Sbjct: 767 KANYPVEFMAAVLSYEVNSTDKLAGFVSECQRMGITILPPDVNKSSLKFAPECIEGSDVP 826 Query: 833 NRIYYSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 N I Y LAA+K VG A I E + + PF SLEDFC+RVDS+ +N+R++E L+ G Sbjct: 827 NAIRYGLAAVKNVGEAAMAAAIAERTKNGPFTSLEDFCARVDSRMINKRLMEPLIKVGGF 886 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-----VE 946 D G R + LD + A +K R ++F + + K TL K + + Sbjct: 887 DWTGQDRAGMCFVLDEVLSNASSRQKERKAGMVSLFDDDT-MGATKNTLAKSAGPPPWKK 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSK 1004 + FE E +LGF+ SGHPLD Y+ I I + V ++ ++R+A ++ Sbjct: 946 EELMAFEKE--LLGFFVSGHPLDNYRHIYESKYITRIAD-VQEVKEERVSLRVAGLIQRL 1002 Query: 1005 QQKKTRKGSRIGWVTFS 1021 + K T+K +R + TF+ Sbjct: 1003 EVKYTKKDNR-AFATFA 1018 >gi|197123916|ref|YP_002135867.1| DNA polymerase III subunit alpha [Anaeromyxobacter sp. K] gi|196173765|gb|ACG74738.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. K] Length = 1210 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1080 (38%), Positives = 628/1080 (58%), Gaps = 84/1080 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +H+ YSLL+GA+ + ++L + A ++A+TD NLF A++F +KA AG++ Sbjct: 2 PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGK 126 PI+G + + ++G+T ++LL AEG+ L L S+ + + Sbjct: 62 PILGMEAYV-------AGDKGRTDRSERIGRHLILLAKNAEGWANLRYLSSKAFT-EGFY 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 RI L++ ++GL+ LT +G + R A + ++ +F ++ Sbjct: 114 YDPRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLE 172 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q + ++ +++ QL +PLV T ++ ++S ++ +AH+VLM +A + Sbjct: 173 VQSNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPK 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R D ++ EM + D EAL+NT+ IA C+ L + LP F E Sbjct: 233 RLRHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEG--- 289 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVAD 362 E++ + A GL+ R + K H +D YRQRL+ EL VI +M F GYFLIV D Sbjct: 290 -MSEDDYIDKLAREGLDRRFRE-IDGKYPHDRDVYRQRLEMELGVIKKMGFPGYFLIVQD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 348 FINWAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWHLLFERFLNPERVSMPDFDVDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P D Sbjct: 408 CQNRRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVP-D 466 Query: 483 PAH----PVSLQAIADDSRFREARLAD----PSV------DR----------LLEISQKL 518 P P+ D E RL + P+V D+ LL+I+ L Sbjct: 467 PVQGKTPPLKELVFGSDKMPAEPRLKELHDKPAVISQWVDDKGVQNKVTTKDLLDIAMSL 526 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R A HAAG+VI D+PL + VP Y+D +S++ V+QF + +E AGL+KFDFLGLKT Sbjct: 527 EGLNRQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKT 586 Query: 579 LTLLQKSLDFLAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 LT++ +L + + ++ S IP DD Y L++ T G+FQ+ESSG + + M Sbjct: 587 LTVIDDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKM 646 Query: 636 QPDCIEDIIALVSLYRPGPIDN--------IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 +P ED+IA +LYRPGP+D + VY +RK+G+EK+ H ++ +L+ T G Sbjct: 647 KPSRFEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHQSLEKVLEPTYG 706 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 VI+YQEQVMQI+Q+L+GYSL +AD+LRRAMGKK E M K++ F++GA NG+ + +A Sbjct: 707 VIVYQEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDEKVAG 766 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 IF+L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E N +K+ Sbjct: 767 GIFDLMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHIS 826 Query: 808 DARQFNIQIMPPSVNTPCVDF----------KVGDNRIYYSLAAIKGVGTTTARHIMEAS 857 +AR ++++PP VN F K RI + L A++GVG + + I+EA Sbjct: 827 EARASQLEVLPPDVNESDAAFGAFPPGPESPKGSRGRIRFGLGAVRGVGESAVQAIVEAR 886 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 A PF SL D RVDSKK+N++VLE+LV +GALD G R QL +D + Sbjct: 887 ASGPFKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAISAGASAQA 946 Query: 918 NRTNKHENIFAH--------------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +R + ++F G ++T+E++ VR E+ LGFY Sbjct: 947 DRASGQASLFGALAASAATEAKPRYPRPGDAVGEVTVEEWP---ERVRLAFEKEALGFYL 1003 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSE 1022 +GHPL Y+ +R+ G+ + + +V S +++ + KG+R G++T + Sbjct: 1004 TGHPLMGYEREVRRYASSTCAAVAQKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLED 1063 >gi|187918442|ref|YP_001884005.1| DNA polymerase III subunit alpha [Borrelia hermsii DAH] gi|119861290|gb|AAX17085.1| DNA polymerase III alpha subunit [Borrelia hermsii DAH] Length = 1147 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1031 (39%), Positives = 613/1031 (59%), Gaps = 66/1031 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA + +I+ K IA+TD NLF A+ F ++A GI+PI Sbjct: 7 FVHLHVHSDYSLLDGAAKITDIVAKAKKCNMSHIALTDHGNLFGAVRFYREAKRVGIKPI 66 Query: 71 IGCQLDID-MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-------- 121 IG + + + ++K ++ P+ ++LL GY+ L++L S YL Sbjct: 67 IGIEAYMSSISKHIKKNDEFGKPYY---HLILLAKNELGYKNLLKLTSISYLEGFYYRPR 123 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 +D+G E +EGLI + G I + N A+ +L FK +FGD Sbjct: 124 MDKGDI----------EKYSEGLICTSACIGGIIPQLILANRFDDAKNEILWFKSIFGDD 173 Query: 182 LYVNLQRHRGYDRYRESQVVQ---LAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAH 236 Y+ LQRH ++ +V ++Y+ EL PL +N+S +++ D A D+++ + Sbjct: 174 FYLELQRHG----IKQQDIVNEKLISYSRELNVPLTVSNDSHYVNRGDATAQDIIVCIGT 229 Query: 237 STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPR 294 S +R ++ D Y+K++ EM +F DLPEAL NT++IA +C+ F ++ PI P Sbjct: 230 GAKRSDPNRLKMETDEFYIKSQEEMCELFRDLPEALANTLKIAEKCNDFEIKFPGPIFPE 289 Query: 295 F-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + + E D + + L + GL+ R A ++R +EL+ I +M F Sbjct: 290 YQVPSEFDTLGQY----LEYLTLEGLKFRYAS-------ITDSIKERAFYELSTIIKMGF 338 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIV DFI++A N IPVGPGRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+ Sbjct: 339 EAYFLIVWDFIKFAHDNGIPVGPGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERV 398 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFDIDFC + RDEVI+YV KYG ++VAQIITFG+L+ KA +DVGR L +P+++ + Sbjct: 399 SMPDFDIDFCFEGRDEVIKYVTRKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFAESN 458 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 L KLIP+ P VSL+ + +D +E + L+E + LEG+ RH STHAAGIV Sbjct: 459 ELTKLIPDGPK--VSLREVFEDGSLKEYLNKGAVYNELMEAALVLEGMNRHVSTHAAGIV 516 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I PL+ VP+Y+D + D TQ+ M +E GL+K DFLGLKTLTL++ + + + Sbjct: 517 IARTPLTDYVPLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAENLIKITN 576 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 ++ I D +T+ +L+ + +FQ ES GM+Q L +PD IED+IAL +LYRPG Sbjct: 577 PDFSIANISDSDAKTFKMLSEGRSASVFQFESEGMQQVLREAKPDSIEDLIALNALYRPG 636 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+ I + K G ++I HP + +L+ T GVI+YQEQVM++A++++G+SL +AD+L Sbjct: 637 PMQFIPQFIAAKTGTKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIAGFSLGKADIL 696 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK ++EM+K K FI GA G +T+A +IFELL FA YGFNKSHAAAY++I+ Sbjct: 697 RRAMGKKKEDEMNKMKVDFIKGALSKGYDETLANDIFELLKPFAGYGFNKSHAAAYSLIA 756 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K +YP F+AA++T E++N EK+ + +A+ I ++ P +N +F++ + Sbjct: 757 YQTAYLKANYPENFMAANLTNEINNTEKLSYYIDEAKSMGIDVLKPDINQSFKEFRIVGH 816 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L IK +G I+ E + + S EDF RVD K +N++ LE+ + +G D Sbjct: 817 NISYGLNGIKNIGGLIVDLIIAERQENGEYKSFEDFIRRVDDKVINKKFLEAAIKSGLFD 876 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNK---HENIFAHEKGTFSDKITLEKFS---VE 946 G +R L ++LD K +V K++ +K ++F+ + S + +E FS E Sbjct: 877 SLGQNRKTLFENLD---KLIAFVAKDKNDKKLGQNSLFSSLE---SQDVIVESFSYHVFE 930 Query: 947 NSS----VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 S ++FE + +LGFY SGHPLD YK L++ E +A + ++ A + Sbjct: 931 EYSYPELLKFEKD--LLGFYVSGHPLDPYKSELKRFTNFNILEDLAVRKNTIVKFAGSLS 988 Query: 1003 SKQQKKTRKGS 1013 + + T+K + Sbjct: 989 TVKVIHTKKNN 999 >gi|328950095|ref|YP_004367430.1| DNA polymerase III, alpha subunit [Marinithermus hydrothermalis DSM 14884] gi|328450419|gb|AEB11320.1| DNA polymerase III, alpha subunit [Marinithermus hydrothermalis DSM 14884] Length = 1224 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/1094 (39%), Positives = 624/1094 (57%), Gaps = 87/1094 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL H+ YSLL+GA L ++++ K +PA+A+TD NL A++F +KA AAG++ Sbjct: 3 FAHLHQHTQYSLLDGAAKLQDLIEWVKQVTPDEPALAMTDHGNLHGAVDFYKKATAAGVK 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + + GK + +L GYQ L L SR YL + Sbjct: 63 PIIGYEAYVAAESRFD-RKMGKGLDGGYFHLTILAENFTGYQNLCRLASRAYL-EGFYMK 120 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L+E EGLI+L+G I + + +AE RL + ++FGDR ++ +Q Sbjct: 121 PRIDRELLRE-HNEGLIVLSGCLGAEIPQFILQDRLDLAEDRLKEYLEIFGDRYFIEIQD 179 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ + + + A + + +VATN+ ++ +ED EAH VL+A+ + +R R Sbjct: 180 HGLPEDKKVNAVLKEFARKYGIGMVATNDGHYVKKEDAEAHAVLLAIQSKSTWDDPNRWR 239 Query: 248 VTPDHYLKNRSEMVSIFSDLP------EALENTVEIARRCSFILQVHAPI---LPRF--- 295 D + E ++ + LP E +NT+EIARRC+ L V + +PR+ Sbjct: 240 FPCDEFYVKSPE--AMRAALPAEEWGDEIFDNTMEIARRCNVELPVGDKMVYRIPRYPLP 297 Query: 296 -----------------IEKECDDIQKEE--------------------------ENELR 312 +E+ D + + ELR Sbjct: 298 EGRDENQYLRELTFRGLLERYPDRVTEALYREFLKKLGRTPHGDAQALAAEIALLPKELR 357 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 KA A L +L +G G+ R ++EL+VI +M F GYFLIV D+I WAK I Sbjct: 358 EKAQAFLP-KLEEGLEWDGWAIL---ARAEYELSVIEQMGFPGYFLIVQDYINWAKNQGI 413 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS+ AYA+ IT+IDPL F+LLFERFLNP R++MPD D DF RRDEVI+ Sbjct: 414 SVGPGRGSAAGSLVAYAIRITNIDPLEFNLLFERFLNPARVTMPDIDTDFSDVRRDEVIQ 473 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YV+ +YG ++VAQI TFG++ +KAAL+DV R MP+ + + L KLIP P+ L Sbjct: 474 YVRERYGEDKVAQIATFGTMASKAALKDVARVFGMPHKRAEELAKLIPVQFGKPMPLAKA 533 Query: 493 ADD-SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 A+ R+A D V R+ E++++LEGL RHAS HAAG+VI PL+ LVP+ RD Sbjct: 534 AETIPEIRQAMEQDEQVRRVFEVARRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDTSG 593 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610 VTQ++M +E GL+K DFLGL+TL+ L+++ + + +GV++D IP DD +T+ Sbjct: 594 TGVVTQYDMGSVEALGLLKMDFLGLRTLSFLEEAKRIIRESKGVELDYDRIPLDDAKTFE 653 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670 LL T GIFQLESSGM + G++P I+DIIALVSLYRPGP+++I Y R +G+E Sbjct: 654 LLGRGETKGIFQLESSGMSSTVRGLKPRRIQDIIALVSLYRPGPMEHIPTYIRRHHGREP 713 Query: 671 IVSIH-----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 + ++P+L+ET G+ +YQEQ+MQIA ++GYSL EAD+LRRAMGKK EEM Sbjct: 714 VTYAEFPHAAKYLEPILRETYGIPVYQEQIMQIASAVAGYSLGEADLLRRAMGKKKVEEM 773 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 K + RF+ GA++ GI + A +F++L FA+YGFNKSHAAAY+++SYQTA++K +YPV Sbjct: 774 QKHRVRFVKGAAERGIPEDEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKANYPV 833 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+AA +T+E N +K+ ++ +DAR I ++PP +N DF+V I + L+A+K V Sbjct: 834 EFMAALLTVERRNSDKVAEYIRDARAMGIAVLPPDINRSGFDFRVVGQEILFGLSAVKNV 893 Query: 846 GTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G RHI+E PF SL DF RVD ++NRR ESL+ AGA D FG R ++L + Sbjct: 894 GEGAVRHILEERDRGGPFKSLADFLKRVDLHQVNRRAAESLIKAGAFDAFG-ERGRMLAA 952 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L+++ K+AQ ++++ +FA + + E + +R+E E L Y + Sbjct: 953 LESLMKWAQAEKESQAAGMMGLFA--GASTEPPLPEVPPLDEVTKLRYEKE--ALSIYVT 1008 Query: 965 GHPLDVYKPILRKMGIKGYEE--SVATIRGNNIR----LAAMVVSKQQKKTRKGSRIGWV 1018 GHPL Y+ LR+ EE +GN R LA MV S +K T+ G + Sbjct: 1009 GHPLLNYEG-LREAATCTIEELPRWYAEQGNGRRARALLAGMVESVVRKPTKSGGMMARF 1067 Query: 1019 TFSEPAKEYEANFF 1032 ++ E F Sbjct: 1068 NLADETGAVEVVVF 1081 >gi|150391763|ref|YP_001321812.1| DNA polymerase III DnaE [Alkaliphilus metalliredigens QYMF] gi|149951625|gb|ABR50153.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF] Length = 1155 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1057 (38%), Positives = 612/1057 (57%), Gaps = 56/1057 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+G ++N LD++ A+AITD ++F ++F + A GI+P Sbjct: 2 SFVHLHVHTQYSLLDGFATINQTLDRVKELGMDALAITDHGSMFGVVDFYKAAKKKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128 IIGC++ + MT++ + +VLL GYQ LI+LVS YL G Sbjct: 62 IIGCEVYTAARG---MTDKDPVKDKSQGHLVLLAKNNVGYQNLIKLVSESYL--HGFYYK 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 R+ + + + TEGLI L+ +G + R N + A+++ L +++FG Y+ LQ Sbjct: 117 PRVDYNEIAK-HTEGLIALSACLAGEVQRLILQNQYEKAKEKALMLEEMFGKGNFYLELQ 175 Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H+ ++ + +++++ +PLVATN+ + +ED EAHD+L+ + +++ + R Sbjct: 176 DHKLPEQQQVNEELIKMNQETGIPLVATNDVHYTDQEDAEAHDILLCIQTGKILNDEKRL 235 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ- 304 + D YLK + EM +F PEAL NTV+IA C LP + D+ Sbjct: 236 KFPNDQFYLKTQKEMAKLFDYAPEALANTVKIAEMCQVDFDFDTIHLPNY------DVAP 289 Query: 305 -KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 K ++ LR GL+ R + Q+ ++RL++EL +I +M + YFLIV DF Sbjct: 290 GKTKQGYLRELCYEGLQYRYKE-------ITQELKERLEYELGIIEQMGYMEYFLIVWDF 342 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK I VGPGRGS AGS+ AY L ITDIDP+R++L+FERFLNP+R+SMPD DIDFC Sbjct: 343 IKYAKDQGIAVGPGRGSAAGSIVAYTLGITDIDPIRYNLIFERFLNPERVSMPDIDIDFC 402 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+EVI YV+ KYG ++VAQIITFG++ A+ A+RDVGR + MPY++VD++ K IP Sbjct: 403 YERREEVINYVKAKYGQDKVAQIITFGTMAARGAIRDVGRVVNMPYNEVDQIAKEIPFTL 462 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ + R+ + + L+ +++KLEG+ RHASTHAAG+VI +PL Q + Sbjct: 463 GITIE-KALEVNPVLRKMYQENDDANYLIRMAKKLEGMPRHASTHAAGVVIAKKPLDQHI 521 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602 P+Y + + TQF M +E+ GL+K DFLGL+TLT+++ +L+ + A G++V Sbjct: 522 PLY--MHDNSMTTQFTMGTLEELGLLKMDFLGLRTLTVIRDALELIKANHGLEVSFEDSE 579 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 + D + Y L+ TLG+FQLES GM Q + ++PD EDI+A +SL+RPGP+++I Y Sbjct: 580 YTDPKVYELIGRGETLGVFQLESQGMIQFMRELKPDNFEDIVAGISLFRPGPMESIPKYI 639 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN EKI +H ++P+L T G ++YQEQVMQ+ + L+GYS +D++RRAMGKK + Sbjct: 640 EYKNNHEKIEYLHESLEPILNMTYGCMVYQEQVMQVVRDLAGYSYGRSDLVRRAMGKKKR 699 Query: 723 EEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+++++ F I G + GI + IA I++ + FA+Y FNKSHAA+YA Sbjct: 700 DVMEEERKYFIYGKESEAGELEIEGCIRRGIPENIANEIYDQMIDFANYAFNKSHAASYA 759 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 V+SYQTA++K HYPVEF+AA MT M N K+ + QD ++ ++I+ PS+N F V Sbjct: 760 VLSYQTAYLKCHYPVEFMAALMTSVMGNTLKVVHYIQDVKRQGMEILSPSINKSYSKFAV 819 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 DN+I + LAA+K VG I+E K F S DFC +V SK LN+R +ESL+ G Sbjct: 820 EDNQIRFGLAAVKNVGGNMIDAIVETRNHKGSFTSFTDFCQKVPSKDLNKRSIESLIKCG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVEN 947 A DC R QLL + + K +F G S ++ L N Sbjct: 880 AFDCLEVYRAQLLAIYEKVLDSVYHDRKRNIQGQLGLFEGPSGMPSNLNEGLLPNIKEFN 939 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----------RGNNIR 996 +R E+ VLG Y SGHPL Y+ L K + Y + G+ + Sbjct: 940 DKLRLNMEKEVLGLYISGHPLAAYEKELSK-KVSAYSNQLVLSLEEDDNEQEWKEGDRVI 998 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +V+ K K T+ + +VT + E FP Sbjct: 999 IGGIVIEKTIKTTKHQQIMAFVTVEDLFGVVECVVFP 1035 >gi|300690877|ref|YP_003751872.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07] gi|299077937|emb|CBJ50577.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07] Length = 1174 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/991 (40%), Positives = 597/991 (60%), Gaps = 38/991 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP FVHL++HS YS+++G + L+ + AAD A+A+TD N F + F ++A G+ Sbjct: 3 SPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P++G ++ +TN + P ++LLV +GY L L++R +L +Q + Sbjct: 63 KPVVGA--------DVWITNHDERDKPG--RLLLLVRNKQGYLNLCMLLARAWLSNQHRG 112 Query: 128 SVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 I W E G E GL+ L+G G I A + +A K + +F + Sbjct: 113 RAEIAPEWFGEPGVEDAPLATGLLALSGAMGGDIGMALANGNEALARKLAAQWSSVFPEA 172 Query: 182 LYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR G + Y + + V+LA + LP+VAT+ F++ +D+ AH+ + +A + Sbjct: 173 FYIELQRAGQAGTEAYVQ-RAVKLAASMHLPVVATHPVQFMTPDDFTAHEARVCIAEGDL 231 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D Y K + EM ++F+D+P AL N V+IA+RC+ L++ P LP F Sbjct: 232 LANPRRARRFTTDQYFKTQDEMCALFADIPSALANAVQIAQRCNLTLELGKPKLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L + A GLE R L + +Y RL+FE I +M F G Sbjct: 292 DGMSL----DDYLAHLAKQGLEQRMEVLFPDPAVREAKRPEYYARLEFETGTIIKMGFPG 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467 Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+L+ A ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527 Query: 535 GDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLA 590 L+ P+Y D V +Q++ +E GL+KFDFLGL TLT+L ++ + L Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + S IP D + +L T T+ +FQLES GM+ L+ +PD EDIIALV+LY Sbjct: 588 PSRADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL A Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM + + F +GA+K+G++ A IF+L+ KFA YGFNKSHAAAYA Sbjct: 708 DLLRRAMGKKKAEEMAEHRALFRAGAAKDGLTTEKADEIFDLMEKFAGYGFNKSHAAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFK 829 +++Y TAW+K H+P EF+AA+M+L MD+ +K+K DA N ++++PP +N F Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAEGKNGLKVLPPDINASQYRFT 827 Query: 830 VGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D + + Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV A Sbjct: 828 PTDAKTLRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVE 946 GA D +R QLL S+ + A + N+ ++F G +++ E + Sbjct: 888 GAFDSLNDNRAQLLVSI-GLAMEAAEQKAAAANQ-VSLFDLMSGDDAEEHRPELLDEAPW 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + + + E++ LGFY SGH D + +R+ Sbjct: 946 TTKRKLQEEKQALGFYLSGHLFDECRDEVRR 976 >gi|313680738|ref|YP_004058477.1| DNA polymerase III subunit alpha [Oceanithermus profundus DSM 14977] gi|313153453|gb|ADR37304.1| DNA polymerase III, alpha subunit [Oceanithermus profundus DSM 14977] Length = 1222 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1094 (38%), Positives = 614/1094 (56%), Gaps = 89/1094 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL H+ +SLL+GA L+ ++ K PA+A TD NLF A++F +KA AAG++ Sbjct: 3 FAHLHQHTQFSLLDGAAKLDELIQWVKQTTPDDPALATTDHGNLFGAVQFYKKATAAGVK 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + + T + K + LL +GYQ L+ L SR YL + Sbjct: 63 PIIGYEAYVAAESRFDRTMR-KGLDGGYFHLTLLAKDFKGYQNLVRLASRAYL-EGFYMK 120 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L+E EG+I L+G I + + +AE+RL + ++FGDR ++ +Q Sbjct: 121 PRIDREILRE-HNEGIIALSGCLGAEIPQFILADREDLAEERLNEYLEIFGDRYFIEIQD 179 Query: 189 HRGYDRYRESQVV--QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G + ++ V + A + L +VATN+ ++ +ED AH+VL+A+ ++ +DR Sbjct: 180 H-GLEEQKKVNAVLREFAQKYGLGMVATNDGHYVKQEDARAHEVLLAIQSKATLADEDRW 238 Query: 247 RVTPDH-YLKNRSEMVSIFSDLP-EALENTVEIARRCSFILQVHAPI---LPRFIEKECD 301 + D Y+K EM D P E N+ EIA C+ L V + +PR+ E Sbjct: 239 KFPCDEFYVKTPEEMKKALPDWPDEIFSNSAEIAAMCNVELPVGDKMTYRIPRYPLPEGR 298 Query: 302 DIQKEEENELRNKAVAGLEVRL---AQGAIAKGY-------HAQD--------------Y 337 D E LR GL R A+ + Y A+D Sbjct: 299 D----ENQYLRELTFKGLLERYPDRVNPALYRAYLTRLEIEPAEDEEDLILQLARLDRKA 354 Query: 338 RQRLDF---------------------ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 R+R+DF EL I +M F GY LIV D+I WAK + I VGP Sbjct: 355 RERVDFFPDVRNVQEWDGWATLARAEYELGTIEQMGFPGYLLIVQDYINWAKNHGISVGP 414 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGS AGS+ AYA+ IT+IDPL F LLFERFLNP R+SMPD D DF RRDEVI YV+ Sbjct: 415 GRGSAAGSLVAYAIRITNIDPLEFGLLFERFLNPARVSMPDIDTDFSDVRRDEVIDYVRE 474 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADD 495 +YG ++VAQI TFG+L +KAAL+DV R + Y + ++L KLIP P+ L +A+ Sbjct: 475 RYGEDKVAQIATFGTLASKAALKDVARVYGLEYKRAEQLAKLIPVQFGKPLPLARAMEQI 534 Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 + A D +V +LEI+Q+LEGL RHAS HAAG+VI D PL+ LVP+ RD R D V Sbjct: 535 PELKAAMRQDETVREVLEIAQRLEGLNRHASVHAAGVVIADEPLTNLVPLMRDTRGDGVV 594 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTT 614 TQ++M +E GL+K DFLGL+TL+ L ++ + + GV++D +P DD +T+ +L Sbjct: 595 TQYDMGSVEALGLLKMDFLGLRTLSFLDEAKRIVKESAGVELDYDNLPLDDPKTFEMLGR 654 Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674 T G+FQLE +GM ++ +P+ + DIIA+VSLYRPGP+DNI Y R++G+E + Sbjct: 655 GDTKGVFQLEGTGMTNTVKAFKPERLHDIIAIVSLYRPGPMDNIPTYLRRRHGQEPVSYA 714 Query: 675 H-----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +++P+L ET G+ +YQEQ+MQIA ++GY+L EAD+LRRAMGKK EE+ + Sbjct: 715 EFPHAAEMLEPILAETYGIPVYQEQIMQIASAVAGYTLGEADLLRRAMGKKKVEELKAHR 774 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +RFI+GA K G+ A IF+LL FA+YGFNKSHAAAY++ISYQTA++K H+PVEF+A Sbjct: 775 DRFITGAEKRGVPPDEASRIFDLLEAFANYGFNKSHAAAYSLISYQTAYVKAHFPVEFMA 834 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A +T+E N +K+ ++ +DA I ++PP +N DF+V I + L+A+K VG Sbjct: 835 ALLTVERRNSDKVAEYIRDAEAGGIHVLPPDINRSGADFRVVGREILFGLSAVKNVGEGA 894 Query: 850 ARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 I+ E PF SL DF RVD +N+R LESL+ AGA D FG R Q+L +++ + Sbjct: 895 VESILNEREKGGPFRSLPDFLRRVDLHHVNKRALESLIKAGAFDAFG-ERGQMLDAMEGL 953 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LEKFSVENSSVRFENEQRVLGFYFSG 965 K+A + + G F D +T L + + +R E+ LG Y +G Sbjct: 954 LKWA-------AAEQQKAAGGLTGLFDDGLTEPPLPETAPLEEVIRLRFEKEALGIYVTG 1006 Query: 966 HPLDVYKPILRKMGI-------KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 HPL+ Y P L + + YE++ + + LA MV ++ TR G + Sbjct: 1007 HPLEHY-PGLAEAATCQVTELARWYEQNSGSKSRVRVLLAGMVEQITRRSTRSGGMMARF 1065 Query: 1019 TFSEPAKEYEANFF 1032 ++ + E F Sbjct: 1066 NLADASGALEVVVF 1079 >gi|115380319|ref|ZP_01467326.1| DNA polymerase III alpha subunit [Stigmatella aurantiaca DW4/3-1] gi|115362676|gb|EAU61904.1| DNA polymerase III alpha subunit [Stigmatella aurantiaca DW4/3-1] Length = 1058 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1016 (40%), Positives = 597/1016 (58%), Gaps = 57/1016 (5%) Query: 52 LFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 +F+ ++F +KA AGI+PIIG + + + ++ ++L+ AEGY Sbjct: 1 MFATIDFYKKAKDAGIKPIIGMEAYVAGTKGREDRSE-----KVAHHLILVAQNAEGYAN 55 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L L S Y+ D RI L + ++GL LT G + A F A + Sbjct: 56 LRYLSSTAYM-DGFYYHPRIDKKVLAQ-HSKGLFALTACLGGEVTSACFRGDMDHARRAA 113 Query: 172 LTFKKLF-GDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 +K +F ++ +Q + ++ + ++ + QL+ ++PL AT ++ ++ ED AH+ Sbjct: 114 TEYKDIFEPGHFFLEVQSNGIPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHE 173 Query: 230 VLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 +LM +A +S R R + D Y+ + EM+ F D PEA+ NT IA +C+ L++ Sbjct: 174 LLMCIASGKTLSDGKRLRHSTDKLYVTSPQEMLEFFRDTPEAVHNTQVIADQCNLELKLG 233 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYRQRLDFELN 346 P+LP F + ++ + A GL R + A AK + + YR RL+ ELN Sbjct: 234 KPMLPTFKVPDS----HTPDSFMAELAFEGLHERFKELHHAGAK-FDPEMYRARLNLELN 288 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI +M FSGYFLIV DFI WAKK NIPVGPGRGSGAGS+ AYAL ITD+DPL ++LLFER Sbjct: 289 VIQKMGFSGYFLIVQDFINWAKKANIPVGPGRGSGAGSLVAYALRITDLDPLPYNLLFER 348 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPDFDIDFCQDRRDEVI+YV KYG V QIITFGSL+AK+ LRDV R Sbjct: 349 FLNPERVSMPDFDIDFCQDRRDEVIKYVSQKYGEMNVGQIITFGSLKAKSVLRDVCRVFG 408 Query: 467 MPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPS-----------VDRLLEI 514 +P+S+ DR+ KL+P ++L +AI ++R +E + PS +LEI Sbjct: 409 LPFSEGDRIAKLVPE--VLGITLKEAIEQEARLKEM-MEKPSNVGEVEGKPVTTKDVLEI 465 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + LEGL+R HAAG+VI D+PL + VP+Y+ +TQF +E AGL+KFDFL Sbjct: 466 ALALEGLHRQPGMHAAGVVIADKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFL 525 Query: 575 GLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 GLKTLT++Q +LD + + G K++ IP D + L+ T G+FQ+ESSG + Sbjct: 526 GLKTLTVIQNALDLINRNPPNGKKLERQDIPLHDELMWKLMADGDTAGVFQMESSGFTEM 585 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P C ED+IA +LYRPGP+D+ + V+ NRK+G+E + HP ++P+LK+T GVI Sbjct: 586 VMKLKPSCFEDVIAAGALYRPGPLDSGMVDVFINRKHGREPVTYPHPALEPVLKDTYGVI 645 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI+Q+L GY+L AD+LRRAMGKK E M ++ F+ G KN + +A I Sbjct: 646 VYQEQVMQISQVLGGYTLGRADLLRRAMGKKKAEVMQAERAGFLEGCKKNNVDLKVAGEI 705 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 F+L+ KFA+YGFNKSH+AAY +I+ TAW+K H+PVEF+AA +T E DN +K+ + +A Sbjct: 706 FDLMEKFAEYGFNKSHSAAYGLITIHTAWLKAHFPVEFMAALLTSEKDNTDKVVRHIGEA 765 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869 R+ Q++PP VN + F D +I + L AI GVG I+EA D F L DFC Sbjct: 766 REAGHQVLPPDVNQSDMAFGAVDGKIRFGLGAINGVGEGAIESIVEARKDGFFKGLFDFC 825 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA- 928 RVDS+++N++VLE+LV AGA D R QL ++++ +K++ ++F Sbjct: 826 ERVDSRRVNKKVLEALVKAGAFDFEKRPRRQLFETIERAMNRGSASQKDKAAGQSSLFGM 885 Query: 929 -------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 G D +E++ E + FE + +GFY SGHPL Y L++ Sbjct: 886 LAGPAAGGGGGMKDDYAQVEEWP-EKERLAFEKD--AIGFYVSGHPLHQYDKELKR---- 938 Query: 982 GYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 Y V ++ R I + +V + +++ T+ G R+ WVT + + E FP Sbjct: 939 -YARPVTSVQRARRDEKITVGGIVAALRERPTKTGKRMAWVTLEDLSGSIELVCFP 993 >gi|78044608|ref|YP_359983.1| DNA polymerase III DnaE [Carboxydothermus hydrogenoformans Z-2901] gi|77996723|gb|ABB15622.1| DNA polymerase III, alpha subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 1116 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1041 (39%), Positives = 615/1041 (59%), Gaps = 58/1041 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL HS YSLL+GA + +++ + + PA+A+TD NLF +EF ++A A GI+P Sbjct: 2 SFVHLHTHSCYSLLDGAGKIKDLVGRAVELKMPALALTDHGNLFGVIEFYKEAKAQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 I+G ++ + + T KTP + +VLL GYQ L+ LVSR Y + Sbjct: 62 ILGVEVYVAPR-----TRFDKTPKIDDQLTHLVLLAKDRTGYQNLLRLVSRSYT-EGYYY 115 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ L E ++GLI L+ +G I + A + ++ +FG + Y+ L Sbjct: 116 KPRVDKQLLAE-NSQGLIALSSCLAGEIPELILSGQREKAREVAGIYRDIFGKENFYLEL 174 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H + +++ L+ +PLVATN+ ++ +E + HDVL+A+ ++ R Sbjct: 175 QYHGISEQKVVNRELIALSKQLNIPLVATNDVHYILKEHAKTHDVLLAIQTGKSINDPGR 234 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + T + YLK EM IF +LP+AL+NT+ IA +C+ + +LP F E Sbjct: 235 MKFPTEEFYLKTPYEMELIFGELPDALKNTLNIAEQCNLEFEFGRYLLPDFPVPEG---- 290 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 K L+ GL R ++ + RL EL +I +M FSGYFLIV DFI Sbjct: 291 KTPAQYLKELCFQGLYKRYPN-------PGEEVKTRLLHELKIIEQMGFSGYFLIVWDFI 343 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A++ I VGPGRGS AGS+ AY L ITDIDPL++ LLFERFLNP+R+SMPD D+DFC Sbjct: 344 RYAREKGIMVGPGRGSAAGSLVAYTLEITDIDPLKYGLLFERFLNPERVSMPDIDVDFCF 403 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI Y+ KYG +RVAQIITFG++ AKAA+RDVGRAL PYS+VD++ KLIPN Sbjct: 404 ERRQEVIDYLYQKYGEDRVAQIITFGTMAAKAAVRDVGRALDWPYSEVDKIAKLIPN--V 461 Query: 485 HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++L+ AI + +P V LL++++++EG+ RHAS HAAG+VI + + + Sbjct: 462 LGITLEEAIETTPELKTLYQNNPKVRELLDLARQIEGMPRHASVHAAGLVIAPEEIDKHI 521 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602 P+++ + TQF +E+ GL+K D LGL+TLT+++K+LDF+ Q G +++L IP Sbjct: 522 PLFK-TSEGVVTTQFEKDTVEELGLLKIDLLGLRTLTVIEKALDFIKKQTGKEINLKDIP 580 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 DD +TY LL T+G+FQLES GMRQ L+ ++P IED+IALV+LYRPGP+ + +V Sbjct: 581 LDDEKTYKLLGEGDTVGVFQLESQGMRQILKELKPTSIEDLIALVALYRPGPLGSGMVED 640 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + NR++G+ + HP ++P+L+ET GVI+YQEQVM IA +L+G+SL EAD+LRRAMGKK Sbjct: 641 FINRRHGRVPVEYPHPDLEPILRETYGVIVYQEQVMLIASVLAGFSLGEADLLRRAMGKK 700 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 E + K FI + G + A IF L+ FA YGFNKSH+AAYA ++Y TAW+K Sbjct: 701 KPEIIAALKNDFIERSVARGYPREKAEEIFNLIEYFAGYGFNKSHSAAYAFVAYYTAWLK 760 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 ++PV FLAA + DN++K+ + +D ++ I+++PP +N VDF + I + LA Sbjct: 761 ANFPVAFLAALLISVKDNLDKVTVYAEDCQRRGIKVLPPDINLSEVDFTISGQEIRFGLA 820 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 A+K VG A I+E PF DF R+D K +N+RV+ESL+ AGA FG++R Sbjct: 821 AVKNVGEAAAAKIIEERQKGPFRDFNDFLHRIDKKTVNKRVIESLIKAGAFASFGFNRKT 880 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKITL---EKFSVENSSVRFEN 954 LL +LD+ ++ +K N G F +D+ L E+FS + +R E Sbjct: 881 LLNNLDDALEF--------YSKKSNGVQLTLGDFLPEADRYNLRLEEEFS-KLELLRMEK 931 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKG 1012 E LG Y +GHPL G++ + + ++ N I A++ ++ TR+G Sbjct: 932 ES--LGLYLTGHPL---------AGLRSFIQKHCNLKENKEKIYYPAILAEIKRTVTRRG 980 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + + + EA FP Sbjct: 981 EPMAFALLEGLNQTVEAVIFP 1001 >gi|238028202|ref|YP_002912433.1| DNA polymerase III subunit alpha [Burkholderia glumae BGR1] gi|237877396|gb|ACR29729.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1] Length = 1182 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1035 (40%), Positives = 610/1035 (58%), Gaps = 59/1035 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A + GI+ Sbjct: 4 PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARSKGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC ++ +TN P ++LLV GY L EL+S+ +L +Q + Sbjct: 64 PIAGC--------DVWITNHDDRDKPA--RLLLLVRDKSGYLNLCELLSKAWLTNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL+ GL+ L+G G I A +++ A + + ++F Y+ LQR Sbjct: 114 AEIDPQWLESELGGGLLALSGAQQGDIGIALAAGNNESARRHAQRWARVFPGSFYIELQR 173 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + V+LA +LP+VAT+ F+ +ED+ AH+ + ++ +++ R Sbjct: 174 YGQPGAEAYIQD-AVKLAAELKLPVVATHPLQFMEDEDFTAHEARVCISEGDILANPRRQ 232 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + ++EM +F+DLP A+ NTVEIA+RC+ +++ P LP F + + Sbjct: 233 KRFTTEQRFRTQAEMAELFADLPSAVLNTVEIAKRCNLTIELGKPKLPLFPTPDGMSL-- 290 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GLE RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 291 --DDYLVQLSKEGLEKRLVQLYPDEAERDAQRDTYYQRLDFECGTITKMGFPGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 409 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 468 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 469 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 P+Y V+Q++ +E GL+KFDFLGL TLT+L + F+ + K D SL Sbjct: 529 FCPLYAQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPTKADWSL 588 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 589 AQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 649 PSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y TAW Sbjct: 709 KKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAW 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGD----- 832 +K H+P EF+AA+MTL MD+ +K+K D I+++PP +N F+ VG+ Sbjct: 769 LKAHHPAEFMAANMTLAMDDTDKVKILFDDCVLNGIKVLPPDINQSEYRFEPVGEADGKR 828 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I Y L A+KG G I+ A + PF L DFC R+D + +NRR +E+L+ AGA Sbjct: 829 SKTIRYGLGAVKGSGQNAIEEILRARREGGPFKDLFDFCERIDRRMVNRRTVEALIRAGA 888 Query: 891 LDCFGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 D +R QLL S+ A + + H + E + DK Sbjct: 889 FDSLTPNRAQLLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEP-AWDDK--- 944 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 R + E+ LGFY SGH D Y+ +R+ E G + +A + Sbjct: 945 ---------RRLQEEKGALGFYLSGHLFDAYRAEVRRFARMKLGE---LKEGRDKLVAGV 992 Query: 1001 VVSKQQKKTRKGSRI 1015 + S + + T++G I Sbjct: 993 IASLRTQMTQRGKMI 1007 >gi|319942633|ref|ZP_08016941.1| DNA polymerase III alpha subunit [Sutterella wadsworthensis 3_1_45B] gi|319803812|gb|EFW00744.1| DNA polymerase III alpha subunit [Sutterella wadsworthensis 3_1_45B] Length = 1153 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1028 (39%), Positives = 592/1028 (57%), Gaps = 51/1028 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 L SP FVHL+ HS YS+ +G + ++ ++ + A+ I+D N+F L F A A Sbjct: 18 LMPSPRFVHLRFHSEYSITDGIVRIDPMIHAVLEGGGAAVGISDLMNVFGGLRFYTHALA 77 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI+GC L + N K N+ PF + +L EGY L L+++ +L + Sbjct: 78 AGLKPILGCDLKVI---NPKDLNK---PF----RLGVLCMNHEGYHSLSVLLTKAFLTNN 127 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + W + G+EGLI L+G + G + +A + FK F R YV Sbjct: 128 DAARGLVDPKWFDDGGSEGLIALSGAAQGELGSLLLGKKWALAHEAAERFKAQFPGRFYV 187 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR R D +++ A +LP+VAT+ FL ED+EAH+V ++A + Sbjct: 188 ELQRAGRPTDELATARLANFAVEEKLPVVATHPIQFLKPEDFEAHEVRCSIAEGYTLQDP 247 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF------- 295 R R TP+ YLK+ +EM +F+D+P A+ENTVEIA+RC+ + P LP F Sbjct: 248 RRVKRYTPEQYLKSEAEMCELFADIPAAIENTVEIAKRCNLDGVLSKPQLPLFPTPDGMS 307 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMK 352 ++ D + KE GL+ RL Y +RL++EL +I MK Sbjct: 308 LDDYIDQLSKE-----------GLQKRLEFLYPDPKVLEERRPPYDKRLEYELGIIKGMK 356 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIV DFI W+K + +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R Sbjct: 357 FPGYFLIVQDFINWSKTHGVPVGPGRGSGAGSLVAYSLGITDLDPLHFDLLFERFLNPER 416 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+DFCQ RD I YV+ YG + V+QI TFG+L AKA +RDVGRAL +PY + Sbjct: 417 VSMPDFDVDFCQYNRDRTIDYVKRTYGVDAVSQIATFGTLGAKAVVRDVGRALDVPYMKT 476 Query: 473 DRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 D L KLIP P +SL AIA+ F+EA D ++ +++ LEGL R+ HA G Sbjct: 477 DALAKLIPMQPGRNISLDDAIAEVPEFKEAIERDDEYKEIIRLAKPLEGLTRNLGMHAGG 536 Query: 532 IVIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 ++I L+ P+Y D R + ++QF+ K +E GL+KFDFLGL TL++L K+++ + Sbjct: 537 VLIAPGKLTDFCPLYNSDGRPENTISQFDKKDVENVGLVKFDFLGLTTLSILAKAVEIID 596 Query: 591 QRGVK--VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + + +L IP DD TY L T +FQ ES GMR L+ +PD +ED++AL + Sbjct: 597 KLYPEQHFELERIPVDDAATYELFQQANTAAVFQFESDGMRGLLKQARPDRLEDLVALNA 656 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I Y +RK G+EK+ + ++P+LKET G+++YQEQVM++AQ++ GYSL Sbjct: 657 LYRPGPMDLIPSYIDRKFGREKVEYLDDRMEPVLKETYGIMVYQEQVMRVAQVVGGYSLG 716 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM +Q+ FI GA + G+ +++A IF+L+ KFA YGFNKSHAAA Sbjct: 717 GADLLRRAMGKKNVEEMKRQRAVFIKGAGERGVKESVATEIFDLMEKFAGYGFNKSHAAA 776 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA++K H+ F AA++ + MD+ +K+K DAR + P VN F Sbjct: 777 YSYVAYQTAYLKVHHTAAFFAANLCMVMDDGDKMKALIDDARANGVDFRLPDVNVSEWFF 836 Query: 829 KV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V +N I L AIKG+ I+ E A+ PF+ + DF +RV+ +N R+ ES+V Sbjct: 837 SVPTENVIQLGLGAIKGINRALVEAIVSEREANGPFEDIFDFAARVEG--VNFRIFESMV 894 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D R +L ++ N + V + + +++F E+ K + E Sbjct: 895 RAGAFDSTDADRGKLFSNISNALQGGAAVRQ--SAGQDSLFGGEE----TKKIVNWVEGE 948 Query: 947 NSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 S R E E GF SGH D YK LR +G +E + N+ + ++ S Sbjct: 949 QWSFRRNLEEEMTAFGFSLSGHFFDEYKDDLRAIGCMPLDE--LQVSKENVCVGGVISSI 1006 Query: 1005 QQKKTRKG 1012 +Q ++G Sbjct: 1007 RQINGKRG 1014 >gi|152992163|ref|YP_001357884.1| DNA polymerase III subunit alpha [Sulfurovum sp. NBC37-1] gi|151424024|dbj|BAF71527.1| DNA polymerase III, alpha subunit [Sulfurovum sp. NBC37-1] Length = 1188 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1043 (38%), Positives = 616/1043 (59%), Gaps = 49/1043 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL +H+ YSLL+GA + + K+ ++A+TD N+F ++F GI+ Sbjct: 9 PQFTHLHLHTEYSLLDGANKIKALAKKVKELGMTSVAMTDHGNMFGTIDFYNTMRKEGIK 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + Q L G + L GY+ L+ L S+ Y+ + Sbjct: 69 PIIGMEAYVHNQPEL-----GDKSVRQRFHLCLYAKNEAGYKNLMFLSSKAYI-EGFYYY 122 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPI-------DRAFFFNSSQVAE-KRL-LTFKKLFG 179 RI + L+E EGL+ + G + +R F + E KR+ L +K++FG Sbjct: 123 PRINWNLLKE-HAEGLVCSSACLQGEVNWHLNLSERNLKFGAKGYEEAKRIALKYKEVFG 181 Query: 180 DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ L RH D++R + Q++QL+ + +VATN++ + + +D +AH+ M +A + Sbjct: 182 DDFYLELMRHGIGDQHRIDKQILQLSQETGIKIVATNDTHYTNPQDADAHEAFMCIAMNK 241 Query: 239 VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP--RF 295 + +R R + Y+K+ +M +F+D+PEALE T EI +C+ +++ P P +F Sbjct: 242 LYDDPNRLRHSVHEFYVKSPEQMAELFADIPEALEATQEIVDKCNLEIKLGNPTPPNFKF 301 Query: 296 IEKECDDI-----QKEEENELRNKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDF 343 ++ +I + E E L N + GL RL I Q+Y RL Sbjct: 302 AREKAKEIGLKLPEPEVEYSLENDKILFIEESKRGLVERLK---IVPEEKHQEYWDRLQV 358 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E+++I MKF GY LIV +F+ AK+ IPVGPGRGS AGS+ AYAL ITDIDP+ + LL Sbjct: 359 EIDIINNMKFPGYMLIVWEFVDAAKRMGIPVGPGRGSAAGSLVAYALRITDIDPMPYGLL 418 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD D+DFCQ RR E++ YV KYG VAQIITFG L AK +RDV R Sbjct: 419 FERFLNPERISMPDIDMDFCQARRQEILDYVVEKYGRVNVAQIITFGKLLAKGVIRDVAR 478 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLY 522 L MPYS+ D + KLIP++ + L+A + + + +E +DP R E + LEGL Sbjct: 479 VLDMPYSKADAMAKLIPDELG--IDLKASYEKEPKIKELLESDPQAKRTWEYALALEGLN 536 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A THAAG+VI + L Q P+++ D TQ++ K++E LIKFDFLGLKTLT++ Sbjct: 537 RNAGTHAAGVVISNEALWQKTPLFKPSGLDTLATQYSGKYVEDVDLIKFDFLGLKTLTVI 596 Query: 583 QKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +++L + +R G +++ +D + Y ++T TLG+FQ+ES+GM+ + ++P E Sbjct: 597 EEALQLVEKRHGKRINFVEENIEDPKVYDYISTGETLGLFQIESAGMQDLAKKLKPSSFE 656 Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ ++ + RK+G+ +I P ++P+LK T GVI+YQEQVMQI Sbjct: 657 DIIAMLALYRPGPMESGMLDDFVERKHGRAEITYAFPELEPILKPTYGVIVYQEQVMQIV 716 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q + G+SL AD++RRAMGKKIKEEMDK K+ F GA++ G + A ++F+L+ KFA Y Sbjct: 717 QTIGGFSLGGADLVRRAMGKKIKEEMDKLKDEFAEGAAEKGFDRAKAADLFDLIVKFAGY 776 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA++++ T+++K +YP EF+AA +TLE +N +K+ K+ + +Q I+++PP Sbjct: 777 GFNKSHSAAYAMVTFYTSYLKYYYPTEFMAAILTLEKNNTDKVVKYVDELKQMGIKLLPP 836 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 +N + F+ GD + + + AIKG G ++EA + F DF SR+DS Sbjct: 837 DINRSGLVFEATNIDGDEVVMFGMGAIKGAGDIAITSMLEAREEGAFRDFSDFVSRIDSS 896 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+N++V+ESL+ AGALD FGYSR +L +++I A+ + R ++F +G Sbjct: 897 KVNKKVIESLIKAGALDSFGYSRKAMLSQIEDIIDTAKKAGEARKMAVGSLFG--EGEEM 954 Query: 936 DKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 +TLE +E E E+ LGFY SGHPLD Y+ L + E G+ Sbjct: 955 TSVTLELSHMEEFEPMEILEMEKESLGFYVSGHPLDKYRETLESINYTLSSEIDDLADGS 1014 Query: 994 NIRLAAMVVSKQQKKTRKGSRIG 1016 + S +K ++KG++ G Sbjct: 1015 QALFIGKIESITEKISKKGNKFG 1037 >gi|203288019|ref|YP_002223034.1| DNA polymerase III, subunit alpha [Borrelia recurrentis A1] gi|201085239|gb|ACH94813.1| DNA polymerase III, subunit alpha [Borrelia recurrentis A1] Length = 1144 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/973 (41%), Positives = 591/973 (60%), Gaps = 35/973 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS +SLL+GA + +I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 7 FVHLHVHSDFSLLDGAAKIVDIVSKAKEYNMSHIALTDHGNLFGAIKFYREAKKAGIKPI 66 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ M + LK + ++LL +GY+ L++L S YL + R Sbjct: 67 IG--IEAYMSNTLKYIKKNDEFGKPYYHLILLAKNEQGYKNLLKLTSVSYL-EGFYYRPR 123 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + +EGLI ++ G I + N A+ +L FK FGD Y+ LQRH Sbjct: 124 MDRDDLAKY-SEGLICMSACIGGIIPQLILSNRFDDAKNEILWFKNTFGDDFYLELQRHG 182 Query: 191 GYDRYRESQVVQ---LAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 ++ +V +AY+ EL L +N+S ++++ED A D+++ + S R Sbjct: 183 ----IKQQDIVNEKLIAYSKELDVQLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDSGR 238 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECDDI 303 ++ D YLK+ EM +F DLPEAL NT++IA +C+ F ++ PI P + E D Sbjct: 239 FKMETDEFYLKSPEEMCELFKDLPEALANTLKIAEKCNDFEIKFPGPIFPEYHIPEEFDT 298 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 Q + L + + GL+ R A + ++R +EL+ I M F YFLIV DF Sbjct: 299 QGQY---LEHLTLEGLKFRYAN-------ITDNIKERAFYELSTIINMGFEAYFLIVWDF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A N+IPVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFC Sbjct: 349 IKFAHDNDIPVGPGRGSGAGSIVAYALRITDVDPLKYNLLFERFLNPERVSMPDFDIDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RDEVI+YV KYG ++VAQIITFG+L+ KA +DVGR L +P+ Q + + KLIP+ P Sbjct: 409 FEGRDEVIKYVTKKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFVQSNEITKLIPDGP 468 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 VSL+ + D ++ P + L+E + LEG+ RHASTHAAGIVI L+ V Sbjct: 469 K--VSLREVLKDKVLKKYLNKGPVYNELMEAALVLEGMNRHASTHAAGIVIARTSLTDYV 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+Y+D + D TQ+ M +E GL+K DFLGLKTLTL++ + + ++ I Sbjct: 527 PLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAEKLIKITDPDFSIATISD 586 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 D +T+ +L+ + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 587 SDAKTFKMLSEGRSTSVFQFESEGMQQILKDSKPDNIEDLIALNALYRPGPMQFIPQFVA 646 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 K G ++I HP + +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK ++ Sbjct: 647 AKTGAKRIKYPHPDLTEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKED 706 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM++ K FI GA + G +T+A +IFELL FA YGFNKSHAAAY++I+YQTA++K +Y Sbjct: 707 EMNRMKVDFIKGALEKGYDETLASDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKANY 766 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P F+AA++T E++N EK+ + ++ + I ++ P +N DF+V + I Y L IK Sbjct: 767 PASFMAANLTNEINNTEKLSYYIEETKSMGINVLRPDINQSFKDFRVVGSDISYGLNGIK 826 Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 +G I+ E + + S EDF RVD K +N++ LE+ + +G D G +R L+ Sbjct: 827 NIGELMVDLILNERQENGEYKSFEDFIKRVDKKVINKKFLEASIKSGLFDSLGQNRRTLI 886 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSVRFENEQRVL 959 ++LD + + + + ++FA + + TF+ + E +E + FE E +L Sbjct: 887 ENLDKLIAFVLENKNAKKQGQNSLFASQNILEETFNYNLFEEYSYLE--LLGFEKE--LL 942 Query: 960 GFYFSGHPLDVYK 972 GFY SGHPLD YK Sbjct: 943 GFYVSGHPLDPYK 955 >gi|302871937|ref|YP_003840573.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] gi|302574796|gb|ADL42587.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] Length = 1140 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1043 (37%), Positives = 622/1043 (59%), Gaps = 50/1043 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+AITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122 IIGC++ + +T F P+I VLL +GY+ L ++VS + + Sbjct: 62 IIGCEVYL----------APRTRFDKEPNIDNDIHHLVLLAIDNDGYRNLSKIVS-IGFV 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + R+ L + ++GL+ LT +G I + + + +K++FG+ Sbjct: 111 EGFYYKPRVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENF 169 Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y LQ H R+ +++++L+ +++PLVATN+ +L +ED HD+L+ + ++ Sbjct: 170 YFELQYHYIDEQRFVNNELMRLSKKYQIPLVATNDVHYLKKEDRNLHDILLCIQTGKTIN 229 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 DR T + YLK+ EM +F +PEAL+NT+EIA +C+ + LP+F E Sbjct: 230 DSDRMEFPTDEFYLKSSEEMHQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + E EL A+ G + R ++ + + RL EL VI M F YFLIV Sbjct: 290 KNDSFEYLKEL---ALEGFKKRYSK-------NNKTAYDRLMMELQVIKDMGFVEYFLIV 339 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +AK+NNI VGPGRGS AGSV AY L IT++DP+++ LLFERFLNP+R+SMPD DI Sbjct: 340 QDFINYAKQNNIMVGPGRGSAAGSVVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDI 399 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC RR EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP Sbjct: 400 DFCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIP 459 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P + +A+ + + + +V ++++ ++ LEG+ RHAS HAAG+VI + P++ Sbjct: 460 FSPGMTID-KALEINHELKRIYERNDTVRKIIDTARNLEGMPRHASVHAAGVVISNSPIT 518 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ R D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL Sbjct: 519 DLVPLAR--TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLD 576 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I ++D Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I Sbjct: 577 RIDYNDKNVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIP 636 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 VY KN +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM K Sbjct: 637 VYIQNKNNREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAK 696 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + + ++K+RFI GA NG+ K A IF ++ FA Y FNKSHAAAYA+++YQTA++ Sbjct: 697 KKADILMEEKDRFIEGAVANGVKKETAERIFAIIEDFASYAFNKSHAAAYAILAYQTAYL 756 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +Y +EF+ + +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L Sbjct: 757 KKYYTIEFMTSLITSVMNSNEKVGMYIEECRKFGITILPPDINKSSYDFTIEGNSIRFGL 816 Query: 840 AAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIK +G HI++ +K F L DF RVD+ +N+R++E+L+ +GA D +R Sbjct: 817 RAIKSLGENVIAHILKEREEKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTRINR 876 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR--FENEQ 956 LL S+++I V K K+ N F+ + + ++ + E S+ + + + E+ Sbjct: 877 NSLLASVEDI-----LVLKQAKKKNANQFSFFEISGNENESFEYKSLPQPTAQELMKMEK 931 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVSKQQKKTR 1010 +G Y S HPL+ Y + + + E ++T+ + I + ++ + K T+ Sbjct: 932 DTIGIYISSHPLERYTEEISRYNVTPLSE-ISTMSEEDEYKFEQILVCGILKEVKVKLTK 990 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 + + + E FFP Sbjct: 991 SNQTMAFAKLEDLTDSVEILFFP 1013 >gi|261408717|ref|YP_003244958.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10] gi|261285180|gb|ACX67151.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10] Length = 1241 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1052 (38%), Positives = 623/1052 (59%), Gaps = 46/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA + +++ + AA ++A+TD ++ A+ F + A GI+P Sbjct: 3 SFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAVPFYKACLAQGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+ I + ++ P + ++LL GY+ L++L S +L + Sbjct: 63 IIGCEAYITAGSRKERGSRKDQP---IYHLILLAKNETGYRNLMKLCSIGHL-EGYHYRP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI + L EG+I L+ G + + A+ L ++ +FG+ Y+ LQ H Sbjct: 119 RIDMEALA-AHHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGEDYYLELQDH 177 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ R Q++QL+ +PLVATN+ +L+E D E DVL+ + V +DR ++ Sbjct: 178 GMPEQKRVNPQLIQLSRETGIPLVATNDVHYLTENDAEVQDVLICIGTGKTVEDEDRLQI 237 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ S+M ++ +PEA+ NT +IA +C L+ ILP + K Sbjct: 238 QTNQLYLKSGSDMERLYPHVPEAILNTAKIADQCHLELEFGKSILPEY---SSLPEGKNA 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG-YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR+ ++GL R + + + QRLD+EL VI M FS YFLIV DFI + Sbjct: 295 AEYLRDLCLSGLRERYEETERWQDEVQRSELEQRLDYELGVIESMGFSDYFLIVWDFIAY 354 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A + I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF +R Sbjct: 355 AHRKGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDER 414 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+ VD+ KLIPN Sbjct: 415 RDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGIS 474 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + +E P V L++++ K+EG+ RHASTHAAGIVI PL+ VP+ Sbjct: 475 IE-RAMEQSPQLKEQYETKPKVRELIDMAMKVEGMPRHASTHAAGIVISREPLTDAVPL- 532 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 ++ +TQ++M+ +E GL+K DFLGL+TL++++++L ++ + G ++D +P DD Sbjct: 533 QEGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLKWIQELTGSELDFEQVPDDD 592 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 TY +L T G+FQLES+G+R+ L+ ++P EDI+++ +LYRPGP++ I + K Sbjct: 593 QATYEMLGRGETAGVFQLESAGIRRVLKDLKPSVFEDIVSVNALYRPGPMEFIPKFIQAK 652 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+ + HP + P+L +T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E + Sbjct: 653 HGRIEPEYPHPDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREVL 712 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F+SG+ K G ++ A +++++ +FA+YGF ++HAAAY V+++QTA++K HYPV Sbjct: 713 DRERSHFVSGSLKLGYTEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYPV 772 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGDNR----- 834 F+A+ +T M + K+ ++ +AR+ +I++MPP VN TP + + Sbjct: 773 PFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVMSRTAAEGSDKQAD 832 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I + LAAIK VGT +I+E +KPF+SL DFC RVD + N+RV+ESL+ A Sbjct: 833 SPAGGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQA 892 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D R QL+ LD + A K R + +F + D I + Sbjct: 893 GAFDSLQGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVETANWD-IEYPDIPPYTA 951 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-------KGYEESVATIRGNNIRLAAMV 1001 S + E E+ +LG Y SGHPLD ++ L + G + +ES+AT+ G MV Sbjct: 952 SQQLEFERELLGMYLSGHPLDGFEETLTESGADRLMDLHEAEDESMATVAG-------MV 1004 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 VS + T++G + ++ + + E FP Sbjct: 1005 VSLKTITTKQGKSMAFMECEDQIERCEVVLFP 1036 >gi|312622501|ref|YP_004024114.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis 2002] gi|312202968|gb|ADQ46295.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 1139 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1040 (38%), Positives = 611/1040 (58%), Gaps = 44/1040 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+ ITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKDLNMNAVGITDHGAMYGVIDFYKTAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122 IIGC++ + +T F P+I VLL +GY+ L ++VS + + Sbjct: 62 IIGCEVYL----------APRTRFDKEPNIDNDIHHLVLLAMDNDGYRNLSKIVS-IGFV 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + R+ L + ++GLI LT +G I + + + +K++FG+ Sbjct: 111 EGFYYKPRVDREVLSKY-SKGLIALTSCLAGEIPKLILREQKEKLYDAINFYKEVFGENF 169 Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y LQ H R+ +++++L+ +++PLVATN+ +L ED HD+L+ + +S Sbjct: 170 YFELQYHYIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTIS 229 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +R T + YLK+ EM +F +PEAL+NT+EIA +C+ + LP+F + Sbjct: 230 DSNRMEFPTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKF---QL 286 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + + L+ A+ G + R A A D RL EL VI M F YFLIV Sbjct: 287 PEGKSDAFEYLKELALEGFKKRYKNDDKA----AYD---RLMMELQVIKDMGFVEYFLIV 339 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DI Sbjct: 340 QDFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDI 399 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC RR EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP Sbjct: 400 DFCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMIP 459 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P + +A+ + ++ + V ++++ ++ LEG+ RHAS HAAG+VI P++ Sbjct: 460 FSPGMTID-KALEINHELKKIYEQNDMVRKIIDTARNLEGMPRHASVHAAGVVISSCPIT 518 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ R D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL Sbjct: 519 DLVPLAR--TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLD 576 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I ++D Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I Sbjct: 577 RIDYNDKNVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIP 636 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 VY KN +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM K Sbjct: 637 VYIQNKNNREKIGYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAK 696 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + + ++K+RFI GA NGI K A IF ++ FA Y FNKSHAAAYA+++YQTA++ Sbjct: 697 KKADILMEEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYL 756 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +Y +EF+A+ +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L Sbjct: 757 KKYYTIEFMASLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGL 816 Query: 840 AAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIK +G HI++ K F L DF RVD+ +N+R++E+L+ +GA D G +R Sbjct: 817 RAIKSLGENVIAHILKEREKKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGLNR 876 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 LL S+++I Q +K N ++ F G ++ + + + E+ Sbjct: 877 NSLLASVEDILAIKQAKKK---NANQFSFFEISGNENESFVYKNMPQPTAQELMKMEKDT 933 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-----QQKKTRKGS 1013 +G Y S HPL+ Y + K I E + + ++V + K T+ Sbjct: 934 IGVYISSHPLEKYTEEISKYNITPLSEISGMSEEDEYKFEQILVCGILKEVKVKLTKNNQ 993 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + + + E FFP Sbjct: 994 TMAFAKLEDLTDSVEVLFFP 1013 >gi|329929691|ref|ZP_08283383.1| putative DNA polymerase III subunit alpha [Paenibacillus sp. HGF5] gi|328935954|gb|EGG32411.1| putative DNA polymerase III subunit alpha [Paenibacillus sp. HGF5] Length = 1242 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1053 (38%), Positives = 625/1053 (59%), Gaps = 48/1053 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA + +++ + AA ++A+TD ++ A+ F + A GI+P Sbjct: 3 SFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAVPFYKACLAQGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+ I + ++ P + ++LL GY+ L++L S +L + Sbjct: 63 IIGCEAYITAGSRKERGSRKDQP---IYHLILLAKNETGYRNLMKLCSIGHL-EGYHYRP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI + L EG+I L+ G + + A+ L ++ +FG+ Y+ LQ H Sbjct: 119 RIDMEALA-AHHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGEDYYLELQDH 177 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ R Q++QL+ +PLVATN+ +L+E D E DVL+ + V +DR ++ Sbjct: 178 GIPEQKRVNPQLIQLSRETGIPLVATNDVHYLTENDAEVQDVLICIGTGKTVEDEDRLQI 237 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ S+M ++ +PEA+ NT +IA +C L+ ILP + K+ Sbjct: 238 QTNQLYLKSGSDMERLYPHVPEAILNTAKIADQCRLELEFGKSILPEY---SSLPEGKDA 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ--DYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR+ ++GL R +G Q + QRLD+EL VI M FS YFLIV DFI Sbjct: 295 AEYLRDLCLSGLRERY-EGTERWQDEGQRSELEQRLDYELGVIESMGFSDYFLIVWDFIA 353 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A + I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF + Sbjct: 354 YAHRKGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDE 413 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+ VD+ KLIPN Sbjct: 414 RRDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGI 473 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + +E P V L++++ K+EG+ RHASTHAAGIVI PL+ VP+ Sbjct: 474 SIE-RAMEQSPQLKEQYETKPKVRELIDMAMKVEGMPRHASTHAAGIVISREPLTDAVPL 532 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 ++ +TQ++M+ +E GL+K DFLGL+TL++++++L ++ + G ++D +P D Sbjct: 533 -QEGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLRWIQELTGRELDFDQVPDD 591 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L T G+FQLES+G+R+ L+ ++P EDI+++ +LYRPGP++ I + Sbjct: 592 DQATYEMLGRGETAGVFQLESAGIRRVLKDLKPSVFEDIVSVNALYRPGPMEFIPKFIQA 651 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ + HP + P+L +T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E Sbjct: 652 KHGRIEPEYPHPDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREV 711 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D+++ F+SG+ K G ++ A +++++ +FA+YGF ++HAAAY V+++QTA++K HYP Sbjct: 712 LDRERSHFVSGSLKLGYTEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYP 771 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVGDNR---- 834 V F+A+ +T M + K+ ++ +AR+ +I++MPP VN TP + + Sbjct: 772 VPFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVMSRSAAEGSELQA 831 Query: 835 -------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 I + LAAIK VGT +I+E +KPF+SL DFC RVD + N+RV+ESL+ Sbjct: 832 DSPAGGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQ 891 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGA D R QL+ LD + A K R + +F + D I Sbjct: 892 AGAFDSLQGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVETANWD-IEYPDIPSYT 950 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-------KGYEESVATIRGNNIRLAAM 1000 +S + E E+ +LG Y SGHPLD ++ L + G + +ES+AT+ G M Sbjct: 951 ASQQLEFERELLGMYLSGHPLDGFEETLTESGADRLMDLHEAEDESMATVAG-------M 1003 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 VVS + T++G + ++ + + E FP Sbjct: 1004 VVSLKTITTKQGKAMAFMECEDQIERCEVVLFP 1036 >gi|312876042|ref|ZP_07736031.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311797240|gb|EFR13580.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 1140 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1041 (37%), Positives = 616/1041 (59%), Gaps = 46/1041 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+AITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGVMYGVIDFYKAAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLL 122 IIGC++ + +T F P+I +LL EGY+ L ++VS + + Sbjct: 62 IIGCEVYL----------APRTRFDKEPNIDNDIHHLILLAMDNEGYKNLSKIVS-IGFV 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + R+ L + ++GL+ LT +G I + + + +K++FG+ Sbjct: 111 EGFYYKPRVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENF 169 Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y LQ H R+ +++++L+ +++P+VATN+ +L ED HD+L+ + +S Sbjct: 170 YFELQYHYIDEQRFVNNELMRLSKKYKIPIVATNDVHYLRREDRNLHDILLCIQTGKTIS 229 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +R T + YLK+ EM IF +PEAL+NT+EIA +C+ + LP+F + Sbjct: 230 DSNRMEFPTDEFYLKSPEEMQQIFGYIPEALKNTLEIAEKCNVEFEFGKINLPKF---QL 286 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + + L+ A+ G + R ++ A A D RL EL VI M F YFLIV Sbjct: 287 PEGKSDAFEYLKELALEGFKKRYSKDDKA----AYD---RLMMELQVIKDMGFVEYFLIV 339 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DI Sbjct: 340 QDFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDI 399 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC RR EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP Sbjct: 400 DFCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIP 459 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P + +A+ + ++ + +V ++++ ++ LEG+ RHAS HAAG+VI P++ Sbjct: 460 FSPGMTID-KALEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISSCPIT 518 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ R D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL Sbjct: 519 DLVPLAR--TEDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLD 576 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I ++D Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I Sbjct: 577 RIDYNDKNVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIP 636 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 VY KN +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM K Sbjct: 637 VYIQNKNNREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAK 696 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + + ++K+RFI GA NG+ K A IF ++ FA Y FNKSHAAAYA+++YQTA++ Sbjct: 697 KKADILMEEKDRFIEGAMANGVEKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYL 756 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +Y +EF+ + +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L Sbjct: 757 KKYYTIEFMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGL 816 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIK +G I+ E F L DF RVD+ +N+R++E+L+ +GA D G +R Sbjct: 817 RAIKSLGENVIAQILKEREVKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINR 876 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 LL S+++I Q +K N ++ F G ++ + + + E+ Sbjct: 877 NSLLASVEDILVLKQAKKK---NANQFSFFEISGNENESFEYKNMPQPTAQELMKMEKDT 933 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVSKQQKKTRKG 1012 +G Y S HPL+ Y + K + E ++T+ + I + ++ + K T+ Sbjct: 934 IGIYISSHPLERYTEEISKYNVTPLSE-ISTMSEEDEYKFEQILVCGILKEVKVKLTKNN 992 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + + + E FFP Sbjct: 993 QTMAFAKLEDLTDSVEVLFFP 1013 >gi|312109934|ref|YP_003988250.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1] gi|311215035|gb|ADP73639.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1] Length = 1104 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1039 (40%), Positives = 623/1039 (59%), Gaps = 67/1039 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL V S YSLL +N+++ K Q PA+A+TD N L+ A+ F + GIQP Sbjct: 2 SFVHLHVRSCYSLLTSPAKINDLVKKAKDLQFPALALTDENVLYGAIPFYIECKRNGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG DI ++ G+ +P +VLL GYQ L+++ S + Q K Sbjct: 62 IIGMITDIVLE--------GEEAYP----LVLLAKNETGYQHLMKISSTI----QTKTRE 105 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + GLI LT G SG I+ A++ L +K++FG+ Y+++QR Sbjct: 106 GIPEKWLWHYRS-GLIALTPGKSGQIETLLAHGEIIKAKQVLERYKQIFGENFYLSVQR- 163 Query: 190 RGYDRYRE---SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 G ++ +E Q++ L PLVATN+ ++ +ED H L+AV TV+ + Sbjct: 164 -GENKRKEPYEQQLIALGEETNTPLVATNDVQYIEKEDAFVHRCLLAVKQGTVIETETA- 221 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKECDDI 303 + YL EM FSDLP A+EN+ +IA +C ++ + LP++ ++ DD Sbjct: 222 -AAGERYLTPPEEMTERFSDLPAAVENSGKIAEQCHLDIEFGSLKLPKYPVPTKESADDY 280 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 LR + GL R+ + YR+RL++EL+VI +M FS YFLIV DF Sbjct: 281 -------LRRLCMEGLHERVPSPS-------DRYRERLEYELSVIRQMGFSDYFLIVWDF 326 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 + +A+K I GPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF Sbjct: 327 MNFARKQGIVTGPGRGSAAGSLVAYTLYITNVDPIQYGLLFERFLNPERVSMPDIDIDFP 386 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRR+EVI+YV NKYG + VAQIITFG+ AKAALRD+G+ LQ+ ++ + K +PN Sbjct: 387 DDRREEVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDAKEMASILKHVPNK- 445 Query: 484 AHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 H +++Q D S FR+A + + R + + K+EGL RH STHAAG++I PLSQ+ Sbjct: 446 -HGITIQEAYDQSAAFRQAVQSSALIKRWVATAMKVEGLPRHTSTHAAGVIISSEPLSQI 504 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+ + +L +TQ+ M +E+ GL+K DFLGL+TLTLL+ + Q+ G +D+ I Sbjct: 505 VPLQQG-HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIRQQTGETIDVREI 563 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P D +TY L++ T GIFQLES GM++ L+ ++P EDI+A+ +LYRPGPID I Y Sbjct: 564 PLHDRKTYELVSEGDTNGIFQLESDGMKRVLKQLKPSQFEDIVAVNALYRPGPIDYIPSY 623 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+G+EK +HP + P+L T GV+IYQEQ+MQIA ++G+SL +AD+LRRA+ KK Sbjct: 624 IRRKHGEEKAAYLHPDLAPILAPTYGVLIYQEQIMQIAAKIAGFSLGKADLLRRAVAKKK 683 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 KE +D+Q+ FI G + G ++ A ++++++ +FADYGFN+SHA AY+++SYQ A++K Sbjct: 684 KEILDQQRNAFIKGCMEKGYDESFANDLYDMIVRFADYGFNRSHAVAYSMLSYQLAYLKA 743 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP+ F AA +T + + EK+ + +ARQ I+++PPSVN F V +I YSLAA Sbjct: 744 HYPLYFYAALLTSVIGDEEKVALYVYEARQKRIELLPPSVNQSRYSFSVEQGKIRYSLAA 803 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 +K VG + I++ PF DFC R+ K +NR+ +ESLV +G D FG R L Sbjct: 804 VKHVGAAAVKAIVQERKKGPFSDFFDFCVRLFGKGINRKTIESLVLSGCFDEFGVERAAL 863 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE----NEQR 957 L S+D ++AQ V E+G FSD I+L+ VE + E +E+ Sbjct: 864 LASIDVALEHAQLVGPYV----------EEGMFSD-ISLKPKYVEAPAFSLEEKLMHEKE 912 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL--AAMVVSKQQK-KTRKGSR 1014 +LG Y S HP ++ + R + G ++ IR RL A + +++++K +T+KG Sbjct: 913 LLGVYVSPHPTSAHRKMFR---LAGARPVMSIIREKADRLVKAGVYIAQERKTRTKKGEE 969 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++T S+ + E +A FP Sbjct: 970 MSFLTISDESGEMDAVAFP 988 >gi|91202895|emb|CAJ72534.1| similar to DNA polymerase III, alpha subunit [Candidatus Kuenenia stuttgartiensis] Length = 1155 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1049 (39%), Positives = 622/1049 (59%), Gaps = 53/1049 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL VHS YSLL+GA + +++ K + PA+A+TD N++ A+EF + A +AGI+P Sbjct: 5 NFVHLHVHSEYSLLDGACKIKDLVSKALHFKMPALALTDHGNMYGAIEFYEAAQSAGIKP 64 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + + L K + GK T+ I LL EGY+ L++L + YL + Sbjct: 65 IIGYEAYVAQGGRLDKESKNGK---ETLSHITLLAENYEGYRNLLKLSTSAYL-EGFYYK 120 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 RI L+ + G+I L+G + I+R F+ A + + +LFG+ Y+ +Q Sbjct: 121 PRIDKELLKS-HSAGIICLSGCMASEINRHLSFDRHDDAMNLAIEYLELFGENHFYLEIQ 179 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ S ++ T +PLVATN+ +++ +D AHD L+ + VS + R Sbjct: 180 NNKIPLQEKLVSAAFKIGKTLNIPLVATNDVHYMNIDDAVAHDALLCINTGKRVSDRQRL 239 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + Y KN EM ++F ++P ALENT+ IA RC + LP+F E Sbjct: 240 RFDTNEFYFKNYQEMHALFKEIPHALENTLHIAERCDVKMDFGKLHLPKFTPPEG----- 294 Query: 306 EEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + NKA L +G I K G +RLD EL VI + F YFLIV DFI Sbjct: 295 -----ISNKAY--LRKLCEEGVIRKYGAILPHISERLDHELKVIEKTGFVEYFLIVWDFI 347 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A NIP GRGSGAGS+ AY L IT+IDP+ LLFERFLN +R+SMPD DIDFC Sbjct: 348 HYANTLNIP-ATGRGSGAGSIVAYVLNITNIDPIENDLLFERFLNAERISMPDLDIDFCA 406 Query: 425 DRRDEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + R+E+IRYV+ KYG + VAQIITFG+++AKA +RDVGR L +P S+VD++ KLIPN Sbjct: 407 EGREEIIRYVREKYGGDSNVAQIITFGTMKAKAVIRDVGRVLDIPLSEVDKIAKLIPNTL 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ + + A+ L +IS+KLEGL RHAS HAAGIVI D PL++ V Sbjct: 467 NITLE-EALEQEPALKAICQAEKQFKELFDISKKLEGLCRHASVHAAGIVISDEPLTEYV 525 Query: 544 PMYRDVRSDLPVTQF-NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601 P+ + + D TQ+ + ++K GL+K DFLG++ LT+++++L + + ++ DL+ I Sbjct: 526 PLAK--KGDAVTTQYYDEILVDKIGLLKADFLGVRKLTVIKRALQLIHETTREIIDLAKI 583 Query: 602 PFDDHETYHLLTTKGTLGIFQLESS-GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 P DD TY +L++ G+FQ+E+S G ++ L+ ++PD DI+ LV+LYRPGP+ + +V Sbjct: 584 PVDDKATYQMLSSGNVKGVFQVETSKGFKELLKKLKPDTFADILPLVALYRPGPLQSGMV 643 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + NRK+GKE + IHP ++ +LKET GVI+YQEQVM+IA L+G++L+EAD LR+AMG Sbjct: 644 DSFINRKHGKEAVEYIHPTLELILKETYGVILYQEQVMRIANRLAGFTLNEADNLRKAMG 703 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK E M K K++F++GA N I K A+ IFEL+ FA YGFNKSH+AAYAVI+YQTA+ Sbjct: 704 KKKPEIMAKFKDQFVNGAISNDIPKKTAIKIFELMEFFAGYGFNKSHSAAYAVITYQTAY 763 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYY 837 +KT+YP++++ A ++ E N EKI + +D R+ NI+I+ P VN DF + + N+I + Sbjct: 764 LKTNYPLQYMTAQLSCEKQNTEKIIDYIEDCRRMNIEILKPDVNESLSDFIISEGNKIRF 823 Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L ++K G I+ A F S+ DFC RVD + +N++V+ESLV +G+ D Sbjct: 824 GLGSVKNAGDKAIESIVSAREKGGKFSSILDFCKRVDLRTVNKQVIESLVKSGSFDSLSD 883 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R +LL SLD+ + V K + +F + G+ D I ++ N++ ENE Sbjct: 884 DRARLLASLDSAMELGSAVNKGKRKGQRALF--DIGSAMDVIETGNTAISNTTPWNENEI 941 Query: 957 R-----VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 R LGFYFS PL Y+ ++ + E G ++ + ++ ++ T+K Sbjct: 942 RQAEKESLGFYFSSSPLSEYEEKIKLLATNSSSEISELPEGTDVIIGGIITDIKKSTTKK 1001 Query: 1012 GSRIGWVT------------FSEPAKEYE 1028 G + ++T FS+ KEYE Sbjct: 1002 GDPMMYITLDDMEGAIKCIAFSKELKEYE 1030 >gi|149926718|ref|ZP_01914978.1| DNA polymerase III subunit alpha [Limnobacter sp. MED105] gi|149824647|gb|EDM83863.1| DNA polymerase III subunit alpha [Limnobacter sp. MED105] Length = 1176 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1061 (38%), Positives = 609/1061 (57%), Gaps = 60/1061 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL++H+ +S+L+G + + + A PA+AI+D +NLF ++F KA AG++P Sbjct: 11 TFVHLRMHTEFSVLDGMVRVGEAVKAAAGCGMPALAISDLSNLFGLIKFYGKARGAGVKP 70 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I C + I+ + + + ++LLV +GY +L EL+SR +L +Q + Sbjct: 71 IAACDVWIESDRDEEQPAR----------MLLLVQNHKGYLQLCELLSRAFLRNQKRGKA 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + W E+G +GLI ++G +S I + + AE F K F R Y+ LQR Sbjct: 121 TLKFEWFDEVGCDGLIAISGFASSDIGQFLLGGNMARAEDSARKFLKHFEGRYYIELQRD 180 Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 + QLA +LP+VAT+ FL ED+ AH+ + +A ++S RPR Sbjct: 181 GSTQAENLVNLSCQLAAKLQLPVVATHPIQFLKPEDFRAHEARVCIAQGEILSNPRRPRR 240 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T Y K EM +F+D+P A+ N++ IA+RC+ L++ P LP F + + Sbjct: 241 FTEQQYFKTAQEMAELFADIPSAIRNSIRIAQRCNLTLELGKPKLPAFPTPDGMTL---- 296 Query: 308 ENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++ L + + GLE RLA + +Y RL E + I M F GYFLIV DFI Sbjct: 297 DDYLVHLSKEGLEKRLAHLFPSIEEREKMRPEYEARLKIECDTIIGMGFPGYFLIVQDFI 356 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 W KKN +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 357 NWGKKNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVSMPDFDIDFCQ 416 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D RD VI YV+ YG + V+QI TFG+L AKA +RD GR L MPY D L KLIP PA Sbjct: 417 DNRDRVIDYVKQNYGRDAVSQIATFGTLGAKAVIRDAGRVLDMPYMYCDGLSKLIPQTPA 476 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 P L +A+AD+ FRE + ++ +++ LEGL R+ HA G++I L+ Sbjct: 477 DPWDLDRAMADEPTFRERVENEDEAKEIIAVARPLEGLTRNVGMHAGGVLIAPGKLTDFC 536 Query: 544 PMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGVKVD 597 P+Y D +D V+Q++ +E GL+KFDFLGL+ LT+L ++ ++ QR + Sbjct: 537 PLYCADGSTDSVVSQYDKDDVEAVGLVKFDFLGLRNLTILDWAVRWVRENYEDQRDFR-- 594 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L +P DD Y L + T +FQ ES + + ++PD EDIIAL++L RPGP+ + Sbjct: 595 LEDLPLDDPAVYQLFSDGNTTAVFQSESRSAKDLEKKLKPDNFEDIIALMALNRPGPLGS 654 Query: 658 IVVYN-------NRKNGKEKI-VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 +V + K GK + HP ++ +LK T GVI+YQEQVM +AQ+L+GYSL Sbjct: 655 GMVDDFIARKKETSKTGKGRAEWYFHPKLEGILKSTYGVIVYQEQVMLVAQILAGYSLGG 714 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+E F +GA++ G+ +A +F+L+ KFA+YGFNKSH+AAY Sbjct: 715 ADLLRRAMGKKKPEEMAKQREIFTTGATERGVDPAVAKQLFDLMEKFAEYGFNKSHSAAY 774 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF----------NIQIMPP 819 A+I+Y TAW+K HYP EF+AASM+ +MD+ +K+K F +DA + ++ P Sbjct: 775 ALIAYHTAWLKAHYPAEFMAASMSSDMDDTDKVKIFVEDAMAMCQVPGKKAGTTVTMLGP 834 Query: 820 SVNTPCVDFKV----GDNR---IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871 VN F G+ R I Y L A+KG G I+ E +A+ PF SL DF R Sbjct: 835 DVNESNFRFTAVRIDGEKRASAIRYGLGAVKGTGQAACEAIVAERNANGPFTSLFDFVKR 894 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 VDSK++NRRV+E+L+ AGA D R +LL S ++A ++ T ++F + Sbjct: 895 VDSKQINRRVIEALIRAGAFDALNPDRAKLLASSGQAMEWAA--QQAATASQVSLFGEDL 952 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 G + +E + + + E+ LG+YFSGH + +R+ +K + ++ R Sbjct: 953 GGDAPPELVE-VPTWSEREKLQQEKAALGYYFSGHLFKADEANVRQF-VKLRLKDLSPGR 1010 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + +A ++ S + T++G ++ V + + E + F Sbjct: 1011 -DMVWMAGVIASLRTMMTKRG-KMAIVLLDDSTAQVELSIF 1049 >gi|308448573|ref|XP_003087689.1| hypothetical protein CRE_05365 [Caenorhabditis remanei] gi|308253615|gb|EFO97567.1| hypothetical protein CRE_05365 [Caenorhabditis remanei] Length = 1015 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1013 (39%), Positives = 594/1013 (58%), Gaps = 48/1013 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ A+D+ PA+AITD +NL +A++F K+ GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLIKAAASDEMPALAITDLSNLHAAVKFYNKSLGKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G + ++ N K T LL T +G++ L E+VSR ++ +G+Q Sbjct: 63 FGSVIRLN-DANHKAT--------------LLAMTNKGWRGLTEIVSRGFI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E + +++L G + + AE L + + FG+R+Y+ L R Sbjct: 106 PCVQKDWVLEQSQDIIVLL--GLHSDVGEMLCAAYPEKAEPLLEQWIEKFGNRVYLALTR 163 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + + V+LA + + +VA N+ F+ EDYEAH+ + +A V+ RP+ Sbjct: 164 TGRPLEESFNEEAVKLAAKYNIGVVAHNDVHFVRPEDYEAHEARVCIADGYVLGDSKRPK 223 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P+ Y K +EM+ +F+D+P A+ENT++IA+RC+ L++ LP + E I Sbjct: 224 HYSPEQYFKTSAEMIKLFADIPSAIENTLQIAKRCTVSLRLGFHDLPDYPIPEGHTIHSY 283 Query: 307 EEN------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ E R + +E R A + + Y +RL +EL +I +M F GYFLIV Sbjct: 284 FEHLSEIGLEERLDFLYPVETRDEDWAEIR----KPYDERLAYELGIINKMDFPGYFLIV 339 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFDI Sbjct: 340 MDFIQWSKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDI 399 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC RD+VI YV YG + V+QI TFG++ AK A+RDV R L Y DR+ K+IP Sbjct: 400 DFCIAGRDKVIDYVARHYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIP 459 Query: 481 NDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIG 535 P ++I + + ++ ++P D + E++ KLEG+ R+ HA G+VI Sbjct: 460 TKPLGLTLEESIEAEPQLKDIVTNPSNPDYDDAAEIWEMALKLEGITRNTGKHAGGVVIA 519 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592 ++ + + V QF+ +E AGL+KFDFLGL+ LT+++ ++ + +R Sbjct: 520 PTKITDYSAILCEADGTGRVAQFDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKRIQS 579 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +++S IP DD ++Y + T +FQ ES GM++ L+ +P E+IIA VSLYRP Sbjct: 580 DKPLNISNIPLDDPKSYAVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRP 639 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+D I + +R +G E +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD+ Sbjct: 640 GPMDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADL 698 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM KQ+ FI GA+K I + A +IF+ + KFA YGFNKSHAAAYA++ Sbjct: 699 LRRAMGKKKVEEMVKQRATFIEGAAKKDIDEGTANHIFDYMEKFAGYGFNKSHAAAYALV 758 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTAW+K HYP EF+AA M+ EM N + I D R N+ ++PPSVN F D Sbjct: 759 AYQTAWLKAHYPSEFMAAVMSSEMQNTDNIVFLIDDCRINNLVVLPPSVNMSFYQFYASD 818 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 N I Y L AIKGVG + ++++ D PF L DFC RVD KK+N+R LE+L+ AGA Sbjct: 819 VNTIIYGLGAIKGVGEQAMQSVIDSREQDGPFKDLFDFCHRVDLKKINKRTLEALIRAGA 878 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949 LDC G R L+ L + A+ NR ++F E+ ++ +S E Sbjct: 879 LDCLGIERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPAKPVKPWSDE--- 935 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 VR + E+ LG Y +GHP+DVY+ L+ E T RG A +VV Sbjct: 936 VRLKGEKDTLGLYLTGHPIDVYRADLKSFIPNKINELTLTRRGVTTVFAGLVV 988 >gi|315648837|ref|ZP_07901932.1| DNA polymerase III, alpha subunit [Paenibacillus vortex V453] gi|315275805|gb|EFU39157.1| DNA polymerase III, alpha subunit [Paenibacillus vortex V453] Length = 1143 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1055 (38%), Positives = 624/1055 (59%), Gaps = 52/1055 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA + +++ + AA ++A+TD ++ A+ F + A GI+P Sbjct: 3 SFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAIPFYKACLAQGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+ I + ++ P + ++LL GY+ L++L S + L+ Sbjct: 63 IIGCEAYITAGSRKERGSRKDQP---IYHLILLAKNEVGYRNLMKL-SSIGHLEGYHYRP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI + L EG+I L+ G + + A+ L ++ +FGD Y+ LQ H Sbjct: 119 RIDMEALA-AHHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGDDYYLELQDH 177 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ R Q++ L+ +PLVATN+ +L+EED E DVL+ + V +DR ++ Sbjct: 178 GIPEQKRVNPQLIALSRETGIPLVATNDVHYLTEEDAEVQDVLICIGTGKTVEDEDRLQI 237 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ SEM ++ +PEA++NT +IA +C+ L+ ILP + K Sbjct: 238 QTNQLYLKSGSEMERLYPHVPEAIQNTAKIADQCNLELEFGKSILPEY---SSLPEGKNA 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYR----QRLDFELNVIARMKFSGYFLIVADF 363 LR + GL+ R I + + + R QRL++EL VI M FS YFLIV DF Sbjct: 295 AEYLRELCLNGLQERYG---ITERWQDEALRSELEQRLNYELGVIENMGFSDYFLIVWDF 351 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +A + I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF Sbjct: 352 IAYAHRQGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFS 411 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RRDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+ VD+ KLIPN Sbjct: 412 DERRDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHL 471 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A+ + +E P V L++++ K+EG+ RHASTHAAGIVI PL+ V Sbjct: 472 GISIA-KAMEQSPQLKEQYETRPKVRELIDMAMKVEGMPRHASTHAAGIVISRDPLTDAV 530 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ ++ +TQ++M+ +E GL+K DFLGL+TL++++++L ++ + G +D IP Sbjct: 531 PL-QEGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLKWIQELTGGALDFEQIP 589 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D TY +L T G+FQLES+G+R+ L+ ++P EDI+++V+LYRPGP++ I + Sbjct: 590 DNDGNTYEMLGRGETTGVFQLESAGVRRVLKDLKPSAFEDIVSVVALYRPGPMEFIPRFI 649 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K+G+ H + P+L +T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK + Sbjct: 650 QVKHGQIDPEYPHEDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKR 709 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E +D+++ F+SG+ K G S+ A +++++ +FA+YGF ++HAAAY V+++QTA++K H Sbjct: 710 EVLDRERSHFVSGSLKLGYSEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAH 769 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCV---------- 826 YPV F+A+ +T M + K+ ++ +AR+ +I++MPP VN TP V Sbjct: 770 YPVPFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVVSQSESGSLDE 829 Query: 827 -DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 + I + LAAIK VGT +I+E +KPF+SL DFC RVD + N+RV+ESL Sbjct: 830 GSHHFTEGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESL 889 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGA D R QL+ LD + A K R + +F + T D I Sbjct: 890 IQAGAFDSLPGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVEATNWD-IEYPDIPP 948 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-------KGYEESVATIRGNNIRLA 998 + + E E+ +LG Y SGHPLD Y+ L + G + +ES+A + A Sbjct: 949 YTAGQQLEFERELLGMYLSGHPLDGYEDTLTESGADRLMDLHEAADESMAAV-------A 1001 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 MVV+ + T++G + ++ + + E FP Sbjct: 1002 GMVVTLKTITTKQGKAMAFMECEDQIERCEVVLFP 1036 >gi|312135078|ref|YP_004002416.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL] gi|311775129|gb|ADQ04616.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis OL] Length = 1140 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1042 (37%), Positives = 622/1042 (59%), Gaps = 48/1042 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+AITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61 Query: 70 IIGCQLDI------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 IIGC++ + D + N+ + +VLL +GY+ L +VS + ++ Sbjct: 62 IIGCEVYLAPRTRFDKEANID---------SDIHHLVLLAMDNDGYRNLSRIVS-IGFVE 111 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 R+ L + ++GL+ LT +G I + + + +K++FG+ Y Sbjct: 112 GFYYKPRVDREVLSKY-SKGLVALTSCLAGEIPKFILREQKEKLYDAISFYKEVFGENFY 170 Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 LQ H R+ +++++L+ +++PLVATN+ +L ED HD+L+ + +S Sbjct: 171 FELQNHYIDEQRFVNNELIRLSKKYQVPLVATNDVHYLKREDRNLHDILLCIQTGKTISD 230 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +R T + YLK+ EM +F +PEAL+NT+EIA +C+ + LP+F E Sbjct: 231 SNRMEFPTDEFYLKSPEEMHQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEGK 290 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E EL A G + R ++ A A D RL EL VI M F YFLIV Sbjct: 291 NDPFEYLKEL---AFEGFKKRYSKDDKA----AYD---RLMMELQVIKDMGFVEYFLIVQ 340 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +AK+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DID Sbjct: 341 DFINYAKQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDID 400 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RR EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP Sbjct: 401 FCYQRRQEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPF 460 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P + +A+ + ++ + +V ++++ ++ LEG+ RHAS HAAG+VI + P++ Sbjct: 461 SPGMTID-KALEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISNCPITD 519 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 LVP+ R D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL Sbjct: 520 LVPLAR--TDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDR 577 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I ++D Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I V Sbjct: 578 IDYNDKNVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPV 637 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y KN +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM KK Sbjct: 638 YIQNKNNREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKK 697 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + + ++++RFI GA NG+++ A IF ++ FA Y FNKSHAAAYA+++YQTA++K Sbjct: 698 KADILMEERDRFIEGAVANGVNRETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLK 757 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +Y +EF+ + +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L Sbjct: 758 KYYTIEFMTSLITSVMNSNEKVGMYIEECRRFGISILPPDINKSSYDFTIEGNSIRFGLR 817 Query: 841 AIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIK +G HI+ +K F L DF RVD+ +N+R++E+L+ +GA D G +R Sbjct: 818 AIKSLGENVIAHILSEREEKGTFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRN 877 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR--FENEQR 957 LL S+++I V K K+ N F+ + + ++ + E S+ + + + E+ Sbjct: 878 SLLASVEDI-----LVLKQAKKKNANQFSFFEISGNENESFEYKSLPQPTAQELMKMEKD 932 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVSKQQKKTRK 1011 +G Y S HPL+ Y + + + E ++T+ + I + ++ + K T+ Sbjct: 933 SIGIYISSHPLERYTEEISRYNVTPLSE-ISTMSEEDEYKFEQILVCGILKEVKVKLTKN 991 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 + + + E FFP Sbjct: 992 NQTMAFGKLEDLTDSVEVLFFP 1013 >gi|15677663|ref|NP_274824.1| DNA polymerase III, alpha subunit [Neisseria meningitidis MC58] gi|14194679|sp|Q9JXZ2|DPO3A_NEIMB RecName: Full=DNA polymerase III subunit alpha gi|7227081|gb|AAF42162.1| DNA polymerase III, alpha subunit [Neisseria meningitidis MC58] gi|316984432|gb|EFV63405.1| DNA polymerase III subunit alpha [Neisseria meningitidis H44/76] gi|325139647|gb|EGC62186.1| DNA polymerase III, alpha subunit [Neisseria meningitidis CU385] gi|325200888|gb|ADY96343.1| DNA polymerase III, alpha subunit [Neisseria meningitidis H44/76] Length = 1144 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/1045 (38%), Positives = 594/1045 (56%), Gaps = 62/1045 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + +AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I D PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVRIGNPD------APDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARTAALKYAAWFPDAFYMELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+SL+ A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLSLEKAMETEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIIDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D +I Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PDMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + S + E+ V+GFY SGHP Y +R++ + +++RLA V + Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTA 987 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028 + ++G +I +V+ + + + E Sbjct: 988 VRTMMGKRG-KIAFVSLEDLSGQVE 1011 >gi|261393166|emb|CAX50778.1| DNA polymerase III alpha subunit [Neisseria meningitidis 8013] Length = 1144 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1040 (38%), Positives = 593/1040 (57%), Gaps = 52/1040 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + +AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I D PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVRIGNPD------APDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAVALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M FSDLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGTIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D +I Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PDMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D +R LL ++D A +K +F + + + L + + S Sbjct: 880 AFDSIEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAI-EPVRLIDAPMWSES 936 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKK 1008 + E+ V+GFY SGHP Y +R++ + ++ +++RLA V + + Sbjct: 937 EKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTAVRTMM 992 Query: 1009 TRKGSRIGWVTFSEPAKEYE 1028 ++G +I +V+ + + + E Sbjct: 993 GKRG-KIAFVSLEDLSGQVE 1011 >gi|30249925|ref|NP_841995.1| dnaE1; DNA polymerase III (alpha chain) protein [Nitrosomonas europaea ATCC 19718] gi|30139032|emb|CAD85889.1| dnaE1; DNA polymerase III (alpha chain) protein [Nitrosomonas europaea ATCC 19718] Length = 1169 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/1000 (41%), Positives = 590/1000 (59%), Gaps = 67/1000 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS YS+++G + + + K PA+A+TD +NLF ++F Q A AGI+ Sbjct: 5 PVFIHLRLHSEYSVVDGIVRVEEAVAKARDVGMPALALTDLSNLFGLVKFYQCAFKAGIK 64 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC + + + N PF ++LL + GY L L+SR Y + + Sbjct: 65 PIAGCDVWVTNE------NDADRPF----RLLLLCQSFSGYLLLSRLLSRAYRENMCRGR 114 Query: 129 VRICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + SW +E GTEGLI L+GG G +++ A + LF R Y+ + Sbjct: 115 AELKKSWFREEDAGTEGLIALSGGGQGEVEQ-LLLADPPAAVTAAQQWADLFPGRFYLEI 173 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR R + ++ LA + +LP+VAT+ F+ ED+ AH+ + +A V+ + R Sbjct: 174 QRCGRPNEETSGYALLDLASSLKLPVVATHPVQFMRPEDFRAHEARVCIAQGYVLGDRRR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ T Y K +EM +F D+PEAL N+VEIARRCS +L++ LP F + Sbjct: 234 PKEFTGQQYFKTPAEMGELFRDVPEALANSVEIARRCSLMLELGVNRLPDFPTPAGISV- 292 Query: 305 KEEENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E LR A GLE RL Q + + Y+ RLDFE+ I +M F+GYFLIVA Sbjct: 293 ---EQHLRELAQTGLEARLLQSFPQVLQRDERRPIYQMRLDFEVETIIQMGFAGYFLIVA 349 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK++++PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFDID Sbjct: 350 DFIGWAKQHDVPVGPGRGSGAGSLVAYSLGITDLDPLLYDLLFERFLNPERVSMPDFDID 409 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR++VI YV+++YG E VAQI TFG++ AKA +RDVGR L +PY+ VD+L KL+P Sbjct: 410 FCQDRREQVIEYVRDRYGAESVAQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAKLVPF 469 Query: 482 DPAHPVSLQAIADDSRFREARLADP----------SVDRLLEISQKLEGLYRHASTHAAG 531 + + R+AR +P V LLE++++LEGL R+ HA G Sbjct: 470 ELGMTL-----------RKAREIEPLLNQRAEEEEDVRNLLELAERLEGLTRNVGMHAGG 518 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL----- 586 ++I ++ P+Y D V+Q++ +EK GL+KFDFLGL+TLT+L +++ Sbjct: 519 VLIAPGKITDFCPVYCADSGDAVVSQYDKDDVEKVGLVKFDFLGLRTLTILDRAVADIRQ 578 Query: 587 -------------DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 D + L I +D T+ L+ T+GIFQ ES GM+ L+ Sbjct: 579 YRAASPGSAVAEPDVQSAEESHFSLESISLEDAATFSLMAKGNTVGIFQFESRGMKDLLQ 638 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALV+LYRPGP+D I + RK+GK ++ + P + P+L T G++IYQE Sbjct: 639 RARPDRFEDLIALVALYRPGPMDLIPDFIERKHGK-RVDYLDPRLQPILGPTYGIMIYQE 697 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQIAQ++ GYSL AD+LRRAMGKK EEM +Q+ F+ GA +N +++ AV +F L+ Sbjct: 698 QVMQIAQVIGGYSLGGADLLRRAMGKKKVEEMAQQRAVFVEGAIRNEMAEADAVTLFGLM 757 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA+I+YQTA++KTHYP EF+AA M+ +MD+ +K+ F +D + Sbjct: 758 EKFAGYGFNKSHAAAYALIAYQTAYLKTHYPAEFMAACMSSDMDDTDKVNVFYEDCKLNG 817 Query: 814 IQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871 I I+PP +N F D++ I Y L A+KG G I++ F L DFC R Sbjct: 818 IVILPPDINESGYYFVPVDHKTIRYGLGAVKGSGEAAISAIVQVREQGSTFTGLFDFCRR 877 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 VD + +NRR +E+L+ AGA D +R LL+S+ N +YA+ + + ++F E Sbjct: 878 VDRRIVNRRTIEALIRAGAFDSVETNRAALLESVGNAMEYAE--QCSLAASQVSLF-DEN 934 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 + + + +NE+ LGFY SGHP D Y Sbjct: 935 TDLIQPPAITGVAQWPEREKLQNEKMALGFYLSGHPYDSY 974 >gi|148244870|ref|YP_001219564.1| DNA polymerase III alpha subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326697|dbj|BAF61840.1| DNA polymerase III alpha subunit [Candidatus Vesicomyosocius okutanii HA] Length = 1141 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1046 (37%), Positives = 629/1046 (60%), Gaps = 53/1046 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL S +S+ + ++ ++K+ +IA+TD +NLF+A++F QKA AA I Sbjct: 3 NPGFVHLHCQSEFSVENSVVRISKFIEKVQEIGMDSIALTDESNLFAAVKFYQKATAANI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G +++I ++ + S +LL +GY L EL+S Y QG+ Sbjct: 63 KPIFGARINIKDKEG------------ELYSGLLLCQDHQGYLNLSELISLSY--TQGRS 108 Query: 128 SVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ ++ + I +GLIM+ + + N A+++ ++ +F DR Y+ + Sbjct: 109 CERVSITQQELIDYNQGLIMIATPIYSDVAKYLISNKIVKAKQKSEFWQAIFVDRYYLGV 168 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR R +D ++LA + +VATN+ FL+E D++AH+ + ++ +++ R Sbjct: 169 QRTSRKFDEKHLHLCIKLALELGIAVVATNDVQFLNESDFDAHEARICISQGSLLDDTQR 228 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP-ILPRFIEKECDDI 303 R + +LK+ +M +FSDLPE LENT+E+A+RC+ ++ LP F E I Sbjct: 229 KRHFSNQQFLKSPKQMYKLFSDLPEILENTLELAKRCNVHFELFKKNYLPDFPIPEHLTI 288 Query: 304 QK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ EE+E GL RL + Y+QRL FEL++I +M FSGYFLIVA Sbjct: 289 EQFFSEESE------GGLVQRLKNLKV----DVNIYQQRLKFELDIIIQMGFSGYFLIVA 338 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+W+K+N+IPVGPGRGSGAGS+ AY L IT++DP++ LLFERFLNP+R+SMPD DID Sbjct: 339 DFIKWSKENDIPVGPGRGSGAGSLVAYVLGITNVDPIKHELLFERFLNPERVSMPDLDID 398 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRRDEVI YV +YGHE+V+QIIT+G++ AK +RDVGR L PY D++ K+IPN Sbjct: 399 FCTDRRDEVIGYVAKRYGHEKVSQIITYGTMAAKGVVRDVGRVLGHPYGFSDQISKMIPN 458 Query: 482 DPAHPVSLQAIADDSR-----FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 D + +A+++ + R ++ SV L+++S++LEGL R+ THA G+VI Sbjct: 459 DLRATLE-KALSEPEKGGSKELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAP 517 Query: 537 RPLSQLVPMYRDV-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 +S P+Y+ ++ V+QF+ +E GL+KFDFLGL LT++ K++ ++ +G+ Sbjct: 518 SKISDFCPVYKGYGENNSVVSQFDKDDVEAVGLVKFDFLGLSNLTVIHKAIKLISVKGLS 577 Query: 596 ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 ++L +P DD Y LL + T G+FQLES GMR L+ +Q D EDI+A+++LYRP Sbjct: 578 DEPINLDALPLDDKRVYKLLQSCDTTGVFQLESKGMRSYLKKLQADNFEDIVAMLALYRP 637 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+D +V Y N K+G + + HP+++ +LK T GV +YQEQVM+ AQ+++GYSL A Sbjct: 638 GPLDAGMVDDYINVKHGAQ-VKYPHPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGA 696 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM++Q+ F+ GA++ GI++ A IF+L+ KF+ YGFNKSH+ AYA Sbjct: 697 DLLRRAMGKKKASEMNRQRSVFVKGAAERGINEKKANEIFDLIDKFSGYGFNKSHSVAYA 756 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +SY TAW+K+HYP F+AA ++ MD+ +++ + RQ + + P+V +F + Sbjct: 757 YVSYHTAWLKSHYPAPFMAAVLSGVMDDTDRVSFTISEIRQMGLIVNGPNVCESNYEFSI 816 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D N + Y L AIKGVG ++ E S + + L +FCSR++ + LN+R +E+L+++ Sbjct: 817 LDKNTVLYGLGAIKGVGVALVDAVVFERSTNGTYKDLFEFCSRIEKRYLNKRAIEALIYS 876 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVEN 947 GA D G +R L+++ + A+ + + + +F+H + + + L FS + Sbjct: 877 GAFDILGVNRESLIKTYPIAIRQAEQKQSDYFSGQNGLFSHNE--YETRYLLAPSFSFKK 934 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPI-LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 R + E+ VLG+YF HP + Y L+ + + ++ + ++R+ A++ + Sbjct: 935 ---RLQLEKSVLGYYFDNHPTNEYTVADLKNINVV-LPSNIVFRKNRDVRVLALISDLRY 990 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + G RI +T + + A F Sbjct: 991 RSIKNGERIALITIEDGSASLNAVVF 1016 >gi|295399508|ref|ZP_06809490.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294978974|gb|EFG54570.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 1104 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1039 (40%), Positives = 623/1039 (59%), Gaps = 67/1039 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL V S YSLL +++++ K Q PA+A+TD N L+ A+ F + GIQP Sbjct: 2 SFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFPALALTDENVLYGAIPFYIECKRNGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG DI ++ G+ +P +VLL GYQ L+++ S + Q K Sbjct: 62 IIGMITDIVLE--------GEEAYP----LVLLAKNETGYQHLMKISSTI----QTKTRE 105 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + GLI LT G SG I+ A++ L +K++FG+ Y+++QR Sbjct: 106 GIPEKWLWHYRS-GLIALTPGKSGQIETLLAHGEIIKAKQVLERYKQIFGENFYLSVQR- 163 Query: 190 RGYDRYRE---SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 G ++ +E Q++ L PLVATN+ ++ +ED H L+AV TV+ + Sbjct: 164 -GENKRKEPYEQQLIALGEETNTPLVATNDVQYIEKEDAFVHRCLLAVKQGTVIETETA- 221 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKECDDI 303 + YL EM FSDLP A+EN+ +IA +C ++ + LP++ ++ DD Sbjct: 222 -AAGERYLTPPEEMTERFSDLPAAVENSGKIAEQCHLDIEFGSLKLPKYPVPTKESADDY 280 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 LR + GL R+ + YR+RL++EL+VI +M FS YFLIV DF Sbjct: 281 -------LRRLCMEGLHERVPSPS-------DRYRERLEYELSVIRQMGFSDYFLIVWDF 326 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 + +A+K I GPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF Sbjct: 327 MNFARKQGIVTGPGRGSAAGSLVAYTLYITNVDPIQYGLLFERFLNPERVSMPDIDIDFP 386 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRR+EVI+YV NKYG + VAQIITFG+ AKAALRD+G+ LQ+ ++ + K +PN Sbjct: 387 DDRREEVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDAKEMASILKHVPNK- 445 Query: 484 AHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 H +++Q D S FR+A + + R + + K+EGL RH STHAAG++I PLSQ+ Sbjct: 446 -HGITIQEAYDQSAAFRQAVQSSALIKRWVATAMKVEGLPRHTSTHAAGVIISSEPLSQI 504 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+ + +L +TQ+ M +E+ GL+K DFLGL+TLTLL+ + Q+ G +D+ I Sbjct: 505 VPLQQG-HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIRQQTGEMIDVREI 563 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P D +TY L++ T GIFQLES GM++ L+ ++P EDI+A+ +LYRPGPID I Y Sbjct: 564 PLHDRKTYELVSEGDTNGIFQLESDGMKRVLKQLKPSQFEDIVAVNALYRPGPIDYIPSY 623 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+G+EK +HP + P+L T GV+IYQEQ+MQIA ++G+SL +AD+LRRA+ KK Sbjct: 624 IRRKHGEEKAAYLHPDLAPILAPTYGVLIYQEQIMQIAAKIAGFSLGKADLLRRAVAKKK 683 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 KE +D+Q+ FI G + G ++ A ++++++ +FADYGFN+SHA AY+++SYQ A++K Sbjct: 684 KEILDQQRNAFIKGCMEKGYDESFANDLYDMIVRFADYGFNRSHAVAYSMLSYQLAYLKA 743 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP+ F AA +T + + EK+ + +ARQ I+++PPSVN F V +I YSLAA Sbjct: 744 HYPLYFYAALLTSVIGDEEKVALYVYEARQKRIELLPPSVNQSRYSFSVEQGKIRYSLAA 803 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 +K VG + I++ PF DFC R+ K +NR+ +ESLV +G D FG R L Sbjct: 804 VKHVGAAAVKAIVQERKKGPFSDFFDFCVRLFGKGINRKTIESLVLSGCFDEFGVERAAL 863 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE----NEQR 957 L S+D ++AQ V E+G FSD I+L+ VE + E +E+ Sbjct: 864 LASIDVALEHAQLVGPYV----------EEGMFSD-ISLKPKYVEAPAFSLEEKLMHEKE 912 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL--AAMVVSKQQK-KTRKGSR 1014 +LG Y S HP ++ + R + G ++ IR RL A + +++++K +T+KG Sbjct: 913 LLGVYVSPHPTSAHRKMFR---LAGARPVMSIIREKADRLVKAGVYIAQERKTRTKKGEE 969 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++T S+ + E +A FP Sbjct: 970 MSFLTISDESGEMDAVAFP 988 >gi|119953364|ref|YP_945573.1| DNA polymerase III subunit alpha [Borrelia turicatae 91E135] gi|119862135|gb|AAX17903.1| DNA polymerase III alpha subunit [Borrelia turicatae 91E135] Length = 1150 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1026 (40%), Positives = 608/1026 (59%), Gaps = 47/1026 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA + +I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 7 FVHLHVHSDYSLLDGAAKITDIVAKAKKCNMSHIALTDHGNLFGAMKFYREAKGAGIKPI 66 Query: 71 IGCQLDID-MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IG + + ++K ++ P+ ++ L GY+ L++L S YL + Sbjct: 67 IGMEAYMSSTSKHIKKNDELGRPYY---HLIFLAKNELGYKNLLKLTSVSYL-EGFYYRP 122 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI +++ +EGLI + G I + N A+ +L FK +FGD Y+ LQRH Sbjct: 123 RIDKEDIEKY-SEGLICTSACIGGIIPQLILANKFDDAKNEILWFKSVFGDDFYLELQRH 181 Query: 190 --RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 + D E V AY+ EL L +N+S ++++ED A D+++ + S +R Sbjct: 182 GIKQQDIVNEKLV---AYSRELNVSLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDPNR 238 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDD 302 ++ D YLK + EM +F DLPEAL NT++IA +C+ F ++ PI P + + E D Sbjct: 239 LKMETDEFYLKTQEEMCKLFRDLPEALANTLKIAEKCNEFEIKFPGPIFPEYQVPSEFDT 298 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + L + GL+ R A + R +EL+ I +M F YFLIV D Sbjct: 299 LSQY----LEYLTLEGLKFRYANVT-------DSIKDRAFYELSTIIKMGFEAYFLIVWD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI++A N IPVGPGRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDF Sbjct: 348 FIKFAHDNGIPVGPGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERVSMPDFDIDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RDEVI+YV KYG ++VAQIITFG+L+ KA +DVGR L +P+++ + L KLIP+ Sbjct: 408 CFEGRDEVIKYVTRKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFTESNELTKLIPDG 467 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P VSL+ + D + + L+E + LEG+ R+ STHAAGIVI PL+ Sbjct: 468 PK--VSLREVFKDKALKAYLNKGVVYNELMEAALVLEGMNRYVSTHAAGIVIARTPLTDY 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+Y+D + + TQ+ M +E GL+K DFLGLKTLTL++ + + + ++ I Sbjct: 526 VPLYKDYKQNTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAENLIRITNPNFSIANIS 585 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 D +T+ +L+ + +FQ ES GM+Q L +PD IED+IAL +LYRPGP+ I + Sbjct: 586 DSDVKTFKMLSEGRSASVFQFESEGMQQVLREAKPDSIEDLIALNALYRPGPMQFIPQFI 645 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K G ++I HP + +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK + Sbjct: 646 AAKTGTKRIRYPHPDLKEVLKPTYGVIVYQEQVMEVARIIGGFSLGKADILRRAMGKKKE 705 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +EM+K K FI GA G +T+A +IFELL FA YGFNKSHAAAY++I+YQTA++K + Sbjct: 706 DEMNKMKVDFIKGALSKGYDETLANDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKAN 765 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP F+AA++T E++N EK+ + ++A+ I ++ P +N +F V I Y L I Sbjct: 766 YPENFMAANLTNEINNTEKLSYYIEEAKSMGINVLKPDINQSFKEFSVVGLNISYGLNGI 825 Query: 843 KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K +G I+ E + + S EDF RVD K +N++ LE+ + +G D G +R L Sbjct: 826 KNIGGLIVDLIITERQENGEYKSFEDFIRRVDDKVINKKFLEAAIKSGLFDSLGQNRKTL 885 Query: 902 LQSLDNIQKYAQWVEKNRTNKH--ENIFAHEKGTFSDKI-------TLEKFSVENSSVRF 952 ++LD K +V K+R +K +N G+ D I E++S +RF Sbjct: 886 FENLD---KLIDFVIKDRNDKKLGQNSLFGSIGS-QDAIQQSFNYHVFEEYSYP-ELLRF 940 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA-AMVVSKQQKKTRK 1011 E E +LGFY SGHPLD YKP L + E +A + ++ A ++ V + + R Sbjct: 941 ERE--LLGFYVSGHPLDHYKPELERFTNFNVLEDLAVKKDTTVKFAGSLNVVRVIRTKRN 998 Query: 1012 GSRIGW 1017 +R+ + Sbjct: 999 NARMAF 1004 >gi|325475361|gb|EGC78546.1| DNA polymerase III [Treponema denticola F0402] Length = 1149 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1038 (39%), Positives = 594/1038 (57%), Gaps = 32/1038 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS +SLL+GA S+ + K Q A+A+TD N+F A+ F I+PI Sbjct: 5 FVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKPI 64 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC+ + + K T GK + ++LL GY+ L+ L S+ Y + Sbjct: 65 IGCEFYVAPESRFEKKETPGGKKYY----HLILLAKNETGYRNLMVLCSKGYT-EGMYYK 119 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L + EGLI L+ +G + + AE + ++++FG + ++ LQ Sbjct: 120 PRIDDELLTQY-AEGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQ 178 Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H + + S++ +++A +PLV TN+ ++ ++DY A D+LM + + + +R Sbjct: 179 DHGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRM 238 Query: 247 RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + Y K+ EM +F + PE + NTV IA C+ + PILP I K +D Sbjct: 239 QFEGSEFYFKSGEEMAQLFPEYPETILNTVRIAEMCNLEIPQPGPILP--IYKIPEDFSS 296 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 +E+ +R+ A GL+ R + + RL++EL+++ +M F GYFLIV DFI Sbjct: 297 KEDY-IRHLAEEGLKKRYP-------VITDEIKNRLNYELDIVIKMDFVGYFLIVWDFIN 348 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N +PVGPGRGSGAGS+ AY+L ITDIDPL+++LLFERFLNP+R+SMPDFD+DFC + Sbjct: 349 WAKNNGVPVGPGRGSGAGSILAYSLRITDIDPLKYNLLFERFLNPERVSMPDFDVDFCFE 408 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483 RR EVI YV+ KYG E V QIITFG+L+ KA ++DVGR L +P + V+ + KLIP P Sbjct: 409 RRQEVIEYVRQKYGDENVGQIITFGTLKPKAVVKDVGRVLNIPLADVNAITKLIPPKPLT 468 Query: 484 --AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 V+L+ D + DP L EIS LEG R++S HAAGIVIG L+ Sbjct: 469 DGIKEVTLKYAVDVVPELKEMAEDPQYKELFEISIALEGRNRNSSLHAAGIVIGKTALTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDL 598 VP+Y+D ++ TQF M IE GL+K DFLGLKTLTL++ + D + +RG K + Sbjct: 529 YVPLYKDSKTGKVATQFTMDLIENCGLVKMDFLGLKTLTLIKHTEDLIHKRGGEWRKFSI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I + D ET+ +L+ +FQ ES GM+ L+ +P +ED+IAL +LYRPGP+D I Sbjct: 589 GDIDYSDAETFKMLSEGLAAAVFQFESQGMQNILKRAKPSKMEDLIALNALYRPGPMDYI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + K KI P ++ +L ET GVI+YQEQVMQ+AQ ++GYSL +AD+LRRAMG Sbjct: 649 NQFIESKFDNSKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGYSLGQADILRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK E M +KE+FI GA + G S+ A IFE+L FA YGFNKSHAAAY+V+++QTA+ Sbjct: 709 KKKIEVMKTEKEKFIKGAQEKGFSREDADRIFEILIPFAGYGFNKSHAAAYSVLAFQTAY 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837 +K H+P EF+AA++T E+ + +K+ ++ +A + ++I+PP VN F V D I + Sbjct: 769 LKAHFPAEFMAANLTNEITSTDKLPEYIAEAEKMGLKILPPHVNLSDPYFSVSSDGNIIF 828 Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L IKGVG A ++E + + S DF R D N+R LE ++ G D G Sbjct: 829 GLLGIKGVGMQAAHELVEEREKNGRYKSFIDFLERNDLHTQNKRNLEVMIKTGCFDGLGQ 888 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFENE 955 R L+ +LD YA ++N + ++F FSD EK + E Sbjct: 889 ERSTLMVNLDGAVAYASQKKENESTGQGSLFEGSGIKEFSD-FVFEKIEEFPKKEKLRLE 947 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + ++GFY SGHPLD Y+ ++ L M+ +Q +T+KG+ + Sbjct: 948 KELMGFYISGHPLDEYRKVIDNSATLDISHLARATSKKRYVLVGMLTGVRQHQTKKGAMM 1007 Query: 1016 GWVTFSEPAKEYEANFFP 1033 G+ TF + + FFP Sbjct: 1008 GFGTFEDLNGTLDLVFFP 1025 >gi|239828024|ref|YP_002950648.1| DNA polymerase III subunit alpha [Geobacillus sp. WCH70] gi|239808317|gb|ACS25382.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70] Length = 1104 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1034 (40%), Positives = 617/1034 (59%), Gaps = 57/1034 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL V S YSLL +++++ K Q A+A+TD N L+ A+ F + GI+P Sbjct: 3 SFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFSALALTDENVLYGAIPFYMECKRYGIRP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG DI ++ G++ +P +VLL GYQ LI++ S + Q K Sbjct: 63 IIGMITDIVLE--------GESTYP----LVLLAKNETGYQHLIKISSTI----QTKTQE 106 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I WL GLI LT G SG I+ N A++ L +K++FGD Y+++QR Sbjct: 107 GIPEKWLWHY-RGGLIALTPGKSGQIETLLAHNEITKAKQLLERYKQIFGDDFYLSVQRG 165 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 ++ + Y E Q++ L+ PLVATN+ ++ +ED L+A+ V+ K Sbjct: 166 ENKQQEPY-EQQLIHLSNETNTPLVATNDVQYIEKEDAFVQHCLLAIKQGAVI--KTGMA 222 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQK 305 + YL + EM FSDLPEA+EN+ +IA +C + + LP++ EKE D Sbjct: 223 TDGERYLTSPEEMKKRFSDLPEAVENSRKIADQCHLHISLDTLKLPKYPVPEKENAD--- 279 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR + GL R++ + A Y +RL++EL+VI +M FS YFLIV DF+ Sbjct: 280 ---HYLRRLCLKGLYERVSSPSDA-------YIKRLEYELDVIQQMDFSDYFLIVWDFMN 329 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+K I GPGRGS AGS+ AY L ITDIDP+++ LLFERFLNP+R+SMPD DIDF D Sbjct: 330 FARKKGIVTGPGRGSAAGSLVAYTLYITDIDPIQYGLLFERFLNPERVSMPDIDIDFPDD 389 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+YV NKYG + VAQIITFG+ AKAALRD+G+ LQ+ +++ + K +PN H Sbjct: 390 RREEVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDSKEMENIIKYVPNK--H 447 Query: 486 PVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +++Q + S FR+A A + + + I+ K+EGL RH STHAAG++I PLSQ+VP Sbjct: 448 GITIQEVYHQSFAFRQAVQASSLLKQWIAIAMKVEGLPRHTSTHAAGVIISSEPLSQIVP 507 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603 + + +L +TQ+ M +E+ GL+K DFLGL+TLTLL+ + Q+ G +D+ IP Sbjct: 508 LQQG-HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIQQQTGKTIDVRSIPL 566 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY L++ T GIFQLES GM+ L+ ++P EDI+A+ +LYRPGPID I Y Sbjct: 567 DDRKTYELVSKGDTNGIFQLESDGMKHVLKQLKPSQFEDIVAVNALYRPGPIDYIPSYIK 626 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+E + +HP + P+L T GV+IYQEQ+MQIA ++G+SL +AD+LRRA+ KK KE Sbjct: 627 RKHGEENVSYLHPDLAPILAPTYGVLIYQEQIMQIAANIAGFSLGKADLLRRAVAKKKKE 686 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +D+Q+ F+ G G + A ++++++ +FA+YGFN+SHA AY+++SYQ A++K HY Sbjct: 687 ILDQQRNEFVQGCIDQGYDEGFANDVYDMIVRFANYGFNRSHAVAYSMLSYQLAYLKAHY 746 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P+ F A +T + + EK+ + +AR+ I+I+PPS+N F V +I YSLAAIK Sbjct: 747 PLYFYTALLTSVIGDEEKVSLYIYEARRKQIEILPPSINQSRYSFSVEHEKIRYSLAAIK 806 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG + I++ PF DFC R+ K +NR+ +ESL+ +G D FG R LL Sbjct: 807 HVGIAAVKAIVQERKKGPFADFFDFCVRLFGKGINRKTIESLILSGCFDEFGIERASLLA 866 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN----EQRVL 959 S+D ++AQ V E+G FSD I+L+ VE S+ E E+ +L Sbjct: 867 SIDVALEHAQLVGPYV----------EEGLFSD-ISLKPKYVEAPSLSLEEKLMYEKELL 915 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G Y S HP Y+ + R G++ + +++ +V +++ +T+ G + + T Sbjct: 916 GVYVSPHPTSAYRKVFRLDGVRSVMSVIREKTDFPVKVGVYIVEERKTRTKTGKEMAFFT 975 Query: 1020 FSEPAKEYEANFFP 1033 S+ + E + FP Sbjct: 976 VSDESGEMDVVAFP 989 >gi|83590706|ref|YP_430715.1| DNA polymerase III DnaE [Moorella thermoacetica ATCC 39073] gi|83573620|gb|ABC20172.1| DNA polymerase III catalytic subunit, DnaE type [Moorella thermoacetica ATCC 39073] Length = 1156 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1037 (39%), Positives = 616/1037 (59%), Gaps = 39/1037 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA + +++ PA+A+TD ++ A+EF + A GI+P Sbjct: 3 SFVHLHVHSEYSLLDGAGRIKDLVRAAGEMGMPALALTDHGVMYGAVEFYKAAREQGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IIGC++ + + + + P +VLL + A GY+ L LVS +L + Sbjct: 63 IIGCEVYVAPR-----SRHDREPHRDDYQYHLVLLATDATGYRNLTALVSAAFL-EGFYY 116 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ L ++GLI L+ +G + N A + +++FG + Y+ L Sbjct: 117 KPRVDRELLSR-HSQGLIALSACLAGEVPAHLLKNREDAAYEAATWLREVFGPENFYLEL 175 Query: 187 QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Q +G R+ ++V LA ++PLVATN+ ++ ++ AHDVL+ + + + Sbjct: 176 Q-DQGLPEQRQLNRRLVDLAARLKIPLVATNDVHYIRQDQARAHDVLLCIQTGKTLDDPN 234 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R T YLK+ +EM ++F ++P AL NT+ IA RC F LP + +D Sbjct: 235 RLRFPTAQFYLKSPAEMDNLFREVPSALANTLAIAERCHFDFTFGRLHLPAYQVPAGEDA 294 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVA 361 + LR + GL+ R Y D RQRL++EL +I +M + GYFLIV Sbjct: 295 A----SYLRRLSYEGLKRR---------YPHDDGTARQRLEYELGIIEQMGYPGYFLIVW 341 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A++ IPVGPGRGS AGS+ AY L IT IDPLR++LLFERFLNP+R+SMPD D+D Sbjct: 342 DMVNFARRRGIPVGPGRGSAAGSLVAYCLGITSIDPLRYNLLFERFLNPERVSMPDIDMD 401 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RRDEVI+YV KYG + VAQIITFG++ A+AA+RDVGR L +P +VDR+ K++P Sbjct: 402 FCFERRDEVIQYVLEKYGRDHVAQIITFGTMAARAAVRDVGRVLGLPLGEVDRIAKMVPM 461 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + ++L+ A+A +E+ + V LL+ ++ +EG+ RHAS HAAGIVI PL Sbjct: 462 ELG--ITLERALATSPDLKESYEGNREVRELLDTARAIEGMPRHASIHAAGIVITREPLI 519 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 +P+ + D TQ+ M+ +E+ GL+K D LGL+TLT++ + + + + G ++DL Sbjct: 520 HYLPLQKT--GDAVTTQYPMQAVEELGLLKMDLLGLRTLTVIGHAREAIRRNHGRELDLE 577 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P DD TY LL + T GIFQLESSGMR L+ ++P+ EDIIALV+LYRPGP+ + + Sbjct: 578 SLPLDDRPTYQLLASGETSGIFQLESSGMRAILKELKPERFEDIIALVALYRPGPLGSGM 637 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V + RK+G I +HP ++P+LK+T GVI+YQEQVM+IA L+G++L +AD+LRRAM Sbjct: 638 VEDFIKRKHGVTPISYLHPALEPILKDTYGVILYQEQVMRIASELAGFTLGQADLLRRAM 697 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK E + Q++RF++GA I + +A IFEL+ FA YGFN SH+AAYA+++YQTA Sbjct: 698 GKKKPEVLAAQRDRFLAGAEAKAIPRDVAQKIFELMEYFAGYGFNASHSAAYALVAYQTA 757 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP E + A ++ ++++K++ + + ++ I ++PP VN VDF V +I + Sbjct: 758 YLKAHYPAELMGALLSSVAEHLDKMEPYLAECQRLGIAVLPPDVNESGVDFTVTGRQIRF 817 Query: 838 SLAAIKG-VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAA+K I A PF SL DFC RVDS++ N+RV+ESL+ GA + Sbjct: 818 GLAAVKNAGRAAALAIIAAREAGGPFTSLLDFCRRVDSRQANKRVVESLIRCGAFNSINP 877 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R QLL LD + A +++R + ++ +D + + + E+ Sbjct: 878 NRRQLLAGLDECLEVAARRQEDRRSGQVSLMDLVPEEVNDPPLPQVTDFSRADI-LAMEK 936 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 +LGFY SGHPL+ Y P+L+K+ + G+ + + +V ++ TRKG + Sbjct: 937 ELLGFYLSGHPLEPYAPVLKKLTSHSLADLAEIADGSQVTIGGLVSGLRRLVTRKGDPMA 996 Query: 1017 WVTFSEPAKEYEANFFP 1033 +T + + + EA FP Sbjct: 997 VLTLEDFSGQVEAVLFP 1013 >gi|89100367|ref|ZP_01173231.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] gi|89084886|gb|EAR64023.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] Length = 1119 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1033 (37%), Positives = 619/1033 (59%), Gaps = 48/1033 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF+HL V+S+YSLL +S+ ++ + AIA+TD N ++ ++F ++ I+P Sbjct: 2 SFIHLHVYSAYSLLTSTVSVEQLVARAKQKGFSAIALTDRNVMYGTVQFYKECLKHSIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG DI+ K G +P +VLL +G+Q L+++ S + Q K Sbjct: 62 IIGLCADIESAGGEK----GPSP------LVLLAQNQDGFQNLLKISSTL----QTKADG 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 I + WL+ + GLI LT G G I++ + A + + + ++FG DR Y+ Q Sbjct: 108 GIPVKWLKHYSS-GLIALTPGLEGEIEQYIAGGEEEKALEAIRLYTEIFGKDRFYLAYQD 166 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + ++ +L+ H A N + +ED A + L+A+ + + ++R R Sbjct: 167 HGLPEEKKINRKLKELSVNHGFQTAAANQVFYAEKEDAFAQECLLAIKNGDKLQDENRFR 226 Query: 248 VTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + D +YLK EM +F++ EALENT++I +C+ +L++ LP++ E D Sbjct: 227 LQSDEYYLKTAEEMSEVFTESTEALENTIKIMEQCNVMLELDKKHLPKYPVPEGD----- 281 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L G R + + + +RQRL +EL +I +MKFS YFLIV DFI++ Sbjct: 282 ADTLLEELCWKGFAERYPEAS-------EVHRQRLLYELGIIKKMKFSDYFLIVWDFIKF 334 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 +++N I GPGRGS AGS+ +Y L ITD DP+ LLFERFLNP+R+SMPD DIDF R Sbjct: 335 SRENGILTGPGRGSAAGSMVSYVLYITDADPIEHELLFERFLNPERISMPDIDIDFPDHR 394 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVIRYV KYG VAQIITFG+L AKAA+RD GR + +++++ +LIP+ P Sbjct: 395 RDEVIRYVAKKYGELHVAQIITFGTLAAKAAMRDTGRVFGLNAKELEQVSRLIPSRPG-- 452 Query: 487 VSLQAIADDSRFREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +L+ +S A A+ S++ RL E + K+EGL RH STHAAG+VI + PL +VP+ Sbjct: 453 TNLKTAYKESEQLRAFTAESSLNKRLFETALKIEGLPRHTSTHAAGVVISEFPLVNVVPI 512 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 + + +TQ++M+ +E AGL+K DFLGL+ L+L++ L + ++ G K D+ IP D Sbjct: 513 QQG-HEGVYLTQYSMEHLEAAGLLKMDFLGLRNLSLIETILSSIQRKTGKKPDIKKIPLD 571 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY LL++ T G+FQLES GMR L+ ++P EDI+A+ +LYRPGP++NI + NR Sbjct: 572 DEKTYRLLSSGETTGVFQLESDGMRNVLKKLKPTRFEDIVAVNALYRPGPMENIPSFINR 631 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GKE I HP + P L++T GVI+YQEQ+MQIA ++G+SL EAD+LRRA+ KK K+ Sbjct: 632 KHGKEPISYPHPDLKPYLEKTYGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKQKDV 691 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D+++ F SGA +G + A +++L+ +FA+YGFN+SHA AY+ I+YQ A++K +YP Sbjct: 692 LDRERAHFASGAVSSGYDEKTAQEVYDLIVRFANYGFNRSHAVAYSFIAYQLAYLKANYP 751 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 + F+AA ++ N +K+ ++ ++ + + ++PPS+N+ F+ I YSLAA+KG Sbjct: 752 LNFMAALLSQASGNEDKLAQYIRELKHLGLTLLPPSINSSGYSFQAESGGIRYSLAAVKG 811 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G + + + A K F+ L DFC RV +K R++LE+ V +G+ D FG R LL + Sbjct: 812 IGASVLKDVFHARRQKRFEDLFDFCIRVPAKSATRKILEAFVHSGSFDEFGEDRAVLLAT 871 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN----EQRVLG 960 LD ++A+ V+ + + + E+ F+ D+ +++ EN +R E+ E+ LG Sbjct: 872 LDIAIEHAELVKPDESGQ-EDFFSE------DEFSIKPKYAENDPIRIEDKLQYEKEYLG 924 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y S HP+ VY +G+ + R NIR AA + ++ +T+KG + +++ Sbjct: 925 LYLSDHPVSVYAASFASLGVTQLADMEPGSR--NIRTAAYLSEVKKIRTKKGEAMAFLSL 982 Query: 1021 SEPAKEYEANFFP 1033 ++ + E EA FP Sbjct: 983 NDQSGEMEAVVFP 995 >gi|298369652|ref|ZP_06980969.1| DNA polymerase III, alpha subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282209|gb|EFI23697.1| DNA polymerase III, alpha subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 1144 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1046 (38%), Positives = 598/1046 (57%), Gaps = 64/1046 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + +AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 P+ + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PVGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARSAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P++ D+L KL Sbjct: 407 DVDFCQSNRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGKIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N +I Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVQLIDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002 + + S + E+ V+GFY SGHP Y +R++ + ++ +++RLA V Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVT 986 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++G +I +V+ + + + E Sbjct: 987 AVRTMMGKRG-KIAFVSLEDLSGQIE 1011 >gi|157738461|ref|YP_001491145.1| DNA polymerase III subunit alpha [Arcobacter butzleri RM4018] gi|157700315|gb|ABV68475.1| DNA polymerase III, alpha subunit [Arcobacter butzleri RM4018] Length = 1187 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1052 (38%), Positives = 611/1052 (58%), Gaps = 56/1052 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL +H+ YSLL+GA + + K+ ++A+TD N+F A+ F GI+ Sbjct: 5 PQFTHLHLHTEYSLLDGANKIKPLAKKLKKLGMTSVAMTDHGNMFGAIAFYNAMRDEGIK 64 Query: 69 PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIG + I + +D TN+ + + L GY+ L+ L S+ Y+ + Sbjct: 65 PIIGMEAYIHNSEDISDKTNRQRY------HLCLYAKNEIGYKNLMYLSSQAYI-NGFYY 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKL 177 RI L+E +EGL+ G I +R F + + A+K L +K++ Sbjct: 118 YPRINKKILKE-NSEGLVCSAACLQGEINWHLNTQSERNVKFGAKGYEEAKKIALEYKEI 176 Query: 178 FGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 FGD Y+ + RH D+ + + Q+++L+ + +VATN++ +L ++D +AH+ M +A Sbjct: 177 FGDDFYLEIMRHGISDQLFVDDQILKLSKETGIKVVATNDTHYLEQKDADAHEAFMCIAM 236 Query: 237 STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + + +R R + + YLK+ ++ ++SD+PEA+E T EIA +C+ +++ P P F Sbjct: 237 NKLYDDPNRLRHSVHEFYLKSPEQIAKLYSDIPEAIETTQEIADKCNLTIKLGNPTPPNF 296 Query: 296 I-----EKECDDIQKEEENE--LRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRL 341 +E E +NE L N + GLE RL I H Q+YR RL Sbjct: 297 KFTRQKSQEAGLTLPEPDNEYSLENDKILFIHECRIGLEDRLK---IVPAEHHQEYRDRL 353 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ +I MKF GY LIV DF+ AK+ IPVGPGRGS AGS+ A++L ITDIDP+ + Sbjct: 354 EVEIEIINNMKFPGYMLIVWDFVIVAKRMGIPVGPGRGSAAGSLVAFSLKITDIDPIPYG 413 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D+DFCQ RR E+I YV +YG VAQIITFG L AK +RDV Sbjct: 414 LLFERFLNPERVSMPDIDMDFCQSRRGEIIDYVVQQYGRANVAQIITFGKLLAKGVIRDV 473 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 R L MPYS+ D + KLIP++ + + + + +E ADP R+ E + LEGL Sbjct: 474 ARVLDMPYSKADAMAKLIPDELGIDLK-NSWEKEPKIKELCEADPQAARVWEYALALEGL 532 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R+A THAAG+VI + PL + P+++ D TQ+N K+IE LIKFDFLGLKTLT+ Sbjct: 533 NRNAGTHAAGVVISNEPLWKKTPLFKPSGLDTLATQYNGKYIEDVDLIKFDFLGLKTLTV 592 Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 ++++ + QR G +V+ +D Y L+ T T+G+FQ+ES GM+ + ++P Sbjct: 593 IEEANKLIEQRHGKRVNFITTDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKPSNF 652 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQEQ 694 EDIIA+++LYRPGP+++ ++ + RK+G+ KI H ++ P+L+ T GVI+YQEQ Sbjct: 653 EDIIAVLALYRPGPMESGMLDDFIERKHGRAKIDYFHDELESALKPILENTYGVIVYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VMQI Q + G+SL AD++RRAMGKKIKEEMD+ K F GA G ++ A +F+L+ Sbjct: 713 VMQIVQSVGGFSLGGADLVRRAMGKKIKEEMDRLKGEFADGAQNKGYTRAYAEELFDLIV 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+ + ++ + Sbjct: 773 KFAGYGFNKSHSAAYALVTFYTSYLKCYYPAEFMAALLTLEKDNTDKVVKYVDETKRLGL 832 Query: 815 QIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870 ++ PP +N + F G + + + AIKG G I+ A + PF L DF S Sbjct: 833 ELFPPDINKSDLVFSAKKIDGKEVVMFGMGAIKGAGDVAINAILNARGNAPFKDLPDFIS 892 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH---ENIF 927 R+D K+N+RV+ESL AGA D FGY+R L L+ I+K V K T K ++F Sbjct: 893 RIDGSKVNKRVIESLTKAGAFDSFGYTRKSL---LNQIEKIVDTVGKAATAKKMMTGSLF 949 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + I LE + + E E+ LGFY SGHPLD YK L K+ + Sbjct: 950 GDSEELTKIDIELEHLNEFDPKELLEFEKATLGFYVSGHPLDEYKKDLEKINFTLSSQID 1009 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G+ + S +K ++KG++ G V+ Sbjct: 1010 ELEDGSQALFVGKIESITEKTSKKGNKFGIVS 1041 >gi|119899497|ref|YP_934710.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119671910|emb|CAL95824.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 1172 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/993 (39%), Positives = 590/993 (59%), Gaps = 42/993 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++H+ YS+ +G + ++ + + AAD PA+ I+D NLF ++F + A G++ Sbjct: 11 PRFIHLRLHTEYSITDGIVQIDQAIAQAAADGMPAMGISDLANLFGMVKFYKGARGKGVK 70 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + N+ + P ++L+ + +GY +L EL+++ YL ++ + Sbjct: 71 PIIGV--------DAWIQNEAERDKPY--RVLLICKSRKGYGQLCELLTQAYLENKYRGR 120 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + W + + L+ L+G G + +A + +AE+ + +LF Y+ +QR Sbjct: 121 AEMRREWFENGAADELLCLSGAFFGDVGQAIVNGNIDLAERLAADWSRLFPGAFYIEIQR 180 Query: 189 --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G + Y +Q+A +LP+VAT+ FL+ +D++AH+ + +A V++ K RP Sbjct: 181 AGHPGTETYIR-HALQIANKLDLPVVATHPVQFLTPDDFQAHEARVCIAQGYVLADKRRP 239 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T YLK++ EM ++F+D+P+ALEN VEIA+RCS +Q+ LP F + + Sbjct: 240 RDFTEQQYLKSQDEMCALFADIPDALENAVEIAKRCSVTVQLGKNFLPLFPTPDGMTL-- 297 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L +A GLE RL Q + Y +RL FE + I +M F GYFLIVAD Sbjct: 298 --DDFLVQEAKKGLEERLVQLYPHPEEREKQRPRYEERLKFETDTIIQMGFPGYFLIVAD 355 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW K N +PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDF Sbjct: 356 FIQWGKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLEYALLFERFLNPERVSMPDFDIDF 415 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQD R VI YV+ +YG + V+QI TFG+L +KA +RDVGR L MPY DRL KL+P + Sbjct: 416 CQDNRYRVIEYVRERYGKDAVSQIATFGTLASKAVVRDVGRVLDMPYGLCDRLSKLVPIE 475 Query: 483 PAHPVSL-QAIADDSRFREARLAD----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 A PVSL +A + + E + D +V L +++Q LEGL R HA G++I Sbjct: 476 GAKPVSLARAYEMEPQIGEM-MKDGNDGEAVQTLWDLAQPLEGLTRGVGMHAGGVLIAPG 534 Query: 538 PLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595 L+ P+Y D PV+QF+ +E GL+KFDFLGL+ LT+++ +LD++ + G + Sbjct: 535 KLTDFCPLYIADGDDATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALDYVERLTGER 594 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VDL + F D Y +L T IFQ+ES GM++ L+ + PD EDIIA+++LYRPGP+ Sbjct: 595 VDLMSLGFQDPAAYQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPGPL 654 Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 + +V + RK G+++I HP + L+ T GVI+YQEQVMQI+Q++ GY+L AD+L Sbjct: 655 GSGMVDDFILRKKGQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGADML 714 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K + GA + G +A +F+L+ KFA+YGFNKSH AAYAV++ Sbjct: 715 RRAMGKKKPEEMAKHRATIADGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVT 774 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+ F+AA+M+ ++DN + +K F +D I I+PP VN F D Sbjct: 775 YHTAWLKAHHCAAFMAATMSSDLDNTDTVKIFFEDTLANKIAILPPDVNESDYRFVPVDR 834 Query: 834 R-IYYSLAAIKGVG----TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I Y L A+KGVG A KP+ L DFC RVD + +NRRV+E+L+ A Sbjct: 835 KTIRYGLGAVKGVGEPAVRAIIAARASGGAVKPYRDLFDFCERVDRRLVNRRVVEALIRA 894 Query: 889 GALDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 GA+D G R Q+L ++ + A+ + +F + Sbjct: 895 GAMDTLEGHRGRDRAQVLATVPLAMEAAE--QAAANALQGGLFDLVPEAAGAALEFADVR 952 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 R + E+ +GF+ SGHP + +KP +R+ Sbjct: 953 PWTERERLKEEKTAIGFFLSGHPFNAFKPEVRR 985 >gi|260655562|ref|ZP_05861050.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1] gi|260630010|gb|EEX48204.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1] Length = 1140 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1041 (38%), Positives = 627/1041 (60%), Gaps = 51/1041 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA+ ++ + A QPA+A+TD ++ A+EF Q +AG++PI Sbjct: 5 FVHLHVHTEYSLLDGAIRCGDLAARTAQWHQPAVAMTDHGVMYGAVEFFQACKSAGVKPI 64 Query: 71 IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IGC++ + +Q K ++ ++LL EGY L++LVS + D Sbjct: 65 IGCEMYVAPEGIQSREKRSHH----------LILLAKDDEGYHNLVKLVS-IANTDGFYY 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 RI L ++GLI + +G + A + ++ + G + Y+ + Sbjct: 114 KPRIDHDLLARY-SKGLIASSACLAGEVSSLLLAGEDGRAFETAQLYRDIMGPENYYLEI 172 Query: 187 QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 + ++ +++ V++A + PL+ATN+S +L+ ED++ H++L+ V + ++ R Sbjct: 173 MSNTLPEQVAANKLLVEMARRNGFPLIATNDSHYLNPEDFDWHELLLCVGTNKTINDPGR 232 Query: 246 PRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAP--ILPRFIEKECD 301 D YL++ EM + F +++P+AL NTVEIA RCSF ++ LP+F E + Sbjct: 233 MSFEVNDFYLRSPEEMWNFFGAEVPDALTNTVEIAERCSFEFKLKTGHYSLPKFDVPEGE 292 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + ++ L A AGLE RL G +Y QRL +EL +I++M FSGYFLI+A Sbjct: 293 TL----DSFLAKGARAGLEKRLG------GVIPPEYEQRLQYELGIISQMGFSGYFLIIA 342 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D IQ K +IP+GPGRGS AGS+ AYA+ IT++DPLRF L+FERFLNP+R+SMPD D D Sbjct: 343 DVIQACKNRHIPIGPGRGSAAGSLVAYAMRITELDPLRFGLIFERFLNPERISMPDIDTD 402 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 R+ +IRYV +KYG E V+QIITFG +++KAA++DVGRA+ +PY+ VD++ KL+P Sbjct: 403 VSDKGREALIRYVIDKYGVENVSQIITFGRMKSKAAIKDVGRAMGLPYADVDKVAKLVP- 461 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 D ++ +AI + DP V LL+ + K+EGL RH S HAAG+VI PL+ Sbjct: 462 DGVKSIA-EAIEQTPDLKSLNDEDPQVAELLDSASKMEGLARHCSQHAAGVVITPMPLTD 520 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSL 600 +VP+ R + + VTQF+M+ +E GL+K DFLGL+TL++L+ +L+ + + G V+L Sbjct: 521 VVPV-RKIGENQVVTQFSMEPVENLGLVKMDFLGLQTLSILEDALENIRENGKGNVNLEE 579 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD E + LL TLGIFQLES GMR+ + M PD D++A+++LYRPGP+++ +V Sbjct: 580 IPLDDPEVFKLLQNADTLGIFQLESPGMRRLIRRMVPDSFNDLVAILALYRPGPLESGMV 639 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y + K+G E++ +HP ++P+LKET GV++YQEQVM+ A +L+GY+L AD+LRRAMG Sbjct: 640 DQYVDCKHG-ERVHYLHPKLEPVLKETYGVVLYQEQVMKCASVLAGYTLGGADLLRRAMG 698 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK E M++Q+ F+ GA KNGI K A NIF+++ KFA YGFNKSH+AAYA+ISYQTAW Sbjct: 699 KKKIEVMNQQRAIFVEGALKNGIDKNSAENIFDIIQKFAGYGFNKSHSAAYALISYQTAW 758 Query: 779 MKTHYPVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 +KTHYP EF+AA +T ++ + + + ++ R I ++ P +N F I + Sbjct: 759 LKTHYPKEFMAAYLTSKIGAKKDVMASYVKEVRSSGIDVLAPDINESRSSFTAAGEVIRF 818 Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L A+ +G I+E+ A PF + DF +RVD + +N+ LESL+ AGA DCF Sbjct: 819 GLGAVSRMGENAVSAILESRKAGGPFKDMWDFVTRVDLRHVNKAALESLIKAGAFDCFST 878 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFEN 954 +R QLL++ + A + + + ++F G S D++ L ++ R Sbjct: 879 NRRQLLEAASPMVDAASRLHVD--DGQASLF----GDLSSLDRVELPDVPDDDLETRLAM 932 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR--LAAMVVSKQQKKTRKG 1012 E+ V+G Y SGHP+D ++ +++ + +A ++ A ++ +++ T++G Sbjct: 933 EKEVIGMYISGHPIDQFREVIQGQ-VNATASDLAHWHSQSVAPVFAGLLTEWKERITKRG 991 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 +G + + +E E FP Sbjct: 992 DAMGVLRLDDGEREVEVVCFP 1012 >gi|42528286|ref|NP_973384.1| DNA polymerase III subunit alpha [Treponema denticola ATCC 35405] gi|41819556|gb|AAS13303.1| DNA polymerase III, alpha subunit [Treponema denticola ATCC 35405] Length = 1149 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/1038 (39%), Positives = 594/1038 (57%), Gaps = 32/1038 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS +SLL+GA S+ + K Q A+A+TD N+F A+ F I+PI Sbjct: 5 FVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKPI 64 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC+ + + K T GK + ++LL GY+ L+ L S+ Y + Sbjct: 65 IGCEFYVAPESRFEKKETPGGKKYY----HLILLAKNETGYRNLMVLCSKGYT-EGMYYK 119 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L + EGLI L+ +G + + AE + ++++FG + ++ LQ Sbjct: 120 PRIDDELLAQY-AEGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQ 178 Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H + + S++ +++A +PLV TN+ ++ ++DY A D+LM + + + +R Sbjct: 179 DHGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRM 238 Query: 247 RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + Y K+ EM +F + PEA+ NTV IA C+ + PILP I K +D Sbjct: 239 QFEGSEFYFKSGEEMAQLFPEYPEAILNTVRIAEMCNLEIPQPGPILP--IYKIPEDFSS 296 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 +E+ +R+ A GL+ R + + RL++EL+++ +M F GYFLIV DFI Sbjct: 297 KEDY-IRHLAEEGLKKRYP-------VITDEIKNRLNYELDIVIKMDFVGYFLIVWDFIN 348 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N +PVGPGRGSGAGS+ AY+L ITDIDPL+++LLFERFLNP+R+SMPDFD+DFC + Sbjct: 349 WAKNNGVPVGPGRGSGAGSILAYSLRITDIDPLKYNLLFERFLNPERVSMPDFDVDFCFE 408 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483 RR EVI YV+ KYG E V QIITFG+L+ KA ++DVGR L +P + V+ + KLIP P Sbjct: 409 RRQEVIEYVRQKYGDENVGQIITFGTLKPKAVVKDVGRVLNIPLADVNAITKLIPPKPLT 468 Query: 484 --AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 V+L+ D + D L EIS LEG R++S HAAGIVIG L+ Sbjct: 469 DGIKEVTLKYAVDVVPELKEMAEDSQYKELFEISIALEGRNRNSSLHAAGIVIGKTALTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDL 598 VP+Y+D ++ TQF M IE GL+K DFLGLKTLTL++ + D + +RG K + Sbjct: 529 YVPLYKDSKTGKVATQFTMDLIENCGLVKMDFLGLKTLTLIKHTEDLIHKRGGEWRKFSI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I + D ET+ +L+ +FQ ES GM+ L+ +P +ED+IAL +LYRPGP+D I Sbjct: 589 GDIDYSDAETFKMLSEGKAAAVFQFESQGMQNILKRAKPSKMEDLIALNALYRPGPMDYI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + K KI P ++ +L ET GVI+YQEQVMQ+AQ ++GYSL +AD+LRRAMG Sbjct: 649 NQFIESKFDNSKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGYSLGQADILRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK E M +KE+FI GA + G S+ A IFE+L FA YGFNKSHAAAY+V+++QTA+ Sbjct: 709 KKKIEVMKTEKEKFIKGAQEKGFSREDADRIFEILIPFAGYGFNKSHAAAYSVLAFQTAY 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837 +K H+P EF+AA++T E+ + +K+ ++ +A + ++I+PP VN F V D I + Sbjct: 769 LKAHFPAEFMAANLTNEITSTDKLPEYIAEAEKMGLKILPPHVNLSDPYFSVSSDGNIIF 828 Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L IKGVG A ++E + + S DF R D N+R LE ++ G D G Sbjct: 829 GLLGIKGVGMQAAHELVEEREKNGRYKSFIDFLERNDLHTQNKRNLEVMIKTGCFDGLGQ 888 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFENE 955 R L+ ++D YA ++N + ++F FSD EK + E Sbjct: 889 ERSTLMVNMDGAVAYASQKKENESTGQGSLFEGSGIKEFSD-FVFEKIEEFPKKEKLRLE 947 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + ++GFY SGHPLD Y+ ++ L M+ +Q +T+KG+ + Sbjct: 948 KELMGFYISGHPLDEYRKVIDNSATLDISHLARATSKKRYVLVGMLTGVRQHQTKKGAMM 1007 Query: 1016 GWVTFSEPAKEYEANFFP 1033 G+ TF + + FFP Sbjct: 1008 GFGTFEDLNGTLDLVFFP 1025 >gi|238020460|ref|ZP_04600886.1| hypothetical protein GCWU000324_00342 [Kingella oralis ATCC 51147] gi|237867440|gb|EEP68446.1| hypothetical protein GCWU000324_00342 [Kingella oralis ATCC 51147] Length = 1156 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/1027 (39%), Positives = 588/1027 (57%), Gaps = 32/1027 (3%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L+ HS +S+ + + +++ + A+ PA+A+TD N F L+F + AGI+PI Sbjct: 4 IPLRAHSEFSITDSIIRISDYVAAARAENYPALALTDLMNTFGLLKFYKACRKAGIKPIC 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSVR 130 G + I+ + + ++ VLL+ +GY RL EL++ + D + K + + Sbjct: 64 GADVRIENPEQPEKPHRA----------VLLIRNEQGYIRLNELLTAAFEADDRNKHTPQ 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I +WL + GL+ L+G G + + A + F + Y+ LQR Sbjct: 114 INQAWLAQGDNSGLLCLSGAQMGEVGSHLMLGNEDKAHAAAQKYAAWFPNAFYLELQRLP 173 Query: 191 GYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 + S +++A +LP+VAT+ + FL EDY+AHD + +A + RP Sbjct: 174 EKPDWEISVSGSLKIAQALQLPVVATHPTQFLQREDYKAHDARVCIAGGWTLIDPKRPHD 233 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 TP + E + F+D+PEAL N+ EIA+RC+ L + LP F + D+ Sbjct: 234 FTPGQHFLTPDEFAARFADIPEALANSQEIAKRCNLTLTLGKNFLPLFPTPDGMDLN--- 290 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR+ A GL+ RLA + AQ +Y+ RLDFEL++I +M+F GYFLIV DFI Sbjct: 291 -DYLRHLANEGLQERLAVLYPNEAERAQRQPEYQARLDFELDIIIKMQFPGYFLIVQDFI 349 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK N PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 350 NWAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDIDFCQ 409 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 R VI YV+ KYG + V+QI+TFG++ +KA +RDVGR LQ+P++ DRL KLIP + Sbjct: 410 ANRGRVIEYVREKYGKQAVSQIVTFGAMSSKAVIRDVGRVLQLPFALCDRLSKLIPLEAN 469 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 P+ L+ E + + D LL ++ KLE L R+ HA G++I +S Sbjct: 470 KPLHLKDALAAEPEIEQIIREEEADELLNLAMKLEDLTRNLGMHAGGVLIAPSKISDFCG 529 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 +Y+ + PV+ F+ +E+ GL+KFDFLGL+ LT+++ + +F+ Q G VD+S IP Sbjct: 530 VYQADENASPVSMFDKGDVEEIGLVKFDFLGLRNLTIIEMAQNFIRQTTGEHVDVSHIPL 589 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD Y + T +FQ ESSGM++ L +E+IIA VSLYRPGP+D I + Sbjct: 590 DDQVAYKIFRDANTTAVFQFESSGMKKMLAQANTTNLEEIIAFVSLYRPGPMDLIPDFIE 649 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R G K +HPL++P+L+ T G+++YQEQVMQ AQ++ GYSL AD+LRRAMGKK E Sbjct: 650 RMKGA-KFEYMHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPE 708 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM K +E F GA+K GIS+ A IF+ + KFA YGFNKSHAAAYA +SYQTAW+K HY Sbjct: 709 EMVKHREIFAEGAAKQGISREKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQTAWLKAHY 768 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDAR-QFN-IQIMPPSVNTPCVDF-KVGDNRIYYSLA 840 P EF+AA+M+ E+DN +++K F DA+ + N I+ +PP VN F +I Y+L Sbjct: 769 PAEFMAATMSSELDNTDQLKVFFDDAQSKLNGIRFLPPDVNESFYRFIPNAQKQIRYALG 828 Query: 841 AIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIKG G I+ A + F L DFC RV + NRRVLE+L+ GA D +R Sbjct: 829 AIKGTGEAAVNAIVAARESGGKFTDLFDFCERVGKQHANRRVLEALIRGGAFDSIEPNRA 888 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 LL ++D AQ +K +F + +D + L+ N + + E++ + Sbjct: 889 MLLGNID--LAIAQAEQKADNANQGGLFDMVEDALAD-VPLQYIEPWNEATKLAEEKQAI 945 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFY SGHP Y +R A + RLA S + T+ G I + Sbjct: 946 GFYLSGHPFAPYASEVRAFAPTPLGSLKA--KDGTQRLAGFATSIRSIMTKNGKMIAVLL 1003 Query: 1020 FSEPAKE 1026 + AK+ Sbjct: 1004 EDDTAKQ 1010 >gi|289675281|ref|ZP_06496171.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae FF5] Length = 1081 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/968 (40%), Positives = 569/968 (58%), Gaps = 59/968 (6%) Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 Y+ L EL+SR ++ Q + I W+ + +EG+I L+ G I A + A+ Sbjct: 1 YRNLTELISRGFIEGQRNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEAD 59 Query: 169 KRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 + L + ++F DR Y+ +QR +R D V LA H PLVATN+ F+ + D+EA Sbjct: 60 ELLREWLEVFPDRFYIEVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEA 119 Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 H+ + + + R D YLK+ EM +FSDLPEALENTVEIA+RC+ ++ Sbjct: 120 HETRVCIGEGRALDDPRRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVK 179 Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRL 341 + LP F + I + R + GLE RLA + Y A Q Y RL Sbjct: 180 LGTHFLPNFPIPDGMTI----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRL 235 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 +FEL++I +M F GYFLIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + Sbjct: 236 NFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYD 295 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPDFD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV Sbjct: 296 LLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDV 355 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 R Y DRL K+IP + + +A + R+ D + E++ KLEG+ Sbjct: 356 ARVQGKSYGLADRLSKMIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGI 414 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R+ HA G+VI L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT+ Sbjct: 415 VRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTI 474 Query: 582 LQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 + +L + + KV D++ IP DD TY LL T +FQLES GM++ ++ ++ Sbjct: 475 IDWALKTINRDRAKVNEEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLK 534 Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID-------PMLKETQG 687 PDC+ED+IALV+L+RPGP+ + +V + NRK+G+ ++ +P +D P+L T G Sbjct: 535 PDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYG 592 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVMQIAQ+++GY+L AD+LRRAMGKK EEM KQ+ FI G N I +A Sbjct: 593 IILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAG 652 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 NIF+L+ KFA YGFNKSH+AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ + Sbjct: 653 NIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIE 712 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866 + R +++ P VNT F V D+ RI Y L AIKGVG I +A D PF L Sbjct: 713 EVRTMKLRLDAPDVNTSEFKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLF 772 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFG---------------YSRMQLLQSLDNIQKY 911 DFC+RVD K++N+R L+ L+ +GALD G +R LL +L+ + Sbjct: 773 DFCARVDLKRVNKRTLDGLIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQA 832 Query: 912 AQWVEKNRTNKHENIFAH-----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 A+ ++ + H ++F + +++ + S+++ R E+ LG Y +GH Sbjct: 833 AEQTARSHDSGHADLFGGLFVEADADVYANHRKTRELSLKD---RLRGEKETLGLYLTGH 889 Query: 967 PLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 P+D Y+ +R+ + + ++ + +A ++++ + K +KG ++G++T + + Sbjct: 890 PIDEYEGEIRRFA----RQRIIDLKPARDTQTVAGLIIALRVMKNKKGDKMGFITLDDRS 945 Query: 1025 KEYEANFF 1032 EA+ F Sbjct: 946 ARIEASLF 953 >gi|218767589|ref|YP_002342101.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis Z2491] gi|14194676|sp|Q9JVX8|DPO3A_NEIMA RecName: Full=DNA polymerase III subunit alpha gi|121051597|emb|CAM07897.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis Z2491] Length = 1144 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1046 (38%), Positives = 597/1046 (57%), Gaps = 64/1046 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + +AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I D PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVRIGNPD------APDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M FSDLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGTIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D +I Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PDMKIRYALGAIKGTGEAAVESITSARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002 + + S + E+ V+GFY SGHP Y +R++ + ++ ++ +++RLA V Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++G +I +V+ + + + E Sbjct: 987 AVRTMMGKRG-KIAFVSLEDLSGQVE 1011 >gi|325127575|gb|EGC50498.1| DNA polymerase III, alpha subunit [Neisseria meningitidis N1568] Length = 1144 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1040 (38%), Positives = 597/1040 (57%), Gaps = 52/1040 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F++ +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR TPD + M+ F+DLPEALENTVEIA+RC+ + + LP F D + Sbjct: 234 PRDFTPDQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLF--PTPDGLS 291 Query: 305 KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +++ +L NK + V+L + +Y++RLDFELN+I +MKF GYFLIV DF Sbjct: 292 RDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDF 351 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFC Sbjct: 352 INWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFC 411 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L KLIP + Sbjct: 412 QANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEA 471 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P+SL A+ + + +E A+ D L+ +++KLE L R HA G++I +S Sbjct: 472 NKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDY 530 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------V 596 P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K + Sbjct: 531 SPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTTGDII 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+D Sbjct: 586 DVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRRA Sbjct: 646 NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQT Sbjct: 705 MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835 AW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D +I Sbjct: 765 AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ GA D Sbjct: 825 RYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENS 948 +R LL ++D N K N A++ G F + + L + + Sbjct: 885 EPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVRLVDAPMWSE 935 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 S + E+ V+GFY SGHP Y +R++ + +++RLA V + + Sbjct: 936 SEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMM 992 Query: 1009 TRKGSRIGWVTFSEPAKEYE 1028 ++G +I +V+ + + + E Sbjct: 993 GKRG-KIAFVSLEDLSGQVE 1011 >gi|320107146|ref|YP_004182736.1| DNA polymerase III subunit alpha [Terriglobus saanensis SP1PR4] gi|319925667|gb|ADV82742.1| DNA polymerase III, alpha subunit [Terriglobus saanensis SP1PR4] Length = 1173 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/997 (39%), Positives = 592/997 (59%), Gaps = 41/997 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + F HL +H+ YSLL+GA ++ + + Q A A+TD N++ A+ F G+ Sbjct: 2 AAEFTHLHLHTDYSLLDGACDVDKLAAHLKKTGQTAAAMTDHGNIYGAVHFFDAMEKKGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+GC+L + + + G F ++L EGY+ L+ L S L + + Sbjct: 62 KPILGCELYLSKTADHREMADGYNHF------LVLAENEEGYKNLVRLTSEASL-NGFYR 114 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ +L + TEGLI +G +G +++ + + A+K F ++FG + ++ + Sbjct: 115 KPRVSKEFLSK-HTEGLIGFSGCLAGEVNQHLMGDRYEEAKKSAGMFSEMFGKNNFFLEI 173 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H D+ + ++ +PL+ATN+S ++ +D AH++L+ V + ++ +R Sbjct: 174 QDHGLEPDKKVCDALFKMEKELGIPLIATNDSHYVEADDSRAHEILLCVQTAGSMNDPNR 233 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T + Y+K EM F+ PE T++ RC+ +Q P F E ++ Sbjct: 234 FRFDTQEFYIKTAEEMHRTFAHAPEVCTRTMQFIDRCNLKMQKVKDPFPAFPVPEGMTLE 293 Query: 305 KEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E R LE +A +G + K +Y +RL+ EL I +MKF GYF+IV Sbjct: 294 SYFEEICRKGLKKRLETSVAHLRERGLLRKTI--SEYEERLNTELACIKQMKFPGYFMIV 351 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A++ NIPVGPGRGS AGS+ AY + ITDIDPL+ LLFERFLNP+R+SMPD DI Sbjct: 352 WDFIRYAREQNIPVGPGRGSAAGSLVAYVMEITDIDPLQHELLFERFLNPERVSMPDIDI 411 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC +RR+EVI YV+ KYG+++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ K+IP Sbjct: 412 DFCMNRREEVIEYVKRKYGNDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKMIP 471 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + QA+ D + +A +DP + L++ +Q+LEGL R A HAAG+VI +PL+ Sbjct: 472 ATIGISIE-QAMKDSTALGQAYDSDPRIKELIDAAQRLEGLVRGAGVHAAGVVIAPQPLT 530 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS 599 +LVP+ R + + VT ++MK I+K GL+K DFLGL TLT++ L + RGV+VD++ Sbjct: 531 ELVPVTR-AKGEGIVTAYDMKAIDKMGLLKMDFLGLTTLTVIDDCLKLIKLNRGVEVDMA 589 Query: 600 LIPFDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD T+ + + T G+FQ ES GMR L +P IED+ AL +LYRPGPI Sbjct: 590 TIPLDDAVTFEKVFHRALTSGVFQFESGGMRDVLRRYKPTSIEDLTALNALYRPGPIQGG 649 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 ++ + RK G+ + I P ++ +L+ET GVI+YQEQVMQI+ +++GYSL AD+LRRA Sbjct: 650 MIDDFIERKWGRRAVEYILPDLEGLLRETLGVIVYQEQVMQISSVIAGYSLGGADLLRRA 709 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM KQ++ F+SGA+ K A +F+L+ +FA YGFNKSH+AAYA+++Y T Sbjct: 710 MGKKNAEEMAKQRDLFMSGAAAKKHPKDKAGQLFDLMEQFAGYGFNKSHSAAYALLAYHT 769 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++KTHYPVEF+AA +T E E + K+ + R+ I + PP V +F + I Sbjct: 770 AYLKTHYPVEFMAALLTSETSKPENVVKYISECRELGITVQPPDVQISDANFTPAGDVIR 829 Query: 837 YSLAAIKGVGTTT------ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + L AIK VG AR ++A F SL DFC +V+ K LN+RV ESL+ AGA Sbjct: 830 FGLTAIKNVGGNAIECIIKARRELQAEGKTGFTSLWDFCEKVELKLLNKRVFESLIKAGA 889 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-------LEKF 943 +D FG R ++ ++D + AQ +++ +F G F T L + Sbjct: 890 MDSFG-PRARVFVAVDGAMERAQKSQRDAAAGQHGLF----GIFDSGPTDVSPQDDLPQV 944 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 + + R +NE+ VLGF+ SGHP+D Y+ LR M + Sbjct: 945 AEWDEHTRLQNEKEVLGFFVSGHPMDKYREKLRNMKV 981 >gi|288574785|ref|ZP_06393142.1| DNA polymerase III, alpha subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570526|gb|EFC92083.1| DNA polymerase III, alpha subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1145 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1049 (38%), Positives = 631/1049 (60%), Gaps = 51/1049 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K +FVHL VH+ YSLL+GA+ + + PA+AI+D ++ +EF Q Sbjct: 1 MTKEKNFVHLHVHTEYSLLDGAIRCKELARRAKEWGMPAVAISDHGVMYGVIEFYQACKD 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + + + + P + ++LL GY L++LVS + D Sbjct: 61 EGIKPIIGCEIYVAPEG----IEEKRKENP-INHLLLLAENDVGYHNLVKLVS-IANTDG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L +EG+I + +G I + + A R ++ +FG D + Sbjct: 115 FYYKPRVDHDLLSRY-SEGIIACSACLAGEIPQLLIAGEDEKALDRANLYRDIFGEDNFF 173 Query: 184 VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVS 241 + +Q H + +++++ H PLVAT +S ++++EDY+ H++L+ V +ST+ Sbjct: 174 LEIQYNHIPHQAVVNKGLIEMSRKHGFPLVATTDSHYMNKEDYDWHEILLCVGTNSTLDD 233 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRC--SFILQVHAPILPRFIEK 298 K T D YL++ EM IF D +PEALENT++IA RC SF L LP+F Sbjct: 234 PKRMSFETNDFYLRSAEEMWQIFGDDVPEALENTLKIAERCDVSFDLGTREYKLPQF--- 290 Query: 299 ECDDIQKEE--ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 DI + E E+ L A GL+ RL + +YR+RL++EL+VI +M F GY Sbjct: 291 ---DIPEGETLESFLEKSAFDGLKERLKGAPLT-----DEYRRRLEYELSVINQMGFPGY 342 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLI+AD IQ K+ IP+GPGRGS AGS+ AYA+ IT++DP+++ L+FERFLNP+R++MP Sbjct: 343 FLIIADVIQACKERGIPIGPGRGSAAGSLVAYAMKITELDPIKYGLIFERFLNPERVTMP 402 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D D R+++++YV KYG E V+QIITFG ++ KAA++DVGRA+ +PY++VDR+ Sbjct: 403 DIDTDVSDKGREDLLKYVVEKYGVENVSQIITFGRMKTKAAIKDVGRAMGIPYAEVDRVA 462 Query: 477 KLIPNDPAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 KL+P+ +++IAD +E R DP + LLE + K+EGL RH S HAAG+ Sbjct: 463 KLVPD------GVKSIADAISLTPDLKEIRDKDPKMRTLLESAAKIEGLARHCSQHAAGV 516 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI PL+ LVP+ R + + VTQF+M+ +E+ GL+K DFLGL+TL++L+++L+ + Sbjct: 517 VITPMPLTDLVPV-RKIGENQVVTQFSMEPVERLGLVKMDFLGLQTLSILEEALENIKTN 575 Query: 593 GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G + +L+ +P DD T+ +L TLG+FQLES+GMR+ L+ M PD ED+IA+++LYR Sbjct: 576 GKEPPNLNELPMDDQSTFKMLQAGDTLGVFQLESAGMRRLLKKMLPDSFEDVIAVLALYR 635 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+++ ++ Y K+G+ K +HP+++ +LKET GVI+YQEQVM+ A L+GY+L Sbjct: 636 PGPLESGMLDQYVECKHGRAKAHYLHPMLEDVLKETHGVILYQEQVMKCASTLAGYTLGG 695 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK E M++Q+ F+SGA K G+ K A IF+++ KFA YGFNKSH+AAY Sbjct: 696 ADLLRRAMGKKKVEVMNEQRAIFLSGAEKQGVDKAKADEIFDIIQKFAGYGFNKSHSAAY 755 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDF 828 A+ISYQTA++K HY EF+AA +T ++ + + + + ++ R+ I ++PP VN F Sbjct: 756 ALISYQTAYLKAHYDREFMAAYLTSQIGSKKDVMAAYVREVRKSGIPVLPPDVNQSRSAF 815 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887 +N I + L A+ VG+ I++A + PF L DF RVD + LN+ V+E+L+ Sbjct: 816 TAAENVIRFGLEAVGKVGSGAVEAIIKAREEGGPFKDLWDFLDRVDVRCLNKGVMENLIK 875 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 AGA D +R QL++S + YA +++ ++F E D + +E + ++ Sbjct: 876 AGAFDSISPNRRQLMESFPAMMDYA--LKRGCDGDQCSLFGEQEAAVHPDMVEVEDYDIQ 933 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR--LAAMVVSK 1004 + E E+ +G Y SGHP + Y+ + + + R + A M+V Sbjct: 934 E---KLEMEKSAIGMYISGHPFERYEEKASRY-VNCTISDLELWRSEKVSPCFAGMLVES 989 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K T++G +G + F + + E EA FP Sbjct: 990 VEKYTKRGEPMGILRFEDCSGEIEAVCFP 1018 >gi|118602780|ref|YP_903995.1| DNA polymerase III, alpha subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567719|gb|ABL02524.1| DNA polymerase III, alpha subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 1144 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1051 (38%), Positives = 622/1051 (59%), Gaps = 60/1051 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + +FVHL S +S+ + + +++K+ +IA+TD +NLF+A++F QKA A I Sbjct: 3 NSNFVHLHCQSEFSVENSLIRIPKLIEKVQEIGMNSIALTDESNLFTAVKFYQKATIANI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G +++I ++ S++LL +GY L EL+S Y QG+ Sbjct: 63 KPIFGARINIKDKEG------------EFYSVLLLCQDYQGYLNLSELISLSYT--QGRS 108 Query: 128 SVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + ++ Q I +GLIM+ + + N A+++ ++ + +R Y+++ Sbjct: 109 FECVSVTQQQLIDHNQGLIMIATPIYSDVAKYLISNQMIEAKQKAEFWQTILVERYYLSV 168 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR R +D V+LA ++ +VATN+ FL+E D++AH+ + ++ ++ R Sbjct: 169 QRTSREFDEEHLHLCVKLALELDIAVVATNDVQFLNESDFDAHEARICISQGGLLDDVRR 228 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP-ILPRFIEKECDDI 303 + + +LK+ +M +FSDLPE LENT+EIA+RC+ ++ LP F + I Sbjct: 229 EKHFSNQQFLKSSEQMHELFSDLPEILENTLEIAKRCNVHFKLFKKNYLPDFPVPKDLTI 288 Query: 304 QK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ EE+E GL RL + Y QRL FELNVI +M F GYFLIVA Sbjct: 289 ERFFCEESE------HGLVQRLQNLKV----DTLVYYQRLKFELNVIIQMGFPGYFLIVA 338 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+W+K+N+IPVGPGRGSGAGS+ AY L IT++DP+R LLFERFLNP+R+SMPDFDID Sbjct: 339 DFIRWSKENDIPVGPGRGSGAGSLVAYVLGITNVDPIRHELLFERFLNPERVSMPDFDID 398 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRRDEVI YV KYG+++V+QIIT+G++ AK +RDVGR L PY D++ K+IPN Sbjct: 399 FCTDRRDEVIDYVAKKYGYKKVSQIITYGTMAAKGVVRDVGRILGHPYGFSDKISKMIPN 458 Query: 482 DPA----HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 D +S R ++ SV L+++S++LEGL R+ THA G+VI Sbjct: 459 DLKMTLEKALSKPEEGGSEELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAPS 518 Query: 538 PLSQLVPMYRDV-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 +S P+Y+ +D V+QF+ IE GL+KFDFLGL LT++ K++ ++ +G+ Sbjct: 519 KISDFCPVYKGYGENDGVVSQFDKDDIEAIGLVKFDFLGLSNLTVIHKTVKLISAKGLSN 578 Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +DL +P DD + Y LL T GIFQLES GMR L+ +Q D EDI+A+++LYRPG Sbjct: 579 EPIDLDALPLDDKKVYELLQRCDTTGIFQLESEGMRSYLKKLQADNFEDIVAMLALYRPG 638 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+D +V Y N K+G + + HP+++ +LK T GV +YQEQVM+ AQ+++GYSL AD Sbjct: 639 PLDAGMVDDYINVKHGAQ-VKYPHPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGAD 697 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM +Q+ F+ GA++ GI + A IF+L+ KF+ YGFNKSH+ AYA Sbjct: 698 LLRRAMGKKKDSEMSRQRSVFVKGAAEKGIDEKKANEIFDLIDKFSGYGFNKSHSVAYAY 757 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SY TAW+K+H+P F+AA ++ MDN ++I + R+ + + P+V +F + Sbjct: 758 VSYHTAWLKSHHPAPFMAAVLSGMMDNTDRISFTISEVRKMGLVVNGPNVCESNYEFSIN 817 Query: 832 DNR-IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D + + Y L AIKGVG + E + + + SL +FCSR++ + LN+R +E+L+++G Sbjct: 818 DEKTVAYGLGAIKGVGGALVDALVFERNTNGVYKSLFEFCSRIEKRYLNKRAIEALIYSG 877 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D G R L+++ + A+ K + F+ +KG FS+ ++ + S Sbjct: 878 AFDVLGVDRASLIKTYPIAIRQAE-------QKQNDYFSGQKGLFSNIEQHNEYEMNYLS 930 Query: 950 V-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMV 1001 R + E+ VLG+YF+ HP D YK L+ +G S R N ++R+ A++ Sbjct: 931 ASSFSFKERLQLEKSVLGYYFNDHPTDEYKTDLKHIG--AILPSKIVFRNNKDMRILALI 988 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T+ G +I +T + AK A F Sbjct: 989 SELRYRATKSGGQIALITVEDGAKLLNAVIF 1019 >gi|330998876|ref|ZP_08322603.1| DNA polymerase III subunit alpha [Parasutterella excrementihominis YIT 11859] gi|329576090|gb|EGG57609.1| DNA polymerase III subunit alpha [Parasutterella excrementihominis YIT 11859] Length = 1148 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1029 (37%), Positives = 606/1029 (58%), Gaps = 62/1029 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+ +G L+ ++ K A A+AITD +F + F + A AAGI+PI Sbjct: 5 FVHLRMHTEFSIKDGMLNPKKVVHKAIASGMKALAITDATAMFGDVIFYKAASAAGIKPI 64 Query: 71 IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +G I + D L++ + L +GY L +L+SR +L +Q K Sbjct: 65 LGADCSITNHYNRDDYLRL--------------LFLARNHQGYLTLCDLLSRAWLTNQYK 110 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + L W+ +GLI+L+G ++G I +A SS AE+ + F ++ L Sbjct: 111 DRGEVDLDWITPEMADGLIVLSGFNTGAIGKAILNGSSSAAEQEARRLSQKF-PHFFMEL 169 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR R D ++ V+LA LP+VAT F + ED+E H+ +A+A ++ K R Sbjct: 170 QRVGRPNDEMLIAESVKLAKKLGLPVVATQPIQFENPEDFEFHEARVAIADGFTLANKAR 229 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR+ TP Y + + EM +F D+P A+EN+VEIA+RC+ +++ P LP F + ++ Sbjct: 230 PRIYTPQQYFRTKEEMCELFKDIPSAIENSVEIAKRCNVTIKLGKPQLPIFPTPDGMSLK 289 Query: 305 KEEENELRNKAVAGLEVRLA---------QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + A GL+ RL + A + Y++RL+ E+ +I M F G Sbjct: 290 ----DYMAQLAREGLDRRLKVLYPDEKKREAAFPR------YKERLEREIKIIQDMDFPG 339 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SM Sbjct: 340 YFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLGITDLDPLAYDLLFERFLNPERVSM 399 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFD+DFCQ+ R VI YV++KYG E V+QI TFG++ AK ++DVGR L M YS+ DRL Sbjct: 400 PDFDVDFCQNNRGRVIEYVKSKYGEESVSQIATFGTMGAKGVIKDVGRVLDMSYSEADRL 459 Query: 476 CKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 ++IP P H +L+ A++++ +FR +P +L+E + KLEG R HA G++I Sbjct: 460 SRMIPTRPGHNTTLEEALSEEPQFRAEVRNNPQARKLIEYALKLEGTTRSLGIHAGGVLI 519 Query: 535 GDRPLSQLVPMYRDVRSDLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 L P+Y LP ++ ++ K +E GL+KFDFLGL TLT+++++LD++ + Sbjct: 520 APGKLIDFCPLY--AAGMLPENVISMYDKKDVEAVGLVKFDFLGLTTLTIIERALDYIEK 577 Query: 592 R-GVKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 GV+ D+ + DD +TY + T T+ +FQ ES GM + L +P + D+IAL +L Sbjct: 578 NIGVRPDIEHMECDDEDTYKKIFQTGDTVAVFQFESPGMHKLLIDAKPTQLSDLIALNAL 637 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGP+D I + + + G++K P + P+L++T G+++YQEQVM +AQ + GYSL Sbjct: 638 YRPGPMDLIPDFLDIRAGRKKAEYADPRLIPILEDTAGIMVYQEQVMLVAQKIGGYSLGG 697 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EM++Q + FI GA+KNG+S+ +A ++FEL+ KFA YGFNKSHAAAY Sbjct: 698 ADILRRAMGKKDVAEMERQSKVFIEGAAKNGVSEEVAAHLFELMRKFAGYGFNKSHAAAY 757 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 + ++Y+T W+K +YP EFLA+S++ M + EK K DA++ +++++ P +N ++ Sbjct: 758 SYVAYKTGWLKNYYPAEFLASSLSEVMTDPEKSLKILMDAKRHSVKLLGPDINESEFNYT 817 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 I L A+KGVG+ A I E + PF D RV S+ + +++++ Sbjct: 818 SPKTMEIRMGLGALKGVGSAPAEAIKAEREQNGPFKDPFDLVKRVGSQLITKKIIQVFAM 877 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AG D +R + ++ D + + AQ E + ++F E S+++ +++ + + Sbjct: 878 AGVFDSIEPNRRKWFENADVVVQSAQ--ENEKAADQFSLFGEEP---SNEVPIKEVAPWS 932 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSK 1004 R E EQ VLGFYFSGHPL+ Y+ L+ + + VA N +A M + Sbjct: 933 DRTRMEKEQYVLGFYFSGHPLEAYQSELK----RNFGALVAGTESENPGEYLVAGMYLGC 988 Query: 1005 QQKKTRKGS 1013 +Q++ + GS Sbjct: 989 EQRRGKDGS 997 >gi|315636761|ref|ZP_07891990.1| DNA-directed DNA polymerase III alpha subunit [Arcobacter butzleri JV22] gi|315478978|gb|EFU69682.1| DNA-directed DNA polymerase III alpha subunit [Arcobacter butzleri JV22] Length = 1187 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1052 (38%), Positives = 611/1052 (58%), Gaps = 56/1052 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL +H+ YSLL+GA + + K+ ++A+TD N+F A+ F GI+ Sbjct: 5 PQFTHLHLHTEYSLLDGANKIKPLAKKLKKLGMTSVAMTDHGNMFGAIAFYNAMRDEGIK 64 Query: 69 PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIG + I + +D TN+ + + L GY+ L+ L S+ Y+ + Sbjct: 65 PIIGMEAYIHNSEDISDKTNRQRY------HLCLYAKNEIGYKNLMYLSSQAYI-NGFYY 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKL 177 RI L+E +EGL+ G I +R F + + A+K L +K++ Sbjct: 118 YPRINKKILKE-NSEGLVCSAACLQGEINWHLNTQSERNVKFGAKGYEEAKKIALEYKEI 176 Query: 178 FGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 FGD Y+ + RH D+ + + Q+++L+ + +VATN++ +L ++D +AH+ M +A Sbjct: 177 FGDDFYLEIMRHGISDQLFVDDQILKLSKETGIKVVATNDTHYLEQKDADAHEAFMCIAM 236 Query: 237 STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + + +R R + + YLK+ ++ ++SD+PEA+E T EIA +C+ +++ P P F Sbjct: 237 NKLYDDPNRLRHSVHEFYLKSPEQIAKLYSDIPEAIEATQEIADKCNLTIKLGNPTPPNF 296 Query: 296 I-----EKECDDIQKEEENE--LRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRL 341 +E I E E E L N + GLE RL I H Q+YR RL Sbjct: 297 KFTRQKSQEAGLILPEPELEYSLENDKILFIHECRIGLEDRLK---IVPTEHHQEYRDRL 353 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ +I MKF GY LIV DF+ AK+ IPVGPGRGS AGS+ A++L ITDIDP+ + Sbjct: 354 EVEIEIINNMKFPGYMLIVWDFVIVAKRMGIPVGPGRGSAAGSLVAFSLKITDIDPIPYG 413 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D+DFCQ RR E+I YV +YG VAQIITFG L AK +RDV Sbjct: 414 LLFERFLNPERVSMPDIDMDFCQSRRGEIIDYVVQQYGRANVAQIITFGKLLAKGVIRDV 473 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 R L MPYS+ D + KLIP++ + + + + +E ADP R+ E + LEGL Sbjct: 474 ARVLDMPYSKADAMAKLIPDELGIDLK-NSWEKEPKIKELCEADPQAARVWEYALALEGL 532 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R+A THAAG+VI + PL + P+++ D TQ+N K+IE LIKFDFLGLKTLT+ Sbjct: 533 NRNAGTHAAGVVISNEPLWKKTPLFKPSGLDTLATQYNGKYIEDVDLIKFDFLGLKTLTV 592 Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 ++++ + QR G +V+ +D Y L+ T T+G+FQ+ES GM+ + ++P Sbjct: 593 IEEANKLIEQRHGKRVNFITTDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKPSNF 652 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQEQ 694 EDIIA+++LYRPGP+++ ++ + RK+G+ KI H ++ P+L+ T GVI+YQEQ Sbjct: 653 EDIIAVLALYRPGPMESGMLDDFIERKHGRAKIDYFHDELESALKPILENTYGVIVYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VMQI Q + G+SL AD++RRAMGKKIKEEMD+ K F GA G ++ A +F+L+ Sbjct: 713 VMQIVQSVGGFSLGGADLVRRAMGKKIKEEMDRLKGEFADGAQNKGYTRAYAEELFDLIV 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+ + ++ + Sbjct: 773 KFAGYGFNKSHSAAYALVTFYTSYLKCYYPAEFMAALLTLEKDNTDKVVKYVDETKRLGL 832 Query: 815 QIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870 ++ PP +N + F G + + + AIKG G I+ A + PF L DF S Sbjct: 833 ELFPPDINKSDLVFSAKKIDGKEVVMFGMGAIKGAGDVAINAILNARGNAPFKDLPDFIS 892 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH---ENIF 927 R+D K+N+RV+ESL AGA D FGY+R L L+ I+K V K T K ++F Sbjct: 893 RIDGSKVNKRVIESLTKAGAFDSFGYTRKSL---LNQIEKIVDTVGKAATAKKMMTGSLF 949 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + I LE + + E E+ LGFY SGHPLD YK L K+ + Sbjct: 950 GDSEELTKIDIELEHLNEFDPKELLEFEKATLGFYVSGHPLDEYKKDLEKINFTLSSQID 1009 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G+ + S +K ++KG++ G V+ Sbjct: 1010 ELEDGSQALFVGKIESITEKTSKKGNKFGIVS 1041 >gi|261381235|ref|ZP_05985808.1| DNA polymerase III, alpha subunit [Neisseria subflava NJ9703] gi|284795857|gb|EFC51204.1| DNA polymerase III, alpha subunit [Neisseria subflava NJ9703] Length = 1144 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/1044 (39%), Positives = 597/1044 (57%), Gaps = 72/1044 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+++G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSIIDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLVKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+SL+ A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLSLEKAMEAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N +I Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVQLIDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPL-----DVYKPILRKMGIKGYEESVATIRGNNIRLA 998 S+ + S + E+ V+GFY SGHP +V++ K+G ++SV RLA Sbjct: 931 SMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVHQIAPTKLGRLKPQDSV--------RLA 982 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSE 1022 V + + ++G +I +V+ + Sbjct: 983 GFVTAVRTMMGKRG-KIAFVSLED 1005 >gi|318041279|ref|ZP_07973235.1| DNA polymerase III subunit alpha [Synechococcus sp. CB0101] Length = 1178 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1066 (38%), Positives = 606/1066 (56%), Gaps = 61/1066 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++ + PA+A+TD ++ A+E + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPAMVKRAEELGMPALALTDHGVMYGAIELLKLCKGTAVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRMYLLD 123 IIG ++ + G P P +V+L A GY+ L++L S +L Sbjct: 62 IIGNEMYV---------INGSIDDPNPPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRG 112 Query: 124 QGKQSV--RICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + + R C+ E +EGLI+ T G + +A VA ++ +FGD Sbjct: 113 MRGRGIFSRACIDKPTLEQYSEGLIVATACLGGELSQAILRGRPDVARDVARWYQGVFGD 172 Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ +Q H DR ++V+++ +PL+ATN++ +L+ D EAHD L+ + + Sbjct: 173 DFYLEIQDHGSPEDRIVNVELVRISQELGIPLIATNDAHYLTSNDAEAHDALLCILTGKL 232 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILP 293 V+ + R R T Y+K EM+++F+D + EA+ NT +A + + +P Sbjct: 233 VTDEKRLRYTGTEYIKGEQEMLALFADHLEPEVVAEAVANTARVAEKVEDYDILGRYQMP 292 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 RF E + LR + GL RL +Y +RL FEL V+ +M F Sbjct: 293 RFPIPEG----HTPVSYLREVSEQGLRARLQ--LPENEVFTPEYGERLTFELQVMEQMGF 346 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFL+V D+I++A++N IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R Sbjct: 347 PTYFLVVWDYIRFARENGIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERK 406 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC +RR EVI YV +YG E+VAQIITF + +KA L+DV R L +PY D Sbjct: 407 SMPDIDTDFCIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDAD 466 Query: 474 RLCKLIPNDPAHPVSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 RL KLIP P L + I D+S FRE DP V R ++++ ++EG + HA Sbjct: 467 RLAKLIPVVRGKPAKLKEMIGDESPAPEFREKYQNDPQVKRWVDMAMRIEGTNKTFGVHA 526 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI PL ++VP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K++D + Sbjct: 527 AGVVIAADPLDEVVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTIDLV 585 Query: 590 AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q G KVD +P DD TY LL GIFQLESSGMRQ + ++P +EDI ++++ Sbjct: 586 EQSTGQKVDPDALPLDDPGTYGLLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILA 645 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+D ++ + NRK+G+E I H ++P+L+ET G+++YQEQ+M+IAQ L+GYS Sbjct: 646 LYRPGPLDAGLIPKFINRKHGREAIDFAHAKLEPILQETYGIMVYQEQIMRIAQDLAGYS 705 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L EAD+LRRAMGKK K EM+K + F+ GA++ G+ IA +FE + FA+Y FNKSH+ Sbjct: 706 LGEADLLRRAMGKKKKSEMEKHQSIFVKGATERGVDSKIAEALFEQMVLFAEYCFNKSHS 765 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AY ++YQTA++K HYPV ++AA +T+ +K++++ + I++MPP VN + Sbjct: 766 TAYGAVTYQTAYLKAHYPVAYMAALLTVNAGTTDKVQRYISNCNAMGIEVMPPDVNASGI 825 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 DF +RI + L+A++ +G R ++EA SAD PF SL D C R+ LNRR LESL Sbjct: 826 DFTPVGDRILFGLSAVRNLGDGAIRALLEARSADGPFRSLADLCDRIPGTTLNRRSLESL 885 Query: 886 VFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 + GALD +R QL+ LD I +A ++R + N+F G +D + Sbjct: 886 IHCGALDALEPQANRAQLMADLDLIVDWASSRARDRASGQGNLFDLMGGGSADAVADAAG 945 Query: 944 SVENSSV-------------RFENEQRVLGFYFSGHPL-DVYKPI--LRKMGIKGYEESV 987 S + S+ + E+ ++GFY S HPL + +P+ L +G+ EE Sbjct: 946 SGDLSTAPKAAPVPDYPPTEKLRLEKDLVGFYLSDHPLKQLTRPVQLLSPVGLGSLEEQA 1005 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 R + + MV + TRKG R+ + + + EA FP Sbjct: 1006 DKTR---VSVVGMVAGLRPVTTRKGDRMAVLQLEDLSGSCEAVVFP 1048 >gi|323705009|ref|ZP_08116585.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535435|gb|EGB25210.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 1144 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1058 (38%), Positives = 617/1058 (58%), Gaps = 63/1058 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + ++ + +IAITD ++ A++F ++A + G++PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKELIKRTKELGMNSIAITDHGVMYGAIDFYKEAVSYGVKPI 61 Query: 71 IGCQLDIDMQ---------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IGC++ + + DNL ++LL GY+ L+++VS+ + Sbjct: 62 IGCEIYVSPRSLYDKEYGIDNLNY------------HLILLCKNMTGYENLMKIVSKASI 109 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD- 180 D RI +L+E +EGLI L+ G I + + A++ + + +FG Sbjct: 110 -DGFYYKPRIDHQYLKE-HSEGLIALSSCLGGEIPSYLISDDYEKAKETAIFYNSIFGTG 167 Query: 181 RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQ H + + S++++L+ +PLVATN+ +L +ED+ AH+VL+ + Sbjct: 168 NFYLELQYHGLSQQEKVNSELIKLSQELNIPLVATNDVHYLKKEDHLAHEVLLCIQTGKN 227 Query: 240 VSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + DR D YLK+ EM +FS EALENTV+IA C+ + + LP+F Sbjct: 228 MDDSDRMSFPTDQFYLKSPDEMYEMFSYCKEALENTVKIADMCNLEFEFNKTKLPKF--- 284 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E D K +E LR + GL R + +RL++EL+VI +M + YFL Sbjct: 285 EVPDGMKSDEY-LRKLCIDGLYKRYPNPT-------DEVMERLNYELSVIEKMGYVDYFL 336 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI++A+ N I GPGRGS AGS+ AY L IT IDP++++LLFERFLNP+R+SMPD Sbjct: 337 IVWDFIKFARDNGIMTGPGRGSAAGSLVAYCLGITKIDPIKYNLLFERFLNPERVSMPDI 396 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DFC +RR EVI YV KYG +RVAQIITFG++ A+AA+RDVGRAL PY++VD + K+ Sbjct: 397 DSDFCYERRQEVIDYVVKKYGEDRVAQIITFGTMAARAAIRDVGRALNFPYAEVDVIAKM 456 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + + +AI + ++ D + RL++IS+ LEGL RHASTHAAG+VI P Sbjct: 457 IPFELGMTID-KAIELNPELKDKYEKDEKIRRLIDISRSLEGLPRHASTHAAGVVISSEP 515 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 L + VP+ ++ S VTQF M +E+ GL+K DFLGL+TLT+++ +LD + + RG+ VD Sbjct: 516 LVKYVPLQKNEGS--IVTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDIVKETRGIDVD 573 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I F+D E Y L++ T G+FQLESSGM+Q + ++P+ +ED+IA +SLYRPGP+D Sbjct: 574 IDSIDFEDKEVYALISRGDTEGVFQLESSGMKQFMTELRPEKLEDVIAGISLYRPGPMDQ 633 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y KN E I HPL+ P+L T G ++YQEQVMQI + L+GYSL +D++RRAM Sbjct: 634 IPRYIENKNNPENIKYEHPLLKPILDVTYGCMVYQEQVMQIVRDLAGYSLGRSDLVRRAM 693 Query: 718 GKKIKEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 KK + M+++++ FI GA G+ + A +F+ + FA+Y FNKSH Sbjct: 694 AKKKMKVMEEERKNFIYGIKDENGNYVVPGAVNRGVDEATANRLFDEMIDFANYAFNKSH 753 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 AAAYAV+++QTA++K +YPVEF+AA + +DN +K+ + Q ++ IQI+PP +N Sbjct: 754 AAAYAVVAFQTAYLKRYYPVEFMAALLNSFVDNTDKVAFYVQVLKKIGIQILPPDINESY 813 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V + +I + LAA+K VG I+E + + S+ DF R+D +LN++ +ES Sbjct: 814 SYFTVVNGKIRFGLAAVKNVGLNATLEIVEDRKKNGRYTSIIDFFERIDEMQLNKKAVES 873 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ AGA D FG R QLL + I + + ++F + + +L Sbjct: 874 LIKAGAFDSFGVYRSQLLAVYEGIMESIHRSREKNIKGQMSLFESDSESHKIDYSLPDIK 933 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESV---ATIRGNNI 995 + V E+ +G Y SGHPLD Y+ +R++ +K ++S + ++ Sbjct: 934 EFSKGVILSMEKETMGLYISGHPLDEYQDDIRRIANCTTRDLKNSDDSFVKKSAFDDQDV 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 L +V SK+ K T+ + + +V ++ E FP Sbjct: 994 VLVGIVESKKIKFTKNNNMMAFVNLADLYGTIEVIVFP 1031 >gi|255319195|ref|ZP_05360412.1| DNA polymerase III subunit alpha [Acinetobacter radioresistens SK82] gi|262379698|ref|ZP_06072854.1| DNA polymerase subunit III [Acinetobacter radioresistens SH164] gi|255303588|gb|EET82788.1| DNA polymerase III subunit alpha [Acinetobacter radioresistens SK82] gi|262299155|gb|EEY87068.1| DNA polymerase subunit III [Acinetobacter radioresistens SH164] Length = 1188 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1014 (39%), Positives = 597/1014 (58%), Gaps = 50/1014 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ D+ PA+A+TD +NL +A++F K GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRVPDLVKAAQKDEMPALALTDLSNLHAAVKFYGKCLGKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ ++ +MT LL T G++ L ELVS Y+ +G+Q Sbjct: 63 LGSEIRLNDAEH-RMT--------------LLAMTNTGWRNLTELVSEGYI--RGQQLDI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ + + LI L G +S + + ++ Q AE L + FG+R+Y+ L R Sbjct: 106 PCVQKEWILD-QNQDLIALLGMNSD-VGKMLITSNPQKAEPLLEEWIAKFGNRVYLALTR 163 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 G D + + V+LA + + +VA N+ F++ +D+EAH+ + +A V+ RP Sbjct: 164 TNRPGEDDFI-IEAVKLAQKYNIGVVAHNDVHFMTRDDFEAHEARVCIADGYVLGDNRRP 222 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +P+ Y K+ EM +FSD+P A+ENT IA+RC+ LQ+ LP + E I Sbjct: 223 KTYSPEQYFKSSEEMTELFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEGYTI-- 280 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + + + GLE RL Y + Y +R+++E+N+I M F GYFLI Sbjct: 281 --DTFFAHLSKEGLEERLNFLYPPEERDEYWPEIRKPYDERIEYEINIINSMGFPGYFLI 338 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD Sbjct: 339 VMDFIQWSKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFD 398 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC RD VI YV YG + V+QI TFG++ AK A+RDV R L Y DR+ KLI Sbjct: 399 VDFCIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKLI 458 Query: 480 PNDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVI 534 P P +++ + + ++ ++P D + E++ KLEG+ R+ HA G+VI Sbjct: 459 PTKPLGLSLEESLQAEPQLKDIVTNPSNPDYDDASEIWEMALKLEGITRNTGKHAGGVVI 518 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-- 592 ++ + D V QF+ +E AGL+KFDFLGL+ LT+++ ++ + +R Sbjct: 519 SPTKITDFSAVMCDADGTARVAQFDKDDVEAAGLVKFDFLGLRNLTVIEDAVKNINKRIK 578 Query: 593 -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D++ IP +D + Y + T +FQ ES GM++ L+ +P E+IIA VSLYR Sbjct: 579 SDKPLDIAAIPLEDKDAYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYR 638 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D I + +R +G E +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD Sbjct: 639 PGPMDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGAD 697 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ++ FI GA+K I + A +IF+ + KFA YGFNKSHAAAYA+ Sbjct: 698 LLRRAMGKKKPEEMVKQRKIFIEGAAKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYAL 757 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++YQTAW+K HYP EFLAA M+ EM N + + D R+ N++++PPSVN F Sbjct: 758 VAYQTAWLKAHYPAEFLAAVMSSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSIYQFHAI 817 Query: 832 DNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D + I Y L AIKGVG + ++++ + P+ L DFC R+D KK+N+R LE+L+ AG Sbjct: 818 DEKTIVYGLGAIKGVGEAAMQSVIDSRNQQGPYKDLFDFCHRIDLKKINKRTLEALIRAG 877 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENS 948 ALDC G R L+ L + A +NR ++F E+ ++ +S E Sbjct: 878 ALDCLGIERADLMAQLPEAVQAADQARQNRETGIMDLFGEVEEIQRKPAKPVKPWSDE-- 935 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 VR + E+ LG Y +GHP++VY+P L+ E T RG A +V+ Sbjct: 936 -VRLKGEKDTLGLYLTGHPINVYRPELKSFVPSRLNELTPTRRGVTTVFAGLVI 988 >gi|325135612|gb|EGC58229.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M0579] Length = 1144 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1041 (38%), Positives = 597/1041 (57%), Gaps = 54/1041 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+SL+ A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLSLEKAMETEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + D + G + Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDII 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+D Sbjct: 586 DVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRRA Sbjct: 646 NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQT Sbjct: 705 MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835 AW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D +I Sbjct: 765 AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ GA D Sbjct: 825 RYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENS 948 +R LL ++D N K N A++ G F + + L + + Sbjct: 885 EPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAPMWSE 935 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQK 1007 S + E+ V+GFY SGHP Y +R++ + ++ ++ +++RLA V + + Sbjct: 936 SEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVTAVRTM 991 Query: 1008 KTRKGSRIGWVTFSEPAKEYE 1028 ++G +I +V+ + + + E Sbjct: 992 MGKRG-KIAFVSLEDLSGQVE 1011 >gi|118497099|ref|YP_898149.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. novicida U112] gi|194323396|ref|ZP_03057173.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. novicida FTE] gi|208778892|ref|ZP_03246238.1| DNA polymerase III alpha subunit [Francisella novicida FTG] gi|118423005|gb|ABK89395.1| DNA polymerase III, alpha subunit [Francisella novicida U112] gi|194322251|gb|EDX19732.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. novicida FTE] gi|208744692|gb|EDZ90990.1| DNA polymerase III alpha subunit [Francisella novicida FTG] Length = 1159 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1022 (39%), Positives = 606/1022 (59%), Gaps = 41/1022 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131 +L +D T F + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 SWL E+ E +I L GG G + +A A++ + ++FG Y+ Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170 Query: 192 YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247 Y+ Y E + ++ A + L VATN ++F+ +DY+ H++ + +T++ + + + Sbjct: 171 YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP ++ +KE Sbjct: 230 FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VDIPAGLTEKEY 288 Query: 308 ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++L GL+ RL + A + + Y+ RL E+++I M F GYFLIV D Sbjct: 289 FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 346 FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP Sbjct: 406 CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + + + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 466 PGTTFK-KILHEGEPLYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + A+R +D+ Sbjct: 525 APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 585 ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMG Sbjct: 645 PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK EEM+KQ++ F GA+K + I +A IF+ + FA YGFNKSHAAAYA+I+YQTA Sbjct: 705 KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836 W+K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 765 WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L AIKG+G + I+ E F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 825 LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952 +R S++ K A +V + +++F + LE+ VE +++ Sbjct: 885 KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010 NE++ LG YFSGH +D + E+ + GN++R +A+M+ ++KT+ Sbjct: 945 INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004 Query: 1011 KG 1012 G Sbjct: 1005 TG 1006 >gi|261378286|ref|ZP_05982859.1| DNA polymerase III, alpha subunit [Neisseria cinerea ATCC 14685] gi|269145377|gb|EEZ71795.1| DNA polymerase III, alpha subunit [Neisseria cinerea ATCC 14685] Length = 1144 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1046 (39%), Positives = 597/1046 (57%), Gaps = 64/1046 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M FSDLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLVKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYCFTPY 819 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N +I Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PNMKIRYALGAIKGTGEAAVESIITARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVRLVDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002 + + S + E+ V+GFY SGHP Y +R++ + ++ +++RLA V Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVT 986 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++G +I +V+ + + + E Sbjct: 987 AVRTMMGKRG-KIAFVSLEDLSGQIE 1011 >gi|308389929|gb|ADO32249.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis alpha710] Length = 1144 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1041 (38%), Positives = 599/1041 (57%), Gaps = 54/1041 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC---D 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSRD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+SL A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + D + G + Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDII 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+D Sbjct: 586 DVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRRA Sbjct: 646 NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQT Sbjct: 705 MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835 AW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D +I Sbjct: 765 AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ GA D Sbjct: 825 RYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENS 948 +R LL ++D N K N A++ G F + + L + + Sbjct: 885 EPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAPMWSE 935 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQK 1007 S + E+ V+GFY SGHP Y +R++ + ++ ++ +++RLA V + + Sbjct: 936 SEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVTAVRTM 991 Query: 1008 KTRKGSRIGWVTFSEPAKEYE 1028 ++G +I +V+ + + + E Sbjct: 992 MGKRG-KIAFVSLEDLSGQVE 1011 >gi|254372464|ref|ZP_04987953.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. novicida GA99-3549] gi|151570191|gb|EDN35845.1| DNA polymerase III alpha subunit [Francisella novicida GA99-3549] Length = 1159 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1022 (39%), Positives = 607/1022 (59%), Gaps = 41/1022 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131 +L +D T F + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 SWL E+ E +I L GG G + +A A++ + ++FG Y+ Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170 Query: 192 YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247 Y+ Y E + ++ A + L VATN ++F+ +DY+ H++ + +T++ + + + Sbjct: 171 YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP ++ +KE Sbjct: 230 FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VDIPAGLTEKEY 288 Query: 308 ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++L GL+ RL + A + + Y+ RL E+++I M F GYFLIV D Sbjct: 289 FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 346 FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP Sbjct: 406 CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + + + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 466 PGTTFK-KILHEGEPLYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV---KVDL 598 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + A+R ++D+ Sbjct: 525 APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKRLDI 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 585 ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMG Sbjct: 645 PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK EEM+KQ++ F GA+K + I +A IF+ + FA YGFNKSHAAAYA+I+YQTA Sbjct: 705 KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836 W+K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 765 WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L AIKG+G + I+ E F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 825 LGLGAIKGLGGEAIKSILTERDIAGEFCSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952 +R S++ K A +V + +++F + LE+ VE +++ Sbjct: 885 KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010 NE++ LG YFSGH +D + E+ + GN++R +A+M+ ++KT+ Sbjct: 945 INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004 Query: 1011 KG 1012 G Sbjct: 1005 TG 1006 >gi|329118563|ref|ZP_08247267.1| DNA-directed DNA polymerase III alpha subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327465298|gb|EGF11579.1| DNA-directed DNA polymerase III alpha subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 1142 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1027 (39%), Positives = 582/1027 (56%), Gaps = 66/1027 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P ++ L++H+ +S+ +G + + ++ K PA+ I+D N F+ ++F + AGI Sbjct: 3 APVYIPLRLHTEFSITDGMVRIKEVVKKAQEYGFPALGISDLMNEFALVKFYKACRGAGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +P+ + I G P P +L++ GY RL EL++ Y+ +G+ Sbjct: 63 KPVGAADVWI-----------GNPAAPDKPFRAMLIIRNEAGYLRLSELLTAAYV-GEGR 110 Query: 127 --QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + WL GLI L+G G + + A L + F + Y+ Sbjct: 111 NLHHAELNPEWLDSGDNSGLICLSGAHLGEMGVNLLNGNEDAARAAALKYAAWFPNAFYL 170 Query: 185 NLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 LQR + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 171 ELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTD 230 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-- 299 K RPR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 231 KKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGL 290 Query: 300 -CDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 DD + NE GL+ R+ Q + +Y++RLDFELN+I +MKF G Sbjct: 291 SLDDYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPG 343 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SM Sbjct: 344 YFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSM 403 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L Sbjct: 404 PDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKL 463 Query: 476 CKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 464 SKLIPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLI 522 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG 593 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + D + A G Sbjct: 523 APGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKATTG 582 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPG Sbjct: 583 DIVDVGTIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPG 642 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+L Sbjct: 643 PMDNIPDFVARMKGQE-FQYIHPLLEDILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLL 701 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+IS Sbjct: 702 RRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALIS 761 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGD 832 YQTAW+K HYP EF+AA+M+ E+DN +++K F D R I +PP +N F G+ Sbjct: 762 YQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGITFLPPDINESSYRFVPDGN 821 Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +I Y+L AIKG G I+ A A F L DFC RV +NRR LE+L+ GA Sbjct: 822 KQIRYALGAIKGTGEAAVESIIAAREAGGKFTGLLDFCERVGKDHMNRRTLEALIRGGAF 881 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSV 945 D +R L+ ++D +N K N A++ G F + + L Sbjct: 882 DSIEPNRAMLMANID-------LAMENADQKAAN--ANQGGLFDMMDDAIEPVKLSAAPA 932 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--------------IKGYEESVATIR 991 + S + E+ V+GFY SGHP Y+ +R+ + G+ V T+ Sbjct: 933 WSESEKLAEEKTVIGFYLSGHPFAPYEQEIRRFAPVSLGRLKTQDSVRVAGFATGVRTMN 992 Query: 992 GNNIRLA 998 G + R A Sbjct: 993 GKSGRFA 999 >gi|254373926|ref|ZP_04989408.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548] gi|151571646|gb|EDN37300.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548] Length = 1159 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1022 (39%), Positives = 605/1022 (59%), Gaps = 41/1022 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131 +L +D T F + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 SWL E+ E +I L GG G + +A A++ + ++FG Y+ Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170 Query: 192 YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247 Y+ Y E + ++ A + L VATN ++F+ +DY+ H++ + +T++ + + + Sbjct: 171 YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP + +KE Sbjct: 230 FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288 Query: 308 ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++L GL+ RL + A + + Y+ RL E+++I M F GYFLIV D Sbjct: 289 FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 346 FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP Sbjct: 406 CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + + + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 466 PGTTFK-KILHEGEPLYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + A+R +D+ Sbjct: 525 APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 585 ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMG Sbjct: 645 PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK EEM+KQ++ F GA+K + I +A IF+ + FA YGFNKSHAAAYA+I+YQTA Sbjct: 705 KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836 W+K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 765 WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L AIKG+G + I+ E F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 825 LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952 +R S++ K A +V + +++F + LE+ VE +++ Sbjct: 885 KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010 NE++ LG YFSGH +D + E+ + GN++R +A+M+ ++KT+ Sbjct: 945 INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004 Query: 1011 KG 1012 G Sbjct: 1005 TG 1006 >gi|310641197|ref|YP_003945955.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2] gi|309246147|gb|ADO55714.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2] Length = 1221 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/1039 (39%), Positives = 614/1039 (59%), Gaps = 36/1039 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA ++ + +A A+A+TD ++ A+ F + GI+P Sbjct: 3 SFVHLHVHSEYSLLDGAARTAELVKQASAYGMKALALTDHGVMYGAIPFYRACVENGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+ + + ++ P + ++LL GYQ L++L S +L + Sbjct: 63 IIGCEAYMTAGSRKERGSRKDQP---IYHLILLAKNKTGYQNLMKLCSIGHL-EGFHYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI + L EG+I L+ G + + A + ++ +FGD Y+ LQ H Sbjct: 119 RIDMDALAA-HHEGIICLSACLGGEVPQHLLHGREAEARRAAERYRSIFGDDFYLELQDH 177 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ R Q++ LA ++PLVATN+ +L+E D + DVL+ + V ++R R+ Sbjct: 178 GLSEQKRVNPQLIALAKELDIPLVATNDVHYLTEPDADVQDVLICIGTGKTVDDEERLRI 237 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T YLK++ EM +F + EA+ NTV IA +C L+ ILP + D Sbjct: 238 PTRQLYLKSQEEMARLFPHVAEAIANTVRIAEKCELELEFGQSILPEYRPLPED---MTS 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR+ V GLE R + + ++ QRL++ELN I M FS YFLIV DFI + Sbjct: 295 SSYLRSLCVQGLERRYGGDPVWEQPEERERLDQRLNYELNTIDSMGFSDYFLIVWDFIAF 354 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A K+ I GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDF +R Sbjct: 355 AHKHKITTGPGRGSSAGSLVAYVLNITNVDPMKYNLLFERFLNPERISMPDIDIDFSDER 414 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV KYG+E VAQIITFG+L A+AA+RDVGR L +PY +VD+ KLIP Sbjct: 415 RDEVIDYVVQKYGNEHVAQIITFGTLAARAAVRDVGRVLNVPYGEVDKAAKLIPAQLGIN 474 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + A+ + P LL+++ K+EG+ RHASTHAAG+VI PL+ VP+ Sbjct: 475 IR-HALEITPELKALYETKPKTRELLDMAIKVEGMPRHASTHAAGVVISRTPLTDAVPL- 532 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 ++ +P+TQ++M+ +E+ GL+K DFLGL+TL+++++ + ++A Q G D S +P DD Sbjct: 533 QEGSEGVPLTQYSMENLERIGLLKMDFLGLRTLSIIERCMRWIAEQHGETPDFSRVPDDD 592 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 TY LL T G+FQLES+G+R+ L+ ++P EDII++V+LYRPGP+ I + K Sbjct: 593 PHTYDLLGKGDTGGVFQLESAGVRRVLKDLKPSVFEDIISVVALYRPGPMGFIPNFIQAK 652 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+ +I HP ++P+LK+T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E + Sbjct: 653 HGQIEISYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVL 712 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D ++ F+ G+ K G ++ A +++++ +FADYGF ++HAAAY V+++QTA++K HYPV Sbjct: 713 DLERGHFVEGSIKQGYTEEEAGRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPV 772 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---KVGDNRIYYSLAAI 842 +F+A+ +T M + K+ ++ + R+ +I ++PP VN V F + GD I + LAAI Sbjct: 773 QFMASMLTAVMGSHRKVAEYVVECRRMDIAVLPPDVNESGVLFTPLQHGD--IRFGLAAI 830 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 K VGT I+ ++PFDSL DFC RVD + N+RV+ESL+ AGA D R QLL Sbjct: 831 KNVGTQAMESILAVRKERPFDSLLDFCRRVDLRVCNKRVIESLIQAGAFDSLTGHRAQLL 890 Query: 903 QSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQR--- 957 LD + A+W K R + ++F + + + +E +V F Q+ Sbjct: 891 AMLDETVDAAAKW-RKERDDLQIDMFGF--------VEMPNWDIEYPNVPPFSTSQQLEL 941 Query: 958 ---VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 +LG Y SGHPLD ++ +L E I A MVVS + T++G Sbjct: 942 ERELLGLYLSGHPLDDFESLLESSQADRLMELSDVPDETVIVTAGMVVSLKTITTKQGKA 1001 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++ + + E FP Sbjct: 1002 MAFIELEDQIERCEVVLFP 1020 >gi|313669043|ref|YP_004049327.1| DNA polymerase III, alpha subunit [Neisseria lactamica ST-640] gi|313006505|emb|CBN87969.1| putative DNA polymerase III, alpha subunit [Neisseria lactamica 020-06] Length = 1144 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/1045 (38%), Positives = 595/1045 (56%), Gaps = 62/1045 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + +AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 P+ + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PVGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + MV F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPGQFFIPPETMVERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L KL Sbjct: 407 DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+SL A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G +K IHPL++ +L T G+++YQEQVMQ+AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKG-QKFQYIHPLLEGILDPTYGIMVYQEQVMQVAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D +I Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PDMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLVDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + S + E+ V+GFY SGHP Y + ++ + +++RLA V + Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTA 987 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028 + ++G +I +V+ + + + E Sbjct: 988 VRTMMGKRG-KIAFVSLEDLSGQVE 1011 >gi|134302515|ref|YP_001122485.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|134050292|gb|ABO47363.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 1159 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1022 (39%), Positives = 605/1022 (59%), Gaps = 41/1022 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131 +L +D T F + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 SWL E+ E +I L GG G + +A A++ + ++FG Y+ Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170 Query: 192 YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247 Y+ Y E + ++ A + L VATN ++F+ +DY+ H++ + +T++ + + + Sbjct: 171 YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP + +KE Sbjct: 230 FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288 Query: 308 ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++L GL+ RL + A + + Y+ RL E+++I M F GYFLIV D Sbjct: 289 FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 346 FIRWSKENDIPVGPGRGSGAGSMVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP Sbjct: 406 CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + + + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 466 PGTTFK-KILHEGEPLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + A+R +D+ Sbjct: 525 APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 585 ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMG Sbjct: 645 PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK EEM+KQ++ F GA+K + I +A IF+ + FA YGFNKSHAAAYA+I+YQTA Sbjct: 705 KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836 W+K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 765 WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L AIKG+G + I+ E F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 825 LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952 +R S++ K A +V + +++F + LE+ VE +++ Sbjct: 885 KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010 NE++ LG YFSGH +D + E+ + GN++R +A+M+ ++KT+ Sbjct: 945 INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004 Query: 1011 KG 1012 G Sbjct: 1005 TG 1006 >gi|253581934|ref|ZP_04859158.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] gi|251836283|gb|EES64820.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] Length = 1138 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/980 (40%), Positives = 602/980 (61%), Gaps = 41/980 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSLL+G +++ LD+ A AIAITD NLF LEF +KA GI+P Sbjct: 4 NFVHLHLHTEYSLLDGVGKIDDYLDRTKALNMQAIAITDHGNLFGVLEFYKKAIKKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128 IIG L+ + + + +G+ + +VLL +GYQ L+++ S Y+ +G Sbjct: 64 IIG--LEAYVSEFSMLEKEGR-----IFHLVLLAENNKGYQNLLKISSESYI--KGFYYK 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNL 186 RI +L+ + +EG+I L+ G I R N S+ ++ + +FG D Y+ + Sbjct: 115 PRIDKEFLK-MHSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEV 173 Query: 187 QRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Q + +G E ++ LA H+L +VATN++ +++E ++ D+L+ V V+ + Sbjct: 174 QANGVKGQTALNE-KLYNLAQKHQLKMVATNDTHYVNEGEHTLQDILICVQTGAKVADEK 232 Query: 245 RPRVTPDH-YLKNRSEMV-SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R+ D +LK+R +++ + + EA+ NT+EIA RC+ ++ P + E Sbjct: 233 RMRIETDELFLKSREQIIDGLGAKYLEAVNNTIEIAERCNVNIEFGKFKFPEY---EIPS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 K E LR GL R G +R+++EL+VI +M ++ YF++V D Sbjct: 290 CVKTIEEFLRKLVYFGLSKRYPHGLTI------SVLERVEYELSVIEKMGYAAYFVVVWD 343 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI +AK+N IP+GPGRGS AGS+ AYAL IT++DPL ++L+FERFLNP+R+SMPD DID Sbjct: 344 FIDYAKRNRIPIGPGRGSAAGSLVAYALRITELDPLDYNLIFERFLNPERISMPDIDIDI 403 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+RR EVI YV KYG ++VAQIITFG+++A+AA+RDVGR + P S+VD + KL+P + Sbjct: 404 CQERRQEVIEYVIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTPLSKVDSIAKLVPFN 463 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +L + + F+ L DP + ++++IS +LE RHAS HAAGIVI PL+ Sbjct: 464 ATIQQTLNNVEE---FKNMYLNDPEIQKVIDISARLENKVRHASIHAAGIVITKDPLTDT 520 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+Y D ++ + TQ+ MK +E GL+K DFLGL+ LT LQ+++D++ + G ++LS I Sbjct: 521 VPLYSDNKNKVVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGEDIELSEI 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660 P + + Y +L+ T G+FQ+ES G+R+ L ++PD EDIIAL++LYRPGP+ + +V Sbjct: 581 PLNSKKVYEMLSRGDTSGVFQMESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVD 640 Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + N KNG +I HP ++ LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGK Sbjct: 641 DFINGKNGTSEIKYPHPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGK 700 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + M++ +E+F+ + NG +K A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ Sbjct: 701 KNIQIMEENREKFVERSMANGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYF 760 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +Y + A+ MT EM +VE I + +DA+ N+++ P VN F V I +SL Sbjct: 761 KAYYMKHYYASLMTSEMSHVEDIAFYMEDAKVHNLKLHLPDVNRASPKFIVDKEGIIFSL 820 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AAIK VG + I+ E + + + + EDF R LN++ LESL+ AGALD +R Sbjct: 821 AAIKNVGEGVSGKILEECNENGKYKNFEDFVVRTRKHGLNKKALESLILAGALDGLPGNR 880 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENE 955 Q +S+D I YA K + N+F K G F+ + ++S+E R E Sbjct: 881 RQKFESVDKILDYATRKIKEDEIQQMNLFGEAKSSLGVFTLP-QIPEYSLEELLAR---E 936 Query: 956 QRVLGFYFSGHPLDVYKPIL 975 + LGFYFS HPLD Y+ ++ Sbjct: 937 KEYLGFYFSAHPLDNYRRLI 956 >gi|319409850|emb|CBY90162.1| DNA polymerase III alpha subunit [Neisseria meningitidis WUE 2594] Length = 1144 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1046 (38%), Positives = 598/1046 (57%), Gaps = 64/1046 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N +I Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002 + + S + E+ V+GFY SGHP Y +R++ + ++ ++ +++RLA V Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++G +I +V+ + + + E Sbjct: 987 AVRTMMGKRG-KIAFVSLEDLSGQVE 1011 >gi|304388354|ref|ZP_07370467.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis ATCC 13091] gi|304337671|gb|EFM03827.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis ATCC 13091] Length = 1144 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1035 (38%), Positives = 596/1035 (57%), Gaps = 42/1035 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I D PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGNPD------APDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYMELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR TPD + M+ F+DLPEALENTVEIA+RC+ + + LP F D + Sbjct: 234 PRDFTPDQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLF--PTPDGLS 291 Query: 305 KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +++ +L N+ + V+L + +Y++RLDFELN+I +MKF GYFLIV DF Sbjct: 292 RDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDF 351 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFC Sbjct: 352 INWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFC 411 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L KLIP + Sbjct: 412 QANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEA 471 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P+SL A+ + + +E A+ D L+ +++KLE L R HA G++I +S Sbjct: 472 NKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDY 530 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------V 596 P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K + Sbjct: 531 SPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTTGDII 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+D Sbjct: 586 DVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRRA Sbjct: 646 NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQT Sbjct: 705 MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835 AW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D +I Sbjct: 765 AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ GA D Sbjct: 825 RYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R LL ++D A +K +F + + + L + + S + Sbjct: 885 EPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAI-EPVRLIDAPMWSESEKLAE 941 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + ++ +++RLA V + + ++G Sbjct: 942 EKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTAVRTMMGKRG- 996 Query: 1014 RIGWVTFSEPAKEYE 1028 +I +V+ + + + E Sbjct: 997 KIAFVSLEDLSGQVE 1011 >gi|325129568|gb|EGC52392.1| DNA polymerase III, alpha subunit [Neisseria meningitidis OX99.30304] Length = 1144 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1041 (38%), Positives = 596/1041 (57%), Gaps = 54/1041 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 P TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PHDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+SL+ A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLSLEKAMETEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + D + G + Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDII 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+D Sbjct: 586 DVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRRA Sbjct: 646 NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQT Sbjct: 705 MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835 AW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D +I Sbjct: 765 AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ GA D Sbjct: 825 RYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENS 948 +R LL ++D N K N A++ G F + + L + + Sbjct: 885 EPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAPMWSE 935 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQK 1007 S + E+ V+GFY SGHP Y +R++ + ++ ++ +++RLA V + + Sbjct: 936 SEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVTAVRTM 991 Query: 1008 KTRKGSRIGWVTFSEPAKEYE 1028 ++G +I +V+ + + + E Sbjct: 992 MGKRG-KIAFVSLEDLSGQVE 1011 >gi|325201527|gb|ADY96981.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240149] gi|325207506|gb|ADZ02958.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NZ-05/33] Length = 1144 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1041 (38%), Positives = 599/1041 (57%), Gaps = 54/1041 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F D + Sbjct: 234 PRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLF--PTPDGLS 291 Query: 305 KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +++ +L NK + V+L + +Y++RLDFELN+I +MKF GYFLIV DF Sbjct: 292 RDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDF 351 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFC Sbjct: 352 INWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFC 411 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L KLIP + Sbjct: 412 QANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEA 471 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I +S Sbjct: 472 NKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDY 530 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------V 596 P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K + Sbjct: 531 SPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTTGDII 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+D Sbjct: 586 DVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRRA Sbjct: 646 NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQT Sbjct: 705 MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835 AW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D +I Sbjct: 765 AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ GA D Sbjct: 825 RYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENS 948 +R LL ++D N K N A++ G F + + L + + Sbjct: 885 EPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAPMWSE 935 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQK 1007 S + E+ V+GFY SGHP Y +R++ + ++ ++ +++RLA V + + Sbjct: 936 SEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVTAVRTM 991 Query: 1008 KTRKGSRIGWVTFSEPAKEYE 1028 ++G +I +V+ + + + E Sbjct: 992 MGKRG-KIAFVSLEDLSGQVE 1011 >gi|309378417|emb|CBX22970.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 1144 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1045 (38%), Positives = 594/1045 (56%), Gaps = 62/1045 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + +AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 P+ + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PVGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L KL Sbjct: 407 DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+SL A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G +K IHPL++ +L T G+++YQEQVMQ+AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKG-QKFQYIHPLLEGILDPTYGIMVYQEQVMQVAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D +I Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PDMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLVDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + S + E+ V+GFY SGHP Y + ++ + +++RLA V + Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTA 987 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028 + ++G +I +V+ + + + E Sbjct: 988 VRTMMGKRG-KIAFVSLEDLSGQVE 1011 >gi|315924608|ref|ZP_07920827.1| DNA-directed DNA polymerase III alpha subunit [Pseudoramibacter alactolyticus ATCC 23263] gi|315622138|gb|EFV02100.1| DNA-directed DNA polymerase III alpha subunit [Pseudoramibacter alactolyticus ATCC 23263] Length = 1178 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1067 (39%), Positives = 603/1067 (56%), Gaps = 72/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VHS YSLL+G +++ + A+A+TD LF +EF + A GI P Sbjct: 4 SFTHLHVHSEYSLLDGFGRISDYVQTAKEMGMNALALTDHGVLFGGIEFYKACVARGINP 63 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIGC++ + + L K + P+ ++LL EGY+ L ++VS+ ++ D Sbjct: 64 IIGCEVYVAPRTLLDKEAGKDSRPY----HLILLAENNEGYRNLSKIVSKGFI-DGFYYK 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L+ EG+I L+ +G I RA AE T+ +FG D ++ +Q Sbjct: 119 PRIDHDTLRRY-REGIICLSACIAGEIPRAVLEEQPARAEALCETYIDIFGKDHFFLEIQ 177 Query: 188 RHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 HR +E++V LA + + L ATN+ ++ ++DYEAHDVL+ + + V + Sbjct: 178 DHR---LSKEAKVREFLFHLADKYGIGLAATNDCHYVRQDDYEAHDVLLCIGTGSTVDET 234 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR R D YLK+ EM ++F D PEAL NT +IA RC + + LP+F E + Sbjct: 235 DRMRYANDQFYLKSPEEMAAMFPDHPEALANTQKIADRCHVTFDLESAHLPKF---ELPE 291 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIV 360 E + +R+ AGL AK Y + R+R+D+EL I M F YFL+V Sbjct: 292 GYTEAGDYVRHLCEAGL---------AKRYDTITPEIRERMDYELKTIHTMGFDDYFLVV 342 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +AK +NIPVGPGRGS AGS+ AYAL IT +DPL+++LLFERFLNP+R++MPD D Sbjct: 343 WDFIHYAKTHNIPVGPGRGSAAGSLAAYALDITTLDPLQYNLLFERFLNPERVTMPDIDC 402 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC +RR EVI YV KYG +RVAQIITFG++ A+ A+RDVGR L +PY+QVD++ K IP Sbjct: 403 DFCYERRQEVIDYVIRKYGKDRVAQIITFGTMAARGAVRDVGRVLGIPYAQVDKVAKEIP 462 Query: 481 NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P VS+ +AI ++ ++ +D V RLL +S+K+EGL RHASTHAAG+VI D PL Sbjct: 463 MRPGQSVSIHEAIEENPDLKQMADSDAEVRRLLAMSEKMEGLARHASTHAAGVVISDAPL 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDL 598 ++ VP+YR+ D TQ+ M +E GLIK DFLGL+TLT++ ++ + RG+ VD+ Sbjct: 523 TEYVPLYRN--GDAITTQYTMNLLEDLGLIKMDFLGLRTLTVIADAVANIQESRGIAVDI 580 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I D Y ++ + LG+FQLES GM + +QP EDIIA +SLYRPGP+D I Sbjct: 581 DHIDMHDAGVYEMIASGDCLGVFQLESRGMIAFMRELQPQTFEDIIAGISLYRPGPMDQI 640 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y K E I H + P+L T G ++YQEQVMQI + L+G+S+ +D++RRAM Sbjct: 641 PRYIANKKDPEHIAYTHEALRPILNVTYGCMVYQEQVMQIFRDLAGFSMGRSDLVRRAMS 700 Query: 719 KKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 KK E MD + E FI GA GI + A I+E + FA Y FNKSHA Sbjct: 701 KKKSEVMDAEGEVFIHGERDTDGQVVVPGAVAKGIPEAAARRIYEEMKDFAKYAFNKSHA 760 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYAVI+YQTAW+K HYP EF+AA M+ MDN +KI ++ + ++ I+++ P VN Sbjct: 761 AAYAVIAYQTAWLKRHYPAEFMAALMSSVMDNEKKISQYIDNCKRRGIRVLLPDVNISRR 820 Query: 827 DFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRR 880 F V G + L AIKG+G I+ A + F DFC +VDS +N++ Sbjct: 821 KFSVEINADGRENVRMGLGAIKGLGDKPIAAIVNARQTEGAFTGFRDFCEKVDSHAVNKK 880 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTF 934 +L+ AGA D G R +++ D I + +++R + ++ A++ TF Sbjct: 881 AAANLILAGAFDFLGIDRARMVLGSDLIVQQVAEEKQDRLSGQMSLLDMGELNAYKGDTF 940 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVA 988 + K + + E+ VLG Y SGHPL+ Y IL + YE+ +A Sbjct: 941 PEAPPFSK------AEKLAREKEVLGLYVSGHPLEHYVGILSSETNLNSGMMDSYEDLLA 994 Query: 989 T--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G + + +V + + T+ +++ ++T + E FP Sbjct: 995 SGIPDGGRVTVGGLVDQLKVQLTKTNAQMAFLTLEDLYGRMEVVVFP 1041 >gi|303256875|ref|ZP_07342889.1| DNA polymerase III, alpha subunit [Burkholderiales bacterium 1_1_47] gi|302860366|gb|EFL83443.1| DNA polymerase III, alpha subunit [Burkholderiales bacterium 1_1_47] Length = 1148 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1023 (38%), Positives = 603/1023 (58%), Gaps = 50/1023 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+ +G L+ ++ K A A+AITD +F + F + A AAGI+PI Sbjct: 5 FVHLRMHTEFSIKDGMLNPKKVVHKAIASGMKALAITDATAMFGDVIFYKAASAAGIKPI 64 Query: 71 IGCQLDI----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +G I + D L++ + L +GY L +L+SR +L +Q K Sbjct: 65 LGGDCSITNHYNRDDYLRL--------------LFLARNHQGYLTLCDLLSRAWLTNQYK 110 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + L W+ +GLI+L+G ++G I +A S AE+ + F ++ L Sbjct: 111 DRGEVDLDWITPEMADGLIVLSGFNTGAIGKAILNGSLSAAEQEARRLSQKF-PHFFMEL 169 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR R D ++ V+LA LP+VAT F + ED+E H+ +A+A ++ K R Sbjct: 170 QRVGRPNDEMLVAESVKLAKKLGLPVVATQPIQFENSEDFEFHEARVAIADGFTLANKAR 229 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR+ TP Y + + EM +F D+P A+EN+VEIA+RC+ +++ P LP F + ++ Sbjct: 230 PRIYTPQQYFRTKEEMCELFKDIPSAIENSVEIAKRCNVTIKLGKPQLPIFPTPDGMSLK 289 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + A GL+ RL + Y++RL+ E+ +I M F GYFLIV Sbjct: 290 ----DYMAQLAREGLDRRLKVLYPDEKKREAEFPRYKERLEREIKIIQDMDFPGYFLIVQ 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 DFINWAKTHGCPVGPGRGSGAGSLVAYSLGITDLDPLAYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQ+ R VI YV++KYG E V+QI TFG++ AK ++DVGR L M YS+ DRL ++IP Sbjct: 406 FCQNNRGRVIEYVKSKYGEESVSQIATFGTMGAKGVIKDVGRVLDMSYSEADRLSRMIPT 465 Query: 482 DPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P H +L+ A++++ +FR +P +L+E + KLEG R HA G++I L Sbjct: 466 RPGHNTTLEEALSEEPQFRAEVRNNPQARKLIEYALKLEGTTRSLGIHAGGVLIAPGKLI 525 Query: 541 QLVPMYRDVRSDLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596 P+Y LP ++ ++ K +E GL+KFDFLGL TLT+++++LD++ + GV+ Sbjct: 526 DFCPLY--AAGMLPENVISMYDKKDVEAVGLVKFDFLGLTTLTIIERALDYIEKNTGVRP 583 Query: 597 DLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 D+ + DD +TY + T T+ +FQ ES GM + L +P + D+IAL +LYRPGP+ Sbjct: 584 DIEHMECDDEDTYKKIFQTGDTVAVFQFESPGMHKLLIDAKPTQLSDLIALNALYRPGPM 643 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + + + G++K P + P+L++T G+++YQEQVM +AQ + GYSL AD+LRR Sbjct: 644 DLIPDFLDIRAGRKKAEYADPRLIPILEDTAGIMVYQEQVMLVAQKIGGYSLGGADILRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM++Q + FI GA+KNG+S+ +A ++FEL+ KFA YGFNKSHAAAY+ ++Y+ Sbjct: 704 AMGKKDVAEMERQSKVFIEGAAKNGVSEEVAAHLFELMRKFAGYGFNKSHAAAYSYVAYK 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 T W+K +YP EFLA+S++ M + EK K DA++ +++++ P +N ++ Sbjct: 764 TGWLKNYYPAEFLASSLSEVMTDPEKSLKILMDAKRHSVKLLGPDINESEFNYTSPKTME 823 Query: 835 IYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I L A+KGVG+ A I E + PF D RV S+ + +++++ AG D Sbjct: 824 IRMGLGALKGVGSAPAEAIKAEREQNGPFKDPFDLVKRVGSQLITKKIIQVFAMAGVFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R + ++ D + + AQ E + ++F E S+++ +++ + + R E Sbjct: 884 IEPNRRKWFENADVVVQSAQ--ENEKAADQFSLFGEEP---SNEVPIKEVAPWSDRTRME 938 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKTR 1010 EQ VLGFYFSGHPL+ Y+ L+ + + VA N +A M + +Q++ + Sbjct: 939 KEQYVLGFYFSGHPLEAYQSELK----RNFGALVAGTESENPGEYLVAGMYLGCEQRRGK 994 Query: 1011 KGS 1013 GS Sbjct: 995 DGS 997 >gi|328675636|gb|AEB28311.1| DNA polymerase III alpha subunit [Francisella cf. novicida 3523] Length = 1159 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1020 (39%), Positives = 614/1020 (60%), Gaps = 37/1020 (3%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ +S+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGFSVVDSTVRLTDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131 +L +D T F V +VLL +GYQ ++ LVS+ Y D+ I Sbjct: 64 VELKVD------------TEF-GVCDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190 +WL++I +I L GG G + +A + A++ + ++FG Y+ ++ H+ Sbjct: 111 PKNWLKDINLANVICLNGGQQGELGKAILAKDYRKADEIINQNVEIFGANNYI-IEIHKL 169 Query: 191 GYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRP 246 Y+ Y E + ++ A + L VATN ++F+ +DY+ H++ + +T++ + + Sbjct: 170 EYENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKS 228 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + T + YLK+ EM FS LP ++NT+ IA+RC+ + ++ P LP ++ +KE Sbjct: 229 KFTKEQYLKSAEEMYETFSALPVLVDNTLAIAKRCNVMFELGKPCLPT-VDIPAGLTEKE 287 Query: 307 EENELRNKAVAG-LEVRLAQGAIAKGYHA-QDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++L + + LE LA + K H + Y+ RL E+++I M FSGYFLIV DFI Sbjct: 288 YFSKLCYQGLDKRLEKILANRSADKHEHIIKVYKDRLQREIDIICDMGFSGYFLIVEDFI 347 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 348 RWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLTYGLLFERFLNPERVSMPDFDIDFCI 407 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP P Sbjct: 408 QGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETPG 467 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + + + + + AD V ++E +QKLEGL R HAAGIVI +S P Sbjct: 468 TTFN-KILKEGEPLYDEMQADEEVAEVIERAQKLEGLPRSLGKHAAGIVISPTKISDFAP 526 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDLSL 600 +Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + A+R +D++ Sbjct: 527 IYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTIKSINAKRPADQKPLDIAD 586 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 587 IPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIPT 646 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMGKK Sbjct: 647 FIDRKHGRKQIAYLHPLLEEVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGKK 706 Query: 721 IKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 EEM++Q++ F GA+K + I +A IF+ + FA YGFNKSHAAAYA+I+YQTAW+ Sbjct: 707 KPEEMEQQRKIFKEGAAKYHNIDAKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAWL 766 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYS 838 K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D + I Sbjct: 767 KAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAISKGTILLG 826 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIKG+G + I+ E A+ F S+ D RVD +K+N++ LE+L FAGA+ + Sbjct: 827 LGAIKGLGGEAVKSILTERDAEGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDISRN 886 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--FEN 954 R S++ K A +V + +++F + LEK VE +++ N Sbjct: 887 RATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDTELEKECIVEEWNLKELLIN 946 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTRKG 1012 E++ LG YFSGH +D + + + GN++R +A+M+ ++KT+ G Sbjct: 947 EKKALGMYFSGHIIDEESHWRNHVSFSDLNKIQQPNMDGNSVRIIASMITPAIRRKTKTG 1006 >gi|319639431|ref|ZP_07994181.1| DNA polymerase III subunit alpha [Neisseria mucosa C102] gi|317399326|gb|EFV79997.1| DNA polymerase III subunit alpha [Neisseria mucosa C102] Length = 1144 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1046 (38%), Positives = 598/1046 (57%), Gaps = 64/1046 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALCISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + ++ A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNSNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F++ +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGADAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+SL+ A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLSLEKAMEAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKTT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N +I Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVQLIDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002 + + S + E+ V+GFY SGHP Y +R++ + ++ +++RLA V Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVT 986 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++G +I +V+ + + + E Sbjct: 987 AVRTMMGKRG-KIAFVSLEDLSGQIE 1011 >gi|325141631|gb|EGC64093.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945] gi|325141663|gb|EGC64124.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945] gi|325141697|gb|EGC64157.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945] Length = 1144 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1046 (38%), Positives = 598/1046 (57%), Gaps = 64/1046 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N +I Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002 + + S + E+ V+GFY SGHP Y +R++ + ++ ++ +++RLA V Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++G +I +V+ + + + E Sbjct: 987 AVRTMMGKRG-KIAFVSLEDLSGQVE 1011 >gi|310828648|ref|YP_003961005.1| DNA polymerase III DnaE [Eubacterium limosum KIST612] gi|308740382|gb|ADO38042.1| DNA polymerase III DnaE [Eubacterium limosum KIST612] Length = 1146 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1024 (38%), Positives = 608/1024 (59%), Gaps = 51/1024 (4%) Query: 40 QQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-S 98 + ++A+TD LF A++F + GI+P+IGC++ + + + +Q + T P Sbjct: 8 EMKSLALTDHGVLFGAVDFYKACLEEGIKPLIGCEVYV----SPRRLDQKEGNIDTNPYH 63 Query: 99 IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158 +VLL +GY+ L+++VS ++ D R+ +L++ EG+I L+ G I R Sbjct: 64 LVLLAENNDGYKNLMKVVSEGFI-DGFYYKPRVDHEYLRK-HHEGIICLSACIGGEIPRL 121 Query: 159 FFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVA 213 Q A + ++ +FG ++ +Q HR +E+QV + + +++PLVA Sbjct: 122 IIEGQLQKANEICQMYQDIFGKGNFFLEIQDHR---MQKEAQVNEVLIDFSKKYDIPLVA 178 Query: 214 TNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALE 272 TN+ ++ + D EAHD+L+ + + V ++R R + YLK+ EM +F D+PEA+E Sbjct: 179 TNDVHYVRKADAEAHDILLCIQTAASVDDEERMRFPNNEFYLKSPDEMSRLFIDVPEAIE 238 Query: 273 NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332 NT +IA RC+ + + LP F E + + LR AGL+ R + Sbjct: 239 NTNKIAERCNVSFDLESAHLPEF---ELPEGEPSAGGYLRKLCEAGLKARYQE------- 288 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 + ++R+D+EL+VI M F YFL+V DFI++AK ++I VGPGRGS AGS+ AY L I Sbjct: 289 ITPEIKERMDYELDVIHSMGFDNYFLVVWDFIKYAKDHDIMVGPGRGSAAGSLVAYGLDI 348 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T +DPL+++LLFERFLNP+R++MPD D DFC +RR EVI YV KYG + VAQIITFG++ Sbjct: 349 TTLDPLKYNLLFERFLNPERITMPDIDCDFCYERRQEVIDYVIRKYGADHVAQIITFGTM 408 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRL 511 A+ A+RDVGRAL MPY+ VD++ K IP P ++++ A+ ++S R+ + DP V +L Sbjct: 409 AARGAVRDVGRALNMPYNAVDKVAKEIPMHPGQNITIERALEENSELRKMKENDPEVSKL 468 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 L++++ +EGL RHASTHAAG+VI D+PL + VP+YR+ D+ TQF M +E GLIK Sbjct: 469 LDMAESMEGLARHASTHAAGVVISDKPLMEYVPLYRN--GDMITTQFPMGLLEDLGLIKM 526 Query: 572 DFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGL+TLT+++ +L+ + +G+ ++L I +D + Y +L+ TLG+FQLES GM Sbjct: 527 DFLGLRTLTVIRDALENIKHSQGMNINLDNIDLEDPKVYKMLSKGDTLGVFQLESKGMIA 586 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690 + +QP+ EDIIA +SLYRPGP+D I Y K E I +HP+++P+L T G ++ Sbjct: 587 FMRDLQPEHFEDIIAGISLYRPGPMDQIPRYIENKKSPEAITYLHPILEPILDVTYGCMV 646 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKK------------IKEEMDKQKERFISGASK 738 YQEQVMQI + ++G+++ +D++RRAM KK I E+D+ E I GA + Sbjct: 647 YQEQVMQIFRDVAGFTMGRSDLVRRAMSKKKIDVMNQEGEVFIHGEVDENGETVIDGAVR 706 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 G+ + +A I+ + FA Y FNKSHAAAYAVI+YQTAW+K +YP EF+AA M+ MD+ Sbjct: 707 RGVPENVAEQIYAEMKDFAKYAFNKSHAAAYAVIAYQTAWLKCYYPTEFMAALMSSVMDD 766 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-S 857 +K+ K+ +D R+ +I+++PP VN F V +N+I + L AIKG+G I+ A Sbjct: 767 EKKVSKYIEDCRKNDIKVLPPDVNVSYDKFSVKNNKICFGLGAIKGLGKNAIVSIVNARE 826 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 D F DFC +VD K LN+R++E L+ +GA D G +R QLL + + Q ++ Sbjct: 827 TDGAFKGFRDFCEKVDLKALNKRMVEGLIKSGAFDYTGSTRAQLLLGAERMVDQVQREKR 886 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 +R ++ + + L + R E+ VLG Y +GHPL+ Y+ L++ Sbjct: 887 DRLAGQISLLDFGGNSSLKEDFLPDVAPFTKEQRLALEKEVLGLYVTGHPLEKYENTLKE 946 Query: 978 MG------IKGYEE-SVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + YE+ + IR G + + ++ + + TR G + ++T + E Sbjct: 947 KTNLNSSMLDSYEDLRDSGIRDGGAVIIGGLIDDVKNQITRNGKLMAFMTLEDLYGRLEV 1006 Query: 1030 NFFP 1033 FP Sbjct: 1007 VVFP 1010 >gi|325204784|gb|ADZ00238.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240355] Length = 1144 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1035 (38%), Positives = 595/1035 (57%), Gaps = 42/1035 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F D + Sbjct: 234 PRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLF--PTPDGLS 291 Query: 305 KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +++ +L NK + V+L + +Y++RLDFELN+I +MKF GYFLIV DF Sbjct: 292 RDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDF 351 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFC Sbjct: 352 INWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFC 411 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L KLIP + Sbjct: 412 QANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEA 471 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P+SL A+ + + +E A+ D L+ +++KLE L R HA G++I +S Sbjct: 472 NKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDY 530 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------V 596 P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K + Sbjct: 531 SPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTTGDII 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+D Sbjct: 586 DVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRRA Sbjct: 646 NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQT Sbjct: 705 MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835 AW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D +I Sbjct: 765 AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ GA D Sbjct: 825 RYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R LL ++D A +K +F + + + L + + S + Sbjct: 885 EPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAI-EPVRLIDAPMWSESEKLAE 941 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + ++ +++RLA V + + ++G Sbjct: 942 EKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTAVRTMMGKRG- 996 Query: 1014 RIGWVTFSEPAKEYE 1028 +I +V+ + + + E Sbjct: 997 KIAFVSLEDLSGQVE 1011 >gi|254671593|emb|CBA09263.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha153] Length = 1144 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1035 (38%), Positives = 595/1035 (57%), Gaps = 42/1035 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F D + Sbjct: 234 PRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLF--PTPDGLS 291 Query: 305 KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +++ +L NK + V+L + +Y++RLDFELN+I +MKF GYFLIV DF Sbjct: 292 RDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDF 351 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFC Sbjct: 352 INWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFC 411 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L KLIP + Sbjct: 412 QANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEA 471 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P+SL A+ + + +E A+ D L+ +++KLE L R HA G++I +S Sbjct: 472 NKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDY 530 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------V 596 P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K + Sbjct: 531 SPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTTGDII 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+D Sbjct: 586 DVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRRA Sbjct: 646 NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQT Sbjct: 705 MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835 AW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D +I Sbjct: 765 AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKI 824 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ GA D Sbjct: 825 RYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R LL ++D A +K +F + + + L + + S + Sbjct: 885 EPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAI-EPVRLIDAPMWSESEKLAE 941 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + ++ +++RLA V + + ++G Sbjct: 942 EKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTAVRTMMGKRG- 996 Query: 1014 RIGWVTFSEPAKEYE 1028 +I +V+ + + + E Sbjct: 997 KIAFVSLEDLSGQVE 1011 >gi|268679272|ref|YP_003303703.1| DNA polymerase III subunit alpha [Sulfurospirillum deleyianum DSM 6946] gi|268617303|gb|ACZ11668.1| DNA polymerase III, alpha subunit [Sulfurospirillum deleyianum DSM 6946] Length = 1182 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1054 (37%), Positives = 620/1054 (58%), Gaps = 58/1054 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + HL +H+ YSLL+GA + + K+ A ++AITD N+F AL+F + GI+PI Sbjct: 6 YTHLHLHTEYSLLDGANKIGKLAKKLKAQGVGSVAITDHGNMFGALDFYKTMRKEGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 IG + I QD++ G + L GY+ L+ L S Y+ +G Sbjct: 66 IGIEAYIHNQDDI-----GDKTTKQRFHLCLFAKNEIGYKNLMYLSSMSYI--KGFYYYP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------QVAEKRLLTFKKLFG 179 RI L+E +EGLI + G ++ N+ + A++ L +K +FG Sbjct: 119 RINKQLLKE-HSEGLICSSACLQGEVNWHLNLNNKRNVQFGAKGYERAKEVALEYKAIFG 177 Query: 180 DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ + RH D+ + + ++++A + ++ATN++ +L +D EAH+ M +A + Sbjct: 178 DDFYLEIMRHGINDQMFIDDNILRIAKETGIKVIATNDTHYLEPDDAEAHEAFMCIAMNK 237 Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-I 296 +R R + + ++K+ ++ +F D+PE LENT EI +C+ +++ P P+F Sbjct: 238 EFDDPNRLRHSVHEFFVKSPEQIADLFVDIPEVLENTQEIVDKCNLEIKLGDPTPPKFKF 297 Query: 297 EKEC---DDIQKEEENEL-RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 KE + + E +++ +K GL+ RL +K ++Y+ RL+ E++VI MK Sbjct: 298 TKEYAAREGLSFESDDDFFAHKCREGLKERLKYVDASK---HEEYKARLEREISVICTMK 354 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GY LIV DFI+ AK +PVGPGRGS AGS+ AY+L ITD+DP+ ++LLFERFLNP+R Sbjct: 355 FPGYMLIVWDFIREAKSRGVPVGPGRGSAAGSLVAYSLFITDLDPMPYNLLFERFLNPER 414 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D+DFCQ RR E+I YV KYG VAQ+ITFG L AK +RDV R L +PY++ Sbjct: 415 ISMPDIDVDFCQSRRGEIIDYVVEKYGRYNVAQVITFGKLLAKGVIRDVARVLAIPYAEA 474 Query: 473 DRLCKLIPNDPAHPVSLQAIA-------------DDSRFREARLADPSVDRLLEISQKLE 519 D + KLIP++ ++L I + + RE DP + R+ + + LE Sbjct: 475 DAMAKLIPDELG--ITLNGIGVEGEEGFKAGAYQKEPKLRELIERDPRMQRVWKFALALE 532 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R++ HAAG+VI D L P+Y+ D VTQ+++ ++E LIKFDFLGLKTL Sbjct: 533 GLNRNSGMHAAGVVISDEELWHKTPLYQPSGEDHLVTQYSLNFLEDVDLIKFDFLGLKTL 592 Query: 580 TLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +L + R K +D + + +D + Y L+ + T+G+FQ+ESSGM+ E ++P+ Sbjct: 593 TVIDNALKLIKARYNKTIDFNALDLNDPKVYELIQSGDTIGLFQIESSGMQSLNERLKPN 652 Query: 639 CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIY 691 ED+IA+++LYRPGP+++ ++ + +RK+G++++ PL P+L+ T GVI+Y Sbjct: 653 TFEDLIAVLALYRPGPMESGMLDDFIDRKHGRKEVTYFFDEFTKPL-QPILEPTYGVIVY 711 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQI Q + G+SL E+D++RRAMGKK + M ++ E F GA K G+ + A+ +F Sbjct: 712 QEQVMQIVQSIGGFSLGESDLIRRAMGKKKIDYMKQKAEEFADGAVKQGLDRAHAIELFG 771 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+ KFA YGFNKSH+AAYA+I++QTA++K +YP EF+AA +T E DN +KI K+ + ++ Sbjct: 772 LIEKFAGYGFNKSHSAAYALITFQTAYLKCYYPQEFMAALLTSEQDNTDKIVKYIDEVKR 831 Query: 812 FNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866 I+++PPS+ ++F G I + + AIKGVG I+EA AD PF + Sbjct: 832 LGIKLLPPSIQHSLIEFSAITDSDGCEAILFGMGAIKGVGNAAISKILEARADAPFSDMS 891 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF SR+D K+N++VLESL+ +G+ D FGYSR LL+S+D I + + + + ++ Sbjct: 892 DFISRIDGSKVNKKVLESLIKSGSFDGFGYSRRALLESIDTIIEASGECSRAKKMAEYSL 951 Query: 927 FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 F + S + +E S +S E E+ +GFY SGHPLD ++ + +M E Sbjct: 952 FGDSEEMTSVAVKIEPISEFDSKRMLELEKETIGFYISGHPLDAFRAQIDEMNYMLSSEK 1011 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 G+ V S +K ++KG++ G V+ Sbjct: 1012 DQIEDGSKALFIGKVESITEKMSKKGNKFGVVSL 1045 >gi|257468959|ref|ZP_05633053.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|317063207|ref|ZP_07927692.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|313688883|gb|EFS25718.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] Length = 1141 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/980 (40%), Positives = 599/980 (61%), Gaps = 41/980 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSLL+G +++ LD+ AIAITD NLF LE +KA GI+P Sbjct: 4 NFVHLHLHTEYSLLDGVGKIDDYLDRAKVLGMQAIAITDHGNLFGVLELYKKAMKKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128 +IG + + M + F +VLL +GYQ L+++ S Y+ +G Sbjct: 64 VIGLEAYVS---EFSMLEKDGRIF----HLVLLAENNKGYQNLLKISSESYI--KGFYYK 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNL 186 RI +L+ +EG+I L+ G I R N S+ ++ + +FG D Y+ + Sbjct: 115 PRIDKEFLKN-HSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEV 173 Query: 187 QRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Q + +G E ++ LA H+L ++ATN++ +++E ++ D+L+ V VS + Sbjct: 174 QANGVKGQTALNE-KLYDLAQKHQLKMIATNDTHYVNEGEHTLQDILICVQTGAKVSDEK 232 Query: 245 RPRVTPDH-YLKNRSEMV-SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R+ D +LK+R +++ + + EA+ NTVEIA RC+ ++ P + C Sbjct: 233 RMRIETDELFLKSREQIIDGLGAKYLEAVNNTVEIAERCNVDIEFGKFKFPDYKIPSC-- 290 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 K E LR GL R QG +R+++EL+VI +M ++ YF++V D Sbjct: 291 -AKSIEEFLRKLVYFGLSKRYPQGLTVT------VLERVEYELSVIEKMGYAAYFVVVWD 343 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI +AK+N IP+GPGRGS AGS+ AYAL IT++DPL ++L+FERFLNP+R+SMPD DID Sbjct: 344 FIDYAKRNRIPIGPGRGSAAGSLVAYALRITELDPLSYNLIFERFLNPERISMPDIDIDI 403 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+RR EVI YV KYG ++VAQIITFG+++A+AA+RDVGR + S++D + KL+P + Sbjct: 404 CQERRQEVIEYVIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTSLSKIDSVAKLVPFN 463 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +L + + F+ L DP + ++++IS +LE RHAS HAAGIVI PL+ Sbjct: 464 ATIQQTLNNVEE---FKNMYLNDPEIQKVIDISARLENKVRHASVHAAGIVITKDPLTDT 520 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+Y D ++ + TQ+ MK +E GL+K DFLGL+ LT LQ+++D++ + G ++LS I Sbjct: 521 VPLYSDNKNKIVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRAIDYIKEDLGEDIELSEI 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660 P + + Y +L+ T G+FQLES G+R+ L ++PD EDIIAL++LYRPGP+ + +V Sbjct: 581 PLNSKKVYEMLSRGDTSGVFQLESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVD 640 Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + N KNG +I+ HP ++ LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGK Sbjct: 641 DFINGKNGISEIIYPHPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGK 700 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + M++ +E+F+ + +NG +K A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ Sbjct: 701 KNVQIMEENREKFVERSMENGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYF 760 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +Y + A+ MT EM +VE I + +DA+ N+++ P VN F+V I +SL Sbjct: 761 KAYYMKHYYASLMTSEMSHVEDIAFYMEDAKAHNMKLHLPDVNRASSKFRVDKEGIIFSL 820 Query: 840 AAIKGVGT-TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AAIK VG +A+ + E + + + + EDF R LN++ LESL+ AGALD +R Sbjct: 821 AAIKNVGEGVSAKILEECNENGDYKNFEDFVVRTRKHGLNKKALESLILAGALDSLPGNR 880 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENE 955 Q +S+D I YA K + N+F K G F+ + ++S+E R E Sbjct: 881 KQKFESVDKILDYATRKIKEDEIQQMNLFGEAKSSLGVFTLP-QVPEYSLEELLAR---E 936 Query: 956 QRVLGFYFSGHPLDVYKPIL 975 + LGFYFS HPLD Y+ ++ Sbjct: 937 KEYLGFYFSAHPLDNYRRLI 956 >gi|56707551|ref|YP_169447.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110670022|ref|YP_666579.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis FSC198] gi|254370074|ref|ZP_04986080.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis FSC033] gi|56604043|emb|CAG45035.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320355|emb|CAL08418.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis FSC198] gi|151568318|gb|EDN33972.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis FSC033] gi|282158705|gb|ADA78096.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis NE061598] Length = 1159 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1022 (39%), Positives = 606/1022 (59%), Gaps = 41/1022 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131 +L +D T F + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 SWL E+ E +I L GG G + +A A++ + ++FG Y+ Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170 Query: 192 YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247 Y+ Y E + ++ A + L VATN ++F+ +DY+ H++ + +T++ + + + Sbjct: 171 YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP + +KE Sbjct: 230 FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288 Query: 308 ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++L GL+ RL + A + + Y+ RL E+++I M F GYFLIV D Sbjct: 289 FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 346 FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP Sbjct: 406 CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ + E + AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 466 PGTTFKKILHEGETLYEEVQ-ADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + A+R +D+ Sbjct: 525 APVYCENKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 585 ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + +RK+ +++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMG Sbjct: 645 PTFIDRKHSRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK EEM+KQ++ F GA+K + I +A IF+ + FA YGFNKSHAAAYA+I+YQTA Sbjct: 705 KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836 W+K HYP E++AA M+ +M N +++ KF D + +I ++ P+VN D V I Sbjct: 765 WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMSITVLAPNVNKSVYDCIAVSKGTIL 824 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L AIKG+G + I+ E F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 825 LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952 +R S++ K A +V + +++F + LE+ VE +++ Sbjct: 885 KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010 NE++ LG YFSGH +D + E+ + GN++R +A+M+ ++KT+ Sbjct: 945 INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004 Query: 1011 KG 1012 G Sbjct: 1005 TG 1006 >gi|296313886|ref|ZP_06863827.1| DNA polymerase III, alpha subunit [Neisseria polysaccharea ATCC 43768] gi|296839514|gb|EFH23452.1| DNA polymerase III, alpha subunit [Neisseria polysaccharea ATCC 43768] Length = 1144 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/1046 (38%), Positives = 596/1046 (56%), Gaps = 64/1046 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPECPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKST 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N +I Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLVDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002 + + S + E+ V+GFY SGHP Y +R++ + ++ ++ +++RLA V Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++G +I +V+ + + + E Sbjct: 987 AVRTMMGKRG-KIAFVSLEDLSGQIE 1011 >gi|254804357|ref|YP_003082578.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha14] gi|254667899|emb|CBA04031.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha14] Length = 1144 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/1046 (38%), Positives = 597/1046 (57%), Gaps = 64/1046 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIIDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N +I Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PNMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002 + + S + E+ V+GFY SGHP Y +R++ + ++ ++ +++RLA V Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++G +I +V+ + + + E Sbjct: 987 AVRTMMGKRG-KIAFVSLEDLSGQVE 1011 >gi|255322503|ref|ZP_05363648.1| DNA polymerase III subunit alpha [Campylobacter showae RM3277] gi|255300411|gb|EET79683.1| DNA polymerase III subunit alpha [Campylobacter showae RM3277] Length = 1326 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1003 (38%), Positives = 598/1003 (59%), Gaps = 48/1003 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA + + + A AITD N+F A++F + GI+P+ Sbjct: 7 FTHLHLHTEYSLLDGANRIKELAKTLKKQGVKAAAITDHGNMFGAIDFYKTMKNEGIKPL 66 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I + L G + L+ GY+ L+ L S Y+ + R Sbjct: 67 IGIEAYIHNGEEL-----GDKSTKQRFHLCLIAKNEIGYKNLMYLSSMSYI-EGFYYYPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI-------DRAFFFNSS--QVAEKRLLTFKKLFGDR 181 I L+E +EG+I + G + +R F + + A++ L +K++FGD Sbjct: 121 INKKILKE-HSEGIICSSACLQGEVNWNLNQSERNLRFGAGGYEAAKEAALWYKEVFGDD 179 Query: 182 LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ + RH D+ R + ++++LA + ++ATN++ + ++ +AH+V M +A + ++ Sbjct: 180 FYLEIMRHGIGDQRRIDDEILRLAKELNIKVIATNDTHYTFKQRADAHEVFMCIAMNKLL 239 Query: 241 SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---- 295 +R R + + Y+K ++M +F+D+PEA+ NT EI +C +++ P F Sbjct: 240 DDPNRLRHSVHEFYVKTPAQMSELFADIPEAVTNTQEIVDKCDLSIKLGDATPPNFKFTL 299 Query: 296 ---IEKECDDIQKEEENELRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 E+ + ++ + N +V GLE RL ++YR RL E+ Sbjct: 300 EYAAERNLSLPEPDKRYSIPNDSVLFEHECRQGLEERLK---FVTAERHEEYRTRLQREI 356 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 ++I +M F GY +IV DFI AKK +PVGPGRGS AGS+ AY+L ITD+DPL ++LLFE Sbjct: 357 DIINKMNFPGYMMIVWDFINEAKKRGVPVGPGRGSAAGSLVAYSLKITDLDPLPYNLLFE 416 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPD D+DFCQ+RR E+I YV KYG VAQ+ITFG L AK +RDV R Sbjct: 417 RFLNPERVSMPDIDVDFCQNRRGEIIDYVIEKYGKFNVAQVITFGKLLAKGVIRDVARVC 476 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525 MPY++ D + KLIP++ + QA + + E ++ + +R+ + + LEGL R+A Sbjct: 477 DMPYAEADAMAKLIPDELGITLE-QAFEKEPKIGELIASNSNANRIWKFALDLEGLNRNA 535 Query: 526 STHAAGIVIGDRPLSQLVPMYR--DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+VI + L P++R + D VTQ+++K++E LIKFDFLGLKTLT++ Sbjct: 536 GMHAAGVVISNEELWNKTPLFRQPNAEEDHFVTQYSLKYLEDVDLIKFDFLGLKTLTVID 595 Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ + +R G ++ + +D +TY +++ TLG+FQ+ES GM++ M+PDC ED Sbjct: 596 NAVKLVKKRFGKEIIWEQVNKNDPKTYETISSGQTLGLFQIESEGMQKVGADMRPDCFED 655 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIA++SLYRPGP+D I + RK+G E I I P + P+L+ T GVI+YQEQVMQI Q + Sbjct: 656 IIAMISLYRPGPMDLIPDFIKRKHGLEPITYIFPELQPILEPTYGVIVYQEQVMQIVQTI 715 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 G+SL AD++RRAMGKKIKEEMD+ K +FI GA G+ A +FEL+ FA YGFN Sbjct: 716 GGFSLGGADLVRRAMGKKIKEEMDRLKGKFIEGAEAQGLDGKKADELFELILHFASYGFN 775 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSHAAAY +++QTA++KT+YP EF+AA +T E N +KI ++ + ++ +I I+PPSVN Sbjct: 776 KSHAAAYTYVTFQTAYLKTYYPAEFMAALITSEETNADKISRYIDECKRLDIAILPPSVN 835 Query: 823 TPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878 +F V G + I Y L AIKGVG +I+E A F ++DF SRVD+ K+N Sbjct: 836 KSAKEFSVVSEGGKDAIIYGLGAIKGVGGAAIENILEEQAKGEFKDIDDFVSRVDNFKVN 895 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 ++V ESL+ +G+ D FG +R +L +LDNI + + + N E++F ++ + K Sbjct: 896 KKVFESLIKSGSFDSFGLTRKMMLNNLDNIVEACKNAATIKKNAAESLFGDDESMATVKT 955 Query: 939 TLEKFSVE---NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +L + E + ++FE E +G Y SGHPLD Y+ + K+ Sbjct: 956 SLVRDDSELELKTKLKFELES--VGIYLSGHPLDEYREQISKI 996 >gi|325133602|gb|EGC56263.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M13399] gi|325143829|gb|EGC66145.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240013] gi|325206743|gb|ADZ02196.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M04-240196] Length = 1144 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1039 (38%), Positives = 590/1039 (56%), Gaps = 50/1039 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F D + Sbjct: 234 PRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLF--PTPDGLS 291 Query: 305 KEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +++ +L NK + V+L + +Y++RLDFELN+I +MKF GYFLIV DF Sbjct: 292 RDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDF 351 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFC Sbjct: 352 INWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFC 411 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L KLIP + Sbjct: 412 QANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEA 471 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 P+SL+ + + + D L+ +++KLE L R HA G++I +S Sbjct: 472 NKPLSLEKAMEAEPQIQELIEVEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYS 531 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VD 597 P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K +D Sbjct: 532 PVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTTGDIID 586 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+DN Sbjct: 587 VGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDN 646 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRRAM Sbjct: 647 IPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAM 705 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQTA Sbjct: 706 GKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTA 765 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIY 836 W+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D +I Sbjct: 766 WLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMKIR 825 Query: 837 YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ GA D Sbjct: 826 YALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIE 885 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENSS 949 +R LL ++D N K N A++ G F + + L + S Sbjct: 886 PNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDLPRWSES 936 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + E+ V+GFY SGHP Y +R++ + +++RLA V + + Sbjct: 937 EKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMG 993 Query: 1010 RKGSRIGWVTFSEPAKEYE 1028 ++G +I +V+ + + + E Sbjct: 994 KRG-KIAFVSLEDLSGQVE 1011 >gi|328676562|gb|AEB27432.1| DNA polymerase III alpha subunit [Francisella cf. novicida Fx1] Length = 1159 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1022 (39%), Positives = 604/1022 (59%), Gaps = 41/1022 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131 +L +D T F + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 SWL E+ E +I L GG G + +A A++ + ++FG Y+ Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170 Query: 192 YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247 Y+ Y E + ++ A + L VATN ++F+ +DY+ H++ + +T++ + + + Sbjct: 171 YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP ++ +KE Sbjct: 230 FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VDIPAGLTEKEY 288 Query: 308 ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++L GL+ RL + A + + Y+ R+ E+++I M F GYFLIV D Sbjct: 289 FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRVQREIDIICDMGFPGYFLIVED 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 346 FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP Sbjct: 406 CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + + + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 466 PGTTFK-KILHEGEPLYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----GVKVDL 598 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + + +D+ Sbjct: 525 APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINTKRPADQKPLDI 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 585 ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMG Sbjct: 645 PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK EEM+KQ++ F GA+K + I +A IF+ + FA YGFNKSHAAAYA+I+YQTA Sbjct: 705 KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836 W+K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 765 WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L AIKG+G + I+ E F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 825 LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952 +R S++ K A +V + +++F + LE+ VE +++ Sbjct: 885 KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010 NE++ LG YFSGH +D + E+ + GN++R +A+M+ ++KT+ Sbjct: 945 INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004 Query: 1011 KG 1012 G Sbjct: 1005 TG 1006 >gi|261401655|ref|ZP_05987780.1| DNA polymerase III, alpha subunit [Neisseria lactamica ATCC 23970] gi|269208234|gb|EEZ74689.1| DNA polymerase III, alpha subunit [Neisseria lactamica ATCC 23970] Length = 1144 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1045 (38%), Positives = 593/1045 (56%), Gaps = 62/1045 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + +AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 P+ + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PVGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L KL Sbjct: 407 DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+SL A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLSLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKST 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D +I Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PDMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLVDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + S + E+ V+GFY SGHP Y + ++ + +++RLA V + Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTA 987 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028 + ++G +I +V+ + + + E Sbjct: 988 VRTMMGKRG-KIAFVSLEDLSGQVE 1011 >gi|241759501|ref|ZP_04757605.1| DNA polymerase III, alpha subunit [Neisseria flavescens SK114] gi|241320283|gb|EER56616.1| DNA polymerase III, alpha subunit [Neisseria flavescens SK114] Length = 1144 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/1046 (38%), Positives = 596/1046 (56%), Gaps = 64/1046 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAVDVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTEAYVGKDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F + Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPNAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLVKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N +I Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVQLIDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002 + + S + E+ V+GFY SGHP Y +R++ + ++ +++RLA V Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVT 986 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++G +I +V+ + + + E Sbjct: 987 AVRTMMGKRG-KIAFVSLEDLSGQIE 1011 >gi|317969748|ref|ZP_07971138.1| DNA polymerase III subunit alpha [Synechococcus sp. CB0205] Length = 1179 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1069 (38%), Positives = 611/1069 (57%), Gaps = 66/1069 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++ + PAIA+TD ++ A+E + + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPAMVKRAEELGMPAIALTDHGVMYGAIELLKLCRGSSVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRMYLLD 123 IIG ++ + G P P +V+L A GY+ L++L S +L Sbjct: 62 IIGNEMYV---------INGSIDDPNPPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRG 112 Query: 124 QGKQSV--RICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + + R C+ E +EGLI+ T G I +A VA ++ +FGD Sbjct: 113 MRGRGIFSRACIDKPTLERHSEGLIIATACLGGEIPQAILRGRPDVARDVARWYQGVFGD 172 Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ +Q H DR ++ +++ +PLVATN++ +L+ D EAHD L+ V + Sbjct: 173 DFYLEIQDHGSPEDRIVNVEMAKISKELGIPLVATNDAHYLTSNDAEAHDALLCVLTGKL 232 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILP 293 V+ + R R T ++K+ EM+ +F+D + EA+ NT +A + + +P Sbjct: 233 VTDEKRLRYTGTEFIKSEQEMLGLFADHLEPEVVAEAVANTALVAEKVEDYDILGRYQMP 292 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 RF E + LR GL RL G+ A Y +RL FEL V+ +M F Sbjct: 293 RFPIPE----GHTPVSYLREVTEQGLRARLGLPE-GSGFEAT-YGERLAFELQVMEQMGF 346 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFL+V D+I++A+ N IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R Sbjct: 347 PTYFLVVWDYIRFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERK 406 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY D Sbjct: 407 SMPDIDTDFCIERRGEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDAD 466 Query: 474 RLCKLIPNDPAHPVSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 RL KLIP P L + I ++S FRE L DP+V R ++++ ++EG + HA Sbjct: 467 RLAKLIPVVRGKPAKLKEMIGEESPAPEFREKYLGDPAVKRWVDMAMRIEGTNKTFGVHA 526 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI PL ++VP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K++D + Sbjct: 527 AGVVIAADPLDEVVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTVDLV 585 Query: 590 AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q GV +D +P DD T+ LL GIFQLESSGMRQ + ++P +EDI ++++ Sbjct: 586 KQSSGVSIDPDALPLDDEGTFGLLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILA 645 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+D ++ + NRK+G+E I H ++P+L+ET G+++YQEQ+M+IAQ L+GYS Sbjct: 646 LYRPGPLDAGLIPKFINRKHGREAIDFAHAKLEPILQETYGIMVYQEQIMKIAQDLAGYS 705 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L EAD+LRRAMGKK EM K ++ F+ GAS+ G+ IA +F+ + FA+Y FNKSH+ Sbjct: 706 LGEADLLRRAMGKKKVSEMQKHRDIFVKGASERGVDAKIADELFDQMVLFAEYCFNKSHS 765 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AY ++YQTA++K HYPV ++AA +T+ + +K++++ + I++MPP VN + Sbjct: 766 TAYGAVTYQTAYLKAHYPVAYMAALLTVNAGSTDKVQRYISNCNAMGIEVMPPDVNASGI 825 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 DF +RI + L+A++ +G R ++EA S+D PF SL D C R+ LNRR LE+L Sbjct: 826 DFTPVGDRILFGLSAVRNLGEGAIRALLEARSSDGPFQSLADLCDRIPGTTLNRRSLEAL 885 Query: 886 VFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----------AHE-KG 932 + GA+D +R QL+ LD I +A ++R + N+F A E +G Sbjct: 886 IHCGAMDALEPEANRAQLMADLDLIVDWASSRARDRASGQGNLFDLFAAPASGDAEETQG 945 Query: 933 TFSDKITLEKFS-----VENSSVRFENEQRVLGFYFSGHPL-DVYKPI--LRKMGIKGYE 984 SD T K + +R E E ++GFY S HPL + +P+ L +G+ G E Sbjct: 946 GGSDLSTAPKAAPVKDYPPTEKLRLEKE--LVGFYLSDHPLKQLTRPVQLLSPVGLGGLE 1003 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E R + + MV + TRKG R+ + + + EA FP Sbjct: 1004 EQADKAR---VSVVGMVSGLRPVTTRKGDRMAVLQLEDLSGSCEAVVFP 1049 >gi|257453752|ref|ZP_05619033.1| DNA polymerase III subunit alpha [Enhydrobacter aerosaccus SK60] gi|257448844|gb|EEV23806.1| DNA polymerase III subunit alpha [Enhydrobacter aerosaccus SK60] Length = 1189 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1038 (38%), Positives = 610/1038 (58%), Gaps = 78/1038 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVH +H+ +S+ + + + ++ AD Q A+AI+D +NL++ ++F + AGI+P Sbjct: 2 AFVHFGIHTEFSITDSIVRIKALVKAAKADNQLALAISDLSNLYATVKFYKACLDAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ + N T + LL S GY+ L +VS+ ++ Q Sbjct: 62 IIGSEV--------WLENDSTT-------VTLLASNQVGYKNLTNIVSKGFVDGQVMGKP 106 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I W+ E +EG+I+L S + +A + A+ L ++ F DR+Y ++R Sbjct: 107 IIQRDWIFE-RSEGVIVLFTEKSD-VGQAMLSAHPEKADSLLQQWQTTFADRVYFAIKRT 164 Query: 190 R--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + DR+ E Q ++++ ++P++A N+ FL+E+D+EAH+ + +A+S V++ +RPR Sbjct: 165 QRANEDRFIE-QAIRMSNAFDVPIIAHNDVRFLTEDDFEAHEARVCIANSQVLADPNRPR 223 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P+ YLK + +M ++FSD+P ++NT+++A+RC+ I+ + LP F E D I Sbjct: 224 DYSPEQYLKTQDKMTALFSDMPAVIDNTLDLAKRCNVIIHMGHHDLPEFPIPEGDTI--- 280 Query: 307 EENELRNKAVAGLEVRLAQ-GAIAK-----GYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E R A GLE RL + I K + Y +RL+FEL I M F GYFLIV Sbjct: 281 -ETFFRRTAQEGLEKRLEKLYPIEKRDDSWAEKRKPYDERLEFELTTILNMGFPGYFLIV 339 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI+W+K N++PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+ Sbjct: 340 MDFIRWSKANDVPVGPGRGSGAGSLVAYSLNITDLDPLEYDLLFERFLNPERVSMPDFDV 399 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RD VI YV KYG E V+QIITFG++ AKA +RDV R Y D++ KLIP Sbjct: 400 DFCIEGRDRVIDYVAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKISKLIP 459 Query: 481 NDPAHPVSL-QAIADDSRFREARLADP------SVDRLLEISQKLEGLYRHASTHAAGIV 533 P +SL A+ + + ++ L +P + + E++ +LEG+ R HA G++ Sbjct: 460 KTPG--ISLADAVEAEPQLKDL-LNNPDNMDYEDANEIWEMAVRLEGITRGVGKHAGGVL 516 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I ++ +Y D PV+QF+ +E GL+KFDFLGL+ LT++ ++ + R Sbjct: 517 IAPTKITDYSAIYCDEEGH-PVSQFDKDDVEAVGLVKFDFLGLRNLTVINAAVKNINARR 575 Query: 594 VK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 K +DL +P DD TY LL T +FQLES+GM++ L ++P IED+IA+ + Sbjct: 576 AKEQQPPLDLETLPLDDKPTYSLLQDAHTTAVFQLESTGMKKYLAKLKPTNIEDVIAMCA 635 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+D +V Y +RK+G+E+++ H ++P+L+ T GVI+YQEQVMQI+Q ++GYS Sbjct: 636 LYRPGPLDAGMVDMYIDRKHGREEVIYDHDRLEPILENTYGVIVYQEQVMQISQAMAGYS 695 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F+ GA GI +A +F+L+ KFA YGFNKSH+ Sbjct: 696 LGGADMLRRAMGKKKPEEMAKQRSIFVEGAIGQGIDDKLAGGVFDLMEKFAGYGFNKSHS 755 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPC 825 AAY V++YQTA++K +YP EF+AA +T +M+N + + F D R+ F +++ PSVN Sbjct: 756 AAYGVLAYQTAYLKHYYPAEFMAAVITSDMNNTDGVVFFINDCRENFGLKVENPSVNHSN 815 Query: 826 VDF-KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883 F + I Y L IKGVG I+EA +A F L DFC RVD++K+N+R LE Sbjct: 816 WAFVPINPTTIVYGLGGIKGVGEGAVESIVEARNAGGEFTDLYDFCRRVDTRKVNKRTLE 875 Query: 884 SLVFAGALDCFG-------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 +LV AG D F + R LL L K Q E+ R+N + Sbjct: 876 ALVKAGCFDSFAPKLRPDLPADEAYHIRGALLAEL---PKAVQAAEQQRSNDSLGMI--- 929 Query: 931 KGTFSD--KIT----LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 FSD ++T L + V + R + E+ LG Y +GHP+D Y+ L++ K Sbjct: 930 -DLFSDIQEVTAPPPLPREPVWTDAERLKGEKDTLGLYLTGHPIDSYRDELKRYTPKTLG 988 Query: 985 ESVATIRGNNIRLAAMVV 1002 + T G + A +++ Sbjct: 989 DLSETSYGETVFFAGLIL 1006 >gi|269792442|ref|YP_003317346.1| DNA polymerase III, alpha subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100077|gb|ACZ19064.1| DNA polymerase III, alpha subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 1132 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1043 (38%), Positives = 622/1043 (59%), Gaps = 48/1043 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VHS YSLL+GA+ ++D +A+ A+AITD ++ EF +K A GI Sbjct: 2 SVEFVHLHVHSEYSLLDGAIRCGELVDTVASMGMGAVAITDHGVMYGCEEFYEKCVAKGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC++ +D +G+ +VL GY+ LI+LVS + D Sbjct: 62 KPIIGCEVYVDPNGMDSRDGKGRNN-----HLVLWAEDQVGYKNLIKLVS-IANTDGFYY 115 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186 R+ L + ++G+I + +G I + A R ++ +FG+ ++ + Sbjct: 116 KPRVDHRVLSQ-HSKGIIASSACLAGEIPQLLMDGDFDGAVSRANLYRDIFGEGNFFIEI 174 Query: 187 QRHRGYDRYRE-----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y++ E +++++LA LPL+ATN++ +L ED HDVL+ V ++ V Sbjct: 175 M----YNQLPEQAMANAELIRLAKRCSLPLIATNDAHYLRREDASWHDVLLCVQTNSTVD 230 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 DR R + D YL+ EM S+ ++PEAL NT+ +A RC+ LQ+ +LP F E Sbjct: 231 TPDRYRFGSDDFYLRTPEEMWSLLGGEVPEALRNTLLVAERCNVELQLGHYMLPEFPLPE 290 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + ++ L A GL R+ + Q+YR RL++EL VI +M F GYF I Sbjct: 291 GETL----DSHLEKMAREGLRARVGEPI------PQEYRDRLEYELGVIKQMGFPGYFCI 340 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VAD I AK IP+GPGRGS AGS+ A+ L IT++DP+++ LLFERFLNP+R+SMPD D Sbjct: 341 VADIITAAKSRGIPIGPGRGSAAGSLVAWCLGITELDPIKYKLLFERFLNPERISMPDID 400 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 D RRDEV+ Y+ KYG +RV+QIITF +++KAA+RDVGRAL MPY +VDR+ KL+ Sbjct: 401 TDVSDKRRDEVLAYIVEKYGIDRVSQIITFDRMKSKAAIRDVGRALAMPYPEVDRVAKLV 460 Query: 480 PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P+ SL +A+ +E +DP V RL++ + +EG+ RH S HAAG+VI P Sbjct: 461 PDGVK---SLKEALEKSPDLKEVHSSDPKVRRLVDTASHIEGIARHCSQHAAGVVITPVP 517 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVD 597 L ++VP+ R + + VTQ++M+ +E GL+K DFLGL+TL++++ +L + A RG+K+D Sbjct: 518 LVEMVPV-RKIGENQVVTQYSMEPLEHLGLVKMDFLGLRTLSVIEGALRNVEANRGLKID 576 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L IP DD +T+ +L TLG+FQLESSGM+ L ++PDC ED+IA+++LYRPGP+ + Sbjct: 577 LRAIPLDDPKTFDMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGS 636 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V Y RK+G+ + HP ++ LKET GVI+YQEQVMQ A L+GY+L EAD+LRR Sbjct: 637 GMVDDYIERKHGRSPVTYPHPCLEEALKETYGVILYQEQVMQCAAELAGYTLGEADLLRR 696 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK + M+KQ+ +F+ GA G+ +A +IF + KFA+YGFNKSH+AAYA+ISYQ Sbjct: 697 AMGKKKADVMEKQRSKFVEGAKARGVEPKMAEDIFNSIEKFAEYGFNKSHSAAYALISYQ 756 Query: 776 TAWMKTHYPVEFLAASM-TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TA++K HY EFLA+ + ++ ++ + ++ ++ R ++PP +N DF Sbjct: 757 TAYLKAHYGPEFLASYLSSIVGSRMDILGRYIKEVRNLGYSVLPPDINESQSDFVAVGEV 816 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 I L+A+ VG + I+ A ++ PF S DF RVD + +NR V+E+L+ AGA D Sbjct: 817 IRLGLSAVAKVGDSAVDAILRARSEGPFRSFWDFLCRVDLRTVNRGVIENLIKAGAFDVL 876 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RF 952 +R LL +L+ + + AQ + +K ++F G ++ + V++ + R Sbjct: 877 CPNRRMLLDNLEGLLEMAQ--RRCDPSKQVSLF---DGDEEEEEEPKMDVVDDVDIHQRL 931 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR--LAAMVVSKQQKKTR 1010 E E+ VLG Y SGHP + + L + + + + R +N+ A ++ +++ T+ Sbjct: 932 EWEREVLGLYISGHPFEQVEGELAPFLVCKISD-LRSWRSSNVAPVTAGLLAGIRERYTK 990 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 +G +G + + + EA FP Sbjct: 991 RGDPMGILEMEDGDDKVEAVCFP 1013 >gi|187931355|ref|YP_001891339.1| DNA polymerase III subunit alpha [Francisella tularensis subsp. mediasiatica FSC147] gi|187712264|gb|ACD30561.1| DNA polymerase III subunit alpha [Francisella tularensis subsp. mediasiatica FSC147] Length = 1159 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1022 (39%), Positives = 603/1022 (59%), Gaps = 41/1022 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131 +L +D T F + +VLL +GYQ ++ LVS+ Y D+ I Sbjct: 64 VELKVD------------TEF-GICDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 SWL E+ E +I L GG G + +A A++ + ++FG Y+ Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170 Query: 192 YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247 Y+ Y E + ++ A + L VATN ++F+ +DY+ H++ + +T++ + + + Sbjct: 171 YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP + +KE Sbjct: 230 FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288 Query: 308 ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++L GL+ RL + A + + Y+ RL E+++I M F GYFLIV D Sbjct: 289 FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K+N+I VGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 346 FIRWSKENDISVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP Sbjct: 406 CIQSRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + + + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 466 PGTTFK-KILHEGEPLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + A+R +D+ Sbjct: 525 APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 585 ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMG Sbjct: 645 PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK EEM+KQ++ F GA+K + I +A IF+ + FA YGFNKSHAAAYA+I+YQTA Sbjct: 705 KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836 W+K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 765 WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L AIKG+G + I+ E F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 825 LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952 +R S++ K A +V + +++F + LE+ VE +++ Sbjct: 885 KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010 NE++ LG YFSGH +D + E+ + GN++R +A+M+ ++KT+ Sbjct: 945 INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004 Query: 1011 KG 1012 G Sbjct: 1005 TG 1006 >gi|329908024|ref|ZP_08274797.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327546808|gb|EGF31739.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 1177 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1025 (40%), Positives = 615/1025 (60%), Gaps = 36/1025 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP F HL++HS YS+++G + +++++D AAD QP++AITD NLF ++F + A GI Sbjct: 30 SPQFTHLRLHSEYSIVDGLIRIDDVVDAAAADSQPSLAITDLANLFGMVKFYKAARKKGI 89 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC ++ +TN P+ ++LL A GY +L EL+S+ +L + + Sbjct: 90 KPIIGC--------DVWITNDDDRDKPS--RLLLLAKNAAGYLQLCELISQAWLSNLHRG 139 Query: 128 SVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL+++ GLI L G G + A + AE+ + ++F Y+ + Sbjct: 140 RAEIRTEWLEKLSPANGLIALAGAHFGDVGIAIENGNLPAAERNAQRWSRIFPGHFYIEI 199 Query: 187 QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR ++ + Q+V LA +LP+VAT+ FL++E++ AH+ ++ +++ R Sbjct: 200 QRAGQPNQEAQVRQLVALAARLQLPVVATHPIQFLTKEEFIAHEARTCISEGEMLANSRR 259 Query: 246 PRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R D ++EM +F+DLP AL+N+ EIA+RC+ LQ+ P LP F E I Sbjct: 260 VRRFNDRQCFTTQAEMAGLFADLPAALQNSNEIAKRCNLTLQLGKPRLPDFPTPEGMTIG 319 Query: 305 KEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L +A +GLE RL Q + Q Y RLDFE N I +M F GYFLIVA Sbjct: 320 ----DFLVAEARSGLERRLLQLYPDETKREAERQRYADRLDFETNTIIKMGFPGYFLIVA 375 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQWAK N +PVGPGRGSGAGS+ AY+L+ITD+DPL ++LLFERFLNP+R+SMPDFDID Sbjct: 376 DFIQWAKNNGVPVGPGRGSGAGSLVAYSLSITDLDPLEYNLLFERFLNPERVSMPDFDID 435 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQ+ RD VI+YV+++YG E V+QI TFG++ AK A+RDVGR L M Y+ D + KLIP Sbjct: 436 FCQEGRDRVIQYVKDRYGKEAVSQIATFGTMAAKGAIRDVGRVLDMGYNFCDGISKLIPF 495 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P V++ AI ++ E + + V +LL+++Q++EG+ R+ HA G+VI L+ Sbjct: 496 KPGKQVTIADAILEEPLLAERQENEDEVRQLLDLAQQVEGIARNIGMHAGGVVIAPGKLT 555 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ ++ + D S Sbjct: 556 DFCPLYTQGGDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAVRYIKRLDPAMADFS 615 Query: 600 L--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L +P +D +Y LLT T+ +FQLES GM+ L+ +PD EDIIALV+LYRPGP+D Sbjct: 616 LEKLPLNDKASYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDL 675 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I + RK+G E+ P + +L ET G+++YQEQVMQ+AQ++ GYSL AD+LRRAM Sbjct: 676 IPDFCRRKHG-ERFDYPDPRTEGILSETYGIMVYQEQVMQMAQVVGGYSLGGADLLRRAM 734 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EEM + ++ F GA+K+G+S+ A IF+L+ KFA YGFNKSHAAAYA+++Y TA Sbjct: 735 GKKKAEEMAEHRQIFRDGAAKDGLSEAKADEIFDLMEKFAGYGFNKSHAAAYALLAYHTA 794 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVN------TPCVDFKV 830 ++K H+P F+AA+++L MD+ EKI+ +D + ++PP +N TP + Sbjct: 795 YLKAHHPAAFMAANLSLAMDDTEKIRILVEDVIDVCAMTLLPPDINQSDYRFTPVGEPGK 854 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 +I Y L A+KG G I+ A A PF L DF RVD +++NRR ++SL+ AGA Sbjct: 855 RAKQIRYGLGAVKGSGQGAIEAIVAARASGPFTDLFDFAKRVDKRQVNRRTVDSLIRAGA 914 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 DCF R LL S+ + A+ E + ++F + + K + Sbjct: 915 FDCFEVDRAVLLASVALALEAAEQHEA--SINQVSLFGGDDSDLDTQPEYLKVAPWTDKQ 972 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 R E+ LGFY SGH + Y +R+ + S+ R + +A ++VS + + T+ Sbjct: 973 RLTEEKTALGFYLSGHLFNSYAEEVRRFA-RTKLSSLEPSRDPRM-IAGIIVSLRVQMTQ 1030 Query: 1011 KGSRI 1015 +G + Sbjct: 1031 RGKMV 1035 >gi|121634255|ref|YP_974500.1| DNA polymerase III, alpha subunit [Neisseria meningitidis FAM18] gi|120865961|emb|CAM09698.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis FAM18] gi|325197670|gb|ADY93126.1| DNA polymerase III, alpha subunit [Neisseria meningitidis G2136] Length = 1144 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1046 (38%), Positives = 598/1046 (57%), Gaps = 64/1046 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + +AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 P+ + I D PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PVGAADVWIGNPD------APDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIIDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N +I Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PNMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002 + + S + E+ V+GFY SGHP Y +R++ + ++ ++ +++RLA V Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++G +I +V+ + + + E Sbjct: 987 AVRTMMGKRG-KIAFVSLEDLSGQVE 1011 >gi|50085210|ref|YP_046720.1| DNA polymerase III alpha [Acinetobacter sp. ADP1] gi|49531186|emb|CAG68898.1| DNA polymerase III, alpha chain [Acinetobacter sp. ADP1] Length = 1187 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1014 (38%), Positives = 594/1014 (58%), Gaps = 50/1014 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ D PA+A+TD +NL +A++F GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ ++ I LL T +G++ L E+VSR ++ +G+Q Sbjct: 63 LGSVVRLNDPEH---------------RITLLAMTNDGWKGLTEIVSRGHI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E + +++L G + + ++ Q AE L +++ FG+R+Y+ L R Sbjct: 106 PCVQKEWILEQHQDIIVLL--GQHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTR 163 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + + V+LA + + +VA N+ F+ +D++AH+ + +A V++ RPR Sbjct: 164 TQRAGEEDYMVEAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPR 223 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------IEKE 299 + + + Y K SEM +FSD+P A+ENT IA+RC+ LQ+ LP + I+ Sbjct: 224 IYSSEQYFKTASEMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTY 283 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + KE E N + +E R + + Y +R+++E+ +I +M F GYFLI Sbjct: 284 FEHLSKEGLEERLNH-LYPIETRDQDWPEIR----KPYDERIEYEVGIILKMGFPGYFLI 338 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD Sbjct: 339 VMDFIQWAKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFD 398 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K++ Sbjct: 399 VDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMV 458 Query: 480 PNDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVI 534 P P QAI + + ++ ++P D + E++ KLEG+ R+ HA G+VI Sbjct: 459 PTKPLGVDLKQAIEMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVI 518 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-- 592 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + +R Sbjct: 519 APGKITDYSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQ 578 Query: 593 -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 + +D++ +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYR Sbjct: 579 SEIPLDIANVPLDDKDAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYR 638 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D I + +R +G E +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD Sbjct: 639 PGPMDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGAD 697 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ++ FI GA++ I + A +IF+ + KFA YGFNKSHAAAYA+ Sbjct: 698 LLRRAMGKKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYAL 757 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++Y TAW+K HYP EF+AA ++ EM N + I D R ++++PPSVN F Sbjct: 758 VAYHTAWLKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHAS 817 Query: 832 DNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D R I Y L AIKGVG + ++++ + P+ L DFC R+D KK+N+R LE+L+ AG Sbjct: 818 DERTIVYGLGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAG 877 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENS 948 ALDC R L+ L + A+ +NR ++F E+ ++ +S E Sbjct: 878 ALDCLQIERSSLMAQLPEAVQAAEQARQNRETGIMDLFGEVEEVQRKPAKPVKPWSDE-- 935 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 VR + E+ LG Y +GHP+DVY+P L+ E T RG A +V+ Sbjct: 936 -VRLKGEKDTLGLYLTGHPIDVYRPELKSFIPAKLNEVTPTRRGVTTVFAGLVL 988 >gi|255065760|ref|ZP_05317615.1| DNA polymerase III, alpha subunit [Neisseria sicca ATCC 29256] gi|255050078|gb|EET45542.1| DNA polymerase III, alpha subunit [Neisseria sicca ATCC 29256] Length = 1144 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1049 (38%), Positives = 597/1049 (56%), Gaps = 70/1049 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + +AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 P+ + I N PF +L++ GY RL EL++ Y+ ++ Sbjct: 64 PVGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKERNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P++ D+L KL Sbjct: 407 DVDFCQSNRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKL 466 Query: 479 IPNDPAHPVSLQAIADDSRFREARLAD----PSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP + P+ L DD+ E ++ + D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGL----DDAMKAEPQIQELIEVEEADELITLAKKLEDLTRGLGMHAGGVLI 522 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ + Sbjct: 523 APGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNI 577 Query: 595 K------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 K VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VS Sbjct: 578 KNTTGDIVDVGKIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVS 637 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL Sbjct: 638 LYRPGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLG 696 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAA Sbjct: 697 GADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAA 756 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 757 YALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRF 816 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 N +I Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ Sbjct: 817 TPYPNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALI 876 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITL 940 GA D +R LL ++D N K N A++ G F + + L Sbjct: 877 RGGAFDSIEPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVQL 927 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAA 999 + + S + E+ V+GFY SGHP Y +R++ + ++ +++RLA Sbjct: 928 IDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAG 983 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 V + + ++G +I +V+ + + + E Sbjct: 984 FVTAVRTMMGKRG-KIAFVSLEDLSGQIE 1011 >gi|225076963|ref|ZP_03720162.1| hypothetical protein NEIFLAOT_02015 [Neisseria flavescens NRL30031/H210] gi|224951716|gb|EEG32925.1| hypothetical protein NEIFLAOT_02015 [Neisseria flavescens NRL30031/H210] Length = 1144 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1041 (38%), Positives = 591/1041 (56%), Gaps = 54/1041 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 P TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PCDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAVKMPEYQKRLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + D + G + Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDII 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+D Sbjct: 586 DVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMD 645 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRRA Sbjct: 646 NIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRA 704 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQT Sbjct: 705 MGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQT 764 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RI 835 AW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N +I Sbjct: 765 AWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYCFTPYPNMKI 824 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ GA D Sbjct: 825 RYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSI 884 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENS 948 +R LL ++D N K N A++ G F + + L + + Sbjct: 885 EPNRAMLLANID-------LAMNNADQKAAN--ANQGGLFDMMEDAIEPVRLVDTPMWSE 935 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQK 1007 S + E+ V+GFY SGHP Y +R++ + ++ +++RLA V + + Sbjct: 936 SEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTAVRTM 991 Query: 1008 KTRKGSRIGWVTFSEPAKEYE 1028 ++G +I +V+ + + + E Sbjct: 992 MGKRG-KIAFVSLEDLSGQIE 1011 >gi|317132302|ref|YP_004091616.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3] gi|315470281|gb|ADU26885.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3] Length = 1174 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1051 (38%), Positives = 604/1051 (57%), Gaps = 49/1051 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +HS YSLL+GA + +I + Q A AITD ++ ++F + A AG++P Sbjct: 3 GFVHLHLHSEYSLLDGACRIGDIPARAKELGQAAAAITDHGVMYGVMDFYKAARKAGVKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IIGC++ + T K P +VLL +GY+ LI LVS+ ++ D Sbjct: 63 IIGCEVYTAAR-----TRHDKQYHPDASHGHLVLLCENMQGYRNLIRLVSQAFI-DGFYG 116 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ L + EGLI L+ SG + + + A ++ + LFG D Y+ L Sbjct: 117 KPRVDWDLLTQY-HEGLIALSACLSGEVPKLLLAGNEAGARAKVEAYAALFGEDHFYLEL 175 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ R + ++++A LPLVATN++ +L +ED +L+ + + V + Sbjct: 176 QDHGMPEQQRVNAGLLEIARVSGLPLVATNDAHYLRKEDAYLQKMLLCIQTNRTVDEPGV 235 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 T + Y+K+ EM ++F +PEA +NTV IA+RC+ ILP F E Q Sbjct: 236 GFPTDEFYMKSEEEMRALFPQVPEACDNTVAIAKRCNVEFTFGKTILPHF---EVPGGQ- 291 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFI 364 E LR A GL R G D ++RLD+EL+VI RM + Y+LIV DFI Sbjct: 292 EHGAYLRGMAERGLADRY-------GPQPDDTVKERLDYELDVITRMGYVDYYLIVHDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 + AK+ IPVGPGRGSGAGS+ AY + IT IDP+R+ LLFERFLNP+R+SMPDFDIDFC Sbjct: 345 RHAKEAGIPVGPGRGSGAGSLVAYCVGITGIDPMRYHLLFERFLNPERISMPDFDIDFCY 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV KYG + VAQIITFG++ A+AA+RDVGRA+ +PY++VDR K++P + Sbjct: 405 ERRQEVIDYVVRKYGSDHVAQIITFGTMAARAAIRDVGRAMGVPYAEVDRTAKMVPAELG 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 ++ +A+ R AD +V RLL+ ++ LEG+ RHASTHAAG+VI P+ VP Sbjct: 465 MTIA-KALEHSEDLRTRYDADETVRRLLDTAKGLEGMPRHASTHAAGVVITRDPVDSYVP 523 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602 + ++ S VTQF M +E+ GL+K DFLGL+TLT+++ + + + ++ V D S+ I Sbjct: 524 LQKNDES--IVTQFTMTTLEELGLLKMDFLGLRTLTVIRYAENRIREQYVP-DFSIEQIA 580 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DH Y +L + T G+FQ ES GMR + + P+ +ED+IA++SL+RPGP+++I Y Sbjct: 581 LNDHAVYDMLGSGNTEGVFQFESPGMRHTIMELGPEHMEDLIAVISLFRPGPMESIPRYI 640 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 ++ EK+ HPL+ +L T G I+YQEQVM+I + L GYS AD++RRAM KK Sbjct: 641 ENRHHPEKVAYRHPLLKDILDVTYGCIVYQEQVMEIVRKLGGYSYGRADLVRRAMAKKKA 700 Query: 723 EEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 M ++++ FI GA +NG+ ++ A IF+ ++ FA Y FNKSHAAAYA Sbjct: 701 AVMQQERDHFIHGLRREDGTFECVGAVRNGVDESTANAIFDEMSSFASYAFNKSHAAAYA 760 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTA++K HYP E+ AA +T ++N K+ ++ + + +I I+PP VN F V Sbjct: 761 LVSYQTAYLKCHYPKEYFAALLTSVLENSAKVSEYINECVRLHIGILPPDVNESMNGFTV 820 Query: 831 GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N I + L A+K +G R ++ E + + PF S DF R LNRR+LESL+ G Sbjct: 821 SGNNIRFGLDAVKNLGRGFIRSLVRERAENGPFASFRDFVRRALPYDLNRRMLESLIKCG 880 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D Y R QL+ + + + KN + ++F + L+ Sbjct: 881 AFDSLHYKRRQLMLGYEALLAQEETTRKNNLSGQVSLFGTPAAPTDKQENLKDAEEFAPR 940 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG------YEESVAT-IRGNNIRLAAMVV 1002 R E+ VLGFY +GHP++ Y+ +R++ + +EE ++ G ++ LA +V Sbjct: 941 ERLAYEKEVLGFYLTGHPVERYRAAIRRLKLPSVGTILEHEEHISNDADGTSVSLAGIVQ 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 SKQ K T+ + + T + + E FP Sbjct: 1001 SKQTKITKNNETMAFCTLDDGSGTIELIVFP 1031 >gi|82523671|emb|CAI78453.1| DNA polymerase III, alpha subunit [uncultured candidate division WS3 bacterium] Length = 1160 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1034 (38%), Positives = 606/1034 (58%), Gaps = 49/1034 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS YSLL+GA ++ ++ + + PA+AITD ++F A+EF +A GI+PI Sbjct: 6 FVHLHNHSQYSLLDGACRIDRMVQRALEFRMPALAITDHGSMFGAIEFYSEAREHGIKPI 65 Query: 71 IGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IG + + + K +G + ++LL+ AEGY+ L++L S Y+ D Sbjct: 66 IGMEAYVTPGSHAEKPAGKGMESYS---HLLLLIRNAEGYRNLMKLSSASYV-DGFYYKP 121 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L++ G +GL+ T G + + A + ++ ++FGD +Y+ + Sbjct: 122 RVDKELLRKYG-DGLLACTACLKGEPAQHVLAGNEDAARESIIELVEIFGDGHVYLEVHN 180 Query: 189 HRGYDRYRESQVVQLAYTH-----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 H E V++ AY +PLVA N+ ++ E AHDVL+ + + + Sbjct: 181 HG----MPEEAVIRQAYVRLGRELGVPLVAANDCHYVRREQAAAHDVLLCIQTGREIDEP 236 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKE 299 +R R+ D Y+K+ EM +F D P A ENT+E+A +C+ L VH P P I + Sbjct: 237 NRMRMPNDEFYMKSPEEMRELFLDCPGAYENTIEVAEKCNLQLDFDHVHMPEFP--IPQG 294 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D E R GLE R + R EL++I +M F+GYFLI Sbjct: 295 YTDAAAHLEALTRE----GLEERYET-------VTPEVEARAALELSMIGQMGFAGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI A++ IPVGPGRGS A S+ +YAL IT++DPL F L+FERFLNP R SMPDFD Sbjct: 344 VHDFIHEARRRGIPVGPGRGSAAASIVSYALGITELDPLEFGLVFERFLNPARKSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC +RR+E+I YV KYG E VAQIITFG++QA+AA+RDVGR L+ PYS+VDR+ K++ Sbjct: 404 IDFCYERRNEIIEYVTEKYGRESVAQIITFGTMQARAAIRDVGRVLKFPYSEVDRVAKMV 463 Query: 480 PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P + ++L +A+A + R +D +LL+ + LEGL RHAS HAAG++I Sbjct: 464 PRELN--ITLEEALAKTPELKALRDSDERYAKLLDYAGDLEGLARHASVHAAGVIIAPGR 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 + P+YR + ++ TQ+ M + + GL+KFDFLGL+TLT++ +L + + RG+ + Sbjct: 522 IDDWAPLYRSNKGEI-TTQYPMNSLARIGLLKFDFLGLRTLTVIHDALAMIRENRGIDLA 580 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 IP DD ETY LL T T+GIFQ+ESSGMR L ++P+ +ED+ A+ +L+RPGP+ + Sbjct: 581 PDRIPLDDPETYELLGTGHTVGIFQVESSGMRDLLRKVRPERLEDMTAVNALFRPGPLGS 640 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V Y RK+G++K+ IHP + P+L+ET GV+ YQEQVMQI+ L+G+S+S+ADVL Sbjct: 641 GMVDDYVKRKHGRQKVSYIHPKLAPVLEETYGVMAYQEQVMQISSALAGFSMSQADVLLN 700 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AM KK+ E+M Q+E F++G +NGIS+ IAV +F+ + F+ YGFNK H+A YAV++ + Sbjct: 701 AMRKKVVEQMATQREDFLAGCRENGISERIAVKVFDQMEFFSGYGFNKPHSACYAVLAVR 760 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GD 832 TA++KTH+ EF+AA++T EMDN +++ + R+ I+++PP VN V+F+ GD Sbjct: 761 TAYLKTHFAPEFMAATLTSEMDNSDRVVALTGECRRLGIRVLPPDVNEGHVEFRATSRGD 820 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I + L+A+K VG R ++ A + F+ + D SRVD + +NRRVLESLV AGAL Sbjct: 821 --IQFGLSAVKNVGRAAVRSMVAARREHGSFEDVFDLTSRVDLRLVNRRVLESLVAAGAL 878 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE---NIFAHEKGTFSDKITLEKFSVENS 948 D R Q +++ Q +++R + +I + G+ L + + Sbjct: 879 DGLHGHRAQQYEAIGAALDLGQRAQRDRDSGQTSLMDILDTDAGSELRPRRLPEATPWPD 938 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 V E+ VLG Y SGHPL Y+ L + + +RL ++ + Sbjct: 939 GVALAKEKEVLGMYVSGHPLARYEKELSTFATATTMDLAEMVDDEPVRLGGIITHVKTTA 998 Query: 1009 TRKGSRIGWVTFSE 1022 RKG ++ +VT + Sbjct: 999 DRKGEQMAFVTLED 1012 >gi|262372309|ref|ZP_06065588.1| DNA polymerase subunit III [Acinetobacter junii SH205] gi|262312334|gb|EEY93419.1| DNA polymerase subunit III [Acinetobacter junii SH205] Length = 1187 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1017 (38%), Positives = 592/1017 (58%), Gaps = 56/1017 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ A++ PA+AITD +NL +A++F GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLVKAAVAEEMPALAITDLSNLHAAVKFYGACLGKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ ++ LL + G++ L E+VSR ++ +G+Q Sbjct: 63 MGSVIRLNDAEH---------------RATLLAMSNTGWRNLTEIVSRGFI--EGQQLSV 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E E LI+L G S + + ++ Q AE L + FG+R+Y++L R Sbjct: 106 PCVQKEWVLE-QAEDLIILLGQHSD-VGKMLCSSNPQKAEPLLEDWISKFGNRVYLSLTR 163 Query: 189 HRGYDRYRES----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 DR E + V+LA +++ +VA N+ F+ ++D+ AH+ + +A V+ Sbjct: 164 T---DRVGEEDFIVEAVKLAAKYQIGVVAHNDIHFIEQDDFYAHEARVCIADGYVLGDDK 220 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ +P+ Y K +M +FSD+P A+ENT +IA+RC+ LQ+ LP F + I Sbjct: 221 RPKPYSPEQYFKTAEQMSELFSDIPSAIENTYQIAKRCNVALQLGTYFLPDFPIPDGYTI 280 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGY 356 E+ R GLE RL +D Y +R+ +E+++I +M F GY Sbjct: 281 DTYFEHLSRE----GLEERLNH-LYPIDERDEDWPDIRKPYDERIKYEVDIILKMGFPGY 335 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 336 FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ Sbjct: 396 DFDVDFCIAGRDRVIEYVAQNYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455 Query: 477 KLIPNDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAG 531 K++P P QAI + + ++ A+P D + E++ KLEG+ R+ HA G Sbjct: 456 KMVPTKPLGVDLKQAIELEPQLKDIVTNPANPDHDDAAEIWEMALKLEGITRNTGKHAGG 515 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + + Sbjct: 516 VVIAPGKITDYSAVICDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINK 575 Query: 592 R---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R V ++++ +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VS Sbjct: 576 RIQSDVPLNIANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVS 635 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + +R +G E +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L Sbjct: 636 LYRPGPMDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLG 694 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ++ FI GA++ I + A +IF+ + KFA YGFNKSHAAA Sbjct: 695 GADLLRRAMGKKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAA 754 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++Y TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN F Sbjct: 755 YALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNKLEVLPPSVNMSLYHF 814 Query: 829 KVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 D R I Y L AIKGVG + ++++ D P+ L DFC R+D KK+N+R LE+L+ Sbjct: 815 HAIDERTIVYGLGAIKGVGEQAMQSVIDSRIKDGPYKDLFDFCHRIDLKKINKRTLEALI 874 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSV 945 AGALDC G R L+ L + A+ NR ++F E+ ++ +S Sbjct: 875 RAGALDCLGIERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPAKPVKPWSD 934 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 E VR + E+ LG Y +GHP+DVY+ L+ E T RG A +V+ Sbjct: 935 E---VRLKGEKDTLGLYLTGHPIDVYRSELKAFIPAKLNEVTPTRRGVTTVFAGLVL 988 >gi|86608659|ref|YP_477421.1| DNA polymerase III subunit alpha [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557201|gb|ABD02158.1| DNA polymerase III, alpha subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1165 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1059 (37%), Positives = 626/1059 (59%), Gaps = 58/1059 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L +++++ A P +A+TD ++ ALE + + GI P Sbjct: 2 SFVPLHLHSEYSLLDGASQLPRLVEQVVAMGLPGLALTDHGVMYGALELVKLCKSKGITP 61 Query: 70 IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QG 125 IIG ++ + D++D + +P +VL +T +GY+ L++L + +L QG Sbjct: 62 IIGNEMYVINGDIRDKSRK-------YPKYHQVVLAKNT-QGYKNLVKLTTISHLHGIQG 113 Query: 126 KQSV-RICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 K R C++ +L + EGLI+ +G +G + +A ++A + +++ FGD Sbjct: 114 KGIFSRPCINKEYLVQY-KEGLIVTSGCLAGEVPQAILQRRPEIAREVAAWYQEQFGDDY 172 Query: 183 YVNLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ +Q H GY DR+ Q+V++A +P++ TN+S F+S D EAHD L+ + + Sbjct: 173 YIEIQDH-GYQEDRFVNVQLVRIARELGIPIILTNDSHFISCWDVEAHDALLCIQTGKSL 231 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCS---FILQVHAPI 291 ++K+R R T YLK+ EM + D + EA+ NT+++ + ++ P Sbjct: 232 TEKNRLRYTGTEYLKSPEEMRRLCRDHLEQEVIDEAIANTLKVLEKIEGYDLFGEMRMPD 291 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 P D + L A GL R G Q+Y++RL FELN+I + Sbjct: 292 YPVPPGHSAD-------SYLTELAWQGLAKRC--GVAQPDQIPQNYQERLRFELNIIQQK 342 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 FS YFL+V D++++A++ IPVGPGRGS AGS+ AYAL IT+IDP+++ LLFERFLNP+ Sbjct: 343 GFSSYFLVVWDYVRYAREQGIPVGPGRGSAAGSLVAYALQITNIDPVKYGLLFERFLNPE 402 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R SMPD D DFC +RR E+I YV KYG ERVAQIITF + +KA L+DVGR L +PYS+ Sbjct: 403 RQSMPDIDTDFCIERRGELIDYVTRKYGQERVAQIITFNRMTSKAILKDVGRVLDIPYSE 462 Query: 472 VDRLCKLIPNDPAHPVSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHAST 527 D++ KLIP P L + I +D+ F+E DP+ R +E+++ LEG + Sbjct: 463 ADKMAKLIPVSRGKPAKLEEMIGEDTPAPEFKEKYEKDPTTHRWIELARLLEGTNKTFGV 522 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAG+VI PL ++VP+ + + +TQ++M+ IE GL+K DFLGL+ LT++Q++++ Sbjct: 523 HAAGVVIAKDPLDEIVPLQYNNEGQI-ITQYSMEDIESLGLLKMDFLGLRNLTMIQRAVE 581 Query: 588 FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + + GV +DL +P DD +TY LL GIFQLESSGM+Q + ++P +EDI ++ Sbjct: 582 LIREHNGVNIDLDNLPLDDKKTYQLLEKGELEGIFQLESSGMKQVVRELKPSNLEDISSV 641 Query: 647 VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++LYRPGP+D ++ + +RK+G++ + H L+ P+L++T G I+YQEQ+M+IAQ ++G Sbjct: 642 LALYRPGPLDTGMIPDFIDRKHGRKPVTYAHELLKPILQDTYGAILYQEQIMRIAQDMAG 701 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L +AD+LRRAMGKK EM+K +E+F+ GA+K G+S+ +A +F+ + FA+Y FNKS Sbjct: 702 YTLGQADLLRRAMGKKKVSEMEKHREQFVQGAAKRGVSQEVATELFDQMVAFAEYCFNKS 761 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+ AY +I++QTA++K +YP E++AA ++ + +K++++ IQI PP +N Sbjct: 762 HSTAYGLITFQTAYLKANYPTEYMAALLSSVGGDQDKVQRYITYCLSIGIQIQPPDINRS 821 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883 +DF + I + L A+K VG ++I+ A AD PF SL DFC RVD + +NRR LE Sbjct: 822 GMDFTPQGSSILFGLGAVKNVGEGAIQNILAARQADGPFTSLADFCQRVDLRIVNRRALE 881 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKI--- 938 +L+ AGA DC +R QL+ LD I +A K++ ++F G+ + Sbjct: 882 ALICAGAFDCISGNRKQLIADLDPILSWAAQRAKSKAIGQASLFDLLGSSGSAGNGFVEA 941 Query: 939 ----TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 E F + +R E E +LGFY S HPL + R + + + Sbjct: 942 PRGPVTEDFPPQE-KLRLERE--LLGFYVSDHPLRRIQEQARLLAPVNLADLGGCAADAS 998 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + A+V + + T+KG R+ + + EA FP Sbjct: 999 VGVLALVTAIKNVTTKKGDRMAILQLEDLTGSCEAVIFP 1037 >gi|325131475|gb|EGC54182.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M6190] gi|325137580|gb|EGC60161.1| DNA polymerase III, alpha subunit [Neisseria meningitidis ES14902] Length = 1144 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1046 (38%), Positives = 597/1046 (57%), Gaps = 64/1046 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + +AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 P+ + I D PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PVGAADVWIGNPD------APDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+L LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLVEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIIDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N +I Y+L AIKG G I A + F L DFC RV + +NRR LE+L+ G Sbjct: 820 PNMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKF 943 A D +R LL ++D N K N A++ G F + + L Sbjct: 880 AFDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDA 930 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVV 1002 + + S + E+ V+GFY SGHP Y +R++ + ++ ++ +++RLA V Sbjct: 931 PMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKLSKLKPQDSVRLAGFVT 986 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++G +I +V+ + + + E Sbjct: 987 AVRTMMGKRG-KIAFVSLEDLSGQVE 1011 >gi|89255882|ref|YP_513244.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica LVS] gi|115314369|ref|YP_763092.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica OSU18] gi|156501865|ref|YP_001427930.1| DNA polymerase III subunit alpha [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009646|ref|ZP_02274577.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica FSC200] gi|290953372|ref|ZP_06557993.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica URFT1] gi|295313376|ref|ZP_06803984.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica URFT1] gi|89143713|emb|CAJ78912.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica LVS] gi|115129268|gb|ABI82455.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|156252468|gb|ABU60974.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 1159 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1022 (39%), Positives = 603/1022 (59%), Gaps = 41/1022 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131 +L +D T F + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL E+ E +I L GG G + +A A++ + ++FG Y+ Sbjct: 111 PKFWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170 Query: 192 YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247 Y+ Y E + ++ A + L VATN ++F+ +DY+ H++ + +T++ + + + Sbjct: 171 YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP + +KE Sbjct: 230 FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288 Query: 308 ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++L GL+ RL + A + + Y+ RL E+++I M F GYFLIV D Sbjct: 289 FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 346 FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP Sbjct: 406 CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + + + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 466 PGTTFK-KILHEGEPLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + A+R +D+ Sbjct: 525 APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 585 ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMG Sbjct: 645 PTFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK EEM+KQ++ F GA+K + I + IF+ + FA YGFNKSHAAAYA+I+YQTA Sbjct: 705 KKKPEEMEKQRKIFKEGAAKHHNIDTKLVDEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836 W+K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 765 WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTIL 824 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L AIKG+G + I+ E F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 825 LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952 +R S++ K A +V + +++F + LE+ VE +++ Sbjct: 885 KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010 NE++ LG YFSGH +D + E+ + GN++R +A+M+ ++KT+ Sbjct: 945 INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004 Query: 1011 KG 1012 G Sbjct: 1005 TG 1006 >gi|27904720|ref|NP_777846.1| DNA polymerase III alpha subunit [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395824|sp|Q89AN8|DPO3A_BUCBP RecName: Full=DNA polymerase III subunit alpha gi|27904117|gb|AAO26951.1| DNA polymerase III alpha subunit [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 1077 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/981 (39%), Positives = 576/981 (58%), Gaps = 36/981 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S+++G + N + PAIAITD++NL ++F + + GI+PI Sbjct: 6 FVHLRVHSDFSMIDGLVKPNILAQHAKKLNMPAIAITDSSNLHGMIKFYRATFSQGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSV 129 IG + D +N I LL GY+ L+ L+SR Y + K V Sbjct: 66 IGVDFKVFPDDKYVSSNM-------FTKITLLAVNNSGYRNLLLLLSRAYKIGYNNKVGV 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I WL E +G+I+L+GG G I N+ + L + + F + Y+ + R Sbjct: 119 FITKEWLVE-HRKGIILLSGGCYGDIGVNLLNNNKSLVLNCLSFYNRFFENFYYLEIMRI 177 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPR 247 R + S++ ++ +P+VATN FL+++D+E H + + + T+ S Sbjct: 178 GRSNEEQYISRIKDISAREGIPVVATNEVCFLNKQDFEVHKIRVFINLGCTIKSNSAHYN 237 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 TP +++ +EM +F D P+A+ NT+EI++RC+ IL+ + LP+F + Sbjct: 238 YTPQQFMRTSNEMEELFLDFPDAISNTIEISKRCNVILKFNKYFLPKFQTGNMN-----T 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L KA G++ RL Q K + Y RL ELNVI +M F GYFLIV +FI Sbjct: 293 TDFLVMKAKKGMQKRLIQLFPNKQDRINNVNRYYTRLLSELNVINKMGFPGYFLIVMEFI 352 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAKKN+IPVGPGRGSGAGS+ +Y L IT++DPL F LLFERFLNP+R+ MPD D+DFC Sbjct: 353 NWAKKNDIPVGPGRGSGAGSLVSYVLNITELDPLSFDLLFERFLNPERVFMPDLDVDFCM 412 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D+RD+VI +V YG E V+QII+FG+L AK+ +RDVGR PY ++RL KLIP D Sbjct: 413 DKRDKVIEHVSKIYGEESVSQIISFGTLTAKSVIRDVGRVFGFPYGFLNRLSKLIPLDLG 472 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +AI+ E D V L+ I+++LEG+ R+ S HA G+VI + ++ VP Sbjct: 473 MTLE-KAISQKVELLELYKFDKDVRELINIAKRLEGITRNVSKHAGGVVISPKKITDFVP 531 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLS 599 +Y D + PVTQF+ I GL+KFDFLGLKTLT++ ++ + + ++++ Sbjct: 532 LYYDENGNNPVTQFDKNDIGYTGLVKFDFLGLKTLTVIHGTVKMINTKFSNNQKKLININ 591 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I D + L T T+ +FQLES+GM+ + ++PD ED++ALV+L+RPGP+ + + Sbjct: 592 TISLKDKNCFKFLQTAQTIAVFQLESNGMKDLIRRLKPDSFEDLVALVALFRPGPLQSGM 651 Query: 660 VYN--NRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 V N NRK+GKEKI+ H L+ P+LK T G+I+YQEQVM+I Q+ + Y+L AD+ Sbjct: 652 VDNFINRKHGKEKILYPNKECQHALLKPILKSTYGIILYQEQVMKIVQVFANYTLGHADL 711 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRR M KK + EM+K +E F +GA +N I+ ++ IF LL +FA Y FNKSH+ +YA++ Sbjct: 712 LRRTMEKKDQVEMNKHREMFKNGAKENNINTKLSTKIFNLLEQFAGYAFNKSHSVSYALV 771 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQT W+K +YP EF+A++M ++DN++KI + + ++I+PP+VN FKV D Sbjct: 772 SYQTLWLKLYYPEEFMASAMNADIDNIKKIVVLINECKVMKLKIIPPNVNQSDYYFKVDD 831 Query: 833 NR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 ++ I Y L AIKG+G + I+ A + K F L D C V+SK++ +V+E L+ +G Sbjct: 832 DKNIIYGLGAIKGIGKSVILDIVNARKNRKRFSELFDLCVSVNSKRITHKVIEKLIMSGG 891 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 DCFG +R L+ S + I K A K+ K ++F F+ + S+ Sbjct: 892 CDCFGLNRSILMHSCEYIIKSANQYLKSIILKKRDLFGLLLDDFNVIKKKYYSIKKLYSM 951 Query: 951 R--FENEQRVLGFYFSGHPLD 969 + + E+ LG Y +GHP+D Sbjct: 952 KQILDWEKDSLGLYLTGHPVD 972 >gi|219684390|ref|ZP_03539334.1| DNA polymerase III subunit alpha [Borrelia garinii PBr] gi|219672379|gb|EED29432.1| DNA polymerase III subunit alpha [Borrelia garinii PBr] Length = 1161 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1015 (40%), Positives = 620/1015 (61%), Gaps = 34/1015 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFFKKHDDLGKMSY----HLILLAKNEIGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 HRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H D+ ++ + + Y+ EL PL ATN+S +++ ED A D+++ + S ++R Sbjct: 195 HGIKDQNIVNERL-VEYSRELGVPLAATNDSHYVNREDAVAQDIIVCIGTGAKKSDENRL 253 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDI 303 ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + + Sbjct: 254 KMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEFNTL 313 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + L + GL+ R + R +EL+VI RM F GYFLIV DF Sbjct: 314 GEY----LEYLTLEGLKFRYRT-------LTSKIKDRAFYELSVIIRMGFEGYFLIVWDF 362 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC Sbjct: 363 IKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFC 422 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP+ P Sbjct: 423 FEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIPDGP 482 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 VSL+ + DD+ +E + P L++ + LEG+ RHASTHAAGIVI PL+ V Sbjct: 483 K--VSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLTDYV 540 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--I 601 P+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + I Sbjct: 541 PLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNI 598 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 599 PDNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQF 658 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K G + I HP + +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 659 IAAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 718 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 ++EMD+ K F+ GA + G K +A IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 719 EDEMDEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKA 778 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L A Sbjct: 779 NYPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLNA 838 Query: 842 IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 839 IKNLGEIVVDLIIDEREKNGKYISFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKT 898 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSVENSSVRFENEQRV 958 L ++LD + + + N+ ++F KG + F + S E E+ + Sbjct: 899 LFENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIQQNFNYQAFKEYSYSELLEFEKEL 958 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 LGFY SGHPLD YK + + +AT + + ++ + ++ S + +T++ + Sbjct: 959 LGFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSIVQFSGILNSVKVIQTKRNN 1013 >gi|319779485|ref|YP_004130398.1| DNA polymerase III alpha subunit [Taylorella equigenitalis MCE9] gi|317109509|gb|ADU92255.1| DNA polymerase III alpha subunit [Taylorella equigenitalis MCE9] Length = 1178 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1003 (38%), Positives = 590/1003 (58%), Gaps = 53/1003 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ H+ +S+ +G + + ++ K+ + PAIAI+D NLF ++F + A GI+PI Sbjct: 9 FVHLRCHTEFSVFDGTIRIEELISKVQSVGMPAIAISDLANLFGFVKFYKGARKLGIKPI 68 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 C +D Q ++ I ++ + +GY RL E++S+++L ++G R Sbjct: 69 AACDFVLDTQGVSGEAHR----------IEIIATNNKGYLRLCEIISKVWLENEGLDVAR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188 + WL + T GLI L+GG G I +A F N A K L + + F D Y+ LQR Sbjct: 119 LKKEWLTD--TSGLIALSGGIYGDIGQALF-NKPIEAPKLLEDWVERFPDGFYIELQREL 175 Query: 189 ---HRGYDRYRE------SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 H Y ++ + VQLA +P+VAT+ FL + +++HDV + +A Sbjct: 176 PDQHGRYSKFGQLSNEYSEMAVQLAAKFGVPVVATHPIQFLESDGFDSHDVRVCIAEGEF 235 Query: 240 VSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 +S K + R + + Y + +M +F D+P A+ NT EIA+RC+ L++ P LP F Sbjct: 236 LSDPKRKQRFSREQYFYSPEQMCKLFEDIPSAITNTFEIAKRCNITLKLGKPQLPIFPTP 295 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E + + + LE AI K A Y+ RL+ E+ VI M F+GYFL Sbjct: 296 EGVSVDEYFAYLAKEGLAKRLEFLFPDEAIRK-EKAPIYQARLNKEIEVIESMGFTGYFL 354 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI W K N +PVGPGRGSGAGS+ AY+L IT +DPL++ LLFERFLNP+R+SMPDF Sbjct: 355 IVQDFINWGKNNGVPVGPGRGSGAGSLVAYSLGITGLDPLQYDLLFERFLNPERVSMPDF 414 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQD R++VI YV +KYG + V+QI+TFG+L A+A ++DVGR +Q+PY+ D L KL Sbjct: 415 DVDFCQDNREKVIDYVIDKYGEDSVSQIVTFGTLGARAVVKDVGRVMQVPYAVCDELSKL 474 Query: 479 IPNDPAHPVSLQ----AIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIV 533 IPN P P +LQ I D D S + +++ S K+EGL R+ THA G++ Sbjct: 475 IPNSPVDPYTLQRALNEIKDIQDLYNNSEGDSSDIKTVVDYSLKIEGLTRNTGTHAGGVL 534 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---- 589 I L+ P++R S V+Q++ IE GL+KFDFLGL+ LT+L ++ ++ Sbjct: 535 IAPGKLTDFTPLHRLPGSTTAVSQYDKNDIEDVGLVKFDFLGLRNLTILDWTVRYVKEFN 594 Query: 590 -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 AQ+ DL +P DD TY LL+ T +FQLES GM+ L ++P EDI+A+++ Sbjct: 595 EAQK--DFDLDRLPLDDKATYKLLSDGNTTAVFQLESDGMKNLLMKLKPSTFEDIVAVLA 652 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+++ +V + +RK+G+ K+ H ++ +LK T GVI+YQEQVM I+Q++ GYS Sbjct: 653 LYRPGPLNSGMVDDFVDRKHGRAKVDYFHKDLESVLKPTYGVIVYQEQVMLISQIIGGYS 712 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM +Q+E F GA + G +A N+F+L+ FA YGFNKSH+ Sbjct: 713 LGGADILRRAMGKKKLEEMARQREIFQKGAMERGYDPNLATNLFDLMEMFASYGFNKSHS 772 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AYA+I+YQTAW+K ++P EF+AA+MT +M++ +K++ F +D ++++ P++NT Sbjct: 773 VAYALIAYQTAWLKAYHPAEFMAATMTSDMNDTDKVQIFWEDCIHNGLKLLAPNINTSYY 832 Query: 827 DFK-VGDNR---------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK 875 F+ V D + I Y L AIKGVG I++A + F SL+D RVD Sbjct: 833 RFEPVKDEQSNLGLPPKTIGYGLGAIKGVGQNVVEEIVKARNEGGDFISLQDLIKRVDRT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 + +R +E+L+ +GA+D +R L+ +D+ A E+++ ++FA ++G Sbjct: 893 IVTKRSIEALIKSGAMDVLDKNRALLMAMVDDCYIAANQAEESK--DQWDLFADDEGGAI 950 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + E + E+ +GFYFS V++ +RK Sbjct: 951 EVSVPEGIEAWTLKEVLDAERESIGFYFSNDLFGVWRSEVRKF 993 >gi|241667125|ref|ZP_04754703.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875679|ref|ZP_05248389.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841700|gb|EET20114.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 1159 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1025 (39%), Positives = 603/1025 (58%), Gaps = 43/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL++H+ YS+++ + L ++ + A+A+TD NLF+A++F ++A + G++PI Sbjct: 2 FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSV 129 G +L ID T F V +VLL +GYQ ++ LVS+ Y D+ Sbjct: 62 FGVELKID------------TEF-GVCDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIP 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL++I +I L GG +G + +A E+ + +FG Y+ Sbjct: 109 LIPKDWLKDINLANVICLNGGQNGELGKAILAKDDIRVEEIISENIAIFGRDNYIIEIHK 168 Query: 190 RGYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDR 245 Y+ Y E + ++ A H L VATN ++F+ +DY+ H++ + +T++ + + Sbjct: 169 LEYENEGLYNE-KALEFASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRK 227 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + T + YLK+ EM FS+LP LENT+ IA+RC+ + P LP D Sbjct: 228 SKFTREQYLKSADEMYQTFSELPVLLENTLVIAKRCNVTFDLGKPCLPT-----VDIPDG 282 Query: 306 EEENELRNK-AVAGLEVRLAQ----GAIAKGYHA-QDYRQRLDFELNVIARMKFSGYFLI 359 E E +K GL+ RLA+ + K H + Y+ RL E+++I M F GYFLI Sbjct: 283 LTEREYFSKLCYQGLDKRLAKILENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFD Sbjct: 343 VEDFIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC RD VI+YV+ KYG + V QIIT+G++ AK +RDV R + + DR+ KLI Sbjct: 403 IDFCIQGRDRVIKYVEQKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P P + + + + AD V ++E +QKLEGL R HAAGIVI + Sbjct: 463 PETPGTTFK-KILHEGEPLYDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRG---VK 595 S P+Y + + VTQF+ +E GL+KFDFLGLK LT+++ ++ + A+R V Sbjct: 522 SDFAPVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSANEVP 581 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+S IP DD +T+ LL T+GIFQLES GM+Q ++ + E+IIALV+LYRPGP+ Sbjct: 582 LDISDIPLDDEKTFKLLQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPM 641 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +NI + +RK+G+++ + +HPL++ +L+ET G+ +YQEQVMQ+AQ L+GY+L AD+LRR Sbjct: 642 ENIPTFVDRKHGRKQTIYLHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRR 701 Query: 716 AMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 AMGKK EEM++Q++ F GA+K + I +A IF+ + FA YGFNKSHAAAYA+I+Y Sbjct: 702 AMGKKKPEEMEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAY 761 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDN 833 QTAW+K HYP E++AA M+ +M N +++ KF DA+ I ++ P+VN D Sbjct: 762 QTAWLKAHYPDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKG 821 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I L AIKG+G+ + I+ E F S+ D RVD +K+N++ LE+L FAGA+ Sbjct: 822 TILLGLGAIKGLGSEAIKSILNEREVGGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIK 881 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR 951 +R S++ K A +V + ++F + LE+ VE ++R Sbjct: 882 DISKNRATAFNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLR 941 Query: 952 --FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQK 1007 NE++ LG YFSGH +D + E+ + GN++R +A+M+ ++ Sbjct: 942 ELLINEKKALGMYFSGHIIDGESHWRNHVSFSDLEKIQKPNMDGNSVRIIASMITPPARR 1001 Query: 1008 KTRKG 1012 KT+ G Sbjct: 1002 KTKTG 1006 >gi|226940314|ref|YP_002795388.1| DNA-directed DNA polymerase III, alpha subunit [Laribacter hongkongensis HLHK9] gi|226715241|gb|ACO74379.1| DNA-directed DNA polymerase III, alpha subunit [Laribacter hongkongensis HLHK9] Length = 1147 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1042 (38%), Positives = 600/1042 (57%), Gaps = 40/1042 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL++HS +S+ +G + + + + A ++ PA+ ++D NLF ++F + G+ Sbjct: 3 TPRFIHLRLHSEFSVTDGITRIGDAVKRAALERMPALGLSDLMNLFGMVKFYKACLGKGV 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-TAEGYQRLIELVSRMYLLDQGK 126 +PI+ ++ N +Q PS LL++ GY RL EL++ Y L+Q + Sbjct: 63 KPIVAVDAWLE---NPADRDQ--------PSRCLLIAMNTAGYHRLSELLTDAYRLNQYR 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + WL E LI ++G G +A + ++A+ + + F R Y+ + Sbjct: 112 GRAELQREWLTREACENLIFVSGAQHGDTGQALLAGNLELAQALARDWAQRFPGRCYLEI 171 Query: 187 QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 QR D E +++ LA LP+VAT+ FL +D+ AH+ + +A ++ Sbjct: 172 QRTGKPEADTCTE-RMLWLAGETGLPVVATHPVQFLDRDDFMAHEARVCIAEGEMLGNPK 230 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC--- 300 R R T + Y K+ EM ++F+D+PEALEN+VEIARRC+ + + LP F + Sbjct: 231 RVRHYTEEQYFKSTDEMAALFADVPEALENSVEIARRCNIEILLGKNFLPDFPTPDGLSL 290 Query: 301 -DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D + K E L + A L A + YR+RL FEL+ I +M F GYFLI Sbjct: 291 DDYLIKRSEEGLVERMQA-----LYPDAGQREAEMPRYRERLKFELDTIIQMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N PVGPGRGSGAGS+ A+++ ITDI+PL ++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKANGCPVGPGRGSGAGSLVAFSIGITDINPLDYALLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQD R VI YV+ +YG + V+QI TFG++ AKA +RDVGR L +PYS D L KLI Sbjct: 406 IDFCQDNRWRVIEYVRERYGADAVSQIATFGTMAAKAVVRDVGRVLDLPYSFCDGLSKLI 465 Query: 480 PNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P SL A+ + +E + V +L +++KLEGL R+ HA G++I Sbjct: 466 PAAPGKQYSLDDAVEMEPILKERLEKEEEVSQLWALAKKLEGLTRNIGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 ++ PMY+ D PV+ + +E GL+KFDFLGL+ LT++ +++++ D Sbjct: 526 ITDFCPMYQASGDDASPVSMLDKGDVEDVGLVKFDFLGLRNLTIIDLAVNYIKALDPAFD 585 Query: 598 LSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L L +PF D Y +L T +FQLES GM++ LE ++PD EDIIA+++LYRPGP+ Sbjct: 586 LDLNHMPFTDPAAYRVLQQANTTAVFQLESEGMKKLLEKLKPDRFEDIIAVLALYRPGPL 645 Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 + +V + RK GK+++ HP + L T GVI+YQEQVMQI+Q++ GY+L AD+L Sbjct: 646 GSGMVDDFILRKAGKQEVDYFHPDLTACLDPTYGVIVYQEQVMQISQIIGGYTLGGADML 705 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K + F GA K G K +A ++F+L+AKFA+YGFNKSH AAYAV+S Sbjct: 706 RRAMGKKKPEEMAKHRGIFCEGAEKKGYPKALAEHLFDLMAKFAEYGFNKSHTAAYAVVS 765 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGD 832 YQTAW+K HYP F+AA+M+ E+DN ++++ F D+ ++ +PP +N F V Sbjct: 766 YQTAWLKAHYPSAFMAATMSSELDNTDQLRVFYDDSLANQLEFLPPDINESVYRFVPVDA 825 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 RI Y+L AIKG G HI + F L DFC R D + +NRR +E+L+ AGA Sbjct: 826 RRIRYALGAIKGTGQAAVEHIEAVRKEGGRFTDLFDFCRRTDKRIVNRRTIEALIRAGAF 885 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDKITLEKFSVENSSV 950 D +R +L+ N++ E+ N ++ +F + + + + + + + Sbjct: 886 DTLEPNRARLIA---NVELAMTMAEQEAQNANQGGLFDLLDTSAAPAVEMMQVRPWDEAT 942 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 R E+ +GF+ SGHP + +R++ +K +A + LA ++ + K Sbjct: 943 RLTEEKTAIGFFLSGHPFHAHADTVRRL-VKTPLNRIAPKKEPQW-LAGTIMGVRTKVGN 1000 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 +G ++ +V + + E +FF Sbjct: 1001 RG-KMAFVQLDDGTAKLEVSFF 1021 >gi|167626567|ref|YP_001677067.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596568|gb|ABZ86566.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 1159 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1025 (39%), Positives = 601/1025 (58%), Gaps = 43/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL++H+ YS+++ + L ++ + A+A+TD NLF+A++F ++A + G++PI Sbjct: 2 FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSV 129 G +L ID T F V +VLL +GYQ ++ LVS+ Y D+ Sbjct: 62 FGVELKID------------TEF-GVCDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIP 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL+ I +I L GG +G + +A E+ + +FG Y+ Sbjct: 109 LIPKDWLKNINLANVICLNGGQNGELGKAILAKDDIRVEEIISESIAIFGRDNYIIEIHK 168 Query: 190 RGYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDR 245 Y+ Y E + ++LA H L VATN ++F+ +DY+ H++ + +T++ + + Sbjct: 169 LEYENEGLYNE-KALELASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRK 227 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + T + YLK+ EM FS+LP LENT+ IA+RC+ + P LP D Sbjct: 228 SKFTREQYLKSADEMYQTFSELPVLLENTLAIAKRCNVTFDLGKPCLPT-----VDIPDG 282 Query: 306 EEENELRNK-AVAGLEVRLAQ----GAIAKGYHA-QDYRQRLDFELNVIARMKFSGYFLI 359 E E +K GL+ RLA+ + K H + Y+ RL E+++I M F GYFLI Sbjct: 283 LTEREYFSKLCYQGLDKRLAKILENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFD Sbjct: 343 VEDFIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC RD VI+YV+ KYG + V QIIT+G++ AK +RDV R + + DR+ KLI Sbjct: 403 IDFCIQGRDRVIKYVEQKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P P + + + + AD V ++E +QKLEGL R HAAGIVI + Sbjct: 463 PETPGTTFK-KILHEGEPLYDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK--- 595 S P+Y + + VTQF+ +E GL+KFDFLGLK LT+++ ++ + A+R Sbjct: 522 SDFAPVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSANETP 581 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+S IP DD +T+ LL T+GIFQLES GM+Q ++ + E+IIALV+LYRPGP+ Sbjct: 582 LDISDIPLDDEKTFKLLQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPM 641 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +NI + +RK+G+++ +HPL++ +L+ET G+ +YQEQVMQ+AQ L+GY+L AD+LRR Sbjct: 642 ENIPTFVDRKHGRKQTTYLHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRR 701 Query: 716 AMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 AMGKK EEM++Q++ F GA+K + I +A IF+ + FA YGFNKSHAAAYA+I+Y Sbjct: 702 AMGKKKPEEMEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAY 761 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDN 833 QTAW+K HYP E++AA M+ +M N +++ KF DA+ I ++ P+VN D Sbjct: 762 QTAWLKAHYPDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKG 821 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I L AIKG+G + I+ E A F S+ D RVD +K+N++ LE+L FAGA+ Sbjct: 822 TILLGLGAIKGLGGEAIKSILNEREASGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIK 881 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR 951 +R S++ K A +V + ++F + LE+ VE ++R Sbjct: 882 DISKNRATAFNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLR 941 Query: 952 --FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQK 1007 NE++ LG YFSGH +D + E+ + GN++R +A+M+ ++ Sbjct: 942 ELLINEKKALGMYFSGHIIDDESHWRNHVSFSDLEKIQKPNMDGNSVRIIASMITPPARR 1001 Query: 1008 KTRKG 1012 KT+ G Sbjct: 1002 KTKTG 1006 >gi|254368720|ref|ZP_04984733.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica FSC022] gi|157121641|gb|EDO65811.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica FSC022] Length = 1159 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1022 (39%), Positives = 602/1022 (58%), Gaps = 41/1022 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131 +L +D T F + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL E+ E +I L GG G + +A A++ + ++FG Y+ Sbjct: 111 PKFWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170 Query: 192 YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247 Y+ Y E + ++ A + L VATN ++F+ +DY+ H++ + +T++ + + + Sbjct: 171 YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP + +KE Sbjct: 230 FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288 Query: 308 ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++L GL+ RL + A + + Y+ RL E+++I M F GYFLIV D Sbjct: 289 FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 346 FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP Sbjct: 406 CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + + + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 466 PGTTFK-KILHEGEPLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + A+R +D+ Sbjct: 525 APVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 585 ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + +RK+G+++I +HPL+ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMG Sbjct: 645 PTFIDRKHGRKQITYLHPLLKGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK EEM+KQ++ F GA+K + I + IF+ + FA YGFNKSHAAAYA+I+YQTA Sbjct: 705 KKKPEEMEKQRKIFKEGAAKHHNIDTKLVDEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836 W+K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 765 WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGMIL 824 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L AIKG+G + I+ E F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 825 LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVR--F 952 +R S++ K A +V + +++F + LE+ VE +++ Sbjct: 885 KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELL 944 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR-LAAMVVSKQQKKTR 1010 NE++ LG YFSGH +D + E+ + GN++R +A+M+ ++KT+ Sbjct: 945 INEKKALGMYFSGHIIDEESHWRNHVSFSDLEKIQQPNMDGNSVRIIASMITPPARRKTK 1004 Query: 1011 KG 1012 G Sbjct: 1005 TG 1006 >gi|294101731|ref|YP_003553589.1| DNA polymerase III, alpha subunit [Aminobacterium colombiense DSM 12261] gi|293616711|gb|ADE56865.1| DNA polymerase III, alpha subunit [Aminobacterium colombiense DSM 12261] Length = 1144 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1042 (38%), Positives = 632/1042 (60%), Gaps = 44/1042 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA+ + +++A+ PA+A+TD ++ A+EF + AAGI+PI Sbjct: 6 FVHLHVHSEYSLLDGAIRCGELAERVASWGMPAVALTDHGAMYGAIEFYDRCLAAGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ +D + + +G+ ++LL +GY LI+LVS + D R Sbjct: 66 VGCEVYVDPEGHTSREKKGRNFH-----LLLLAENQQGYNNLIKLVS-IANTDGFYYRPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I L + ++G+I + +G I A + ++ + G D ++ + Sbjct: 120 IDYDLLTQY-SQGIIASSACLAGEIPSLILQGKENDALAKAHMYRDIMGEDNFFLEIM-- 176 Query: 190 RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Y+ E VV Q+A + LVATN++ +L++EDY+ H++L+ V ++ D Sbjct: 177 --YNAIPEQAVVNRSLVQMARKNNFNLVATNDAHYLNKEDYDWHEILLCVQTGATINDPD 234 Query: 245 RPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCS--FILQVHAPILPRFIEKEC 300 R T D YL++ EM S+F ++LP+AL+NT+ IA RCS F L LP F E Sbjct: 235 RMSFSTNDFYLRSPEEMDSLFGAELPDALDNTLAIAERCSLKFDLGTRDYKLPSFDLPEG 294 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + E+ L +A+AGL+ RL + + ++Y++RLD+EL VI +M F+GYFLIV Sbjct: 295 ETL----ESNLEKEAMAGLKQRLHKDNVP-----EEYKKRLDYELKVIKKMGFAGYFLIV 345 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 A I+ AK +IP+GPGRGS AGS+ AY+L IT++DPL+++LLFERFLNP+R+SMPD D Sbjct: 346 ASIIRAAKDRDIPIGPGRGSAAGSLVAYSLRITELDPLKYNLLFERFLNPERVSMPDIDT 405 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D R+E+++Y+ KYG +RVAQIITF +++KAA+RDVGRAL MPYS VD + KLIP Sbjct: 406 DVSDKGREELLQYIAEKYGVDRVAQIITFDRMKSKAAIRDVGRALGMPYSDVDVVAKLIP 465 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 D A + +A+ R D +V RLL+ + K+EGL RH S HAAG+VI P++ Sbjct: 466 -DGARSIP-EALDQSEDLRNLTHKDLAVSRLLDSASKIEGLARHCSQHAAGVVITPMPIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599 LVP+ R + + VTQF M+ +EK GL+K DFLGLKTL++L+++++ + G DL+ Sbjct: 524 DLVPVRR-IGENQIVTQFPMEPLEKLGLVKMDFLGLKTLSVLEEAINNIKLNGKTPPDLN 582 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D+ TY +L TLG+FQLES+GMRQ L ++PDC ED+IA+++LYRPGP+ + + Sbjct: 583 KIPLNDNLTYEMLQRGNTLGVFQLESTGMRQLLRKIKPDCFEDLIAVLALYRPGPLGSGM 642 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V Y RK+G+ + +HP + +LKET GVI+YQEQVMQ A L+GYSL EAD+LRRAM Sbjct: 643 VDQYIERKHGRAVVEYLHPELSEVLKETYGVILYQEQVMQSAACLAGYSLGEADLLRRAM 702 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK E M +Q++ F G +++ + A IF+++ +FA YGFNKSH+AAYA+ISYQTA Sbjct: 703 GKKKVEVMQQQRKMFADGCAQHNVPARKAEEIFDIIQEFAGYGFNKSHSAAYALISYQTA 762 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 ++K ++ EF+AA +T ++ + + + ++ ++ R I+++PP VN+ F D + Sbjct: 763 YLKANFQPEFMAAYLTSQIGSKKDVMARYIREVRNSGIEVLPPDVNSSMESFAAVDEVVR 822 Query: 837 YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L A+ G I+ A F SL +F RVD + +N+ V+E+L+ AGA D Sbjct: 823 FGLGAVAKAGHGAVEAIIAARECGGEFSSLWNFLCRVDLRVVNKSVIENLIKAGAFDGLN 882 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFE 953 +R QL+ +L + AQ + N+ + ++ + S + E +E+ ++ R + Sbjct: 883 SNRRQLISALPDFVALAQR-KGEEKNQCSLLSLLDEDSESGDLEPELPDIEDYAIYERLD 941 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRK 1011 E+ V+G Y SGHP ++ ++ + ++ R N+ ++ M++S +K T++ Sbjct: 942 MEKEVVGLYISGHPFTQHETLVSRYSTCSI-SNLKYWRSRNLFPQIGGMILSVHEKYTKR 1000 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G +G + + + E FP Sbjct: 1001 GDPMGILEVEDAESKLEVICFP 1022 >gi|262376213|ref|ZP_06069443.1| DNA polymerase subunit III [Acinetobacter lwoffii SH145] gi|262308814|gb|EEY89947.1| DNA polymerase subunit III [Acinetobacter lwoffii SH145] Length = 1190 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1013 (38%), Positives = 597/1013 (58%), Gaps = 48/1013 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ +Q PA+A+TD +NL +A++F K + GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLVKAAEEEQMPALALTDLSNLHAAVKFYGKCLSKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ ++ +MT LL T G++ L ELVS ++ G+Q Sbjct: 63 LGSEIRLNDAEH-RMT--------------LLAMTNTGWRNLTELVSEGFI--SGQQLDI 105 Query: 131 ICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E +I L G S + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 106 PCVQKQWILN-QPEDMIALLGMHSD-VGKMLMSSNPQKAEPLLEEWVEKFGNRVYLALTR 163 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 +R + + V+LA + + +VA N+ F++ +DYEAH+ + +A V+ RP+ Sbjct: 164 TNRPDEDNFILEAVKLAKKYNIGVVAHNDVHFMTRDDYEAHEARVCIADGYVLGDNRRPK 223 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P+ Y K+ EM ++FSD+P A+ENT IA+RC+ LQ+ LP + E I Sbjct: 224 TYSPEQYFKSAEEMTALFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEGHTI--- 280 Query: 307 EENELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + + GLE RL Q + Y +R+++E+N+I M F GYFLIV Sbjct: 281 -DTFFAHLSKEGLEERLNFLYPPEQRDEDWPEIRKPYDERIEYEINIINSMGFPGYFLIV 339 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+ Sbjct: 340 MDFIQWSKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFDV 399 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC RD VI YV YG + V+QI TFG++ AK A+RDV R L Y DR+ K+IP Sbjct: 400 DFCIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIP 459 Query: 481 NDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIG 535 P L+++ + + ++ ++P D + E++ KLEG+ R+ HA G+VI Sbjct: 460 TKPLGLSLLESLEAEPQLKDIVTNPSNPDHDDAAEIWEMALKLEGITRNTGKHAGGVVIS 519 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592 ++ + D V QF+ +E AGL+KFDFLGL+ LT+++ ++ + +R Sbjct: 520 PTKITDFSAVMCDADGTGRVAQFDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKRIKA 579 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ I +D + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRP Sbjct: 580 DKPLDIAYIQLEDKDAYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRP 639 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+D I + +R +G + +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD+ Sbjct: 640 GPMDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGADL 698 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM KQ++ FI GASK I + A +IF+ + KFA YGFNKSHAAAYA++ Sbjct: 699 LRRAMGKKKPEEMVKQRQIFIEGASKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALV 758 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTAW+K HYP EFL+A +T EM N + + D R+ N++++PPSVN F D Sbjct: 759 AYQTAWLKAHYPAEFLSAVLTSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSLYQFHAID 818 Query: 833 NR-IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + I Y L AIKGVG + ++++ A + PF L DFC R+D KK+N+R LE+L+ +GA Sbjct: 819 EQTIVYGLGAIKGVGEAAMQSVIDSRAQEGPFRDLFDFCHRIDLKKINKRTLEALIRSGA 878 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949 LDC G R L+ L + A+ NR ++F E+ ++ ++ E Sbjct: 879 LDCLGIDRADLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPSKPVKPWADE--- 935 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 VR + E+ LG Y +GHP+DVY+ L+ E T RG A +VV Sbjct: 936 VRLKGEKDTLGLYLTGHPIDVYRNELKAFVPCQINELTPTRRGVTTVFAGLVV 988 >gi|189218920|ref|YP_001939561.1| DNA polymerase III, alpha subunit [Methylacidiphilum infernorum V4] gi|189185778|gb|ACD82963.1| DNA polymerase III, alpha subunit [Methylacidiphilum infernorum V4] Length = 1159 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1019 (39%), Positives = 597/1019 (58%), Gaps = 39/1019 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +HS YSLL+ + + +++ K PA+A+TD NL+ ++F + + I+P Sbjct: 4 NFVHLHLHSEYSLLDASARIKDVVSKAKQLGMPAVALTDHGNLYGTIDFYKACVSQNIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+ I K + + LL +GY+ L++L+S+ +L + Sbjct: 64 IIGCEAYITSGSRFDR----KGSRSHIYHMTLLAKNNQGYKNLLKLISKAHL-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L L+E GLI +G +G I + + A+K +LF + Y+ +Q Sbjct: 119 RIDLELLKE-HKAGLIGTSGCMNGEIPQKILEGDLKGAKKLAEELSRLFDPNCFYLEIQN 177 Query: 189 HRGYDRYRESQVV--QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G +E + V A + LPLVATN+ ++ +ED + HDVL+ + ++ + R Sbjct: 178 H-GLKEEKEIREVLADFAQSLGLPLVATNDVHYVEQEDAQFHDVLLCIGTASQIHDPKRK 236 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ Y K +M +F++ P+A+ENT IAR C +++ P + K Sbjct: 237 KYPCPEFYFKTPQQMAELFNEFPQAVENTANIARLCDVTIELGKNHFPSYT---LPSPYK 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR GL+ R ++ ++RL++EL+VI + FS YFLIV DFI Sbjct: 294 THGEYLRTLCYEGLQKRYDN-------ISEQIKERLEYELSVIEQTGFSSYFLIVWDFIH 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AKK IPVGPGRGS AGS+TAY L ITDIDP+++ L+FERFLNP R+S PD DIDFC + Sbjct: 347 YAKKEGIPVGPGRGSAAGSLTAYVLGITDIDPIKYGLVFERFLNPQRVSPPDIDIDFCYN 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR +VI YV+ KYG VAQIITFG+L AK A+RDV R L M Y + DR+ K+IP DP Sbjct: 407 RRSQVIDYVRKKYGERSVAQIITFGTLGAKMAVRDVARVLGMSYQEADRIAKMIPPDPQL 466 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A + + + DP +L I+ KLEGL R A HAAG+VI + L +P+ Sbjct: 467 TLE-RARELNPQLDQLWENDPQSREVLTIATKLEGLTRQAGVHAAGVVISEGDLLDFIPL 525 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 R +++ VTQ++M+ I + GL+K DFLGLKTLT++ + L + ++ + +D P D Sbjct: 526 SRGEHNEI-VTQWSMEPIAEIGLLKMDFLGLKTLTVISECLALIKEKENILLDPKQFPLD 584 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY LL T+G+FQLESSGM + ++ ++P IEDIIALV+LYRPGP++NI Y +R Sbjct: 585 DKNTYELLGRGQTIGVFQLESSGMVELVKKLKPGNIEDIIALVALYRPGPMENIPAYADR 644 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K GK I HPL++P+LK+T GV+IYQEQVMQ A +L+GYSL E+D+LRRAMGKK EE Sbjct: 645 KLGKVPITYDHPLLEPILKDTYGVMIYQEQVMQAANVLAGYSLGESDLLRRAMGKKKPEE 704 Query: 725 MDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M KQ+++FI G KN I + A+ IFE L KFA YGFNK+H+A Y ++Y TA++K +Y Sbjct: 705 MRKQRDQFIKGCKEKNNIPEEKAIQIFETLEKFAGYGFNKAHSACYGYLAYVTAYLKANY 764 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PV +L ++ E + EKI+ + R+ I ++PP ++ V F V I + L+AIK Sbjct: 765 PVFYLCTLLSYESGDTEKIELLVSECRRMGIGVLPPDISKSEVRFSVEGGSIRWGLSAIK 824 Query: 844 GVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG A I+E+ + + SL D C R+ + LN+++LESL+ +GA D G SR +LL Sbjct: 825 NVGEAAAEAIVESRKKRGSYHSLFDLCLRISGRTLNKKILESLIKSGACDSLGRSRKELL 884 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKITLEKFSVENSSVRFENEQRVL 959 +SL K R + +N+F E+ F +D+ + K ++R E+ +L Sbjct: 885 ESLPAALSAGSITSKERLSGQQNLF--EEHNFIDPTDRQSSAKGEDYPLNIRLHWEKELL 942 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRL--AAMVVSKQQKKTRKGSR 1014 G Y S HPLD + +R E +++++ +N RL M+ ++K ++K + Sbjct: 943 GTYLSSHPLDEWMSWIRLF----QNEPISSLKELADNSRLYVPGMITHIEKKTSQKSKK 997 >gi|169633232|ref|YP_001706968.1| DNA polymerase III, alpha chain [Acinetobacter baumannii SDF] gi|169152024|emb|CAP00899.1| DNA polymerase III, alpha chain [Acinetobacter baumannii] Length = 1187 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1018 (38%), Positives = 594/1018 (58%), Gaps = 58/1018 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + +++ D+ PA+A+TD +NL +A++F GI+PI Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ + LL + G++ L E+VSR ++ +G+Q Sbjct: 63 LGSTIRLNDAQH---------------RATLLAMSDIGWKGLTEIVSRGFI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E + +++L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 106 PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTR 163 Query: 189 HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 DR E +Q LA + + +VA N+ F+ +ED+EAH+ + +A V++ Sbjct: 164 T---DRPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDR 220 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------I 296 RPR+ +P+ Y K EM+ +FSD+P A+ENT +IA+RC+ L++ LP + I Sbjct: 221 RPRLYSPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI 280 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + + + KE E R + +E R + + Y +R+D+E+ +I +M F GY Sbjct: 281 DTYFEHLSKEGLKE-RLNYLYPVEKRGEDWPEIR----KPYDERIDYEVGIILKMGFPGY 335 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 336 FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ Sbjct: 396 DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530 K++P P AI + + ++ + +PS + E++ KLEG+ R+ HA Sbjct: 456 KMVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAG 514 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + Sbjct: 515 GVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574 Query: 591 QRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + D +S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA V Sbjct: 575 KNSDSNDPLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFV 634 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+D I + +R +G E +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L Sbjct: 635 SLYRPGPMDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTL 693 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAA Sbjct: 694 GGADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAA 753 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA+++Y TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN Sbjct: 754 AYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYH 813 Query: 828 FKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885 F D++ I Y L AIKGVG + ++++ + P+ L DFC R+D KK+N+R LE+L Sbjct: 814 FHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEAL 873 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944 + AGALDC G R L+ L + A+ NR + ++F E+ ++ +S Sbjct: 874 IRAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWS 933 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 E VR + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 934 DE---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVL 988 >gi|303231851|ref|ZP_07318562.1| putative DNA polymerase III subunit alpha [Veillonella atypica ACS-049-V-Sch6] gi|302513458|gb|EFL55489.1| putative DNA polymerase III subunit alpha [Veillonella atypica ACS-049-V-Sch6] Length = 1135 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1032 (38%), Positives = 620/1032 (60%), Gaps = 29/1032 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + +QPA+AITD N+++A+ F ++ A GI+PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELEQPALAITDHGNMYAAIYFYKECVAQGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + L +G++ + ++LL T EGY+ L+++VS+ + R Sbjct: 64 IGCEVYVTEGSRLDKP-EGRSR-ERLKHLILLAETMEGYRNLVKIVSKAST-EGFNYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L++ ++G+I L+ G + + ++ A + + + + FG D ++ +Q H Sbjct: 121 ADHDLLRQY-SKGIIALSACIQGEVPQYILQDNMDGARRAVEWYIETFGKDNFFLEIQNH 179 Query: 190 RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + R QV+ QLA + L +VA+N+ ++ ++D +A D+ + + ++ DR + Sbjct: 180 GLPEELRAQQVLCQLADEYGLGIVASNDFHYVMKDDADAQDIRVCIQTGRRRAEVDRLKF 239 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +F +P ALENTV+IA RC+ LP F D+ + E Sbjct: 240 PNDEFYLKSGDEMAELFGHIPGALENTVKIADRCNVEFNFDEHHLPHF------DVPEGE 293 Query: 308 ENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ + V E+ RL G +++ ++RLD+EL+VI M F YFLIV D++++ Sbjct: 294 TSKTYLRKVCEREIPRLY------GDTSEELKKRLDYELDVIGTMGFEDYFLIVWDYVRY 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++ Sbjct: 348 AREHDILVGPGRGSAAGSVVAYLLGITGLDPLQYDLLFERFLNPERVSMPDIDIDFCYEK 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E I YV KYG RV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ Sbjct: 408 RGEAIDYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 ++L+ + DP+V L + QKLEG+ R++STHAAG+VI PL VP+ Sbjct: 466 ITLEKALKGKDLKALYDTDPNVKELFDFGQKLEGIARNSSTHAAGVVISADPLDDHVPV- 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 ++ + VTQ++ IE+ GL+K DFLGL+TLT++ +L + A RG+ +DL IP DD Sbjct: 525 QNSNEEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 LLT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + +V + + Sbjct: 585 KAACELLTKGDTSGVFQLESDGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK + Sbjct: 645 RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + Q+E FI G+ NGI ++IA +F+LL FA YGFNKSH+AAYA I+YQTA++K HY Sbjct: 705 VLKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHY 764 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 EF+AA+MT M N++K+ + ++ N+Q++ P VN F V D+ I + L IK Sbjct: 765 FPEFMAATMTSFMQNMDKLTYYINACKKHNVQVLGPDVNHSLRSFAVQDDAIRFGLGGIK 824 Query: 844 GVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG R I E A+ + S+ DFC RVDSK +N+R+LESL+ GA+D F +R QLL Sbjct: 825 NVGDNAIDRLIAEREANGLYTSITDFCRRVDSKVVNKRLLESLIRCGAMDGFEENRNQLL 884 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 ++ Q +K+ ++F E D I + + + ++E+ GFY Sbjct: 885 HMYESAQAVGAKQQKDAAMGTMSLFG-ESTDDVDMIPVPNLPDLSEDDKLKDEKDYTGFY 943 Query: 963 FSGHPLDVYKPILRKMGIKG-YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 +GHPL Y L+ + G E+ G I ++ + + T++G + + Sbjct: 944 ITGHPLQGYNKELKGLFELGQLLENPERFDGQTITFGGLIAERGDRPTKRGDVMSILRIE 1003 Query: 1022 EPAKEYEANFFP 1033 + + + FP Sbjct: 1004 DYSGSAQVVAFP 1015 >gi|223039577|ref|ZP_03609864.1| DNA polymerase III subunit alpha [Campylobacter rectus RM3267] gi|222879148|gb|EEF14242.1| DNA polymerase III subunit alpha [Campylobacter rectus RM3267] Length = 1328 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1003 (38%), Positives = 596/1003 (59%), Gaps = 48/1003 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA + + + + A AITD N+F A++F + GI+P+ Sbjct: 7 FTHLHLHTEYSLLDGANRIKELAKTLKSQGVKAAAITDHGNMFGAIDFYKTMKNEGIKPL 66 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I + L G + L+ GY+ L+ L S Y+ + R Sbjct: 67 IGIEAYIHNGEEL-----GDKSTKQRFHLCLIAKNEIGYKNLMYLSSMSYI-EGFYYYPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI-------DRAFFFNSS--QVAEKRLLTFKKLFGDR 181 I L+E +EG+I + G + +R F + + A++ L +K +FGD Sbjct: 121 INKKILKE-HSEGIICSSACLQGEVNWNLNQSERNLRFGAGGYEAAKEAALWYKDVFGDD 179 Query: 182 LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ + RH D+ R + ++++LA + ++ATN++ + ++ AH+V M +A + ++ Sbjct: 180 FYLEIMRHGIGDQRRIDDEILRLAKELNIKVIATNDTHYTFKQRAGAHEVFMCIAMNKLL 239 Query: 241 SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---- 295 +R R + + Y+K ++M +F+D+PEA+ NT EI +C +++ P F Sbjct: 240 DDPNRLRHSVHEFYVKTPAQMSELFADIPEAVTNTQEIVDKCDLTIKLGDATPPNFKFTL 299 Query: 296 ---IEKECDDIQKEEENELRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 E+ + ++ + N +V GLE RL ++YR RL E+ Sbjct: 300 EYAAERNLSLPEPDKRYSIPNDSVLFEHECRQGLEDRLK---FVPAERHEEYRTRLQREI 356 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 ++I +M F GY +IV DFI AKK +PVGPGRGS AGS+ AY+L ITD+DPL ++LLFE Sbjct: 357 DIINKMNFPGYMMIVWDFINEAKKRGVPVGPGRGSAAGSLVAYSLKITDLDPLPYNLLFE 416 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPD D+DFCQ+RR E+I YV KYG VAQ+ITFG L AK +RDV R Sbjct: 417 RFLNPERVSMPDIDVDFCQNRRGEIIDYVIEKYGKFNVAQVITFGKLLAKGVIRDVARVC 476 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525 MPY++ D + KLI ++ + QA + + E + + +R+ + + LEGL R+A Sbjct: 477 DMPYAEADAMAKLILDEIGITLE-QAFEKEPKIGELIATNSNANRIWKFALDLEGLNRNA 535 Query: 526 STHAAGIVIGDRPLSQLVPMYR--DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+VI + L P++R + D VTQ+++K++E LIKFDFLGLKTLT++ Sbjct: 536 GMHAAGVVISNEELWNKTPLFRQPNAEEDHFVTQYSLKYLEDVDLIKFDFLGLKTLTVID 595 Query: 584 KSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ + +R G ++ + +D +TY +++ TLG+FQ+ES GM++ M+PDC ED Sbjct: 596 NAVKLVKKRFGKEIIWEQVNKNDPKTYETISSGQTLGLFQIESEGMQKVGADMRPDCFED 655 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIA++SLYRPGP+D I + RK+G E I I P ++P+L+ T GVI+YQEQVMQI Q + Sbjct: 656 IIAMISLYRPGPMDLIPDFIKRKHGLEPITYIFPELEPILEPTYGVIVYQEQVMQIVQTI 715 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 G+SL AD++RRAMGKKIKEEMD+ K +FI GA G+ + +FEL+ FA YGFN Sbjct: 716 GGFSLGGADLVRRAMGKKIKEEMDRLKGKFIEGAQAQGLDGKKSGELFELILHFASYGFN 775 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSHAAAY +++QTA++KT+YP EF+AA +T E N +KI ++ + ++ +I I+PPSVN Sbjct: 776 KSHAAAYTYVTFQTAYLKTYYPAEFMAALITSEETNADKISRYIDECKRLDIAILPPSVN 835 Query: 823 TPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878 +F V G + I Y L AIKGVG +I+E A F ++DF SRVD+ K+N Sbjct: 836 KSAKEFSVVSEGGKDAIIYGLGAIKGVGGAAIENILEEQAKGEFKDIDDFVSRVDNFKVN 895 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 ++V ESL+ +G+ D FG +R +L +LDNI + + + N E++F ++ + K Sbjct: 896 KKVFESLIKSGSFDSFGLTRKMMLNNLDNIVEACKNAATIKKNAAESLFGDDESMATVKT 955 Query: 939 TLEKFSVE---NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +L + E + ++FE E +G Y SGHPLD Y+ + K+ Sbjct: 956 SLVRDDSELELKTKLKFELES--VGIYLSGHPLDEYREQISKI 996 >gi|219685116|ref|ZP_03539936.1| DNA polymerase III subunit alpha [Borrelia garinii Far04] gi|219673212|gb|EED30231.1| DNA polymerase III subunit alpha [Borrelia garinii Far04] Length = 1161 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1014 (40%), Positives = 617/1014 (60%), Gaps = 32/1014 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A GI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKVGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFFKKHDDLGKMSY----HLILLAKNEIGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ ++V+ + +PL ATN+S +++ ED A D+++ + S ++R + Sbjct: 195 HGIKDQDIVNERLVEYSRKLGVPLAATNDSHYVNREDAVAQDIIVCIGTGAKKSDENRLK 254 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQ 304 + T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + + Sbjct: 255 METNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEFNTLG 314 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L + GL+ R + R +EL+VI RM F GYFLIV DFI Sbjct: 315 EY----LEYLTLEGLKFRYKT-------LTSKIKDRAFYELSVIIRMGFEGYFLIVWDFI 363 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC Sbjct: 364 KFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 423 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP+ P Sbjct: 424 EGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIPDGPK 483 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 VSL+ + DD+ +E + P L++ + LEG+ RHASTHAAGIVI PL+ VP Sbjct: 484 --VSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLTDYVP 541 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602 +Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + IP Sbjct: 542 LYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNIP 599 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 600 DNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQFI 659 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K G + I HP + +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK + Sbjct: 660 AAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKE 719 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +EM++ K F+ GA + G K +A IFELL F+ YGFNKSHAAAY++I+YQTA++K + Sbjct: 720 DEMNEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKAN 779 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L AI Sbjct: 780 YPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLNAI 839 Query: 843 KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K +G I+ E + + S EDF RVD K +N++ LES + +G D +R L Sbjct: 840 KNLGEIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKTL 899 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSVENSSVRFENEQRVL 959 ++LD + + + N+ ++F KG + F + S E E+ +L Sbjct: 900 FENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIQQNFNYQAFKEYSYSELLEFEKELL 959 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 GFY SGHPLD YK + + +AT + + ++ + ++ S + +T++ + Sbjct: 960 GFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSVVQFSGILNSVKVIQTKRNN 1013 >gi|295100819|emb|CBK98364.1| DNA polymerase III catalytic subunit, DnaE type [Faecalibacterium prausnitzii L2-6] Length = 1170 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/1055 (36%), Positives = 591/1055 (56%), Gaps = 62/1055 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA ++ ++D++ Q AIAITD ++ ++F + A AGI+P+ Sbjct: 14 FVHLHIHTEYSLLDGACRIDQLMDRVKECGQSAIAITDHGVMYGCVQFYKAAKKAGIKPV 73 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + N+ ++LL GY+ LI++VS ++ +G S Sbjct: 74 IGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAAFV--EGFYSKP 127 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 L E EGLI L+ +G I +A + A+ L ++ LFG Y+ LQ H Sbjct: 128 RVDKQLLEQYHEGLICLSACLAGEIPQAILAGDYERAKSTALWYQDLFGKGNYYIELQDH 187 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D Q+++LA +P+ ATN+S +L ++D + +L+ + + DR Sbjct: 188 GLEEDTIVLPQLIKLARETGIPMAATNDSHYLRKDDAKMQSILLCIQTGKTIQDADRMEF 247 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP-----------RFI 296 D Y+K EM +F+ +PEA NT +IA +C+F +P F Sbjct: 248 RTDEFYVKTTDEMYELFAMVPEACANTQKIADQCNFDFDFGHTKIPYYKAPNGMDNQEFF 307 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 EK C D GLE R Q + RL +E+ V+ M ++ Y Sbjct: 308 EKLCWD---------------GLERRYGSDV------PQSNKDRLTYEIGVVKSMGYTNY 346 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 +LIV D+I +AK IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMP Sbjct: 347 YLIVWDYINYAKSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMP 406 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC +RR EVI YV KYG + VAQI+TFG++ A+ A+RDVGR + MPY VD + Sbjct: 407 DFDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGMPYQSVDVVA 466 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 K +P + + +A+ + +DP V L++ + K+EG+ RHASTHAAG+VI Sbjct: 467 KQVPMELKMTLK-RALEVSPELKRMYDSDPQVTELIDTALKVEGMPRHASTHAAGVVITP 525 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 P +P+ + LPVTQFNM IE+ GL+K DFLGL+TLT+++ + + ++ Sbjct: 526 EPTDYYLPLATN--DGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAEAAVQKKDPSF 583 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + + +DD TY +L T G+FQLESSGM+Q L G+QP +ED+IAL+SLYRPGP+D Sbjct: 584 SIQKLDYDDAATYKMLGQGETEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMD 643 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +I Y ++ +KI P + +L T G I+YQEQVMQI + L+G+S +AD +RRA Sbjct: 644 SIPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRA 703 Query: 717 MGKKIKEEMDKQKERFISGASK----------NGISKTIAVNIFELLAKFADYGFNKSHA 766 M KK M+ ++E F+ G ++ NGIS+ +A I++ ++ FA Y FNKSHA Sbjct: 704 MSKKKHAVMEAEREHFVHGCTEPGHECPGCVANGISEEVANEIYDEMSSFASYAFNKSHA 763 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 A YA +++QTA++K HYP EF+AA +T +DN +K+ ++ + + ++++PP VN Sbjct: 764 ACYAYVAFQTAYLKCHYPSEFMAALLTSVLDNTDKVIEYSGECARLGLKVLPPDVNISNG 823 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F + +I + L A+K VG ++E +KP+ SL DFC R+ +LNRR +E L+ Sbjct: 824 GFTADNGKIRFGLNAVKNVGRNLIERVVEERKEKPYSSLYDFCKRMHGTELNRRAVECLI 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF----SDKITLEK 942 AGA D G +R L++++D I K + + ++F+ G +D ++ Sbjct: 884 KAGAFDSMGVNRHSLVEAVDGIIKSVESDSRRNLEGQLDLFSVMSGESQTADTDSYEIKP 943 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE----ESVATIRGNNIRLA 998 F + + + E+ V G Y SGHPLD Y+ + + E + GN++R+ Sbjct: 944 FPEYSHTELLQQEKEVSGLYLSGHPLDAYREQSARFASNSIKELTGEDAHKLDGNHVRIV 1003 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 VV + T+ + + + + + E FP Sbjct: 1004 CTVVKNRMMTTKSNTMMAFTSVEDLTGTMEVIVFP 1038 >gi|304406873|ref|ZP_07388528.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] gi|304344406|gb|EFM10245.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] Length = 1087 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1040 (39%), Positives = 604/1040 (58%), Gaps = 42/1040 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA + ++ + A A+A+TD ++ A+ F + GI+PI Sbjct: 11 FVHLHVHSEYSLLDGAARVRDLAARAAELGMDALALTDHGVMYGAIPFYKACKENGIRPI 70 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + + P + ++LL GY+ L++LV+ + L+ R Sbjct: 71 IGCEVYMTAGSRFDKGTRKENP---IYHLILLAKNETGYRNLMKLVT-IGQLEGLHYRPR 126 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I + L EG+I L+ G + + + A+ L +K +FGD Y+ LQ H Sbjct: 127 IDMESLAA-HAEGIICLSSCLGGEVPQHLLHGRPEEAKAAALRYKAIFGDDYYIELQDHG 185 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ + +++ LA + L ATN++ +L ED DVL+ + V +DR ++ Sbjct: 186 IIEQKKVMPELIALAREIGVKLAATNDAHYLQPEDATMQDVLICIGTGKTVEDEDRFKIA 245 Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D YLK+ EM ++F +PEA+ NT EIA +C L + LP F + Sbjct: 246 SDQLYLKSGEEMAALFRHVPEAIANTAEIADKCRLELSLGRAALPTFRPVPEGMSSADFL 305 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL GL R A G ++RLD+EL VI RM +S YFLIV DFI++A Sbjct: 306 AELCRD---GLASRYA------GAPEPAAQERLDYELAVIERMGYSDYFLIVWDFIRFAH 356 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AY L ITD+DPL+ LLFERFLNP+R+SMPD DIDF +RRD Sbjct: 357 ERGIRTGPGRGSSAGSLVAYTLNITDVDPLKHKLLFERFLNPERVSMPDIDIDFNDERRD 416 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYG E VAQIITFG++ A+AA+RDVGRA+ +P+ +VDR KLIPN + Sbjct: 417 EVIAYVSAKYGEEHVAQIITFGTMAARAAVRDVGRAMNVPFGEVDRAAKLIPNQLGITLE 476 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ REA P + LL+++ K+EG+ RHASTHAAG+VI PL+ VP+ Sbjct: 477 -EALRISPELREASAKQPRTEALLKMAMKVEGMPRHASTHAAGVVISQEPLTHYVPLQAG 535 Query: 549 V-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 R+ L TQ++M+ +E GL+K DFLGL+TL++++++L ++ + G +D I DD Sbjct: 536 TDRTAL--TQYSMENLEAVGLLKMDFLGLRTLSIVERTLRWVKELYGRDIDFRTIADDDP 593 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY +L T GIFQLES+G+R+ L+ M+P EDI+++++LYRPGP++ I Y K+ Sbjct: 594 LTYEMLGRGETTGIFQLESTGVRRVLKEMKPSVFEDIVSVLALYRPGPMEFIPKYIQGKH 653 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+ ++ HP ++P+L +T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E +D Sbjct: 654 GQVEVEYPHPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKKREVLD 713 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +++ F+ G+ K G ++ A +++++ +FADYGF ++HAAAY V+++QTA++K HYPV Sbjct: 714 EERAHFVGGSLKQGYAEADANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPVP 773 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF----KVGDNR--IYYSLA 840 F+A+ + N K ++ R+ + ++PP VN V F + G+ R I + LA Sbjct: 774 FMASMLASVTGNQRKTAEYVDACRRMGMDVLPPDVNESGVTFTPVHRAGEARGAIRFGLA 833 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 A+K VGT IM+ A++P+DSL D C RVD + +N+RV+ESLV +GA D R Q Sbjct: 834 AVKNVGTQAIESIMKERAERPYDSLTDMCRRVDLRVVNKRVMESLVQSGATDSLPGHRSQ 893 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-FENEQR-- 957 LL +LD I A K+R N+F F + I E VE VR F Q+ Sbjct: 894 LLGALDEIVDAAAKWRKDREELQINLFG-----FDEVINWE---VELPDVRPFSTGQKLE 945 Query: 958 ----VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 +LG Y SGHP+D + L GI + G MVVS + TRKG Sbjct: 946 LERELLGLYLSGHPIDAVEEALSPHGIDRLVDLAEAEDGTLAVFPIMVVSVKPMMTRKGQ 1005 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + ++ + EA FP Sbjct: 1006 AMAFLEVEDRIMRVEAVAFP 1025 >gi|45656127|ref|YP_000213.1| DNA polymerase III subunit alpha [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599360|gb|AAS68850.1| DNA polymerase III alpha subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 1173 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1041 (38%), Positives = 610/1041 (58%), Gaps = 42/1041 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H++YS+L+GA+ + ++ + ++A+TD N+F A+EF +A GI+PI Sbjct: 8 FAHLHLHTNYSMLDGAIRIKELMQHVKECGMSSVAMTDHGNMFGAVEFYNEAIKQGIKPI 67 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + + + T K ++LL EGY+ LI L S+ Y K++ R Sbjct: 68 IGSEFYVS-PNRKQETEMVKIADGNAYHLILLAKNEEGYKNLIRLSSKSYTEGFYKKA-R 125 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN----SSQVAEKRLLTFKKLFGDRLYVNL 186 I L +EGL+ LT +G ++R S Q+A K F+K + Y+ + Sbjct: 126 IDYDLLDR-HSEGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRK---EDFYMEI 181 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ QV + +PLV TN+S FL + D EA D+L+ + ++ Sbjct: 182 QNHGIPEQMTVAKQVYEFGKKTGIPLVVTNDSHFLKKNDQEAQDILLRIGMQKRITDPME 241 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + Y+KN EM IF ++PEA NT+EI+ + + LQ +LP F E D Sbjct: 242 FGFNGEFYVKNGDEMAKIFPEIPEAFYNTLEISNKVNLKLQFGNYLLPEFEVPEGYD--- 298 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADF 363 A + LE + +G I + Y + + ++R+ FELN I MKF+GYFLIV D+ Sbjct: 299 ---------ADSYLEKLIWEG-IERKYLNLSPEIKERVIFELNTIKNMKFAGYFLIVQDY 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +AK+N IPVGPGRGS AGS+ AYAL IT+++PL+ +LLFERFLNPDR MPD D DFC Sbjct: 349 INYAKRNGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDIDTDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+EVI Y++ +YG E+V QIITF SL AKAAL+DV R L +P+ + + + K PN Sbjct: 409 VERREEVINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKAFPNKL 468 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +S +A++ S + D ++ I+Q+LEG YR HAAG+VI PL ++V Sbjct: 469 GMSIS-EALSTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYPLEEVV 527 Query: 544 PMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 P+ + P VTQ++ +E GLIK D LGLK LT L ++ + Q RG++++ Sbjct: 528 PLSTVAEKEKPGVRAIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIEQRRGIRIN 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L I +DD TY LL TLGIFQLES+G+ + Q ++I+AL++LYRPGP+ Sbjct: 588 LDEISYDDANTYSLLRKANTLGIFQLESTGITDLVAKSQVSNFDEIVALIALYRPGPMGE 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 ++ Y +RK+GK+++ HP +P+LKET GV +YQEQVM I++++ G+S+ ++DVLR+ Sbjct: 648 GMLDEYLDRKSGKKQVTYPHPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDSDVLRK 707 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AM KK + MDK K +F+ GA K GI + +A ++FE L +F YGFNKSH+ AYA+I+YQ Sbjct: 708 AMAKKKADLMDKLKVQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYAIITYQ 767 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TA++K +Y +E+L A + + I K+ +AR+ IQI+ P V+ F V DN Sbjct: 768 TAYLKANYTIEYLTALLASDHGKTTDIVKYINNAREMGIQILNPDVSESQASFSVIDNTT 827 Query: 835 IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+A+KGVG T A I++A F +L+DF +D++ +N++V E+L+ AGALD Sbjct: 828 IRFGLSAMKGVGETAANSIIQARTKVGSFRTLQDFALNIDTRLINKKVFEALIQAGALDS 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDKITLEKFSVE-NSSVR 951 FGY+R L +S+D+I +AQ E+ R N+ + ++F +E+ +FS + L K ++E + Sbjct: 888 FGYTRKCLFESVDSILTFAQK-EQERANEGQFSLFGNEESSFS--LNLPKDALEWEIDEK 944 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + E+ + G Y SGHPLD Y+ L+ + E+ G + +A ++ SK K +++ Sbjct: 945 LKREKAIAGLYLSGHPLDKYEKQLKSLKTIPIEKFDDLKSGTKVEVAGVISSKNIKLSKR 1004 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 + E E F Sbjct: 1005 NEEFANFKLEDRTGEIECVAF 1025 >gi|251798458|ref|YP_003013189.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2] gi|247546084|gb|ACT03103.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2] Length = 1220 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1027 (38%), Positives = 603/1027 (58%), Gaps = 12/1027 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA + +++ + A A+A+TD ++ A+ F + A GI+P Sbjct: 7 SFVHLHVHSEYSLLDGAARIRDLVARAAEQGMKALALTDHGVMYGAIPFYRACLARGIKP 66 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + P + ++LL GY+ L++LVS +L + Sbjct: 67 IIGCEMYFTAGSRFEKGTRKDNP---IYHLILLAKNETGYRNLMKLVSIGHL-EGFHYKP 122 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L E +EGL+ L+ G I + + + A + +K++FGD Y+ LQ H Sbjct: 123 RIDPEVL-EAHSEGLVCLSSCLHGEISQHLLHDRREEALTAAMRYKRIFGDDFYLELQDH 181 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D+ + + +++LA + L ATN+ +L+ ED DVL+ + V DR ++ Sbjct: 182 GMLDQKKVAAAMIELARETGIKLTATNDVHYLTPEDAAVQDVLICIGTGKSVDDTDRMKM 241 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D Y+K+ EM +F +PEA+ +T EIA +CS L LP F Sbjct: 242 GTDQLYMKSGEEMELLFRHVPEAIRHTAEIADKCSLELTFGRAALPVFRPVPGGMTSTAY 301 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL +A L Q + Y Q RL +EL+VI M FS YFLIV DF+++A Sbjct: 302 LAELCRSGLASRYAGLPQWSEDPAYREQ-AEARLAYELSVIENMGFSDYFLIVWDFVRFA 360 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GPGRGS AGS+ AY L ITD+DPL++ LLFERFLNP+R++MPD DIDF +RR Sbjct: 361 HEQGIRTGPGRGSSAGSLVAYVLRITDVDPLKYKLLFERFLNPERITMPDIDIDFNDERR 420 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV KYG E VAQIITFG++ AKAA+RDVGRA+ +P+++VDR K+IPN H Sbjct: 421 DEVIAYVSAKYGDEHVAQIITFGTMAAKAAVRDVGRAMNVPFAEVDRAAKMIPNQ-LHIT 479 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ REA P D +++++ K+EG+ RHASTHAAG+VI PL+ VP+ + Sbjct: 480 LEEALRISEGLREACQRQPRTDAMIKMALKVEGMPRHASTHAAGVVISGGPLTDYVPL-Q 538 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606 +TQ++M+ +E GL+K DFLGL+TL+++++SL ++ G ++D +P +D Sbjct: 539 AGSERTALTQYSMEHLEAVGLLKMDFLGLRTLSIVERSLAWVKGLYGKEIDFRKVPDNDP 598 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L T+GIFQLESSG+R+ L+ M+P EDI+++++LYRPGP++ I Y K+ Sbjct: 599 DTYAMLGRGETMGIFQLESSGVRRVLKEMKPSEFEDIVSVLALYRPGPMEFIPNYIQGKH 658 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G + HP ++P+L +T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E +D Sbjct: 659 GLAPVKYPHPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKKREVLD 718 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +Q+ F+ G+ G + A +++++ +FADYGF ++HAAAY V+++QTAW+K HYP+ Sbjct: 719 EQRAHFVKGSVSEGYTSEDANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAWLKAHYPIP 778 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+A+ + N K ++ + R+ I+++PP VN V F + + + LAAIK VG Sbjct: 779 FMASMLASVTGNQRKTAEYVDECRRMGIEVLPPDVNESGVTFTPVEGAVRFGLAAIKNVG 838 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I + ++PFDSL D C RVD + +N+RVLESL+ AGAL+ R Q L +L+ Sbjct: 839 TQAIEAIEKERRERPFDSLLDLCRRVDLRVVNKRVLESLIQAGALESLPGHRAQQLAALE 898 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + A K R +F ++ D + L ++ + E E+ +LG Y SGH Sbjct: 899 ETVEAALKWRKEREELQIELFGFDEVQNWD-VELPDIRPYSTGEQLELERELLGLYLSGH 957 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 PLD + L +G+ + E G + A VVS + +KG+ +G++ + Sbjct: 958 PLDAVEEQLEPLGLDRFIELGEAAEGAAAFIGARVVSLKPFTNKKGNAMGFIEIEDRVMR 1017 Query: 1027 YEANFFP 1033 E FP Sbjct: 1018 AEGVVFP 1024 >gi|90407915|ref|ZP_01216090.1| DNA polymerase III subunit alpha [Psychromonas sp. CNPT3] gi|90311006|gb|EAS39116.1| DNA polymerase III subunit alpha [Psychromonas sp. CNPT3] Length = 1170 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1053 (38%), Positives = 602/1053 (57%), Gaps = 54/1053 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ AA PAIA+TD N ++F A +AG++ Sbjct: 10 PKFIHLRVHSDFSMVDGLTKVKALIANTAAMNMPAIALTDQTNFCGLVKFYTAAHSAGVK 69 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P++G +D +Q + Q + I L EGY+ + EL+S+ Y +G Sbjct: 70 PLVG--VDFWVQSEILEKEQFR--------ITALAMDNEGYKNITELISKAYF--RGHVG 117 Query: 129 VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R L WL+E G+I+L+G G + + ++A + ++ F R Y+ L Sbjct: 118 GRAILDQDWLKEY-NHGIILLSGAKEGDLGKMLLKGHFELASEITQFYQTYFPQRYYLEL 176 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R R + ++ A H+LP+VATN +F ++ ++AH + + + + + R Sbjct: 177 IRTGRVKEETYIHHALEWAEKHQLPVVATNQVVFSNKTLFDAHVIRVCINQGYTLGDERR 236 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE--KECDD 302 P + + YL++ EM +FSD+PEAL+N+VEIA+RC+ L++ LP F K +D Sbjct: 237 PHDYSEEQYLRSPEEMCELFSDIPEALQNSVEIAKRCNVTLRLGECFLPDFPTQGKPIND 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E + N A LE + + Y +RL EL VI M F GYFLIV + Sbjct: 297 YFIEVSRQGLN---ARLEFLFDKNSADFAQIRAPYDERLRIELEVINSMGFPGYFLIVME 353 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL+ LLFERFLNP+R+SMPDFDIDF Sbjct: 354 FIQWSKDNGIPVGPGRGSGAGSLVAYALNITDLDPLKLDLLFERFLNPERVSMPDFDIDF 413 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VD + KL+P Sbjct: 414 CMERRDEVIDHVAQLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDSISKLVPPT 473 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P +S +A ++ R +E V L+++ + LEG R+A HA G+VI ++ Sbjct: 474 PGMTLS-KAFEEEPRLQERYDGSEEVRDLIDMCRTLEGTIRNAGKHAGGVVISPTTITDF 532 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGVK-VD 597 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++Q +LD + RG + ++ Sbjct: 533 APLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMANAHKSDRGEEAIE 592 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I + + + LL T +FQLES GM+ + +QPD ED+IALV+L+RPGP+ + Sbjct: 593 IERISLTEPKCFELLKRYETTSVFQLESRGMKDLIRRLQPDSFEDMIALVALFRPGPLGS 652 Query: 658 IVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N RK+G+E + H + +L T G+I+YQEQVMQIAQ+LSGY+L A Sbjct: 653 GMVDNFIERKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQILSGYTLGGA 712 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F GA NGI +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 713 DMLRRAMGKKKPEEMAKQRSTFEQGAINNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYA 772 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT WMKT YP F+AA ++ +MDN +K+ + ++ + + PP VN F V Sbjct: 773 LVSYQTLWMKTFYPAYFMAAVLSADMDNTDKVVILVSECQRMGLNLCPPDVNEGQFKFNV 832 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 N RI Y + A+KGVG I+EA + F L DFC+RVD K +R++E L+ A Sbjct: 833 DKNLRIIYGIGAVKGVGEGPINAIIEARTIGGDFRDLFDFCNRVDLKHCGKRIIEKLILA 892 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD G R L+++L A ++ + ++F +T + +EN Sbjct: 893 GALDNLGPHRAALMENLPLALASATQHKRAESFGQCDLFG--------VLTTDSADIENR 944 Query: 949 SVRFE---------NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 + E E+ LG Y +GHP++ Y+ +R K + + RG N R+A Sbjct: 945 FSKVEKWPEKQWLAGEKETLGLYLTGHPINQYEAHIRAFHCKPIVDLSSDRRGQNSRIAG 1004 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +++ + T+ G R+G +T + + F Sbjct: 1005 LIIGLRVMVTKAGKRMGILTVDDRTARIDITIF 1037 >gi|163782295|ref|ZP_02177293.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159882328|gb|EDP75834.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 1167 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1071 (39%), Positives = 615/1071 (57%), Gaps = 74/1071 (6%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 E FVHL +H+ YSLL+GA+ + +++ K A+ ++D NLF + +F + Sbjct: 3 EGVKDFVHLHLHTQYSLLDGAIKIEDLVKKAKEFGYRAVGMSDHGNLFGSFQFYKALKKE 62 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLL 122 GI+PIIG + +G T ++L+ G + L +L + Y Sbjct: 63 GIKPIIGMEAYFTTGSRFDRKTKGSEDNITDKYNHHLILIAKNDTGLKNLFKLSTLAY-- 120 Query: 123 DQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 +G RI L++ G EGLI LT G N +Q AE+ + FK +FG+ Sbjct: 121 KEGFYYKPRIDYELLEKYG-EGLIALTACLKGVPTYYASINETQKAEEWVKKFKDIFGED 179 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 L++ LQ + ++ ++ ++++A + + L+ATN+S +L+ ED EAH LMA+ V Sbjct: 180 LFLELQSNDIDEQAVANRNLIEIAKKYGVELIATNDSHYLNPEDREAHTTLMAIQMKRTV 239 Query: 241 SQ--KDRPRVTPDHYLKNRSEMV-----SIFSDLPEALENTVEIARRC--SF-ILQVHAP 290 K R D E V F AL NT+E+ R SF + + Sbjct: 240 HDMTKGGFRCANDGLHFASPEEVWRKFEGKFDGWERALLNTLEVMDRTADSFDLFETSGY 299 Query: 291 ILPRFIEKECDDIQKEE--ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 +LP + + K+ E+ LR+ AV GL+ R+A+G + ++Y +RL+FEL+VI Sbjct: 300 LLPEY------QVPKDTTLEDHLRDLAVRGLKQRIAKG---QAKDTREYWERLEFELDVI 350 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 RM F+GYFLIV DFI WAK N++PVGPGRGS AGS+ AY++ ITD+DP+R LLFERFL Sbjct: 351 NRMGFAGYFLIVQDFINWAKNNSVPVGPGRGSAAGSLVAYSIGITDVDPIRHGLLFERFL 410 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DFCQD RD VI YV++KYG E VAQIIT+ ++AK LRDV RAL +P Sbjct: 411 NPERVSMPDIDVDFCQDNRDRVIEYVKDKYGRENVAQIITYNVMKAKQTLRDVARALGLP 470 Query: 469 YSQVDRLCKLIPNDPAHPVSLQA---------------------IADD-SRFREARLADP 506 YS D+L KLIP L I D+ ++FR+ + Sbjct: 471 YSTADQLAKLIPQGDVQGTWLSLEEMYSTPMEVLKERYGAHRGDIEDNVNKFRKLCKENA 530 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 +D+L++I+ +LEGL RH S HAAG+VI +PLS L+P++ D R TQF+M +E Sbjct: 531 EIDKLVQIALRLEGLTRHTSLHAAGVVIAPKPLSDLIPLFYD-RDGAVATQFDMTKLEDM 589 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GL+K DFLGLKTLT L+ D + + RG +VD +P DD + + LL T G+FQLES Sbjct: 590 GLLKMDFLGLKTLTELKGMRDLVKERRGEEVDFLSLPMDDPKVFELLQDGNTTGVFQLES 649 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683 GM++ L+ ++PD +DI+A+++LYRPGP+ + +V Y NRK+GKE + P ++ +LK Sbjct: 650 RGMKELLKRLKPDSFDDIVAVLALYRPGPLKSGLVDRYINRKHGKEPVDYPFPELEEVLK 709 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET GVI+YQEQVM+++++L+G++ EAD LR+A+GKK K+ M++ +E+FI G+ + G + Sbjct: 710 ETYGVIVYQEQVMRMSRVLAGFTPGEADTLRKAIGKKKKDLMEQMREKFIKGSVERGFPE 769 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 ++E + KFA Y FNKSH+ AY ISY TA+MK HYP EF A +T E N K Sbjct: 770 DKITKLWEDIEKFASYSFNKSHSVAYGYISYWTAYMKAHYPAEFFAVKLTTE-KNDNKFI 828 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862 +DA+ +I+PP VN V F + G+ + + + IKGVG A+ I EA D+ F Sbjct: 829 NLIKDAKIMGFEILPPDVNRSDVGFIIEGEREVRFGIGRIKGVGEEAAKAITEARKDREF 888 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 ++DF SRVD +K+N++VLE L+ AGA D G R +LL L + K + +N Sbjct: 889 RGIQDFVSRVDGRKVNKKVLECLIKAGAFDFTGTKRDELLDRLSSSGKNMSSLAQN---- 944 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++F GT K K + N +R E E V+GFY SGHPLD Y+ +L Sbjct: 945 --SLFG---GTQKKK----KLDI-NDILRMEKE--VIGFYISGHPLDKYEKLLAGK-YTP 991 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 EE +G+ + LA V + Q KKTR GS + + + + E FP Sbjct: 992 IEELEGIGKGSTLTLAGAVSNLQVKKTRNGSYMAILNLIDKSGMVEVVAFP 1042 >gi|254430744|ref|ZP_05044447.1| DNA polymerase III, alpha subunit subfamily, putative [Cyanobium sp. PCC 7001] gi|197625197|gb|EDY37756.1| DNA polymerase III, alpha subunit subfamily, putative [Cyanobium sp. PCC 7001] Length = 1180 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1068 (38%), Positives = 606/1068 (56%), Gaps = 63/1068 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PA+A+TD ++ A+E + AGI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPAMVERAVELGMPALALTDHGVMYGAIELLKLCSKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRMYLLD 123 IIG N G P P +V+L A GY+ L++L S +L Sbjct: 62 IIG---------NEMYVINGALDDPNPPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRG 112 Query: 124 QGKQSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + + R C+ L +EGLI+ T G I +A VA + ++++FGD Sbjct: 113 MRGRGIFARACIDKQLLRQHSEGLIVATACLGGEIPQAILRGRPDVARQVAAWYQEVFGD 172 Query: 181 RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ +Q H G DR +++ ++ + L+ATN++ +LS D EAHD L+ V + Sbjct: 173 DFYLEIQDHGGLEDRIVNTEIARIGQELGIELIATNDAHYLSVGDVEAHDALLCVLTGKL 232 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE------ALENTVEIARRCSFILQVHAPILP 293 +S + R R T Y+K+ +EM+++F+D E A+ NT ++A + + +P Sbjct: 233 ISDEKRLRYTGTEYIKSEAEMLALFADHLEPDVIRRAVANTAQVAEKVEDYDILGRYQMP 292 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 RF E + L A GL RL A A A Y +RL FEL V+ +M F Sbjct: 293 RFPIPEG----HTAVSYLSAVAEQGLRDRLELAAEAPFEPA--YGERLRFELEVMEQMGF 346 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFL+V D+I++A++N IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R Sbjct: 347 PTYFLVVWDYIRFARENRIPVGPGRGSAAGSLVAYALGITNIDPVVHGLLFERFLNPERK 406 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY D Sbjct: 407 SMPDIDTDFCIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDAD 466 Query: 474 RLCKLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 RL KLIP P L+ + + + FRE DP V R ++++ ++EG + HA Sbjct: 467 RLAKLIPVVRGKPAKLKEMIGPESPAAEFREKYEKDPDVRRWVDMAMRIEGTNKTFGVHA 526 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI PL +LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K+LD + Sbjct: 527 AGVVIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLDLV 585 Query: 590 AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q G VD +P DD TY LL GIFQLESSGMRQ + ++P C+EDI ++++ Sbjct: 586 QQSTGETVDPDKLPLDDAATYGLLARGDLEGIFQLESSGMRQIVRDLKPSCLEDISSILA 645 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+D ++ + NRK+G+E I H + P+L ET G+++YQEQ+M+IAQ L+GYS Sbjct: 646 LYRPGPLDAGLIPKFINRKHGREAIDFAHDKLQPILNETYGIMVYQEQIMKIAQDLAGYS 705 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L EAD+LRRAMGKK K EM+K + F+ GA++ G+ +A +FE + FA+Y FNKSH+ Sbjct: 706 LGEADLLRRAMGKKKKSEMEKHQTIFVEGATRRGVDTKVAEALFEQMVLFAEYCFNKSHS 765 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AY +++QTA++K HYPV ++AA +T+ +K++++ + I++MPP VN + Sbjct: 766 TAYGAVTFQTAYLKAHYPVAYMAALLTVNAGASDKVQRYIANCNAMGIEVMPPDVNASGI 825 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 DF +RI + L+A++ +G R ++E D PF SL D C R+ ++LNRR LE+L Sbjct: 826 DFTPVGDRILFGLSAVRNLGDGAIRQLIEVRQEDGPFRSLADLCDRIPGQQLNRRALEAL 885 Query: 886 VFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRTNKHENIF------------AHEK 931 + +GALD S R QL+ LD I +A ++R + N+F + Sbjct: 886 IHSGALDALEPSGNRAQLMADLDLILDWASSRARDRASGQGNLFDLMASSSAAEPASAGG 945 Query: 932 GTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL-DVYKPI--LRKMGIKGYEE 985 D T K + N + + E+ ++GFY S HPL + +P+ L + + EE Sbjct: 946 AGGGDLSTAPKAAPVNDYPPTEKLRLEKELVGFYLSDHPLKQLGRPVRLLSPVALATLEE 1005 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + AMV +Q TRKG R+ + + EA FP Sbjct: 1006 QPDKAK---VSAVAMVPELRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1050 >gi|253577284|ref|ZP_04854602.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] gi|251843288|gb|EES71318.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] Length = 1110 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1060 (38%), Positives = 607/1060 (57%), Gaps = 47/1060 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA L +++ K AA A+A+TD ++ A+ F + GI+P Sbjct: 38 SFVHLHVHSEYSLLDGAARLEDLVAKAAASGMKALALTDHGVMYGAVPFYKLCKKHGIKP 97 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + ++ P + ++LL GY+ L++L S + L+ Sbjct: 98 IIGCEVYFTAGSRKERGSRKDQP---IHHLILLAKNETGYRNLMKLCSIGH-LEGFHYKP 153 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI LQ EGL+ L+ G + + A+K L ++ FG+ Y+ LQ H Sbjct: 154 RIDWDALQR-HREGLVCLSACLGGEVPFHLLRGHYEEAKKAALRYQAAFGEDFYLELQDH 212 Query: 190 RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + + +VQLA LV TN++ +LS+ED E DVL+ V V +DR ++ Sbjct: 213 GIPEQKKVNPLLVQLAGEIGAELVVTNDAHYLSKEDAEVQDVLICVGTGKTVDDEDRLKM 272 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T YLK EM +F LPEA NT +IA C L+ ILP + Sbjct: 273 HTNQLYLKTAEEMAQLFPHLPEAYANTAKIADSCELELEFDRHILPAYRPIPEGHTAGSY 332 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQW 366 EL + GL R + + + ++ QRL +EL +IA M FS YFLIV DFI + Sbjct: 333 LAELCQQ---GLVDRYGELDVWRDLTEREKLEQRLRYELEIIASMGFSDYFLIVWDFIAF 389 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N I GPGRGS AGS+ AY L ITD+DP++++LLFERFLNP+R++MPD DIDF +R Sbjct: 390 AHRNGIATGPGRGSSAGSLVAYVLRITDVDPIKYNLLFERFLNPERVTMPDIDIDFSDER 449 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+ +VD++ KLIP Sbjct: 450 RDEVIAYVVDKYGAEHVAQIITFGTMAARAAVRDVGRALNVPFGEVDKVAKLIPGHLGMT 509 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + V RLL+++ K+EG+ RHASTHAAG+VI PL+ VP+ Sbjct: 510 IE-RALKESPDLKAMYDGSERVKRLLDMAMKVEGMPRHASTHAAGVVISRDPLTDAVPL- 567 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 ++ +TQ++M+ +E GL+K DFLGL+TL+++++ ++++ Q G D L+P +D Sbjct: 568 QEGSEHTALTQYSMENLEAIGLLKMDFLGLRTLSIIERCMNWIKEQSGDAPDFRLVPDND 627 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 TY +L T G+FQLES+GMR+ L+ M+P EDII+L++LYRPGP++ I Y K Sbjct: 628 PATYEMLGRGETTGVFQLESTGMRRVLKEMKPSVFEDIISLLALYRPGPMEFIPKYIAGK 687 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+ + HP ++P+LK+T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E + Sbjct: 688 HGQITVEYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVL 747 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+Q+ F+SG+ + G ++ A +++++ +FADYGF ++HAAAY V+++QTA++K HYPV Sbjct: 748 DEQRGHFVSGSVQQGYTEDEANVVYDMIVRFADYGFARAHAAAYGVLAFQTAYLKAHYPV 807 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF--KVGDNR--------- 834 +F+A+ +T + K+ ++ + R+ I ++PP VN V F +VG Sbjct: 808 QFMASMLTAVTGSHRKVAEYIVECRRMGIVVLPPDVNESSVLFTPQVGAGSADAALSGEA 867 Query: 835 ---------------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873 I + LAAIK VGT I+ ++PFDSL DFC RVD Sbjct: 868 KGRDAKDGHAGSGQEPPALGVIRFGLAAIKNVGTQAIESILRERKERPFDSLLDFCRRVD 927 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+RV+ESL+ GA D R QLL LD + A K R +F + Sbjct: 928 LRTCNKRVIESLIQGGAFDSLPGHRAQLLAMLDETVEAALKWRKERDELQIQLFDFVESP 987 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 D I ++ + + E+ +LG Y SGHPLD + +L G+ + Sbjct: 988 NWD-IEYPDVPKFTAAQQLDLERELLGLYLSGHPLDDFDALLEGEGVDRLMDLAEAPDDT 1046 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +A MVVS + T++G + ++ + + E FP Sbjct: 1047 RTVVAGMVVSVKTITTKQGKAMAFMELEDQIERCEVVLFP 1086 >gi|260555310|ref|ZP_05827531.1| DNA polymerase subunit III alpha [Acinetobacter baumannii ATCC 19606] gi|193077117|gb|ABO11893.2| DNA polymerase III alpha chain [Acinetobacter baumannii ATCC 17978] gi|260411852|gb|EEX05149.1| DNA polymerase subunit III alpha [Acinetobacter baumannii ATCC 19606] Length = 1187 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1018 (38%), Positives = 595/1018 (58%), Gaps = 58/1018 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + +++ D+ PA+A+TD +NL +A++F GI+PI Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ + LL + G++ L E+VSR ++ +G+Q Sbjct: 63 LGSTIRLNDAQH---------------RATLLAMSDIGWKGLTEIVSRGFI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E + +++L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 106 PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTR 163 Query: 189 HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 DR E +Q LA + + +VA N+ F+ +ED+EAH+ + +A V++ Sbjct: 164 T---DRPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDR 220 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------I 296 RPR+ +P+ Y K EM+ +FSD+P A+ENT +IA+RC+ L++ LP + I Sbjct: 221 RPRLYSPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI 280 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + + + KE E R + +E R + + Y +R+D+E+ +I +M F GY Sbjct: 281 DTYFEHLSKEGLEE-RLNYLYPVEKRGEDWPEIR----KPYDERIDYEVGIILKMGFPGY 335 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 336 FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ Sbjct: 396 DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530 K++P P AI + + ++ + +PS + E++ KLEG+ R+ HA Sbjct: 456 KMVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAG 514 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + Sbjct: 515 GVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574 Query: 591 QR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + +++S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA V Sbjct: 575 KNRDSNDPLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFV 634 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+D I + +R +G E +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L Sbjct: 635 SLYRPGPMDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTL 693 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAA Sbjct: 694 GGADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAA 753 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA+++Y TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN Sbjct: 754 AYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYH 813 Query: 828 FKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885 F D++ I Y L AIKGVG + ++++ + P+ L DFC R+D KK+N+R LE+L Sbjct: 814 FHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEAL 873 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944 + AGALDC G R L+ L + A+ NR + ++F E+ ++ +S Sbjct: 874 IRAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWS 933 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 E VR + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 934 DE---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVL 988 >gi|262369729|ref|ZP_06063057.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046] gi|262315797|gb|EEY96836.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046] Length = 1189 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1012 (38%), Positives = 586/1012 (57%), Gaps = 46/1012 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ A+ PA+AITD +NL +A++F K GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLVKAAKAEGMPALAITDLSNLHAAVKFYGKCLDNGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ ++ + LL + G++ L ELVS ++ Q Sbjct: 63 MGSEVRLNDAEH---------------RVTLLAMSNVGWRNLTELVSEGFIRGQQLDIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-- 188 + W+ E + LI L G S + + ++ Q AE L + FG+R+Y+ L R Sbjct: 108 VAKDWILEQNHD-LIALLGMRSD-VGKMLCTSNPQKAEPLLEEWIAKFGNRVYLALCRTE 165 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 G D + + ++LA + + +VA N+ F+ E D+EAH+ + +A V+ RP+ Sbjct: 166 RSGEDDFN-YEALKLAKKYNIGVVAHNDVHFMKEIDFEAHEARVCIADGYVLGDNRRPKD 224 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +P+ Y K+ +M +F+D+P A+ENT +IA+RC+ LQ+ LP + E I Sbjct: 225 YSPEQYFKSGQQMAELFADIPSAIENTYQIAKRCNVTLQLGKYFLPDYPIPEGHTI---- 280 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361 + + + GLE RL Y + +Y RL++E+ I +M F GYFLIV Sbjct: 281 DTYFAHLSKEGLEERLDFLYPPETRDEYWPEKRKEYDDRLEYEIGTILKMGFPGYFLIVM 340 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 341 DFIQWSKGNGVPVGPGRGSGAGSLVAYSLKITDLDPLPYGLLFERFLNPERVSMPDFDVD 400 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RD VI YV YG + V+QI TFG++ AK A+RDV R L Y DR+ K+IP Sbjct: 401 FCIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPT 460 Query: 482 DPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIGD 536 P ++I + + ++ ++P D + E++ KLEG+ R+ HA G+VI Sbjct: 461 KPLGLSLEESIEAEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVISP 520 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---G 593 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + +R Sbjct: 521 TKITDFSAVLCDADGTGRVAQYDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKRIQLD 580 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 V +D++ IP DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPG Sbjct: 581 VPLDIAFIPLDDKDAYLIFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPG 640 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + +R +G E +HPL++ +L+ T G+++YQEQVMQ AQ +GYSL AD+L Sbjct: 641 PMDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYSLGGADLL 699 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM KQ++ F GA+K I + A +IF+ + KFA YGFNKSHAAAYA+++ Sbjct: 700 RRAMGKKKPEEMVKQRQIFTEGAAKKDIDQATANHIFDYMEKFAGYGFNKSHAAAYALVA 759 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTAW+K HYP EFLAA M+ EM N + + D R +I+++PPSVN F D+ Sbjct: 760 YQTAWLKAHYPAEFLAAVMSSEMQNTDNVVFLIDDCRHNDIEVLPPSVNMSIYQFHASDD 819 Query: 834 R-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 + I Y L AIKGVG + ++++ D P+ L DFC R+D KK+N+R LE+L+ +GAL Sbjct: 820 KTIVYGLGAIKGVGEAAMQSVIDSRIQDGPYRDLFDFCHRIDLKKINKRTLEALIRSGAL 879 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSV 950 DC G R L+ L + A NR ++F E+ ++ +S E V Sbjct: 880 DCLGIERSSLMAQLPEAVQAADQARSNRETGIMDLFGEVEEVQRKPAKPVKPWSDE---V 936 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 R + E+ LG Y +GHP+DVY+ L+ E T RG A +VV Sbjct: 937 RLKGEKDTLGLYLTGHPIDVYRTELKAFIPNKINELTPTRRGVTTVFAGLVV 988 >gi|169796248|ref|YP_001714041.1| DNA polymerase III, alpha chain [Acinetobacter baumannii AYE] gi|184157823|ref|YP_001846162.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ACICU] gi|213157018|ref|YP_002319063.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB0057] gi|215483703|ref|YP_002325924.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB307-0294] gi|294838019|ref|ZP_06782702.1| DNA polymerase III DnaE [Acinetobacter sp. 6013113] gi|294843569|ref|ZP_06788252.1| DNA polymerase III DnaE [Acinetobacter sp. 6014059] gi|294859019|ref|ZP_06796788.1| DNA polymerase III DnaE [Acinetobacter sp. 6013150] gi|301347827|ref|ZP_07228568.1| DNA polymerase III DnaE [Acinetobacter baumannii AB056] gi|301511111|ref|ZP_07236348.1| DNA polymerase III DnaE [Acinetobacter baumannii AB058] gi|301595112|ref|ZP_07240120.1| DNA polymerase III DnaE [Acinetobacter baumannii AB059] gi|169149175|emb|CAM87054.1| DNA polymerase III, alpha chain [Acinetobacter baumannii AYE] gi|183209417|gb|ACC56815.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii ACICU] gi|213056178|gb|ACJ41080.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB0057] gi|213988216|gb|ACJ58515.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB307-0294] gi|322508138|gb|ADX03592.1| DNA polymerase III, alpha chain [Acinetobacter baumannii 1656-2] gi|323517712|gb|ADX92093.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii TCDC-AB0715] Length = 1187 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1018 (38%), Positives = 595/1018 (58%), Gaps = 58/1018 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + +++ D+ PA+A+TD +NL +A++F GI+PI Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ + LL + G++ L E+VSR ++ +G+Q Sbjct: 63 LGSTIRLNDAQH---------------RATLLAMSDIGWKGLTEIVSRGFI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E + +++L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 106 PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTR 163 Query: 189 HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 DR E +Q LA + + +VA N+ F+ +ED+EAH+ + +A V++ Sbjct: 164 T---DRPGEEDFIQEAAKLAAKYNVGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDR 220 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------I 296 RPR+ +P+ Y K EM+ +FSD+P A+ENT +IA+RC+ L++ LP + I Sbjct: 221 RPRLYSPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI 280 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + + + KE E R + +E R + + Y +R+D+E+ +I +M F GY Sbjct: 281 DTYFEHLSKEGLEE-RLNYLYPVEKRGEDWPEIR----KPYDERIDYEVGIILKMGFPGY 335 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 336 FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ Sbjct: 396 DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530 K++P P AI + + ++ + +PS + E++ KLEG+ R+ HA Sbjct: 456 KMVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAG 514 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + Sbjct: 515 GVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574 Query: 591 QR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + +++S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA V Sbjct: 575 KNRDSNDPLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFV 634 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+D I + +R +G E +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L Sbjct: 635 SLYRPGPMDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTL 693 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAA Sbjct: 694 GGADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAA 753 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA+++Y TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN Sbjct: 754 AYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYH 813 Query: 828 FKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885 F D++ I Y L AIKGVG + ++++ + P+ L DFC R+D KK+N+R LE+L Sbjct: 814 FHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEAL 873 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944 + AGALDC G R L+ L + A+ NR + ++F E+ ++ +S Sbjct: 874 IRAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWS 933 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 E VR + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 934 DE---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVL 988 >gi|51598831|ref|YP_073019.1| DNA polymerase III subunit alpha [Borrelia garinii PBi] gi|51573402|gb|AAU07427.1| DNA polymerase III, subunit alpha [Borrelia garinii PBi] Length = 1147 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1014 (40%), Positives = 617/1014 (60%), Gaps = 32/1014 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 7 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 66 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 67 IGIEAYMAKTSKFFKKHDDLGKMSY----HLILLAKNEIGYKNLLKLTSISYL-EGFYYR 121 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 122 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILGNRFEDAKNEILWFKKVFGNDFYLELQR 180 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ ++V+ + +PL A N+S +++ ED A D+++ + S ++R + Sbjct: 181 HGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDAIAQDIIVCIGTGAKKSDENRLK 240 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQ 304 + T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + + Sbjct: 241 METNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEFNTLG 300 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L + GL+ R + R +EL+VI RM F GYFLIV DFI Sbjct: 301 EY----LEYLTLEGLKFRYKT-------LTSKIKDRAFYELSVIIRMGFEGYFLIVWDFI 349 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC Sbjct: 350 KFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 409 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP+ P Sbjct: 410 EGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIPDGPK 469 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 VSL+ + DD+ +E + P L++ + LEG+ RHASTHAAGIVI PL+ VP Sbjct: 470 --VSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLTDYVP 527 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602 +Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + IP Sbjct: 528 LYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNIP 585 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 586 DNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQFI 645 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K G + I HP + +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK + Sbjct: 646 AAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKE 705 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +EMD+ K F+ GA + G K +A IFELL F+ YGFNKSHAAAY++I+YQTA++K + Sbjct: 706 DEMDEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKAN 765 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L AI Sbjct: 766 YPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLNAI 825 Query: 843 KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K +G I+ E + + S E+F RVD K +N++ LES + +G D +R L Sbjct: 826 KNLGEIVVDLIIDEREKNGKYSSFENFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKTL 885 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSVENSSVRFENEQRVL 959 ++LD + + + N+ ++F KG + F + S E E+ +L Sbjct: 886 FENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIHQNFNYQAFKEYSYSELLEFEKELL 945 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 GFY SGHPLD YK + + +AT + + ++ + ++ S + +T++ + Sbjct: 946 GFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSIVQFSGILNSVKVIQTKRNN 999 >gi|239504052|ref|ZP_04663362.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB900] Length = 1187 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1018 (38%), Positives = 594/1018 (58%), Gaps = 58/1018 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + +++ D+ PA+A+TD +NL +A++F GI+PI Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ + LL + G++ L E+VSR ++ +G+Q Sbjct: 63 LGSTIRLNDAQH---------------RATLLAMSDIGWKGLTEIVSRGFI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E + +++L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 106 PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTR 163 Query: 189 HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 DR E +Q LA + + +VA N+ F+ +ED+EAH+ + +A V++ Sbjct: 164 T---DRPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDR 220 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------I 296 RPR+ +P+ Y K EM+ +FSD+P A+ENT +IA+RC+ L++ LP + I Sbjct: 221 RPRLYSPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI 280 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + + + KE E R + +E R + + Y +R+D+E+ +I +M F GY Sbjct: 281 DTYFEHLSKEGLEE-RLNYLYPVEKRGEDWPEIR----KPYDERIDYEVGIILKMGFPGY 335 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 336 FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ Sbjct: 396 DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530 K++P P AI + + ++ + +PS + E++ KLEG+ R+ HA Sbjct: 456 KMVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAG 514 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + Sbjct: 515 GVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574 Query: 591 QR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + +++S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA V Sbjct: 575 KNRDSNDPLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFV 634 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+D I + +R +G E +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L Sbjct: 635 SLYRPGPMDLIPDFIHRMHGGE-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTL 693 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAA Sbjct: 694 GGADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAA 753 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA+++Y TAW+K HYP EF+AA M+ EM N + + D R + ++PPSVN Sbjct: 754 AYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLDVLPPSVNMSTYH 813 Query: 828 FKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885 F D++ I Y L AIKGVG + ++++ + P+ L DFC R+D KK+N+R LE+L Sbjct: 814 FHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEAL 873 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944 + AGALDC G R L+ L + A+ NR + ++F E+ ++ +S Sbjct: 874 IRAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWS 933 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 E VR + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 934 DE---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVL 988 >gi|118475097|ref|YP_892396.1| DNA polymerase III subunit alpha [Campylobacter fetus subsp. fetus 82-40] gi|118414323|gb|ABK82743.1| DNA polymerase III alpha subunit [Campylobacter fetus subsp. fetus 82-40] Length = 1331 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1024 (39%), Positives = 604/1024 (58%), Gaps = 78/1024 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA + + ++ + AITD N++ AL+F + A GI+PI Sbjct: 4 FTHLHLHTEYSLLDGANKIKVLAKRLKELNIKSCAITDHGNMYGALDFYKTMKAEGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I +++ + + F + L GYQ L+ L S Y+ R Sbjct: 64 IGLEAYIHNHEDIS-NKESRQRF----HLCLFAKNEVGYQNLMYLSSMSYIKGYYYHP-R 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-----------QVAEKRLLTFKKLFG 179 I L+E +EGL+ + +G ++ F N S + A++ L +K +FG Sbjct: 118 INKKLLRE-HSEGLVCSSACLAGEVN--FHLNLSDRNLKRGAGGYESAKRVALEYKDIFG 174 Query: 180 DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ + RH D+ R + +++L+ + L+ATN++ + +++ A + + ++ + Sbjct: 175 DDFYLEIMRHGIGDQQRIDDDIIRLSMETGIKLIATNDAHYTTKDSAVAQKIFVYISANK 234 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 K R +V + Y K+ EM +IF+D+PE +ENT EI +C+ +++ P F Sbjct: 235 NFDDKVREQVLSEFYAKSADEMSAIFADMPEVIENTNEIVEKCNLEIKLGDATPPNFKFT 294 Query: 296 --IEKECDDIQKEEENE--LRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 KE I +NE L N + GLE RL I H Q Y+ RLD E Sbjct: 295 QEYAKERGIILPHPQNEYDLENDSFLFEYECKQGLEKRLE--FIDPSKH-QIYKDRLDLE 351 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N I MKF GY LIVADFI AK+ IPVGPGRGS AGS+ AYAL ITDIDPL ++LLF Sbjct: 352 INTINNMKFPGYMLIVADFINEAKRRGIPVGPGRGSAAGSLVAYALRITDIDPLPYNLLF 411 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQ+RR EVI YV KYG VAQ+ TFG L AK +RDV R Sbjct: 412 ERFLNPERISMPDIDVDFCQNRRGEVIDYVIEKYGEYNVAQVATFGKLLAKGVIRDVARV 471 Query: 465 LQMPYSQVDRLCKLIPND-----PAHPVSLQAIADDSRFREARLAD-----PSVDRLLEI 514 + MPYS+ D + KLIP++ AH + D + +E ++ + ++ E Sbjct: 472 MGMPYSEADAMAKLIPDELGITLKAHKNKKGDMEDGAFEKEPKIGELIAKNDLAKQVWEY 531 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFD 572 S +LEGL R+ HAAGIVI + L + P+++ ++ VTQ+ ++E LIKFD Sbjct: 532 SCELEGLNRNPGMHAAGIVISNEELWKKAPLWKQSNAEAGHYVTQYTKDYLEDVDLIKFD 591 Query: 573 FLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ + + +R GV + I F+D +TY + + TLGIFQ+ESSGM+ Sbjct: 592 FLGLKTLTVIDNAKKLIKERFGVDILWEKIDFNDQKTYETIQSGNTLGIFQIESSGMQSL 651 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 ++PDC EDIIA+++LYRPGP+++ +V + + K+GK+KI + P+L+ T GVI Sbjct: 652 AAKLRPDCFEDIIAMIALYRPGPLNSGMVDDFIDIKHGKKKIEYAFAALKPILEPTYGVI 711 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQ+ Q + G+SL AD++RRAM KK ++EM K +++ GA +NG + A + Sbjct: 712 VYQEQVMQVVQTVGGFSLGGADLVRRAMSKKKEDEMLHLKTQYLEGAKRNGFDEGKADAL 771 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 FEL+ KFA+YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +N++KI K+ + Sbjct: 772 FELIMKFAEYGFNKSHSAAYALITFQTAYLKTYYPAEFMAALLTSEENNIDKIIKYIDEI 831 Query: 810 RQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865 ++ NI+++PP+VN +F V G + I Y +AAIKGVG I++A D PF+S+ Sbjct: 832 KRLNIKLLPPNVNYSVREFSVIQKDGSDSIIYGMAAIKGVGVGAVEDIIKAREDGPFESV 891 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI---QKYAQWVEKNRTNK 922 + F S+ D +NRRV ESL+ +GA D FG++R L+ +L+ I K ++KN TN Sbjct: 892 DSFISKTDCTTVNRRVFESLIKSGAFDDFGFTRKMLIHNLETIIENSKRISDIKKNATN- 950 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFE--------NEQRVLGFYFSGHPLDVYKPI 974 FSD ++ + SV+ +++ E EQ +LG Y SGHPLD Y+ Sbjct: 951 ---------SLFSDDDSMSEISVDLVNIKDEFDKKEILKFEQEILGVYVSGHPLDEYRDK 1001 Query: 975 LRKM 978 + K+ Sbjct: 1002 IDKI 1005 >gi|255657970|ref|ZP_05403379.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544] gi|260850171|gb|EEX70178.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544] Length = 1128 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1030 (37%), Positives = 607/1030 (58%), Gaps = 26/1030 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ +SLL+GA + +++ A +IAITD ++ ++F ++A G++PI Sbjct: 3 FTHLHVHTEFSLLDGASRIKELIETTKALGMDSIAITDHGAMYGVIDFYKEAKKQGVKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + + ++LL GY+ L++LVS + ++ R Sbjct: 63 IGCEVYVAPGARQEHREVNGVRYY---HLILLAENQTGYRNLVKLVS-LANVEGMYYKPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L++ EG+I L+ +G I RA ++ + A+ + + ++FG + ++ +Q H Sbjct: 119 VDKDLLRQY-HEGIICLSACIAGEIPRAILQDNMERADALVREYLEIFGRENFFLEIQNH 177 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 +R + +V+LA +++ LVATN+ ++ ED E HD+L+ + + DR R Sbjct: 178 GLPEERKANAGLVELAKKYDVGLVATNDLHYVHREDSEFHDILLCIQMNKTFDDPDRMRF 237 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + D+YLK+ EM ++F DLPEA+ NT +IA RC + LP + ++ Sbjct: 238 ASDDYYLKSPEEMAALFPDLPEAIANTEKIAARCKVDFEFGHLQLPYY---PIPAPYADD 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E LR+ L R A + R+RL++EL +I RM + YFLIV DFI ++ Sbjct: 295 EAYLRHLCEENLPRRYATVT-------EKIRERLEYELGIIHRMGYDSYFLIVWDFINYS 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +++ I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD D+DF +R Sbjct: 348 REHGIGVGPGRGSAAGSIVAYLLGITNLDPLKYDLLFERFLNPERVTMPDIDVDFDYIQR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +VI YV+ +YG++ VAQI+TFG++ AK A+RDVGR L +PY++V + KL+PN+ + Sbjct: 408 GKVIDYVKERYGYDHVAQIVTFGTMAAKGAIRDVGRVLNLPYAEVAEIAKLVPNELKITL 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + + FR+A + V RL+++++K+EGL RH+STHAAG+VI PL+ VP+ Sbjct: 468 D-KAMQESADFRKAYESSEDVHRLIDLARKIEGLPRHSSTHAAGVVIARHPLTDYVPV-- 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDH 606 + VT+++ +E+ GL+K DFLGL+TLT++ ++ + R KVD+ IP D Sbjct: 525 SISEGTLVTEYDKDHVEELGLLKMDFLGLRTLTVISDTIANIEKSRHEKVDIDKIPLTDG 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664 T +L T +FQ+ES+GM Q + + P+ D+I LV+LYRPGP+ + +V + Sbjct: 585 LTSKMLCEGKTGAVFQMESAGMTQLVRDLAPENFADLIPLVALYRPGPLGSGMVEDFIKG 644 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++G++++ +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK E Sbjct: 645 RHGEKEVTYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHEI 704 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + QKE F+ G KN I +A IF+LL FADYGFNKSH+AAYA++++QTA++K HYP Sbjct: 705 LMAQKENFLDGCEKNHIDAGLANTIFDLLTHFADYGFNKSHSAAYALVAWQTAYLKAHYP 764 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA +T MD K+ + + R+ I+I+PP +N F V + I + LAA++ Sbjct: 765 AEFMAAMLTSIMDT-PKVSTYIELCRRMGIKILPPDINASSAYFSVDGDAIRFGLAAVRN 823 Query: 845 VGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG T ++ PF SL DFC RVD + +NRRV+ESL+ GA D FG R QLL Sbjct: 824 VGETAIENVARIRETGGPFSSLSDFCRRVDMRVVNRRVIESLIKCGAFDSFGAKRSQLLA 883 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L A +K+ + +F+ E + + L + R E+ GFY Sbjct: 884 VLPQTVMEAAQQQKDAVSGQMGLFSDETIEETGMLQLPDIDEVPKAERLRWEKEATGFYI 943 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 +GHPLD Y L + G + +R+ M+ ++ T+KG + + T + Sbjct: 944 TGHPLDQYAAKLENLPRIGSLQPDTVRDKQVVRIGGMLTEAKRITTKKGDTMCFATVEDF 1003 Query: 1024 AKEYEANFFP 1033 E FP Sbjct: 1004 TDSIEVTVFP 1013 >gi|164686689|ref|ZP_02210717.1| hypothetical protein CLOBAR_00284 [Clostridium bartlettii DSM 16795] gi|164604079|gb|EDQ97544.1| hypothetical protein CLOBAR_00284 [Clostridium bartlettii DSM 16795] Length = 1178 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1064 (36%), Positives = 611/1064 (57%), Gaps = 60/1064 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F HL VH+ YSLL+G + ++ + ++AITD N+F ++F ++A GI Sbjct: 2 SSEFAHLHVHTEYSLLDGFSRVKKLIKRTKELGMKSVAITDHGNMFGVIDFYKEAKKQGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P+IGC+L + +T++ ++LL GYQ LI+LVS Y+ D Sbjct: 62 KPVIGCELYTAQR---SLTDKDPNFDKRYGHLILLAENMTGYQNLIKLVSISYV-DGFYY 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186 R+ + L+E +EG+I L+ +G + A + + A++ LT+ ++FG Y+ L Sbjct: 118 KPRVDIEALRE-HSEGIICLSACLAGDVSNALMNRNYEKAKEIALTYNEIFGQGNFYLEL 176 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ + +V+L+ +PLVATN+ ++ + D +AHDVL+ + ++ R Sbjct: 177 QDHNLPEQKEVNASLVKLSKELNIPLVATNDIHYVDKADSKAHDVLLCIQMGKTLNDPAR 236 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T + YLK+R EM +F EAL+NT +IA RC+ + LP + E Sbjct: 237 MRFGTEEFYLKSREEMEELFPYALEALDNTAKIAERCNVEFDFNTIHLPNYEVPE----- 291 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 +G L + + Y +Q+ RL +EL VI +M + YFLI D Sbjct: 292 --------GYTTSGYLEELCYKGLYERYENPSQEILDRLKYELGVINKMGYVEYFLITWD 343 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI +AK+N I VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R+SMPD DIDF Sbjct: 344 FINFAKENGIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVSMPDIDIDF 403 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L +PY++VD++ K IPN Sbjct: 404 CYERREEVIDYVKRKYGEDHVAQIITFGTMGAKLAIRDVGRVLDIPYNKVDKIAKEIPNA 463 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ + + D ++ IS++LEG+ RHASTHAAG+VI P+ + Sbjct: 464 LGMTID-KALETNPNLKSLYEQDQETKTIINISKELEGMLRHASTHAAGVVISKNPIDEY 522 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601 VP+Y+ D TQF M +E+ GL+K DFLGL+TLT+++ +LD + + G K+D S + Sbjct: 523 VPLYK--HQDAISTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEKNHGRKIDFSKM 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 +DD + + LL++ TLG+FQ+ES+GMR ++ ++P EDI+A +SLYRPGP+D+I Y Sbjct: 581 DYDDPKVFELLSSGNTLGVFQMESAGMRSFMKQLKPSNFEDIVAGISLYRPGPMDSIPTY 640 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K+ EKI IH + P+++ T G +IYQEQVM++ + L GYS +D++RRAMGKK Sbjct: 641 LEYKHNPEKITYIHEKLKPIMEVTYGCLIYQEQVMEVVRELGGYSYGRSDLVRRAMGKKK 700 Query: 722 KEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 + M+++++ FI G + +NG+ + A IF+ + FA Y FNKSHAAAY Sbjct: 701 MDVMEEERQYFIHGKTDENGNIEIAGCVRNGVDEQTANKIFDDMIDFAKYAFNKSHAAAY 760 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 VI+Y+TA++K HYPVEF+AA +T M N +K+ ++ ++ NI+++ P +N F Sbjct: 761 GVIAYETAYLKAHYPVEFMAALITSVMGNTDKVVEYIRECNALNIKVLKPDINKSFAKFS 820 Query: 830 VGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V DN I + LAA+K VG +I +E + F + R+DSK +N+RV+ESL+ Sbjct: 821 VEDNNIRFGLAAVKNVGVNIINNIVIEREQNGEFTDFINLIKRLDSKDINKRVIESLIKC 880 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 G D GY+R L+ + + + K ++F G ++ +++F + Sbjct: 881 GGFDEMGYNRASLMMGYEKVLESVSLERKKNIKGQISLFDGLDGLGQNE-EIDRFENSTT 939 Query: 949 SV----RFEN------EQRVLGFYFSGHPLDVYKPIL--------RKMG-IKGYEESVAT 989 S+ FE E+ VLG Y SGHPL Y+ L +K+ +K + Sbjct: 940 SIASIQEFEEREKLALEKEVLGMYVSGHPLSEYEKELETRTSLNTKKLNEVKENLDKYLA 999 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + N+ + M+ +K+ + T++ + ++ + E FP Sbjct: 1000 MDQENVIIGGMISNKRIQTTKRNEIMAFLEVEDLYGSIEVIVFP 1043 >gi|303228475|ref|ZP_07315306.1| putative DNA polymerase III subunit alpha [Veillonella atypica ACS-134-V-Col7a] gi|302516833|gb|EFL58744.1| putative DNA polymerase III subunit alpha [Veillonella atypica ACS-134-V-Col7a] Length = 1135 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1032 (38%), Positives = 619/1032 (59%), Gaps = 29/1032 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + +QPA+AITD N+++A+ F ++ A GI+PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELEQPALAITDHGNMYAAIYFYKECVAQGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + L +G++ + ++LL T EGY+ L+++VS+ + R Sbjct: 64 IGCEVYVTEGSRLDKP-EGRSR-ERLKHLILLAETMEGYRNLVKIVSKAST-EGFNYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L++ ++G+I L+ G + + ++ A + + + + FG D ++ +Q H Sbjct: 121 ADHDLLRQY-SKGIIALSACIQGEVPQYILQDNMDGARRAVEWYIETFGKDNFFLEIQNH 179 Query: 190 RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + R QV+ QLA + L +VA+N+ ++ ++D +A D+ + + ++ DR + Sbjct: 180 GLPEELRAQQVLCQLADEYGLGIVASNDFHYVMKDDADAQDIRVCIQTGRRRAEVDRLKF 239 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +F +P ALENTV+IA RC+ LP F D+ + E Sbjct: 240 PNDEFYLKSGDEMAELFGHIPGALENTVKIADRCNVEFNFDEHHLPHF------DVPEGE 293 Query: 308 ENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ + V E+ RL G +++ ++RLD+EL+VI M F YFLIV D++++ Sbjct: 294 TSKTYLRKVCEREIPRLY------GDTSEELKKRLDYELDVIGTMGFEDYFLIVWDYVRY 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++ Sbjct: 348 AREHDILVGPGRGSAAGSVVAYLLGITGLDPLQYDLLFERFLNPERVSMPDIDIDFCYEK 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E I YV KYG RV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ Sbjct: 408 RGEAIDYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 ++L+ + DP+V L + QKLEG+ R++STHAAG+VI PL VP+ Sbjct: 466 ITLEKALKGKDLKALYDTDPNVKELFDFGQKLEGIARNSSTHAAGVVISADPLDDHVPV- 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 ++ + VTQ++ IE+ GL+K DFLGL+TLT++ +L + A RG+ +DL IP DD Sbjct: 525 QNSNEEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 LLT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + +V + + Sbjct: 585 KAACELLTKGDTSGVFQLESDGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK + Sbjct: 645 RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + Q+E FI G+ NGI ++IA +F+LL FA YGFNKSH+AAYA I+YQTA++K HY Sbjct: 705 VLKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKVHY 764 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 EF+AA+MT M N++K+ + ++ N+Q++ P VN F V + I + L IK Sbjct: 765 FPEFMAATMTSFMQNMDKLTYYINACKKHNVQVLGPDVNHSLRSFAVQGDAIRFGLGGIK 824 Query: 844 GVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG R I E A+ + S+ DFC RVDSK +N+R+LESL+ GA+D F +R QLL Sbjct: 825 NVGDNAIDRLIAEREANGLYTSITDFCRRVDSKVVNKRLLESLIRCGAMDGFEENRNQLL 884 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 ++ Q +K+ ++F E D I + + + ++E+ GFY Sbjct: 885 HMYESAQAVGAKQQKDAAMGTMSLFG-ESTDDVDMIPVPNLPDLSEDDKLKDEKDYTGFY 943 Query: 963 FSGHPLDVYKPILRKMGIKG-YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 +GHPL Y L+ + G E+ G I ++ + + T++G + + Sbjct: 944 ITGHPLQGYNKELKGLFELGQLLENPERFDGQTITFGGLIAERGDRPTKRGDVMSILRIE 1003 Query: 1022 EPAKEYEANFFP 1033 + + + FP Sbjct: 1004 DYSGSAQVVAFP 1015 >gi|308174617|ref|YP_003921322.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7] gi|307607481|emb|CBI43852.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7] Length = 1115 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/1035 (38%), Positives = 617/1035 (59%), Gaps = 56/1035 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQV S YSLL A S+ I+ + ++A+TD N ++ A+EF + + GI+P Sbjct: 5 SFVHLQVRSGYSLLNSAASVKEIVTQAKELGYSSLALTDENVMYGAIEFYKACKSHGIKP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG I + T P +VLL T GYQ L+++ S + + +G Sbjct: 65 IIGLTASIYTDE---------TELEARP-LVLLAETNTGYQNLLKISSALQSIAKGGMKR 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAF----FFNSSQVAEKRLLTFKKLFGD-RLYV 184 + W++ EGLI +T G +G I+ F + +VAE F++LFG+ R Y+ Sbjct: 115 K----WMKSY-HEGLIAITPGENGYIESLLQAGEFEEAVRVAE----GFRELFGEGRFYL 165 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Q +G++ E ++++L+ E+ + A + ++ +ED +A+ L A+ +D Sbjct: 166 GYQPFKGHETLSE-EILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGE--KWED 222 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPILPRFIEKECD 301 + PD YL+ EM +I+ PEA++ +A++C + Q P P K D Sbjct: 223 QSGDLPDLYLRPPEEMENIYMKNPEAVKAAARVAQQCQVDVSLGQTQLPSFPAPDGKSAD 282 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D E +E GL +R G + +RL++EL+VI RMKFS YFLIV Sbjct: 283 DYLAEVCHE-------GLRLRF-------GTPDERAVRRLEYELDVIRRMKFSDYFLIVW 328 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+++A + I GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DID Sbjct: 329 DFMKYAHEKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDID 388 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F RRDEVI+YVQNKYG VAQIITFG+L AKAALRD GR + + D+L +LIP+ Sbjct: 389 FPDTRRDEVIQYVQNKYGSMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPS 448 Query: 482 DPAHPVSLQAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P ++L+ S RL++ +V ++ +I++K+EGL RH STHAAG+V+ PLS Sbjct: 449 KPG--MTLEEARRQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLS 506 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 ++VP+ ++ + +TQ+ M +E GL+K DFLGL+ LTL++ + + K+D S Sbjct: 507 EVVPL-QEGHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFS 565 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I + D +T+ LL+ T GIFQLESSGMR L+ ++P +EDI+A+ +LYRPGP++NI Sbjct: 566 EISYQDEKTFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIP 625 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 ++ +RK+G+ ++ H + +L +T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ K Sbjct: 626 LFIDRKHGRARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSK 685 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I YQ A++ Sbjct: 686 KQKDILDRERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYL 745 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP+ F+ +T + N +KI ++ +A+ +Q++PPSVN F + + YSL Sbjct: 746 KAHYPLYFMCGLLTSVIGNEDKISQYLHEAKGSGLQVLPPSVNKSGFPFAPENGAVRYSL 805 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIK VG + + I +A KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F +R Sbjct: 806 RAIKNVGVSAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRA 865 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRV 958 LL S+D ++A+ + + +F E + K + E+F + + +RFE E Sbjct: 866 ALLASVDVALEHAELFRAD--DDQMGLFLEESFSIKPKYVEAEEFPLVD-KLRFEKE--A 920 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG YFS HPL ++ +L+K G + ++ +G + + A++ + +T+ G + ++ Sbjct: 921 LGVYFSSHPLSAFRNLLKKRGAQAIATALQMPKG-QLSIGALLAGIKTIRTKTGQHMAFL 979 Query: 1019 TFSEPAKEYEANFFP 1033 T S+ E EA FP Sbjct: 980 TLSDETGEMEAVVFP 994 >gi|123968448|ref|YP_001009306.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. AS9601] gi|123198558|gb|ABM70199.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. AS9601] Length = 1165 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1057 (37%), Positives = 630/1057 (59%), Gaps = 54/1057 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA ++ I+++ +IA+TD ++ L+ +K GI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQISKIVERACDLGMDSIALTDHGVMYGVLDLVKKCKEKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P +V+L GY+ L++L + +L Sbjct: 62 IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRG 114 Query: 127 QSV--RICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + + R C+ S L + ++GLI+ T G I +A VAE L +KKLF D Sbjct: 115 RGIFSRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIALWYKKLFADDF 173 Query: 183 YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q H DR +++++ H++ ++ATN++ +LS D EAHD L+ V ++S Sbjct: 174 YLEIQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSSMDVEAHDALLCVLTGKLIS 233 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRF 295 + R R T Y+K+ +EM+ +F D + +A+ NTVEI+++ +P+F Sbjct: 234 DEKRLRYTGTEYIKSENEMLELFKDHIDDKSIIDAVNNTVEISQKVEVFDLFGNYRMPKF 293 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 E K+ + L+ + GL RL + + + + Y++RL EL +I M F Sbjct: 294 PLNE----DKDSFSFLKQLSNKGLLKRLKKNDLDE--VDEKYKERLTSELKIIKDMGFPD 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D+I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP R SM Sbjct: 348 YFLVVWDYIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D DFC DRR+EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+L Sbjct: 408 PDIDTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKL 467 Query: 476 CKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 KLIP P L + D + FR+ + D + + ++++ ++EG + HAAG Sbjct: 468 AKLIPVVRGKPYKLNEMIDKNSPSQEFRDKYINDNRIKKWVDLALRIEGTNKTYGVHAAG 527 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI PL +LVP+ R+ + +TQ++M IE GL+K DFLGLK LT+++K++ + Q Sbjct: 528 VVIASDPLDELVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLVNQ 586 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 G K+++ +P +D +T+ L+ GIFQLESSGM+Q ++ +P+ +EDI ++++LY Sbjct: 587 SSGKKINIDELPRNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALY 646 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+D ++ + NRKNG EKI HP I +L ET G+++YQEQ+M+IAQ L+GYSL Sbjct: 647 RPGPLDAGLIPKFINRKNGNEKIDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLG 706 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 +AD+LRRAMGKK EM K + F+ G+ K G+++ +A ++F+ + FA+Y FNKSH+ A Sbjct: 707 DADLLRRAMGKKKVSEMVKHRNIFVEGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTA 766 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++YQTA++K H+PV ++AA +++ + +K++++ + I+++ PS+N VDF Sbjct: 767 YGAVTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDF 826 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + +N+I + L+AIK +G + R+I+E ++ F SL D C R+ S LN+R LESL+ Sbjct: 827 TIKNNQILFGLSAIKNLGDSAIRNIIENRNSLGIFKSLADLCDRLPSNVLNKRSLESLIH 886 Query: 888 AGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG----TFSDKITLE 941 GALD F +R QLL L+N+ ++A ++R + N+F ++ FSD + Sbjct: 887 CGALDEFSIDNNRAQLLSDLENVIEWASSRNRDRLSGQGNLFDSKEEFSNVAFSDS---Q 943 Query: 942 KFSVENSSV--RFENEQRVLGFYFSGHPLD-VYKP--ILRKMGIKGYEESVATIRGNNIR 996 VE+ S+ + + E+++LGFY S HPL + KP ++ + I EE+ + + Sbjct: 944 LAKVEDYSLIEKLKLEKQLLGFYLSDHPLKHLTKPAKLISPISISHLEETKDRTK---VS 1000 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 L M+ +Q TRKG R+ V + + EA FP Sbjct: 1001 LVGMIPDLKQITTRKGDRMAIVQLEDLSGSCEAIVFP 1037 >gi|328554543|gb|AEB25035.1| DNA polymerase III DnaE [Bacillus amyloliquefaciens TA208] gi|328912947|gb|AEB64543.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3] Length = 1112 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/1035 (38%), Positives = 617/1035 (59%), Gaps = 56/1035 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQV S YSLL A S+ I+ + ++A+TD N ++ A+EF + + GI+P Sbjct: 2 SFVHLQVRSGYSLLNSAASVKEIVTQAKELGYSSLALTDENVMYGAIEFYKACKSHGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG I + T P +VLL T GYQ L+++ S + + +G Sbjct: 62 IIGLTASIYTDE---------TELEARP-LVLLAETNTGYQNLLKISSALQSIAKGGMKR 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAF----FFNSSQVAEKRLLTFKKLFGD-RLYV 184 + W++ EGLI +T G +G I+ F + +VAE F++LFG+ R Y+ Sbjct: 112 K----WMKSY-HEGLIAITPGENGYIESLLQAGEFEEAVRVAE----GFRELFGEGRFYL 162 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Q +G++ E ++++L+ E+ + A + ++ +ED +A+ L A+ +D Sbjct: 163 GYQPFKGHETLSE-EILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGE--KWED 219 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPILPRFIEKECD 301 + PD YL+ EM +I+ PEA++ +A++C + Q P P K D Sbjct: 220 QSGDLPDLYLRPPEEMENIYMKNPEAVKAAARVAQQCQVDVSLGQTQLPSFPAPDGKSAD 279 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D E +E GL +R G + +RL++EL+VI RMKFS YFLIV Sbjct: 280 DYLAEVCHE-------GLRLRF-------GTPDERAVRRLEYELDVIRRMKFSDYFLIVW 325 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+++A + I GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DID Sbjct: 326 DFMKYAHEKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDID 385 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F RRDEVI+YVQNKYG VAQIITFG+L AKAALRD GR + + D+L +LIP+ Sbjct: 386 FPDTRRDEVIQYVQNKYGSMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPS 445 Query: 482 DPAHPVSLQAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P ++L+ S RL++ +V ++ +I++K+EGL RH STHAAG+V+ PLS Sbjct: 446 KPG--MTLEEARRQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLS 503 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 ++VP+ ++ + +TQ+ M +E GL+K DFLGL+ LTL++ + + K+D S Sbjct: 504 EVVPL-QEGHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFS 562 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I + D +T+ LL+ T GIFQLESSGMR L+ ++P +EDI+A+ +LYRPGP++NI Sbjct: 563 EISYQDEKTFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIP 622 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 ++ +RK+G+ ++ H + +L +T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ K Sbjct: 623 LFIDRKHGRARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSK 682 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I YQ A++ Sbjct: 683 KQKDILDRERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYL 742 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP+ F+ +T + N +KI ++ +A+ +Q++PPSVN F + + YSL Sbjct: 743 KAHYPLYFMCGLLTSVIGNEDKISQYLHEAKGSGLQVLPPSVNKSGFPFAPENGAVRYSL 802 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIK VG + + I +A KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F +R Sbjct: 803 RAIKNVGVSAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRA 862 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRV 958 LL S+D ++A+ + + +F E + K + E+F + + +RFE E Sbjct: 863 ALLASVDVALEHAELFRAD--DDQMGLFLEESFSIKPKYVEAEEFPLVD-KLRFEKE--A 917 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG YFS HPL ++ +L+K G + ++ +G + + A++ + +T+ G + ++ Sbjct: 918 LGVYFSSHPLSAFRNLLKKRGAQAIATALQMPKG-QLSIGALLAGIKTIRTKTGQHMAFL 976 Query: 1019 TFSEPAKEYEANFFP 1033 T S+ E EA FP Sbjct: 977 TLSDETGEMEAVVFP 991 >gi|14195653|sp|O51526|DPO3A_BORBU RecName: Full=DNA polymerase III subunit alpha Length = 1147 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/976 (41%), Positives = 596/976 (61%), Gaps = 38/976 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 7 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 66 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 67 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 121 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 122 PRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 180 Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + D E V Y+ EL PL A N+S +++ ED A D+++ + S ++ Sbjct: 181 HGIKDQDIVNERLV---KYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 237 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301 R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + Sbjct: 238 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 297 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 298 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 347 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 407 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 467 GPK--VSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 525 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIK 582 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 583 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 642 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK Sbjct: 643 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 702 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++ Sbjct: 703 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 762 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 763 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 822 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 823 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 882 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956 L ++LD++ + + N+ ++F + + F + S E+ Sbjct: 883 KTLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 942 Query: 957 RVLGFYFSGHPLDVYK 972 +LGFY SGHPLD YK Sbjct: 943 ELLGFYVSGHPLDPYK 958 >gi|313682047|ref|YP_004059785.1| DNA polymerase iii, alpha subunit [Sulfuricurvum kujiense DSM 16994] gi|313154907|gb|ADR33585.1| DNA polymerase III, alpha subunit [Sulfuricurvum kujiense DSM 16994] Length = 1179 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1047 (37%), Positives = 619/1047 (59%), Gaps = 47/1047 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL +H+ YSLL+GA ++ + ++ ++A++D N+F A++F Q+ AG++ Sbjct: 5 PPFTHLHLHTEYSLLDGANKISALAARVKELGMTSVAMSDHGNMFGAIDFYQQMRGAGLK 64 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + I ++L G + L GY+ L+ L S+ Y+ + Sbjct: 65 PIIGMEAYIHNGEDL-----GDKTIKQRFHVCLFAKNEAGYKNLMYLSSQAYI-NGFYYF 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ----------VAEKRLLTFKKLF 178 RI L+E +EG+I + G ++ NS + A++ L ++++F Sbjct: 119 PRINKQLLRE-NSEGIICTSACLQGEVNWHLNTNSERNVKNGALGYDEAKRIALEYREIF 177 Query: 179 GDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 GD Y+ + RH D+ + + QV++++ + L+ATN++ + +D + H+ M + + Sbjct: 178 GDDFYMEIMRHGIADQLFIDEQVIRISQETNIKLIATNDTHYTYADDAQYHEAFMCIGMN 237 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R + + Y+K+ +M +F+D+PEAL NT EI +C L++ P P F Sbjct: 238 KLYDDPKRMRHSVHEFYIKSPEQMARLFADIPEALYNTQEIVDKCQLELKLGNPTPPNF- 296 Query: 297 EKECDDIQKEEENELR-------NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 K + +EE E+ ++ GLE RL + + H + YR+RL+FE+ VI Sbjct: 297 -KFTTEYAREEGLEIAEDSEYFIHRCRIGLEERLIH--VPQTRHTE-YRERLEFEMEVIN 352 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +MKF GY LIV DF++ AK+ I VGPGRGS AGS+ AYAL ITDIDP+++ LLFERFLN Sbjct: 353 QMKFPGYMLIVWDFVREAKRMGIAVGPGRGSAAGSLVAYALEITDIDPMKYDLLFERFLN 412 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD D+DF Q RR E+I YV KYG E+VAQIITFGSL AK +RDV R L+MP Sbjct: 413 PERVSMPDIDMDFMQARRGEIIDYVVQKYGREQVAQIITFGSLLAKGVIRDVARVLEMPL 472 Query: 470 SQVDRLCKLIPNDPAHPVSLQ---------AIADDSRFREARLADPSVDRLLEISQKLEG 520 SQ D + KLIP++ ++ + A + + +E D R+ E S+KLEG Sbjct: 473 SQADMMAKLIPDELGITLNGKTKGGEFKPGAFQKEPKIQELIENDAQAMRVWEFSKKLEG 532 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R+A HAAG+VI + PL + P+Y+ + VTQ+++ ++E LIKFDFLGLKTL Sbjct: 533 LKRNAGMHAAGVVISNEPLWKKTPIYKPSGEETFVTQYSLNYLEDIDLIKFDFLGLKTLD 592 Query: 581 LLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ ++ + +R K V+ I +D + Y ++ + T+G+FQ+ESSGM+ + ++P Sbjct: 593 VIDNAIKLIKKRYNKEVNWHTIDENDPKVYEIIQSGDTIGMFQIESSGMQDLNKRLKPSS 652 Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 ED+IA+++LYRPGP+++ ++ + RK+G++ I P ++P+LK T GVI+YQEQVMQ Sbjct: 653 FEDLIAVLALYRPGPMESGMLDDFIERKHGRQAISYTFPSMEPILKPTYGVIVYQEQVMQ 712 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 I Q + G+SL AD++RRAMGKK EEM K + F GA+ G+ A +F+L+ KFA Sbjct: 713 IVQTVGGFSLGGADIVRRAMGKKKIEEMQKYNKEFSEGAANQGLDYKKASELFDLIEKFA 772 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 YGFNKSH+AAYA++++QTAW+KT+YP EF+AA +T E DN +K+ K+ +A++ I + Sbjct: 773 GYGFNKSHSAAYAMVTFQTAWLKTYYPQEFMAALLTSEKDNTDKVVKYIDEAKRMKIFLG 832 Query: 818 PPSVNTPCVDF----KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873 P +N ++F K ++I + L AIKGVG I+EA ++ F ++DF +R++ Sbjct: 833 APDINHSQLEFSAITKDDQDQILFGLGAIKGVGEAAVESILEARSEGEFKDIQDFINRIE 892 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 +K+N++V+E ++ AG LD FGYSR LL+ ++ + + A+ + + ++F ++ Sbjct: 893 PQKVNKKVIECIIKAGGLDHFGYSRRALLEQVETLVETAKKGSSLKKDAQFSLFGDDEEV 952 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + ++ L+ + + E+ LGFY SGHPLD Y+ + + E G+ Sbjct: 953 TAVELNLKNMDEFDLKTLLDFEKDTLGFYVSGHPLDNYRDQIDAINYTLSSEIENIADGS 1012 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 + V +K ++KGS G V+ Sbjct: 1013 SAIFIGKVEEITKKMSKKGSMFGLVSL 1039 >gi|167628221|ref|YP_001678720.1| DNA polymerase iii alpha subunit, putative [Heliobacterium modesticaldum Ice1] gi|167590961|gb|ABZ82709.1| DNA polymerase iii alpha subunit, putative [Heliobacterium modesticaldum Ice1] Length = 1208 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1083 (39%), Positives = 627/1083 (57%), Gaps = 82/1083 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA ++ ++D+ A PA+AITD ++ +EF +KA A G++PI Sbjct: 15 FVHLHVHSEYSLLDGAARIDKLVDRAAELDMPALAITDHGVMYGVIEFYKKAKARGVKPI 74 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + L Q + +VLL EGY+ L LVS+ + + R Sbjct: 75 IGCEVYVASRTMLDRDPQKDS---DQHHLVLLAKDIEGYRNLTALVSQAHT-EGFYYKPR 130 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L ++GLI L+ +G I R + + A +R ++ +FG D Y+ LQ H Sbjct: 131 VDHDRLAR-HSKGLIALSACLAGEIPRLLLNSQERQARERAAFYRDIFGCDNYYIELQDH 189 Query: 190 RGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D + QV ++LA L LVATN+ ++ +D DVL+ + + +R Sbjct: 190 ---DIPAQKQVNRSLIRLAGELGLGLVATNDVHYVERKDAYIQDVLLCIQMGKTLQDTER 246 Query: 246 PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDI 303 + + YLK+ EM +F ++PEAL N++ IA C LP + I E I Sbjct: 247 MKFDGAEFYLKSAREMAMLFGEVPEALFNSLAIAEACDLQFDFSKQHLPAYPIPDEPAFI 306 Query: 304 QKEEENELR-------NKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSG 355 Q E+E A L +QG +G +D YR+RL FEL I RM F+G Sbjct: 307 QWRREHERAPWPGLPWGDAEQYLTYLCSQGMTWRGCAKRDDYRRRLAFELQTICRMGFAG 366 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DF +A++ I VGPGRGS AGS+ AY L ITDIDP+ ++LLFERFLNP+R+SM Sbjct: 367 YFLIVQDFCAFARREGILVGPGRGSAAGSLVAYVLGITDIDPIEYNLLFERFLNPERISM 426 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD DIDF RR EVI YV +KYG +RVAQIITFG++ A+AA+RDVGR L +P + VD++ Sbjct: 427 PDIDIDFDFVRRSEVIDYVVHKYGSDRVAQIITFGTMAARAAVRDVGRVLNLPLADVDKV 486 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K IP + + +AI R A D + L+E ++ +EG+ RHASTHAAG+VI Sbjct: 487 AKAIPAELGMTIE-KAIEISPELR-ALCQDQRISHLVETARAIEGMPRHASTHAAGVVIA 544 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594 PL +P+ R + TQF +E+ GL+K D LGLKTLTL+ +D + + RG+ Sbjct: 545 PSPLIDYLPVQRGADGGV-TTQFPKDTVEEIGLLKMDLLGLKTLTLIGDVIDKIRRSRGL 603 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++ L +P DD +T+ LL+ +LG+FQLESSG+R L ++P+ +DIIALV+LYRPGP Sbjct: 604 QLKLKDLPLDDPKTFQLLSRADSLGVFQLESSGLRAILRELKPNSFDDIIALVALYRPGP 663 Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 + + +V + RK+G+ + +HP ++P+LK+T GVI+YQEQVM+IA L+G++L EAD+ Sbjct: 664 LQSGMVDDFIRRKHGQTTVQYLHPALEPILKDTYGVILYQEQVMRIASELAGFTLGEADM 723 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK + + +++F+ G + + IS+ A +IF+L+ FA YGFNKSH+AAYA+I Sbjct: 724 LRRAMGKKKPDVIAGLRQQFVEGCAAHHISEKTAGDIFDLMEFFAGYGFNKSHSAAYALI 783 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830 +YQTA++K +YPVEF+A +T D+ EK+ ++ + ++ I+++PP VN +DF V Sbjct: 784 AYQTAYLKANYPVEFMAGLLTSVADSSEKVAQYVDECQRLGIRVLPPDVNASEIDFSVVA 843 Query: 831 ----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 G +I + LAA+K VG I+ A PF SL+DFC+R+D+++ NRRVLESL Sbjct: 844 DPLTGGLQIRFGLAAVKNVGRGAIDAILLARETGGPFTSLDDFCTRIDNRQANRRVLESL 903 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------------AHEKG 932 + AGAL G R LLQ LD + A +++ N+F E G Sbjct: 904 IKAGALSSLG-KRRPLLQILDKCMEVAARRQRDLATGQMNLFDFGGFGGEGGRGEPFEAG 962 Query: 933 TFSDKITLEKFSVENSSVRFEN------------------EQRVLGFYFSGHPLDVYKPI 974 SD FS +S + E E+ +LG YFSGHPL+ +P Sbjct: 963 ALSD------FSGFSSGLSAETAVPLPEIADFPHREILAMEKELLGIYFSGHPLEELRPW 1016 Query: 975 LRKMGIKGYEESVATIRGNN----IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 L + ++A I+ +N ++L ++ + ++ T+KG + + T + + + Sbjct: 1017 LEQQ----ISMTIARIQPDNDQQKVKLGGVIHALRRTTTKKGQLMAYFTLEDWSGGVDVL 1072 Query: 1031 FFP 1033 FP Sbjct: 1073 VFP 1075 >gi|313114111|ref|ZP_07799663.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310623520|gb|EFQ06923.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 1169 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1062 (36%), Positives = 602/1062 (56%), Gaps = 54/1062 (5%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ L + FVHL +H+ YSLL+GA ++ ++D++ Q AIA TD ++ ++F + Sbjct: 1 MSEALPNTRPFVHLHIHTEYSLLDGACRIDQLMDRVKECGQTAIACTDHGVMYGCVQFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AGI+PIIGC++ + + N+ ++LL GY+ LI++VS + Sbjct: 61 AAKKAGIKPIIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAAF 116 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + +G S L E EGLI L+ +G + +A + A+ L ++ LFG+ Sbjct: 117 V--EGFYSKPRIDKELLEKYHEGLICLSACLAGEVPQAILAGDYERAKAAALWYRDLFGE 174 Query: 181 R-LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Y+ LQ H D Q+++LA +P+ ATN+S +L +ED + +L+ + Sbjct: 175 ENYYIELQDHGLEEDNTVLPQLIKLARETGIPMAATNDSHYLRKEDAKMQGILLCIQTGK 234 Query: 239 VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + D+ D Y+K EM +FS +PEA ENT +IA +C+F +P + Sbjct: 235 TIQDADKMEFQTDEFYVKTTDEMYELFSMVPEACENTAKIAEQCNFDFDFGHTKIPYY-- 292 Query: 298 KECDDIQKEEENELRNKAV------AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + N + N+A GLE R Q + RL++E+ V+ +M Sbjct: 293 --------KAPNGMDNQAFFEKLCWEGLERRYGPDV------PQANKDRLEYEIGVVKKM 338 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 ++ Y+LIV D++ +AK IPVGPGRGSGAGS+ AY++ ITDIDP+R++L+FERFLNP+ Sbjct: 339 GYTNYYLIVWDYVNYAKSQGIPVGPGRGSGAGSIAAYSVGITDIDPIRYNLIFERFLNPE 398 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFD+DFC +RR EVI YV KYG + VAQI+TFG++ A+ A+RDVGR + +PY Q Sbjct: 399 RVSMPDFDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQ 458 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 VD + K +P + + +A+ + DP V L++ + K+EG+ RHASTHAAG Sbjct: 459 VDVVAKQVPMELKMTLK-RALEVSPELKRMYDTDPQVTELIDTALKVEGMPRHASTHAAG 517 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI P +P+ + LPVTQFNM IE+ GL+K DFLGL+TLT++ + + + Sbjct: 518 VVITPEPTDYYLPLATN--DGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIHDAETAVQK 575 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 + + + +DD +TY +L T G+FQLESSGM+Q L G+QP +EDIIAL+SLYR Sbjct: 576 HHPEFSIQKLDYDDPDTYRMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDIIALISLYR 635 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D+I Y ++ +KI P + +L T G I+YQEQVMQI + L+G+S +AD Sbjct: 636 PGPMDSIPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQAD 695 Query: 712 VLRRAMGKKIKEEMDKQKERFISGAS----------KNGISKTIAVNIFELLAKFADYGF 761 +RRAM KK M+ ++E F+ G + NGIS+ +A I++ ++ FA Y F Sbjct: 696 NVRRAMSKKKHAVMEAEREHFVYGCTDPGNECPGCVANGISEKVANEIYDEMSSFASYAF 755 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSHAA YA +++QTA++K HYP EF+AA +T +DN +K+ ++ + + I+++PP V Sbjct: 756 NKSHAACYAYVAFQTAYLKCHYPSEFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDV 815 Query: 822 NTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 N F G +I + L A+K VG ++++ +KP+ SL DFC R+ +LNRR Sbjct: 816 NVSNGGFTADGSGQIRFGLNAVKNVGRNLIENVVKGRQNKPYTSLYDFCKRMHGNELNRR 875 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFS 935 +E L+ AGA D G +R +++++ I K + + + ++F+ + G Sbjct: 876 AVECLIKAGAFDHLGNNRHSHVEAVEGILKSIETDSRRNLDGQLDLFSVMSGEAQGGASE 935 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIR- 991 D +++ + + E+ V G Y SGHPLD Y+ ++ IK A +R Sbjct: 936 DNYEIKQLPEYSHKELLQQEKEVSGLYLSGHPLDAYREQSARIASHTIKDLTGEDAHVRD 995 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G +R+ VV + T+ S + + + + E FP Sbjct: 996 GEKVRIVCAVVKSRMMTTKSNSMMAFTSVEDLTGTMEVIVFP 1037 >gi|223888850|ref|ZP_03623441.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 64b] gi|223885666|gb|EEF56765.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 64b] Length = 1161 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/976 (41%), Positives = 596/976 (61%), Gaps = 38/976 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + D E V Y+ EL PL A N+S +++ ED A D+++ + S ++ Sbjct: 195 HGIKDQDIVNERLV---KYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301 R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 481 GPK--VSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIK 596 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++ Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956 L ++LD++ + + N+ ++F + + F + S E+ Sbjct: 897 KTLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956 Query: 957 RVLGFYFSGHPLDVYK 972 +LGFY SGHPLD YK Sbjct: 957 ELLGFYVSGHPLDPYK 972 >gi|59800539|ref|YP_207251.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA 1090] gi|240013392|ref|ZP_04720305.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae DGI18] gi|240120463|ref|ZP_04733425.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae PID24-1] gi|59717434|gb|AAW88839.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA 1090] Length = 1144 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1045 (38%), Positives = 590/1045 (56%), Gaps = 62/1045 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 P+ + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PVGAADVWIGN------PNAPDKPF----RAMLVIRNDAGYLRLSELLTEAYVGQDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F++ +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DCLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + P+SL + L D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLSLDDAMKAQPQIQELLEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGK 526 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 527 ISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTA 581 Query: 596 ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRP Sbjct: 582 GDIVDVGKIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRP 641 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+ Sbjct: 642 GPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADL 700 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+I Sbjct: 701 LRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALI 760 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VG 831 SYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 761 SYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYP 820 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 D +I Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ GA Sbjct: 821 DMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGA 880 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFS 944 D +R LL ++D N K N A++ G F + + L Sbjct: 881 FDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAP 931 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVS 1003 + + S + E+ V+GFY SGHP Y +R++ + ++ +++RLA V + Sbjct: 932 MWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTA 987 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028 + ++G +I +V+ + + + E Sbjct: 988 VRTMMGKRG-KIAFVSLEDSSGQAE 1011 >gi|15594924|ref|NP_212713.1| DNA polymerase III subunit alpha [Borrelia burgdorferi B31] gi|2688500|gb|AAC66944.1| DNA polymerase III, subunit alpha (dnaE) [Borrelia burgdorferi B31] Length = 1161 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/976 (41%), Positives = 596/976 (61%), Gaps = 38/976 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + D E V Y+ EL PL A N+S +++ ED A D+++ + S ++ Sbjct: 195 HGIKDQDIVNERLV---KYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301 R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 481 GPK--VSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIK 596 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++ Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956 L ++LD++ + + N+ ++F + + F + S E+ Sbjct: 897 KTLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956 Query: 957 RVLGFYFSGHPLDVYK 972 +LGFY SGHPLD YK Sbjct: 957 ELLGFYVSGHPLDPYK 972 >gi|221218188|ref|ZP_03589654.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 72a] gi|225549589|ref|ZP_03770555.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 118a] gi|221192136|gb|EEE18357.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 72a] gi|225369866|gb|EEG99313.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 118a] Length = 1161 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/976 (41%), Positives = 596/976 (61%), Gaps = 38/976 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + D E V Y+ EL PL A N+S +++ ED A D+++ + S ++ Sbjct: 195 HGIKDQDIVNERLV---KYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301 R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++ Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956 L ++LD++ + + N+ ++F + + F + S E+ Sbjct: 897 KTLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956 Query: 957 RVLGFYFSGHPLDVYK 972 +LGFY SGHPLD YK Sbjct: 957 ELLGFYVSGHPLDPYK 972 >gi|312147881|gb|ADQ30540.1| DNA polymerase III subunit alpha [Borrelia burgdorferi JD1] Length = 1161 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + D E V Y+ EL PL A N+S +++ ED A D+++ + S ++ Sbjct: 195 HGIKDQDIVNERLV---KYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301 R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++ Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956 Query: 957 RVLGFYFSGHPLDVYK 972 +LGFY SGHPLD YK Sbjct: 957 ELLGFYVSGHPLDPYK 972 >gi|299770508|ref|YP_003732534.1| DNA polymerase III DnaE [Acinetobacter sp. DR1] gi|298700596|gb|ADI91161.1| DNA polymerase III DnaE [Acinetobacter sp. DR1] Length = 1187 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1017 (37%), Positives = 594/1017 (58%), Gaps = 56/1017 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + ++++ DQ PA+A+TD +NL +A++F GI+P+ Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNACLKKGIKPL 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + +D + LL + G++ L E+VSR ++ +G+Q Sbjct: 63 LGSTIRLDDAQH---------------RATLLAMSDVGWKSLTEIVSRGFI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E + +++L G + + ++ Q A L + + FG+R+Y+ L R Sbjct: 106 PCVKKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTR 163 Query: 189 HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 DR E +Q LA + + +VA N+ F+ +ED+EAH+ + +A V++ Sbjct: 164 T---DRPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNR 220 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR+ +P+ + K EM+ +FSD+P A+ENT IA+RC+ LQ+ LP + + I Sbjct: 221 RPRIYSPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTI 280 Query: 304 QKEEENELRNKAVAGLEVRLAQ--GAIAKGYHAQD----YRQRLDFELNVIARMKFSGYF 357 + + + GLE RL +G + Y +R+D+E+ +I +M F GYF Sbjct: 281 ----DTYFEHLSKVGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYF 336 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPD Sbjct: 337 LIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPD 396 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K Sbjct: 397 FDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISK 456 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAAG 531 ++P P AI + + ++ + +PS + E++ KLEG+ R+ HA G Sbjct: 457 MVPTKPLGVDLATAIDMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGVTRNTGKHAGG 515 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + + Sbjct: 516 VVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINK 575 Query: 592 R---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 ++++ +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VS Sbjct: 576 NRDSNDQLNILHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVS 635 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + +R +G + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L Sbjct: 636 LYRPGPMDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLG 694 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ++ F+ GA++ GI ++ A +IF+ + KFA YGFNKSHAAA Sbjct: 695 GADLLRRAMGKKKPEEMVKQRQIFLEGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAA 754 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++Y TAW+K HYP EF+AA MT EM N + + D R N++++PPSVN F Sbjct: 755 YALVAYHTAWLKAHYPAEFMAAVMTSEMQNTDSVVFLIDDCRNNNLEVLPPSVNMSTYHF 814 Query: 829 KVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886 +++ I Y L AIKGVG + ++++ P+ L DFC R+D KK+N+R LE+L+ Sbjct: 815 HASNDKTIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALI 874 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSV 945 AGALDC G R L+ L + A+ NR + ++F E+ ++ +S Sbjct: 875 RAGALDCLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWSD 934 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 E VR + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 935 E---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVI 988 >gi|226321045|ref|ZP_03796588.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 29805] gi|226233569|gb|EEH32307.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 29805] Length = 1161 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + D E V Y+ EL PL A N+S +++ ED A D+++ + S ++ Sbjct: 195 HGIKDQDIVNERLV---NYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301 R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++ Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956 Query: 957 RVLGFYFSGHPLDVYK 972 +LGFY SGHPLD YK Sbjct: 957 ELLGFYVSGHPLDPYK 972 >gi|160945128|ref|ZP_02092354.1| hypothetical protein FAEPRAM212_02647 [Faecalibacterium prausnitzii M21/2] gi|158442859|gb|EDP19864.1| hypothetical protein FAEPRAM212_02647 [Faecalibacterium prausnitzii M21/2] Length = 1169 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1046 (36%), Positives = 599/1046 (57%), Gaps = 42/1046 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA ++ +++++ Q AIA TD ++ ++F + A AGI+PI Sbjct: 11 FAHLHIHTEYSLLDGACRIDQLMERVKECGQTAIACTDHGVMYGCVQFYKAAKKAGIKPI 70 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + N+ ++LL GY+ LI++VS ++ +G S Sbjct: 71 IGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAGFV--EGFYSKP 124 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L E EGLI L+ +G I +A + A+ L ++ LFG + Y+ LQ H Sbjct: 125 RVDKQLLEQYHEGLICLSACLAGEIPQAILAGDYERAKATALWYRDLFGAENYYIELQDH 184 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D Q+++L+ +P+ ATN++ +L +ED + +L+ + + DR Sbjct: 185 GLKEDSTVLPQLIKLSRETGIPMAATNDAHYLRKEDAKMQSILLCIQTGKTIQDADRMEF 244 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D Y+K EM +FS +PEA NT +IA +C+F + +P + + D Q Sbjct: 245 QTDEFYVKTTDEMYELFSMVPEACANTAKIAEQCNFDFEFGHTKIPYYKAPDGMDNQAYF 304 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E + GLE R Q RL +E++V+ M ++ Y+LIV D+I +A Sbjct: 305 EKLCWD----GLERRYGPDV------PQANIDRLKYEISVVKTMGYTNYYLIVWDYINFA 354 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +RR Sbjct: 355 KSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYERR 414 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + KL+P + + Sbjct: 415 QEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAKLVPMELKMTL 474 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ S ++ DP V L++ + K+EG+ RHASTHAAG+VI P +P+ Sbjct: 475 K-RALEVSSELKKLYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPEPTDYYLPLAT 533 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 + LPVTQFNM IE+ GL+K DFLGL+TLT+++ + + ++ + + ++ +DD + Sbjct: 534 N--DGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAEVAVQKQHPEFSIRMLDYDDPD 591 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L T G+FQLESSGM+Q L G+QP +ED+IAL+SLYRPGP+D+I Y ++ Sbjct: 592 TYKMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDSIPTYLRNRHE 651 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +KI P + +L T G I+YQEQVMQI + L+G+S +AD +RRAM KK M+ Sbjct: 652 PDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAMSKKKHAVMEA 711 Query: 728 QKERFISGASK----------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 ++E F+ G ++ NGI + +A I++ ++ FA Y FNKSHAA YA +++QTA Sbjct: 712 EREHFVHGCTEPGHECPGCVANGIPEQVANQIYDEMSSFASYAFNKSHAACYAYVAFQTA 771 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIY 836 ++K HYP +F+AA +T +DN +K+ ++ + + I+++PP VN F DN +I Sbjct: 772 YLKCHYPSQFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNISNGGFTADDNGQIR 831 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 + L A+K VG + + +KP+ SL DFC R+ +LNRR +ESL+ AGA DCFG Sbjct: 832 FGLNAVKNVGRNLIENAVTERKEKPYTSLYDFCKRMHGSELNRRAVESLIKAGAFDCFGS 891 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-----SDKITLEKFSVENSSVR 951 +R ++++++ I K + + ++F+ G D + + + Sbjct: 892 NRHSMVEAVEGILKSIETDSRRNLEGQLDLFSVMSGEVQQSPQEDVYEIRPLAEYTPAEL 951 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIR-GNNIRLAAMVVSKQQK 1007 + E+ V G Y SGHPLD Y+ ++G IK A ++ G +R+ VV + Sbjct: 952 LQQEKEVSGLYLSGHPLDAYREKSARIGSHTIKDLTGEDAHVQDGEKVRIVCAVVKNRMM 1011 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ S + + + + E FP Sbjct: 1012 TTKSNSMMAFTSVEDLTGTMEVIVFP 1037 >gi|312149376|gb|ADQ29447.1| DNA polymerase III subunit alpha [Borrelia burgdorferi N40] Length = 1161 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + D E V Y+ EL PL A N+S +++ ED A D+++ + S ++ Sbjct: 195 HGIKDQDIVNERLV---NYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301 R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++ Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956 Query: 957 RVLGFYFSGHPLDVYK 972 +LGFY SGHPLD YK Sbjct: 957 ELLGFYVSGHPLDPYK 972 >gi|162452023|ref|YP_001614390.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56'] gi|161162605|emb|CAN93910.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56'] Length = 1212 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1070 (38%), Positives = 605/1070 (56%), Gaps = 68/1070 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + F+HL VHS YSLL+G+L + ++ + + A+A+TD N+F A++ + GI Sbjct: 2 TAEFIHLHVHSQYSLLDGSLRVKDLAARAKSLGMRAVALTDHGNMFGAIQHYKACKDQGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLLDQG 125 IIGC++++ ++ P +VLL ++ EGY+ L+ +VS+ ++ Sbjct: 62 GAIIGCEVNVARSWGTAAGQVSRSGVDETPVDHLVLLAASEEGYKNLVRIVSQGHVDPAS 121 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184 + + L + + GLI LTG G + + + L + F LYV Sbjct: 122 GLAPSVRLDTVAQ-HNAGLIGLTGCMGGVVAQRILEQGEGEGREALSRLRDCFQPGSLYV 180 Query: 185 NLQRHRGYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H ++ + ++ A LPLVATN++ F + ED E L +A + ++ Sbjct: 181 ELQDHGLVEQSVLNGILARAAGDLGLPLVATNDAHFGAREDGEGQLYLSCIAANRTFAEA 240 Query: 244 DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAPILPRFIEKECD 301 + +LK EM+ +F D P+A+ +T+EIA RCS + L++ P+LP F Sbjct: 241 SAAHHGSFEMFLKPADEMMHLFRDHPQAVRSTLEIAERCSTLKLKLGKPMLPTF---PLP 297 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGA-IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + R+ A GL RLAQ A + YR RLD ELNVI +M F GYFLIV Sbjct: 298 SGFADSASYFRHVAHDGLTKRLAQIAQTGRKVDEATYRARLDVELNVIVQMDFPGYFLIV 357 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++AK + IPVGPGRGSGAGS+ AYA+ ITD+DPL ++LLFERFLNP+R+SMPDFD+ Sbjct: 358 WDFIKYAKDHGIPVGPGRGSGAGSLVAYAMEITDLDPLPYNLLFERFLNPERVSMPDFDV 417 Query: 421 DFCQDRRDEVIRYVQNKYGHE----RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFC DRRDEVI YV KY E V QI TF L+A++ ++DV RA+ P ++ ++ Sbjct: 418 DFCMDRRDEVISYVTKKYSKEADKPSVGQIATFHELKARSVIKDVARAMAFPANEAQKIA 477 Query: 477 KLIP-NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 LIP P ++ +A+ + + + + +DP+V LL+ +QKLEGL RHA HAAG+VI Sbjct: 478 SLIPQKSPGIMYTIPEALEIEPKLKALKESDPTVAELLKQAQKLEGLTRHAGMHAAGVVI 537 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-------D 587 + PL VP +++ + VTQ+ E AGL+KFDFLGLKTLT++ ++ D Sbjct: 538 SEGPLWDHVPCFKN--GEQLVTQYYKDDAELAGLVKFDFLGLKTLTVIDIAVRLVNARPD 595 Query: 588 FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 A+ G + D++ +P DD TY LL + T G+FQLESSGM+Q + ++PD EDI+A V Sbjct: 596 LAAKEGKRFDVNTVPLDDTATYALLQSGETTGVFQLESSGMQQLFKDLKPDAFEDIVAAV 655 Query: 648 SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +LYRPGP+ +V + + K+G++ I +HPL+D +L+ T GVI+YQEQVMQIAQ L+GY Sbjct: 656 ALYRPGPLGTGMVKDFVDCKHGRKPIEKMHPLVDELLQPTYGVIVYQEQVMQIAQKLAGY 715 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQK F+ G+ KNG+ A IF LL FA YGFNKSH Sbjct: 716 TLGGADLLRRAMGKKKPEEMAKQKATFVDGSLKNGVKAEDAERIFGLLEYFAGYGFNKSH 775 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA+++YQTA++K HYPVEFL A MT + D +EK+ + + R + ++I+PP +N Sbjct: 776 SAAYALLTYQTAYLKAHYPVEFLCALMTADRDKIEKVVRIIAEGRAWGVEILPPEINESK 835 Query: 826 VDFKVG--------------------------DNRIYYSLAAIKGVGTTTARHIMEA-SA 858 DF V D +I + + AI+GVG + I+EA A Sbjct: 836 TDFTVVYSAKPATNGKRVAGTRRGGSRVRDPYDPKIRFGMGAIRGVGESALEAILEARDA 895 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF----GYSRMQLLQSLDNIQKYAQW 914 F L DF RVD +++N+ V E+LV GA D G SR + +D + ++ Sbjct: 896 GGVFADLFDFAERVDPRRVNKGVFEALVQCGAFDASLHARGISRARAFAGIDRALERSRS 955 Query: 915 VEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 K R + +FA + D T E + + + R E++ LGFY SGHPLD Sbjct: 956 ASKERNSAQIGLFAAVASKSEVRLDDYPTAEDWDLRETLSR---EKQSLGFYVSGHPLDR 1012 Query: 971 YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y L + + +R+ MV +++ + G G + F Sbjct: 1013 YGVDLNRFDVTAVSALAGMDAWARVRVGGMVEGYRERIFKGGG--GKIAF 1060 >gi|293608355|ref|ZP_06690658.1| DNA polymerase III [Acinetobacter sp. SH024] gi|292828928|gb|EFF87290.1| DNA polymerase III [Acinetobacter sp. SH024] Length = 1187 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1017 (38%), Positives = 594/1017 (58%), Gaps = 56/1017 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + ++++ DQ PA+A+TD +NL +A++F GI+P+ Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + +D + LL + G++ L E+VSR ++ +G+Q Sbjct: 63 LGSTIRLDDAQH---------------RATLLAMSNVGWKSLTEIVSRGFI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E + +++L G + + ++ Q A L + + FG+R+Y+ L R Sbjct: 106 PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAAPLLEAWIEKFGNRVYLALTR 163 Query: 189 HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 DR E +Q LA + + +VA N+ F+ +ED+EAH+ + +A V++ Sbjct: 164 T---DRPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDR 220 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR+ +P+ + K +EM+ +FSD+P A+ENT IA+RC+ LQ+ LP + + I Sbjct: 221 RPRLYSPEQHFKTSNEMIELFSDIPSAIENTYNIAKRCNVSLQLGTYFLPDYPIPDGFTI 280 Query: 304 QKEEENELRNKAVAGLEVRL--AQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYF 357 + + + GLE RL +G + Y +R+D+E+ +I +M F GYF Sbjct: 281 ----DTYFEHLSKVGLEERLDYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYF 336 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPD Sbjct: 337 LIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPD 396 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K Sbjct: 397 FDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISK 456 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAAG 531 ++P P AI + + ++ + +PS + E++ KLEG+ R+ HA G Sbjct: 457 MVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGG 515 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + + Sbjct: 516 VVIAPGKITDFSAVLCDEDGTSRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINK 575 Query: 592 RGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 D +S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VS Sbjct: 576 NRDSNDPLIISHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVS 635 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + +R +G + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L Sbjct: 636 LYRPGPMDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLG 694 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ++ F++GA++ GI ++ A +IF+ + KFA YGFNKSHAAA Sbjct: 695 GADLLRRAMGKKKPEEMVKQRQIFLAGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAA 754 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++Y TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN F Sbjct: 755 YALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHF 814 Query: 829 KVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886 D++ I Y L AIKGVG + ++++ P+ L DFC R+D KK+N+R LE+L+ Sbjct: 815 HASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALI 874 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSV 945 AGALDC G R L+ L + A+ NR + ++F E+ ++ +S Sbjct: 875 RAGALDCLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWSD 934 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 E VR + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 935 E---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVI 988 >gi|194097697|ref|YP_002000738.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae NCCP11945] gi|239998209|ref|ZP_04718133.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae 35/02] gi|240015834|ref|ZP_04722374.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA6140] gi|240112181|ref|ZP_04726671.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae MS11] gi|240114926|ref|ZP_04728988.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae PID18] gi|240117214|ref|ZP_04731276.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae PID1] gi|240122764|ref|ZP_04735720.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae PID332] gi|240124957|ref|ZP_04737843.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae SK-92-679] gi|240127469|ref|ZP_04740130.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae SK-93-1035] gi|254492986|ref|ZP_05106157.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae 1291] gi|260441259|ref|ZP_05795075.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae DGI2] gi|268594063|ref|ZP_06128230.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268598240|ref|ZP_06132407.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae MS11] gi|268600585|ref|ZP_06134752.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID18] gi|268602902|ref|ZP_06137069.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID1] gi|268681369|ref|ZP_06148231.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID332] gi|268683537|ref|ZP_06150399.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-92-679] gi|268685843|ref|ZP_06152705.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|291044605|ref|ZP_06570314.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] gi|293397724|ref|ZP_06641930.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae F62] gi|193932987|gb|ACF28811.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae NCCP11945] gi|226512026|gb|EEH61371.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae 1291] gi|268547452|gb|EEZ42870.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268582371|gb|EEZ47047.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae MS11] gi|268584716|gb|EEZ49392.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID18] gi|268587033|gb|EEZ51709.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID1] gi|268621653|gb|EEZ54053.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID332] gi|268623821|gb|EEZ56221.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-92-679] gi|268626127|gb|EEZ58527.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|291011499|gb|EFE03495.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] gi|291611670|gb|EFF40739.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae F62] gi|317163496|gb|ADV07037.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae TCDC-NG08107] Length = 1144 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1045 (38%), Positives = 590/1045 (56%), Gaps = 62/1045 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 P+ + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PVGAADVWIGN------PNAPDKPF----RAMLVIRNDAGYLRLSELLTEAYVGQDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F++ +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DCLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + P+SL + L D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLSLDDAMKAQPQIQELLEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGK 526 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 527 ISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTA 581 Query: 596 ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRP Sbjct: 582 GDIVDVGKIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRP 641 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+ Sbjct: 642 GPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADL 700 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+I Sbjct: 701 LRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALI 760 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 761 SYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYP 820 Query: 833 N-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 N +I Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ GA Sbjct: 821 NMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGA 880 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFS 944 D +R LL ++D N K N A++ G F + + L Sbjct: 881 FDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAP 931 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVS 1003 + + S + E+ V+GFY SGHP Y +R++ + ++ +++RLA V + Sbjct: 932 MWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTA 987 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028 + ++G +I +V+ + + + E Sbjct: 988 VRTMMGKRG-KIAFVSLEDSSGQAE 1011 >gi|240079974|ref|ZP_04724517.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA19] gi|268596113|ref|ZP_06130280.1| DNA polymerase III [Neisseria gonorrhoeae FA19] gi|268549901|gb|EEZ44920.1| DNA polymerase III [Neisseria gonorrhoeae FA19] Length = 1144 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1045 (38%), Positives = 590/1045 (56%), Gaps = 62/1045 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 P+ + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PVGAADVWIGN------PNAPDKPF----RAMLVIRNDAGYLRLSELLTEAYVGQDRNIH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F++ +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DCLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + P+SL + L D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLSLDDAMKAQPQIQELLEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGK 526 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 527 ISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNTA 581 Query: 596 ---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRP Sbjct: 582 GDIVDVGKIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRP 641 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+ Sbjct: 642 GPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADL 700 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+I Sbjct: 701 LRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALI 760 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 761 SYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYP 820 Query: 833 N-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 N +I Y+L AIKG G I+ A + F L DFC RV + +NRR LE+L+ GA Sbjct: 821 NMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGA 880 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFS 944 D +R LL ++D N K N A++ G F + + L Sbjct: 881 FDSIEPNRAMLLANID-------LAMDNADQKAAN--ANQGGLFDMMEDAIEPVRLIDAP 931 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVS 1003 + + S + E+ V+GFY SGHP Y +R++ + ++ +++RLA V + Sbjct: 932 MWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PTKLGRLKPQDSVRLAGFVTA 987 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYE 1028 + ++G +I +V+ + + + E Sbjct: 988 VRTMMGKRG-KIAFVSLEDSSGQAE 1011 >gi|218249957|ref|YP_002375087.1| DNA polymerase III subunit alpha [Borrelia burgdorferi ZS7] gi|226321885|ref|ZP_03797411.1| DNA polymerase III subunit alpha [Borrelia burgdorferi Bol26] gi|218165145|gb|ACK75206.1| DNA polymerase III subunit alpha [Borrelia burgdorferi ZS7] gi|226233074|gb|EEH31827.1| DNA polymerase III subunit alpha [Borrelia burgdorferi Bol26] Length = 1161 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + D E V Y+ EL PL A N+S +++ ED A D+++ + S ++ Sbjct: 195 HGIKDQDIVNERLV---NYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301 R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++ Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956 Query: 957 RVLGFYFSGHPLDVYK 972 +LGFY SGHPLD YK Sbjct: 957 ELLGFYVSGHPLDPYK 972 >gi|224533626|ref|ZP_03674215.1| DNA polymerase III subunit alpha [Borrelia burgdorferi CA-11.2a] gi|224513299|gb|EEF83661.1| DNA polymerase III subunit alpha [Borrelia burgdorferi CA-11.2a] Length = 1161 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + D E V Y+ EL PL A N+S +++ ED A D+++ + S ++ Sbjct: 195 HGIKDQDIVNERLV---NYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301 R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++ Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQAFKEYSYSELLGFEK 956 Query: 957 RVLGFYFSGHPLDVYK 972 +LGFY SGHPLD YK Sbjct: 957 ELLGFYVSGHPLDPYK 972 >gi|289422260|ref|ZP_06424114.1| DNA polymerase III subunit alpha [Peptostreptococcus anaerobius 653-L] gi|289157311|gb|EFD05922.1| DNA polymerase III subunit alpha [Peptostreptococcus anaerobius 653-L] Length = 1193 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1066 (37%), Positives = 618/1066 (57%), Gaps = 57/1066 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E++ F HL VH+ YSLL+G L+ ++ ++ + AITD +F A++F +K Sbjct: 1 MEENKDFCHLHVHTEYSLLDGFSRLDRLIPRLKELGMTSCAITDHGTMFGAIDFYKKCKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLD 123 GI+PIIGC++ + + +Q + S ++LL EGY+ LI++VS Y+ D Sbjct: 61 EGIKPIIGCEVYV----APRTLDQKDSVLDKYSSHLILLAENNEGYENLIKIVSDSYV-D 115 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182 R L++ ++G+I L+ +G + +A + + A + ++ +FG D Sbjct: 116 GFYYKPRTDKDQLRKY-SKGIICLSACLNGEVAKALLARNYENALNYAVEYRDIFGKDNF 174 Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q H+ D+ + +++++ +PLVATN++ ++ ED + DVLM +A + Sbjct: 175 YLEMQDHKLAEDKEVNAGLIKISKELGIPLVATNDAHYVYREDSKIQDVLMCIAMQKTLD 234 Query: 242 QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R + D Y+K+R EM +F +PEA++NT+EIA+RC+ + +P F E Sbjct: 235 DPSRMKFPNDEFYIKSREEMEGLFKFVPEAIDNTLEIAKRCNVEFDFNNYHIPTFKVPE- 293 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 EE+ LR GLE R + R RL+FE+N IA M + YFLIV Sbjct: 294 ---GYTEESYLRYLCQKGLEERYED-------ITDEIRDRLEFEINTIANMGYIEYFLIV 343 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +AK+NNI VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R++MPD DI Sbjct: 344 WDFINFAKENNIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVTMPDIDI 403 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC RR+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L + Y++VD + K IP Sbjct: 404 DFCYKRREEVIEYVKRKYGSDHVAQIITFGTMGAKLAIRDVGRVLDIAYNKVDAVAKEIP 463 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A + E +D V ++++S+KLEG+ RHASTHAAG+VI RP+ Sbjct: 464 FELNMTID-KAFDKNPTLTEMYESDQDVKEVIDVSRKLEGMVRHASTHAAGVVISKRPVH 522 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGV-- 594 VP+YR+ D TQF M +E+ GL+K DFLGL+TLT+++ +LD + RG Sbjct: 523 DYVPLYRN--QDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEINREDRGYTE 580 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 K+D S + +DD + Y LL++ TLG+FQLESSGMR ++ ++PD EDI+A +SL+RPGP Sbjct: 581 KIDFSKMDYDDPKVYELLSSGNTLGVFQLESSGMRNFMKQLKPDSFEDIVAGISLFRPGP 640 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D+I Y + KN E+ +H + P+L+ T G ++YQEQVMQ+ + L+GYS +D++R Sbjct: 641 MDSIPRYISFKNNPEEATYLHEKLRPILEVTYGCLVYQEQVMQVVRELAGYSFGRSDLVR 700 Query: 715 RAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFN 762 RAM KK + M+++++ FI G +NG+ + IA IF+ + FA Y FN Sbjct: 701 RAMSKKKMDVMEEERQYFIHGKFDDKGNIEIPGCIRNGVPEDIANQIFDDMIDFAKYAFN 760 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSHAAAY V++Y+TA++KT+YPVEF+AA MT + N +K+ ++ ++ + I+++PP +N Sbjct: 761 KSHAAAYGVLAYETAYLKTYYPVEFMAALMTSVIGNTDKVVEYMRECSKLGIEVLPPDIN 820 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRV 881 F V I + L A+K VG I+ E F + R+DS+ N+R Sbjct: 821 RSYSMFSVDKGHIRFGLVAVKNVGANVIDGIVKEREEGGEFTDFVNMIKRLDSRFTNKRA 880 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGT---FSD 936 +ESL+ GALD G +R LL S ++I +K ++F ++G D Sbjct: 881 IESLIKCGALDSLGETRASLLLSFEDILDSVSRDKKRNVEGQISLFDMVSDQGQDLGIID 940 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATI 990 +++ + + + E+ V+G Y SGHPL Y+ IL + IK +E + Sbjct: 941 NTSIKHYDEFKQKIILDMEKEVMGMYISGHPLSEYEDILARRTSINNFKIKELKEDPKLL 1000 Query: 991 RGNNIR---LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + N + + +VVS + T++ + +V + E FP Sbjct: 1001 QELNDQEHIVGGIVVSSRLMTTKRNEMMAFVEIEDIFGSLEVVVFP 1046 >gi|325121909|gb|ADY81432.1| DNA polymerase III, alpha chain [Acinetobacter calcoaceticus PHEA-2] Length = 1187 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1018 (38%), Positives = 594/1018 (58%), Gaps = 58/1018 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + ++++ DQ PA+A+TD +NL +A++F GI+P+ Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + +D + LL + G++ L E+VSR ++ +G+Q Sbjct: 63 LGSTIRLDDAQH---------------RATLLAMSNVGWKSLTEIVSRGFI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E + +++L G + + ++ Q A L + + FG+R+Y+ L R Sbjct: 106 PCVKKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAAPLLEAWIEKFGNRVYLALTR 163 Query: 189 HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 DR E +Q LA + + +VA N+ F+ +ED+EAH+ + +A V++ Sbjct: 164 T---DRPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDR 220 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR+ +P+ + K EM+ +FSD+P A+ENT IA+RC+ LQ+ LP + + I Sbjct: 221 RPRLYSPEQHFKTSDEMIELFSDIPSAIENTYNIAKRCNVSLQLGTYFLPDYPIPDGFTI 280 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGY 356 + + + GLE RL + ++D Y +R+D+E+ +I +M F GY Sbjct: 281 ----DTYFEHLSKVGLEERLDYLYPVEK-RSEDWPEIRKPYDERIDYEVGIILKMGFPGY 335 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 336 FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ Sbjct: 396 DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530 K++P P AI + + ++ + +PS + E++ KLEG+ R+ HA Sbjct: 456 KMVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAG 514 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + Sbjct: 515 GVVIAPGKITDFSAVLCDEDGTSRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574 Query: 591 QRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + D +S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA V Sbjct: 575 KNRDSNDPLIISHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFV 634 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+D I + +R +G + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L Sbjct: 635 SLYRPGPMDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTL 693 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ++ F++GA++ GI ++ A +IF+ + KFA YGFNKSHAA Sbjct: 694 GGADLLRRAMGKKKPEEMVKQRQIFLAGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAA 753 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA+++Y TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN Sbjct: 754 AYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYH 813 Query: 828 FKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885 F D++ I Y L AIKGVG + ++++ P+ L DFC R+D KK+N+R LE+L Sbjct: 814 FHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEAL 873 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944 + AGALDC G R L+ L + A+ NR + ++F E+ ++ +S Sbjct: 874 IRAGALDCLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWS 933 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 E VR + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 934 DE---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVI 988 >gi|195941713|ref|ZP_03087095.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 80a] Length = 1161 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/973 (41%), Positives = 595/973 (61%), Gaps = 32/973 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ ++V+ + +PL A N+S +++ ED A D+++ + S ++R + Sbjct: 195 HGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDENRLK 254 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQ 304 + T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + + Sbjct: 255 METNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFNTLG 314 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L + + GL+ R + R +EL+VI M F GYFLIV DFI Sbjct: 315 EY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVWDFI 363 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC Sbjct: 364 KFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 423 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ P Sbjct: 424 EGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPDGPK 483 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ VP Sbjct: 484 --VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYVP 541 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602 +Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + IP Sbjct: 542 IYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNIP 599 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 600 DNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQFI 659 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK + Sbjct: 660 AAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKE 719 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K + Sbjct: 720 DEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKAN 779 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L I Sbjct: 780 YPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLNGI 839 Query: 843 KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K +G I+ E + + S EDF RVD K +N++ LES + +G D +R L Sbjct: 840 KNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKTL 899 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 ++LD + + + N+ ++F + + F + S E+ +L Sbjct: 900 FENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKELL 959 Query: 960 GFYFSGHPLDVYK 972 GFY SGHPLD YK Sbjct: 960 GFYVSGHPLDPYK 972 >gi|290968934|ref|ZP_06560469.1| DNA polymerase III, alpha subunit [Megasphaera genomosp. type_1 str. 28L] gi|290780890|gb|EFD93483.1| DNA polymerase III, alpha subunit [Megasphaera genomosp. type_1 str. 28L] Length = 1163 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1045 (36%), Positives = 598/1045 (57%), Gaps = 52/1045 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSL +G + ++ A PAIA+TD N++ A+ ++A A GI+PI Sbjct: 4 FVHLHVHTQYSLFDGLCRIPEMVQMAKAMNMPAIAVTDHGNMYGAVHLYKEAKAQGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSV 129 +GC++ + + + + + ++LL +GY L+++VS+ Y+ Sbjct: 64 LGCEIYMTRGSRFEKKTRER-----LCHLILLAKNTQGYHNLVKIVSKGYVDGVNNYHKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ EG+I L+ G I + + A K L +FG D Y+ +Q Sbjct: 119 RVDYELLEQY-HEGIIALSACIEGHIQQDILNHDEAAAIKTLQRLTGIFGKDDFYLEVQN 177 Query: 189 HRGYDRYRESQVVQLAYTH-----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 H E ++V+ + + LVATN+ +L + D A +V + ++ + ++ Sbjct: 178 HG----IPEEKIVRRVFKEWSQQFGIRLVATNDYHYLKKNDAPAQEVKLCISTGSTLNNP 233 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----EK 298 D + D Y+K+ EM +F D+PEAL T+EIA +C+ L+ +P F E Sbjct: 234 DHFKFFNDSFYMKSYEEMAELFPDMPEALATTLEIAEKCNVELKFDERHVPSFPVPSGET 293 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + ++K E L K E R+R+D+EL++IA+M F YFL Sbjct: 294 DASYLRKLCEQSLPEKYPTVTET---------------VRKRVDYELDIIAQMGFPSYFL 338 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV D++++A+ ++IPVGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R++MPD Sbjct: 339 IVWDYVKFARDHHIPVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVTMPDI 398 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC + R ++I YV KYG + V+QIITFG+L AKA LRDVGR L++P S+V+R+ K+ Sbjct: 399 DMDFCYENRSKIIDYVTRKYGKDHVSQIITFGTLAAKAVLRDVGRVLEIPLSEVNRIVKM 458 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 +PN+ + +A+ RE DP + R + + + LEGL RHASTHAAGIVI P Sbjct: 459 VPNELGMTLD-KALEQSRELRETVAKDPQIQRWMALGKALEGLVRHASTHAAGIVISAAP 517 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 + +P+ L TQ++ + +E+ GL+K DFLGL+TLT++ ++ + + G +D Sbjct: 518 IDDYIPLQYSKEGYL-TTQYDKELVEELGLLKMDFLGLRTLTVIGDTIKLIKENHGTDID 576 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 IP DD T +LT T G+FQ+ES G+ ++ + P ED+I LV+LYRPGP+ + Sbjct: 577 PDHIPLDDEATCRMLTMGDTAGVFQMESDGITALVKELAPKHFEDMIPLVALYRPGPLGS 636 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + R +G+ + +HPL++P+L++T GVI+YQEQVMQIA + G++L +AD+LRR Sbjct: 637 GMVEDFIKRSHGETAVTYLHPLLEPILRDTYGVILYQEQVMQIASSMGGFTLGQADLLRR 696 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK + + Q++ F++G NGI +A +F+L+ FA YGFNKSH+AAYA +++Q Sbjct: 697 AMGKKKESILKAQRDLFLAGTRANGIEDEVAHKVFDLMVYFAGYGFNKSHSAAYAYVAWQ 756 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HY E +AA+MT +++V KI + + R+ I ++ P VNT F V + RI Sbjct: 757 TAYLKAHYRAELMAATMTSMINDVAKISYYISECRRHGIAVLSPDVNTSVSTFSVENGRI 816 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+ +K VG I+ E PF SL DFCSRV+ +NRRV+ESL+ GA+D F Sbjct: 817 RFGLSGVKNVGENVIAVILQERQEGGPFTSLSDFCSRVNYHVVNRRVIESLIRCGAMDSF 876 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---EKGTFS-DKITLEKFSVENSSV 950 G R QL+Q LD +K+R +F E+ F +E+FS+E Sbjct: 877 GKYRSQLIQVLDRAMALGASKQKDRDTGQMGLFDEDDTEEALFDLSYPEIEEFSIEE--- 933 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG--YEESVATIRGNNIRLAAMVVSKQQKK 1008 R E+ GFYFSGHPL+ YK + + Y E G I ++ ++++ Sbjct: 934 RLAMEKEYDGFYFSGHPLNKYKEQMAALTPLSALYGEHARQYDGKEIYCGGLISTQRRVT 993 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 T++ + +T + + A FP Sbjct: 994 TKRKDLMAILTLEDYTQTVTAVVFP 1018 >gi|260550635|ref|ZP_05824844.1| DNA polymerase subunit III alpha [Acinetobacter sp. RUH2624] gi|260406346|gb|EEW99829.1| DNA polymerase subunit III alpha [Acinetobacter sp. RUH2624] Length = 1186 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1017 (38%), Positives = 596/1017 (58%), Gaps = 57/1017 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + +++ D+ PA+A+TD +NL +A++F GI+PI Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVKAAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ + LL + G++ L E+VSR ++ +G+Q Sbjct: 63 LGSTIRLNDAQH---------------RATLLAMSDIGWKGLTEIVSRGFI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E + +++L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 106 PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTR 163 Query: 189 HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 DR E +Q LA + + +VA N+ F+ +ED+EAH+ + +A V++ Sbjct: 164 ---TDRAGEEDFIQEAAKLAAKYNIGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDR 220 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------I 296 RPR+ +P+ + K EM+ +FSD+P A+ENT IA+RC+ L++ LP + I Sbjct: 221 RPRLYSPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVSLKLGTYFLPEYPIPDGFTI 280 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + + + KE E R + +E R + + Y +R+D+E+ +I +M F GY Sbjct: 281 DTYFEHLSKEGLEE-RLNYLYPVEKRGEDWPEIR----KPYDERIDYEVGIILKMGFPGY 335 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 336 FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ Sbjct: 396 DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530 K++P P AI + + ++ + +PS + E++ KLEG+ R+ HA Sbjct: 456 KMVPTKPLGVDLATAIEMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGITRNTGKHAG 514 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + Sbjct: 515 GVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574 Query: 591 Q-RGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + RG +++S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VS Sbjct: 575 KNRGNDPLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVS 634 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + +R +G + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L Sbjct: 635 LYRPGPMDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLG 693 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAA Sbjct: 694 GADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAA 753 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++Y TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN F Sbjct: 754 YALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHF 813 Query: 829 KVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLV 886 D++ I Y L AIKGVG + ++++ + P+ L DFC R+D KK+N+R LE+L+ Sbjct: 814 HASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALI 873 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSV 945 AGALDC G R L+ L + A+ NR + ++F E+ ++ +S Sbjct: 874 RAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWSD 933 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 E VR + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 934 E---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVL 987 >gi|126696251|ref|YP_001091137.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9301] gi|126543294|gb|ABO17536.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9301] Length = 1165 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1055 (37%), Positives = 625/1055 (59%), Gaps = 50/1055 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA ++ I+D+ +IA+TD ++ L+ +K GI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQISKIVDRACDLGMESIALTDHGVMYGVLDLVKKCKEKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P +V+L GY+ L++L + +L Sbjct: 62 IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRG 114 Query: 127 QSV--RICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + + R C+ S L + ++GLI+ T G I +A VAE L +KKLF D Sbjct: 115 RGIFSRPCIDKSLLSKY-SDGLIISTACLGGEIPQAILKGRLDVAEDIALWYKKLFADDF 173 Query: 183 YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q H DR +++++ H++ ++ATN++ +LS D EAHD L+ V ++S Sbjct: 174 YLEIQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLIS 233 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRF 295 + R R T Y+K+ +EM+ +F D + EA+ NTVEI+++ +P+F Sbjct: 234 DEKRLRYTGTEYIKSENEMLELFKDHIDDESIIEAVNNTVEISQKVEVFDLFGNYRMPKF 293 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 E D +L NK GL RL + + + ++Y++RL EL +I M F Sbjct: 294 PLNEDTD-SFSFLTQLSNK---GLLKRLKKNDLTE--VDENYKKRLSSELKIIKDMGFPD 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D+I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP R SM Sbjct: 348 YFLVVWDYIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D DFC DRR+EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+L Sbjct: 408 PDIDTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKL 467 Query: 476 CKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 KLIP P L + D + FR+ + D V + ++++ ++EG + HAAG Sbjct: 468 AKLIPVVRGKPHKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLALRIEGTNKTYGVHAAG 527 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI PL +LVP+ R+ + +TQ++M IE GL+K DFLGLK LT+++K++ + Q Sbjct: 528 VVIASDPLDELVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLINQ 586 Query: 592 R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 G K+++ +P +D +T+ L+ GIFQLESSGM+Q ++ +P+ +EDI ++++LY Sbjct: 587 STGRKINIDELPQNDGKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALY 646 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+D ++ + NRKNG EKI HP I +L ET G+++YQEQ+M+IAQ L+GYSL Sbjct: 647 RPGPLDAGLIPKFINRKNGNEKIDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLG 706 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 +AD+LRRAMGKK EM K + F+ G+ K G+++ +A ++F+ + FA+Y FNKSH+ A Sbjct: 707 DADLLRRAMGKKKVSEMVKHRNIFVDGSRKKGVNEKLANDLFDQMVLFAEYCFNKSHSTA 766 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++YQTA++K H+PV ++AA +++ + +K++++ + I+++ PS+N VDF Sbjct: 767 YGAVTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDF 826 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + +N+I + L+AIK +G + R+I+E ++ F SL D C R+ S LN+R LESL+ Sbjct: 827 TIKNNQILFGLSAIKNLGDSAIRNIIENRNSFGTFKSLSDLCDRLPSNILNKRSLESLIH 886 Query: 888 AGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG----TFSDKITLE 941 GALD F +R QLL L+++ ++A ++R + N+F + FSD L Sbjct: 887 CGALDEFSKDNNRAQLLSDLEHVVEWASSRNRDRLSGQGNLFDSKDEFSNVAFSDS-QLA 945 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLD-VYKP--ILRKMGIKGYEESVATIRGNNIRLA 998 K + + + E+++LGFY S HPL + KP ++ + I EE + + L Sbjct: 946 KVDDYSLIEKLKLEKQLLGFYLSDHPLKHLTKPAKLVSPISISQLEEIKDRTK---VSLV 1002 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ +Q TRKG R+ V + + EA FP Sbjct: 1003 GMIPDLKQITTRKGDRMAIVQLEDLSGSCEAIVFP 1037 >gi|312897946|ref|ZP_07757359.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359] gi|310620980|gb|EFQ04527.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359] Length = 1158 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1036 (37%), Positives = 591/1036 (57%), Gaps = 35/1036 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSL +G + ++ + PA+A+TD N++ + + A GI+PI Sbjct: 4 FVHLHNHTQYSLFDGLTRIPEMVKRAKDLGMPAVAVTDHGNMYGLIHLYKAAKKEGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 +GC++ + + ++ + + ++LL GYQ L+++VS+ ++ G+ S Sbjct: 64 LGCEIYMTRGSRFEQKSKER-----LCHLILLAKDFHGYQNLVKIVSKAFV--DGENSYH 116 Query: 130 --RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R L++ EGLI L+ G + + + A + L F LFG D Y+ + Sbjct: 117 RPRADFDLLEQY-HEGLIALSACIEGQVQQDILNGNEMQARQTLERFISLFGKDDFYLEI 175 Query: 187 QRHRGYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Q H G RE + V + E L LVATN+ +L ++D A +V + ++ + + + Sbjct: 176 QNH-GLAEEREVRRVFKDWAEEYGLKLVATNDFHYLDKDDAPAQEVKLCISTGSTLDDPN 234 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R + + Y+K+R EM +F DLPEAL+ T+EIA +C+ + LP+F + + Sbjct: 235 HFRFSNNEFYMKSREEMEKLFPDLPEALDTTLEIADKCNVEISFDERHLPQFPVPDGE-- 292 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +E+ LR L R + A R+RLD+EL VI M F YFLIV D+ Sbjct: 293 --TDESYLRKLCEEALPTRYSVITDA-------VRERLDYELGVINAMGFPSYFLIVWDY 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 +++A+ + IPVGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R++MPD D+DFC Sbjct: 344 VKYARDHKIPVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERITMPDIDMDFC 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + R +I YV KYG + VAQIITFG+L A+A LRDVGR L MP S+V+R+ K +PN+ Sbjct: 404 YENRSRIIDYVTRKYGKDHVAQIITFGTLAARAVLRDVGRVLDMPLSEVNRIMKTVPNEL 463 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ FR+ V RL++ ++LEGL RH+STHAAG+VI P+ V Sbjct: 464 GITLD-KALQTSKEFRKDYETKAEVRRLVDFGKRLEGLVRHSSTHAAGVVISAAPVDDYV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602 PM L TQ++ +E+ GL+K DFLGL+TLT++ ++ + + G+ +D+ I Sbjct: 523 PMQYSKEGYL-TTQYDKDLVEELGLLKMDFLGLRTLTVIGDAVAMINRNYGIDLDIDKIS 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD T LLT T G+FQ+ES G+ ++ + P E +I LV+LYRPGP+ + +V + Sbjct: 582 LDDEATCRLLTEGDTAGVFQMESQGITNLVKELAPKHFEHMIPLVALYRPGPLGSGMVED 641 Query: 663 NRK--NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 K +G++K+ +HPL++P+LK+T GVI+YQEQVMQIA + G+SL EAD+LRRAMGKK Sbjct: 642 FIKGSHGEKKVTYLHPLLEPILKDTYGVILYQEQVMQIASAMGGFSLGEADLLRRAMGKK 701 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + + Q+ F+ G KN I IA +F+L+ FA YGFNKSH+AAYA +++QTA++K Sbjct: 702 KEGVLKAQRAHFLEGTRKNHIDDDIANKVFDLMVYFAGYGFNKSHSAAYAYVAWQTAYLK 761 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HY EF+AA+MT + +V KI + + ++ ++ ++ P VN F V I + LA Sbjct: 762 AHYCAEFMAATMTSMISDVAKISYYAAECKRHHVPVLSPDVNESESVFSVQGGNIRFGLA 821 Query: 841 AIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK VG R I+EA D PF S EDFCSRVDS+ +NRR LESL+ GA+D FG R Sbjct: 822 GIKSVGENAIRTILEARKKDGPFTSFEDFCSRVDSRIVNRRGLESLIQCGAMDSFGKKRS 881 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 QL+ LD K+ + +F S + S+R E+ Sbjct: 882 QLMAVLDQAMSMGALRRKDNESGQMGLFDDVVSDVSTDLVYPDMEEYPLSMRLAMEKEYD 941 Query: 960 GFYFSGHPLDVYKPILRKMGIKG--YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 GFYFSGHPLD Y ++ K+ Y+E G I + ++ + ++ T++ + Sbjct: 942 GFYFSGHPLDAYTEVMNKLTPLAVLYDEEARGYDGKMITVGGLITAVRRVTTKRNDAMAI 1001 Query: 1018 VTFSEPAKEYEANFFP 1033 +T + FP Sbjct: 1002 ITVEDFTHTVTVVVFP 1017 >gi|210621647|ref|ZP_03292734.1| hypothetical protein CLOHIR_00679 [Clostridium hiranonis DSM 13275] gi|210154667|gb|EEA85673.1| hypothetical protein CLOHIR_00679 [Clostridium hiranonis DSM 13275] Length = 1192 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1068 (37%), Positives = 612/1068 (57%), Gaps = 69/1068 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G + ++ + A+AITD +F A++F + A A GI+P Sbjct: 7 NFTHLHVHTEYSLLDGFSRVKTLVKRAKEKGMTAVAITDHGCMFGAIDFYKAAKAEGIKP 66 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + K+T++ +VLL GY+ LI++VS+ Y+ D Sbjct: 67 IIGCEVYTAPR---KLTDKDPNYDKHQGHLVLLAKDMVGYKNLIKIVSKSYV-DGFYYKP 122 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R + L++ ++GLI L+ +G + RA + A K + ++ +FG+ Y+ +Q Sbjct: 123 RTDMDELKK-HSQGLIALSACLAGDVPRAIMNGNYDKARKLAMEYRDIFGNGNYYLEIQD 181 Query: 189 HRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G ++ ++VV+L+ +PLVATN+ ++ ++D + D+LM + + ++R Sbjct: 182 H-GLPEQKQVNTEVVRLSRELNIPLVATNDVHYVDKDDAKIQDILMCLQMQKTIDDENRM 240 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + D YLK+R EM +F +L EAL+NT EIA RC+ + H LPR+ E Sbjct: 241 KFPSDEFYLKSREEMEQLFPELEEALDNTNEIAERCNVEFEFHKYHLPRYDVPE------ 294 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVAD 362 G L Q + + Y ++Y++RL++ELN I M + YFLIV D Sbjct: 295 -------GYTTNGYFRELCQKGLVERYGEDCPEEYKERLEYELNTIENMGYVEYFLIVWD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI +AK+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DIDF Sbjct: 348 FINFAKQNNIMVGPGRGSAAGSIVAYTLKITDIDPMKYSLLFERFLNPERVSMPDIDIDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR+EVI YV+ KYG + VAQIITFG++ AK A+RDV R L + Y++ D++ K IP + Sbjct: 408 CYERREEVIDYVKRKYGEDHVAQIITFGTMGAKIAIRDVARVLNVSYNKADQIAKEIPFE 467 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ + E +D +++IS++LEG RHASTHAAG+VI P+ + Sbjct: 468 LGMTID-KAMDSNPTLVELYESDAEAREVIDISKRLEGTLRHASTHAAGVVIARNPVDEY 526 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVK-----V 596 VP+Y+ D TQF M +E+ GL+K DFLGL+TLT+++ +LD + R +K + Sbjct: 527 VPLYK--HQDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIELNRDIKGYTEHI 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D S + +DD E + L+ TLG+FQLESSGMR ++ ++P+ EDI+A +SL+RPGP+D Sbjct: 585 DFSKMEYDDDEVFETLSQGNTLGVFQLESSGMRNFMKQLKPNSFEDIVAGISLFRPGPMD 644 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +I Y KN EK+ I+ + P+L+ T G ++YQEQVMQ+ + L+GYS +D++RRA Sbjct: 645 SIPTYIENKNNPEKVTYINDKLRPILEVTYGCLVYQEQVMQVVRDLAGYSYGRSDLVRRA 704 Query: 717 MGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKS 764 M KK + M+++++ FI G +NGIS+ A IF+ + FA Y FNKS Sbjct: 705 MSKKKMDVMEEERQYFIHGKFDDEGNIEIPGCIRNGISEEDANKIFDDMIDFARYAFNKS 764 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 HAAAY V++Y+TA++K HYPVEF+AA MT M N +K+ ++ ++ I + PP +N Sbjct: 765 HAAAYGVLAYETAYLKVHYPVEFMAALMTSIMGNSDKVVEYIRECNAIGIPVNPPDINKS 824 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V + I + LAA+K VG +I+ E + F DF R+D+K N+RV+E Sbjct: 825 FSKFSVEGDSIRFGLAAVKNVGVNIIENIVKEREENGEFKDFVDFAKRLDTKDTNKRVVE 884 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---------AHEKGTF 934 SL+ GA D +R L+ +++ + K ++F A E Sbjct: 885 SLIKCGAFDQISENRATLMAGYESVLESISMDRKKNVQGQISLFDAFSTQVEEAPEMQLS 944 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-RKMGI--------KGYEE 985 ++ + +FS R E+ VLG Y SGHPL YK L RK I K E+ Sbjct: 945 TNLPVVREFS---EKERLNMEKEVLGMYLSGHPLSEYKSELDRKTSINMKKINELKEDEK 1001 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + + + MV++K+ T++ + ++T + E FP Sbjct: 1002 TYMKLHDREVIMGGMVIAKRIMTTKRNEIMAFITLEDLYGTIEVVVFP 1049 >gi|225551916|ref|ZP_03772856.1| DNA polymerase III subunit alpha [Borrelia sp. SV1] gi|225370914|gb|EEH00344.1| DNA polymerase III subunit alpha [Borrelia sp. SV1] Length = 1161 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + D E V Y+ EL PL A N+S +++ ED A D+++ + S ++ Sbjct: 195 HGIKDQDIVNERLV---KYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301 R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIK 596 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++ Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIRQSFNYQAFKEYSYSELLGFEK 956 Query: 957 RVLGFYFSGHPLDVYK 972 +LGFY SGHPLD YK Sbjct: 957 ELLGFYVSGHPLDPYK 972 >gi|295105629|emb|CBL03173.1| DNA polymerase III catalytic subunit, DnaE type [Faecalibacterium prausnitzii SL3/3] Length = 1169 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1046 (36%), Positives = 597/1046 (57%), Gaps = 42/1046 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA ++ +++++ Q AIA TD ++ ++F + A AGI+PI Sbjct: 11 FAHLHIHTEYSLLDGACRIDQLMERVKECGQTAIACTDHGVMYGCVQFYKAAKKAGIKPI 70 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + N+ ++LL GY+ LI++VS ++ +G S Sbjct: 71 IGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAGFV--EGFYSKP 124 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L E EGLI L+ +G I +A + A+ L ++ LFG + Y+ LQ H Sbjct: 125 RVDKQLLEQYHEGLICLSACLAGEIPQAILAGDYERAKATALWYRDLFGAENYYIELQDH 184 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D Q+++L+ +P+ ATN++ +L +ED + +L+ + + DR Sbjct: 185 GLKEDTTVLPQLIKLSRETGIPMAATNDAHYLRKEDAKMQSILLCIQTGKTIQDADRMEF 244 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D Y+K EM +FS +PEA NT +IA +C+F + +P + + D Q Sbjct: 245 QTDEFYVKTTDEMYELFSMVPEACANTAKIAEQCNFDFEFGHTKIPYYKAPDGMDNQAYF 304 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E + GLE R Q RL +E+ V+ M ++ Y+LIV D+I +A Sbjct: 305 EKLCWD----GLERRYGPDV------PQANIDRLKYEIGVVKTMGYTNYYLIVWDYINFA 354 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +RR Sbjct: 355 KSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYERR 414 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + KL+P + + Sbjct: 415 QEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAKLVPMELKMTL 474 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ S ++ DP V L++ + K+EG+ RHASTHAAG+VI P +P+ Sbjct: 475 K-RALEVSSELKKLYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPEPTDYYLPLAT 533 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 + LPVTQFNM IE+ GL+K DFLGL+TLT+++ + + ++ + + + +DD + Sbjct: 534 N--DGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAETAVQKQHPEFSIRKLDYDDPD 591 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L T G+FQLESSGM+Q L G+QP +ED+IAL+SLYRPGP+D+I Y ++ Sbjct: 592 TYKMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDSIPTYLRNRHE 651 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +KI P + +L T G I+YQEQVMQI + L+G+S +AD +RRAM KK M+ Sbjct: 652 PDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAMSKKKHAVMEA 711 Query: 728 QKERFISGASK----------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 ++E F+ G ++ NGI + +A I++ ++ FA Y FNKSHAA YA +++QTA Sbjct: 712 EREHFVHGCTEPGHECPGCVANGIPEQVANQIYDEMSSFASYAFNKSHAACYAYVAFQTA 771 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIY 836 ++K HYP +F+AA +T +DN +K+ ++ + + I+++PP VN F DN +I Sbjct: 772 YLKCHYPSQFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNISNGGFTADDNGQIR 831 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 + L A+K VG + + +KP+ SL DFC R+ +LNRR +ESL+ AGA DCFG Sbjct: 832 FGLNAVKNVGRNLIENAVTERKEKPYTSLYDFCKRMHGSELNRRAVESLIKAGAFDCFGS 891 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-----SDKITLEKFSVENSSVR 951 +R ++++++ I K + + ++F+ G D + + + Sbjct: 892 NRHSMVEAVEGILKSIETDSRRNLEGQLDLFSVMSGEVQQSPQEDVYEIRPLAEYTPAEL 951 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIR-GNNIRLAAMVVSKQQK 1007 + E+ V G Y SGHPLD Y+ ++G IK A ++ G +R+ VV + Sbjct: 952 LQQEKEVSGLYLSGHPLDAYREKSARIGSHTIKDLTGEDAHVQDGEKVRIVCAVVKNRMM 1011 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ S + + + + E FP Sbjct: 1012 TTKSNSMMAFTSVEDLTGTMEVIVFP 1037 >gi|216264846|ref|ZP_03436838.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 156a] gi|215981319|gb|EEC22126.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 156a] Length = 1161 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A +GI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKSGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + D E V Y+ EL PL A N+S +++ ED A D+++ + S ++ Sbjct: 195 HGIKDQDIVNERLV---NYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301 R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 481 GPK--VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIK 596 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++ Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956 Query: 957 RVLGFYFSGHPLDVYK 972 +LGFY SGHPLD YK Sbjct: 957 ELLGFYVSGHPLDPYK 972 >gi|257439793|ref|ZP_05615548.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] gi|257197702|gb|EEU95986.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] Length = 1171 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1045 (37%), Positives = 593/1045 (56%), Gaps = 41/1045 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA ++ ++D++ Q AIA TD ++ ++F + A AGI+PI Sbjct: 14 FVHLHIHTEYSLLDGACRIDQLMDRVKECGQTAIACTDHGVMYGCVQFYKAAKKAGIKPI 73 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + N+ ++LL GY+ L +LVS ++ +G S Sbjct: 74 IGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLAKLVSAAFI--EGFYSKP 127 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 L E EGLI L+ +G I +A + A+ L ++ LFG+ Y+ LQ H Sbjct: 128 RVDKQLLEQYHEGLICLSACLAGEIPQAILSGDYERAKASALWYRDLFGEGNYYIELQDH 187 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D Q+++LA +P+ ATN+S +L +ED + +L+ + + DR Sbjct: 188 GLEEDNIVLPQLIKLARETGIPMAATNDSHYLRKEDAKMQAILLCIQTGKTMQDADRMEF 247 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D Y+K EM +F+ +P+A NT IA +C+F + +P + D Q Sbjct: 248 QTDEFYVKTTDEMYDLFAMVPDACANTRIIADQCNFDFEFGNTKIPYYKAPGGMDNQAFF 307 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E GLE R Q + RL++E++VI M ++ Y+LIV D++ +A Sbjct: 308 EK----LCWEGLERRYGSNV------PQANKDRLNYEISVIKTMGYTNYYLIVWDYVNYA 357 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K IPVGPGRGSGAGS+ AY++ ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +RR Sbjct: 358 KSQGIPVGPGRGSGAGSIAAYSVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYERR 417 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG + VAQI+TFG++ A+ A+RDVGR + MPY +VD + K +P + + Sbjct: 418 QEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGMPYQEVDVVAKQVPAELKMTI 477 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 A+ R DP V LL+ + K+EG+ RHASTHAAG+VI P +P+ Sbjct: 478 K-HALEVSPELRRMYETDPKVTELLDTAMKVEGMPRHASTHAAGVVITPEPTDYYLPLAT 536 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 + LPVTQFNM IE+ GL+K DFLGL+TLT+++ + + ++ ++ + +DD E Sbjct: 537 N--DGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAELAIQKKEPDFSIAKLDYDDPE 594 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L+ T G+FQLESSGM+Q L G+QP +ED+IAL+SLYRPGP+D+I Y ++ Sbjct: 595 TYKMLSRGETEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDSIPTYLRNRHE 654 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +KI P + +L T G I+YQEQVMQI + L+G+S +AD +RRAM KK M+ Sbjct: 655 PDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAMSKKKHAVMEA 714 Query: 728 QKERFISGAS----------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 ++E F+ G + NGIS+ IA I++ ++ FA Y FNKSHAA YA +++QTA Sbjct: 715 EREHFVHGCTDPGNECPGCVANGISEKIANEIYDEMSSFASYAFNKSHAACYAYVAFQTA 774 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIY 836 ++K HYP EF+AA +T +DN K+ ++ + + I+++PP +N F D+ RI Sbjct: 775 YLKCHYPSEFMAALLTSVLDNTGKVIEYSGECARLGIKVLPPDINISGSGFTAEDSGRIR 834 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 + L A+K VGT +E +KP+ SL DFC R+ +LNRR +ESL+ AGA D G Sbjct: 835 FGLNAVKNVGTRLIERSVEERQEKPYTSLYDFCKRMHGTELNRRTVESLIKAGAFDNLGS 894 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT----FSDKITLEKFSVENSSVRF 952 +R L+++ + + K + + + ++F+ GT +D ++ + Sbjct: 895 NRRSLVEATEGVLKSIESDSRKNLDGQIDLFSMMSGTDNTSAADSYEIKPCPEYTHAELL 954 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRGN-NIRLAAMVVSKQQKK 1008 + E+ V G Y SGHPLD Y+ + IK A + N ++R+ +V + Sbjct: 955 QQEKEVSGLYLSGHPLDAYREQSAQFATHTIKALTGEDANVPDNSHVRIVCTIVKSKMVT 1014 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ S + + + + E FP Sbjct: 1015 TKTNSMMAYTSVEDLTGTMEVIVFP 1039 >gi|262278808|ref|ZP_06056593.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202] gi|262259159|gb|EEY77892.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202] Length = 1187 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1018 (38%), Positives = 593/1018 (58%), Gaps = 58/1018 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + ++++ DQ PA+A+TD +NL +A++F GI+P+ Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + +D + + LL + G++ L E+VSR ++ +G+Q Sbjct: 63 LGSIIRLDDAQH---------------RVTLLAMSDIGWKSLTEIVSRGFI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E + +++L G + + ++ Q A L + + FG+R+Y+ L R Sbjct: 106 PCVQKEWVLEQHQDIIVLL--GQHSDVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTR 163 Query: 189 HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 DR E +Q LA + + +VA N+ F+ +ED+EAH+ + +A V++ Sbjct: 164 T---DRPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNR 220 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR +P+ + K EM+ +FSD+P A+ENT IA+RC+ LQ+ LP + + I Sbjct: 221 RPRTYSPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTI 280 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGY 356 + + + GLE RL + +D Y +R+D+E+ +I +M F GY Sbjct: 281 ----DTYFEHLSKVGLEERLNYLYPVEK-RGEDWLEIRKPYDERIDYEVGIILKMGFPGY 335 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 336 FLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMP 395 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFC RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ Sbjct: 396 DFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRIS 455 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPS------VDRLLEISQKLEGLYRHASTHAA 530 K++P P AI + + ++ + +PS + E++ KLEG+ R+ HA Sbjct: 456 KMVPTKPLGVDLATAIDMEPQLKDI-VTNPSNPDNDDASEIWEMALKLEGVTRNTGKHAG 514 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + Sbjct: 515 GVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNIN 574 Query: 591 QR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + ++++ +P DD + Y + T +FQ ES GM++ L+ +P E+IIA V Sbjct: 575 KNRDSNDQLNILNVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFV 634 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+D I + +R +G + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L Sbjct: 635 SLYRPGPMDLIPDFIHRMHGGD-FEYLHPLLEGVLEPTYGIMVYQEQVMQAAQICAGYTL 693 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ++ F+ GA++ GI ++ A +IF+ + KFA YGFNKSHAA Sbjct: 694 GGADLLRRAMGKKKPEEMVKQRQIFLEGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAA 753 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA+++Y TAW+K HYP EF+AA MT EM N + + D R NI ++PPSVN Sbjct: 754 AYALVAYHTAWLKAHYPAEFMAAVMTSEMQNTDSVVFLIDDCRNNNIDVLPPSVNMSTYH 813 Query: 828 FKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885 F +++ I Y L AIKGVG + ++++ P+ L DFC R+D KK+N+R LE+L Sbjct: 814 FHASNDKTIVYGLGAIKGVGEQAMQSVIDSRRQYGPYTDLFDFCHRIDLKKINKRTLEAL 873 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFS 944 + AGALDC G R L+ L + A+ NR + ++F E+ ++ +S Sbjct: 874 IRAGALDCLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEVQRKPAKPVKPWS 933 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 E VR + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 934 DE---VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVI 988 >gi|224532747|ref|ZP_03673364.1| DNA polymerase III subunit alpha [Borrelia burgdorferi WI91-23] gi|224512365|gb|EEF82749.1| DNA polymerase III subunit alpha [Borrelia burgdorferi WI91-23] Length = 1161 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/976 (41%), Positives = 595/976 (60%), Gaps = 38/976 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A +GI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKSGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 H--RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + D E V Y+ EL PL A N+S +++ ED A D+++ + S ++ Sbjct: 195 HGIKDQDIVNERLV---NYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDEN 251 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECD 301 R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + Sbjct: 252 RLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFN 311 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 312 TLGEY----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVW 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 481 GPK--VSLKEVLDDNFLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RNVNPDFKIK 596 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 597 NIPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIP 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGK Sbjct: 657 QFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGK 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++ Sbjct: 717 KKEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYL 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 777 KANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGL 836 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IK +G I+ E + + S EDF RVD K +N++ LES + +G D +R Sbjct: 837 NGIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNR 896 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQ 956 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 897 KTLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEK 956 Query: 957 RVLGFYFSGHPLDVYK 972 +LGFY SGHPLD YK Sbjct: 957 ELLGFYVSGHPLDPYK 972 >gi|34496366|ref|NP_900581.1| DNA-directed DNA polymerase III subunit alpha [Chromobacterium violaceum ATCC 12472] gi|34102219|gb|AAQ58585.1| DNA-directed DNA polymerase III, alpha subunit [Chromobacterium violaceum ATCC 12472] Length = 1144 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1042 (37%), Positives = 593/1042 (56%), Gaps = 43/1042 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL++HS +S+ +G + L++ + + A +Q PA+ ++D NLF ++F + GI Sbjct: 3 APRFVHLRLHSEFSITDGIVRLDDAVKRAAKEQMPALGVSDLMNLFGMVKFYKSCRNKGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+ + ++ +++ P+ ++L EGY+RL EL++ + +Q + Sbjct: 63 KPIVSADIWLENEEDRD------KPY----RLMLTAKNREGYRRLCELLTEAFSHNQYRG 112 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I +WL L+ L+G G + A A +R ++ LF Y+ +Q Sbjct: 113 RAEIKRAWLASGDNSNLLCLSGAHLGDVGIALSMGQRDEARRRAEYWESLFPGAFYLEIQ 172 Query: 188 RHRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 R D + VVQ LA LP+VAT+ F+ +ED++AH+ + +A + K Sbjct: 173 R---VDSAQVENVVQATLWLAGETGLPVVATHPIQFMEKEDFKAHEARVCIAEGYTLGDK 229 Query: 244 DRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + Y + +MV F+D+PEAL NTVEIA+RC+ + + LP F + Sbjct: 230 RRPRSFSECQYFLSAEQMVERFADIPEALANTVEIAKRCNISVVLGKNYLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L ++A GLE RL Q + DY RL FE + I +M F GYFLI Sbjct: 290 L----DDFLVHEAKRGLEERLKQLYPDEAERQEKRPDYDARLKFECDTIIQMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFIQW K N PVGPGRGSGAGS+ AY+L+ITD+DPL+++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFIQWGKANGCPVGPGRGSGAGSLVAYSLSITDLDPLKYALLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFCQ+ R VI Y + KYG E V+QI TFG++ +K+ +RDVGR L +P+ DRL KLI Sbjct: 406 VDFCQENRWRVIEYTRRKYGEEAVSQIATFGTMSSKSVIRDVGRVLDLPFGLCDRLSKLI 465 Query: 480 PNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P + P+SL+ A+ + + E + L+E++ LE L R HA G++I Sbjct: 466 PLEANKPLSLEKAMQVEPQIGEI-IESEGAQELIELAMTLEDLTRGIGMHAGGVLIAPGR 524 Query: 539 LSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596 L+ P+Y PV+QF+ +E+ GL+KFDFLGL+ LT+++ + ++ G V Sbjct: 525 LTDFCPLYIASGDGASPVSQFDKDDVEQIGLVKFDFLGLRNLTIIELAQKYIKDLTGEDV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ +P DD Y + T T +FQ ES+GM++ L +P E+IIA V+LYRPGP+D Sbjct: 585 DVAHLPLDDKPAYKVFATANTTAVFQFESTGMKKMLVEAKPSKFEEIIAFVALYRPGPMD 644 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + R +G K +HPL++P+L T G+++YQEQVMQ AQ++ GYSL AD+LRRA Sbjct: 645 LIPDFIQRMHGA-KFEYLHPLLEPVLAPTYGIMVYQEQVMQSAQVIGGYSLGGADLLRRA 703 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM Q+ F+ GA+K I + A IF+ + KFA YGFNKSHAAAYA+++Y T Sbjct: 704 MGKKKVEEMVAQRAMFVQGAAKQDIPEAKANEIFDYMEKFAGYGFNKSHAAAYALVAYHT 763 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKF---CQDARQFNIQIMPPSVNTPCVDF-KVGD 832 AW+K H+ ++AA+M+ E+DN +++K F CQD + + +PP VN F V Sbjct: 764 AWLKAHHCAAYMAATMSTELDNTDQLKVFYDDCQDPKN-GVTFLPPDVNHGFYRFVPVSR 822 Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y+L AIKG G + HI+E A PF L DFC R D K +N+RV+E+L+ AGA Sbjct: 823 KEIRYALGAIKGTGESAVNHIVEVREAGGPFTDLFDFCKRTDKKLVNKRVIEALIRAGAF 882 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDKITLEKFSVENSSV 950 D +R L N+ + E+ N ++ +F + + + + +V Sbjct: 883 DAIEPNRALLFA---NVGLAMEAAEQAHANANQGGLFDMFGDDVAPAVEMAATRPWSDAV 939 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + E+ +GFY S HP Y+ +R G S T R LA V + K Sbjct: 940 KLAEEKLAIGFYLSDHPFSAYEKEVR--GFIKTTLSRLTPRKEPQLLAGFVTGIRVKVGN 997 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 +G ++ +V + + E + F Sbjct: 998 RG-KMAFVQLDDGTAKLEVSLF 1018 >gi|187250629|ref|YP_001875111.1| DNA polymerase III subunit alpha [Elusimicrobium minutum Pei191] gi|186970789|gb|ACC97774.1| DNA polymerase III, alpha subunit [Elusimicrobium minutum Pei191] Length = 1167 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1055 (37%), Positives = 622/1055 (58%), Gaps = 76/1055 (7%) Query: 11 FVHLQVHSSYSLLEGALSLN-----NILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 FVHL HS YSLL+G L L+ L ++AAD A+AITD N++ A++F + A AA Sbjct: 3 FVHLHNHSEYSLLDGMLRLSEKGPSKFLKQVAADGFKAMAITDHGNMYGAMDFYKNAAAA 62 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC+ I N N+ K T + LL EGYQ L+ L+S+ +L D Sbjct: 63 GIKPIIGCEAYIT---NGSHKNKEKGLDKTF-HLTLLAKDYEGYQNLMALISKAWL-DGF 117 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184 RI L + +G++ L+G G + + + A + T++ + G Y+ Sbjct: 118 YYHPRIDKDILAQ-HAKGIMALSGCLKGEVSQELLNGTFAQACEYAKTYESILGKGNYYI 176 Query: 185 NLQRHRGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 L H E Q++ +++ + +P+VATN+ + +ED++AHD+ M ++ Sbjct: 177 ELMDHG----IEEEQIILPKLIEVSKSTGIPVVATNDCHYEKQEDWQAHDIHMCISMGKT 232 Query: 240 VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + +R + T + Y K+ EM +FS +PEA+ NT+E+A +C+ ++ +LP F Sbjct: 233 LDDPNRLKSSTHELYFKSAQEMAELFSYIPEAVSNTLEVAEKCNVVMPKSGFVLPVF--- 289 Query: 299 ECDDIQ---KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 DI + ++ ++N GL +++ G +Y++RLD+EL VI +M FS Sbjct: 290 ---DIPPSFSDTDSYIKNLCQEGLAKKMS------GIIPPNYQERLDYELGVIGKMGFSS 340 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI +A++N+IPVGPGRGSGAGS+ AY+L IT +DP++ LLFERFLNPDR+SM Sbjct: 341 YFLIVADFIDYARQNHIPVGPGRGSGAGSIVAYSLNITKVDPIKNGLLFERFLNPDRLSM 400 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD DIDF + R++VI YV+NKYG VAQIITFG+++AK A++DV R L +P S+ +R+ Sbjct: 401 PDLDIDFSDEGREQVINYVRNKYGETNVAQIITFGTMKAKMAVKDVARVLNIPVSESNRI 460 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIPND + AI ++ ++P +L + ++KLEGL RHA HAAGIV+ Sbjct: 461 TKLIPNDLGTTID-SAIETVKELKQEIASNPQTAKLFDFAKKLEGLKRHAGIHAAGIVVT 519 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWI-EKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593 +S+ P+ R + + TQ+ + + GL+K DFLGL+TLT++ ++D + RG Sbjct: 520 REEVSKYAPLARGSKEAI-TTQYEGGILADDLGLLKIDFLGLRTLTIIDNAVDIIKNMRG 578 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + +D+ IP D+ +TY LL++ TLGIFQLES GMR ++ ++P DI ALV+LYRPG Sbjct: 579 IDIDIDNIPLDNKKTYELLSSAKTLGIFQLESGGMRDLVKRLKPSEFSDISALVALYRPG 638 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+++ ++ + RK G+EKI PL++P+LKET G ++YQEQ+M++++LL G++ +AD Sbjct: 639 PMESGMLESFVRRKAGQEKITYDTPLMEPVLKETYGTMVYQEQIMELSKLLGGFTPGQAD 698 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 LR+AMGKK +EM+K + F++G + I+ A IFE ++KFA YGFNKSH+ AYA+ Sbjct: 699 SLRKAMGKKKVDEMEKARVNFVNGCAGKKINPKTADKIFEQMSKFAGYGFNKSHSVAYAL 758 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEM--------DNVEKIKKFCQDARQFNIQIMPPSVNT 823 +SYQTA++K +YP+EF+ + +T E+ D KI + ++A++ + + P VN Sbjct: 759 VSYQTAYLKANYPIEFMCSLLTNEIGHNAIGSDDKENKIVTYIEEAKKMGFETLGPDVNH 818 Query: 824 PCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879 +F + G I + L A+K VGT A I+ A D+P+ +D R+D K N+ Sbjct: 819 SKENFSIEEVNGKEIIRFGLEAVKNVGTEAAASIVSARGDRPYCGFQDLLERIDLKASNK 878 Query: 880 RVLESLVFAGALDCF------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + +ESL+ AGALD +R +L ++++ + +++ + + ++F + Sbjct: 879 KTIESLIKAGALDSLIPGKTPNSARAVMLAEMEDMLEITAKIKEEKESSICSLFGEDSSA 938 Query: 934 FSDKITLEKFSVENSSVRFENEQ------RVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 F ++++K + + + EQ VLGFY SGHPL YK + K+ EE Sbjct: 939 F---VSVKKKETKTAPRPLKQEQLLEMEKEVLGFYNSGHPLAKYKKHMDKIKSVTIEE-- 993 Query: 988 ATIRGNNIRLAAMVVS--KQQKKTRKGSRIGWVTF 1020 I NNI+ A ++ + KK + + W F Sbjct: 994 --INENNIKGAVNILGIITRVKKRQNKRKEDWAQF 1026 >gi|78779238|ref|YP_397350.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9312] gi|78712737|gb|ABB49914.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9312] Length = 1165 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1056 (37%), Positives = 622/1056 (58%), Gaps = 54/1056 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+ L HS YSLL+GA ++ I+D+ +IA+TD ++ L+ +K GI+PI Sbjct: 3 FIPLHNHSDYSLLDGASQISKIVDRACELGMDSIALTDHGVMYGVLDLVKKCKEKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG ++ + + P P +V+L GY+ L++L + +L + Sbjct: 63 IGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNRTGYKNLVKLTTISHLNGMRGR 115 Query: 128 SV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + R C+ +L +EGLI+ T G I +A VAE L +K LF D Y+ Sbjct: 116 GIFSRPCIDKFLLSKYSEGLIISTACLGGEIPQAILKGRLDVAEDIALWYKNLFADDFYL 175 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H DR +++++ H++ ++ATN++ +LS D EAHD L+ V ++S + Sbjct: 176 EIQDHGSIEDRIVNIELLRIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDE 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297 R R T Y+K+ +EM+ +F D + EA+ NTVEI+++ +P+F Sbjct: 236 KRLRYTGTEYIKSENEMLELFKDHIDDESIKEAVNNTVEISQKIEVFDLFGKYRMPKFPL 295 Query: 298 KECDD---IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 E D + + NE GL RL + + + ++Y++RL EL +I M F Sbjct: 296 NEDTDSFSLLTQLSNE-------GLLKRLKKNTLTE--VDENYKKRLSSELKIIKDMGFP 346 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFL+V D+I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP R S Sbjct: 347 DYFLVVWDYIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKS 406 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD D DFC DRR+EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+ Sbjct: 407 MPDIDTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADK 466 Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 L KLIP P L + D + FR+ + D V + ++++ ++EG + HAA Sbjct: 467 LAKLIPVVRGKPHKLNEMIDKNSPSQEFRDKYINDNRVKKWIDLALRIEGTNKTYGVHAA 526 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI PL +LVP+ R+ + +TQ++M IE GL+K DFLGLK LT+++K++ + Sbjct: 527 GVVIASDPLDELVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLIN 585 Query: 591 QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 Q G +++ +P +D +T+ L+ GIFQLESSGM+Q ++ +P+ +EDI ++++L Sbjct: 586 QSTGKTINIDNLPQNDDKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILAL 645 Query: 650 YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 YRPGP+D ++ + NRKNG EK+ HP I +L ET G+++YQEQ+M+IAQ L+GYSL Sbjct: 646 YRPGPLDAGLIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSL 705 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 +AD+LRRAMGKK EM K + F+ G+ K G+++ +A ++F+ + FA+Y FNKSH+ Sbjct: 706 GDADLLRRAMGKKKVSEMVKHRNIFVDGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHST 765 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY ++YQTA++K H+PV ++AA +++ + +K++++ + I+++ PS+N +D Sbjct: 766 AYGAVTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGID 825 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLV 886 F + +N+I + L+AIK +G + R+I+E + F SL D C R+ S LN+R +ESL+ Sbjct: 826 FTIKNNQILFGLSAIKNLGDSAIRNIIENRNNSGSFKSLSDLCDRLPSNVLNKRSIESLI 885 Query: 887 FAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG----TFSDKITL 940 GALD F +R QLL L+++ ++A ++R + N+F ++ FSD L Sbjct: 886 LCGALDEFSNNNNRAQLLSDLEHVIEWASSRNRDRLSGQGNLFDSKEEFSNVAFSDS-QL 944 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLD-VYKP--ILRKMGIKGYEESVATIRGNNIRL 997 K + + + E+++LGFY S HPL + KP ++ + + EE+ + + L Sbjct: 945 AKVDDYSLIDKLKLEKQLLGFYLSDHPLKHLTKPAKLVSPISVSQLEETKDRTK---VSL 1001 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ +Q TRKG R+ V + + EA FP Sbjct: 1002 VGMIPELKQITTRKGDRMAIVQLEDLSGSCEAIVFP 1037 >gi|239946850|ref|ZP_04698603.1| DNA polymerase III, alpha subunit family [Rickettsia endosymbiont of Ixodes scapularis] gi|239921126|gb|EER21150.1| DNA polymerase III, alpha subunit family [Rickettsia endosymbiont of Ixodes scapularis] Length = 1245 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/862 (42%), Positives = 530/862 (61%), Gaps = 54/862 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ AI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMSAICLADKGNLFGSLEFALYAVKKGLQ 62 Query: 69 PIIGCQLDIDM----------QDNLKMTNQGKTPF--------------------PTVPS 98 PI G L+I QD K +T Sbjct: 63 PIHGVILNIKYNIQHHSASFRQDEFKSKPAERTKVREQRLDSKNSLVSSLLNDAGDIFAQ 122 Query: 99 IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158 I+L+ GY+ L++L S + + K I L E EGLI L + G + + Sbjct: 123 ILLIAKDETGYKNLLKLSSLTFTKNDRKICDHIDFEDLIEY-QEGLIALCCYTDGIVGKC 181 Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNS 217 + + A +++ GDR Y + RH +++ E +++A +PLVATN Sbjct: 182 LLARNEEQAMLFARKLQEILGDRFYFEIMRHDLPEEQFIEDSYIRIAAELAIPLVATNKV 241 Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 LF + ++AHDVL+ ++ DR V+ + Y ++ EM+ +FSDLP A++NTV + Sbjct: 242 LFSEKSMHDAHDVLLCISAGVTKEYPDRKTVSENCYFRSPHEMIELFSDLPSAIQNTVNL 301 Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-- 335 RC F + P+LP F K+ E + +R A GL RLA ++ + Sbjct: 302 RERCYFAAHANPPMLPNFATKDIS-----ETDLIRKDAKEGLLARLATKFKSENISLENQ 356 Query: 336 -----DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390 +Y RL++EL++I M F+GYFLIV+DFI+W+KK I VGPGRGSGAGSV A++L Sbjct: 357 EELKTEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKEGILVGPGRGSGAGSVVAWSL 416 Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450 ITD+DP++F LLFERFLNP+R+SMPDFDIDFCQ+RR+EVI YV++KYG RV QIITFG Sbjct: 417 LITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRSKYGDNRVGQIITFG 476 Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLAD---- 505 +QAKA ++DV R L +PY D L +L+P +PVSL QAI + A + Sbjct: 477 KMQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLEQAIREVPELANAAKGNGLYN 536 Query: 506 -----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560 + +L+ S LEGL+RH+STHAAGIVI L +VP+Y+D SD+ V ++M Sbjct: 537 LEGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVVGYSM 596 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620 K+ E AGLIKFDFLGL+TLT++ L ++G++VD + + FDD++TY +L +G+ Sbjct: 597 KYSEIAGLIKFDFLGLQTLTVITDCKKLLKEQGIEVDFNNMTFDDNKTYQMLCKGKGVGV 656 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ ES GM+ AL ++PD I D+IAL +LYRPGP++NI Y K+ ++ +H L+ P Sbjct: 657 FQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKHKLQQPDYLHELLKP 716 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +L+ET GV+IYQEQV +IAQ+L+GY+L AD+LRRAMGKKIK+EM++Q+E F+ GA N Sbjct: 717 ILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANN 776 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 IS++ A +IF +AKFA YGFNK+HAAAY VISYQTA++K +YP EFL A + LE++N + Sbjct: 777 ISESQAKSIFATVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPAEFLVACLNLELNNHD 836 Query: 801 KIKKFCQDARQFNIQIMPPSVN 822 KI F Q+A+ I+I+ P++N Sbjct: 837 KINLFLQEAKDNGIKIIAPNIN 858 Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 13/207 (6%) Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 +N I ++L AIKGV + + E A F S+ DF R+ K +N ++LE+L+ +G Sbjct: 926 ENAIIFALGAIKGVTPNFGKLVTDERKARGMFKSITDFIERLPPKSINSKLLENLIKSGC 985 Query: 891 LDCFGYSRMQLLQSLDNIQKYA-QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 D +R+QL S+ + Y+ + E+ +N+ I + T S I + + ++ Sbjct: 986 FDELHDNRLQLFSSISKLLSYSTSYHEEQGSNQFSLI---KVSTLSPTILVSSDYADKNT 1042 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQK 1007 + F E +G + S HPL Y+ I ++ I + + N + LA ++ Q+K Sbjct: 1043 LAF-YEFEAMGLFISNHPLMQYQEIFSRLNILNTADLQNNLPEGTNRVNLAGVI---QKK 1098 Query: 1008 KTRKGSRIGWVT--FSEPAKEYEANFF 1032 +R +R +VT S+P +E + F Sbjct: 1099 DSRMSARGRFVTLVLSDPENIFELSIF 1125 >gi|225548617|ref|ZP_03769664.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 94a] gi|225370647|gb|EEH00083.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 94a] Length = 1161 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/971 (40%), Positives = 593/971 (61%), Gaps = 28/971 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ M K + ++LL GY+ L++L S YL + R Sbjct: 81 IG--IEAYMAKTSKFLKKQDDLEKMSYHLILLAKNELGYKNLLKLTSISYL-EGFYYRPR 137 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQRH Sbjct: 138 IDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQRHG 196 Query: 191 GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 D+ ++V+ + +PL A N+S +++ ED A D+++ + S ++R ++ Sbjct: 197 IKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDENRLKME 256 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQKE 306 T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + + + Sbjct: 257 TNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEFNTLGEY 316 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L + + GL+ R + R +EL+VI M F GYFLIV DFI++ Sbjct: 317 ----LEHLTLEGLKFRYKN-------LTSKIKDRAFYELSVIIGMGFEGYFLIVWDFIKF 365 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC + Sbjct: 366 AHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCFEG 425 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ P Sbjct: 426 RDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPDGPK-- 483 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ VP+Y Sbjct: 484 VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYVPLY 543 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFD 604 +D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + IP + Sbjct: 544 KDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNIPDN 601 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 602 DVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQFIAA 661 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK ++E Sbjct: 662 KKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKEDE 721 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K +YP Sbjct: 722 MNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKANYP 781 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L IK Sbjct: 782 EYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLNGIKN 841 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 +G I+ E + + S EDF RVD K +N++ LES + +G D +R L + Sbjct: 842 LGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKTLFE 901 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +LD + + + N+ ++F + + F + S E+ +LGF Sbjct: 902 NLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQAFKEYSYSELLGFEKELLGF 961 Query: 962 YFSGHPLDVYK 972 Y SGHPLD YK Sbjct: 962 YVSGHPLDPYK 972 >gi|289523190|ref|ZP_06440044.1| DNA polymerase III, alpha subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503733|gb|EFD24897.1| DNA polymerase III, alpha subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 1144 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1044 (38%), Positives = 627/1044 (60%), Gaps = 52/1044 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA+ + +++ + A+A+TD +F A+EF + G++PI Sbjct: 10 FVHLHVHTEYSLLDGAIKIKDLVSRAKEWDMGAVAVTDHGVMFGAIEFYYECMKQGVKPI 69 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ +D + + + QG ++LL EGY+ L++LVS + ++ R Sbjct: 70 MGCEVYVDPKGHTRREGQGGNY-----HLLLLAENEEGYRNLVKLVS-IANVEGFYYKPR 123 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + L + ++GLI + +G + A+++ L ++ +FG+ Y+ + + Sbjct: 124 VDYDLLSKY-SKGLIASSACLAGEVPSLILSGRYDEAKEKALLYRDIFGEGNFYLEIMSN 182 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ V++LA +PL+ATN++ +L D + H++L+ V ++ V+ K+R + Sbjct: 183 GLSEQAVANKHVIELARKANIPLLATNDAHYLESYDADWHEILLCVQTNSTVNSKNRFQF 242 Query: 249 -TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + YL++ EM IF D L +AL NTV+I+ RC+ L+ +LP + E + + Sbjct: 243 GSKEFYLRSPVEMWKIFGDELSDALHNTVDISERCNVKLEFGQYMLPEYKVPEGETL--- 299 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ L KA GL R I Q+Y +R+++EL VI +M F+GYFLIV DFI Sbjct: 300 -ESYLALKAQEGLARRFGGREIP-----QEYIKRMEYELGVIKQMGFAGYFLIVQDFINA 353 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+ IPVGPGRGS AGS+ AYAL IT+IDP+ ++LLFERFLNP+R+SMPD D D R Sbjct: 354 AKERGIPVGPGRGSAAGSLVAYALRITEIDPITYNLLFERFLNPERISMPDIDTDISDKR 413 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH- 485 RDEVI YV KYG ++VAQIITF ++++AA+RDVGRAL MPY VD++ KLIP + + Sbjct: 414 RDEVIDYVVEKYGRDKVAQIITFDRMKSRAAVRDVGRALDMPYPDVDKVAKLIPFNVSSI 473 Query: 486 ------PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 L+A+ D +R V +LL+ + +EG+ RH S HAAG+VI PL Sbjct: 474 EEALELSHELKALYDGNR---------EVKQLLDYASHIEGIARHCSQHAAGVVISPEPL 524 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DL 598 +VP+ + + VTQ+ M+ +EK GL+K DFLGL+TL++++++L +A+ G KV DL Sbjct: 525 VNIVPL-KAINGTQIVTQYPMEPLEKLGLVKMDFLGLRTLSMIEETLKNIAKNGKKVPDL 583 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD T+ +L T+G+FQLESSGMRQ L+ + PD +DIIA+++LYRPGP+ + Sbjct: 584 TQLPMDDRATFEMLQRGDTMGVFQLESSGMRQLLKKLCPDSFQDIIAVLALYRPGPLGSG 643 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +V Y RK+G+ I HP ++ LKET G+I+YQEQVMQIA L+GY+L +AD+LRRA Sbjct: 644 MVDQYIERKHGRSPISYPHPALEEALKETYGIILYQEQVMQIAARLAGYTLGQADILRRA 703 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM++Q++ F+ G +N +S A IF+L+ FA YGFNKSH+AAYA+ISYQT Sbjct: 704 MGKKKVEEMEEQRQVFVKGCLENAVSAEQANEIFDLIQYFAGYGFNKSHSAAYAMISYQT 763 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 A++K HYPVEFLAA ++ + ++I ++ ++ R I+++PP VN F + + Sbjct: 764 AYLKAHYPVEFLAAFLSSHIGAKKEILARYVREVRSDGIEVLPPDVNESEAGFTAVGDVV 823 Query: 836 YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L A+ G+ I++A + P+ SL DF SR+D + +N+ V+ESL+ GA D Sbjct: 824 RFGLTAVAKAGSGAVEAILKARKEGGPYKSLWDFVSRIDLRAVNKSVIESLIGVGAFDGL 883 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF-- 952 +R Q+L+SL + + +++++ + +F+ + +D + +E V+ F Sbjct: 884 HSNRRQILESLPVLLEARARLDEDKF--QQRLFSLDG---NDSLDVEPALVDIEDFEFHE 938 Query: 953 --ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKT 1009 E E+ +G Y SGHP + Y+ +RK E + L +V+ +K T Sbjct: 939 KLELEKDAVGLYISGHPFEAYEERVRKYAYCTPSELIHWCSPQAKPLVGGIVTDVAEKYT 998 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 +KG +G V + + E FP Sbjct: 999 KKGDLMGIVGVEDLDAKLEVVCFP 1022 >gi|294787965|ref|ZP_06753209.1| DNA polymerase III, alpha subunit [Simonsiella muelleri ATCC 29453] gi|294484258|gb|EFG31941.1| DNA polymerase III, alpha subunit [Simonsiella muelleri ATCC 29453] Length = 1151 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1028 (38%), Positives = 590/1028 (57%), Gaps = 61/1028 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 ++ L++HS +S+++G + L + A PA+ +TD N F L+F + AGI+PI Sbjct: 6 YIPLRIHSEFSIIDGTIRLKELAQTAAKFGLPALGLTDLMNTFGLLKFYKICRNAGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G D+ + + K N P+ +LL+ +GY RL EL+++ + Q Sbjct: 66 MGA--DVRIHNPHKPDN----PY----RALLLIRNEKGYTRLSELLTQAHTHQHNHQPPE 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + WL E GLI L+G G + A+ + F + Y+ LQR Sbjct: 116 LLEDWLAEGDNSGLICLSGAHMGEVGSQLMLGHDDAAQIAAQKYATWFPNAFYLELQRLP 175 Query: 191 GYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 + S +++A +LP+VAT+ + FL D+ AHD + +A+ ++ RPR Sbjct: 176 EKPEWETYVSGSLKIAAKLDLPVVATHAAQFLQPNDFLAHDTRVCIANGWTLTDPKRPRE 235 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 Y EM+S F+D+PEAL+N+VEIA+RC+ L + LP+F + ++ Sbjct: 236 FVASQYFIQPDEMLSRFADIPEALQNSVEIAKRCNLTLTLGKNFLPQFPTPDGMNL---- 291 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++ + + + GL+ RL + AQ +Y+ RLDFELN I +M F GYFLIV DFI Sbjct: 292 DDYIIHLSNLGLQERLDTLYPNETERAQRLPEYQARLDFELNTIIQMGFPGYFLIVQDFI 351 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK+N PVGPGRGSGAGS+ AY+L ITD+DPL++SLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 352 NWAKQNGCPVGPGRGSGAGSLVAYSLKITDLDPLKYSLLFERFLNPERVSMPDFDIDFCQ 411 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 R VI YV+ KYG + V+QI+TFG+L +K+ +RDVGR LQ+P+ D+L KL+P Sbjct: 412 ANRGRVIEYVREKYGKDAVSQIVTFGTLSSKSVIRDVGRVLQLPFGLCDKLSKLVPIVQN 471 Query: 485 HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 P+ L+ AIA + + + + + L++++ KLE L R+ HA G++I +S Sbjct: 472 KPLHLEKAIATEPEMMQI-VKEEEAEELMDLAMKLEDLTRNLGMHAGGVLIAPGKISDFC 530 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----VDLS 599 +Y+ PV+ ++ +E+ GL+KFDFLGL+ LT+++ + +F+ Q K D++ Sbjct: 531 GVYQADEHASPVSMYDKGDVEEIGLVKFDFLGLRNLTIIEMAQNFIKQTTGKDIDVNDVN 590 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 + P DD Y + T +FQ ESSGM++ L + +E+IIA VSLYRPGP+D I Sbjct: 591 IAPLDDQAAYQIFRDANTTAVFQFESSGMKKMLSQARTTNLEEIIAFVSLYRPGPMDLIP 650 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + R G K +HPL+ P+L+ T G+++YQEQVMQ AQ++ GYSL AD+LRRAMGK Sbjct: 651 DFIARMKGA-KFEYMHPLLAPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGK 709 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K EEM K ++ F GA+K GI++ A IF+ + KFA YGFNKSHAAAYA +S+QTAW+ Sbjct: 710 KKVEEMVKHRDIFAQGAAKQGINREKADEIFDYMEKFAGYGFNKSHAAAYAYVSFQTAWL 769 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFN-IQIMPPSVNTPCVDFKVGDNR-IY 836 K HYP EF+AA+M+ E+DN +++K F DAR + N I +PP VN F + + I Sbjct: 770 KAHYPAEFMAATMSSELDNTDQLKIFYDDARSKLNGITFLPPDVNESYYRFVPNNQKQIR 829 Query: 837 YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y+L AIKG G I+ A + F +L DFC RV + +NRR +E+L+ GA D Sbjct: 830 YALGAIKGTGEAAVNAIVAARESGGKFKNLFDFCERVGKQHINRRTIEALIRGGAFDGLE 889 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENSS 949 +R LL N++ Q ++ N A++ G F +++ + + S Sbjct: 890 TNRALLLA---NVELALQNADQKANN------ANQGGLFDMLDDAIEELEMLPEKAWSES 940 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMG---------------IKGYEESVATIRGNN 994 + E++ +GFY SGHP + ++ +R+ I G+ + TI G N Sbjct: 941 QKLAEEKQAIGFYLSGHPFEPHRAEVRQFSKTPLAQLRPAQHTQLIAGFATQIRTIMGKN 1000 Query: 995 IRLAAMVV 1002 + A+ + Sbjct: 1001 GKFIAITL 1008 >gi|111115407|ref|YP_710025.1| DNA polymerase III subunit alpha [Borrelia afzelii PKo] gi|110890681|gb|ABH01849.1| DNA polymerase III, subunit alpha [Borrelia afzelii PKo] Length = 1161 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1019 (39%), Positives = 614/1019 (60%), Gaps = 33/1019 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKHDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ ++V+ + +PL N+S +++ ED A D+++ + S ++R + Sbjct: 195 HGIKDQDIVNERLVEYSKELGVPLTVANDSHYVNREDASAQDIIVCIGTGAKKSDENRLK 254 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQ 304 + T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + + Sbjct: 255 METNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEFNTLG 314 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L + GL+ R + R +EL+VI RM F GYFLIV DFI Sbjct: 315 EY----LEYLTLEGLKFRYKT-------LTSKIKDRAFYELSVIIRMGFEGYFLIVWDFI 363 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC Sbjct: 364 KFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 423 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + RDE+I+YV NKYG ++VAQIITFG+L+AKA ++DV R L +P+++ + L K IP+ P Sbjct: 424 EGRDEIIKYVTNKYGEDKVAQIITFGTLKAKAVVKDVARVLDIPFAESNELTKFIPDGPK 483 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ VP Sbjct: 484 --VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYVP 541 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602 +Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + IP Sbjct: 542 LYKDYKQGSISTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNIP 599 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 600 DNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQFI 659 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK + Sbjct: 660 AAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKE 719 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K + Sbjct: 720 DEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKAN 779 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L I Sbjct: 780 YPEYFMAANLTNEINNNDKLSYYIEESKAMGINVLKPDINRSFREFRVTDSGISYGLNGI 839 Query: 843 KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K +G I+ E + + S EDF RVD K +N++ LES + +G D +R L Sbjct: 840 KNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLNQNRKTL 899 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 ++LD + + + N+ ++F + + + + S E+ +L Sbjct: 900 FENLDRLIEVVSEDKNNKRLGQNSLFDVLESQESIQQSFNYQVLKEYSYSELLGFEKELL 959 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT-RKGSRIGW 1017 GFY SGHPLD YK + + +A + + ++ + ++ S + +T R SR+ + Sbjct: 960 GFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSIVQFSGILNSVKIIQTKRNNSRMAF 1018 >gi|154687056|ref|YP_001422217.1| DNA polymerase III DnaE [Bacillus amyloliquefaciens FZB42] gi|154352907|gb|ABS74986.1| DnaE [Bacillus amyloliquefaciens FZB42] Length = 1115 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1031 (38%), Positives = 614/1031 (59%), Gaps = 48/1031 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQVHS YSLL A S+ ++ + ++A+TD N ++ A+EF + + GI+P Sbjct: 5 SFVHLQVHSGYSLLNSAASVKELVTQAKELGYSSLALTDENVMYGAIEFYKACKSNGIKP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG I D T P ++LL T GYQ L+++ S + + +G Sbjct: 65 IIGLTASIYTDD---------TELEAHP-LILLAETNTGYQNLVKISSALQSMAKGGMKR 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 + W++ EGLI +T G +G I+ + A + F++LFGD R Y+ Q Sbjct: 115 K----WMKSY-HEGLIAITPGENGYIESLLQTGKFEEAVRAAEGFRELFGDGRFYLGYQP 169 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +G++ E ++++L+ E+ + A + ++ +ED +A+ L A+ +D+ Sbjct: 170 FKGHETLSE-EILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGE--KWEDQSGN 226 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPILPRFIEKECDDIQK 305 PD YL+ EM +++ PEA+E IAR+C + Q P P K DD Sbjct: 227 LPDLYLRAPEEMAELYTRHPEAIEAAARIARQCRVDVSLGQTQLPSFPAPDGKSADDYLA 286 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E +E GL +R G + +RL++EL+VI RMKFS YFLIV DF++ Sbjct: 287 EICHE-------GLRLRF-------GTPDERAVRRLEYELDVIRRMKFSDYFLIVWDFMK 332 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A + I GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DIDF Sbjct: 333 YAHEKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDIDFPDT 392 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI+YVQNKYG VAQIITFG+L AKAALRD GR + + D+L +LIP+ P Sbjct: 393 RRDEVIQYVQNKYGAMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPSKPG- 451 Query: 486 PVSLQAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 ++L+ S RL++ +V ++ +I++K+EGL RH STHAAG+V+ PLS++VP Sbjct: 452 -MTLEEARRQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLSEVVP 510 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603 + ++ + +TQ+ M +E GL+K DFLGL+ LTL++ + + K+D S I + Sbjct: 511 L-QEGHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFSEISY 569 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 D +T+ LL+ T GIFQLESSGMR L+ ++P +EDI+A+ +LYRPGP++NI ++ + Sbjct: 570 QDEKTFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIPLFID 629 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ ++ H + +L +T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK K+ Sbjct: 630 RKHGRARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKQKD 689 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +D+++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I YQ A++K HY Sbjct: 690 ILDRERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHY 749 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P+ F+ +T + N +KI ++ +A+ IQ++PPS+N F + + YSL A+K Sbjct: 750 PLYFMCGLLTSVIGNEDKISQYLHEAKGSGIQVLPPSINKSGFPFAPENGAVRYSLRAVK 809 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG + + I +A KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F +R LL Sbjct: 810 NVGVSAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRAALLA 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRVLGFY 962 S+D ++A+ + + +F E + K + E+F + + +RFE E LG Y Sbjct: 870 SVDVALEHAELFRAD--DDQMGLFLEESFSIKPKYVEAEEFPLVD-KLRFEKE--ALGVY 924 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 FS HPL ++ +L+K G + + +G + + A++ + +T+ G + ++T S+ Sbjct: 925 FSSHPLSAFRDLLKKRGAQAITAARQMPKG-QLSIGALLAGIKTIRTKTGQHMAFLTLSD 983 Query: 1023 PAKEYEANFFP 1033 E EA FP Sbjct: 984 ETGEMEAVVFP 994 >gi|148239403|ref|YP_001224790.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7803] gi|147847942|emb|CAK23493.1| DNA polymerase III alpha subunit [Synechococcus sp. WH 7803] Length = 1173 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1060 (38%), Positives = 607/1060 (57%), Gaps = 53/1060 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ A PA+A+TD ++ A+E + AGI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPQMVERAKALGMPALALTDHGVMYGAVELLKLCKGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P +V+L A GY+ L++L S +L Sbjct: 62 IIGNEMYV-------INGSIDDPQPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRG 114 Query: 127 QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + R C+ L + +EGLI+ T G I +A VA ++++FGD Y Sbjct: 115 RGIFSRACIDKHLLQQHSEGLIVATACLGGEIPQAIMRERPDVARDVARWYQEVFGDDFY 174 Query: 184 VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR ++V++A + LVATN++ +L+ D EAHD L+ V ++S Sbjct: 175 LEIQDHGSPEDRIVNVEIVKIAQELGIQLVATNDAHYLTSNDVEAHDALLCVLTGKLISD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R T YLK+ EM +F+D + +A+ NTV +A + + +PRF Sbjct: 235 EKRLRYTGTEYLKSEEEMGRLFADHLDPAVVQQAIANTVSVAEKVEDYDILGRYQMPRFP 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E LR GL RL G A G Y RL EL ++ +M F Y Sbjct: 295 IPE----GHTPVTYLREVTEQGLRDRL--GLSADGTIEATYADRLSHELQIMEQMGFPTY 348 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+V D+I++A++ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMP Sbjct: 349 FLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMP 408 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DFC +RR EVI YV +YG E+VAQIITF + +KA L+DV R L +PY DRL Sbjct: 409 DIDTDFCIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468 Query: 477 KLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 KLIP P L+A I D+S F+E DP V R ++++ ++EG + HAAG+ Sbjct: 469 KLIPVVRGKPAKLKAMIGDESPNPDFKEKYDKDPVVQRWVDMAMRIEGTNKTFGVHAAGV 528 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI PL +LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ +AQ Sbjct: 529 VIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAQS 587 Query: 593 -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G ++D +P D T+ LL GIFQLES+GMRQ + ++P +EDI ++++LYR Sbjct: 588 SGERIDPDQLPPQDQGTFDLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYR 647 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+D ++ + NRK+G+E I H ++P+L ET G+++YQEQ+M+IAQ L+GYSL E Sbjct: 648 PGPLDAGLIPKFINRKHGREAIDFAHSTLEPILSETYGIMVYQEQIMRIAQDLAGYSLGE 707 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EM K + F+ GAS+ G+ + +A +F+ + FA+Y FNKSH+ AY Sbjct: 708 ADLLRRAMGKKKVSEMQKHRGIFVKGASERGVDEKVADELFDQMVLFAEYCFNKSHSTAY 767 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 ++YQTA++K HYPV ++AA +T+ +K++++ + I++MPP VN DF Sbjct: 768 GAVTYQTAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGTDFT 827 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D RI + L+A++ +G R ++ + AD PF+SL D C RV S +NRR LESL+ Sbjct: 828 PRDQRILFGLSAVRNLGDGAIRALIRSREADGPFESLADLCDRVPSSVINRRSLESLIHC 887 Query: 889 GALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL 940 GA+D +R QL+ LD + +A ++R + N+F A + ++L Sbjct: 888 GAMDALEPEANRAQLIADLDLLLDWATSRARDRASGQGNLFDLMAGAAGGEADAPTDLSL 947 Query: 941 EKFSVE----NSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIRGN 993 + + S + + E+ ++GFY S HPL P +L +G+ G EE + + Sbjct: 948 APKAAPVKDYHPSEKLKLEKDLVGFYLSDHPLKQLTPPARLLAPIGLGGLEEQADKAKVS 1007 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I AMV +Q TRKG R+ + + EA FP Sbjct: 1008 AI---AMVSEMRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044 >gi|302389432|ref|YP_003825253.1| DNA polymerase III catalytic subunit, DnaE type [Thermosediminibacter oceani DSM 16646] gi|302200060|gb|ADL07630.1| DNA polymerase III catalytic subunit, DnaE type [Thermosediminibacter oceani DSM 16646] Length = 1145 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1029 (38%), Positives = 617/1029 (59%), Gaps = 41/1029 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH++YSLL+GA ++ + + A+AITD ++ ++F + A G++PI Sbjct: 4 FVHLHVHTNYSLLDGACEISKLAKRAKELGMNAMAITDHGVMYGIIDFYKTMKAEGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + M ++ +VLL GY+ L++LVS + L+ R Sbjct: 64 IGCEVYVAKR---SMADRQPGIDDDQYHLVLLAENETGYKNLVKLVS-LGFLEGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + L++ ++GLI L+ +G I + A++ ++FG ++ LQ H Sbjct: 120 VDKEVLKK-HSQGLIALSACLAGEIPYFLENGEYEKAKEAACELNEIFGKGNFFLELQDH 178 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ R + + +L+ +PLVATN+ ++ + D HD ++ + V +DR + Sbjct: 179 GIPEQKRVNANLCRLSKETGIPLVATNDVHYILKSDEPVHDAMLCIQTGKTVKDEDRLKF 238 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-- 305 + + YLK++ EM +FS +PEALENTV IA+RC+ L LP F ++ + Sbjct: 239 NSAELYLKSQEEMWRLFSHIPEALENTVMIAQRCNVELDFGRIHLPHF------EVPQGF 292 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 +++ L GL R G + + RLD+EL+VI RM +S YFLIV DF+ Sbjct: 293 TQDSYLEKLCYEGLVERY-------GRITPEIKARLDYELDVIKRMGYSSYFLIVWDFVN 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+KN I VGPGRGS AGS+ AY L IT++DPLR++LLFERFLNP+R++MPD D+DFC + Sbjct: 346 FARKNGIMVGPGRGSAAGSLVAYCLHITNVDPLRYNLLFERFLNPERVTMPDIDVDFCYE 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG +RVAQI TFG++ A+AA+RDVGR L PY +VD + K++P +P Sbjct: 406 RRQEVIDYVVRKYGEDRVAQIGTFGTMAARAAIRDVGRVLGYPYGEVDTVAKMVPMEPGM 465 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + ++ + + RL++ ++ LEG RHASTHAAG+VI PL +LVP+ Sbjct: 466 TIE-KALVLNPELKKLYDENERIKRLIDTAKGLEGFPRHASTHAAGVVISSEPLVELVPL 524 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 ++ S++ TQF M +E+ GL+K DFLGL+TLT+++ +L + Q RG+ V L +P D Sbjct: 525 HKVGDSNVS-TQFTMTALEELGLLKMDFLGLRTLTVIRDALGLIEQTRGISVVLDELPLD 583 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662 D + Y LL+ T G+FQLESSGMR L ++P+ EDIIA++ LYRPGP+ + + Sbjct: 584 DEKVYDLLSRGETTGVFQLESSGMRNLLRELRPERFEDIIAVIGLYRPGPLGSGAADEFI 643 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN + I +HP + P+L+ET G+I+YQEQVM+IAQ L+G++L++AD+LR+AMGKK + Sbjct: 644 KNKNNQGSIKYLHPRLKPILEETYGIILYQEQVMKIAQDLAGFTLAQADILRKAMGKKQQ 703 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 M+ Q+ FI G +NGI + A NIFE ++ FA YGFNKSHAAAYA+I+YQTA++K H Sbjct: 704 SVMEAQRAAFIRGCVENGIDEETAANIFEEISYFAGYGFNKSHAAAYAMIAYQTAYLKAH 763 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 +PVEF+AA +T N +K+ ++ + R I+++PP +N F +I + L A+ Sbjct: 764 FPVEFMAALLTSVRHNTDKVAQYIAECRHMGIEVLPPDINESFEVFTAVSGKIRFGLTAV 823 Query: 843 KGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K VG A+ I++ +K F S DFC ++D ++N++ +ESL+ +GA D G R QL Sbjct: 824 KNVGEGMAKAIIKCRDEKGRFVSFSDFCEKLDQTEINKKAVESLIKSGAFDSLGARRSQL 883 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV----ENSSVRFENEQR 957 L+ +++ Q +K + ++F E D + E + EN + E E Sbjct: 884 LKVYEDVLNRVQKKQKQQGKNQLSLF--EMIRVDDVVEDELPDIPEYPENELLAMEKE-- 939 Query: 958 VLGFYFSGHPLDVYKPILRK---MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 VLG Y SGHPL +K +L K + K + + N+ + ++S+ + K+ K ++ Sbjct: 940 VLGLYLSGHPLREFKDLLEKTTTLCSKDLADEEKEFKDNSAVVVGGIISEIKLKSTKDNK 999 Query: 1015 I-GWVTFSE 1022 + ++T + Sbjct: 1000 LMAFITLED 1008 >gi|161869391|ref|YP_001598558.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 053442] gi|161594944|gb|ABX72604.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 053442] Length = 1109 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1002 (39%), Positives = 578/1002 (57%), Gaps = 42/1002 (4%) Query: 42 PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101 PA+ I+D N F ++F + +AGI+PI + I N PF +L Sbjct: 2 PALGISDLMNEFGLVKFYKACRSAGIKPIGAADVWIGN------PNAPDKPF----RAML 51 Query: 102 LVSTAEGYQRLIELVSRMYL-LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160 ++ GY RL EL++ Y+ D+ + WL+ GLI L+G G + Sbjct: 52 IIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLL 111 Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSL 218 + A L + F D Y+ LQR + S V+LA LP+VAT+ + Sbjct: 112 NGNEDAARAAALKYAAWFPDAFYMELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQ 171 Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 F+S +D+ AH+ + +A V++ K RPR TPD + M+ F+DLPEALENTVEI Sbjct: 172 FMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPDQFFIPPETMLERFADLPEALENTVEI 231 Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQD 336 A+RC+ + + LP F D + +++ +L NK + V+L + + Sbjct: 232 AKRCNLHITLGKNFLPLF--PTPDGLSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPE 289 Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 Y++RLDFELN+I +MKF GYFLIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+D Sbjct: 290 YQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLD 349 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 PL+++LLFERFLNP+R+SMPDFD+DFCQ R VI YV+ KYG + V+QI+TFG++ +KA Sbjct: 350 PLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYVREKYGAKAVSQIVTFGTMSSKA 409 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEIS 515 +RDVGR L++P+ D+L KLIP + P+ L A+ + + +E A+ D L+ ++ Sbjct: 410 VIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLA 468 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +KLE L R HA G++I +S P+Y+ S PV+ ++ +E GL+KFDFLG Sbjct: 469 KKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLG 528 Query: 576 LKTLTLLQKSLDFLAQRGVK------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 L+ LT+++ +AQ +K +D+ IP DD Y + T +FQ ES+GM+ Sbjct: 529 LRNLTIIE-----MAQNNIKNTTGDIIDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMK 583 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + L+ E++IA VSLYRPGP+DNI + R G+E IHPL++ +L T G++ Sbjct: 584 KMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIM 642 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQ AQ++ GYSL AD+LRRAMGKK EEM K +E F GA+K GIS+ + I Sbjct: 643 VYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEI 702 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 F + KFA YGFNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D Sbjct: 703 FNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDC 762 Query: 810 RQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867 R I+ +PP +N F D +I Y+L AIKG G I A + F L D Sbjct: 763 RANGIEFLPPDINESDYRFTPYPDMKIRYALGAIKGTGEAAVESITSARQSGGKFTGLLD 822 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 FC RV + +NRR LE+L+ GA D +R LL ++D A +K +F Sbjct: 823 FCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMNNAD--QKAANTNQGGLF 880 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + + + L + + S + E+ V+GFY SGHP Y +R++ + + Sbjct: 881 DMMEDAI-EPVRLVDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIA----PQKL 935 Query: 988 ATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + ++ +++RLA V + + ++G +I +V+ + + + E Sbjct: 936 SKLKPQDSVRLAGFVTAVRTMMGKRG-KIAFVSLEDLSGQVE 976 >gi|296327603|ref|ZP_06870148.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155277|gb|EFG96049.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 1133 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1026 (38%), Positives = 609/1026 (59%), Gaps = 67/1026 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSL EG S+++ L K ++A+TD N+F A+EF QKA GI+P Sbjct: 4 NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKKMGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L I +D + S+ LL GY+ L++L S +Y ++ ++ + Sbjct: 64 IIGLELPITNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFG-DRLYVNLQ 187 ++ L+E ++ LI L+ +G I +A NSS +++ + ++F + Y+ +Q Sbjct: 112 KLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENFYLEIQ 170 Query: 188 RHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + E++++ LA H+L LVATNN ++ + YE HD+++ + V + Sbjct: 171 A----NELSETKIINDKFYDLAKFHDLELVATNNVYYVDRDGYELHDIIICIQSGLKVKE 226 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K+R R ++ + YLK++ EM + +A+EN IA C+ + P + Sbjct: 227 KNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANYIASLCNIEITFGNLQFPYY----- 281 Query: 301 DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354 ++ E +G++ L I K Y +D RL++EL+VI +M +S Sbjct: 282 -EVPSE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYS 331 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYF++V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S Sbjct: 332 GYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 391 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+ Sbjct: 392 MPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDK 451 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 L KLI P + + + ++ + D + ++++++ ++E RH STHAAGI+I Sbjct: 452 LAKLIS--PFQTLE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILI 508 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593 L + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + Sbjct: 509 TKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKN 568 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + VDL IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPG Sbjct: 569 IDVDLYKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPG 628 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+ + +V + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD Sbjct: 629 PLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEAD 688 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK M + +E+FI A NG ++ + IFEL+ KFA YGFNKSH+ AYA+ Sbjct: 689 LLRRAMGKKNFAIMRENREKFIERAVHNGYTEEKSEEIFELIDKFAGYGFNKSHSVAYAM 748 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISY TA+ K HYP + AA MT E+ I + DA++ +++ P++N+P F+V Sbjct: 749 ISYWTAYFKVHYPAYYYAAVMTSEISETGDIAYYFNDAKEHEVRVYSPNINSPSAYFEVK 808 Query: 832 DNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 ++ I YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GA Sbjct: 809 NDGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGA 868 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVEN 947 LD +R + S+D + Y+ K + N+F T DK L E F+++ Sbjct: 869 LDEIKGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDE 927 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE------SVATIRGNNIRLAAMV 1001 + E+ LGFY S HPLD YK IL IK E V G I L ++ Sbjct: 928 ---KLNKEKEFLGFYLSSHPLDKYKDILTTFSIKKLSEFDLEGNQVIKTFGTIINLKKII 984 Query: 1002 VSKQQK 1007 K+++ Sbjct: 985 TKKEEQ 990 >gi|224534774|ref|ZP_03675346.1| DNA polymerase III subunit alpha [Borrelia spielmanii A14S] gi|224514022|gb|EEF84344.1| DNA polymerase III subunit alpha [Borrelia spielmanii A14S] Length = 1161 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1014 (39%), Positives = 612/1014 (60%), Gaps = 32/1014 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIVSKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKHDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ ++V+ + +PL A N+S +++ ED A D+++ + S ++R + Sbjct: 195 HGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDAVAQDIIVCIGTGAKKSDENRLK 254 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQ 304 + T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E D + Sbjct: 255 METNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDEFKITFPGPILPDYQIPIEFDTLG 314 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L + GL+ R + R +EL VI RM F GYFLIV DFI Sbjct: 315 EY----LEYLTLEGLKFRYKT-------LTSKIKDRAFYELGVIIRMGFEGYFLIVWDFI 363 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC Sbjct: 364 KFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 423 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + RDE+I+YV N+YG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP P Sbjct: 424 EGRDEIIKYVTNRYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPEGPK 483 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 VSL+ + +D+ +E + P L++ + LEG+ RHASTHAAGIVI PL+ VP Sbjct: 484 --VSLKEVLNDNSLKEYFTSKPIYKELMDAALVLEGMNRHASTHAAGIVISKTPLTDYVP 541 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602 +Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + IP Sbjct: 542 LYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFRIKNIP 599 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 600 DNDVKTFKMLGEGKSASVFQFESEGMQQILKDTKPDNIEDLIALNALYRPGPMQFIPQFI 659 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK + Sbjct: 660 AAKKGVKRIKYPHPDLKEVLRSTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKE 719 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K + Sbjct: 720 DEMNEMKVDFLRGAVEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKAN 779 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L I Sbjct: 780 YPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLNGI 839 Query: 843 KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K +G I+ E + + S EDF RVD K +N++ LES + +G D +R L Sbjct: 840 KNLGGIVVDLIIDEREKNGKYSSFEDFVRRVDDKVINKKFLESAIKSGLFDSLDKNRKTL 899 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 ++LD + + + N+ ++F + + + F + S E+ +L Sbjct: 900 FENLDRLIEVVSEDKNNKKLGQNSLFDVLGSQESIQQSFNYQVFEEYSYSELLGFEKELL 959 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 GFY SGHPLD YK + + +A + + ++ + ++ S + +T++ + Sbjct: 960 GFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSTVQFSGILNSVKIIQTKRNN 1013 >gi|152990427|ref|YP_001356149.1| DNA polymerase III subunit alpha [Nitratiruptor sp. SB155-2] gi|151422288|dbj|BAF69792.1| DNA polymerase III, alpha subunit [Nitratiruptor sp. SB155-2] Length = 1174 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1048 (37%), Positives = 608/1048 (58%), Gaps = 49/1048 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+F HL +H+ YSLL+GA + + K A+A+TD N+F A++F + A G++ Sbjct: 3 PNFTHLHLHTEYSLLDGANKIKALAKKAKELGMSAVAMTDHGNMFGAIDFYKTMKAEGLK 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + D+L G + L GY+ L+ +S M + Sbjct: 63 PIIGMEAYLHNSDDL-----GDKSTRQRFHLCLFAKNEIGYKNLM-FLSSMSYIKGFYYY 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV---------AEKRLLTFKKLFG 179 RI L E +EGLI + G ++ N A+K L +K++FG Sbjct: 117 PRINKKLLAE-HSEGLICTSACLQGEVNWHLNTNERNTKFGAKGYEEAKKVALWYKEVFG 175 Query: 180 DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ L RH +D+ + Q+++L+ + +VATN++ +L ++D E H+ M +A + Sbjct: 176 DDFYLELMRHGIHDQLAIDEQIIKLSLETGIKIVATNDTHYLEKKDAEPHEAFMCIAMNK 235 Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295 + +R R + + YLK+ E+ +++D+PEALENT EI +C+ L + P P F Sbjct: 236 LYDDPNRLRHSVHEFYLKSPEEIAKLYADIPEALENTQEIVDKCNLELNLGNPTPPNFKF 295 Query: 296 ---IEKECD-DIQKEEENELRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 KE ++ E N V GL+ RL + K H Q Y RL E Sbjct: 296 TVEYAKEYGLEVPTSERYSFENDEVLFEYICKEGLQKRLEY--VPKEQH-QKYWDRLQHE 352 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +++I +MKF GY +IV DF++ AKK IPVGPGRGS AGS+ AYA+ ITDIDPL+++LLF Sbjct: 353 IDIIKKMKFPGYMIIVWDFVREAKKRGIPVGPGRGSAAGSLVAYAMGITDIDPLKYNLLF 412 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD DIDFCQ+RR E+I YV KYG VAQ+ITFG+L AK +RDV R Sbjct: 413 ERFLNPERVSMPDIDIDFCQERRGEIIDYVVQKYGRYNVAQVITFGTLLAKGVIRDVARV 472 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L + Y+ DR+ KLIP+ + +A +S+ +E +DP +R+ + LEGL R+ Sbjct: 473 LGLSYNDGDRMAKLIPDKLGITLK-EAYEQESKIKELIESDPKFERVWRFALALEGLKRN 531 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A HAAG+VI + L P+Y+ + VTQ+++ ++E LIKFDFLGLKTLT++ Sbjct: 532 AGMHAAGVVISNEELWHKTPLYKPSGEETIVTQYSLNFLEDVDLIKFDFLGLKTLTVIDN 591 Query: 585 SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++ + +R K+D + I +D + Y L+ + TLG+FQ+ES GM++ ++P EDI Sbjct: 592 AVKLVEKRYNTKIDWNRIDLNDKKVYDLIQSGHTLGLFQIESDGMQRLNARLKPTTFEDI 651 Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKI------VSIHPLIDPMLKETQGVIIYQEQV 695 IA+++LYRPGP+++ ++ + RK+G++++ VS L + L+ T G+I+YQEQV Sbjct: 652 IAVLALYRPGPMESGMLDDFIERKHGRKQVYYPFEEVSFDELKET-LEPTYGMIVYQEQV 710 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQI Q + G+SL EAD++RRAMGKK ++ M++ K F+ AS+ G + +FEL+ K Sbjct: 711 MQIVQTIGGFSLGEADIIRRAMGKKKRDLMEEYKREFVKRASERGFDAKKSEILFELIEK 770 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA YGFNKSH+AAYA+I++QTA++K +YP EF+AA +T E DN +KI K+ + ++ I+ Sbjct: 771 FAGYGFNKSHSAAYAMITFQTAYLKAYYPQEFMAALLTSEQDNTDKIVKYVDEVKRLGIK 830 Query: 816 IMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871 ++PP VN ++F G++ I + L AIKGVG + I+EA + F L DF R Sbjct: 831 LLPPDVNLSSLEFNATTIDGEDVILFGLGAIKGVGKSAVLSILEARNEGVFKDLNDFLQR 890 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +D K+N++VLE+L+ +GA+D FGYSR +L ++ I + + + + ++F + Sbjct: 891 IDPNKVNKKVLEALIKSGAMDSFGYSRRTMLLGIEKIVTASHEIARAKKMAENSLFGDAQ 950 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 K+ LE + E E+ LGFY SGHPLD ++ L K+ + Sbjct: 951 ELIDIKVELEDLGEYDMKQILEFEKETLGFYVSGHPLDPFRSELEKIHYTLSSDLENIAD 1010 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 + V + K + KG++ G V+ Sbjct: 1011 SSEALFVGKVEEIKTKISNKGNKFGIVS 1038 >gi|224531850|ref|ZP_03672482.1| DNA polymerase III subunit alpha [Borrelia valaisiana VS116] gi|224511315|gb|EEF81721.1| DNA polymerase III subunit alpha [Borrelia valaisiana VS116] Length = 1161 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/977 (40%), Positives = 598/977 (61%), Gaps = 40/977 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 HRGYDRYRESQVVQ---LAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 H +E +V + Y+ EL PL A N+S ++++ED A D+++ + S + Sbjct: 195 HG----IKEQNIVNERLVEYSRELGVPLTAANDSHYVNKEDAVAQDIIVCIGTGAKKSDE 250 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKEC 300 +R ++ T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E Sbjct: 251 NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + + L + + GL+ R + R +EL+VI M F GYFLIV Sbjct: 311 NTLGEY----LEHLTLDGLKFRYKT-------LTNKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L++ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DSPK--VSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKI 595 Query: 601 --IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 596 KNIPDNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFI 655 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMG Sbjct: 656 PQFIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMG 715 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK ++EM++ K F+ GA + G K +A IFELL F+ YGFNKSHAAAY++I+YQTA+ Sbjct: 716 KKKEDEMNEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAY 775 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y Sbjct: 776 LKANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYG 835 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L IK +G I+ E + + S EDF RVD K +N++ LES + +G D + Sbjct: 836 LNGIKNLGGIVVDLIIDEREKNGKYISFEDFVRRVDDKVINKKFLESAIKSGLFDSLDQN 895 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENE 955 R L ++LD + + + N+ ++F + + + F + S E Sbjct: 896 RKTLFENLDQLIEVVSEDKNNKKLGQNSLFDALENQDSIQQSFNYQVFKEYSYSELLGFE 955 Query: 956 QRVLGFYFSGHPLDVYK 972 + +LGFY SGHPLD YK Sbjct: 956 KELLGFYVSGHPLDPYK 972 >gi|52081424|ref|YP_080215.1| DNA polymerase III DnaE [Bacillus licheniformis ATCC 14580] gi|52786800|ref|YP_092629.1| DNA polymerase III DnaE [Bacillus licheniformis ATCC 14580] gi|52004635|gb|AAU24577.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC 14580] gi|52349302|gb|AAU41936.1| DnaE [Bacillus licheniformis ATCC 14580] Length = 1114 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1037 (38%), Positives = 603/1037 (58%), Gaps = 60/1037 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQVHS YSLL A S+ ++ K A+A+TD ++ A+EF + GI+PI Sbjct: 3 FVHLQVHSGYSLLNSAASVEDLTAKAKELGYSAMALTDDEVMYGAVEFYKSCKKRGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +++ +P +VLL T +GYQ L+++ S + Q K Sbjct: 63 IGLTASVLTDEKEQLS------YP----LVLLAKTNKGYQNLLKISSVL----QSKSKTG 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 I WL+ EGLI LT G + ++ + A+ L +FG+ Y++ Q + Sbjct: 109 IKEKWLKSY-HEGLIALTTGGTSHVEALLKEGLIEEAKDAALRCLSIFGEGSFYLSYQPY 167 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +G D ++++L+ +P+ AT + ++ +ED A+ L A+ +++ + Sbjct: 168 KG-DPLLSERILELSEHTGIPIAATGDVRYIEKEDAAAYTCLKAIKAGEKLNEDMKAEGD 226 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 LK +EM+ I+ D P+ALENTV+IA RC L + LP++ K ++ Sbjct: 227 LHLELKPPAEMLDIYRDRPDALENTVKIADRCQVDLSLGQTRLPKYPAPSG----KNADD 282 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L GL+ R ++Y +RL +EL VI M FS YFLIV DF+++A Sbjct: 283 YLAELCFLGLKKRFEAAP-------KEYVERLKYELKVIRDMAFSDYFLIVWDFMKFAHD 335 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N I GPGRGS AGS+ AY L ITD+DPL+ LLFERFLNP+R+SMPD DIDF RRDE Sbjct: 336 NGIITGPGRGSAAGSLVAYTLFITDVDPLKHKLLFERFLNPERISMPDIDIDFPDTRRDE 395 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+YV+NKYG VAQI TFG+L AKAALRDVGR + + + D+L KLIP+ P V+L Sbjct: 396 VIQYVKNKYGALHVAQITTFGTLAAKAALRDVGRVMGISPKEADQLAKLIPSKPG--VTL 453 Query: 490 QAIADDSRFREARLADPSVDR----------LLEISQKLEGLYRHASTHAAGIVIGDRPL 539 +EAR P +D+ + + +QK+EGL RH S HAAG+V+ + PL Sbjct: 454 ---------KEARALSPELDKRLNGSKKLQDIFKTAQKIEGLPRHTSIHAAGVVLSEEPL 504 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVD 597 + ++P+ ++ + +TQ++M ++E GL+K DFLGL+ LTL++ K+L ++R V +D Sbjct: 505 TNIIPV-QEGHGGVYLTQYSMGYLEDLGLLKMDFLGLRNLTLIESIKTLIEKSER-VTID 562 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 S IP+DD +T+ LL T GIFQLES+GMR L+ ++P +EDI+A+ +LYRPGP++N Sbjct: 563 FSAIPYDDEQTFKLLAEGDTTGIFQLESAGMRNVLKRLKPSSLEDIVAVNALYRPGPMEN 622 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I +Y RK+G+ + H + +LK+T GVI+YQEQ+M IA ++G+ L EAD+LRRA+ Sbjct: 623 IPLYIERKHGRVPVSYPHEDLADILKDTYGVIVYQEQIMMIASRMAGFRLGEADLLRRAV 682 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK KE +D ++ FISG K G S A +++L+ KFA+YGFN+SHA AY++I YQ A Sbjct: 683 GKKNKEILDTERNHFISGCLKKGYSVQAANEVYDLIVKFANYGFNRSHAVAYSMIGYQLA 742 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP+ F+ +T + N EK+ ++ +A+ + ++ PS+N F V + + Y Sbjct: 743 YLKAHYPLYFMCGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFVVENGALRY 802 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 SL A+KGVG + I A +KPF L DFC R K +NR+ +E+L+FAGA+D FG + Sbjct: 803 SLRAVKGVGIAAVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGEN 862 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQ 956 R LL S+D ++A+ + N F E T K E+ + + +E+ Sbjct: 863 RATLLASVDVALEHAELFAGD--NDQLGFFLDEGLTIKPKYAETEEMPLVD---LLAHEK 917 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LG YFS HPL V++ L + G + +A+ R L ++ + +T+ G + Sbjct: 918 ETLGIYFSDHPLSVHRKKLDRAGALPIIQLLASGR-KKAALGGLLTRMKTIRTKTGQTMA 976 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++ S+ + E EA FP Sbjct: 977 FLELSDESGEMEAVVFP 993 >gi|319647332|ref|ZP_08001554.1| DnaE protein [Bacillus sp. BT1B_CT2] gi|317390679|gb|EFV71484.1| DnaE protein [Bacillus sp. BT1B_CT2] Length = 1127 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1037 (38%), Positives = 603/1037 (58%), Gaps = 60/1037 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQVHS YSLL A S+ ++ K A+A+TD ++ A+EF + GI+PI Sbjct: 16 FVHLQVHSGYSLLNSAASVEDLTAKAKELGYSAMALTDDEVMYGAVEFYKSCKKRGIKPI 75 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +++ +P +VLL T +GYQ L+++ S + Q K Sbjct: 76 IGLTASVLTDEKEQLS------YP----LVLLAKTNKGYQNLLKISSVL----QSKSKTG 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 I WL+ EGLI LT G + ++ + A+ L +FG+ Y++ Q + Sbjct: 122 IKEKWLKSY-HEGLIALTTGGTSHVEALLKEGLIEEAKDAALRCLSIFGEGSFYLSYQPY 180 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +G D ++++L+ +P+ AT + ++ +ED A+ L A+ +++ + Sbjct: 181 KG-DPLLSERILELSEHTGIPIAATGDVRYIEKEDAAAYTCLKAIKAGEKLNEDMKAEGD 239 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 LK +EM+ I+ D P+ALENTV+IA RC L + LP++ K ++ Sbjct: 240 LHLELKPPAEMLDIYRDRPDALENTVKIADRCQVDLSLGQTRLPKYPAPSG----KNADD 295 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L GL+ R ++Y +RL +EL VI M FS YFLIV DF+++A Sbjct: 296 YLAELCFLGLKKRFEAAP-------KEYVERLKYELKVIRDMAFSDYFLIVWDFMKFAHD 348 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N I GPGRGS AGS+ AY L ITD+DPL+ LLFERFLNP+R+SMPD DIDF RRDE Sbjct: 349 NGIITGPGRGSAAGSLVAYTLFITDVDPLKHKLLFERFLNPERISMPDIDIDFPDTRRDE 408 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+YV+NKYG VAQI TFG+L AKAALRDVGR + + + D+L KLIP+ P V+L Sbjct: 409 VIQYVKNKYGALHVAQITTFGTLAAKAALRDVGRVMGISPKEADQLAKLIPSKPG--VTL 466 Query: 490 QAIADDSRFREARLADPSVDR----------LLEISQKLEGLYRHASTHAAGIVIGDRPL 539 +EAR P +D+ + + +QK+EGL RH S HAAG+V+ + PL Sbjct: 467 ---------KEARALSPELDKRLNGSKKLQDIFKTAQKIEGLPRHTSIHAAGVVLSEEPL 517 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVD 597 + ++P+ ++ + +TQ++M ++E GL+K DFLGL+ LTL++ K+L ++R V +D Sbjct: 518 TNIIPV-QEGHGGVYLTQYSMGYLEDLGLLKMDFLGLRNLTLIESIKTLIEKSER-VTID 575 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 S IP+DD +T+ LL T GIFQLES+GMR L+ ++P +EDI+A+ +LYRPGP++N Sbjct: 576 FSAIPYDDEQTFKLLAEGDTTGIFQLESAGMRNVLKRLKPSSLEDIVAVNALYRPGPMEN 635 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I +Y RK+G+ + H + +LK+T GVI+YQEQ+M IA ++G+ L EAD+LRRA+ Sbjct: 636 IPLYIERKHGRVPVSYPHEDLADILKDTYGVIVYQEQIMMIASRMAGFRLGEADLLRRAV 695 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK KE +D ++ FISG K G S A +++L+ KFA+YGFN+SHA AY++I YQ A Sbjct: 696 GKKNKEILDTERNHFISGCLKKGYSVQAANEVYDLIVKFANYGFNRSHAVAYSMIGYQLA 755 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP+ F+ +T + N EK+ ++ +A+ + ++ PS+N F V + + Y Sbjct: 756 YLKAHYPLYFMCGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFVVENGALRY 815 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 SL A+KGVG + I A +KPF L DFC R K +NR+ +E+L+FAGA+D FG + Sbjct: 816 SLRAVKGVGIAAVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGEN 875 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQ 956 R LL S+D ++A+ + N F E T K E+ + + +E+ Sbjct: 876 RATLLASVDVALEHAELFAGD--NDQLGFFLDEGLTIKPKYAETEEMPLVD---LLAHEK 930 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LG YFS HPL V++ L + G + +A+ R L ++ + +T+ G + Sbjct: 931 ETLGIYFSDHPLSVHRKKLDRAGALPIIQLLASGR-KKAALGGLLTRMKTIRTKTGQTMA 989 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++ S+ + E EA FP Sbjct: 990 FLELSDESGEMEAVVFP 1006 >gi|237736354|ref|ZP_04566835.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] gi|229421396|gb|EEO36443.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] Length = 1138 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/980 (39%), Positives = 600/980 (61%), Gaps = 39/980 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSLL+G +++ L + AIAITD NLF ALEF +KA GI+P Sbjct: 4 NFVHLHLHTEYSLLDGVGKIDDYLGRAKELGMQAIAITDHGNLFGALEFYKKARKKGIKP 63 Query: 70 IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125 IIG + + M+D +G+ ++LL EGY+ L+++ S ++ +G Sbjct: 64 IIGMEAYVCERGMEDK-----EGRNF-----HLILLARDNEGYRNLLKISSESFI--RGF 111 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFG-DRLY 183 R+ ++L+E +EGLI L+ G I R S + + +FG + + Sbjct: 112 YYKPRVDKNFLKE-HSEGLIALSACMQGEISRRILDMESEDKISSAIDEYVDIFGKENFF 170 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q + +++ ++ ++A + L LVATN++ +++E ++ D+L+ V +S Sbjct: 171 IEVQANGIKEQFELNEKLYEIAKQNNLKLVATNDTHYVNEGEHTLQDILICVQTGAKLSD 230 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + R R+ T + +LK+R +++ + EA++NT+ IA RC+ ++ P + C Sbjct: 231 EKRMRIETEELFLKSREQVLGQLGEKYLEAVDNTIIIAERCNVDIEFGHFKFPDYKIPTC 290 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 K E LR GL R G + +R+++EL +I +M ++GYF++V Sbjct: 291 ---VKTIEAFLRKLVYLGLSKRYPHGL------TKSIVERVEYELGIIEKMGYAGYFVVV 341 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +A++ NIP+GPGRGS AGS+ AYAL IT +DPL+++L+FERFLNP+R+SMPD DI Sbjct: 342 WDFIDFARRKNIPIGPGRGSAAGSLIAYALGITQLDPLKYNLIFERFLNPERISMPDIDI 401 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D CQ+RR EVI YV KYG ++VAQIITFG+++A+AA+RDVGR L P S++D + KL+P Sbjct: 402 DICQERRQEVIDYVIEKYGADKVAQIITFGTMKARAAIRDVGRVLNTPLSKIDAVAKLVP 461 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + +L+ + + FR+ L D + ++++IS K+E RHAS HAAGIVI PL+ Sbjct: 462 FNATIKQTLEGVEE---FRKQYLEDREIQKVIDISAKIENKVRHASVHAAGIVITKDPLT 518 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 VP+Y D ++ + TQ+ MK +E GL+K DFLGL+ LT LQ+++D++ + G ++ L Sbjct: 519 DTVPLYCDTKNKVVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGEEIRLE 578 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP + + Y LL+ T G+FQ+ES G+R+ L ++PD EDIIAL++LYRPGP+ + + Sbjct: 579 DIPLNSKKVYELLSRGDTSGVFQMESVGIRKILVKLKPDKFEDIIALLALYRPGPLGSGM 638 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V + N KNG +I HP ++ LKET GVI+YQEQVM+IA +++GYSL EAD+LRRAM Sbjct: 639 VDDFINGKNGITEIKYPHPSLEQTLKETYGVILYQEQVMKIANIMAGYSLGEADLLRRAM 698 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK + M++ +E+FI+ + +NG S+ A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA Sbjct: 699 GKKNVQIMEENREKFITRSIENGYSEEKALEMFELIDKFAGYGFNKSHSAAYALIAYWTA 758 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 + K HY + AA MT EM ++E I + DA+ N+++ P VN F V + I + Sbjct: 759 YFKAHYMKHYYAALMTSEMAHIEDIAYYVDDAKVHNLKLHLPDVNRATSKFIVDKDGIVF 818 Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 SLAAIK VG + I+E + + + +LEDF R LN++ LESL+ AGALD Sbjct: 819 SLAAIKNVGEGVSEKILEEYNENGEYKNLEDFVVRTKKYGLNKKALESLILAGALDGLPG 878 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R Q +S+D I YA K + N+F K + TL + + + E+ Sbjct: 879 NRRQKFESVDKIIDYANRKLKEDDIQQMNLFGEAKSSLG-VFTLPQVTEYSLDELLSKEK 937 Query: 957 RVLGFYFSGHPLDVYKPILR 976 LGFYFS HPLD Y+ +++ Sbjct: 938 EYLGFYFSAHPLDSYRRLIK 957 >gi|205374532|ref|ZP_03227328.1| DNA polymerase III DnaE [Bacillus coahuilensis m4-4] Length = 1115 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1034 (38%), Positives = 615/1034 (59%), Gaps = 55/1034 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQV S+YSLLE +S+ ++ K +D +A+TD N ++ + F Q+ AGIQP Sbjct: 2 SFVHLQVWSAYSLLESTISIEKLVQKAKSDGYTHLALTDKNVMYGVIPFYQECRKAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG DI D+ T+ +VLL T GY+ L+++ S + Q K Sbjct: 62 IIGVTADILHDDD------------TIHPLVLLAETERGYRNLMKISSVI----QTKPEG 105 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 I WL+ EGLI +T G G I+ + + A+K + ++ +F Y+++Q Sbjct: 106 AIPFKWLKGY-KEGLIAITPGEDGKIEDELTNGAVEAAKKTIYSYLSIFSSHNFYLSIQW 164 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + +S++ QL P++ ++ +L++E+ A + L+A+ +S+ DR + Sbjct: 165 QT---THIQSELKQLGKETSTPILCSHPVRYLTKEEAFAQECLLAIRDGKKLSEDDRTIL 221 Query: 249 TPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + Y K+ SEMV +FS L+NTV +A+RC + + +LP++ KE Sbjct: 222 PSNEYDFKSPSEMVELFSTEWGCLQNTVSVAKRCHIEIPLQQSLLPKYPLKEG----TSP 277 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L + GL+ R+ YH Y +RL +EL++I M+F YFLIV DF+++A Sbjct: 278 IDALSSLCKKGLKERVP-------YHHHTYVERLQYELSIIENMQFEDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++I GPGRGS AGS+ AY L ITD+DP+ LLFERFLNP+R+SMPD DIDF RR Sbjct: 331 REHDIVTGPGRGSAAGSLVAYVLHITDVDPIEHHLLFERFLNPERVSMPDIDIDFPDHRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI+YV++KYG VAQI+TFG+ KAALRDV R+ +++RL +++P P + Sbjct: 391 DEVIQYVKDKYGELHVAQIVTFGTYGVKAALRDVARSFGFNTKEMERLSRMVPTTPGTTL 450 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++A + + +E +L + + LEGL RH STHAAG+VI +RPL +VP+ + Sbjct: 451 -VKAYRESKQLQEFIKESDLHQKLYKTAVLLEGLPRHTSTHAAGVVISERPLVDIVPI-Q 508 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDLSLIPFD 604 + + +TQ++M +E+ GL+K DFLGL+ LT+L+ K+++ ++ K+D I + Sbjct: 509 TGSNGIYLTQYSMTVLEEIGLLKMDFLGLRNLTILEQLVKTINRYSKEEFKLDQ--IDQN 566 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL+ T GIFQLES GMR+ L ++P EDI+A+ +LYRPGP++NI Y R Sbjct: 567 DSKTFELLSKGDTSGIFQLESEGMRKVLLSLKPSGFEDIVAVNALYRPGPMENIPDYVER 626 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G++ I SIHP ID +L T+GVI+YQEQ+MQIA +++G+SL EAD+LRRA+ KK + Sbjct: 627 KHGRKPIPSIHPDIDSILNVTKGVIVYQEQIMQIASVMAGFSLGEADLLRRAVSKKKADV 686 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + K++E F+ GA+ G +A +++L+ KFA+YGFN+SHA AY++ISYQ A++K H+P Sbjct: 687 LQKEREHFVQGATAKGYPVKLANEVYDLIVKFANYGFNRSHAVAYSMISYQLAYIKAHFP 746 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 FLAA +T + N +K+ + +AR+ NI + PS+N F N I YSL AI+G Sbjct: 747 SYFLAALLTSVIGNEDKVAAYIHEARKKNIDLFSPSINRSYYSFFATKNGITYSLGAIRG 806 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG + I+ A +KPF+ L DFC RVDSK +NR+ +ESL++AGALD F R LL S Sbjct: 807 VGVKAYQEILRARNEKPFEDLMDFCLRVDSKVVNRKTIESLIYAGALDEFKKDRAVLLAS 866 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE----NSSVRFENEQRVLG 960 LD ++ ++ ++ +F E D + L VE + ++ + E+ VLG Sbjct: 867 LDAALDHSDLLKPKGSDF--ALFDEE-----DMLLLRPKYVEIEPMPTDIKLQYEREVLG 919 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPL ++ + R++G ++ + ++I + V + +T+KG + +V Sbjct: 920 IYLSDHPLRQFEGLQRRIGALPLSDTPIGKKEHDHIVYLSEV---KPIRTKKGDVMAFVK 976 Query: 1020 FSEPAKEYEANFFP 1033 ++ E + FP Sbjct: 977 LTDQTGEVDGVVFP 990 >gi|226953025|ref|ZP_03823489.1| DNA polymerase III, alpha chain [Acinetobacter sp. ATCC 27244] gi|226836232|gb|EEH68615.1| DNA polymerase III, alpha chain [Acinetobacter sp. ATCC 27244] Length = 1187 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1013 (38%), Positives = 590/1013 (58%), Gaps = 48/1013 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ D+ PA+A+TD +NL +A++F + GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLVKAAINDEMPALALTDLSNLHAAVKFYEACLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ ++ LL + G++ L E+VSR ++ +G+Q Sbjct: 63 LGSVIRLNDAEH---------------RATLLAMSNTGWRNLTEIVSRGFI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E +E LI+L G S + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 106 PCVQKEWVLE-QSEDLIILLGQHSD-VGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTR 163 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + + V+LA +++ +VA N+ F+ ++D+ AH+ + +A V+ RP+ Sbjct: 164 TERAGEEDFIQEAVKLAAKYQIGVVAHNDIHFIEKDDFYAHEARVCIADGYVLGDDKRPK 223 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P+ Y K +M +FSD+P A+ENT +A+RC+ LQ+ LP F + I Sbjct: 224 NYSPEQYFKTGQQMSELFSDIPSAIENTYYVAQRCNVALQLGTYFLPDFPIPDGYTIDTY 283 Query: 307 EENELRNKAVAGLEVRLAQ--GAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIV 360 E+ R GLE RL + +D Y +R+ +E+++I +M F GYFLIV Sbjct: 284 FEHLSRQ----GLEERLNHLYPISERDEDWEDIRKPYDERIKYEVDIILKMGFPGYFLIV 339 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+ Sbjct: 340 MDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDV 399 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC RD VI YV YG + V+QI TFG++ AK A+RDV R L Y DR+ K++P Sbjct: 400 DFCIAGRDRVIEYVAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVP 459 Query: 481 NDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIG 535 P AI + + ++ ++P D + E++ KLEG+ R+ HA G+VI Sbjct: 460 TKPLGVDLATAIDMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIA 519 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + +R Sbjct: 520 PGKITDYSAVLCDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKS 579 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 ++++ +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRP Sbjct: 580 ETPLEIANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRP 639 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+D I + +R +G E +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD+ Sbjct: 640 GPMDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADL 698 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM KQ++ FI GA++ I + A +IF+ + KFA YGFNKSHAAAYA++ Sbjct: 699 LRRAMGKKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALV 758 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +Y TAW+K HYP EF+AA ++ EM N + I D R ++++PPSVN F D Sbjct: 759 AYHTAWLKAHYPSEFMAAVLSSEMQNTDSIVFLIDDCRNNKLEVLPPSVNMSLYHFHASD 818 Query: 833 NR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 R I Y L AIKGVG + ++++ + P+ L DFC R+D KK+N+R LE+L+ AGA Sbjct: 819 ERTIVYGLGAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGA 878 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949 LDC G R L+ L + A+ NR ++F E+ ++ +S E Sbjct: 879 LDCLGIERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPAKPVKPWSDE--- 935 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 VR + E+ LG Y +GHP+DVY+ L+ E T RG A +VV Sbjct: 936 VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNELTPTRRGVTTVFAGLVV 988 >gi|294650615|ref|ZP_06727970.1| DNA-directed DNA polymerase III alpha subunit [Acinetobacter haemolyticus ATCC 19194] gi|292823498|gb|EFF82346.1| DNA-directed DNA polymerase III alpha subunit [Acinetobacter haemolyticus ATCC 19194] Length = 1187 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1013 (38%), Positives = 590/1013 (58%), Gaps = 48/1013 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ D+ PA+A+TD +NL +A++F + GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLVKAAINDEMPALALTDLSNLHAAVKFYEACLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ ++ LL + G++ L E+VSR ++ +G+Q Sbjct: 63 LGSVIRLNDAEH---------------RATLLAMSNTGWRNLTEIVSRGFI--EGQQLSI 105 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 C+ W+ E +E LI+L G S + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 106 PCVQKEWVLE-QSEDLIILLGQHSD-VGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTR 163 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + + V+LA +++ +VA N+ F+ ++D+ AH+ + +A V+ RP+ Sbjct: 164 TERAGEEDFIQEAVKLAAKYQIGVVAHNDIHFIEKDDFYAHEARVCIADGYVLGDDKRPK 223 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P+ Y K +M +FSD+P A+ENT +A+RC+ LQ+ LP F + I Sbjct: 224 NYSPEQYFKTGQQMSELFSDIPSAIENTYYVAQRCNVALQLGTYFLPDFPIPDGYTIDTY 283 Query: 307 EENELRNKAVAGLEVRLAQ--GAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIV 360 E+ R GLE RL + +D Y +R+ +E+++I +M F GYFLIV Sbjct: 284 FEHLSRQ----GLEERLNHLYPISERDEDWEDIRKPYDERIKYEVDIILKMGFPGYFLIV 339 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+ Sbjct: 340 MDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDV 399 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC RD VI YV YG + V+QI TFG++ AK A+RDV R L Y DR+ K++P Sbjct: 400 DFCIAGRDRVIEYVAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVP 459 Query: 481 NDPAHPVSLQAIADDSRFRE--ARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIG 535 P AI + + ++ ++P D + E++ KLEG+ R+ HA G+VI Sbjct: 460 TKPLGVDLATAIDMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIA 519 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--- 592 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + +R Sbjct: 520 PGKITDYSAVLCDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKS 579 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 ++++ +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRP Sbjct: 580 ETPLEIANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRP 639 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+D I + +R +G E +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD+ Sbjct: 640 GPMDLIPDFIHRMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADL 698 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM KQ++ FI GA++ I + A +IF+ + KFA YGFNKSHAAAYA++ Sbjct: 699 LRRAMGKKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALV 758 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +Y TAW+K HYP EF+AA ++ EM N + I D R ++++PPSVN F D Sbjct: 759 AYHTAWLKAHYPSEFMAAVLSSEMQNTDSIVFLIDDCRNNKLEVLPPSVNMSLYHFHASD 818 Query: 833 NR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 R I Y L AIKGVG + ++++ + P+ L DFC R+D KK+N+R LE+L+ AGA Sbjct: 819 ERTIVYGLGAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGA 878 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949 LDC G R L+ L + A+ NR ++F E+ ++ +S E Sbjct: 879 LDCLGIERSSLMTQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPAKPVKPWSDE--- 935 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 VR + E+ LG Y +GHP+DVY+ L+ E T RG A +VV Sbjct: 936 VRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNELTPTRRGVTTVFAGLVV 988 >gi|216263511|ref|ZP_03435506.1| DNA polymerase III subunit alpha [Borrelia afzelii ACA-1] gi|215980355|gb|EEC21176.1| DNA polymerase III subunit alpha [Borrelia afzelii ACA-1] Length = 1161 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1019 (39%), Positives = 613/1019 (60%), Gaps = 33/1019 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A AGI+PI Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + K + GK + ++LL GY+ L++L S YL + Sbjct: 81 IGIEAYMAKTSKFLKKHDDLGKMSY----HLILLAKNELGYKNLLKLTSISYL-EGFYYR 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ LQR Sbjct: 136 PRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQR 194 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ ++V+ + +PL N+S +++ ED A D+++ + S ++R + Sbjct: 195 HGIKDQDIVNERLVEYSKELGVPLTVANDSHYVNREDASAQDIIVCIGTGAKKSDENRLK 254 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRF-IEKECDDIQ 304 + T + Y+K++ EM +F+DLPEALENTV IA +C F + PILP + I E + + Sbjct: 255 METNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEFNTLG 314 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L + GL+ R + R +EL+VI RM F GYFLIV DFI Sbjct: 315 EY----LEYLTLEGLKFRYKT-------LTSKIKDRAFYELSVIIRMGFEGYFLIVWDFI 363 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDIDFC Sbjct: 364 KFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDIDFCF 423 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + RDE+I+YV NKYG ++VAQIITFG+L+AKA ++DV R L +P+++ + L K IP+ P Sbjct: 424 EGRDEIIKYVTNKYGEDKVAQIITFGTLKAKAVVKDVARVLDIPFAESNELTKFIPDGPK 483 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ VP Sbjct: 484 --VSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYVP 541 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IP 602 +Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + R V D + IP Sbjct: 542 LYKDYKQGSISTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLI--RSVNPDFKIKNIP 599 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 600 DNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQFI 659 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK + Sbjct: 660 AAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKKE 719 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +EM++ K F+ GA + G K IA IFELL F+ YGFNKSHA AY++I+YQTA++K + Sbjct: 720 DEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAVAYSLIAYQTAYLKAN 779 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L I Sbjct: 780 YPEYFMAANLTNEINNNDKLSYYIEESKAMGINVLKPDINRSFREFRVTDSGISYGLNGI 839 Query: 843 KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K +G I+ E + + S EDF RVD K +N++ LES + +G D +R L Sbjct: 840 KNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLNQNRKTL 899 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 ++LD + + + N+ ++F + + + + S E+ +L Sbjct: 900 FENLDRLIEVVSEDKNNKRLGQNSLFDVLESQESIQQSFNYQVLKEYSYSELLGFEKELL 959 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT-RKGSRIGW 1017 GFY SGHPLD YK + + +A + + ++ + ++ S + +T R SR+ + Sbjct: 960 GFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSIVQFSGILNSVKIIQTKRNNSRMAF 1018 >gi|300853524|ref|YP_003778508.1| DNA polymerase III subunit alpha [Clostridium ljungdahlii DSM 13528] gi|300433639|gb|ADK13406.1| DNA polymerase III, alpha subunit [Clostridium ljungdahlii DSM 13528] Length = 1158 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/995 (38%), Positives = 586/995 (58%), Gaps = 72/995 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V L H+ YSLL+ + + ++ + ++AITD ++ +EF ++A A GI+PI Sbjct: 8 WVSLHQHTEYSLLDSSAKIPELIARAKELGMDSMAITDHGVMYGCVEFYKEARAQGIKPI 67 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129 IGC++ + D N GK +VLLV EGYQ L+++VS + +G Sbjct: 68 IGCEIYVSQGDMTIKQNNGKN---ENYHLVLLVKNEEGYQNLMKIVSTASI--KGFYYKP 122 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ ++L+ +EGLI L+ SG + + AE+ L +K F D Y+ +Q H Sbjct: 123 RVDHNYLKN-HSEGLIALSACMSGEVQSNILKGNIDKAEETALFYKSAFKDGFYLEIQYH 181 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + Q++ ++ +PLVATN+ ++ +EDY AHD+L+ + V +++R R Sbjct: 182 GIEAQLKINEQLISMSKKLNIPLVATNDVHYIKKEDYRAHDILLCIQTGKTVDEENRMRY 241 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FS++PE+LENT++IA +C+F + H LP+F E D + Sbjct: 242 PSDEFYLKSPDEMYDMFSNVPESLENTIKIADQCNFDYEFHKSKLPKFPLPEDTDPYEYM 301 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 ++ L + K Y+ + + RL++EL +I +M + YFLIV DFI+ Sbjct: 302 KD-------------LCYKGLYKRYNDVTDELKSRLEYELGIIKKMGYVDYFLIVWDFIR 348 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+KN I GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+R+SMPD D DFC + Sbjct: 349 FARKNGIMTGPGRGSGAGSIVAYTLEITKIDPIKYKLIFERFLNPERVSMPDIDSDFCYE 408 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG + V+QIITFG++ AK +RDVGRA+ Y +VDR+ K+IP+ P Sbjct: 409 RRGEVIDYVVEKYGKDSVSQIITFGTMAAKMCIRDVGRAMNYSYGEVDRIAKMIPSIPNI 468 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + F+EA ++ L++I++ LEGL RH STHAAG+VI PL VP+ Sbjct: 469 TID-KALDMNPEFKEAYDSESRTKELIDIARALEGLPRHTSTHAAGVVIASEPLVNYVPL 527 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 ++ D VTQF M +E+ GL+K DFLGL+TLT+L+ +++ + + +G+++DL I +D Sbjct: 528 QKN--EDNIVTQFTMNTLEELGLLKMDFLGLRTLTVLRDAVEMIKEDKGIEIDLDTIDYD 585 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D Y+++ T+G+FQLES G ++ ++PD +EDIIA +SLYRPGP+ I Y Sbjct: 586 DKAVYNMIGEGKTVGVFQLESPGFSSFMKELKPDSLEDIIAGISLYRPGPMSEIPKYIKN 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN E I + P ++ +L T G ++YQEQVMQI + L+GYS+ +D++RRAM KK Sbjct: 646 KNNPEGIEYVTPQLEHILSVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHV 705 Query: 725 MDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 M++++ F + G +NGIS+ IA +IF+ + FA Y FNKSHAAAYAV+ Sbjct: 706 MEEERHNFVYGIVDEKGEIQVPGCVRNGISEKIANDIFDSMMDFASYAFNKSHAAAYAVV 765 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +++TA++ +YP EF AA + + EK+ + + A+ I+IMPPS+N C F V D Sbjct: 766 AFRTAYLMYYYPTEFTAAMLNSVKGDSEKVAYYIRFAKSIGIEIMPPSINESCTKFTVED 825 Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I + L+AIK VG I+ + S F + DFC+ +D +N+RV+ESL+ AGA Sbjct: 826 GNIRFGLSAIKNVGENVIDSIVRSRSKHGKFKDIVDFCNSIDLDSINKRVVESLIKAGAF 885 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSSV 950 DCFG R QL+ + + +++ K +++L FS +E+SSV Sbjct: 886 DCFGVLRSQLIAVHEKVI--------------DSVINSRKKNIEGQVSL--FSQIEDSSV 929 Query: 951 RFEN--------------EQRVLGFYFSGHPLDVY 971 R + E+ + G Y SGHPLD Y Sbjct: 930 RIKYPSIEEFKKLDMLAMEKEMTGLYLSGHPLDEY 964 >gi|323702832|ref|ZP_08114491.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] gi|323532220|gb|EGB22100.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] Length = 1189 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1021 (39%), Positives = 605/1021 (59%), Gaps = 54/1021 (5%) Query: 43 AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI---DMQDNL-KMTNQGKTPFPTVPS 98 A+A+TD +F A+EF + GI+PI+GC++ + M D + K+ +Q + Sbjct: 21 ALALTDHGCMFGAVEFYKTCHQEGIKPILGCEVYVAPRSMTDRIPKLDDQ-------LYH 73 Query: 99 IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158 +VLL EGY+ L++LVS Y + R+ L +GLI L+G +G + + Sbjct: 74 LVLLAENQEGYKNLLKLVSLGYT-EGFYYKPRVDKQTLARY-HKGLIALSGCVAGEVAQR 131 Query: 159 FFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATN 215 SQ A + + +FG + ++ LQ H G+ + +++++A +LPLVATN Sbjct: 132 ILSGQSQQARQAARDYVDIFGPNNYFLELQDH-GFQEQKTVNRELLRIAGDMQLPLVATN 190 Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENT 274 + +L E DVL+ + V+ R + + + YLKN EM +F ++PEAL NT Sbjct: 191 DVHYLKREHAYIQDVLLCIQTGKSVNTPGRMKFASQEMYLKNPHEMNLVFGEIPEALTNT 250 Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 V IA RC L+ LP F E + LR AG R G+ + Sbjct: 251 VRIAERCHVELEFGKLHLPYFTVPEG----YTPASYLRELCEAGAVKRY-------GHCS 299 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++RLD+EL VI +M + YFLIV DFI++A++ I VGPGRGS AGS+ +Y L IT Sbjct: 300 GPVKERLDYELKVIGQMGYDEYFLIVWDFIKFARERGIGVGPGRGSAAGSIVSYVLGITS 359 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 +DPLR+ LLFERFLNP+R+SMPD D+DF +RR EVI Y+ KYG +RVAQIITFG++ A Sbjct: 360 LDPLRYGLLFERFLNPERISMPDIDVDFDFERRGEVIEYIVQKYGTDRVAQIITFGTMAA 419 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514 +AA+RDVGRAL M Y +VDR+ KL+P + ++ +A+A + A DP V RL++ Sbjct: 420 RAAIRDVGRALDMSYGEVDRVAKLVPGELNMTIA-KALASSPELKAAYDHDPEVKRLVDT 478 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + +LEG+ RHASTHAAG+VI PL + +P+++ L TQF M +E+ GL+K D L Sbjct: 479 AAELEGMPRHASTHAAGVVISRDPLVEYLPLHK-AADGLVTTQFPMGTVEELGLLKMDLL 537 Query: 575 GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ ++++ + Q RG +D++ I DD TY++L +G+FQLESSGMR L+ Sbjct: 538 GLRNLTVINEAVNLIKQTRGRALDMNAIALDDQTTYNMLARGEGVGVFQLESSGMRNILK 597 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 ++P EDI+ALV+LYRPGP+ + +V + RK+G K HP ++P+LKET GVI+Y Sbjct: 598 ELKPSAFEDIVALVALYRPGPLGSGMVEDFIQRKHGLTKPDYFHPDLEPILKETYGVILY 657 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF----------------ISG 735 QEQVM IA++++GY+L +AD LR+AMGKKI E M ++ F I G Sbjct: 658 QEQVMMIARVMAGYTLGQADALRKAMGKKIPEIMAMHRQWFIHGTTVDEKGKPLKSPIPG 717 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A G +A +F+L+ FA YGFNKSH+AAYA++SYQTA++K +Y VE++AA +T Sbjct: 718 AVARGYDVALAEKMFDLMEYFAGYGFNKSHSAAYALVSYQTAYLKANYGVEYMAALLTSV 777 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855 DN +K+ + ++ R+ IQ++PP +N +F V + I + LAA+K VG + I+ Sbjct: 778 RDNTDKVVIYIEECRRMGIQVLPPDINQSRENFTVVNGAIRFGLAAVKNVGLGAVQEIIR 837 Query: 856 A-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914 A D F S DFCSR+D++ +NRRVLESL+ AGALD FG+ R QLL+ LD+ + A Sbjct: 838 AREKDGDFTSFTDFCSRLDTRVVNRRVLESLIKAGALDQFGH-RAQLLKGLDDGLELAAR 896 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYK 972 V+++R ++F + + + V+ ++R + E+ LG Y SGHPL + Sbjct: 897 VQRDRNQGQVSLFDLMTDKAEEAMEIPLPDVQPLTIREQLQLEKETLGLYISGHPLAEFN 956 Query: 973 PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + + E + + G + + + +V+ ++ +RKG + + T + E F Sbjct: 957 WLMEALEARRIVELLEAMDGQPVLVVSNIVTIKRITSRKGDLMAFATVEDLTGNCEVVIF 1016 Query: 1033 P 1033 P Sbjct: 1017 P 1017 >gi|19704718|ref|NP_604280.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19715034|gb|AAL95579.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 1133 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1027 (38%), Positives = 610/1027 (59%), Gaps = 69/1027 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSL EG S+++ L K ++A+TD N+F A+EF QKA GI+P Sbjct: 4 NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKKMGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L I +D + S+ LL GY+ L++L S +Y ++ ++ + Sbjct: 64 IIGLELPITNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFG-DRLYVNLQ 187 ++ L+E ++ LI L+ +G I +A NSS +++ + ++F + Y+ +Q Sbjct: 112 KLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENFYLEIQ 170 Query: 188 RHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + E++++ LA H+L LVATNN ++ + YE D+++ + V + Sbjct: 171 A----NELSETKIINDKFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKE 226 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K+R R ++ + YLK++ EM + +A+EN IA C+ + P + Sbjct: 227 KNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANYIASLCNIEITFGNLQFPYY----- 281 Query: 301 DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354 ++ E +G++ L I K Y +D RL++EL+VI +M +S Sbjct: 282 -EVPSE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYS 331 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYF++V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S Sbjct: 332 GYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 391 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+ Sbjct: 392 MPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDK 451 Query: 475 LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 L KL+ +H +L+ + ++ + D + ++++++ ++E RH STHAAGI+ Sbjct: 452 LAKLV----SHSQTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGIL 507 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592 I L + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + Sbjct: 508 ITKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNVQRTIDYIKKYK 567 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 + +DL IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRP Sbjct: 568 NIDIDLYKIPLDDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALYRP 627 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+ + +V + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EA Sbjct: 628 GPLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEA 687 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ AYA Sbjct: 688 DLLRRAMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYA 747 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +ISY TA+ K HYP + AA MT E+ I + DA++ I+I P++N+P F+V Sbjct: 748 MISYWTAYFKVHYPAYYYAAVMTSEISETGDIAYYFNDAKEHGIRIYSPNINSPSAYFEV 807 Query: 831 GDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 ++ I YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +G Sbjct: 808 KNDGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSG 867 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVE 946 ALD +R + S+D + Y+ K + N+F T DK L E F+++ Sbjct: 868 ALDEIKGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLD 926 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE------SVATIRGNNIRLAAM 1000 + E+ LGFY S HPLD YK IL IK E V G I L + Sbjct: 927 E---KLNKEKEFLGFYLSSHPLDKYKDILTTFFIKKLSEFDLEGNQVIKTFGTIINLKKI 983 Query: 1001 VVSKQQK 1007 + K+++ Sbjct: 984 ITKKEEQ 990 >gi|33861502|ref|NP_893063.1| DNA polymerase III subunit alpha [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634079|emb|CAE19404.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 1165 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1052 (37%), Positives = 619/1052 (58%), Gaps = 46/1052 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L HS YSLL+GA ++ I+D+ +IA+TD ++ L+ +K + GI+PI Sbjct: 3 FVPLHNHSDYSLLDGASQVSKIVDRACELGMDSIALTDHGVMYGVLDLVKKCKSKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG ++ I + P P +V+L GY+ L++L + +L + Sbjct: 63 IGNEMYI-------INGSIDDPQPKKEKRYHLVVLAKNHTGYKNLVKLTTISHLNGMRGR 115 Query: 128 SV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + R C+ L E +GLI+ T G I +A VAE + +K++FGD Y+ Sbjct: 116 GIFSRPCIDKSLLEKYNDGLIISTACLGGEIPQAILKGRIDVAENTAVWYKRIFGDDFYL 175 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H DR +++++ H++ ++ATN++ ++S D EAHD L+ V ++S + Sbjct: 176 EIQDHGSIEDRIVNVELIRIGKEHQIKVIATNDAHYISNMDVEAHDALLCVLTGKLISDE 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297 R R T Y+K+ EM+ +F+D + EA+ NTVE++++ +P+F Sbjct: 236 KRLRYTGTEYIKSEDEMLRLFNDHIDKESIKEAINNTVEVSQKIEEFELFGTYRMPKFPL 295 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 KE + + + L GL RL + + + + Y++RL EL +I M F YF Sbjct: 296 KE----ETDSLSFLTKITKQGLLSRLNKNNLDE--IDEIYKKRLTSELKIIDDMGFPDYF 349 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+V D+I++A+ ++IPVGPGRGS AGS+ AYAL IT+IDP++ LLFERFLNP R SMPD Sbjct: 350 LVVWDYIKFARDSSIPVGPGRGSAAGSLVAYALQITNIDPVKHGLLFERFLNPARKSMPD 409 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D DFC DRR+EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+L K Sbjct: 410 IDTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGESDKLAK 469 Query: 478 LIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 LIP P L + D FR+ L D V + ++++ ++EG + HAAG+V Sbjct: 470 LIPVVRGKPYKLNEMIDKKSPSPEFRDKYLKDIKVKKWIDLALRIEGTNKTYGVHAAGVV 529 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQR 592 I PL LVP+ R+ + +TQ++M IE GL+K DFLGLK LT++ K++ + + Sbjct: 530 IASDPLDMLVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLIESST 588 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 G K+++ +P D++T+ L+ G+FQLESSGM+Q ++ +P+ +EDI ++++LYRP Sbjct: 589 GQKINIDKLPPKDNKTFDLIGRGDLEGVFQLESSGMKQVVKDFKPNSLEDISSILALYRP 648 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+D ++ + NRKNG EKI HP I+ +L ET G+++YQEQ+M+IAQ L+GYSL +A Sbjct: 649 GPLDAGLIPKFINRKNGSEKIDFPHPFIESILTETYGIMVYQEQIMKIAQDLAGYSLGDA 708 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM K + FI G+ K G+ K IA ++F+ + FA+Y FNKSH+ AY Sbjct: 709 DLLRRAMGKKKVSEMVKHRNIFIEGSCKKGVDKKIANDLFDQMVLFAEYCFNKSHSTAYG 768 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++YQTA++K HYPV ++A+ +++ + +K++++ + I+++ PS+N +DF + Sbjct: 769 AVTYQTAFLKAHYPVAYMASLLSVNAGSSDKMQRYISNCYSMGIEVISPSINLSGIDFTI 828 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 ++I + L+AIK +G + R+I++ F S D C R+ S LN+R LESL+ G Sbjct: 829 KKDQILFGLSAIKNLGDSAIRNIIDNRNKLGVFKSFSDLCDRLPSNILNKRNLESLIHCG 888 Query: 890 ALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VE 946 ALD F +R QL L+ + ++A ++R + N+F + + +L + S VE Sbjct: 889 ALDEFSENNNRAQLFSDLEYVMEWASSRNRDRISGQGNLFDSISKNDTKEFSLSQGSKVE 948 Query: 947 NSSV--RFENEQRVLGFYFSGHPLD-VYKP--ILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + S+ + + E+++LGFY S HPL + KP ++ + I E S + + L M+ Sbjct: 949 DYSLIEKLKLEKQLLGFYLSDHPLKHLAKPAKLVSPISISQLENSHDRTK---VSLVGMI 1005 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG R+ V + + EA FP Sbjct: 1006 PELKQITTRKGDRMAIVQLEDLSGSCEAIVFP 1037 >gi|113955565|ref|YP_730835.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9311] gi|113882916|gb|ABI47874.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9311] Length = 1174 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1068 (38%), Positives = 611/1068 (57%), Gaps = 68/1068 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++ + PA+A+TD ++ A+E + AGI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPQMVGRAKELGMPALALTDHGVMYGAVELLKLCKGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P +V+L A GY+ L++L S +L Sbjct: 62 IIGNEMYV-------INGSIDDPQPKKERRYHLVVLAKNATGYRNLVKLTSISHLRGMRG 114 Query: 127 QSV--RICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + + R C+ L++ G EGLI+ T G I +A + VA L +++ FGD Sbjct: 115 RGIFSRACVDKQLLKQYG-EGLIVATACLGGEIPQAIMRDRPDVARDVALWYQQTFGDDF 173 Query: 183 YVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q H DR ++V++A +PL+ATN++ +L+ D EAHD L+ V ++S Sbjct: 174 YLEIQDHGSPEDRIVNVEIVRIAKELGIPLIATNDAHYLTRNDVEAHDALLCVLTGKLIS 233 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRF 295 R R T YLK+ EM +F D + EA+ NTV++A + + +PRF Sbjct: 234 DVKRLRYTGTEYLKSEEEMSRLFVDHLEPDVVAEAISNTVQVADKVEDYDILGRYQMPRF 293 Query: 296 IEKE----CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 E +++ E LRN+ LE+ ++ AI +Y RL EL ++ +M Sbjct: 294 PIPEPHTPVSYLREVTEQGLRNR----LEID-SETAIDP-----NYGDRLSHELKIMEQM 343 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFL+V D+I++A++ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+ Sbjct: 344 GFPTYFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPE 403 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R SMPD D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY Sbjct: 404 RKSMPDIDTDFCIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGD 463 Query: 472 VDRLCKLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 DRL KLIP P L A+ + + FRE DP V R ++++ ++EG + Sbjct: 464 ADRLAKLIPVVRGKPAKLAAMIGEESPNPEFREKYKKDPVVKRWVDMAMRIEGTNKTYGV 523 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAG+VI PL +LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ Sbjct: 524 HAAGVVIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLE 582 Query: 588 FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 +A G KVD +P +D ETY LL GIFQLES+GMRQ + ++P +EDI ++ Sbjct: 583 LVAATIGEKVDPDKLPLEDPETYALLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSI 642 Query: 647 VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++LYRPGP+D ++ + NRK+G+E I H I+P+L+ET G+++YQEQ+M+IAQ ++G Sbjct: 643 LALYRPGPLDAGLIPKFINRKHGRETIDFAHHSIEPILQETYGIMVYQEQIMKIAQDMAG 702 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL EAD+LRRAMGKK EM K + F+ GAS G+ K +A +F+ + FA+Y FNKS Sbjct: 703 YSLGEADLLRRAMGKKKVSEMQKHRGIFVQGASDRGVDKKVADELFDQMVLFAEYCFNKS 762 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+ AY ++YQTA++K HYPV ++AA +T+ +K++++ + I++MPP +N Sbjct: 763 HSTAYGAVTYQTAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDINAS 822 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883 +DF +RI + L+A++ +G R ++ + ++ F SL D C R+ S LNRR +E Sbjct: 823 GIDFTPKGDRILFGLSAVRNLGDGAIRAVIGSRESEGAFQSLADLCDRLPSAVLNRRSME 882 Query: 884 SLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----------AHEK 931 SL+ GA+D +R QL+ LD + +A K+R + N+F A + Sbjct: 883 SLIHCGAMDALEPEANRAQLMADLDLLLDWATSRAKDRASGQGNLFDLMAAASSDGAEDA 942 Query: 932 GT---FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEE 985 GT + K K +R E + ++GFY S HPL P +L +G+ EE Sbjct: 943 GTDLSLAPKAPPVKDYHPTEKLRLEKD--LVGFYLSDHPLKQLTPPAKLLAPIGLGSLEE 1000 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + I AMV +Q TRKG R+ +T + EA FP Sbjct: 1001 QADKAKVSAI---AMVSEMRQVTTRKGDRMAVLTLEDLTGSCEAVVFP 1045 >gi|71065735|ref|YP_264462.1| DNA polymerase III, alpha subunit [Psychrobacter arcticus 273-4] gi|71038720|gb|AAZ19028.1| DNA polymerase III, alpha subunit [Psychrobacter arcticus 273-4] Length = 1247 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1013 (38%), Positives = 600/1013 (59%), Gaps = 72/1013 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +HS YS+ + + + ++ AAD Q A+A+TD +NL++ ++F + AGI+P Sbjct: 2 AFVHLGIHSEYSITDSIVRIKPLVKAAAADNQRALALTDLSNLYATVKFYRACLGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS------RMYLLD 123 IIG ++ ++ +D + LL EGYQ + +VS R ++ Sbjct: 62 IIGSEVIMENEDT---------------RLTLLAMDNEGYQNITRIVSLGFTEGRADPVN 106 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G ++ S + E G +++ T S + +A + + A++ + ++ F DRLY Sbjct: 107 HGTPVIK--RSHILEHGAGVIVLFTEKSD--VGQALVGSMPEKADELITEWQASFDDRLY 162 Query: 184 VNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++R G D + ++ + A H +P++A N+ FL ++D++AH+ + +A S V++ Sbjct: 163 FAIKRTNRTGEDAFIKAAIHSGA-KHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLA 221 Query: 242 QKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++RP+ D YLK +++M +F+D+P+ ++NT+ +A RC+ L + +LP F E Sbjct: 222 DQNRPQTYSDAQYLKTQAQMQQLFADIPQVIDNTLRLATRCNVTLTLGINVLPEFPVPEG 281 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYRQR----LDFELNVIARMKFS 354 + E+ R ++ GLE RL + A+ H D RQR L++EL VI M F Sbjct: 282 E----TTESFFRLESQRGLENRLDKLFPVDARSDHWSDIRQRYDERLEYELKVILSMGFP 337 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+S Sbjct: 338 GYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVS 397 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFC + RD VI YV YG E V+QIITFG++ AKA +RDV RA Y + Sbjct: 398 MPDFDIDFCIEGRDRVIDYVAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASK 457 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD-----RLLEISQKLEGLYRHASTHA 529 + KLIP P +S QA+ + + ++ ++D + E++ KLEG+ R+ HA Sbjct: 458 MSKLIPKTPGITLS-QALEQEPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHA 516 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 G++I ++ +Y D V+QF+ +E GL+KFDFLGL+ LT++ +++ + Sbjct: 517 GGVLIAPHKITDFSAIYCDDEGHR-VSQFDKDDVEAVGLVKFDFLGLRNLTVISAAVENI 575 Query: 590 AQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 +R K + L +P DD + Y LL T +FQLES GM++ L +QP IED+I Sbjct: 576 NKRRAKEGKEALVLEDLPLDDAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVI 635 Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 A+ +LYRPGP+D +V Y +RK+G+E+++ HP ++P+L+ T GVI+YQEQVMQI+Q++ Sbjct: 636 AMCALYRPGPLDAGMVEMYIDRKHGREEVIYDHPNLEPILENTNGVIVYQEQVMQISQVM 695 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GYSL AD+LRRAMGKK EEM KQ++ F++GA+ GI + + +F+L+ KFA YGFN Sbjct: 696 AGYSLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFN 755 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821 +SH+AAY V++YQTA++K +YP EF+AA +T +M+N + + F D R+ F + ++ PSV Sbjct: 756 RSHSAAYGVLAYQTAYLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFALTVVNPSV 815 Query: 822 NTPCVDFKVGD--NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878 N F V D I Y L AIKGVG I+EA + PF L DFC RVD KK+N Sbjct: 816 NRSEWHF-VADTPTNIIYGLGAIKGVGEGAVESIVEARRREGPFKDLYDFCRRVDIKKVN 874 Query: 879 RRVLESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 +R LE L+ AG D F + R L+ L + + A+ +NR + Sbjct: 875 KRTLEGLINAGCFDDFAATLRPDLPSDEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMD 934 Query: 926 IFAHEKGTF-SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 +F G + + + + R + E+ LG Y +GHP+D Y+ L++ Sbjct: 935 LFGEMDGVVAAPPLVMTPELIWGDKHRLKAEKNTLGLYLTGHPIDEYRDELKR 987 >gi|304316261|ref|YP_003851406.1| DNA polymerase III subunit alpha [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777763|gb|ADL68322.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1144 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1060 (37%), Positives = 615/1060 (58%), Gaps = 67/1060 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + ++ + +IAITD ++ A+EF ++A + GI+PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKELVKRAKELDMDSIAITDHGVMYGAIEFYKEAKSQGIKPI 61 Query: 71 IGCQLDIDMQ---------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IGC++ + + DNL ++LL GY+ L+++VS+ + Sbjct: 62 IGCEIYVAPRSLYDKEYGIDNLNY------------HLILLCKNMTGYENLMKIVSKASI 109 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD- 180 D R+ +L+ +EGLI L+ G I + + A+ + + +FG Sbjct: 110 -DGFYYKPRVDHEYLKN-HSEGLIALSSCLGGEIPSYLLSDDYEKAKDTAILYNSIFGKG 167 Query: 181 RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQ H ++ + S++++L+ ++P+VATN+ +L +D+ AH+VL+ + Sbjct: 168 NFYLELQYHGLSEQEKVNSELIKLSKELDIPIVATNDVHYLDRDDHMAHEVLLCIQTGKN 227 Query: 240 VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + DR T + YLK+ EM +FS EALENT +IA C+ + + LP++ Sbjct: 228 MDDADRMSFPTDEFYLKSSDEMYEMFSYCREALENTEKIAEMCNLEFEFNKTKLPKY--- 284 Query: 299 ECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 D+ LR + G+ R A + ++ +RL++EL+VI +M + Y Sbjct: 285 ---DVPNGMTSAEYLRKLCIEGVNKRYANPS-------KEVIERLNYELSVIEKMGYVDY 334 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFI++A+ N I GPGRGS AGS+ AY L IT IDP++++LLFERFLNP+R+SMP Sbjct: 335 FLIVWDFIKFARDNGIMTGPGRGSAAGSLVAYCLGITKIDPIKYNLLFERFLNPERVSMP 394 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DFC +RR EVI YV KYG ++VAQIITFG++ A+AA+RDVGRAL PY++VD + Sbjct: 395 DIDSDFCYERRQEVIDYVVKKYGEDKVAQIITFGTMAARAAIRDVGRALNFPYAEVDAIA 454 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 K+IP +P + +AI + +E D + +L+EIS+ LEGL RHASTHAAG+VI Sbjct: 455 KMIPFEPGMTID-KAIGLNPELKEKYENDEKIRQLIEISRSLEGLPRHASTHAAGVVISS 513 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595 PL + VP+ ++ S VTQF M +E+ GL+K DFLGL+TLT+++ +L+ + + R + Sbjct: 514 EPLVKYVPLQKNEGS--IVTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLNIIKETRSID 571 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ I F+D E Y L++ T G+FQLESSGM+Q + ++P+ +EDIIA +SLYRPGP+ Sbjct: 572 VDIDNIDFEDKEVYALISKGDTEGVFQLESSGMKQFMTELKPEKLEDIIAGISLYRPGPM 631 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I Y KN E I HPL+ P+L T G ++YQEQVMQI + L+GYSL +D++RR Sbjct: 632 DQIPRYIENKNHPENIKYEHPLLKPILDVTYGCMVYQEQVMQIVRDLAGYSLGRSDLVRR 691 Query: 716 AMGKKIKEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNK 763 AM KK + M+++++ FI GA G+ + A +F+ + FA+Y FNK Sbjct: 692 AMAKKKMKVMEEERKNFIYGIKDESGNYVVPGAINKGVDEATANRLFDEMIDFANYAFNK 751 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SHAAAYAV+++QTA++K +YPVEF+AA + +DN +K+ + Q ++ IQ++PP +N Sbjct: 752 SHAAAYAVVAFQTAYLKRYYPVEFMAALLNSFVDNTDKVAFYVQVLKKMGIQVLPPDINE 811 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVL 882 F V + +I + LAA+K VG I+E + + S+ DF R+D +LN++ + Sbjct: 812 SYSHFSVVNGKIRFGLAAVKNVGLNATLEIVEDRKKNGRYISIVDFFERIDDMQLNKKAV 871 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 ESL+ AGA D FG R QLL ++I + ++F E +L Sbjct: 872 ESLIKAGAFDSFGVYRSQLLAVYEDIMDSIHKNRERNIKGQMSLFGSEIERNEVNYSLPD 931 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESV---ATIRGN 993 + + E+ +G Y SGHPLD ++ ++++ +K +++ + Sbjct: 932 IKEFSQDMILSMEKETMGLYISGHPLDEFQEDIQRVANCTTRDLKNGDDTFVKKSIFDNQ 991 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ LA ++ SK+ K T+ + + +V + + FP Sbjct: 992 DVVLAGIIESKKIKFTKNNNMMAFVNLEDLYGTIDVIVFP 1031 >gi|325267457|ref|ZP_08134113.1| DNA-directed DNA polymerase III alpha subunit [Kingella denitrificans ATCC 33394] gi|324981098|gb|EGC16754.1| DNA-directed DNA polymerase III alpha subunit [Kingella denitrificans ATCC 33394] Length = 1153 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1037 (39%), Positives = 586/1037 (56%), Gaps = 51/1037 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 ++ L+ HS +S+ +G + + + A PA+A+TD N F L+F + AG++PI Sbjct: 15 YIPLRAHSEFSITDGIIRVGELAKTAAEYGYPAVALTDLMNTFGLLKFYKACRKAGVKPI 74 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ I Q PF +LL+ GY RL EL++ + D+ + + Sbjct: 75 LGAEVRI------ANPKQPAQPF----RALLLIRNHSGYVRLGELLTLAHT-DEYRDLIA 123 Query: 131 ICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 L WL E GLI L+G G I +A + A + + F Y+ +QR Sbjct: 124 PQLQEEWLAEGDNSGLICLSGAQWGEIGQALLAGHEEQALQAAQKYAAWFEQAFYLEVQR 183 Query: 189 HRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + + V+LA +LP+VAT+ + FL ED+ AHD + +A V++ RP Sbjct: 184 LPDKPEWETVVAGSVRLAEQLDLPVVATHATQFLQREDFTAHDARVCIAGGWVLADDKRP 243 Query: 247 RVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 D Y + EM F+DLP AL N++EIA+RC+ L++ LP F E + Sbjct: 244 HDFSDSQYFAHPEEMAERFADLPAALANSLEIAKRCNVELELGKNFLPDFPTPEGMPLN- 302 Query: 306 EEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L A GL R L + +Y+ RLDFEL I +M F GYFLIV D Sbjct: 303 ---DYLCVLANQGLRERMEVLYPDEAERNAKMPEYQARLDFELQTIIQMGFPGYFLIVQD 359 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK+N PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDF Sbjct: 360 FINWAKQNGCPVGPGRGSGAGSLVAYALKITDLDPLKYALLFERFLNPERVSMPDFDIDF 419 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ R VI YV+ KYG E V+QI+TFG+L +KA +RDVGR LQ+P+ DRL KL+P + Sbjct: 420 CQANRGRVIEYVREKYGKEAVSQIVTFGTLSSKAVIRDVGRVLQLPFGLCDRLSKLVPVE 479 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P+ LQA + + + LL ++ KLE L R+ HA G++I ++ Sbjct: 480 ANKPLGLQAALEAEPEIRTLIEAEEAEELLTLALKLEDLTRNLGMHAGGVLIAPGRIADF 539 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601 +Y+ PV+ ++ +E+ GL+KFDFLGL+ LT+++ + F+ Q RG +D++ I Sbjct: 540 CGVYQADEHSSPVSMYDKGDVEEIGLVKFDFLGLRNLTIIEMAQQFIRQTRGEDIDVNRI 599 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 DD Y + T +FQ ESSGM+Q L+ E++IA VSLYRPGP++NI + Sbjct: 600 ALDDQAAYQIFRDANTTAVFQFESSGMKQMLKTAHTTKFEELIAFVSLYRPGPMENIPDF 659 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R G K +HPL++P+L+ T G+++YQEQVMQ AQ++ GYSL AD+LRRAMGKK Sbjct: 660 VARMKGA-KFEYMHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKK 718 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EEM K +E F GA+K I + A IF+ + KFA YGFNKSHAAAYA +SYQTAW+K Sbjct: 719 PEEMVKHREIFAEGAAKQNIDRAKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQTAWLKA 778 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFN-IQIMPPSVNTPCVDF-KVGDNRIYYS 838 HYP EF+AA+M+ E+DN +++K F DA R N I+ +PP +N F +N I Y+ Sbjct: 779 HYPAEFMAATMSSELDNTDQLKVFFDDAQRPVNGIRFLPPDINQSFYRFIPNANNEIRYA 838 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIKG G I+ E A+ F L DFC R+ K +NRR +E+L+ GA D + Sbjct: 839 LGAIKGTGEAVVNQIVAEREANGAFTGLLDFCERM-GKHINRRSVEALIRGGAFDALEPN 897 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------DKITLEKFSVENSSVR 951 R LL ++D +N KH++ A++ G F D I ++ + +V+ Sbjct: 898 RAMLLANVD-------LALQNAEQKHQS--ANQGGLFDMFDDVIDDIQMQPAPAWSEAVQ 948 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKT 1009 E+ +GFY SGHP Y+ +R++ S+A + + R+A S + T Sbjct: 949 LAEEKTAIGFYLSGHPFSPYREEVRRVA----PVSLAKLSEQDGTQRVAGFATSIRSIMT 1004 Query: 1010 RKGSRIGWVTFSEPAKE 1026 ++G + + + AK+ Sbjct: 1005 KRGKMLAIMLEDDEAKQ 1021 >gi|288575454|ref|ZP_06393727.1| DNA polymerase III, alpha subunit [Neisseria mucosa ATCC 25996] gi|288567673|gb|EFC89233.1| DNA polymerase III, alpha subunit [Neisseria mucosa ATCC 25996] Length = 1124 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1013 (39%), Positives = 580/1013 (57%), Gaps = 64/1013 (6%) Query: 42 PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101 PA+ I+D N F ++F + +AGI+P+ + I N PF +L Sbjct: 17 PALGISDLMNEFGLVKFYKACRSAGIKPVGAADVWIGN------PNAPDKPF----RAML 66 Query: 102 LVSTAEGYQRLIELVSRMYL-LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160 ++ GY RL EL++ Y+ D+ + WL+ GLI L+G G + Sbjct: 67 VIRNDAGYLRLSELLTTAYVGKDRNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLL 126 Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSL 218 + A L + F D Y+ LQR + S V+LA LP+VAT+ + Sbjct: 127 NGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQ 186 Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 F+S +D+ AH+ + +A V++ K RPR TP + M+ F+DLPEALENTVEI Sbjct: 187 FMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEI 246 Query: 278 ARRCSFILQVHAPILPRFIEKE---CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 A+RC+ + + LP F + DD + NE GL+ R+ Q + A Sbjct: 247 AKRCNIHITLGKNFLPLFPTPDGLSLDDYLVKLSNE-------GLQERMVQLYPDEAERA 299 Query: 335 Q---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391 + +Y++RLDFELN+I +MKF GYFLIV DFI WAK + PVGPGRGSGAGS+ AY+L Sbjct: 300 EKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLK 359 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 ITD+DPL+++LLFERFLNP+R+SMPDFD+DFCQ R VI YV+ KYG E V+QI+TFG+ Sbjct: 360 ITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGT 419 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDR 510 + +KA +RDVGR L++P++ D+L KLIP + P+ L A+ + + +E A+ D Sbjct: 420 MSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEAE-EADE 478 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 L+ +++KLE L R HA G++I +S P+Y+ S PV+ ++ +E GL+K Sbjct: 479 LITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVK 538 Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVK------VDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 FDFLGL+ LT+++ +AQ +K VD+ IP DD Y + T +FQ E Sbjct: 539 FDFLGLRNLTIIE-----MAQNNIKNTTGDIVDVGTIPLDDQLAYKIFRDANTTAVFQFE 593 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L+ E++IA VSLYRPGP+DNI + R G+E IHPL++ +L Sbjct: 594 STGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQE-FQYIHPLLEGILAP 652 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+++YQEQVMQ AQ++ GYSL AD+LRRAMGKK EEM K +E F GA+K GIS+ Sbjct: 653 TYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISRE 712 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 + IF + KFA YGFNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+DN +++K Sbjct: 713 KSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKH 772 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA-SADKPF 862 F D R I+ +PP +N F N +I Y+L AIKG G I+ A + F Sbjct: 773 FYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYALGAIKGTGEAAVESIIAARQSGGKF 832 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 L DFC RV + +NRR LE+L+ GA D +R LL ++D N K Sbjct: 833 TGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANID-------LAMNNADQK 885 Query: 923 HENIFAHEKGTFS------DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 N A++ G F + + L + + S + E+ V+GFY SGHP Y +R Sbjct: 886 AAN--ANQGGLFDMMEDAIEPVQLVDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVR 943 Query: 977 KMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 ++ + ++ +++RLA V + + ++G +I +V+ + + + E Sbjct: 944 QIA----PTKLGRLKPQDSVRLAGFVTAVRTMMGKRG-KIAFVSLEDLSGQIE 991 >gi|157165237|ref|YP_001467325.1| DNA polymerase III subunit alpha [Campylobacter concisus 13826] gi|112801857|gb|EAT99201.1| DNA polymerase III subunit alpha [Campylobacter concisus 13826] Length = 1203 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1059 (37%), Positives = 620/1059 (58%), Gaps = 63/1059 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ F HL +H+ YSLL+GA + + + A AITD N+F A++F +K Sbjct: 1 MSENSGFTHLHLHTEYSLLDGANKIEELAHTLHDRGDTAAAITDHGNMFGAIDFYKKMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+P+IG + + + L K F ++L+ GY+ L+ L S Y+ + Sbjct: 61 NGIKPLIGIEAYVHNGEQLD-DKSTKQRF----HLILIAKNETGYKNLMYLSSMSYI-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPI-------DRAFFFNSS--QVAEKRLLTFK 175 RI L+E +EGL+ + G + +R F + + A++ L +K Sbjct: 115 FYYYPRINKKILKE-HSEGLVCSSACLQGEVSWHLNLSERNVKFGAKGYERAKEVALEYK 173 Query: 176 KLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++FGD Y+ + RH D+ R + ++++A + ++ATN++ + +E AH+V M + Sbjct: 174 EIFGDDFYLEIMRHGIGDQRRIDDDILRIAKETGIKVIATNDTHYTFKERAAAHEVFMCI 233 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 A + + +R R + + ++K++ +M +F D+PE +ENT EI +C+ +++ P P Sbjct: 234 AMNKTLDDPNRLRHSVHEFFVKSKEQMNELFLDIPEVIENTQEIVDKCNLEIKLGNPTPP 293 Query: 294 RF-----IEKECDDIQKEEEN--ELRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQ 339 F KE + E EN +N AV GLE RL + + H ++YR+ Sbjct: 294 NFKFTLECAKERNLTLPEPENRYSFKNDAVFFEHECRKGLEERLK--FVPENLH-EEYRK 350 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RL+ E+++I +M F GY +IV DFI AK+ +PVGPGRGS AGS+ AY+L ITD+DP+ Sbjct: 351 RLEIEISIINKMNFPGYMMIVWDFINEAKRRGVPVGPGRGSAAGSLVAYSLKITDLDPIP 410 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 ++LLFERFLNP+R+SMPD D+DFCQ RR E+I YV KYG VA +ITFG L AK +R Sbjct: 411 YNLLFERFLNPERVSMPDIDVDFCQSRRGEIIDYVTQKYGKFNVAGVITFGKLLAKGVIR 470 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-----PSVDRLLEI 514 DV R MPY++ D + KLIP++ L D+ +E ++A+ P ++ + Sbjct: 471 DVARVCDMPYAEADAMAKLIPDE------LNITLKDAYDKEPKIAELISQNPKAAKIWKF 524 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFD 572 + LEGL R+A HAAG+VI + L P++R S D VTQ+++K++E LIKFD Sbjct: 525 ALDLEGLNRNAGQHAAGVVISNEELWNKTPLFRQPNSPEDRFVTQYSLKYLEDVDLIKFD 584 Query: 573 FLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ ++ + QR G ++ + +D Y ++ + +GIFQ+E GMR+ Sbjct: 585 FLGLKTLTVIDNAIKLVKQRTGREIVWEQVDKNDSGVYKMIQSGQAIGIFQIEGEGMRKL 644 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 ++PDC EDI+A+++LYRPGP+++ ++ + RK+G+ +I ++P+L T GVI Sbjct: 645 GTSLRPDCFEDIVAMLALYRPGPMESGMLDDFVKRKHGEAEITYAFKELEPILAPTYGVI 704 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL AD++RRAMGKKIKEEMD+ K F+ GA G++ A ++ Sbjct: 705 VYQEQVMQIVQAIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFVKGAEAKGLNGQKADDL 764 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 FEL+ KFA YGFNKSH+AAYA +++QTA++K +YP EF+AA +T E NV+KI ++ + Sbjct: 765 FELIVKFAGYGFNKSHSAAYAYVTFQTAYLKAYYPAEFMAALLTSEESNVDKIVRYIDEI 824 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIM-EASADKPFDS 864 ++ NI +PPS+N +F V N I + L AIKGVG +I+ E A F S Sbjct: 825 KRINIDTLPPSINKSTKEFSVVKNGEHDGIIFGLGAIKGVGGAAIENIIAERDAKGEFKS 884 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 ++DF SR+D K+N++V ESL+ AG D FG+SR LLQ+++NI + + + R N E Sbjct: 885 MDDFVSRIDPFKVNKKVFESLIKAGCFDEFGFSRKMLLQNVENIVEACKNAAQIRKNAAE 944 Query: 925 NIFAHEKGTFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 ++F + KI ++F ++ ++FE E +G Y SGHPLD YK + K+ Sbjct: 945 SLFGEDDSMNDVKINFVTINDEFDIK-QILKFEQES--VGIYLSGHPLDDYKDEINKIKY 1001 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 E + + I + + + T+ G ++G + Sbjct: 1002 TLSSEFESLPQSAEILVVGKIEDFSTRITKSGKKMGTIN 1040 >gi|294786036|ref|ZP_06751323.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 3_1_27] gi|294486373|gb|EFG33736.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 3_1_27] Length = 1133 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1029 (38%), Positives = 607/1029 (58%), Gaps = 73/1029 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSL EG S++N L K ++A+TD N+F A+EF QKA GI+P Sbjct: 4 NFVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L I +D + S+ LL GY+ L++L S +Y ++ ++ + Sbjct: 64 IIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-----QVAEKRLLTFKKLFGDRLYV 184 ++ L+E ++ LI L+ +G I +A NSS ++ ++ + F K + Y+ Sbjct: 112 KLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKISKIIDEYIEIFSK---ENFYL 167 Query: 185 NLQRHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 +Q + E++++ LA H L LVATNN ++ + YE D+++ + Sbjct: 168 EIQA----NELPETKIINDRFYDLAKLHNLELVATNNVYYVDRDGYELQDIIICIQSGLK 223 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIE 297 V +K+R R ++ + YLK++ EM + +A+ENT IA C+ + P + Sbjct: 224 VKEKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENTNHIADLCNVEISFGNLQFPYY-- 281 Query: 298 KECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARM 351 ++ E +G++ L I K Y +D RL++EL+VI +M Sbjct: 282 ----EVPSE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKM 328 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 +SGYF++V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+ Sbjct: 329 GYSGYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPE 388 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + + Sbjct: 389 RISMPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKK 448 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 +D+L KLI P + + + ++ + D + ++++++ ++E RH STHAAG Sbjct: 449 IDKLAKLIS--PFQTLE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAG 505 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 I+I L + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + Sbjct: 506 ILITKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKK 565 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + + VDL IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LY Sbjct: 566 YKNIDVDLYKIPLDDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALY 625 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+ + +V + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL Sbjct: 626 RPGPLQSGMVDDFINRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLG 685 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 EAD+LRRAMGKK M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ A Sbjct: 686 EADLLRRAMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVA 745 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+ISY TA+ K HYP + AA MT E+ I + DA++ I++ P++N+P F Sbjct: 746 YAMISYWTAYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSAYF 805 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 +V + I YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ Sbjct: 806 EVKNEGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALIL 865 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFS 944 +GALD +R + S+D + Y+ K + N+F T D+ L E F+ Sbjct: 866 SGALDEIKGNRKEKFLSIDKVLDYSSKSSKTDEIQQMNLFGEAAKTI-DRFNLAISEDFT 924 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGNNIRLA 998 ++ + E+ LGFY S HPLD YK IL IK E+ V G L Sbjct: 925 LDE---KLNKEKEFLGFYLSSHPLDRYKDILITFSIKKLSEIDLEEKQVVKTFGTITNLK 981 Query: 999 AMVVSKQQK 1007 ++ K+++ Sbjct: 982 KIITKKEEQ 990 >gi|307243299|ref|ZP_07525466.1| DNA polymerase III, alpha subunit [Peptostreptococcus stomatis DSM 17678] gi|306493317|gb|EFM65303.1| DNA polymerase III, alpha subunit [Peptostreptococcus stomatis DSM 17678] Length = 1200 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1065 (36%), Positives = 618/1065 (58%), Gaps = 64/1065 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G L+ ++ ++ + AITD ++F ++F +K +AGI+PI Sbjct: 9 FCHLHVHTEYSLLDGFSRLDKLISRVKDLGMSSCAITDHGSMFGVVDFYKKCKSAGIKPI 68 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + +D M ++ T ++LL +GY+ LI++VS Y+ D R Sbjct: 69 IGCEVYLAPRD---MESKDSTLDKYSSHLILLAENNQGYKNLIKIVSDAYV-DGFYYKPR 124 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF----FFNSSQVAEKRLLTFKKLFGDRLYVNL 186 L++ +EG+I L+ +G I +A F + +A++ + F K D ++ + Sbjct: 125 TDKDHLRKY-SEGIICLSACLNGEIPKAILARNFDKARSLAQENIDIFGK---DNFFLEV 180 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H+ D+ + +++L+ ++PLVATN++ ++ ED DVLM + + R Sbjct: 181 QDHKLAEDKEVNAGLLKLSKEMDIPLVATNDAHYVYREDARIQDVLMCIQMQKTLDDPSR 240 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + D Y+K+R EM +F+ PEA+ENT++IA RCS + +P F E Sbjct: 241 MKFPNDEFYIKSREEMEDLFAFSPEAVENTLKIAERCSVEFDFDSYHIPTFDVPE----G 296 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 L++ GL R +G QD R RL++E++VIA M + YFLIV DFI Sbjct: 297 YTSLTYLQHICNQGLLERYGD---EEGNVEQDLRDRLNYEIDVIANMGYIEYFLIVWDFI 353 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++K+NNI VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R++MPD DIDFC Sbjct: 354 NYSKQNNIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVTMPDIDIDFCY 413 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L + Y++VD + K IP Sbjct: 414 ERREEVIDYVKRKYGIDHVAQIITFGTMGAKLAIRDVGRVLDVAYNKVDSVAKEIPFALG 473 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A + R+ D V +++IS+++EG+ RHASTHAAG+VI RP+ + VP Sbjct: 474 MTID-KAFDMNPSLRKLYDGDHEVKEIIDISKEMEGMVRHASTHAAGVVISKRPVYEYVP 532 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----AQRGV--KVDL 598 +Y++ D TQF M +E+ GL+K DFLGL+TLT+++ +LD + ++G K+D Sbjct: 533 LYKN--QDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEINREKKGYKGKIDF 590 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S + ++D + + L++ TLG+FQLES GMR ++ ++P+C EDI+A +SL+RPGP+D+I Sbjct: 591 SKMEYNDPKVFDLISQANTLGVFQLESGGMRNFMKQLKPNCFEDIVAGISLFRPGPMDSI 650 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y N KN +++ +H + P+L T G ++YQEQVMQ+ + L GYSL +D +RRAM Sbjct: 651 PTYINCKNNPDQVTYLHEKLRPILDVTYGCLVYQEQVMQVVRDLGGYSLGRSDSVRRAMS 710 Query: 719 KKIKEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 KK + M+K+++ F I+G +NG+ + +A IF+ + FA Y FNKSHA Sbjct: 711 KKKMDVMEKERQYFIHGKLDENDNIEIAGCVRNGVPEDVANQIFDDMIDFAKYAFNKSHA 770 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAY V+SY+TA++K +YPVEF+AA MT M N +K+ ++ ++ I ++PP +N Sbjct: 771 AAYGVLSYETAYLKCYYPVEFMAALMTSIMGNNDKVVEYMRECSSMGIGVLPPDINKSFS 830 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I + LAA+K VG +I+ E A+ P+ +L D R+DSK N++ +ESL Sbjct: 831 KFSVDGDHIRFGLAAVKNVGANAIDNIVAEREANGPYKNLTDLVKRIDSKFANKKTIESL 890 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEK 942 + GA D G +R L+ + +++ +K ++F F+D + LE Sbjct: 891 IKCGAFDSTGDNRASLMFAFEDVLDSISRDKKRNVEGQMSMF----DMFADMGKQGELEL 946 Query: 943 FSVEN-----SSVRFENEQRVLGFYFSGHPLDVYKPIL---------RKMGIKGYEESVA 988 +E +R + E+ VLG Y SGHPL Y L R +K E + Sbjct: 947 GKIEGVEEFRDRIRLDMEKEVLGLYVSGHPLSEYSEKLEQRISITNARINKLKEEPEKLL 1006 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I + + M++SK+ T+ + ++ + E FP Sbjct: 1007 EINEQDHIIGGMIISKKLFSTKNNEMMAFINIEDLYGSMEVVVFP 1051 >gi|237740911|ref|ZP_04571392.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] gi|229431208|gb|EEO41420.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] Length = 1132 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/991 (39%), Positives = 596/991 (60%), Gaps = 67/991 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSL EG S++N L K ++A+TD N+F A+EF QKA GI+P Sbjct: 3 NFVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L I +D + S+ LL GY+ L++L S +Y ++ ++ + Sbjct: 63 IIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-----QVAEKRLLTFKKLFGDRLYV 184 +I L++ ++ LI+L+ +G I +A NSS ++ ++ + F K + Y+ Sbjct: 111 KINKEVLKKY-SQDLIVLSSSINGEIGKAILTNSSDEKISKIIDEYIEIFSK---ENFYL 166 Query: 185 NLQRHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 +Q + E++++ LA H L LVATNN ++ + YE D+++ + Sbjct: 167 EIQA----NELPETKIINDRFYDLAKLHNLELVATNNVYYVDRDGYELQDIIICIQSGLK 222 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIE 297 V +K+R R ++ + YLK++ EM + +A+ENT IA C+ + P + Sbjct: 223 VKEKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENTNHIADLCNIEISFGNLQFPYY-- 280 Query: 298 KECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARM 351 ++ E +G++ L I K Y +D +RL++EL+VI +M Sbjct: 281 ----EVPSE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILERLEYELSVIIKM 327 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 +SGYF++V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+ Sbjct: 328 GYSGYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPE 387 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + + Sbjct: 388 RISMPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKK 447 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 +D+L KLI P + + + ++ + D + ++++++ ++E RH STHAAG Sbjct: 448 IDKLAKLIS--PFQTLE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAG 504 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 I+I L + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + Sbjct: 505 ILITKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKK 564 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + + VDL IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LY Sbjct: 565 YKNIDVDLYKIPLDDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALY 624 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+ + +V + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL Sbjct: 625 RPGPLQSGMVDDFINRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLG 684 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 EAD+LRRAMGKK M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ A Sbjct: 685 EADLLRRAMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVA 744 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+ISY TA+ K HYP + AA MT E+ I + DA++ I++ P++N+P F Sbjct: 745 YAMISYWTAYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSSYF 804 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 +V + I YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ Sbjct: 805 EVKNEGITYSLAAIKNFGLTMAKKIIEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALIL 864 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFS 944 +GALD +R + S+D + Y+ K + N+F T DK L E F+ Sbjct: 865 SGALDEIKGNRKEKFLSIDKVLDYSSKASKTDEIQQMNLFGEAAKTI-DKFNLAISEDFT 923 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 ++ + E+ LGFY S HPLD YK I+ Sbjct: 924 LDE---KLNKEKEFLGFYLSSHPLDRYKDII 951 >gi|308068343|ref|YP_003869948.1| DNA polymerase III alpha subunit [Paenibacillus polymyxa E681] gi|305857622|gb|ADM69410.1| DNA polymerase III alpha subunit [Paenibacillus polymyxa E681] Length = 1225 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1036 (38%), Positives = 608/1036 (58%), Gaps = 30/1036 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA ++ + +A A+A+TD ++ A+ F + GI+P Sbjct: 3 SFVHLHVHSEYSLLDGAARTAELVKQASAYGMKALALTDHGVMYGAIPFYRACVENGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+ + + ++ P + ++LL GYQ L++L S +L + Sbjct: 63 IIGCEAYMTAGSRKERGSRKDQP---IYHLILLAKNKTGYQNLMKLCSIGHL-EGFHYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI + L EG+I L+ G + + A + ++ +FGD Y+ LQ H Sbjct: 119 RIDMEALAA-HHEGIICLSACLGGEVPQHLLHGREAEARRAAERYRNIFGDDFYLELQDH 177 Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ R + + + LA ++PLVATN+ +L+E D + DVL+ + V ++R R+ Sbjct: 178 GLSEQKRVNPLLIALAKELDIPLVATNDVHYLTEPDADVQDVLICIGTGKTVDDEERLRI 237 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T +LK++ +M +F + EA+ NTV IA +C L+ ILP + + + Sbjct: 238 PTRQLFLKSQEDMARLFPHVAEAIANTVRIAEKCELELEFGQSILPEY--RPLPE-GMTS 294 Query: 308 ENELRNKAVAGLEVRLAQGA-IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LRN V GLE R + + + QRL +ELN I M FS YFLIV DFI + Sbjct: 295 SSYLRNLCVQGLERRYGSDSRWEQPEERERLNQRLSYELNTIDSMGFSDYFLIVWDFIAF 354 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A K+ I GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDF +R Sbjct: 355 AHKHKIATGPGRGSSAGSLVAYVLNITNVDPMKYNLLFERFLNPERISMPDIDIDFSDER 414 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV KYG+E VAQIITFG+L A+AA+RDVGR L +PY +VD+ KLIP Sbjct: 415 RDEVIDYVVQKYGNEHVAQIITFGTLAARAAVRDVGRVLNVPYGEVDKAAKLIPAQLGIN 474 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + A+ + P LL+++ K+EG+ RHASTHAAG+VI PL+ VP+ Sbjct: 475 IR-HALEITPELKTLYETKPKTRELLDMAIKVEGMPRHASTHAAGVVISRTPLTDAVPL- 532 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 ++ +P+TQ++M+ +E+ GL+K DFLGL+TL+++++ + ++A+ G D S IP +D Sbjct: 533 QEGSEGVPLTQYSMENLERIGLLKMDFLGLRTLSIIERCIHWIAEDHGETPDFSRIPDND 592 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 TY LL T G+FQLES+G+R+ L+ ++P EDII++++LYRPGP+ I + K Sbjct: 593 PHTYDLLGKGDTGGVFQLESAGVRRVLKDLKPSVFEDIISVLALYRPGPMGFIPNFIQAK 652 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+ +I HP ++P+LK+T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E + Sbjct: 653 HGQIEISYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVL 712 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D ++ F+ G+ K G ++ A +++++ +FADYGF ++HAAAY V+++QTA++K HYPV Sbjct: 713 DLERGHFVEGSIKQGYTEEEAGRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPV 772 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKG 844 +F+A+ +T M + K+ ++ + R+ +I ++PP VN V F + I + LAAIK Sbjct: 773 QFMASMLTAVMGSHRKVAEYVVECRRMDITVLPPDVNESGVLFTPLQQGGIRFGLAAIKN 832 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VGT I+ ++ FDSL DFC RVD + N+RV+ESL+ AGA D R QLL Sbjct: 833 VGTQAMESILAVRKERLFDSLLDFCRRVDLRVCNKRVIESLIQAGAFDSLTGHRAQLLAM 892 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQR------ 957 LD A K R + ++F + + + +E +V +F Q+ Sbjct: 893 LDETVDAAVKWRKERDDLQIDMFGF--------VEMPNWDIEYPNVPQFSASQQLELERE 944 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +LG Y SGHPLD ++ +L E + A MVVS + T++G + + Sbjct: 945 LLGLYLSGHPLDDFESLLESSEADRLMELGDVPDETVVVTAGMVVSLKTITTKQGKAMAF 1004 Query: 1018 VTFSEPAKEYEANFFP 1033 + + + E FP Sbjct: 1005 IELEDQIERCEVVLFP 1020 >gi|256752386|ref|ZP_05493246.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256748721|gb|EEU61765.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 1101 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1059 (38%), Positives = 622/1059 (58%), Gaps = 65/1059 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61 Query: 71 IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IGC++ + MQD + N+ +VLL GY+ L+++V+ + ++ Sbjct: 62 IGCEIYVAPRSMQDREYGIDNENY-------HLVLLAKDMTGYKNLMKIVT-VASIEGFY 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 R+ +L+E +EGLI L+ +G + + A++ L + +FG Y+ Sbjct: 114 YKPRVDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ + ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +D Sbjct: 173 LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDED 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R D YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 233 RMSFPTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDS 292 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LRN GL R + ++ +RLD+EL+VI +M + YFLIV DF Sbjct: 293 CEY----LRNLCYEGLYKRYKNPS-------KEVIERLDYELSVIEQMGYVDYFLIVWDF 341 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC Sbjct: 342 IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + Sbjct: 402 YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFEL 461 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A++ + + + V +L++IS+ LEGL RHASTHAAG+VI PL V Sbjct: 462 GMTID-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ ++ D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + RGV +D + Sbjct: 521 PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVEKNRGVTIDFDSME 578 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD + Y L++ T G+FQLESSGM+Q + ++P +EDIIA +SLYRPGP+D I Y Sbjct: 579 YDDPKVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYL 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL +D++RRAM KK Sbjct: 639 ANKNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKM 698 Query: 723 EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+++++ FI GA +NG+ + A +F+ + FA+Y FNKSHAAAYA Sbjct: 699 DVMEQERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYA 758 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VI+YQTA++K +YPVEF+AA + +DN++K+ + Q R+ I+++PP +N F V Sbjct: 759 VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKVAFYVQVCRKMGIKVLPPDINESDSYFTV 818 Query: 831 GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +++I + L+A+K VG I+ E + F S+ DF R+ +LN++ +ESL+ AG Sbjct: 819 VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT------FSDKITLEKF 943 A FG R QLL + D + + + N N ++F + T F D LE+F Sbjct: 879 AFSSFGVRRSQLLSAYDKLMENIKKNRNNNLNGQISLFGEVEQTHGVGFEFPD---LEEF 935 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIR---GNN 994 S E+ LG Y SGHPL+ Y + K + K EE + + Sbjct: 936 P---KSRLLSMEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQE 992 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +A ++ +K+ K T+ + + +VT + E FP Sbjct: 993 VVIAGVIATKKIKFTKNNNIMAFVTIEDLYGTVEVIVFP 1031 >gi|157413280|ref|YP_001484146.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9215] gi|157387855|gb|ABV50560.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9215] Length = 1165 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1057 (37%), Positives = 626/1057 (59%), Gaps = 56/1057 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L HS YSLL+GA ++ I+D+ + +IA+TD ++ L+ +K I+PI Sbjct: 3 FVPLHNHSDYSLLDGASQISKIVDRASDLGMESIALTDHGVMYGVLDLVKKCKEKNIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG ++ + + P P +V+L GY+ L++L + +L + Sbjct: 63 IGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRGR 115 Query: 128 SV--RICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + R C+ S L + ++GLI+ T G I +A VAE + +KK+F D Y Sbjct: 116 GIFSRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIAIWYKKIFSDDFY 174 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR +++++ H++ ++ATN++ +LS D EAHD L+ V ++S Sbjct: 175 LEIQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R T Y+K+ +EM+ +F D + EA+ NTVEI+++ +P+F Sbjct: 235 EKRLRYTGTEYIKSENEMLELFKDHIDDVSINEAVNNTVEISQKVEVFDLFGNYRMPKFP 294 Query: 297 EKECDD---IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 E D + + NE GL RL + + + Y++RL EL +I M F Sbjct: 295 LNEDTDSFSLLTQLSNE-------GLLKRLKKNNFTE--VDESYKKRLSTELKIIKDMGF 345 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFL+V D+I++A+ N+IPVGPGRGS AGS+ AY+L IT+IDP+ LLFERFLNP R Sbjct: 346 PDYFLVVWDYIKFARDNSIPVGPGRGSAAGSLVAYSLQITNIDPVEHGLLFERFLNPARK 405 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC DRR+EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D Sbjct: 406 SMPDIDTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEAD 465 Query: 474 RLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 +L KLIP P L + D + FR+ + D V + ++++ ++EG + HA Sbjct: 466 KLAKLIPVVRGKPYKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLALRIEGTNKTYGVHA 525 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI PL +LVP+ R+ + +TQ++M IE GL+K DFLGLK LT++ K++ + Sbjct: 526 AGVVIASDPLDELVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIDKTVSLI 584 Query: 590 AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q G +++ +P +D +T+ L+ GIFQLESSGM+Q ++ +P+ +EDI ++++ Sbjct: 585 NQSTGKIINVDDLPQNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILA 644 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+D ++ + NRKNG EK+ HP I +L ET G+++YQEQ+M+IAQ L+GYS Sbjct: 645 LYRPGPLDAGLIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYS 704 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L +AD+LRRAMGKK EM K + F+ G+ K G+++ +A ++F+ + FA+Y FNKSH+ Sbjct: 705 LGDADLLRRAMGKKKVSEMVKHRNIFVKGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHS 764 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AY ++YQTA++K H+PV ++AA +++ + +K++++ + NI+++ PS+N V Sbjct: 765 TAYGAVTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMNIEVISPSINFSGV 824 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 DF + +N+I + L+AIK +G + R+I+E ++ F+SL D C R+ S LN+R LESL Sbjct: 825 DFTIKNNQILFGLSAIKNLGESAIRNIIENRNSFGIFESLSDLCDRLPSNVLNKRSLESL 884 Query: 886 VFAGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK- 942 + GALD F +R QLL L+++ +A ++R + N+F K FS+ L+ Sbjct: 885 IHCGALDEFSNDNNRAQLLSDLEHVIDWASSRNRDRLSGQGNLF-DSKEEFSNVAFLDTQ 943 Query: 943 -FSVENSSV--RFENEQRVLGFYFSGHPLD-VYKP--ILRKMGIKGYEESVATIRGNNIR 996 V++ S+ + + E+++LGFY S HPL + KP ++ + I EE+ + + Sbjct: 944 LKKVDDYSLIEKLKLEKQLLGFYLSDHPLKHLAKPAKLISPINISQLEETKDRTK---VS 1000 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 L M+ +Q TRKG R+ V + + EA FP Sbjct: 1001 LVVMIPDLKQITTRKGDRMAIVQLEDLSGSCEAIVFP 1037 >gi|282856832|ref|ZP_06266091.1| DNA polymerase III, alpha subunit [Pyramidobacter piscolens W5455] gi|282585342|gb|EFB90651.1| DNA polymerase III, alpha subunit [Pyramidobacter piscolens W5455] Length = 1155 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1047 (37%), Positives = 613/1047 (58%), Gaps = 60/1047 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL VH+ YSLL+GA+ ++ + A PA+A+TD ++ A+EF Q+ +AG++P Sbjct: 6 NFVHLHVHTEYSLLDGAIRCADLAKRCAEWGMPAVAMTDHGVMYGAVEFYQQCKSAGVKP 65 Query: 70 IIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS----RMYLLD 123 IIGC++ + D DN + ++LL EGY LI+LVS R + Sbjct: 66 IIGCEMYVSPDGIDNKEKKYN---------HLLLLAENDEGYHNLIKLVSIANTRGFYYK 116 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182 R+ L + ++GLI + +G I R + A +R ++ +FG + Sbjct: 117 P-----RVDHQLLAQY-SKGLICSSACLAGEIPRFLLEGDEKGALERAQMYRDIFGAESF 170 Query: 183 YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ + ++ ++ ++ ++++A + PL+ATN++ +L+ DY+ H++L+ V V++ Sbjct: 171 FLEIMPNQLPEQVAVNKMIIEMARKNNFPLLATNDAHYLNSSDYDWHELLLCVGTKKVIT 230 Query: 242 QKDRP--RVTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRC--SFILQVHAPILPRFI 296 R RV D Y ++ EM F S+ P++LENT+ IA RC F L +LP+F Sbjct: 231 DPGRMSFRVN-DFYFRSAQEMWGYFGSEAPDSLENTLRIAERCHFDFALNTGDYLLPKFE 289 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E + + L A +GL+ RL I +Y RL +EL +I +MKF GY Sbjct: 290 IPEGMTL----DTYLEKMARSGLKERLGVEVIP-----DEYENRLSYELGIIKQMKFPGY 340 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLI+AD I K + IP+GPGRGS AGS+ AY++ IT++DP+RF L+FERFLNP+R+SMP Sbjct: 341 FLIIADVIGACKSHGIPIGPGRGSAAGSLVAYSMKITELDPIRFGLIFERFLNPERVSMP 400 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D D RD +I+YV +KYG E V+QIITFG +++K A++DVGRA+ MPY+ V+++ Sbjct: 401 DIDTDVSDKGRDRLIKYVVDKYGVENVSQIITFGRMKSKQAIKDVGRAMGMPYADVNKVA 460 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 L+P D A + +A+ ++ +D + +LL + +EGL RH S HAAG+VI Sbjct: 461 NLVP-DGAKSIK-EAVEQTPDLQDLEKSDSQISKLLTSASSMEGLARHCSQHAAGVVITP 518 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 +PL+ LVP+ R + TQF+M + GL+K DFLGL+TL++L++++ + + G + Sbjct: 519 KPLTDLVPV-RQIEEGQVATQFSMDPVASLGLVKMDFLGLQTLSILEEAVANVKRNGTTL 577 Query: 597 -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 DL+ +P DD E Y LL TLGIFQLESSGMR+ ++ MQPD D++A+++LYRPGP+ Sbjct: 578 GDLNRLPLDDPEVYRLLQNADTLGIFQLESSGMRRLIKKMQPDRFADLVAILALYRPGPL 637 Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 ++ +V Y N K+G E++ +HPL++P+L ET GV++YQEQVM+ A L+GY+L AD+L Sbjct: 638 ESGMVDQYVNCKHG-EEVHYLHPLLEPVLNETYGVVLYQEQVMKCASTLAGYTLGGADLL 696 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK K MD+ + FI+GA+KNGI IF+++ KFA YGFNKSH+AAYA+++ Sbjct: 697 RRAMGKKKKSVMDEHRSIFINGAAKNGIDAEKGAEIFDIIEKFAGYGFNKSHSAAYALVT 756 Query: 774 YQTAWMKTHYPVEFLAASMTLEMD-NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 YQTAW+K HYP EF+AA ++ ++ E + ++ ++ R I ++ P +N DF Sbjct: 757 YQTAWLKVHYPKEFMAAYLSSKIGAKKEVMAEYVREVRASGIDVLAPDINQSYADFTATK 816 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 N I + L + VG I +A + PF DF RVD + + V+ESL+ AGA Sbjct: 817 NEIRFGLGGVTKVGEAALNSIFKAREEGGPFKGFWDFIVRVDKHSVGKAVIESLIKAGAF 876 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QLL SLDN+ + A ++ ++F T D+ L + N + + Sbjct: 877 DSLNSNRKQLLTSLDNLFEVAS--RRDSQGDQGSLFGDM--TSEDQPELAEVDDLNITEK 932 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----RGNNIRLAAMVVSKQQ 1006 E E+ LG Y SGHP D + R++ + +A + A ++ Q+ Sbjct: 933 LEMEKEALGMYISGHPFDGF----RRLAAQKANARIADLPYWKSDTTTPTFAGLLSGWQE 988 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T++G +G + + E + FP Sbjct: 989 KMTKRGDAMGIFSIDDGEDEIKVICFP 1015 >gi|317121217|ref|YP_004101220.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter marianensis DSM 12885] gi|315591197|gb|ADU50493.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter marianensis DSM 12885] Length = 1245 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/944 (40%), Positives = 567/944 (60%), Gaps = 56/944 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA + + + A PA+A+TD ++ A++F + GI+PI Sbjct: 4 FVHLHVHSEYSLLDGAARVGELAARAAELGMPALALTDHGVMYGAIDFYKACKKHGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC+L + + T + P S ++ L GY+ LI++VSR Y + Sbjct: 64 IGCELYL-----ARRTRHDREPKVDDQSYHLLALAQNETGYRNLIKIVSRAYA-EGFYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R L E +EGLI+ +G I R + A K + + ++FGDR Y +Q Sbjct: 118 PRADKELLAE-HSEGLIVTSGCIGSEIPRLLLEGREEEALKAVRWYLEVFGDRFYFEIQD 176 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +R +++++LA ++P+VATN+ +L ++D AH+VL+ + + R R Sbjct: 177 HGIPEERRAYARILELARRFDVPVVATNDVHYLHKDDAAAHEVLLCIQTGKTLDDPHRMR 236 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + YLK+ EM ++F D+PEAL NTV++A RC + +LP + E D Sbjct: 237 FDGAEFYLKSPEEMAALFRDVPEALANTVQLAERCQLEFEFGRFLLPHYEVPEGHDAA-- 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR E +L + G D RL+ EL VI RM + YFLIV DF+ + Sbjct: 295 --SYLRYLC----ETKLPERYPDAGSEVWD---RLNHELAVITRMGYPAYFLIVWDFVDY 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++N I VGPGRGS AGS+ AY L ITDIDPLR++LLFERFLNP+R++MPD DIDF R Sbjct: 346 ARRNGIAVGPGRGSAAGSLVAYVLGITDIDPLRYNLLFERFLNPERVTMPDIDIDFDDHR 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV KYG +RVAQIITFG + A+A +RDVGR + +PY +VD++ K++P Sbjct: 406 RDEVIDYVVRKYGRDRVAQIITFGRMLARAVIRDVGRVMGLPYGEVDKIAKMVPAQLG-- 463 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L QA+ ++A P V +L+++++KLEG+ RHAS HAAG+VIG PL + VP+ Sbjct: 464 ITLDQALEASPELKQAYEQQPVVRQLVDMARKLEGMPRHASVHAAGVVIGRDPLMEHVPL 523 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL----- 600 R ++ VTQF M +E+ GL+K DFLGL+TL ++Q++ + G + L+ Sbjct: 524 QR-MQDGSTVTQFPMTTLEELGLLKMDFLGLRTLHVIQETEAIINTTGARDVLAGESGGG 582 Query: 601 ---------------IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 IP DD T+ ++ T +FQ+ESSG Q L ++P IED+IA Sbjct: 583 GAEEPGAAPRFRVRDIPLDDPATFEAMSRGDTAAMFQVESSGFTQMLRSLRPSSIEDLIA 642 Query: 646 LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 V+L+RPGP+ + +V + RK+G+ + HP ++P+LKET G I+YQEQVMQIA +++ Sbjct: 643 AVALFRPGPLGSGMVDDFIKRKHGQVPVEYPHPWLEPILKETYGTIVYQEQVMQIASVMA 702 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 G++L EAD+LRRAMGKK EEM KQ+E+F++GA G+ + +A +IF+L+ FA YGFNK Sbjct: 703 GFTLGEADLLRRAMGKKKPEEMQKQREKFLAGAEAKGVDRKLAEHIFDLMEYFAGYGFNK 762 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAY ++Y TA++KTHYP ++AA+++ M N +++ ++ + R+ I ++PP +N Sbjct: 763 SHSAAYGYLAYVTAYLKTHYPAPYMAATLSSVMSNSDRVAEYIGECRRLGIPVLPPDINE 822 Query: 824 PCVDFKV-------GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSK 875 F V G I + LAA+K VG I+ A PF SL+DFC RVD + Sbjct: 823 SQALFTVVPDPRAPGGQAIRFGLAAVKNVGFGAIESIVSAREQGGPFRSLDDFCRRVDLR 882 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 ++NRR LESL+ AGA D G+ R +LL L+ + + AQ +K R Sbjct: 883 QVNRRALESLIKAGAFDSLGHPRARLLAGLEEVMERAQRWQKER 926 >gi|310779267|ref|YP_003967600.1| DNA polymerase III catalytic subunit, DnaE type [Ilyobacter polytropus DSM 2926] gi|309748590|gb|ADO83252.1| DNA polymerase III catalytic subunit, DnaE type [Ilyobacter polytropus DSM 2926] Length = 1138 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/979 (39%), Positives = 596/979 (60%), Gaps = 38/979 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSLL+G ++ LD+ ++AITD N+F A+EF +KA + GI+P Sbjct: 4 NFVHLHLHTEYSLLDGVGKIDEYLDRAKKLGMRSMAITDHGNMFGAVEFYKKALSKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128 I+G + + M + F +VLL GY+ L++L S YL +G Sbjct: 64 IVGMEAYLS---EFSMEEKSGRNF----HLVLLAKNETGYKNLMKLSSEAYL--KGFYYR 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLFG-DRLYVNL 186 RI L + ++G+I L+ G + + S+ +K + + ++FG + YV L Sbjct: 115 PRIDKEILAQ-HSKGIIALSACMQGELSKRILDEESEEDLDKAVNEYVEIFGKEDFYVEL 173 Query: 187 QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Q + G + + + LA H+L +VATN++ ++ D+ D+L+ V + +S + Sbjct: 174 QSN-GIKKQEKLNDALYTLAKKHDLKVVATNDTHYVYYGDHTLQDILICVQTGSKISDEK 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R ++ D +LK+R +M+ A++NTVEIA +C+ L+ P + C D Sbjct: 233 RMKIETDQLFLKSREQMLEELGKYDRAVDNTVEIADKCNLELEFGVFKFPEYKIPTCVDS 292 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +E LR GL+ R K +D +R+++EL+VI +M ++GYF++V DF Sbjct: 293 IREF---LRKLVYQGLKRRY------KNDLEKDVIERVEYELDVINKMDYAGYFVVVWDF 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +AKKN IPVGPGRGS AGS+ AY+L IT++DP++++L+FERFLNP+R+SMPD DID C Sbjct: 344 IDYAKKNRIPVGPGRGSAAGSMVAYSLGITELDPMKYNLIFERFLNPERISMPDIDIDIC 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RR EVI YV KYG +RVAQIITFG+++A+AA+RDVGR + +P +VD++ KLIP P Sbjct: 404 QERRQEVIDYVGEKYGKDRVAQIITFGTMKARAAIRDVGRVMNVPLFKVDKIAKLIP--P 461 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ + RE D L+E S++LE RHAS HAAG+VI PL+ V Sbjct: 462 FFSLD-RALKEVEELREVYETDSESQELIEYSKRLENTVRHASIHAAGVVITKDPLTDDV 520 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+Y D ++ + TQ+ MK +E+ GL+K DFLGL+ LT+LQ+++D++ + ++DL+ IP Sbjct: 521 PLYSDTKTKVVSTQYQMKELEELGLLKMDFLGLRNLTILQRTVDYIREDTNEEIDLNKIP 580 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 D E Y LL TLG+FQLES G+R+ L ++PD EDIIA+++LYRPGP+ + +V Sbjct: 581 LDSLEVYRLLQKGDTLGVFQLESHGIRKLLMKLKPDRFEDIIAVLALYRPGPLGSGMVDD 640 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + KNG+ I H ++ +LKET GVI+YQEQVM+IA +++ Y+L EAD+LRRAMGKK Sbjct: 641 FIEVKNGRAAIKYPHQSLEDVLKETYGVILYQEQVMKIANIMADYTLGEADLLRRAMGKK 700 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 M++ + +F+ A K G S+ A IF L+ KFA YGFNKSH+AAYA+++Y TA+ K Sbjct: 701 NMAIMEENRNKFVKRAVKKGYSEEKATEIFNLIDKFAGYGFNKSHSAAYALVAYWTAYFK 760 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 YP + AA MT E +N+EK+ + +DA++ I + P++N F V + + + ++ Sbjct: 761 GCYPKHYYAALMTSERNNIEKLAVYVEDAKEHGIGVALPNINKISTRFIVDGDLVRFGMS 820 Query: 841 AIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIK VG T I E + + + + E+F +R + +N++ LE+L+ +GALD +R Sbjct: 821 AIKNVGETLIERIKAEHARNGDYTTFENFVTRGKKEGVNKKALEALILSGALDSIPGNRR 880 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFENEQR 957 Q +S++ YA V K + N+F + T ++E++ +EN E+ Sbjct: 881 QKYESMEKALNYATKVMKEDDIQQMNLFGEARATIEKFQMPSVEEYKMENL---LTGEKE 937 Query: 958 VLGFYFSGHPLDVYKPILR 976 LGFYF+GHPLD Y+ +L+ Sbjct: 938 FLGFYFTGHPLDKYRQMLK 956 >gi|86604788|ref|YP_473551.1| DNA polymerase III subunit alpha [Synechococcus sp. JA-3-3Ab] gi|86553330|gb|ABC98288.1| DNA polymerase III, alpha subunit [Synechococcus sp. JA-3-3Ab] Length = 1161 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1057 (36%), Positives = 624/1057 (59%), Gaps = 58/1057 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L +HS YSLL+GA L +++++ A P +A+TD ++ A+E + + GI+P Sbjct: 2 AFVPLHLHSEYSLLDGASQLPLLIEQVVAMGLPGLALTDHGVMYGAIELVKLCKSKGIKP 61 Query: 70 IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + D++D + +P +VL +T +GY+ L++L + +L QG Sbjct: 62 IIGNEMYVINGDIRDKSRK-------YPKYHQVVLAKNT-QGYKNLVKLTTISHL--QGV 111 Query: 127 QS----VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 Q R C++ +L + EGLI+ +G +G + +A ++A + +++ FGD Sbjct: 112 QGKGIFARPCINKEYLAQY-KEGLIVTSGCLAGEVPQAILQGRPEIARQVAAWYQEQFGD 170 Query: 181 RLYVNLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Y+ +Q H GY DR+ Q+V++A +P++ TN+S F+S D EAHD L+ + Sbjct: 171 DYYIEIQDH-GYREDRFVNVQLVRIARELGIPIILTNDSHFISCWDVEAHDALLCIQTGK 229 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCS---FILQVHA 289 +++K+R R + YLK+ EM + D + EA+ NT+++ + + Sbjct: 230 SLTEKNRLRYSGTEYLKSPEEMRRLCRDHLEQEVIDEAIANTLKVLEKIEGYDLFGETRM 289 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 P P D + L A GL R G ++Y++RL FELN+I Sbjct: 290 PDYPVPPGHSAD-------SYLTELAWQGLAKRC--GVAYPDQIPENYQERLRFELNIIQ 340 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 + FS YFL+V D++++A+++ IPVGPGRGS AGS+ AYAL IT+IDP+++ LLFERFLN Sbjct: 341 QKGFSSYFLVVWDYVRYAREHGIPVGPGRGSAAGSLVAYALQITNIDPVKYGLLFERFLN 400 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R SMPD D DFC +RR E+I YV KYG ERVAQIITF + +KA L+DVGR L +PY Sbjct: 401 PERQSMPDIDTDFCIERRGELIDYVTRKYGQERVAQIITFNRMTSKAILKDVGRVLDIPY 460 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHA 525 ++ D++ KLIP P L+ + ++ F+E DP+ R +E+++ LEG + Sbjct: 461 AEADKMAKLIPVSRGKPAKLEEMIGENTPAPEFKEKYEKDPTTHRWIELARLLEGTNKTF 520 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 HAAG+VI PL ++VP+ + + +TQ++M+ IE GL+K DFLGL+ LT++Q++ Sbjct: 521 GVHAAGVVISKDPLDEIVPLQYNNEGQI-ITQYSMEDIESLGLLKMDFLGLRNLTMIQRA 579 Query: 586 LDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 ++ + + RGV +DL +P DD +TY LL GIFQLESSGM+Q + ++P +EDI Sbjct: 580 VELIREHRGVTIDLDNLPLDDEKTYQLLEKGELEGIFQLESSGMKQVVRELKPSNLEDIS 639 Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 ++++LYRPGP+D ++ + +RK+G++ + H L+ P+L++T G I+YQEQ+M+IAQ + Sbjct: 640 SVLALYRPGPLDTGMIPDFIDRKHGRKPVTYAHDLLKPILQDTYGAILYQEQIMRIAQDM 699 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GY+L +AD+LRRAMGKK EM+K +E+F+ GA + G++K +A +F+ + FA+Y FN Sbjct: 700 AGYTLGQADLLRRAMGKKKVSEMEKHREQFVRGAVERGVAKEVATELFDQMVAFAEYCFN 759 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSH+ AY +I++QTA++K +YP E++AA ++ + +K++++ IQI PP +N Sbjct: 760 KSHSTAYGLITFQTAYLKANYPTEYMAALLSSVGGDQDKVQRYITYCLSIGIQIEPPDIN 819 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRV 881 +DF + I + L A+K VG ++I+ A A PF SL DFC RVD +NRR Sbjct: 820 RSGLDFTPQGSSILFGLGAVKNVGEGAIQNILAARQAGGPFTSLADFCQRVDLHVVNRRA 879 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDK- 937 +ESL+ AGA D +R QL+ LD I +A K++ ++F +++G Sbjct: 880 IESLICAGAFDGISGNRKQLMADLDPILNWAAEQAKSKAIGQASLFDLLGNDQGFIEAPR 939 Query: 938 -ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 E F + +R E E +LGFY S HPL + R + + ++ Sbjct: 940 GPATEDFPPQE-KLRLERE--LLGFYVSDHPLRRIQEQARLLAPVNLSDLSGYAADTSVG 996 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + A++ + + T++G R+ + + EA FP Sbjct: 997 ILALLTAIKTVTTKRGDRMAILQLEDLTGSCEAVIFP 1033 >gi|123966261|ref|YP_001011342.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9515] gi|123200627|gb|ABM72235.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9515] Length = 1165 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1052 (37%), Positives = 617/1052 (58%), Gaps = 46/1052 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L HS YSLL+GA ++ I+D+ + +IA+TD ++ L+ +K GI+PI Sbjct: 3 FVPLHNHSDYSLLDGASQVSKIVDRASELGMESIALTDHGVMYGVLDLVKKCKDKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG ++ I + P P +V+L EGY+ L++L + +L + Sbjct: 63 IGNEMYI-------INGSIDDPQPKKEKRYHLVVLAKNHEGYKNLVKLTTISHLNGMRGR 115 Query: 128 SV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + R C+ L E +GLI+ T G I +A VAE +K L G+ Y+ Sbjct: 116 GIFSRPCIDKSLLEKYKDGLIISTACLGGEIPQAILKGRIDVAENIACWYKNLLGEDFYL 175 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H DR +++++ +++ ++ATN++ ++S D EAHD L+ V ++S + Sbjct: 176 EIQDHGSMEDRIVNVEMIRIGKKYQIKVIATNDAHYISNMDVEAHDALLCVLTGKLISDE 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297 R R T Y+K+ EM+ +F+D + EA+ NTVE++++ +P+F Sbjct: 236 KRLRYTGTEYIKSEIEMLRLFNDHIDNESIKEAINNTVEVSQKIEVFDLFGTYRMPKFPL 295 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 KE +K+ + L + GL RL + + + + Y +RL EL +I M F YF Sbjct: 296 KE----EKDSLSFLTKISKEGLLKRLNKANLDE--VDEIYTKRLSSELKIINDMGFPDYF 349 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+V D+I++A+ N+IPVGPGRGS AGS+ A++L IT+IDP++ LLFERFLNP R SMPD Sbjct: 350 LVVWDYIKFARDNSIPVGPGRGSAAGSLVAFSLQITNIDPVKHGLLFERFLNPARKSMPD 409 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D DFC DRR EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+L K Sbjct: 410 IDTDFCIDRRSEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGESDKLAK 469 Query: 478 LIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 LIP P L + D FR+ L D V R ++++ ++EG + HAAG+V Sbjct: 470 LIPVVRGKPYKLNEMIDKKSPSPEFRDKYLKDSKVKRWVDLALRIEGTNKTYGVHAAGVV 529 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQR 592 I L LVP+ R+ + +TQ++M IE GL+K DFLGLK LT++ K++ + + Sbjct: 530 IASESLDMLVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLIESST 588 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 G K+++ +P +D++T+ L+ GIFQLESSGM+Q ++ +P+ +EDI ++++LYRP Sbjct: 589 GQKINVDELPPNDNKTFDLIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRP 648 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+D ++ + NRKNG EKI HPLI +L ET G+++YQEQ+M+IAQ L+GYSL +A Sbjct: 649 GPLDAGLIPKFINRKNGSEKIDFPHPLIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDA 708 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM K + FI GA K G+ K IA ++F+ + FA+Y FNKSH+ AY Sbjct: 709 DLLRRAMGKKKVSEMVKHRNIFIEGACKKGVDKKIANDLFDQMVLFAEYCFNKSHSTAYG 768 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++YQTA++K HYPV ++A+ +++ + +K++++ + I+++ PS+N+ +DF V Sbjct: 769 AVTYQTAFLKAHYPVAYMASLLSVNAGSSDKMQRYISNCYSMGIEVISPSINSSGIDFTV 828 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 ++I + L+AIK +G + ++I+E F S D C R+ S LN+R LESL+ G Sbjct: 829 KKDQILFGLSAIKNLGDSAIKNIIENRNKLGNFKSFSDLCDRLPSNILNKRNLESLIHCG 888 Query: 890 ALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VE 946 ALD F +R QL LD + ++A ++R + N+F + +L K S V+ Sbjct: 889 ALDEFSENKNRAQLFSDLDYVMEWASSRNRDRISGQGNLFDSISNIEHKEFSLPKGSKVD 948 Query: 947 NSSV--RFENEQRVLGFYFSGHPLD-VYKP--ILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + S+ + + E+++LGFY S HPL + KP ++ + I E S + + L M+ Sbjct: 949 DYSLIEKLKLEKQLLGFYLSDHPLKHLAKPAKLVSPISISQLENSHDRTK---VSLVGMI 1005 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG R+ V + + EA FP Sbjct: 1006 PELKQITTRKGDRMAIVQLEDLSGTCEAIVFP 1037 >gi|291567264|dbj|BAI89536.1| DNA polymerase III alpha subunit [Arthrospira platensis NIES-39] Length = 1219 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1087 (36%), Positives = 629/1087 (57%), Gaps = 80/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++ + PAIA+TD ++ A+E + + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128 IIG ++ I + ++ + +G + V +L +GY+ L++L + +L QGK Sbjct: 62 IIGNEMYI-LNADVTVQQRGIKKYHQV----VLAKNTQGYKNLVKLTTISHLKGFQGKGI 116 Query: 129 -VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R C++ L E EGLI+ + G + +A +A + + +K++FGD Y+ + Sbjct: 117 FARPCINKELLEEYHEGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLEI 176 Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR +VQLA E+ +VATN+S F+S D EAHD L+ + ++++ +R Sbjct: 177 QDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDNR 236 Query: 246 PRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCS-FILQVHAPILPRFIEK 298 R + YLK+ EM+ +F D LP EA+ NT+E+A + + + P +P + Sbjct: 237 LRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPIP 296 Query: 299 ECDDIQKEEENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + L A GL+ RL AQG + YR+RL++EL ++ +M F+ YF Sbjct: 297 P----NHTADTYLEEIAWEGLKKRLNAQG---RSEIKPVYRERLEYELKMMQKMGFATYF 349 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+V D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD Sbjct: 350 LVVWDYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPD 409 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D DFC DRRDE+I+YV +KYG E+VAQIITF + +KA L+DV R L +PYS+ D++ K Sbjct: 410 IDTDFCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAK 469 Query: 478 LIPNDPAHPVSLQAIADDS----RFREA--------------RLADPSVDRLLEISQKLE 519 +IP P L+ + D F++A + +V + ++++ ++E Sbjct: 470 MIPVSRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIE 529 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G + HAAG+VI +PL ++VP+ R+ + +TQ+ M+ IE GL+K DFLGLK L Sbjct: 530 GTNKTFGVHAAGVVISKQPLDEIVPLQRNNDGSV-ITQYFMEDIESLGLLKMDFLGLKNL 588 Query: 580 TLLQKSLDFLAQRG--------------------VKVDLSLIPFDDHETYHLLTTKGTLG 619 T++Q++L++++Q K + +P D +TY +L G Sbjct: 589 TIIQRTLNYISQNHHLDIDPYNLAAEERKAMDILAKGSVKKMPEDVAKTYKILERGDLEG 648 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPL 677 +FQLESSGMRQ ++ ++P IEDI ++++LYRPGP+D ++ + NRK+ +E I H L Sbjct: 649 LFQLESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKL 708 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++P+L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK EM K +E FI GA+ Sbjct: 709 LEPILNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGAT 768 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 +NG+ + IA ++F+ + KFA+Y FNKSH+ AY I+YQTA++K +YP E++AA +T Sbjct: 769 RNGVPQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSG 828 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857 N +K+K + + + I ++PP +N VDF +NRI + L+AIK VG H++ Sbjct: 829 NTDKVKAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVR 888 Query: 858 AD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + PF SL D C R++ + +N R LESL+ +GA D +R Q ++ L+ + +AQ Sbjct: 889 EEGGPFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRA 948 Query: 917 KNRTNKHENIF------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 KNR N+F E + S + T K + + E+ +LGFY S HPL Sbjct: 949 KNREIGQTNLFDLVNYANTESNSPSGEPTFPKSDDYAPKDKLQFEKELLGFYVSDHPLKS 1008 Query: 971 YKPILRKMGIKGYEESVATIRGNN----IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 L G+ +V + +++AA +++ + T+KG R+ ++ + + Sbjct: 1009 ----LLDSGVLPDNVTVDKLSEQKSKAAVKVAATLINIKPHLTKKGDRMAFLLLEDLTGQ 1064 Query: 1027 YEANFFP 1033 +A FP Sbjct: 1065 IDAVVFP 1071 >gi|187734882|ref|YP_001876994.1| DNA polymerase III, alpha subunit [Akkermansia muciniphila ATCC BAA-835] gi|187424934|gb|ACD04213.1| DNA polymerase III, alpha subunit [Akkermansia muciniphila ATCC BAA-835] Length = 1174 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1057 (39%), Positives = 607/1057 (57%), Gaps = 66/1057 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS------QKAC 63 SFVHL H+ YSLL+GA+ + +++ + + PA+A+TD NLF A+E K+ Sbjct: 4 SFVHLHNHTEYSLLDGAVHIKDLIAECSRMGMPAVAVTDHGNLFGAIELVMETNSLNKSV 63 Query: 64 AAG------------IQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110 AA ++PI GC++ + ++K G+ + ++LL G+Q Sbjct: 64 AAWNKEHPEGPQKQEVKPIFGCEVYLSPTPISVKKQLPGRRKYT---HLLLLAENETGWQ 120 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L++LVSR +L + R+ + L+E EGLI T +GP++ + + AE+ Sbjct: 121 NLVKLVSRSHL-EGFYYKPRVDMETLREF-HEGLICCTACIAGPLNEWLLNDQPEKAEEA 178 Query: 171 LLTFKKLFGD-RLYVNLQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEA 227 LL K +FGD ++V LQ H G + ++ ++V++A P+VATN+ FL +ED++ Sbjct: 179 LLALKDIFGDDNIFVELQDH-GMEEQKKCLPELVRIARKTNTPIVATNDVHFLRKEDHDM 237 Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 HDVL+ + + ++ R R + + YLK+ EM +F D PEA+ENT++IA RC+ +++ Sbjct: 238 HDVLICIGTNEKLASPKRMRYSTEVYLKSPEEMREVFKDYPEAVENTLKIAERCNVAIKL 297 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 + ++ E D EE LR GLE R + +A ++ R RLD+EL + Sbjct: 298 DSTSTEKYPEFGTPDGSSREEY-LRKVCYKGLEERYGKERVAAD---KELRDRLDYELGI 353 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I ++KF YFLI ADFI WAK ++IPVGPGRGS AGS+ AYA+ IT+IDPLRF L+FERF Sbjct: 354 INQLKFPSYFLITADFINWAKDHDIPVGPGRGSAAGSLVAYAMKITNIDPLRFGLIFERF 413 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+S PD DIDFCQ RR EVI YV+ KYG V+ IIT+G++ AK+ LRDV R + M Sbjct: 414 LNPERVSPPDIDIDFCQTRRPEVIDYVRQKYGERAVSHIITYGTMGAKSVLRDVARVMDM 473 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 Y+ DR+ KLI P V+LQ + + RE +D L + +LEGL R+ Sbjct: 474 SYADGDRISKLIETGPK--VTLQSSYKSNEELRELIASDEGYAELWGYATRLEGLIRNVG 531 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+VIGDRPL + V + RD SD V Q +M I + GL+K DFLGLKTLT++ Sbjct: 532 VHAAGVVIGDRPLDEHVALTRDDLSDPHAAVVAQCDMSAIYEVGLLKMDFLGLKTLTVMH 591 Query: 584 KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 + + R + L +P DD ET LL T+G+FQLES GM IEDI Sbjct: 592 DAEQYARWRVPEFKLDSVPLDDRETLDLLNRGDTMGVFQLESGGMVDTCRRYGIQKIEDI 651 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 I L++LYRPG + + K G ++ HPL++ + ET GV+IYQEQV A+LL+ Sbjct: 652 IDLLALYRPGAMQFMDEMIEVKKGLRQVEYEHPLLEQVSGETYGVMIYQEQVQAAAKLLA 711 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFN 762 GY+L AD+LRRAMGKK +M K+K F+ G K N I + A IF+ + KFA YGFN Sbjct: 712 GYTLGGADLLRRAMGKKDPAKMAKEKAHFVEGCWKTNQIDEKTATAIFDKIEKFAGYGFN 771 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSH+A Y ISY TA++K H+PVEFL M+ E +N +KI F Q+A + I+I+PP VN Sbjct: 772 KSHSACYGHISYWTAYLKAHFPVEFLCGLMSNEANN-DKIGVFIQEANRMGIEILPPDVN 830 Query: 823 TPCVDFK-----VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKK 876 + F G + Y LAAIK VG + ++E + F S+ED C+R+DSK Sbjct: 831 KSMLKFTPEKMPSGKLAVRYGLAAIKNVGEGAMQILLEEREKNGEFSSMEDICNRLDSKS 890 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTF 934 +N+++LESL+ AGALD R L + +D A V K++ ++F E Sbjct: 891 VNKKILESLIRAGALDWTLEPRCVLFERVDLALSGASQVHKDKALGQGSLFDMTFEAPRV 950 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-----RKMGIKGYEESVAT 989 D+ + ++S E R +E+ +LG YF GHPLD + ++ ++G+ + T Sbjct: 951 KDEPAVPEWSKEQ---RMGDEKDLLGAYFCGHPLDSMRGVIDAEKYTRIGL------IDT 1001 Query: 990 IRGNNIR----LAAMVVSKQQKKTRKGSRIGWVTFSE 1022 + + ++ +A MV S K ++ G + +T + Sbjct: 1002 LEPHELKQKHQIAGMVRSVTPKISKAGRKFAILTLED 1038 >gi|126701019|ref|YP_001089916.1| DNA polymerase III DnaE [Clostridium difficile 630] gi|254977018|ref|ZP_05273490.1| DNA polymerase III DnaE [Clostridium difficile QCD-66c26] gi|255094345|ref|ZP_05323823.1| DNA polymerase III DnaE [Clostridium difficile CIP 107932] gi|255102599|ref|ZP_05331576.1| DNA polymerase III DnaE [Clostridium difficile QCD-63q42] gi|255308424|ref|ZP_05352595.1| DNA polymerase III DnaE [Clostridium difficile ATCC 43255] gi|255316098|ref|ZP_05357681.1| DNA polymerase III DnaE [Clostridium difficile QCD-76w55] gi|255518759|ref|ZP_05386435.1| DNA polymerase III DnaE [Clostridium difficile QCD-97b34] gi|255651937|ref|ZP_05398839.1| DNA polymerase III DnaE [Clostridium difficile QCD-37x79] gi|260684901|ref|YP_003216186.1| DNA polymerase III DnaE [Clostridium difficile CD196] gi|260688559|ref|YP_003219693.1| DNA polymerase III DnaE [Clostridium difficile R20291] gi|306521687|ref|ZP_07408034.1| DNA polymerase III DnaE [Clostridium difficile QCD-32g58] gi|115252456|emb|CAJ70299.1| DNA polymerase III DnaE subunit alpha [Clostridium difficile] gi|260211064|emb|CBA66425.1| DNA polymerase III alpha subunit [Clostridium difficile CD196] gi|260214576|emb|CBE07133.1| DNA polymerase III alpha subunit [Clostridium difficile R20291] Length = 1189 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1059 (36%), Positives = 613/1059 (57%), Gaps = 55/1059 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G + ++ + +IAITD +F ++F + A GI+PI Sbjct: 5 FAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIKEGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + L+ + + +VLL EGY+ LI++VS Y+ + R Sbjct: 65 IGCEVYTAAR-GLRDKDPNYDKYQG--HLVLLAKNMEGYKNLIKIVSTSYV-EGFYYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189 + + L++ +G+I L+ +G + RA + + A++ L ++ +FG+ ++ +Q H Sbjct: 121 VDMEELKK-HNKGIIALSACLAGDVARALMNRNYEKAKQFALDYRDIFGEENFFLEIQDH 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ S +V+L+ +PLVATN+ ++++ED + HDVLM + ++ +R R Sbjct: 180 NLPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLNDPNRMRF 239 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+R EM +F EA++NTV+IA C+ + LP++ E Sbjct: 240 GSDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEG----YTP 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E LR GL+ R + + +RL++EL+VI +M + YFLIV DFI ++ Sbjct: 296 ETYLRELCFNGLKERYDN-------PSNEILERLNYELDVIEKMGYVEYFLIVWDFINFS 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DIDFC +RR Sbjct: 349 KENNIIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDIDFCYERR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV+ KYG + VAQIITFG++ AKAA+RDVGR L + Y++VD++ K IP + Sbjct: 409 EEVIDYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKVAKEIPFALGMTI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + +E DP ++ IS+++EG+ RHASTHAAG+VI P+ + VP+Y+ Sbjct: 469 D-KALDTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDEYVPLYK 527 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------KVDLSLI 601 D TQF M +E+ GL+K DFLGL+TLT+++ +LD + + V K+D S + Sbjct: 528 --HQDAITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEKIDFSKM 585 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 +DD + Y +L++ TLG+FQLES+GMR ++ ++PD EDI+A +SL+RPGP+D+I Y Sbjct: 586 DYDDPKVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPMDSIPAY 645 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K+ + + +H + P+++ T G ++YQEQVMQ+ + L GYS +D++RRAM KK Sbjct: 646 IKNKSNPKDVTYLHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRRAMSKKK 705 Query: 722 KEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 + M+++++ F I+G +NG+ + IA IF+ + FA Y FNKSHAAAY Sbjct: 706 MDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNKSHAAAY 765 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 V++Y+TA++KT+YPVEF+AA +T M N +K+ ++ ++ + I ++PP +N F Sbjct: 766 GVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINKSFSKFS 825 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V + I + LAA+K VG +I+ E ++ F L D R+D K N+RV+ESL+ Sbjct: 826 VEGDNIRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVIESLIKC 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKF 943 GA D +R L+ +++ + K ++F + E F +L K Sbjct: 886 GAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQIYSLPKR 945 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM---------GIKGYEESVATIRGNN 994 R E+ VLG Y SGHPL ++ L++ +K EES + + Sbjct: 946 QEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYLQMNETD 1005 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+V+K K T++ + ++ + E FP Sbjct: 1006 VIMGGMIVTKTIKTTKRNEIMAFIELEDLYGAIEIIVFP 1044 >gi|78777108|ref|YP_393423.1| DNA polymerase III subunit alpha [Sulfurimonas denitrificans DSM 1251] gi|78497648|gb|ABB44188.1| DNA polymerase III, alpha subunit [Sulfurimonas denitrificans DSM 1251] Length = 1186 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1053 (37%), Positives = 619/1053 (58%), Gaps = 58/1053 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L N++ ++ ++A+TD N+F A++F Q+ AAGI+PI Sbjct: 6 FTHLHLHTEYSLLDGANKLTNLVKQVKELGMTSVAMTDHGNMFGAIDFYQQMRAAGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 IG + I ++ K F I L +GY+ L+ L S+ ++ +G Sbjct: 66 IGMEGYIHNGGSMD-DKSSKQRF----HICLFAKNQKGYENLMYLSSKAFI--EGFYYFP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAF-FFNSSQVAEKRL---------LTFKKLFG 179 RI + L+ +EGLI + G ++ N V L L +K++FG Sbjct: 119 RINKNELRA-HSEGLICTSACLQGEVNWHLNLSNERNVKNGALGYDGAKAVALEYKEIFG 177 Query: 180 DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ L RH D+ + + QV++L+ ++ +VATN++ + ED + H+ M + + Sbjct: 178 DDFYLELMRHGIGDQLFIDEQVLKLSKELDIKVVATNDTHYTFAEDAQYHEAFMCIGMNK 237 Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295 + +R R + + YLK+ ++M +F+D+PEA+E+T EI +C+ L++ P+ P F Sbjct: 238 LYDDPNRMRHSVHEFYLKSPAQMAMLFADIPEAIEHTQEIVEKCNLELKLGDPVPPNFKF 297 Query: 296 ----IEKECDDIQKEEENELRN-----KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 + +I ++NE+ + GLE RLA +A+ H Q+YR RLDFE+N Sbjct: 298 SAEYARNDGLEINGSDKNEIDAEYFVYRCKIGLEHRLAH--VAEEKH-QEYRDRLDFEMN 354 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI MKF GY LIV DF++ AK+ I VGPGRGS AGS+ AY+L ITDIDP+++ LLFER Sbjct: 355 VINSMKFPGYMLIVWDFVKVAKEKGIAVGPGRGSAAGSLVAYSLEITDIDPMKYDLLFER 414 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD D+DF Q RR EVI YV KYG +VAQIITFGSL AK +RDV R L Sbjct: 415 FLNPERVSMPDIDMDFMQARRGEVIDYVVEKYGRNQVAQIITFGSLLAKGVIRDVARVLD 474 Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF------REARL-----ADPSVDRLLEIS 515 MP S+ D++ KL+P++ ++L + F +E +L +D + R+ E + Sbjct: 475 MPLSEADKMAKLVPDELG--ITLNGRTKNGEFIAGAFQKEPKLKELIDSDANAARVWEFA 532 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +KLEGL R++ HAAG+VI + L + P+Y+ D+ VTQ+++ ++E LIKFDFLG Sbjct: 533 KKLEGLKRNSGIHAAGVVISNEELWKKTPIYKPSGEDVFVTQYSLNYLEDVDLIKFDFLG 592 Query: 576 LKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 LKTL ++ ++ + R K V I +D + Y ++ T+G+FQ+ESSGM+ + Sbjct: 593 LKTLDVIDNAIKLIKFRYNKDVIWHEIDENDPKVYDVIRGGNTVGMFQIESSGMQDLNKQ 652 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 ++PD ED+IA+++LYRPGP+++ ++ + RK+G+EKI ++P+LK T GVI+YQ Sbjct: 653 LKPDSFEDLIAVLALYRPGPMESGMLKSFIERKHGREKIEYTFDSMEPILKNTYGVIVYQ 712 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQI Q + G+SL +D++RR+MGK K++M + F GA G+ A +F++ Sbjct: 713 EQVMQIVQTVGGFSLGYSDIIRRSMGK--KKDMSVYNDEFAKGAQSQGLDYAEASKLFDI 770 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSH+AAYA+I++QTAW+KT+YP EF+AA +T + DN +K+ ++ + ++ Sbjct: 771 IEKFAGYGFNKSHSAAYAMITFQTAWLKTYYPNEFMAALLTSDKDNTDKVVRYIDETKRM 830 Query: 813 NIQIMPPSVNTPCVDFK--VGDNR--IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLED 867 I++ PP + ++F DNR + + L AIKGVG I+E AD F SLED Sbjct: 831 GIELSPPDICDSQLEFSAITKDNREIVLFGLGAIKGVGEAAVLSILETRADGGEFKSLED 890 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +R++ K+N+RV+ES++ AG D FG+SR LL ++ I A+ + N ++F Sbjct: 891 FVNRIEPSKVNKRVVESIIKAGGFDRFGFSRKALLDQIEKIVDTAKDASMAKKNAVGSLF 950 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + S ++ L E E+ +GFY SGHPLD ++ L ++ E Sbjct: 951 GDDSEITSVELKLSNSPEYELKEILEFEKETIGFYISGHPLDEFRDKLDELDYTLSSELE 1010 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 + G + +K ++KGS+ G V Sbjct: 1011 SVKDGTYAIFIGKIEEIVKKTSKKGSQFGIVNL 1043 >gi|269798464|ref|YP_003312364.1| DNA polymerase III subunit alpha [Veillonella parvula DSM 2008] gi|269095093|gb|ACZ25084.1| DNA polymerase III, alpha subunit [Veillonella parvula DSM 2008] Length = 1135 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1015 (37%), Positives = 619/1015 (60%), Gaps = 39/1015 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + QPA+AITD N+++A+ F ++ A G++PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGKQ 127 IGC++ + ++N +G++ + ++LL T EGY+ L+++VS+ +L + + Sbjct: 64 IGCEVYV-TENNRFDRPEGRSR-ERLKHLILLAETMEGYRNLVKIVSKASTEGMLYRPRA 121 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 + + ++G+I L+ G I + ++ + A++ + + + +G D ++ + Sbjct: 122 DRDLLRQY-----SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEI 176 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H + + + ++++L+ + L +VA+N+ ++ +ED +A D+ + ++ ++ DR Sbjct: 177 QNHGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDR 236 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + D YLK+ EM +F +P A+ENT++IA RC+ LP F D+ Sbjct: 237 LKFPNDEFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHF------DVP 290 Query: 305 KEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E ++ + V E+ RL G +++ ++RLD+EL+VI M F YFLIV D+ Sbjct: 291 EGETSKTYLRKVCEREIPRLY------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDY 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 +++A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC Sbjct: 345 VRYAREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++R + I YV KYG RV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ Sbjct: 405 YEKRGQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNEL 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++L + ADP+V L + +KLEG+ R++STHAAG+VI PL V Sbjct: 465 G--ITLDKALQGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602 P+ ++ + VTQ++ IE+ GL+K DFLGL+TLT++ +L + A RG+ +DL IP Sbjct: 523 PV-QNANDEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIP 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 DD LLT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + +V Sbjct: 582 LDDKAACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVAD 641 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + +R++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK Sbjct: 642 FIDRRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKK 701 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + + Q+E FI G+ KNGI +++A +F+LL FA YGFNKSH+AAYA I+YQTA++K Sbjct: 702 KESVLKAQRESFIQGSVKNGIDESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLK 761 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HY EF+AA+MT M N++K+ + ++ N++++ P +N F V D+ I + L Sbjct: 762 AHYFPEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDDAIRFGLG 821 Query: 841 AIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK VG R I E + + + DFC RVD+K +N+R+LESL+ G++D F +R Sbjct: 822 GIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGSMDGFKENRN 881 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957 QLL ++ Q +K+ N+F E F +E S ++ + ++E+ Sbjct: 882 QLLHMYESAQAVGAKEQKDAAMGTMNLFGDMEEAVDFIPVPNVEDLSEDD---KLKDEKE 938 Query: 958 VLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 GFY +GHPL Y L + + E+ G I ++ +K + T++ Sbjct: 939 YTGFYITGHPLQGYAKELEGLFELGALAENPEQYDGQTITFGGLIENKSDRMTKR 993 >gi|254525897|ref|ZP_05137949.1| putative DNA polymerase IIIalpha subunit subfamily [Prochlorococcus marinus str. MIT 9202] gi|221537321|gb|EEE39774.1| putative DNA polymerase IIIalpha subunit subfamily [Prochlorococcus marinus str. MIT 9202] Length = 1165 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1054 (37%), Positives = 622/1054 (59%), Gaps = 50/1054 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L HS YSLL+GA ++ I+D+ + +IA+TD ++ L+ +K I+PI Sbjct: 3 FVPLHNHSDYSLLDGASQISKIVDRASDLGMESIALTDHGVMYGVLDLVKKCKEKNIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG ++ + + P P +V+L GY+ L++L + +L + Sbjct: 63 IGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRGR 115 Query: 128 SV--RICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + R C+ S L + ++GLI+ T G I +A VAE + +KK+F D Y Sbjct: 116 GIFSRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIAIWYKKIFADDFY 174 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR +++++ H++ ++ATN++ +LS D EAHD L+ V ++S Sbjct: 175 LEIQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R T Y+K+ +EM+ +F D + EA+ NTVEI+++ +P+F Sbjct: 235 EKRLRYTGTEYIKSENEMLELFKDHIDDVSINEAVNNTVEISQKVEVFDLFGNYRMPKFP 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E D + L + GL RL + + + Y++RL EL +I M F Y Sbjct: 295 LNEDTD----SFSLLTKLSNEGLLKRLKKNNFTE--VDESYKKRLSTELKIIKDMGFPDY 348 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+V D+I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP R SMP Sbjct: 349 FLVVWDYIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMP 408 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DFC DRR+EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+L Sbjct: 409 DIDTDFCIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLA 468 Query: 477 KLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 KLIP P L + D + FR+ + D V + ++++ ++EG + HAAG+ Sbjct: 469 KLIPVVRGKPYKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLAMRIEGTNKTYGVHAAGV 528 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI PL +LVP+ R+ + +TQ++M IE GL+K DFLGLK LT++ K++ + Q Sbjct: 529 VIASDPLDELVPLQRNNEGQI-ITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLINQS 587 Query: 593 -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G +++ +P +D +T+ L+ GIFQLESSGM+Q ++ +P+ +EDI ++++LYR Sbjct: 588 TGKIINIDDLPQNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYR 647 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+D ++ + NRKNG EK+ HP I +L ET G+++YQEQ+M+IAQ L+GYSL + Sbjct: 648 PGPLDAGLIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGD 707 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EM K + F++G+ K G+++ +A ++F+ + FA+Y FNKSH+ AY Sbjct: 708 ADLLRRAMGKKKVSEMVKHRNIFVNGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAY 767 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 ++YQTA++K H+PV ++AA +++ + +K++++ + I+++ PS+N VDF Sbjct: 768 GAVTYQTAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDFT 827 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + +N+I + L+AIK +G + R+I+E ++ F+SL D C R+ S LN+R LESL+ Sbjct: 828 IKNNQILFGLSAIKNLGDSAIRNIIENRNSFGIFESLSDLCDRLPSNVLNKRSLESLIHC 887 Query: 889 GALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK--FS 944 GALD F +R QLL L+++ +A ++R + N+F K FS+ L+ Sbjct: 888 GALDEFSNDNNRAQLLSDLEHVIDWASSRNRDRLSGQGNLF-DSKEEFSNVAFLDTQLKK 946 Query: 945 VENSSV--RFENEQRVLGFYFSGHPLDVY---KPILRKMGIKGYEESVATIRGNNIRLAA 999 V++ S+ + + E+++LGFY S HPL ++ + I EE+ + + L Sbjct: 947 VDDYSLIEKLKLEKQLLGFYLSDHPLKHLAKQAKLISPINISQLEETKDRTK---VSLVV 1003 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ +Q TRKG R+ V + + EA FP Sbjct: 1004 MIPDLKQITTRKGDRMAIVQLEDLSGSCEAIVFP 1037 >gi|284051053|ref|ZP_06381263.1| DNA polymerase III subunit alpha [Arthrospira platensis str. Paraca] Length = 1219 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1087 (36%), Positives = 629/1087 (57%), Gaps = 80/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++ + PAIA+TD ++ A+E + + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128 IIG ++ I + ++ + +G + V +L +GY+ L++L + +L QGK Sbjct: 62 IIGNEMYI-LNADVTVQQRGIKKYHQV----VLAKNTQGYKNLVKLTTISHLKGFQGKGI 116 Query: 129 -VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R C++ L E EGLI+ + G + +A +A + + +K++FGD Y+ + Sbjct: 117 FARPCINKELLEEYHEGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLEI 176 Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR +VQLA E+ +VATN+S F+S D EAHD L+ + ++++ +R Sbjct: 177 QDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDNR 236 Query: 246 PRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCS-FILQVHAPILPRFIEK 298 R + YLK+ EM+ +F D LP EA+ NT+E+A + + + P +P + Sbjct: 237 LRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPIP 296 Query: 299 ECDDIQKEEENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + L A GL+ RL AQG + YR+RL++EL ++ +M F+ YF Sbjct: 297 P----NHTADTYLEEIAWEGLKKRLNAQG---RSEIKPVYRERLEYELKMMQKMGFATYF 349 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+V D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD Sbjct: 350 LVVWDYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPD 409 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D DFC DRRDE+I+YV +KYG E+VAQIITF + +KA L+DV R L +PYS+ D++ K Sbjct: 410 IDTDFCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAK 469 Query: 478 LIPNDPAHPVSLQAIADDS----RFREA--------------RLADPSVDRLLEISQKLE 519 +IP P L+ + D F++A + +V + ++++ ++E Sbjct: 470 MIPVSRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIE 529 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G + HAAG+VI +PL ++VP+ R+ + +TQ+ M+ IE GL+K DFLGLK L Sbjct: 530 GTNKTFGVHAAGVVISKQPLDEIVPLQRNNDGSV-ITQYFMEDIESLGLLKMDFLGLKNL 588 Query: 580 TLLQKSLDFLAQRG--------------------VKVDLSLIPFDDHETYHLLTTKGTLG 619 T++Q++L++++Q K + +P D +TY +L G Sbjct: 589 TIIQRTLNYISQNHHLDIDPYDLAANERKAMDILAKGSVKKMPEDVAKTYKILERGDLEG 648 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPL 677 +FQLESSGMRQ ++ ++P IEDI ++++LYRPGP+D ++ + NRK+ +E I H L Sbjct: 649 LFQLESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKL 708 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++P+L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK EM K +E FI GA+ Sbjct: 709 LEPILNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGAT 768 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 +NG+ + IA ++F+ + KFA+Y FNKSH+ AY I+YQTA++K +YP E++AA +T Sbjct: 769 RNGVPQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSG 828 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857 N +K+K + + + I ++PP +N VDF +NRI + L+AIK VG H++ Sbjct: 829 NTDKVKAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVR 888 Query: 858 AD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + PF SL D C R++ + +N R LESL+ +GA D +R Q ++ L+ + +AQ Sbjct: 889 EEGGPFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRA 948 Query: 917 KNRTNKHENIF------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 KNR N+F E + S + T K + + E+ +LGFY S HPL Sbjct: 949 KNREIGQTNLFDLVNYANTESNSPSGEPTFPKSDDYAPKDKLQFEKELLGFYVSDHPLKS 1008 Query: 971 YKPILRKMGIKGYEESVATIRGNN----IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 L G+ +V + +++AA +++ + T+KG R+ ++ + + Sbjct: 1009 ----LLDSGVLPDNVTVDKLSEQKSKAAVKVAATLINIKPHLTKKGDRMAFLLLEDLTGQ 1064 Query: 1027 YEANFFP 1033 +A FP Sbjct: 1065 IDAVVFP 1071 >gi|37523503|ref|NP_926880.1| DNA polymerase III subunit alpha [Gloeobacter violaceus PCC 7421] gi|35214507|dbj|BAC91875.1| DNA polymerase III alpha subunit [Gloeobacter violaceus PCC 7421] Length = 1159 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1057 (36%), Positives = 609/1057 (57%), Gaps = 57/1057 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V+L HS YSLL+GA + +++++ + PAIAITD ++ A+E +K AAG++PI Sbjct: 3 YVNLHTHSDYSLLDGASQVPDLIERAKGLEMPAIAITDHGVMYGAIELIKKCRAAGLKPI 62 Query: 71 IGCQ---LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGK 126 +G + ++ D++D + + +LL GY+ L++LV+ +L QGK Sbjct: 63 VGTEGYVINGDIRDKSRRYRRYHQ--------ILLAKNLTGYKNLVKLVTISHLDGVQGK 114 Query: 127 QSV-RICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 R C++ + EG+I + G I + + A + +K LFGD Y+ Sbjct: 115 GIFSRPCMNKEMLVQYHEGIICTSACLGGEIPQLILAGQFEQARRTTQWYKDLFGDDFYL 174 Query: 185 NLQRHRGYDRYRESQVVQLAYTH-----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 +Q H RE +VV +A H + ++ATN+S F S ED +AHD L+ + + Sbjct: 175 EIQDH----GQREDRVVNVAVVHLGRELGIKVIATNDSHFTSCEDVDAHDALLCIQTGKL 230 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQ--VHAPI 291 V +++R R T +LK+ +M +F D + +AL T+EIA + + + Sbjct: 231 VVEENRMRYTGTEFLKSAEQMAGMFRDHLSDEVIAQALTTTLEIAEKVEKYDRELLGDSR 290 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 LPRF E+ L G+ R A DYR+RL +EL +I +M Sbjct: 291 LPRFPIPHG----HTAESYLEQVTWEGMRERFGSEI------APDYRERLKYELGIIEQM 340 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F+ YFL+V D+I++A+ + I VGPGRGS AGS+ AYAL IT+IDP+R++LLFERFLNP+ Sbjct: 341 GFATYFLVVWDYIKYARDHGIAVGPGRGSAAGSLVAYALRITNIDPVRYNLLFERFLNPE 400 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R SMPD D DFC +RRDE+IRYV KYG + VAQIITF L +KA L+DV R L + YS+ Sbjct: 401 RKSMPDIDTDFCIERRDELIRYVTEKYGEQYVAQIITFNRLTSKAVLKDVARVLDISYSE 460 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHAST 527 D+L KLIP PV L+ + + F+++ D V + +E++ ++EG + Sbjct: 461 ADKLAKLIPVVRGKPVPLKKMISEETPAPEFKQSYEGDERVRKWVELAMRIEGTNKTFGV 520 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAG+VI PL +LVP+ R+ + +TQ+ M+ I GL+K DFLGL+ LT++ ++ + Sbjct: 521 HAAGVVISSVPLDELVPLQRNNDGQV-ITQYYMEDIADLGLLKMDFLGLRNLTMIHRAQE 579 Query: 588 FLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + + RGV++DL +P +D TY LL GIFQLESSGM+ + ++P IEDI ++ Sbjct: 580 LIERYRGVRIDLDNLPLEDSGTYALLGKADLEGIFQLESSGMKAVVRDLRPSNIEDISSI 639 Query: 647 VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++LYRPGP+D ++ + NRK+G++KI +HPL++P+LKET GV+ YQEQ+M++AQ L G Sbjct: 640 LALYRPGPLDAGLIPEFINRKHGRKKIEYLHPLLEPILKETYGVLCYQEQIMKVAQELGG 699 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L +AD+LRRAMGKK +EEM+K + F+ G++KNG+ +A +FE + FA+Y FNKS Sbjct: 700 YTLGQADLLRRAMGKKKREEMEKHRSIFVDGSAKNGVPSRVADELFEQMVVFAEYCFNKS 759 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAY +++QTA++K HYPVE++AA ++ + +K++K+ I+I PP +N Sbjct: 760 HSAAYGYVTFQTAYLKAHYPVEYMAALLSSVKGDQDKVQKYIASCMGMGIEIEPPDINRS 819 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883 DF + I + L A+K VG + +++A + PF +L + C RVD + +N+R LE Sbjct: 820 GFDFTPQEKSILFGLGAVKNVGEGAIQALLDARDSQGPFKNLANLCDRVDMRVINKRALE 879 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 SL+ AGA D F +R QL+ ++ + +AQ ++R N+F G T + Sbjct: 880 SLIKAGAFDAFSSNRGQLIADMEKVVDWAQDRARDRALGQFNLFDALSGGGDRNPTGYQS 939 Query: 944 SVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 + + + E+ +LGFY S HPL + R + + + + Sbjct: 940 APSAPPTPDLPPADKLKFERELLGFYISDHPLKAVRESARLLAPVNLADLADCRAESTVS 999 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A+V + T+KG R+ V + EA FP Sbjct: 1000 AIALVREVKNVVTKKGDRMAIVQIEDLTGSTEAVVFP 1036 >gi|116327113|ref|YP_796833.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116119857|gb|ABJ77900.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 1176 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1042 (37%), Positives = 611/1042 (58%), Gaps = 44/1042 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H++YS+L+GA+ + ++ + + ++A+TD N+F A+EF +A GI+PI Sbjct: 8 FAHLHLHTNYSMLDGAIRIKELMQHVKENGMSSVAMTDHGNMFGAVEFYNEATKQGIKPI 67 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + + + T K + ++LL EGY+ LI L S+ Y K++ R Sbjct: 68 IGSEFYVS-PNRKQETEMVKIADGSAYHLILLAKNEEGYKNLIRLSSKSYTEGFYKKA-R 125 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN----SSQVAEKRLLTFKKLFGDRLYVNL 186 I L + GL+ LT +G ++R S Q+A K F+K + Y+ + Sbjct: 126 IDYDLLAQ-HNGGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRK---EDFYMEI 181 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ Q+ +PLV TN+S FL ++D EA D+L+ + ++ Sbjct: 182 QNHGIPEQMTVAKQIYDFGKRTGIPLVVTNDSHFLKKDDQEAQDILLRIGMQKRITDPME 241 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + Y+K+ EM +F ++PEA NT+EI+ + LQ +LP F E D Sbjct: 242 FGFNGEFYVKSPDEMARVFPEIPEAFYNTLEISNKVDLKLQFGNYLLPEFEVPEGYD--- 298 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADF 363 A + LE + +G I + Y + + + R+ FELN I MKF+GYFLIV D+ Sbjct: 299 ---------ADSYLEKLIWEG-IGRKYPNLSPEIKDRVVFELNTIKNMKFAGYFLIVQDY 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +AK+N IPVGPGRGS AGS+ AYAL IT+++PL+ +LLFERFLNPDR MPD D DFC Sbjct: 349 INYAKRNGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDIDTDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+EVI Y++ +YG E+V QIITF SL AKAAL+DV R L +P+ + + + K PN Sbjct: 409 VERREEVINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKAFPNKL 468 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A+ S + D ++ I+Q+LEG YR HAAG+VI PL ++V Sbjct: 469 GMSIA-EALTTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYPLEEVV 527 Query: 544 PMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597 P+ + P VTQ++ +E GLIK D LGLK LT L ++ + +RGV++D Sbjct: 528 PLSTVAEKERPGSRSIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIERRRGVRID 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L IP++D TY LL TLGIFQLES+G+ + Q + ++I+AL++LYRPGP+ Sbjct: 588 LDEIPYNDANTYALLRKANTLGIFQLESTGITDLVAKSQVNNFDEIVALIALYRPGPMGE 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 ++ Y +RK+G++++ HP +P+LKET GV +YQEQVM I++++ G+S+ ++DVLR+ Sbjct: 648 GMLDEYLDRKSGRKQVTYPHPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDSDVLRK 707 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AM KK + M+K K +F+ GA K GI + +A ++FE L +F YGFNKSH+ AYA+I+YQ Sbjct: 708 AMAKKKADLMEKLKYQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYAIITYQ 767 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TA++K +Y +E+L A + + I K+ +AR+ I+I+ P V+ F V D+ Sbjct: 768 TAYLKANYTIEYLTALLASDHGKTTDIVKYINNAREMGIRILNPDVSESQASFNVIDDAT 827 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + L+A+KGVG T A I+EA DK F +L+DF +D++ +N++V E+L+ AGALD Sbjct: 828 IRFGLSAMKGVGETAANSIIEAR-DKAGNFKTLQDFALNIDTRLINKKVFEALIQAGALD 886 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDKITLEKFSVE-NSSV 950 FGY+R L +S+D+I +AQ E+ RTN+ + ++F + +F+ + L K ++E Sbjct: 887 SFGYTRKCLFESVDSILTFAQR-EQERTNEGQFSLFGVGESSFT--LNLPKDALEWEIDE 943 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + E+ + G Y SGHPLD Y+ L+ + E+ G+ + +A ++ SK K ++ Sbjct: 944 KLRREKAIAGLYLSGHPLDKYEKQLKSLRTIPIEKFDNLKSGSKVEVAGIISSKNIKLSK 1003 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 + + E E F Sbjct: 1004 RNEEFANFKLEDRTGEIECVAF 1025 >gi|159903240|ref|YP_001550584.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9211] gi|159888416|gb|ABX08630.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9211] Length = 1171 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1057 (38%), Positives = 618/1057 (58%), Gaps = 51/1057 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L HS YSLL+GA L ++ + A PAIA+TD ++ A+E + + GI+PI Sbjct: 3 FVPLHNHSDYSLLDGASQLPAMVSRAKALGFPAIALTDHGVMYGAIELLKLCKSEGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG ++ + + + P P +V+L GY+ L++L + +L + Sbjct: 63 IGNEMYV-------VNGSIEDPQPKKERRYHLVVLAKNDVGYRNLVKLTTISHLNGMRGR 115 Query: 128 SV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + R C+ L E EGLI+ T G I +A + VA+ +KK+FGD Y+ Sbjct: 116 GIFSRACIDKQLLETYKEGLIISTACLGGEIPQAILRDRIDVAKDVASWYKKVFGDDFYL 175 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H DR + + ++A + L+ATN++ +L+++D EAHD L+ V ++S++ Sbjct: 176 EIQDHGSVEDRIVNTGICRIAKELNIELIATNDAHYLTKDDVEAHDALLCVLTGKLISEE 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297 R R T YLK+ EM +FSD + EA+ NTV ++ + + +P+F Sbjct: 236 KRLRYTGTEYLKSEEEMGKLFSDHIESNIIQEAINNTVTVSEKVEEYNILGTYKMPQFPV 295 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + + + LR + GL RL ++ Y RL+ E+ +I +M F YF Sbjct: 296 PD----GGQSTDYLRKVSQDGLMTRLKLESLE--MIENKYINRLNSEIKIIEQMGFPDYF 349 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+V D+I++A++N+IPVGPGRGS AGS+ AY+L IT+IDP+ LLFERFLNP+R SMPD Sbjct: 350 LVVWDYIRFARENHIPVGPGRGSAAGSLVAYSLGITNIDPVTNGLLFERFLNPERKSMPD 409 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PYS DRL K Sbjct: 410 IDTDFCIERRGEVIDYVTKRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYSDADRLAK 469 Query: 478 LIPNDPAHPVSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 LIP P L Q I D++ FRE DP V + L+++ ++EG + HAAG+V Sbjct: 470 LIPVVRGKPAKLSQMIGDNTPSKDFREKYQNDPLVKKWLDMAIRIEGTNKTFGVHAAGVV 529 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592 I PL LVP+ R+ + +TQ+ M+ IE GL+K DFLGLK LT+++K++ + Sbjct: 530 IASDPLDNLVPLQRNNDGQI-ITQYFMEDIESLGLLKMDFLGLKNLTMIEKAVTLVEDSL 588 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 G K+DL + DD +TY LL+ GIFQLES+GMRQ ++ ++P +EDI ++++LYRP Sbjct: 589 GEKLDLDQLNMDDTKTYELLSKGDLEGIFQLESTGMRQIVKDLRPSSLEDISSILALYRP 648 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+D ++ + NRK+GKE+I H + P+L ET G+++YQEQ+M+IAQ L+GYSL +A Sbjct: 649 GPLDAGLIPKFINRKHGKEQIDFPHASLAPILGETYGIMLYQEQIMKIAQELAGYSLGQA 708 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM+K + F+ GASKNGI+ IA +FE + FA+Y FNKSH+ AY Sbjct: 709 DLLRRAMGKKKVAEMEKHRNFFLEGASKNGINSNIANELFEQMLLFAEYCFNKSHSTAYG 768 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +++QTA++K HYPV ++AA +T+ + +K++++ + I++MPP VN+ +DF Sbjct: 769 AVTFQTAYLKAHYPVAYMAALLTVNAGSSDKVQRYISNCNSMGIEVMPPDVNSSGIDFTP 828 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +N I + ++A+K +G R ++++ D F SL D C R+ LNRR LESL+ +G Sbjct: 829 NENHILFGMSAVKNLGDGAIRELIKSREEDGSFISLADLCDRIPPNTLNRRGLESLIHSG 888 Query: 890 ALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEK 942 ALD F +R QLL LD I ++A ++R + N+F + E T + T K Sbjct: 889 ALDSFDKKANRAQLLADLDLIIEWATSRARDRISGQGNLFDLASSSSENQTSNSLHTAPK 948 Query: 943 ---FSVENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIRGNNIR 996 S + + + E+ ++GFY S HPL + +P ++ + + E+ + + Sbjct: 949 AAPVSDYSPTEKLRLEKELIGFYLSDHPLKQLSEPAKLIAPISLGTLEDQRDK---SKVS 1005 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + AM+ + TRKG ++ + + EA FP Sbjct: 1006 VIAMINDMRVVTTRKGDKMAILQIEDLTGSCEAVVFP 1042 >gi|145640823|ref|ZP_01796405.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021] gi|145274337|gb|EDK14201.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.4-21] Length = 868 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/880 (42%), Positives = 541/880 (61%), Gaps = 38/880 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + K G F + LL EGY+ + L+S+ Y + Sbjct: 61 SGMKPIIGADVKV------KSPLCGDEYF----DLTLLAKNNEGYRNITLLLSKAY--QR 108 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G + I WL E +G+I+L+GG+ G + + + E + +++ F D Y Sbjct: 109 GYNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFY 167 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R + R Q ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 168 LALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDD 227 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ LP+F + Sbjct: 228 PKRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDL- 286 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFL Sbjct: 287 ----STEDFLVQKSKEGLEERLAFLFSDEKVRLEKRPKYDERLQVELDVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP ++ +A + + + A +D V L+++++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTLA-KAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---- 594 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 522 ITDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGK 581 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PRVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V N +RK+GKE++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 642 PLQSGMVDNFIDRKHGKEEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT E+DN +KI + + +++ PP +N Sbjct: 762 AAYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865 F V + I Y + AIKGVG ++ A + F + Sbjct: 822 HFSVSEQGEIVYGIGAIKGVGEGPIEALVTARNEGGFSKI 861 >gi|57167730|ref|ZP_00366870.1| DNA polymerase III, alpha subunit [Campylobacter coli RM2228] gi|57020852|gb|EAL57516.1| DNA polymerase III, alpha subunit [Campylobacter coli RM2228] Length = 1200 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1003 (39%), Positives = 598/1003 (59%), Gaps = 58/1003 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q + G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGNMFGAIDFYQTMRSEGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 IG + + +++ + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGLEAYLHNHEDIS-DKSSRQRF----HLCLYAKNEVGYQNLMYLSSQSYI--KGLYYYP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------QVAEKRLLTFKKLFG 179 RI L+E +EGLI + G ++ +S + A++ L +KK+FG Sbjct: 117 RINKKLLEE-HSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGYEAAKEAALWYKKVFG 175 Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 176 DDFYFEIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGK 235 Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295 ++ DR R + + Y+K+ ++M +F+D+PEA+ENT EIA +C+ L + P P F Sbjct: 236 KLNDPDRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIANKCNLELNLGNPTPPNFKF 295 Query: 296 ---IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDF 343 KE + EE E N V GLE RL I+K ++Y+ RL+ Sbjct: 296 TREYAKEYNISLPEEGKEFSFDNDDVVFDELCKKGLEERLKFVDISK---HEEYKTRLEV 352 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E+N+I +MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ AY+L ITD+DP+ +SLL Sbjct: 353 EINIIKKMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVAYSLKITDLDPIPYSLL 412 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L A+ +RDV R Sbjct: 413 FERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLARGVIRDVAR 472 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLY 522 M D L KLIP + ++L A + + + +E P + E ++ LEGL Sbjct: 473 VCDMSIPDADELAKLIPEEL--KITLDAAYEKEPKIKEFIERHPKGPEVWEYAKALEGLN 530 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLT 580 R+A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT Sbjct: 531 RNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLT 590 Query: 581 LLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 L+ ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 591 LINNAIKLIKKRYNKDIIWEAIDVNDAKVYKTIQSGNTLGIFQIESGGMQNLNARLKPER 650 Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 EDIIA+++LYRPGP+++ ++ + +RK+G +KI ++ +L+ T G+I+YQEQVMQ Sbjct: 651 FEDIIAVLALYRPGPMESGMLDDFIDRKHGLKKIEYPFDTLESVLEPTYGIIVYQEQVMQ 710 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 I Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A ++EL+ KFA Sbjct: 711 IVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKSEFADGAEKQGYDRVKAEELWELIVKFA 770 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++ Sbjct: 771 GYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLL 830 Query: 818 PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 PPSVN +F G + I Y L AIK VG +++EA F +++DF SR+ Sbjct: 831 PPSVNKAIREFSAVEQEDGKDAIVYGLGAIKSVGIPAVENLLEARERGEFKNIDDFLSRI 890 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 + K+N+R LESL+ AGA D FGY+R L ++DN+ + ++ + R N ++F ++ Sbjct: 891 EPTKINKRTLESLIKAGAFDEFGYTRKCLFDNMDNLTEGSKKMADARKNAASSLFGEDEL 950 Query: 933 TFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 T ++ + E+F V + E E+ +LG Y SGHPLD + Sbjct: 951 TVGLQVNIVAKNEEFEVME---KLEFEKEILGIYVSGHPLDRF 990 >gi|46446023|ref|YP_007388.1| DNA polymerase III subunit alpha [Candidatus Protochlamydia amoebophila UWE25] gi|46399664|emb|CAF23113.1| putative DNA polymerase III, alpha chain [Candidatus Protochlamydia amoebophila UWE25] Length = 1252 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1032 (38%), Positives = 600/1032 (58%), Gaps = 68/1032 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+ HS YS+L+ + S++++ + + +IA+TD NLF ++F + + Sbjct: 3 SSPFVHLRTHSQYSILDASASISDLSQRAFQEGMSSIALTDHGNLFGIVDFYKACKEVKV 62 Query: 68 QPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 + IIGC+L + L+ T G+ + LL GYQ L +L S Y+ +G Sbjct: 63 KSIIGCELYVAPGSRLEKTKVYGQR---AAYHLTLLAQNNRGYQNLAKLSSSGYI--EGF 117 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 L +EGLI L+G + + + + LL ++++F DR Y++L Sbjct: 118 YYYPRVDHDLLRKHSEGLICLSGSLGTLLAHEILQGNVKSIQDHLLWYQEVFKDRFYLDL 177 Query: 187 QRHRGYDR-------YRESQVVQ------------------LAYTHELPLVATNNSLFLS 221 QRH Y+ES +VQ L+ H +PLVATN+ ++ Sbjct: 178 QRHEMAAEDIQQDGLYQESWLVQQYQDYFNRQQKVNEALIALSREHHIPLVATNDVHYID 237 Query: 222 EEDYEAHDVLMAV--AHSTVVSQKD------------RPRVTPDH--YLKNRSEMVSIFS 265 ED+ AH++L+ + + +KD + + P H Y K+ +M +F Sbjct: 238 REDWRAHEILLNIQSGEPCEIWEKDAYGTPKFRIPNPKRQTYPSHEYYFKSSQQMEQLFK 297 Query: 266 DLPEALENTVEIARRCSFILQV---HAPI-LPRFIEK---ECDDIQKEEENELRNKAVAG 318 D+PEA+ NT +IA +C + H P+ LP +E E D+ +KE EN L G Sbjct: 298 DVPEAIINTQKIAEQCLVEIDFKTKHYPVYLPPSLENRPFEKDEQKKEVENYLWKLCEEG 357 Query: 319 LEVRLAQGAIAKG---YHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 + R +AK Y ++ R+RL++E+++I S Y LIV DFI WAK+N Sbjct: 358 ISNRYTIERLAKVQEIYPDRNPLDVVRERLNYEMSIIVPKGMSDYLLIVWDFINWAKRNG 417 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 IP+GPGRGSGAGS+ Y + ITDI+PLRF L FERF+NP+R+S PD D+D C DRR EVI Sbjct: 418 IPMGPGRGSGAGSIVLYLIGITDIEPLRFHLFFERFINPERISYPDIDVDICMDRRGEVI 477 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491 Y KYG + VAQIITFG+++AK AL+DVGR L +P S+V+ + KL+P D + +A Sbjct: 478 AYTLQKYGKDNVAQIITFGTMKAKMALKDVGRVLSVPLSKVNEIAKLVPEDLNITLD-KA 536 Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 + D R+ D V RL+++++KLEG R+ HAAGI+I PL+ L+P+ S Sbjct: 537 LEKDQDLRQLYENDEEVGRLIDLAKKLEGSIRNTGIHAAGIIISGVPLTNLIPICNSKDS 596 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYH 610 D+PVTQF+MK +E G++K DFLGLKTLT +Q ++ + A G ++D +P DD T+ Sbjct: 597 DIPVTQFSMKPVEAVGMLKVDFLGLKTLTAIQICVNAVKASTGKEIDWINLPLDDKPTFD 656 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670 LL TLGIFQLES GM+ + D E+IIA+ +LYRPGP+D I + NRK+G+E Sbjct: 657 LLNQGKTLGIFQLESGGMQDLARQLHLDRFEEIIAVGALYRPGPMDMIPSFINRKHGREA 716 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 I + HP + +L ET G+++YQEQVMQIA L+ +SL E DVLRRAMGKK ++M KQ+E Sbjct: 717 IENDHPWMKDILAETYGIMVYQEQVMQIASKLANFSLGEGDVLRRAMGKKDMDQMAKQRE 776 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 +F GA +N I ++ IF+ + KFA YGFNKSHAAAY +SY TA++K +YP E++A+ Sbjct: 777 KFRLGALENQIDNQTSMLIFDKMEKFAAYGFNKSHAAAYGYLSYVTAYLKANYPGEWMAS 836 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850 MT + D++ K+ KF ++ + NI ++PP +N F+ I +++ IKGVG Sbjct: 837 LMTCDRDDLSKVAKFIRECQSMNIPMLPPDINEAGEIFQATKQGIRFAMTGIKGVGAGVV 896 Query: 851 RHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 I++ + PF + +F R+D+KK+ ++V+ESLV AG+ D G++R L+ S+D + Sbjct: 897 EAIVQERQKRGPFKNFYEFFKRIDTKKVGKKVVESLVEAGSFDFTGWARDALVMSIDPMY 956 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR---FENEQRVLGFYFSGH 966 + + +K + ++FA +++ + V+N + R E+ +LGF+ +GH Sbjct: 957 ESSSKEQKEQAMGFMSLFAKMDDEMTNQFR-KPPEVKNKTSRQDLLRKEKALLGFFLTGH 1015 Query: 967 PLDVYKPILRKM 978 P+D YK IL+++ Sbjct: 1016 PMDEYKDILQRL 1027 >gi|255657348|ref|ZP_05402757.1| DNA polymerase III DnaE [Clostridium difficile QCD-23m63] gi|296451837|ref|ZP_06893556.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile NAP08] gi|296879767|ref|ZP_06903741.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile NAP07] gi|296259316|gb|EFH06192.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile NAP08] gi|296429238|gb|EFH15111.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile NAP07] Length = 1189 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1059 (36%), Positives = 612/1059 (57%), Gaps = 55/1059 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G + ++ + +IAITD +F ++F + A GI+PI Sbjct: 5 FAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIKEGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + L+ + + +VLL EGY+ LI++VS Y+ + R Sbjct: 65 IGCEVYTAAR-GLRDKDPNYDKYQG--HLVLLAKNMEGYKNLIKIVSTSYV-EGFYYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189 + + L++ +G+I L+ +G + RA + + A++ ++ +FG+ ++ +Q H Sbjct: 121 VDMEELKK-HNKGIIALSACLAGDVARALMNRNYEKAKQFAFDYRDIFGEENFFLEIQDH 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ S +V+L+ +PLVATN+ ++++ED + HDVLM + ++ +R R Sbjct: 180 NLPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLNDPNRMRF 239 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+R EM +F EA++NTV+IA C+ + LP++ E Sbjct: 240 GSDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEG----YTP 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E LR GL+ R + + +RL++EL+VI +M + YFLIV DFI ++ Sbjct: 296 ETYLRELCFNGLKERYDN-------PSDEILERLNYELDVIEKMGYVEYFLIVWDFINFS 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DIDFC +RR Sbjct: 349 KENNIIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDIDFCYERR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV+ KYG + VAQIITFG++ AKAA+RDVGR L + Y++VD++ K IP + Sbjct: 409 EEVIDYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKIAKEIPFALGMTI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + +E DP ++ IS+++EG+ RHASTHAAG+VI P+ + VP+Y+ Sbjct: 469 D-KALDTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDEYVPLYK 527 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------KVDLSLI 601 D TQF M +E+ GL+K DFLGL+TLT+++ +LD + + V K+D S + Sbjct: 528 --HQDAITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEKIDFSKM 585 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 +DD + Y +L++ TLG+FQLES+GMR ++ ++PD EDI+A +SL+RPGP+D+I Y Sbjct: 586 DYDDPKVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPMDSIPAY 645 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K+ + + +H + P+++ T G ++YQEQVMQ+ + L GYS +D++RRAM KK Sbjct: 646 IKNKSNPKDVTYLHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRRAMSKKK 705 Query: 722 KEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 + M+++++ F I+G +NG+ + IA IF+ + FA Y FNKSHAAAY Sbjct: 706 MDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNKSHAAAY 765 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 V++Y+TA++KT+YPVEF+AA +T M N +K+ ++ ++ + I ++PP +N F Sbjct: 766 GVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINKSFSKFS 825 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V + I + LAA+K VG +I+ E ++ F L D R+D K N+RV+ESL+ Sbjct: 826 VEGDNIRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVIESLIKC 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKF 943 GA D +R L+ +++ + K ++F + E F +L K Sbjct: 886 GAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQIYSLPKR 945 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM---------GIKGYEESVATIRGNN 994 R E+ VLG Y SGHPL ++ L++ +K EES + + Sbjct: 946 QEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYLQMNETD 1005 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+V+K K T++ + ++ + E FP Sbjct: 1006 VIMGGMIVTKTIKTTKRNEIMAFLELEDLYGAIEIVVFP 1044 >gi|158521896|ref|YP_001529766.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3] gi|158510722|gb|ABW67689.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3] Length = 1182 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1044 (37%), Positives = 599/1044 (57%), Gaps = 39/1044 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 P FVHL VH++YSLL+G + + ++ + A+AITD +F + F ++A AGI Sbjct: 7 GPDFVHLHVHTAYSLLDGIIRIEALMKRAVEYGMGAVAITDHGTMFGVVSFYKEAVKAGI 66 Query: 68 QPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +P+IGC+ + + D M + G + +VLL T EGY+ L L S + L Sbjct: 67 KPVIGCECYVAPRSITDRTPMDHDG------LSHLVLLAETMEGYRNLCHLAS-IASLKG 119 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LY 183 RI L++ G GLI L+ G + + +++ A++ +++ G+ + Sbjct: 120 FYHKPRIDKELLKQYGN-GLIGLSACLKGEVAQRLLEGNTEAADRAARFYQEALGENSFF 178 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q + ++ R + + +++ +PLV TN+ +L ED+ HD+ + + + Sbjct: 179 LEVQNNGIPEQTRLNAALREMSDRLSIPLVGTNDCHYLDREDHNIHDLSLCLQTGKTIHD 238 Query: 243 KDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPILPRFIEK 298 DR R D K + EM + P A NTV IA RC+ L +H P+ K Sbjct: 239 ADRFRFETDQLNFKPKHEMCTFLEPFPNAATNTVAIADRCNVELDFKTLHFPVFATPPGK 298 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAK---GYHAQDYRQRLDFELNVIARMKFSG 355 D + +E E G RL A+A+ + + Y +RL+FEL+VI M F Sbjct: 299 TVDQLFEETVRE-------GFARRLK--AVARKNPDFDREAYDRRLEFELSVITDMGFPS 349 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI AK+N IP+GPGRGS AGS+ +YA+ ITD+DP+ LLFERFLNP+R SM Sbjct: 350 YFLIVADFIAHAKENGIPIGPGRGSAAGSIVSYAMGITDLDPIEHGLLFERFLNPERKSM 409 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 PD D+D C R+ V Y+ KYG + VAQIITFGS++++A +RDVGR + +P S VDR Sbjct: 410 PDIDVDICIIGRERVYHYLVEKYGGSDYVAQIITFGSMKSRAVIRDVGRVMGIPLSDVDR 469 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 + KLIP + + +L D + ++R P L+ + LEG+ RHASTHAAG+VI Sbjct: 470 IAKLIPMNKSLDEALAEEPDLKKLVDSR---PDFAELVAAGRALEGMPRHASTHAAGVVI 526 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 GD+PL++ +P+Y V+ + +TQ++MK +E GL+K D LGL+ LT++ +L L Q+G Sbjct: 527 GDKPLTEYLPLYA-VKENEALTQYDMKCVEAIGLVKLDLLGLRNLTVIADTLKILQQQGR 585 Query: 595 KV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +V D+S + D +TY LL T G+FQLES+GM++ L ++P DI ALV+LYRPG Sbjct: 586 QVPDMSHLDLADEKTYQLLCAGKTTGVFQLESTGMKELLLKLKPTTFADITALVALYRPG 645 Query: 654 PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+ + +V + ++G++++ + P ++P+LKET GVI+YQEQVMQIAQ ++GY++ AD Sbjct: 646 PMGSGMLVDFVECRHGRKRVEYLIPELEPILKETYGVIVYQEQVMQIAQAVAGYTMGTAD 705 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 LR+AMGKKI +M + + FI GA GI K A ++E + F +YGFNKSH+AAYA+ Sbjct: 706 DLRKAMGKKIAAKMAEHQATFIEGALARGIDKAKAETLYEQIKFFGEYGFNKSHSAAYAL 765 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +++QTA++K H+PVE +AA +T + + KF + R +I+++PP +N V F V Sbjct: 766 VAFQTAYLKAHFPVELMAALLTSSTNKTIDVVKFIAECRALDIEVLPPDINESEVAFSVV 825 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 +R+ + L A+K VG I+E A+ F S+ D C RV K+N++VLESLV GA Sbjct: 826 GDRLRFGLLAVKNVGEGAIEAIVEERRANGRFVSIFDLCERVPLTKVNKKVLESLVKCGA 885 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSS 949 LD G R Q+ L++ + Q V++ + + ++F + + TL + Sbjct: 886 LDSTGAGRAQMTAVLEDALAHGQTVQREKNDSQMSLFDMPGADAALNAPTLPDMPEWSDR 945 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 R E+ VLGFY SGHPL Y+ +LRK +N+ + + +K T Sbjct: 946 QRLAFEKEVLGFYVSGHPLAAYRDVLRKYANTDALTLKEIADQSNVIIGGGITVVNRKTT 1005 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 ++G ++ VT + E FP Sbjct: 1006 KRGDQMAIVTIEDMYGTVEVVVFP 1029 >gi|260434289|ref|ZP_05788259.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8109] gi|260412163|gb|EEX05459.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8109] Length = 1172 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1067 (37%), Positives = 600/1067 (56%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PAIA+TD ++ A+E + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPAMVERARQLGMPAIALTDHGVMYGAIELLKLCQGTDLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P +V+L A GY+ L++L S +L Sbjct: 62 IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNATGYRNLVKLTSISHLRGMRG 114 Query: 127 QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + R C+ L + +EGLI+ T G I +A VA K ++++F D Y Sbjct: 115 RGIFSRACIDKELLKQHSEGLIIATACLGGEIAQAILRGRPDVARKVAAWYQEVFADDYY 174 Query: 184 VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR +VV++A + +VATN++ +LS++D EAHD L+ V +++ Sbjct: 175 LEIQDHGSPEDRIVNVEVVKIAKELGIQIVATNDAHYLSKQDVEAHDALLCVLTGKLITD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R T Y+K EM +F D + EA+ NTV++A + + +PRF Sbjct: 235 EKRLRYTGTEYIKTEEEMDLLFGDHLEPEVVQEAIANTVKVAEKVEPYDILGRYQMPRFP 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E + LR GL RL A DY +R+ EL ++ +M F Y Sbjct: 295 IPEA----HTPVSYLREVTEQGLRDRLELSPEAP--LPDDYAERMAHELKIMEQMGFPTY 348 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+V D+I++A++ NIPVGPGRGS AGS+ AY L IT+IDP+ LLFERFLNP+R SMP Sbjct: 349 FLVVWDYIRFARERNIPVGPGRGSAAGSLVAYCLGITNIDPITNCLLFERFLNPERKSMP 408 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL Sbjct: 409 DIDTDFCIERRSEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468 Query: 477 KLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 KLIP P L+A+ + + FRE ADP+V R ++++ ++EG + HAAG+ Sbjct: 469 KLIPVVRGKPAKLKAMIGEESPNPEFREKYEADPTVKRWVDMAMRIEGTNKTFGVHAAGV 528 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQ 591 VI PL +LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT+++K+L+ + Sbjct: 529 VIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVEVS 587 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G +VD +P D ET+ LL GIFQLESSGMRQ + ++P +EDI ++++LYR Sbjct: 588 SGTRVDPDKLPPQDEETFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYR 647 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+D ++ + NRK+G+E I H +++P+L ET G+++YQEQ+M+IAQ L+GYSL + Sbjct: 648 PGPLDAGLIPKFINRKHGREAIDFAHAILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQ 707 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EM K + F+ GA + G+ + +A +F+ + FA+Y FNKSH+ AY Sbjct: 708 ADLLRRAMGKKKVSEMQKHRGIFVKGAGERGVDEKVADELFDQMVLFAEYCFNKSHSTAY 767 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 ++YQTA++K HYPV ++AA +T+ +K++++ + I++MPP VN DF Sbjct: 768 GAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDVNASLTDFT 827 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +RI + L+A++ +G R ++ A +D PF SL D C R+ S LNRR LESL+ Sbjct: 828 PNGDRILFGLSAVRNLGDGAIRQLIAARDSDGPFRSLADLCDRIPSSVLNRRGLESLIHC 887 Query: 889 GALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----------------AH 929 GALD +R QL+ LD + +A K+R + N+F A Sbjct: 888 GALDAMDPQANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAPAADADGPADLSHAP 947 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEES 986 + D EK +E ++GFY S HPL P +L +G+ EE Sbjct: 948 KAAPVPDYPPTEKLRLEKD---------LVGFYLSDHPLKQLTPSSKLLAPIGLGSLEEQ 998 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + I AMV +Q TRKG R+ + + EA FP Sbjct: 999 PDKAKVSAI---AMVAEMRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042 >gi|305433235|ref|ZP_07402391.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter coli JV20] gi|304443936|gb|EFM36593.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter coli JV20] Length = 1200 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1003 (39%), Positives = 598/1003 (59%), Gaps = 58/1003 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q + G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGNMFGAIDFYQTMRSEGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 IG + + +++ + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGLEAYLHNHEDIS-DKSSRQRF----HLCLYAKNEVGYQNLMYLSSQSYI--KGLYYYP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------QVAEKRLLTFKKLFG 179 RI L+E +EGLI + G ++ +S + A++ L +KK+FG Sbjct: 117 RINKKLLEE-HSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGYEAAKEAALWYKKVFG 175 Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 176 DDFYFEIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGK 235 Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295 ++ DR R + + Y+K+ ++M +F+D+PEA+ENT EIA +C+ L + P P F Sbjct: 236 KLNDPDRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIANKCNLELNLGNPTPPNFKF 295 Query: 296 ---IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDF 343 KE + EE E N V GLE RL I+K ++Y+ RL+ Sbjct: 296 TREYAKEYNISLPEEGKEFSFDNDDVVFDELCKKGLEERLKFVDISK---HEEYKTRLEV 352 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E+N+I +MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ AY+L ITD+DP+ +SLL Sbjct: 353 EINIIKKMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVAYSLKITDLDPIPYSLL 412 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L A+ +RDV R Sbjct: 413 FERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLARGVIRDVAR 472 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLY 522 M D L KLIP + ++L A + + + +E P + E ++ LEGL Sbjct: 473 VCDMSIPDADELAKLIPEEL--KITLDAAYEKEPKIKEFIERHPKGPEVWEYAKALEGLN 530 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLT 580 R+A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT Sbjct: 531 RNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLT 590 Query: 581 LLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 L+ ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 591 LINNAIKLIKKRYNKDIIWEAIDVNDAKVYKTIQSGNTLGIFQIESGGMQNLNARLKPER 650 Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 EDIIA+++LYRPGP+++ ++ + +RK+G +KI ++ +L+ T G+I+YQEQVMQ Sbjct: 651 FEDIIAVLALYRPGPMESGMLDDFIDRKHGLKKIEYPFDTLESVLEPTYGIIVYQEQVMQ 710 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 I Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A ++EL+ KFA Sbjct: 711 IVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKSEFADGAEKQGYDRVKAEELWELIVKFA 770 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++ Sbjct: 771 GYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLL 830 Query: 818 PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 PPSVN +F G + I Y L AIK VG +++EA F +++DF SR+ Sbjct: 831 PPSVNKAIREFSAVEQEDGKDAIVYGLGAIKSVGIPAVENLLEARERGEFKNIDDFLSRI 890 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 + K+N+R LESL+ AGA D FGY+R L ++DN+ + ++ + R N ++F ++ Sbjct: 891 EPTKINKRTLESLIKAGAFDEFGYTRKCLFDNMDNLTEGSKKMADARKNAASSLFGEDEL 950 Query: 933 TFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 T ++ + E+F V + E E+ +LG Y SGHPLD + Sbjct: 951 TVGLQVNIVAKNEEFEVME---KLEFEKEILGIYVSGHPLDRF 990 >gi|257460063|ref|ZP_05625167.1| DNA polymerase III, alpha subunit [Campylobacter gracilis RM3268] gi|257442504|gb|EEV17643.1| DNA polymerase III, alpha subunit [Campylobacter gracilis RM3268] Length = 1381 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1007 (38%), Positives = 598/1007 (59%), Gaps = 60/1007 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + HL +H+ YSLL+GA ++ + + + + A AITD N+F A++F Q GI+PI Sbjct: 4 YTHLHLHTEYSLLDGANKVSELAELLQSRGTKACAITDHGNMFGAIDFYQTMKKHGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D++ G ++LL GY+ L+ L SR +L D R Sbjct: 64 IGIETYLHNHDDI-----GDKSDRQRYHLILLAKNETGYKNLMYLSSRAFL-DGFYYYPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-----------VAEKRLLTFKKLFG 179 I L+E +EGLI + +G ++ F N S+ A+K L +K++FG Sbjct: 118 INKKILKE-HSEGLICSSACLAGEVE--FHLNRSERNLKRGAGGYEAAKKAALEYKEIFG 174 Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y+ + RH G + +++L+ + ++ATN++ + ++ +AHDV ++ Sbjct: 175 EDFYLEIMRHGIGEQLNVDKDLIRLSREIGVKIIATNDAHYSRKDRAKAHDVYQCISMGK 234 Query: 239 VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC----SFILQVHAPILP 293 ++ DR + V + Y+K+ EM +F+D+PE +ENT EI ++C +F + +AP P Sbjct: 235 TINDGDRLKHVVSEFYVKSDEEMRRLFADIPEVIENTAEIVQKCNLKFAFDEKDYAPTPP 294 Query: 294 RF---IEKEC----DDIQKEEENELRNK-------AVAGLEVRLAQGAIAKGYHAQDYRQ 339 F IE Q +E N GL+ RL AK + YR+ Sbjct: 295 NFKFTIEYAARLGLSLPQPDERYSFANDDFLFDHLCREGLKERLKFIDPAK---HEIYRE 351 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RL+ EL +I M FSGY +IV DFI WAK ++IPVGPGRGS AGS+ AYAL ITD+DP+ Sbjct: 352 RLEKELAIIKNMHFSGYMVIVQDFINWAKDHDIPVGPGRGSAAGSICAYALRITDLDPIP 411 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 ++LLFERFLNP R+SMPD D+DFCQ RR EVI YV ++YG VAQ+ TFG L A+ +R Sbjct: 412 YNLLFERFLNPSRISMPDIDVDFCQARRGEVIDYVIDQYGKFNVAQVATFGKLLARGVIR 471 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 DV R MP SQ D++ KLIP+ ++ QA + + +E ADP ++ E + LE Sbjct: 472 DVARVCDMPLSQADKMAKLIPDKLGITLT-QAYDAEPKLKEFIDADPIAQQVWEFALGLE 530 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLK 577 GL R+A HAAG+VI + PL P+++ + + VTQ+ ++E LIKFDFLGLK Sbjct: 531 GLNRNAGMHAAGVVISNEPLWNKAPLFKQDKGEDARLVTQYTKNYLEDVDLIKFDFLGLK 590 Query: 578 TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 L ++ + + +R G + I F+D +TY + + TLGIFQ+E +GM+ ++ Sbjct: 591 NLDVIDNAAKLVKRRYGRDIVWEEIDFNDRKTYETIQSGNTLGIFQIEGAGMQDLAMNLR 650 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 PD EDIIA++SLYRPGP+D I + K+G+ K I P + +L+ T G+I+YQEQVM Sbjct: 651 PDRFEDIIAMISLYRPGPMDLIPDFIRIKHGELKASYIFPELKEILEPTYGIIVYQEQVM 710 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 QI Q + G+SL +AD++RRAMGKK ++++ +E+++SGA + G A +F+L+ KF Sbjct: 711 QIVQKVGGFSLGDADLVRRAMGKKDEKKLAHMREQYLSGAKELGFDVAKADELFDLIMKF 770 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A YGFNKSHAAAY++I++QTA++KT+YP EF+AA +T E N +KI K+ +A + I + Sbjct: 771 ASYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEEGNTDKISKYIDEASRLGIGL 830 Query: 817 MPPSVNTPCVDFKVGDNR-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869 +PPS+N F V D+ I Y L AIKGVG +I+E ++ F S++DF Sbjct: 831 LPPSINQSLRGFSVVDDENSKSGTSIIYGLGAIKGVGAAAIENILELQSEAKFQSIDDFA 890 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 SRVD+ ++N++V+ESL++AGA+DC G SR+ ++Q+++NI + + + + + + ++F Sbjct: 891 SRVDNFRVNKKVIESLIYAGAMDCLGKSRLAMIQNMENILEVMKKITEIKKDAASSLFGE 950 Query: 930 EK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 ++ G + +K + ++F EQ+ +G Y SGHPLD YK Sbjct: 951 DEDMTSGMSVSFVDTDKEFPQGEILKF--EQQTVGVYLSGHPLDDYK 995 >gi|238018709|ref|ZP_04599135.1| hypothetical protein VEIDISOL_00553 [Veillonella dispar ATCC 17748] gi|237865180|gb|EEP66470.1| hypothetical protein VEIDISOL_00553 [Veillonella dispar ATCC 17748] Length = 1135 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/1012 (37%), Positives = 614/1012 (60%), Gaps = 33/1012 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + QPA+AITD N+++A+ F ++ + GI+PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECVSQGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + ++ Q + ++LL T EGY+ L+++VS+ + R Sbjct: 64 IGCEVYV--TEGSRLDKQEGRSRERLKHLILLAETMEGYRNLVKIVSKAST-EGFNYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L++ ++G+I L+ G I + ++ + A++ + + + +G D ++ +Q H Sbjct: 121 ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + + ++++L+ + L +VA+N+ ++ +ED +A D+ + ++ ++ DR + Sbjct: 180 GLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +F +P A+ENT++IA RC+ LP F D+ + E Sbjct: 240 PNDEFYLKSGDEMAELFGHIPGAMENTLKIADRCNVEFNFDEHHLPHF------DVPEGE 293 Query: 308 ENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ + V E+ RL G +++ ++RLD+EL+VI M F YFLIV D++++ Sbjct: 294 TSKTYLRKVCEREIPRLY------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRY 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++ Sbjct: 348 AREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEK 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R + I YV KYG ERV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ Sbjct: 408 RGQAIEYVTRKYGQERVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELG-- 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 ++L + ADP+V L + +KLEG+ R++STHAAG+VI PL VP+ Sbjct: 466 ITLDKALQGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPV- 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 ++ D VTQ++ IE+ GL+K DFLGL+TLT++ +L + A RG+ +DL IP DD Sbjct: 525 QNANDDGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 +LT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + +V + + Sbjct: 585 KAACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFID 644 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK + Sbjct: 645 RRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKES 704 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + Q+E FI G+ NGI ++IA +F+LL FA YGFNKSH+AAYA I+YQTA++K HY Sbjct: 705 VLKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHY 764 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 EF+AA+MT M N++K+ + ++ N++++ P +N F V + I + L IK Sbjct: 765 FPEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQGDAIRFGLGGIK 824 Query: 844 GVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG R I E + + + DFC RVD+K +N+R+LESL+ GA+D F +R QLL Sbjct: 825 NVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRNQLL 884 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 ++ Q +K+ ++F E F +E S ++ + ++E+ G Sbjct: 885 HMYESAQAVGAKEQKDAAMGTMSLFGDIEESVDFIPVPNVEDLSEDD---KLKDEKEYTG 941 Query: 961 FYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 FY +GHPL Y L + + E+ G I ++ +K + TR+ Sbjct: 942 FYITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKTDRMTRR 993 >gi|78212689|ref|YP_381468.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9605] gi|78197148|gb|ABB34913.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9605] Length = 1172 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1067 (37%), Positives = 601/1067 (56%), Gaps = 69/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PAIA+TD ++ A+E + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPAMVEEAKQLGMPAIALTDHGVMYGAIELLKLCQGTDLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P +V+L A GY+ L++L S +L Sbjct: 62 IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNATGYRNLVKLTSISHLRGMRG 114 Query: 127 QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + R C+ L + +EGLI+ T G I +A VA K ++++FGD Y Sbjct: 115 RGIFSRACIDKELLKQHSEGLIIATACLGGEIAQAILRGRPDVARKVAAWYQEVFGDDYY 174 Query: 184 VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR ++V++A + +VATN++ +LS++D EAHD L+ V +++ Sbjct: 175 LEIQDHGSPEDRIVNVEIVKIAKELGIQIVATNDAHYLSKQDVEAHDALLCVLTGKLITD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R T Y+K EM +F D + EA+ NTV++A + + +PRF Sbjct: 235 EKRLRYTGTEYIKTEEEMGLLFGDHLEPEVVQEAIANTVKVAEKVEPYDILGRYQMPRFP 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E + LR GL RL A DY +R+ EL ++ +M F Y Sbjct: 295 IPE----GHTPVSYLREVTEQGLRDRLELSPEAS--LPDDYAERMAHELKIMEQMGFPTY 348 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+V D+I++A++ NIPVGPGRGS AGS+ AY L IT+IDP+ LLFERFLNP+R SMP Sbjct: 349 FLVVWDYIRFAREQNIPVGPGRGSAAGSLVAYCLGITNIDPITNCLLFERFLNPERKSMP 408 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL Sbjct: 409 DIDTDFCIERRGEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468 Query: 477 KLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 KLIP P L+A+ + + FRE ADP+V R ++++ ++EG + HAAG+ Sbjct: 469 KLIPVVRGKPAKLKAMIGEESPNPEFREKYEADPTVKRWVDMAMRIEGTNKTFGVHAAGV 528 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQ 591 VI PL +LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT+++K+L+ + Sbjct: 529 VIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVEVS 587 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G +VD +P D T+ LL GIFQLESSGMRQ + ++P +EDI ++++LYR Sbjct: 588 SGTRVDPDKLPPQDEATFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYR 647 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+D ++ + NRK+G+E I H +++P+L ET G+++YQEQ+M+IAQ L+GYSL + Sbjct: 648 PGPLDAGLIPKFINRKHGREAIDFAHAILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQ 707 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EM K + F+ GA + G+ + +A +F+ + FA+Y FNKSH+ AY Sbjct: 708 ADLLRRAMGKKKVSEMQKHRGIFVQGAGERGVDEKVADELFDQMVLFAEYCFNKSHSTAY 767 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 ++YQTA++K HYPV ++AA +T+ +K++++ + I++MPP VN DF Sbjct: 768 GAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDVNASLTDFT 827 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +RI + L+A++ +G R ++ A +D PF SL D C R+ S LNRR LESLV Sbjct: 828 PNGDRILFGLSAVRNLGDGAIRQLIAARDSDGPFRSLADLCDRIPSSVLNRRGLESLVHC 887 Query: 889 GALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----------------AH 929 GALD +R QL+ LD + +A K+R + N+F A Sbjct: 888 GALDAMDPQANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAPAADADGPADLSHAP 947 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEES 986 + +D EK +E ++GFY S HPL P +L +G+ EE Sbjct: 948 KAAPVTDYPPTEKLRLEKD---------LVGFYLSDHPLKQLTPSSKLLAPIGLGSLEEQ 998 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + I AMV +Q TRKG R+ + + EA FP Sbjct: 999 PDKAKVSAI---AMVAEMRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042 >gi|295706863|ref|YP_003599938.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319] gi|294804522|gb|ADF41588.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319] Length = 1116 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1030 (37%), Positives = 610/1030 (59%), Gaps = 47/1030 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ+ SSYSLL ++ ++ +++ AIA+TD N ++ + F + AGI+PI Sbjct: 3 FVHLQLQSSYSLLSSSVRIHELVETAKKMNYEAIALTDENVMYGVIPFYKACVKAGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L I + + + +P +VLL +GY+ L++L S L Q K+ Sbjct: 63 IGLTLSILEHE------ESERAYP----LVLLAENDKGYENLLKLSS----LVQTKEKHG 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + WL + GLI +T G +G ++ N Q A++ L FKK++ LY+++QRH Sbjct: 109 VNKKWLHHY-SGGLIAITPGVTGEVETLLAENKFQDAKRVLQFFKKVYSQSLYISIQRHG 167 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPRVT 249 + + Q+ +LA +PLVATN +L +ED +A++ L+A+ + S ++ + Sbjct: 168 QDETFINQQLTELAAEENIPLVATNQVKYLKKEDRDAYECLVAIRDGEKLHSDEEVKSKS 227 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 ++Y K+ EM +F D +E +++IARRC + + +P++ Sbjct: 228 SEYYFKSPDEMEDLFHDQHFLIEESIKIARRCELEISLGVMSIPKYPVPPS----VTSST 283 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR GL+ R+ + Y +RLD+ELN+I M+FS YFLIV DF+ +A + Sbjct: 284 YLRTLCEKGLQERVQ-------VITEQYEERLDYELNIIENMRFSDYFLIVWDFMNYAHE 336 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 + I GPGRGS AGS+ +YAL IT++DP++ LLFERFLNP+R+SMPD DIDF ++RD+ Sbjct: 337 HGILTGPGRGSAAGSLVSYALRITNVDPIQHQLLFERFLNPERISMPDIDIDFPDNKRDQ 396 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+YV KYG VAQIITFG+L AKAA+RDVGR + ++++ K IP P +L Sbjct: 397 VIQYVAQKYGGLHVAQIITFGTLAAKAAVRDVGRVMGFDQEALNKMSKAIPTKPG--TTL 454 Query: 490 QAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 ++ DSR + L++ + I+ K+EGL RH STHAAG+VI ++PL+Q V + ++ Sbjct: 455 KSALRDSRVLQDYLSENEARKQWYNIAMKIEGLPRHTSTHAAGVVISEKPLTQSVAV-QE 513 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D+ +TQ+ M+ ++ GL+K DFLGL+ LT+L L + + K+ LS IPF+D + Sbjct: 514 GHDDVYLTQYPMEALQDVGLLKMDFLGLRNLTILDHILKKIERDMNRKLSLSHIPFNDQK 573 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL+ T GIFQLES GMR+ L+ ++P +EDI+A+ +LYRPGP++NI Y RK+G Sbjct: 574 TFELLSKGDTTGIFQLESDGMRRVLQQLKPTELEDIVAVNALYRPGPMENIPTYIKRKHG 633 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 EK++ HP + +L+ T GVI+YQEQ+MQIA ++G+SL EAD+LRRA+ KK + +D+ Sbjct: 634 VEKVIYDHPTLKDILQSTHGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKERAVLDR 693 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ FI G+ K G ++A +++L+ +FADYGFN+SHA AY++++YQ A++K HYP++F Sbjct: 694 ERAHFIQGSKKKGYDLSVANRVYDLIVRFADYGFNRSHAVAYSMVAYQLAYLKAHYPLQF 753 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 +A +T + N KI ++ + ++ IQ++PPS+N F V I YSLAAIK +G Sbjct: 754 FSALLTSVIGNEGKIAQYINELKRNKIQVLPPSINKSMYSFNVEGESIRYSLAAIKHIGA 813 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + I E K F+ L DFC+RV K +N++ LE+L+ +G D FG +R LL ++D Sbjct: 814 AAMQEITEERKKKRFEDLFDFCARVSQKAVNKKGLEALILSGGFDEFGENRATLLATIDV 873 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN----EQRVLGFYF 963 ++A V + F D+ +L+ +E ++ E+ E+ +LGFY Sbjct: 874 AFEHASLV-----------LPDDDFGFGDEFSLKPKYMEKEELKIEDRLQYEKDMLGFYL 922 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 S HP Y+ + + + G + L V+ + +T+KG ++ ++ ++ Sbjct: 923 SSHPASQYEALNSFYSVVSLHDMKEYASGKAVSLLVFVLEIRVIRTKKGEQMAFLRITDE 982 Query: 1024 AKEYEANFFP 1033 + E E FP Sbjct: 983 SGEGEVVAFP 992 >gi|148653037|ref|YP_001280130.1| DNA polymerase III subunit alpha [Psychrobacter sp. PRwf-1] gi|148572121|gb|ABQ94180.1| DNA polymerase III, alpha subunit [Psychrobacter sp. PRwf-1] Length = 1203 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1012 (38%), Positives = 593/1012 (58%), Gaps = 80/1012 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +HS +S+ + + + ++ AAD Q A+A+TD +NL++ ++F + A I+P Sbjct: 2 AFVHLGIHSEFSITDSIIRIKPMVKAAAADGQMALALTDLSNLYATVKFYRACLDAAIKP 61 Query: 70 IIGCQLDIDMQDN----LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 IIG ++ +D + L M N+G + S+ R +V++ +LLD Sbjct: 62 IIGAEIILDDEHTRLTLLAMNNEGYQSITRIVSLGFTDGRMNPDNRGTPIVNKAHLLDN- 120 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + G+I+L S + +A + + + + ++ +FGDRLY Sbjct: 121 ---------------SAGVIVLFTEKSD-VGQALLGANPERGHQLISEYQAVFGDRLYFA 164 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 ++R R + Q + H + VA N+ FL EED++AH+ + +A S V++ + Sbjct: 165 IKRTKRALEDTFIEQAILAGQRHGIATVAHNDVRFLEEEDFDAHEARVCIASSHVLADPN 224 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP + + YLK +++M +FSD+P+ ++NTV +A+RC+ L + +LP F E + I Sbjct: 225 RPHDYSSEQYLKTQAQMTELFSDIPQVVQNTVILAQRCNVTLTLGINVLPEFPVPEGETI 284 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-----------YRQRLDFELNVIARMK 352 E+ R ++ GLE RL K Y + Y +RL+ ELN+I M Sbjct: 285 ----ESFFRAESQRGLEARLD-----KLYPVSERDETWPEIRRPYDERLEHELNIILEMG 335 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R Sbjct: 336 FPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPLHYDLLFERFLNPER 395 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC + RD VI YV ++YG E V+QIITFG++ AKA +RDV R Y Sbjct: 396 VSMPDFDIDFCIEGRDRVIEYVASQYGREAVSQIITFGTMAAKAVVRDVARVQSKSYGLA 455 Query: 473 DRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADP------SVDRLLEISQKLEGLYRHA 525 D++ KLIP P +SL+ A+ ++ + ++ L++P + + E++ KLEG+ R+ Sbjct: 456 DKISKLIPKTPG--ISLKDALLEEPQLKDL-LSNPDNMDYEDANEIWEMAIKLEGITRNV 512 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 HA G++I ++ +Y D V+QF+ +E GL+KFDFLGL+ LT++ + Sbjct: 513 GKHAGGVLIAPNKITDFSAIYCDEEGHR-VSQFDKDDVESVGLVKFDFLGLRNLTVINAA 571 Query: 586 LDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + + +R + ++L +P DD Y LL T +FQLESSGM++ L +QP I Sbjct: 572 VKNINERRARENKPALELEDLPLDDTNAYKLLQDAKTTAVFQLESSGMKKYLAKLQPTNI 631 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 ED+IA+ +LYRPGP+D +V Y +RK+G+E++V HP ++P+L+ T GVI+YQEQVMQI Sbjct: 632 EDVIAMCALYRPGPLDAGMVEMYIDRKHGREEVVYDHPNLEPILENTNGVIVYQEQVMQI 691 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 +Q+++GYSL AD+LRRAMGKK EEM KQ++ F++GA+ GI I+ +F+L+ KFA Sbjct: 692 SQVMAGYSLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDPVISGGVFDLMEKFAG 751 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSH+AAY V++YQTA++K +YP EF+AA +T +M+N + + F D R+ F++ + Sbjct: 752 YGFNKSHSAAYGVLAYQTAYLKYYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFDLSVD 811 Query: 818 PPSVNTPCVDFKVGD--NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDS 874 PSVN F V D I Y L AIKGVG I++A F L DFC RVD Sbjct: 812 NPSVNRSEWHF-VADTPTNIIYGLGAIKGVGEGAVDSIVQARRQGGKFTDLYDFCRRVDI 870 Query: 875 KKLNRRVLESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTN 921 KK+N+R LE+L+ +G D F + R L+ L + + A+ +N Sbjct: 871 KKVNKRTLEALIKSGCFDDFAITQRPDLAADERHQIRGALMAQLPSAVQAAEQERQNNEM 930 Query: 922 KHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 ++F+ + T + + + + R + E+ LG Y +GHPLD Y+ Sbjct: 931 GMMDLFSEVDNATTAPPLPTDSGLIWGDKHRLKAEKDTLGLYLTGHPLDQYR 982 >gi|307265890|ref|ZP_07547439.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919059|gb|EFN49284.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 1145 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1056 (37%), Positives = 621/1056 (58%), Gaps = 59/1056 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + +++ K AIAITD ++ A++F ++A A GI+PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGAIDFYKEAVAQGIKPI 61 Query: 71 IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IGC++ + MQD + N+ +VLL GY+ L+++V+ + ++ Sbjct: 62 IGCEIYVAPRSMQDREYGIDNENY-------HLVLLAKDMTGYKNLMKIVT-VASIEGFY 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 R+ +L+E +EGLI L+ +G + + A++ L + +FG Y+ Sbjct: 114 YKPRVDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ + ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +D Sbjct: 173 LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDED 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R D YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 233 RMSFPTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDS 292 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LRN GL R +++ +RLD+EL+VI +M + YFLIV DF Sbjct: 293 YEY----LRNLCYEGLYKRYKN-------PSKEVIERLDYELSVIKQMGYVDYFLIVWDF 341 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC Sbjct: 342 IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + Sbjct: 402 YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFEL 461 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A++ + + + V +L++IS+ LEGL RHASTHAAG+VI PL V Sbjct: 462 GMTID-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ ++ D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D + Sbjct: 521 PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSME 578 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD + Y L++ T G+FQLES GM+Q + ++P +EDIIA +SLYRPGP+D I Y Sbjct: 579 YDDPKVYELISKGETEGVFQLESPGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYL 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 +N E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL +D++RRAM KK Sbjct: 639 ANRNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKM 698 Query: 723 EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+++++ FI GA +NG+ + A +F+ + FA+Y FNKSHAAAYA Sbjct: 699 DVMEQERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYA 758 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VI+YQTA++K +YPVEF+AA + +DN++KI + Q ++ I+++PP +N F V Sbjct: 759 VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTV 818 Query: 831 GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +++I + L+A+K VG I+ E + F S+ DF R+ +LN++ +ESL+ AG Sbjct: 819 VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946 A FG R QLL D + + + N N ++F G + LE+F + Sbjct: 879 AFSSFGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFP-K 937 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIR---GNNIRL 997 N + E E LG Y SGHPL+ Y + K + K EE + + + + Sbjct: 938 NRLLSMEKE--TLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVI 995 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A ++ +K+ K T+ + + +VT + E FP Sbjct: 996 AGVIATKKIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031 >gi|88808431|ref|ZP_01123941.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7805] gi|88787419|gb|EAR18576.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7805] Length = 1173 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1060 (38%), Positives = 603/1060 (56%), Gaps = 53/1060 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PA+A+TD ++ A+E + AGI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPQMVERAKELGMPALALTDHGVMYGAVELLKLCKGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P +V+L A GY+ L++L S +L Sbjct: 62 IIGNEMYV-------INGSIDDPQPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRG 114 Query: 127 QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + R C+ L + +EGLI+ T G I +A VA ++++FG+ Y Sbjct: 115 RGIFSRACIDKHLLKQYSEGLIVATACLGGEIPQAIMRERPDVARDVARWYQEVFGEDFY 174 Query: 184 VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR ++V++A + +VATN++ +L+ D EAHD L+ V ++S Sbjct: 175 LEIQDHGSPEDRIVNVEIVKIAQELGIQVVATNDAHYLTRHDVEAHDALLCVLTGKLISD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R T YLK+ EM +F+D + EA+ NTV +A + + +PRF Sbjct: 235 EKRLRYTGTEYLKSEEEMGRLFADHLDPAVVQEAIANTVSVAEKVEDYDILGRYQMPRFP 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E L GL RL G + + Y RL EL ++ +M F Y Sbjct: 295 IPE----GHTPVTYLHEVTEQGLRDRL--GLSSNDTIEETYADRLAHELQIMEQMGFPTY 348 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+V D+I++A++ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMP Sbjct: 349 FLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMP 408 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DFC +RR EVI YV +YG E+VAQIITF + +KA L+DV R L +PY DRL Sbjct: 409 DIDTDFCIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468 Query: 477 KLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 KLIP P L+A I D+S F+E DP V R ++++ ++EG + HAAG+ Sbjct: 469 KLIPVVRGKPAKLKAMIGDESPNPEFKEKYDKDPVVQRWVDMAMRIEGTNKTFGVHAAGV 528 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI PL +LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ +AQ Sbjct: 529 VIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAQS 587 Query: 593 -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G ++D +P D T+ LL GIFQLES+GMRQ + ++P +EDI ++++LYR Sbjct: 588 SGERIDPDKLPPQDQGTFDLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYR 647 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+D ++ + NRK+G+E I H ++P+L ET G+++YQEQ+M+IAQ L+GYSL E Sbjct: 648 PGPLDAGLIPKFINRKHGREAIDFAHSTLEPILSETYGIMVYQEQIMRIAQDLAGYSLGE 707 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EM K + F+ GAS+ G+ +A +F+ + FA+Y FNKSH+ AY Sbjct: 708 ADLLRRAMGKKKVSEMQKHRGIFVKGASERGVDDKVADELFDQMVLFAEYCFNKSHSTAY 767 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 ++YQTA++K HYPV ++AA +++ +K++++ + I++MPP VN DF Sbjct: 768 GAVTYQTAYLKAHYPVAYMAALLSVNAGASDKVQRYISNCNAMGIEVMPPDVNASGTDFT 827 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D RI + L+A++ +G R ++ + AD PF+SL D C RV S +NRR LESL+ Sbjct: 828 PRDQRILFGLSAVRNLGDGAIRALIRSREADGPFESLADLCDRVPSSVINRRSLESLIHC 887 Query: 889 GALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSV 945 GA+D +R QL+ LD + +A ++R + N+F G+ D S+ Sbjct: 888 GAMDALEPEANRAQLIADLDLLLDWANSRARDRASGQGNLFDLMAGSADGDSDAPSDLSL 947 Query: 946 E---------NSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIRGN 993 + S + + E+ ++GFY S HPL P +L +G+ G EE + + Sbjct: 948 APKAAPVKDYHPSEKLKLEKDLVGFYLSDHPLKQLTPPARLLAPIGLAGLEEQADKAKVS 1007 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I AMV +Q TRKG R+ + + EA FP Sbjct: 1008 AI---AMVSEMRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044 >gi|296332089|ref|ZP_06874553.1| DNA polymerase III DnaE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675516|ref|YP_003867188.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii str. W23] gi|296150860|gb|EFG91745.1| DNA polymerase III DnaE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413760|gb|ADM38879.1| DNA polymerase III, alpha subunit [Bacillus subtilis subsp. spizizenii str. W23] Length = 1115 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1046 (38%), Positives = 601/1046 (57%), Gaps = 77/1046 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQVHS YSLL A ++ ++ + ++A+TD + ++ A++F + A GI P Sbjct: 2 SFVHLQVHSGYSLLNSAAAVEELVSEAERLGYASLALTDDHVMYGAIQFYKACKARGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + DN G +P +VLL + GYQ L+++ S + Q K Sbjct: 62 IIGLTASVFTDDN------GLEAYP----LVLLAKSNTGYQNLLKISSVL----QSKSKG 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPID----RAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184 + WL EG+I +T G G I+ F ++Q A L F+ +FG Y Sbjct: 108 GLKPKWLHSY-REGIIAITPGEKGYIEMLLEEGLFEQAAQAA----LEFQSIFGKGAFYF 162 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + Q +G E Q+++L+ +P+ AT + ++ +ED A+ L A+ ++ D Sbjct: 163 SYQPFKGNQALSE-QILRLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLT--D 219 Query: 245 RP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 P PD LK EM +I+ + PEAL+ +VEIA++C + + LP F Sbjct: 220 APAEDLPDLDLKPLEEMQNIYREHPEALQESVEIAKQCRVDVSLGQTRLPSFPTPNG--- 276 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ L + +AGL R G + Y +RL +EL VI RMKFS YFLIV DF Sbjct: 277 -TSADDYLTDICMAGLRSRF-------GTPDERYLRRLQYELGVIKRMKFSDYFLIVWDF 328 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 +++A I GPGRGS AGS+ AY L ITD+DP+ LLFERFLNP+R+SMPD DIDF Sbjct: 329 MKYAHDKGIVTGPGRGSAAGSLVAYVLYITDVDPINHHLLFERFLNPERISMPDIDIDFP 388 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RRDEVI+YVQ KYG VAQIITFG+L AKAALRDVGR + + D+L KLIP P Sbjct: 389 DTRRDEVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPARP 448 Query: 484 AHPVS---LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + Q+ D R RE+ L + ++ +++K+EGL RH STHAAG+V+ + PL+ Sbjct: 449 GMTLDEARKQSPQLDKRLRESSL----LQQVYMVARKIEGLPRHTSTHAAGVVLSEEPLT 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599 +VP+ ++ + +TQ+ M +E GL+K DFLGL+ LTL++ + + +K+DLS Sbjct: 505 DVVPL-QEGHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLS 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I + D +T+ LL+ T GIFQLES+GMR L+ ++P +EDI+A+ +LYRPGP++NI Sbjct: 564 SISYRDDKTFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIP 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 ++ +RK+G+ + H + +L++T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ K Sbjct: 624 LFIDRKHGRAPVHYPHEDLRSILEDTYGVIVYQEQIMVIASRMAGFSLGEADLLRRAVSK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I Q A++ Sbjct: 684 KKKDILDQERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP+ F+ +T + N +KI ++ +A+ I+I+PPSVN F V D + YSL Sbjct: 744 KAHYPLYFMCGLLTSVIGNEDKIAQYLYEAKGSGIRILPPSVNKSSYPFTVEDGAVRYSL 803 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIK VG + + I +A +KPF+ L DFC RV SK +NR+ LE+L+F+GA+D FG +R Sbjct: 804 RAIKSVGISAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKTLEALIFSGAMDEFGQNRA 863 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSSVRFEN-- 954 LL S+D +H +FA + G F D E FS++ V E Sbjct: 864 TLLASIDV------------ALEHTELFAADDDQMGLFLD----ESFSIKPKYVETEELP 907 Query: 955 -------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 E+ LG YFS HPL Y+ L G ++ + + L ++ + Sbjct: 908 LVDLLAFEKETLGIYFSNHPLSAYRKQLAAHGAVSILQAQQAFK-RQLSLGVLLSKIKTI 966 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 +T+ G + ++T S+ E EA FP Sbjct: 967 RTKTGQNMAFLTLSDETGEMEAVVFP 992 >gi|254874369|ref|ZP_05247079.1| dnaE, DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254840368|gb|EET18804.1| dnaE, DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis MA00-2987] Length = 941 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/933 (40%), Positives = 564/933 (60%), Gaps = 36/933 (3%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRI 131 +L +D T F + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVD------------TEF-GICDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 SWL E+ E +I L GG G + +A A++ + ++FG Y+ Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170 Query: 192 YDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247 Y+ Y E + ++ A + L VATN ++F+ +DY+ H++ + +T++ + + + Sbjct: 171 YENEGLYNE-KALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSK 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP + +KE Sbjct: 230 FTKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPT-VNIPAGLTEKEY 288 Query: 308 ENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++L GL+ RL + A + + Y+ RL E+++I M F GYFLIV D Sbjct: 289 FSKL---CYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVED 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 346 FIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP Sbjct: 406 CIQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPET 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ + E + AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 466 PGTTFKKILHEGETLYEEVQ-ADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK---VDL 598 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + A+R +D+ Sbjct: 525 APVYCENKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDI 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 585 ADIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENI 644 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + +RK+ +++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMG Sbjct: 645 PTFIDRKHSRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK EEM+KQ++ F GA+K + I +A IF+ + FA YGFNKSHAAAYA+I+YQTA Sbjct: 705 KKKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836 W+K HYP E++AA M+ +M N +++ KF D + +I ++ P+VN D V I Sbjct: 765 WLKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMSITVLAPNVNKSVYDCIAVSKGTIL 824 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L AIKG+G + I+ E F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 825 LGLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDIS 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +R S++ K A +V + +++F Sbjct: 885 KNRATAFNSIEKAIKNAGYVNEMNAAGQDDLFG 917 >gi|312880004|ref|ZP_07739804.1| DNA polymerase III, alpha subunit [Aminomonas paucivorans DSM 12260] gi|310783295|gb|EFQ23693.1| DNA polymerase III, alpha subunit [Aminomonas paucivorans DSM 12260] Length = 1136 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1044 (39%), Positives = 598/1044 (57%), Gaps = 48/1044 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F+HL VHS YSLL+GA+ +++ ++ A+A+TD ++ EF +K+ AGI Sbjct: 2 SEPFIHLHVHSEYSLLDGAIRCTELVETASSMGMNAVALTDHGVMYGCEEFFEKSEKAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI GC++ +D +GK +VL GY+ L++LVS + + Sbjct: 62 KPIFGCEVYVDPSGIDNREGKGKNH-----HLVLWAENETGYRNLVKLVS-LANTEGFYY 115 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186 RI L EGLI + +G I + A R ++ + G+ R Y+ + Sbjct: 116 KPRIDHHLLAR-HAEGLIGSSACLAGEIPSLILSGDYEAARDRAFLYRDILGEGRFYLEV 174 Query: 187 QRHRGYDRYRES-----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ RE ++V+LA + + PLVATN++ +L D HDVL+ V + V Sbjct: 175 M----HNALREQALANRELVRLARSEDFPLVATNDAHYLRRSDASWHDVLLCVQTQSTVQ 230 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 DR R D Y ++ EM S+F ++LP+AL NT EIA RC+ L + +LP F E Sbjct: 231 TTDRYRFGADDFYFRSPEEMWSLFGAELPDALRNTQEIADRCNVKLTLGKYLLPEFPIPE 290 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E L +A GL RL I + Y +RL +EL VI +M F GYF I Sbjct: 291 GQTL----ETFLEKRAWEGLARRLGTQEIPEAYG-----ERLRYELGVIRQMGFPGYFCI 341 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VAD I AK IPVGPGRGS AGS+ A+AL IT++DPLR+ LLFERFLNP+R+SMPD D Sbjct: 342 VADIITAAKGQGIPVGPGRGSAAGSLVAWALGITELDPLRYHLLFERFLNPERISMPDID 401 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 D RRDEV+ Y+ KYG +RV+QIITF +++KAA+RDVGRAL MPYS VDR+ KL+ Sbjct: 402 TDISDKRRDEVLAYIVQKYGADRVSQIITFDRMKSKAAIRDVGRALAMPYSDVDRVAKLV 461 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +A+ ++ D V +L+E + +EG+ RH S HAAG+VI PL Sbjct: 462 PE--GVKTLGEALEKAPDLKQLSDQDLQVRQLIETASHIEGIARHCSQHAAGVVITPVPL 519 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDL 598 ++VP+ R + + VTQ++M+ IE GL+K DFLGL+TL++L+ +L + +A +DL Sbjct: 520 VEMVPVRR-IGENQVVTQYSMEPIEHLGLVKMDFLGLRTLSVLEDTLSNIVANHKPPLDL 578 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S IP DD ET+ +L TLG+FQLESSGM+ L ++PDC ED+IA+++LYRPGP+ + Sbjct: 579 SAIPMDDPETFDMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGSG 638 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +V Y RK+G+ HP ++ LKET GVI+YQEQVMQ A L+GYSL EAD+LRRA Sbjct: 639 MVEDYIERKHGRAVTQYPHPCLEKALKETYGVILYQEQVMQCAAELAGYSLGEADLLRRA 698 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK + M+KQ+ +F+ GA + G+ A IF+ + KFA+YGFNKSH+AAYA+ISYQT Sbjct: 699 MGKKKADVMEKQRSKFVDGARERGVDPVKAEEIFDSIEKFAEYGFNKSHSAAYALISYQT 758 Query: 777 AWMKTHYPVEFLAASM-TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 A++K HY EFLAA + ++ ++ + ++ + R ++PP VN F I Sbjct: 759 AYLKAHYGAEFLAAYLSSMVGARMDILGRYIRGVRDLGFPVLPPDVNESKAAFAAVGKVI 818 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+ + VG I++A S PF S DF RVD + +NR V+E+L+ AGA D Sbjct: 819 RFGLSGVGKVGEAAVDSILKARSEGGPFASFWDFLIRVDLRAVNRGVVENLIKAGAFDAL 878 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----TLEKFSVENSSV 950 +R QLL++L + + Q ++ ++F E+ +D + E F V Sbjct: 879 WPNRRQLLENLPTLLEMGQ--KRAERGNQTSLFLEEQE--ADDVPPMEPCEDFEVRQ--- 931 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIRLAAMVVSKQQKKT 1009 + + E+ LG Y SGHP + + +R E R + ++V +++ T Sbjct: 932 KLDFEKEALGLYISGHPFEQIEGRVRPYTTCSLAEVEHWQSRDTPPVVGGLLVGVKERYT 991 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 ++G +G + F + + E FP Sbjct: 992 KRGDPMGILEFEDTETKLETVCFP 1015 >gi|260495663|ref|ZP_05815787.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_33] gi|260196846|gb|EEW94369.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_33] Length = 1133 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/984 (38%), Positives = 593/984 (60%), Gaps = 53/984 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSL EG S++N L K ++A+TD N+F A+EF QKA GI+P Sbjct: 4 NFVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + +D + S+ LL GY+ L++L S +Y ++ ++ + Sbjct: 64 IIGLELPVFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNLQ 187 ++ L+E ++ LI L+ +G I +A NSS ++ + ++F + Y+ +Q Sbjct: 112 KLNKEILKEY-SQDLIALSSSINGEIGKAILTNSSDEKINSIINEYIEIFSKENFYLEIQ 170 Query: 188 RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + + + ++ LA + L LVATNN ++ + YE D+++ + V +K+R Sbjct: 171 ANELTETKIINDKLYDLAEFYNLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRK 230 Query: 247 R-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R ++ + YLK++ EM + +A+ENT IA C+ + P + ++ Sbjct: 231 RAISKELYLKSKDEMKRFLGEKFEKAIENTNHIASLCNVEITFGNLQFPYY------EVP 284 Query: 305 KEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFL 358 E +G++ L I K Y +D RL++EL+VI +M +SGYF+ Sbjct: 285 SE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYSGYFI 335 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 +V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD Sbjct: 336 VVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDI 395 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+L KL Sbjct: 396 DIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKL 455 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 I P + + + ++ + D + ++++++ ++E RH STHAAGI+I Sbjct: 456 IS--PFQTLE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKED 512 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 L + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VD Sbjct: 513 LDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVD 572 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPGP+ + Sbjct: 573 LYKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQS 632 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRR Sbjct: 633 GMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRR 692 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ AYA+ISY Sbjct: 693 AMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYW 752 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA+ K HYP + AA MT E+ I + DA++ +++ P++N+P F+V ++ I Sbjct: 753 TAYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNINSPSAYFEVKNDGI 812 Query: 836 YYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GALD Sbjct: 813 TYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEI 872 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVENSSVR 951 +R + S+D + Y+ K + N+F T DK L E F+++ + Sbjct: 873 KGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDE---K 928 Query: 952 FENEQRVLGFYFSGHPLDVYKPIL 975 E+ LGFY S HPLD YK I+ Sbjct: 929 LNKEKEFLGFYLSSHPLDRYKDII 952 >gi|326390936|ref|ZP_08212486.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW 200] gi|325992978|gb|EGD51420.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW 200] Length = 1145 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1056 (37%), Positives = 620/1056 (58%), Gaps = 59/1056 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61 Query: 71 IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IGC++ + MQD + N+ +VLL GY+ L+++V+ + ++ Sbjct: 62 IGCEIYVAPRSMQDREYGIDNENY-------HLVLLAKDMTGYKNLMKIVT-VASIEGFY 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 R+ +L+E +EGLI L+ +G + + A++ L + +FG Y+ Sbjct: 114 YKPRVDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ + ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +D Sbjct: 173 LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDED 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R D YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 233 RMSFPTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDS 292 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LRN GL R ++ +RLD+EL+VI +M + YFLIV DF Sbjct: 293 YEY----LRNLCYEGLYKRYKN-------PGKEVIERLDYELSVIKQMGYVDYFLIVWDF 341 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC Sbjct: 342 IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + Sbjct: 402 YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFEL 461 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A++ + + + V +L++IS+ LEGL RHASTHAAG+VI PL V Sbjct: 462 GMTID-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ ++ D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D + Sbjct: 521 PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSME 578 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD + Y L++ T G+FQLESSGM+Q + ++P +EDIIA +SLYRPGP+D I Y Sbjct: 579 YDDLKVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYL 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 +N E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL +D++RRAM KK Sbjct: 639 ANRNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKM 698 Query: 723 EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+++++ FI GA +NG+ + A +F+ + FA+Y FNKSHAAAYA Sbjct: 699 DVMEQERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYA 758 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VI+YQTA++K +YPVEF+AA + +DN++KI + Q ++ I+++PP +N F V Sbjct: 759 VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTV 818 Query: 831 GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +++I + L+A+K VG I+ E + F S+ DF R+ +LN++ +ESL+ AG Sbjct: 819 VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946 A FG R QLL D + + + N N ++F G + LE+F + Sbjct: 879 AFSSFGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFP-K 937 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIR---GNNIRL 997 N + E E LG Y SGHPL+ Y + K + K EE + + + + Sbjct: 938 NRLLSMEKE--TLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVI 995 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A ++ +K+ K T+ + + +VT + E FP Sbjct: 996 AGVIATKKIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031 >gi|167039837|ref|YP_001662822.1| DNA polymerase III DnaE [Thermoanaerobacter sp. X514] gi|300915388|ref|ZP_07132702.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561] gi|307724839|ref|YP_003904590.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513] gi|166854077|gb|ABY92486.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514] gi|300888664|gb|EFK83812.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561] gi|307581900|gb|ADN55299.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513] Length = 1145 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1059 (37%), Positives = 621/1059 (58%), Gaps = 65/1059 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61 Query: 71 IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IGC++ + MQD + N+ +VLL GY+ L+++V+ + ++ Sbjct: 62 IGCEIYVAPRSMQDREYGIDNENY-------HLVLLAKDMTGYKNLMKIVT-VASIEGFY 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 R+ +L+E +EGLI L+ +G + + A++ L + +FG Y+ Sbjct: 114 YKPRVDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ + ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +D Sbjct: 173 LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDED 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R D YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 233 RMSFPTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDS 292 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LRN GL R + ++ +RLD+EL+VI +M + YFLIV DF Sbjct: 293 CEY----LRNLCYEGLYKRYKNPS-------KEVIERLDYELSVIEQMGYVDYFLIVWDF 341 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC Sbjct: 342 IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG + VAQIITFG++ A+A +RDVGRAL Y++VD + K+IP + Sbjct: 402 YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYLYAEVDVIAKMIPFEL 461 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A++ + + + V +L++IS+ LEGL RHASTHAAG+VI PL V Sbjct: 462 GMTID-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ ++ D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + RGV +D + Sbjct: 521 PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVEKNRGVTIDFDSME 578 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD + Y L++ T G+FQLESSGM+Q + ++P +EDIIA +SLYRPGP+D I Y Sbjct: 579 YDDPKVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYL 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 +N E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL +D++RRAM KK Sbjct: 639 ANRNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKM 698 Query: 723 EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+++++ FI GA +NG+ + A +F+ + FA+Y FNKSHAAAYA Sbjct: 699 DVMEQERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYA 758 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VI+YQTA++K +YPVEF+AA + +DN++K+ + Q R+ I+++PP +N F V Sbjct: 759 VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKVAFYVQVCRKMGIKVLPPDINESDSYFTV 818 Query: 831 GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +++I + L+A+K VG I+ E + F S+ DF R+ +LN++ +ESL+ AG Sbjct: 819 VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT------FSDKITLEKF 943 A FG R QLL + D + + + N N ++F + T F D LE+F Sbjct: 879 AFSSFGVRRSQLLSAYDKLMENIKKNRNNNLNGQISLFGEVEQTHGVGFEFPD---LEEF 935 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIR---GNN 994 S E+ LG Y SGHPL+ Y + K + K EE + + Sbjct: 936 P---KSRLLSMEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQE 992 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +A ++ +K+ K T+ + + +VT + E FP Sbjct: 993 VVIAGVIATKKIKFTKNNNIMAFVTIEDLYGTVEVIVFP 1031 >gi|254672044|emb|CBA04625.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha275] Length = 991 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/974 (39%), Positives = 559/974 (57%), Gaps = 51/974 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + AGI+ Sbjct: 4 PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQ 127 PI + I N PF +L++ GY RL EL++ Y+ D+ Sbjct: 64 PIGAADVWIGN------PNAPDKPF----RAMLIIRNDAGYLRLSELLTAAYVGKDRNVH 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL+ GLI L+G G + + A L + F D Y+ LQ Sbjct: 114 HAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQ 173 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ K R Sbjct: 174 RLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CD 301 PR TP + M F+DLPEALENTVEIA+RC+ + + LP F + D Sbjct: 234 PRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLD 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + NE GL+ R+ Q + +Y++RLDFELN+I +MKF GYFL Sbjct: 294 DYLIKLSNE-------GLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDF Sbjct: 347 IVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L KL Sbjct: 407 DVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKL 466 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + P+ L A+ + + +E A+ D L+ +++KLE L R HA G++I Sbjct: 467 IPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLGMHAGGVLIAPG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ +AQ +K Sbjct: 526 KISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE-----MAQNNIKNT 580 Query: 596 ----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYR Sbjct: 581 TGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYR 640 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD Sbjct: 641 PGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGAD 699 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ Sbjct: 700 LLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYAL 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F Sbjct: 760 ISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPY 819 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N +I Y+L AIKG G I+ A + F L +FC RV + +NRR LE+L+ G Sbjct: 820 PNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLNFCERVGKEHMNRRTLEALIRGG 879 Query: 890 ALDCFGYSRMQLLQ----SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 A D +R LL ++DN + A + +H+ H G + +E+ Sbjct: 880 AFDSIEPNRAMLLANIDLAMDNADQKAANANQGGLFRHDG-RRHRTGAAHRRADVERIG- 937 Query: 946 ENSSVRFENEQRVL 959 + R +N R+L Sbjct: 938 --KTRRRKNRHRLL 949 >gi|291485359|dbj|BAI86434.1| DNA polymerase III DnaE [Bacillus subtilis subsp. natto BEST195] Length = 1115 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1039 (38%), Positives = 603/1039 (58%), Gaps = 63/1039 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQVHS YSLL A ++ ++ + ++A+TD + ++ A++F + A GI P Sbjct: 2 SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + D + P +VLL + GYQ L+++ S + Q K Sbjct: 62 IIGLTASVFTDD---------SELEAYP-LVLLAKSNTGYQNLLKISSVL----QSKSKG 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 + WL EG+I +T G G I+ + A + L F+ +FG Y + Q Sbjct: 108 GLKPKWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 +G ++ Q+++L+ +P+ AT + ++ +ED A+ L A+ ++ D P Sbjct: 167 FKG-NQVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLT--DAPAE 223 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 PD LK EM +I+ + PEAL+ +VEIA +C + + LP F + Sbjct: 224 DLPDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSA 279 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ L + + GL R G + Y +RL +EL+VI RMKFS YFLIV DF++ A Sbjct: 280 DDYLTDICMEGLRSRF-------GKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHA 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GPGRGS AGS+ AY L ITD+DP++ LLFERFLNP+R+SMPD DIDF RR Sbjct: 333 HEKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI+YVQ KYG VAQIITFG+L AKAALRDVGR + + D+L KLIP+ P + Sbjct: 393 DEVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTL 452 Query: 488 S---LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 Q+ D R RE+ L + ++ I++K+EGL RHASTHAAG+V+ + PL+ +VP Sbjct: 453 DEARQQSPQLDKRLRESSL----LQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVP 508 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603 + ++ + +TQ+ M +E GL+K DFLGL+ LTL++ + + +K+DLS I + Sbjct: 509 L-QEGHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISY 567 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 D +T+ LL+ T GIFQLES+GMR L+ ++P +EDI+A+ +LYRPGP++NI ++ + Sbjct: 568 SDDKTFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFID 627 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ + H + +L++T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK KE Sbjct: 628 RKHGRAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKE 687 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +D+++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I Q A++K HY Sbjct: 688 ILDRERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHY 747 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P+ F+ +T + N +KI ++ +A+ I+I+PPSVN F V + + YSL AIK Sbjct: 748 PLYFMCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIK 807 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG + + I +A +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R LL Sbjct: 808 SVGVSAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLA 867 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN--------- 954 S+D ++A+ + + G F D E FS++ V E Sbjct: 868 SIDVALEHAELFAADDD---------QMGLFLD----ESFSIKPKYVETEELPLVDLLAF 914 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LG YFS HPL ++ L G ++ ++ + L ++ + +T+ G Sbjct: 915 EKETLGIYFSNHPLSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQN 973 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++T S+ E EA FP Sbjct: 974 MAFLTLSDETGEMEAVVFP 992 >gi|154148261|ref|YP_001407070.1| DNA polymerase III subunit alpha [Campylobacter hominis ATCC BAA-381] gi|153804270|gb|ABS51277.1| DNA polymerase III subunit alpha [Campylobacter hominis ATCC BAA-381] Length = 1213 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1062 (37%), Positives = 607/1062 (57%), Gaps = 66/1062 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+G ++N+ + A+AITD N+F A+EF + GI+PI Sbjct: 4 FTHLHLHTEYSLLDGVNKIDNLAKILKERGTKAVAITDHGNMFGAIEFYKTMKKNGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I D L K F ++LL GY+ LI L S+ +L D R Sbjct: 64 IGMEAYIHNHDKLD-DKSDKQRF----HLILLAKNEIGYKNLIYLSSKAFL-DGFYYYPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-----------AEKRLLTFKKLFG 179 I + L+ EG+I +G I F N S+ A+K L +K++FG Sbjct: 118 INKNLLRA-HHEGIICNAACIAGEI--GFHLNLSERNIKRGAKGYEGAKKAALEYKEIFG 174 Query: 180 DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ + RH + R + +++L+ + L+A+N++ + ++ ++ D+ + ++ + Sbjct: 175 DDFYLEIMRHGYTSQLRIDDDLIRLSRETGIKLIASNDAHYTNQAGHDLQDIFVCLSTGS 234 Query: 239 VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----HAPILP 293 V+S R T Y+K EM IF+D+PE +ENT EIA +C+ + P P Sbjct: 235 VLSDPKRMHHTVRQLYVKTDEEMKEIFADIPEVIENTQEIANKCNLSFAFDDPNYHPTAP 294 Query: 294 --RFIEKECDDI-----QKEEENELRNKAVA-------GLEVRLAQGAIAKGYHAQDYRQ 339 +F ++ + I + EE +N + GL RL IA H + Y+ Sbjct: 295 NFKFTREKANLINLTLPEANEEYSKKNDDLLFETLCRDGLTKRLE--FIAPEKH-EIYKA 351 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RL+ E+ +I +M F GY LIV DFI WAK ++IPVGPGRGS AGS+ AY+L ITD+DP+ Sbjct: 352 RLEKEIQIIEKMGFGGYMLIVQDFINWAKDHDIPVGPGRGSAAGSLCAYSLRITDLDPIP 411 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 ++LLFERFLNPDR+SMPD D+DF Q RR+EV YV NKYG E VAQ+ TFG L A+ +R Sbjct: 412 YNLLFERFLNPDRISMPDIDVDFAQARREEVFEYVSNKYGKENVAQVATFGKLLARGVIR 471 Query: 460 DVGRALQMPYSQVDRLCKLIP-------NDPAHPVSLQ----AIADDSRFREARLADPSV 508 DV R +MP + D + KL+P N P S + A + + ++ DP Sbjct: 472 DVARVCEMPLYKADAMAKLVPEQLGITLNGEGEPGSEKYKPGAFQLEPKIKDLVEQDPLA 531 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKA 566 ++ + S LEGL R+ HAAG+VI + PL VP++R +SD +TQ+ ++E Sbjct: 532 KKVWDYSLGLEGLNRNTGMHAAGVVISNDPLWNKVPLFRQTKSDDGHYITQYTKLYLEDV 591 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 LIKFDFLGLK L ++ ++ + +R K + I F+D +TY + + T GIFQ+ES Sbjct: 592 DLIKFDFLGLKNLDVIANAIKLIKRRYNKDIVWENIDFNDKKTYETIQSGNTFGIFQIES 651 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 GM++ G++PDC EDIIA++S++RPGP++ I + RK+G+ K+ I P I +L+ T Sbjct: 652 PGMQKLATGLKPDCFEDIIAMISIFRPGPMELIPDFIARKHGEAKVEYIMPEIKEILEPT 711 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+I+YQEQVMQI Q + G+SL EAD++RRAM KK ++++ +E+++ GA K G Sbjct: 712 YGIIVYQEQVMQIVQKIGGFSLGEADLVRRAMSKKDEKKLAHMREQYLDGAKKLGFDTNK 771 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A +F+L+ KFA YGFNKSHAAAY++I++QTA++KT+YP EF+AA +T E N +K+ + Sbjct: 772 ANELFDLIMKFASYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEESNADKVLTY 831 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNR-------IYYSLAAIKGVGTTTARHIMEASA 858 +A++ I I+PPS+N +F V D+ I Y L AIKGVG +I+E Sbjct: 832 IDEAKRLGITILPPSINKSIREFSVTDDENAPSKTAIIYGLGAIKGVGLAGIENIIELRD 891 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 +KPF++++DF SRVD+ K+N++V+E+L AGA+DC G +R LLQ+ +NI + Sbjct: 892 EKPFETIDDFASRVDNFKVNKKVIEALTCAGAMDCLGKTRKALLQNSENIVDAMKKAAIL 951 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 R ++ ++ F K+ E E + EQ+ +G Y SGHPLD +K + Sbjct: 952 RDEATSSLNFGDESFFDIKVNFEDTKEEFKRKELLKLEQQSIGIYLSGHPLDDFKDEISS 1011 Query: 978 MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 + + T G I + S +K T+ G ++G ++ Sbjct: 1012 INYTSTTDFENTDDG-EILCVGKIESITKKITKSGKQMGIIS 1052 >gi|313893027|ref|ZP_07826604.1| putative DNA polymerase III subunit alpha [Veillonella sp. oral taxon 158 str. F0412] gi|313442380|gb|EFR60795.1| putative DNA polymerase III subunit alpha [Veillonella sp. oral taxon 158 str. F0412] Length = 1135 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1015 (37%), Positives = 616/1015 (60%), Gaps = 39/1015 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + QPA+AITD N+++A+ F ++ A G++PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGKQ 127 IGC++ + +G++ + ++LL T EGY+ L+++VS+ +L + + Sbjct: 64 IGCEVYVTEHSRFDRP-EGRSR-ERLKHLILLAETMEGYRNLVKIVSKASTEGMLYRPRA 121 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 + + ++G+I L+ G I + ++ + A++ + + + +G D ++ + Sbjct: 122 DRDLLRQY-----SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEI 176 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H + + + ++++L+ + L +VA+N+ ++ +ED +A D+ + ++ ++ DR Sbjct: 177 QNHGLTEEAKAQEELIKLSKEYGLGVVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDR 236 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + D YLK+ EM +FS +P A+ENT++IA RC+ LP F D+ Sbjct: 237 LKFPNDEFYLKSGDEMAQLFSHIPGAIENTLKIADRCNVEFNFDEHHLPHF------DVP 290 Query: 305 KEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E ++ + V E+ RL G +++ ++RLD+EL+VI M F YFLIV D+ Sbjct: 291 EGETSKTYLRKVCEREIPRLY------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDY 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 +++A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC Sbjct: 345 VRYAREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++R + I YV KYG ERV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ Sbjct: 405 YEKRGKAIEYVTRKYGQERVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNEL 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++L + ADP+V L + +KLEG+ R++STHAAG+VI PL V Sbjct: 465 G--ITLDKALQGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602 P+ ++ + VTQ++ IE+ GL+K DFLGL+TLT++ +L + A RG+ +DL IP Sbjct: 523 PV-QNANDEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIP 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 DD +LT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + +V Sbjct: 582 LDDKAACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVAD 641 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + +R++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK Sbjct: 642 FIDRRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKK 701 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + + Q+E FI G+ NGI ++IA +F+LL FA YGFNKSH+AAYA I+YQTA++K Sbjct: 702 KESVLKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLK 761 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HY EF+AA+MT M N++K+ + ++ N++++ P +N F V + I + L Sbjct: 762 AHYFPEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQGDAIRFGLG 821 Query: 841 AIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK VG R I E + + + DFC RVD+K +N+R+LESL+ GA+D F +R Sbjct: 822 GIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRN 881 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957 QLL ++ Q +K+ ++F E F +E S ++ + ++E+ Sbjct: 882 QLLHMYESAQAVGAKEQKDAAMGTMSLFGDIEESVDFIAVPNVEDLSEDD---KLKDEKE 938 Query: 958 VLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 GFY +GHPL Y L + + E+ G I ++ +K + TR+ Sbjct: 939 YTGFYITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKTDRMTRR 993 >gi|16079975|ref|NP_390801.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. 168] gi|221310864|ref|ZP_03592711.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. 168] gi|221315190|ref|ZP_03596995.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320107|ref|ZP_03601401.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. JH642] gi|221324389|ref|ZP_03605683.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. SMY] gi|6166145|sp|O34623|DPO3A_BACSU RecName: Full=DNA polymerase III subunit alpha gi|2293260|gb|AAC00338.1| DNA-polymerase III alpha-chain [Bacillus subtilis] gi|2635388|emb|CAB14883.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 1115 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1039 (38%), Positives = 603/1039 (58%), Gaps = 63/1039 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQVHS YSLL A ++ ++ + ++A+TD + ++ A++F + A GI P Sbjct: 2 SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + D + P +VLL + GYQ L+++ S + Q K Sbjct: 62 IIGLTASVFTDD---------SELEAYP-LVLLAKSNTGYQNLLKISSVL----QSKSKG 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 + WL EG+I +T G G I+ + A + L F+ +FG Y + Q Sbjct: 108 GLKPKWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 +G ++ Q+++L+ +P+ AT + ++ +ED A+ L A+ ++ D P Sbjct: 167 FKG-NQVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLT--DAPAE 223 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 PD LK EM +I+ + PEAL+ +VEIA +C + + LP F + Sbjct: 224 DLPDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSA 279 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ L + + GL R G + Y +RL +EL+VI RMKFS YFLIV DF++ A Sbjct: 280 DDYLTDICMEGLRSRF-------GKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHA 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GPGRGS AGS+ AY L ITD+DP++ LLFERFLNP+R+SMPD DIDF RR Sbjct: 333 HEKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI+YVQ KYG VAQIITFG+L AKAALRDVGR + + D+L KLIP+ P + Sbjct: 393 DEVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTL 452 Query: 488 S---LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 Q+ D R RE+ L + ++ I++K+EGL RHASTHAAG+V+ + PL+ +VP Sbjct: 453 DEARQQSPQLDKRLRESSL----LQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVP 508 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603 + ++ + +TQ+ M +E GL+K DFLGL+ LTL++ + + +K+DLS I + Sbjct: 509 L-QEGHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISY 567 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 D +T+ LL+ T GIFQLES+GMR L+ ++P +EDI+A+ +LYRPGP++NI ++ + Sbjct: 568 SDDKTFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFID 627 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ + H + +L++T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK KE Sbjct: 628 RKHGRAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKE 687 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +D+++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I Q A++K HY Sbjct: 688 ILDRERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHY 747 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P+ F+ +T + N +KI ++ +A+ I+I+PPSVN F V + + YSL AIK Sbjct: 748 PLYFMCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIK 807 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG + + I +A +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R LL Sbjct: 808 SVGVSAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLA 867 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN--------- 954 S+D ++A+ + + G F D E FS++ V E Sbjct: 868 SIDVALEHAELFAADDD---------QMGLFLD----ESFSIKPKYVETEELPLVDLLAF 914 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LG YFS HPL ++ L G ++ ++ + L ++ + +T+ G Sbjct: 915 EKETLGIYFSNHPLSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQN 973 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++T S+ E EA FP Sbjct: 974 MAFLTLSDETGEMEAVVFP 992 >gi|46203696|ref|ZP_00051135.2| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum magnetotacticum MS-1] Length = 538 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/534 (60%), Positives = 420/534 (78%), Gaps = 5/534 (0%) Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP+R+SMPDFDIDFC + R+ Sbjct: 2 HDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNPERVSMPDFDIDFCVEGRER 61 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VIRYVQ +YG +V QIITFG+L A+ LRDVGR L+MPY QVD+L KL+P +PA+PV+L Sbjct: 62 VIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLEMPYGQVDKLTKLVPQNPANPVTL 121 Query: 490 -QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 QAI + + ++A +P V RL+EIS+KLEGL+RHASTHAAG+VIGDRPL +LVP+YRD Sbjct: 122 AQAIEGEPKLQQAIQEEPIVARLIEISKKLEGLHRHASTHAAGVVIGDRPLEELVPLYRD 181 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ D L QRG++VDL+ IP DD +T Sbjct: 182 PKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLLKQRGIEVDLAQIPLDDPKT 241 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y + T+ +FQ+ES+GMR+AL MQ D +EDIIALV+LYRPGP+ NI VY RK G+ Sbjct: 242 YEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIALVALYRPGPMANIPVYCERKLGR 301 Query: 669 ----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 E HP+++P+L+ET G+I+YQEQVM++A++L+GY+L EAD+LRRAMGKKIK E Sbjct: 302 DAGNEASWYPHPMLEPILRETFGIIVYQEQVMEVAKVLAGYTLGEADMLRRAMGKKIKAE 361 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MD Q++RF+ G ++GI + A IF+LLAKFADYGFNKSHAAAYA+++YQTA++K +YP Sbjct: 362 MDAQRDRFVKGCLESGIPQAKANEIFDLLAKFADYGFNKSHAAAYALVTYQTAYLKANYP 421 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAA+MTL++DN +K+ +F QDA++ I + PPSVNT V F V + RI Y+LAAIKG Sbjct: 422 VEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSVNTSGVVFDVKEGRILYALAAIKG 481 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 VG I+ A DKPF L F R++ + +N+R LE+L+ AGALDC R Sbjct: 482 VGRAAVESIVAARGDKPFKDLACFARRLNPRHVNKRTLENLIAAGALDCIEPDR 535 >gi|296274562|ref|YP_003657193.1| DNA polymerase III subunit alpha [Arcobacter nitrofigilis DSM 7299] gi|296098736|gb|ADG94686.1| DNA polymerase III, alpha subunit [Arcobacter nitrofigilis DSM 7299] Length = 1180 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1003 (38%), Positives = 589/1003 (58%), Gaps = 51/1003 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL +H+ YSLL+GA + ++ KI A ++A+TD N+F A++F + A GI+ Sbjct: 5 PEFTHLHLHTEYSLLDGANKIKDLAKKIKALGMKSVAMTDHGNMFGAIDFYKAMKAEGIK 64 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + I + L + K + L GY+ L+ L S+ Y+ G Sbjct: 65 PIIGMEAYIHNSEELDDKSHRKRF-----HLCLYAKNQVGYKNLMFLTSQAYM--HGFYY 117 Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------QVAEKRLLTFKKL 177 RI L+E +EGL+ G ++ S + A++ L +K++ Sbjct: 118 YPRINKKILRE-NSEGLVCSAACLQGEVNWHLNTQSERNVKNGAKGYEEAKRIALEYKEI 176 Query: 178 FGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 FGD Y+ + RH D+ + + Q+++++ + +VATN++ +L ++D +AH+ M +A Sbjct: 177 FGDDFYLEIMRHGISDQHFIDDQILRISKETGIKVVATNDTHYLKQKDAQAHEAFMCIAM 236 Query: 237 STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + + +R R + + YLK+ ++ +++D+PE + T EI +C+ +++ P P F Sbjct: 237 NKLYDDPNRLRHSVHEFYLKSSEQISKLYADIPETIAATQEIVEKCNLEIKLGDPTPPNF 296 Query: 296 I---EKECDD----IQKEEENELRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRL 341 EK ++ + E E L N + GLE RL I Q+Y+ RL Sbjct: 297 KFTREKSQEEGLTLPEPELEYSLENDKILFVHECWKGLEKRLE---IVPQERHQEYKDRL 353 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 E+++I MKF GY LIV DF+ AK+ IPVGPGRGS AGS+ A++L ITDIDPL + Sbjct: 354 QVEIDIINSMKFPGYMLIVWDFVIAAKQMKIPVGPGRGSAAGSLVAFSLAITDIDPLPYG 413 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D+DFCQ RR E++ YV KYG VAQIITFG L AK +RDV Sbjct: 414 LLFERFLNPERVSMPDIDMDFCQARRQEILDYVIEKYGRANVAQIITFGKLLAKGVIRDV 473 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 R L MPYSQ D + KLIP++ ++ + + + +E ++P R+ + + LEGL Sbjct: 474 ARVLDMPYSQADAMAKLIPDELGINLT-SSYEKEPKIKELCDSNPQAKRVWDFAIALEGL 532 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R+A THAAG+VI + PL P+++ + TQ+N K++E LIKFDFLGLKTLT+ Sbjct: 533 NRNAGTHAAGVVISNEPLWNKTPLFKPSGMETLATQYNGKYVEDVDLIKFDFLGLKTLTV 592 Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 ++++ + QR G +V+ + +D Y L+ T T+G+FQ+ES GM+ + ++P Sbjct: 593 IEEANKLIEQRHGKRVNFLTVDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKPSNF 652 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID----PMLKETQGVIIYQEQ 694 EDIIA+++LYRPGP+++ ++ + +RK+G+E+I + D P+L+ T GVI+YQEQ Sbjct: 653 EDIIAVLALYRPGPMESGMLDDFIDRKHGREEINYFYDEFDAPLRPILETTYGVIVYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VMQI Q + G+SL AD++RRAMGKKIKEEMD+ K F G K G K +F+L+ Sbjct: 713 VMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFAIGGVKKGFVKEHCEELFDLIV 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+ + ++ + Sbjct: 773 KFAGYGFNKSHSAAYALVTFYTSYLKKYYPSEFMAALLTLEKDNTDKVVKYVDEVKRLKL 832 Query: 815 QIMPPSVNTPCVDF---KV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFC 869 + PP +N + F K+ G + + + AIKG G + I+ E + + F+ DF Sbjct: 833 DLFPPDINKSDLVFAPKKIDGQEVVMFGMGAIKGAGDVAIKSILKERNENGNFEDFADFI 892 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 SRVD K+N+RV ESL AG D FGYSR +L+ ++ I + + ++F Sbjct: 893 SRVDGSKVNKRVFESLAKAGGFDTFGYSRRSILEQIETINETVGKAMAAKKMATGSLFGD 952 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 K ++ LEKF E E++ LGFY SGHPLD Y+ Sbjct: 953 SKELTKVEVQLEKFEEYELKELLELEKQSLGFYVSGHPLDEYR 995 >gi|34558271|ref|NP_908086.1| DNA polymerase III subunit alpha [Wolinella succinogenes DSM 1740] gi|34483990|emb|CAE10986.1| DNA POLYMERASE III ALPHA SUBUNIT [Wolinella succinogenes] Length = 1178 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/1047 (36%), Positives = 608/1047 (58%), Gaps = 50/1047 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S + HL +H+ YSLL+GA + ++ K+ A+++TD N+F A++F G+ Sbjct: 2 SYPYTHLHLHTEYSLLDGANKIKSLAKKVKQLGMSAVSMTDHGNMFGAIDFYTAMKKEGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG + + D L G + L GYQ L+ L S M ++ Sbjct: 62 KPIIGIEAYLHNSDEL-----GDKSTKQRFHLCLYAKNEVGYQNLMYL-SSMSFIEGFYY 115 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------QVAEKRLLTFKKL 177 RI L+E +EGL+ + G + NS + A++ L ++++ Sbjct: 116 YPRINKKLLRE-HSEGLVCSSACLQGEVQWHLNTNSERNVKFGAKGYERAKEVALEYREI 174 Query: 178 FGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 FG+ Y+ + RH G + + +++L+ + ++ATN++ + +ED EAH+ M +A Sbjct: 175 FGEDFYLEIMRHGIGDQLFIDEPLLRLSLETGIKIIATNDTHYQLQEDAEAHEAFMCIAM 234 Query: 237 STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + + +R R + + YLK+ +M +F+D+PEAL NT EI +C+ L + P P F Sbjct: 235 NKNFNDPNRLRHSVQEFYLKSPEQMEELFADIPEALLNTQEIVEKCNLELHLGNPTPPTF 294 Query: 296 IEKECDDIQKEE-------ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 K +D K E ++ K GL+ RL + ++ +R +N Sbjct: 295 --KFTEDYAKAEGLDFHTDDDYFAYKCREGLKKRLKLVPETRHEEYRERLEREIEIIN-- 350 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +MKF GY LIV DF++ AK IPVGPGRGS AGS+ A+ L ITDIDPL+++LLFERFL Sbjct: 351 -KMKFPGYMLIVWDFVRAAKDRGIPVGPGRGSAAGSLVAFCLEITDIDPLKYALLFERFL 409 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DFCQ RR E++ YV NKYG VAQ+ITFG+LQAK +RDV R + MP Sbjct: 410 NPERVSMPDIDMDFCQSRRGEILDYVVNKYGRYNVAQVITFGTLQAKGVIRDVARVMGMP 469 Query: 469 YSQVDRLCKLIPNDPAHPVSLQ-----------AIADDSRFREARLADPSVDRLLEISQK 517 Y + D + KLIP++ ++ + A + + +E ++ ++ E + Sbjct: 470 YGEADAMAKLIPDELGITLNGKGKEGTPDYKAGAFQKEPKIKELIDSNKEARKVWEFALL 529 Query: 518 LEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 LEGL R+A THAA +VI + L P+Y+ + TQ++MK++E LIKFDFLGL Sbjct: 530 LEGLKRNAGTHAAAVVIDSQKELWHKAPLYKPSGDETIATQYSMKYLEDVDLIKFDFLGL 589 Query: 577 KTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 KTLT+++ ++D + R K +D + + +D Y + + T+G+FQ+ES GM+ + + Sbjct: 590 KTLTVIRGAMDMIKVRYSKEIDFNALDVNDPAVYETIQSGNTIGLFQVESKGMQDLNKRL 649 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +P EDIIA+++LYRPGP+++ ++ + +RK+GK I+ P ++P+LK T GVI+YQE Sbjct: 650 KPTTFEDIIAVLALYRPGPMESGMLDDFIDRKHGKAPILYAFPELEPILKPTYGVIVYQE 709 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQI Q + G+SL AD++RRAMGKKIKEEMD+ K F +GA K G + + +F+L+ Sbjct: 710 QVMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFANGAEKRGFDRQKSEELFDLI 769 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSH+AAYA++++QT ++KT+YP EF+A+ +T E DN +K+ K+ +A++ Sbjct: 770 VKFAGYGFNKSHSAAYAMVTFQTTYLKTYYPHEFMASLLTSEQDNTDKVVKYVDEAKRLG 829 Query: 814 IQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869 I+++PP ++ ++F V G+ I + L AIKG G I+E A PF++LEDF Sbjct: 830 IKVLPPDISRSLLEFSVAEIEGEKVILFGLGAIKGAGEIALSKILEERAKAPFENLEDFL 889 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 R+D++K+N++ LESL+ +G++ FGYSR LL+ ++ I + ++ E+ + ++F Sbjct: 890 GRIDAQKVNKKALESLIKSGSMVGFGYSRRALLEQIEAINEASKESERAKRMAENSLFGD 949 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 + ++ +E F E E+ LGFY SGHPLD ++P L ++ + Sbjct: 950 SEEMIVARVEIENFEEYPLKRLLELEKETLGFYVSGHPLDDFRPELAEVNYTLSSQMEQI 1009 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 G+ V K ++KG+R G Sbjct: 1010 EDGSAALFIGKVEEVTTKFSKKGNRFG 1036 >gi|93006042|ref|YP_580479.1| DNA polymerase III, alpha subunit [Psychrobacter cryohalolentis K5] gi|92393720|gb|ABE74995.1| DNA polymerase III, alpha subunit [Psychrobacter cryohalolentis K5] Length = 1247 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1013 (38%), Positives = 597/1013 (58%), Gaps = 72/1013 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +HS YS+ + + + ++ AAD Q A+A+TD +NL++ ++F + AGI+P Sbjct: 2 AFVHLGIHSEYSITDSIVRIKPLVKAAAADNQSALALTDLSNLYATVKFYRACLGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS------RMYLLD 123 IIG ++ ++ +D + LL EGYQ + +VS R ++ Sbjct: 62 IIGSEVIMENEDT---------------RLTLLAMNNEGYQNITRIVSLGFTEGRADPVN 106 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G ++ G +++ T S + +A + + A++ L ++ F DRLY Sbjct: 107 HGTPVIKRSHILAHAAGV--IVLFTEKSD--VGQALIGSMPEKADELLTEWQAQFADRLY 162 Query: 184 VNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++R G D + ++ + A H +P++A N+ FL ++D++AH+ + +A S V++ Sbjct: 163 FAIKRTNRTGEDAFIKAAIHSGA-KHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLA 221 Query: 242 QKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++RP+ D YLK +++M +F+D+P+ ++NT+ +A RC+ L + +LP F E Sbjct: 222 DQNRPQTYSDAQYLKTQAQMEQLFADIPQVIDNTLRLATRCNVSLTLGINVLPEFPVPEG 281 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYRQR----LDFELNVIARMKFS 354 + E+ R ++ GL+ RL + A+ + D RQR L++EL VI M F Sbjct: 282 E----TTESFFRLESQRGLDNRLDKLFPVDARSDNWSDIRQRYDDRLEYELKVILSMGFP 337 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+S Sbjct: 338 GYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVS 397 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFC + RD VI YV YG E V+QIITFG++ AKA +RDV RA Y + Sbjct: 398 MPDFDIDFCIEGRDRVIDYVAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASK 457 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD-----RLLEISQKLEGLYRHASTHA 529 + KLIP P +S QA+ + + ++ ++D + E++ KLEG+ R+ HA Sbjct: 458 MSKLIPKTPGITLS-QALEQEPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHA 516 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 G++I ++ +Y D V+QF+ +E GL+KFDFLGL+ LT++ ++ + Sbjct: 517 GGVLIAPHRITDFSAIYCDDEGHR-VSQFDKDDVEAVGLVKFDFLGLRNLTVIDAAVRNI 575 Query: 590 AQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 R K + L +P DD + Y LL T +FQLES GM++ L +QP IED+I Sbjct: 576 NLRRAKEGKDALVLEDLPLDDAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVI 635 Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 A+ +LYRPGP+D +V Y +RK+G+E+++ HP ++P+L+ T GVI+YQEQVMQI+Q++ Sbjct: 636 AMCALYRPGPLDAGMVEMYIDRKHGREEVIYDHPNLEPILENTNGVIVYQEQVMQISQVM 695 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GYSL AD+LRRAMGKK EEM KQ++ F++GA+ GI + + +F+L+ KFA YGFN Sbjct: 696 AGYSLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFN 755 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821 +SH+AAY V++YQTA++K +YP EF+AA +T +M+N + + F D R+ F++ ++ PSV Sbjct: 756 RSHSAAYGVLAYQTAYLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFDLTVVNPSV 815 Query: 822 NTPCVDFKVGD--NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878 N F V D I Y L AIKGVG I++A + PF L DFC RVD KK+N Sbjct: 816 NRSEWHF-VADTPTNIIYGLGAIKGVGEGAVESIVDARRREGPFKDLYDFCRRVDIKKVN 874 Query: 879 RRVLESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 +R LE+LV AG D F + R L+ L + + A+ +NR + Sbjct: 875 KRTLEALVSAGCFDDFAATLRPDLPADEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMD 934 Query: 926 IFAHEKGTF-SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 +F G + + + + R + E+ LG Y +GHP+D Y+ L++ Sbjct: 935 LFGEMDGVVAAPPLVMTPELIWGDKHRLKAEKNTLGLYLTGHPIDEYRDELKR 987 >gi|321312457|ref|YP_004204744.1| DNA polymerase III DnaE [Bacillus subtilis BSn5] gi|320018731|gb|ADV93717.1| DNA polymerase III DnaE [Bacillus subtilis BSn5] Length = 1115 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1039 (38%), Positives = 602/1039 (57%), Gaps = 63/1039 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQVHS YSLL A ++ ++ + ++A+TD + ++ A++F + A GI P Sbjct: 2 SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + D + P +VLL + GYQ L+++ S + Q K Sbjct: 62 IIGLTASVFTDD---------SELEAYP-LVLLAKSNTGYQNLLKISSVL----QSKSKG 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 + WL EG+I +T G G I+ + A + L F+ +FG Y + Q Sbjct: 108 GLKPKWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 +G ++ Q+++L+ +P+ AT + ++ +ED A+ L A+ ++ D P Sbjct: 167 FKG-NQVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLT--DAPAE 223 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 PD LK EM +I+ + PEAL+ +VEIA +C + + LP F + Sbjct: 224 DLPDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSA 279 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ L + + GL R G + Y +RL +EL+VI RMKFS YFLIV DF++ A Sbjct: 280 DDYLTDICMEGLRSRF-------GKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHA 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GPGRGS AGS+ AY L ITD+DP++ LLFERFLNP+R+SMPD DIDF RR Sbjct: 333 HEKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI+YVQ KYG VAQIITFG+L AKAALRDVGR + + D+L KLIP+ P + Sbjct: 393 DEVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTL 452 Query: 488 S---LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 Q+ D R RE+ L + ++ I++K+EGL RHASTHAAG+V+ + PL+ +VP Sbjct: 453 DEARQQSPQLDKRLRESSL----LQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVP 508 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603 + ++ + +TQ+ M +E GL+K DFLGL+ LTL++ + + +K+DLS I + Sbjct: 509 L-QEGHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISY 567 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 D +T+ LL+ T GIFQLES+GMR L+ + P +EDI+A+ +LYRPGP++NI ++ + Sbjct: 568 SDDKTFSLLSKGDTTGIFQLESAGMRSVLKRLTPSGLEDIVAVNALYRPGPMENIPLFID 627 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ + H + +L++T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK KE Sbjct: 628 RKHGRAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKE 687 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +D+++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I Q A++K HY Sbjct: 688 ILDRERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHY 747 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P+ F+ +T + N +KI ++ +A+ I+I+PPSVN F V + + YSL AIK Sbjct: 748 PLYFMCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIK 807 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG + + I +A +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R LL Sbjct: 808 SVGVSAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLA 867 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN--------- 954 S+D ++A+ + + G F D E FS++ V E Sbjct: 868 SIDVALEHAELFAADDD---------QMGLFLD----ESFSIKPKYVETEELPLVDLLAF 914 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LG YFS HPL ++ L G ++ ++ + L ++ + +T+ G Sbjct: 915 EKETLGIYFSNHPLSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQN 973 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++T S+ E EA FP Sbjct: 974 MAFLTLSDETGEMEAVVFP 992 >gi|294782977|ref|ZP_06748303.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 1_1_41FAA] gi|294481618|gb|EFG29393.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 1_1_41FAA] Length = 1133 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/995 (38%), Positives = 597/995 (60%), Gaps = 55/995 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSLLEG S+++ L + ++A+TD N+F A+EF +KA GI+P Sbjct: 4 NFVHLNLHTEYSLLEGVNSIDSFLTRAKELGMNSLAVTDYANMFCAIEFYEKAKKMGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + ++ + ++ LL EGY+ L++L S +Y + + + Sbjct: 64 IIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELYK-KKDNREL 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L+E ++GLI L+ G I +A N S+ +K + + ++F + Y+ +Q Sbjct: 112 RISKEILKE-HSKGLIALSSSMKGEIGKAILMNFPSEKLDKIVDEYIEIFSKENFYLEIQ 170 Query: 188 RHRGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + E++V+ ++A + LVATNN ++ + YE D+++ + + Sbjct: 171 A----NELLETKVINDKFYEIAKLKNIELVATNNVHYVDRDGYELQDIVICIQSGWKLKD 226 Query: 243 KDRPR-VTPDHYLKNRSEMV-SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K+R R V+ + YLK++ EM S+ +A+ENT IA C+ ++ P + Sbjct: 227 KNRKRAVSKELYLKSKEEMQRSLDERFHKAIENTNYIASLCNLEIKFGNLQFPYY----- 281 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQ------GAIAKGYHAQDYRQRLDFELNVIARMKFS 354 E+ N+ +G++ L I K +D +RL++EL+VI +M +S Sbjct: 282 ---------EVPNQ-YSGMDEYLKSICYENIKKIYKENLTKDILERLEYELSVIIKMGYS 331 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYF++V DFI +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S Sbjct: 332 GYFIVVWDFIAYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 391 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD DID C++RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L + ++DR Sbjct: 392 MPDIDIDICRERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDR 451 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 L KL+ + +L+ + ++ D + +++++S ++E RH STHAAGI+I Sbjct: 452 LSKLVSSFQTLEKTLKENVEVAKL---YTTDIELQKVIDLSIRIENKIRHVSTHAAGILI 508 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593 L + VP+Y D + + TQ+ MK +E GL+K DFLGLK L+ +Q+++D++ + + Sbjct: 509 TKEDLDRTVPIYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKN 568 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + ++L IP DD + + +L+ + G+FQLES+G+R+ ++ ++P+ +EDI+AL++LYRPG Sbjct: 569 IDIELYKIPLDDKKVFEMLSQGDSTGVFQLESTGIRKIMKRLKPNKLEDIVALLALYRPG 628 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+ + +V + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD Sbjct: 629 PLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEAD 688 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK M + +E+FI A +N ++ A IFEL+ KFA YGFNKSH+ AYA+ Sbjct: 689 LLRRAMGKKNFAIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAM 748 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISY TA++K +YP + AA MT E+ I + DA++ I+I PP+VNTP F++ Sbjct: 749 ISYWTAYLKAYYPAFYFAAIMTSEISETGDIAYYFNDAKEHKIRIYPPNVNTPSAYFEIK 808 Query: 832 DNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 ++ I YSLAAIK +G A+ I+E + + L++F R +N+R LE+L+ +GA Sbjct: 809 NDGISYSLAAIKNLGLNLAKKIVEDYEKNGVYSKLDEFLIRNKKNGINKRALEALILSGA 868 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 LD +R + S+D + Y K + N+F T +K TL N Sbjct: 869 LDELEGNRKEKFLSIDKVLDYVSKASKTDEIQQMNLFGEASKTI-NKFTLTSCEDFNLDE 927 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 + E+ LGFY S HPLD YK I+ I E Sbjct: 928 KLTKEKEFLGFYLSSHPLDKYKDIITTFSINKLSE 962 >gi|310658953|ref|YP_003936674.1| DNA polymerase III dnae [Clostridium sticklandii DSM 519] gi|308825731|emb|CBH21769.1| DNA polymerase III DnaE [Clostridium sticklandii] Length = 1150 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/995 (38%), Positives = 590/995 (59%), Gaps = 58/995 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+G ++ ++ + A+AITD +F ++F +KA A GI+PI Sbjct: 5 FVHLHLHTQYSLLDGFAKIDKLIQRAKDYSMDAVAITDHGVMFGVIDFYKKAKANGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IGC++ T + K ++LL +GY+ L++LVS M ++ Sbjct: 65 IGCEVY-----TASRTYKDKEGIDKKSGHLILLAENEKGYRNLVKLVS-MGFVEGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 RI L+E +EGLI L+ +G I + + A++ L + +FG+ ++ LQ Sbjct: 119 RIDYKILKE-HSEGLIGLSACLAGEIQQKLMNGQYKEAKEIALMLRDIFGENNFFLELQD 177 Query: 189 HRGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 H RE + V +L+ +PLVATN+ ++ ++D + HD+L+ + ++ + Sbjct: 178 HG----IREQKKVNIFLRKLSQDTGIPLVATNDVHYVDKDDAKTHDILLCIQTGKTLADE 233 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + D Y K++SEM +F D +AL NT EIA RC+ + LP + E Sbjct: 234 HKMEFETDEFYFKSQSEMYELFPDDAQALRNTWEIANRCNVDFDFNTIHLPEYSVPE--- 290 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIV 360 NKA + +L Q + Y D + +RLDFELNVI M + YFLIV Sbjct: 291 ----------NKAPSEYLRQLCQDGLVDRYKTIDSKLQERLDFELNVIENMGYVEYFLIV 340 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI ++K++NI VGPGRGS AGS+ AY L ITDIDP+++ LLFERFLNP+R+SMPD DI Sbjct: 341 WDFIDFSKRSNIMVGPGRGSAAGSIVAYTLGITDIDPIKYGLLFERFLNPERVSMPDIDI 400 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++R++VI YV+ KYG + V+QIITFG+L A++++RDVGR + + YS VD++ K IP Sbjct: 401 DFCYEKREKVIDYVREKYGSDHVSQIITFGTLGARSSIRDVGRVMGISYSDVDKVAKEIP 460 Query: 481 NDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 A ++++ D + R+ D L+++++ +EGL RHASTHAAG+VI P+ Sbjct: 461 --FALNMTIEKALDLNPNLRKIYNEDEKARELIDVAKNVEGLPRHASTHAAGVVISKEPV 518 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDL 598 VP+Y + + TQF M +E+ GL+K DFLGL+TLT++QK++D L R + +D Sbjct: 519 DHYVPLY--TQDNAVTTQFPMTTLEELGLLKMDFLGLRTLTVIQKAIDIILRTRNITIDF 576 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S +DD Y LL++ TLG+FQLESSGMRQ ++ ++P+ EDI+A +SLYRPGP+D+I Sbjct: 577 SNSDYDDKAVYELLSSGDTLGVFQLESSGMRQFMKELKPETFEDIVAGISLYRPGPMDSI 636 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 +Y KN + +V H I P+L+ T+G+++YQEQVMQ+ + L+GYS +D++RRAM Sbjct: 637 PLYIKNKNNPDSVVYDHESIRPILEVTRGILVYQEQVMQVVRDLAGYSYGRSDLVRRAMS 696 Query: 719 KKIKEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 KK + M++++ F I+G +NGI + IA IF+ + FA+Y FNKSHA Sbjct: 697 KKKMDVMEEERRNFVYGKEDENGNIEINGCVRNGIPEKIANKIFDDMIDFANYAFNKSHA 756 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYAV++Y+TA++K +YPVEF+AA MT M N +K+ ++ ++ + I+++ P VN Sbjct: 757 AAYAVLAYETAYLKAYYPVEFMAAIMTSVMGNTDKVVEYIRECERLKIEVLKPDVNKSFT 816 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 +F V +N I YSL A+K VG +++ +K + +DF R+D K +N+R +ESL Sbjct: 817 EFAVENNHIRYSLCAVKNVGVHFVENLVAEREEKGIYIDFDDFAKRLDKKDINKRTIESL 876 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKF 943 + GA D +R ++ + I KN ++F + + I L +F Sbjct: 877 IKCGAFDELIPNRASIMAGYEKILSSISNSRKNNIEGQVSLFDTQLQNEVKAKIIELSEF 936 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 N + + E+ VLG Y SGHPL+ YK +L ++ Sbjct: 937 ---NDKEKLQMEKEVLGLYLSGHPLNEYKDMLSRI 968 >gi|78184874|ref|YP_377309.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9902] gi|78169168|gb|ABB26265.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9902] Length = 1172 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1058 (37%), Positives = 606/1058 (57%), Gaps = 51/1058 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L +++++ PAIA+TD ++ A+E + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P +V+L A GY+ L++L S +L Sbjct: 62 IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNAIGYRNLVKLTSISHLRGMRG 114 Query: 127 QSV--RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + R C+ L + +EGLI+ T G I +A +VA ++ +FG+ Y Sbjct: 115 RGIFSRACVDKDLLQRHSEGLIIATACLGGEIPQAILRGRPEVARDVARWYQDVFGEDFY 174 Query: 184 VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR S++V++A ++ LVATN++ +L+++D EAHD L+ V ++S Sbjct: 175 LEIQDHGSPEDRIVNSEIVKIAEELDIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R T Y+K EM +F+D + +A+ NT ++A + + +PRF Sbjct: 235 EKRLRYTGTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFP 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + LR + GL RL + A++Y R+ EL ++ +M F Y Sbjct: 295 IPD----GHTAVTYLREVTLQGLRDRLELKS--DDPIAENYADRMSHELEIMEQMGFPTY 348 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+V D+I++A++ NIPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMP Sbjct: 349 FLVVWDYIRFAREQNIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMP 408 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL Sbjct: 409 DIDTDFCIERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468 Query: 477 KLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 KLIP P L+A I D+S FRE DP V R ++++ ++EG + HAAG+ Sbjct: 469 KLIPVVRGKPAKLKAMIGDESPNPEFREKYQGDPVVKRWVDMAMRIEGTNKTFGVHAAGV 528 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQ 591 VI PL QLVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + Sbjct: 529 VIAADPLDQLVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVS 587 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G ++D +P D +T+ LL GIFQLESSGMRQ + ++P +EDI ++++LYR Sbjct: 588 SGTRIDPDKLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYR 647 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+D ++ + NRK+G+E I H +++P+L ET G+++YQEQ+M+IAQ L+GYSL + Sbjct: 648 PGPLDAGLIPKFINRKHGREAIDFAHEILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQ 707 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EM K + F+ GA K G+ ++ +F+ + FA+Y FNKSH+ AY Sbjct: 708 ADLLRRAMGKKKVSEMQKHRGIFVEGAKKRGVDVKVSDELFDQMVLFAEYCFNKSHSTAY 767 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 ++YQTA++K HYPV ++AA +T+ +K++++ + I++MPP +N +DF Sbjct: 768 GAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDFT 827 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +RI + L+A++ +G R ++E+ D PF SL D C R+ S LNRR LESL+ Sbjct: 828 PNGDRILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLIHC 887 Query: 889 GALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL 940 GA+D +R QL+ LD + +A K+R + N+F A + G + Sbjct: 888 GAMDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSMAP 947 Query: 941 EKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIRGNNI 995 + V + S + E+ ++GFY S HPL P +L +G+ EE + + I Sbjct: 948 KAAPVPDYPPSEKLRLEKDLVGFYLSDHPLKQLTPSSRLLAPIGLGSLEEQPDKAKVSAI 1007 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ +Q TRKG R+ + + EA FP Sbjct: 1008 ---TMITELRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042 >gi|304436411|ref|ZP_07396386.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370575|gb|EFM24225.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 1142 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1043 (37%), Positives = 612/1043 (58%), Gaps = 44/1043 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S +F HL VH+ YSLL+GA + +++ + A+A+TD ++ A+ F ++A A GI Sbjct: 12 SMAFAHLHVHTEYSLLDGASRIKDLVRRTKELGMDAVAMTDHGVMYGAVAFYKEAKAQGI 71 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGC++ + + + T + ++LL GY+ L++L+S + ++ Sbjct: 72 HPIIGCEVYLAPRQRQERAEVNGTRYY---HLILLAENECGYRNLVQLIS-LANIEGYYY 127 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 RI L +GLI L+ +G I +A ++A++ + ++ +FG D ++ + Sbjct: 128 KPRIDKELLHRF-HDGLIALSACVAGEIPQAILRGDMELADQLVREYRDIFGKDNFFLEV 186 Query: 187 QRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H + ++ ++ LA +++ L ATN+ ++ ED E HD+L+ V ++ DR Sbjct: 187 QNHGLPEEMTVNRALRDLAKKYDIGLTATNDVHYVHAEDSEFHDILLCVQTGRTLNDPDR 246 Query: 246 PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R + PD+YLK+ EM +F+D P A+ENT +IA RC LP + D Sbjct: 247 MRFSGPDYYLKSEEEMSDLFTDYPGAIENTAKIAARCQVDFTFGELQLPYY---PLPDGY 303 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++ LR + L R + RQRLD+EL VI +M ++ YFLIV DFI Sbjct: 304 TTDDAYLRALCIERLPARYPTAR-------DEVRQRLDYELGVIHKMGYASYFLIVWDFI 356 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A+ + + VGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDF Sbjct: 357 NYARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLQYALLFERFLNPERVSMPDIDIDFDD 416 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 R VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+ +V + KL+P + Sbjct: 417 INRGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFGEVSTITKLVPAELN 476 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ + + FR+ D R++++++K+EGL R+ S HAAG+VI PL++ VP Sbjct: 477 ITLD-RALEESADFRKRYEEDEKTHRVIDLARKIEGLPRNTSIHAAGVVIAKSPLTRQVP 535 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 ++ V VT+++ +E GL+K DFLGL+TLT++ ++ + Q G+++D+ IP Sbjct: 536 VW--VSDGTLVTEYDKDDVEALGLLKMDFLGLRTLTIIDDAVKNIRQSHGIELDVDKIPL 593 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 D +T +L T +FQ+ES+GM ++ +QP D+I V+LYRPGP+ + +V + Sbjct: 594 VDEKTSRMLCAGDTGAVFQMESTGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDF 653 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 + +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK Sbjct: 654 IDGLHGKKEVVYLHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKK 713 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E + QKE F+ G KNGI +A +IF+LL FADYGFNKSH+AAY ++++QTA++K Sbjct: 714 HELLMAQKEIFLQGCEKNGIEAALANHIFDLLTHFADYGFNKSHSAAYGLLAWQTAYLKA 773 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEF+A +T MD +KI + Q Q NI+I+PP +N F + I + LAA Sbjct: 774 HYPVEFMAGVLTSIMDKTDKIPVYIQLCHQMNIKILPPDINASTAGFSIESGAIRFGLAA 833 Query: 842 IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 ++ VG T + + SA+ F SL DFC+R+D + LN+R +ESL+ GA D G R Q Sbjct: 834 VRNVGETAIESMEQVRSANGSFRSLIDFCARIDVRILNKRAIESLIKCGAFDSLGTERNQ 893 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV---------R 951 LL SLD+ + A +++R + +F + T+E ++V R Sbjct: 894 LLSSLDSAMQDAARTQRDRISGQMGLFGQD--------TMESIHQVQNAVEVPPSTPRER 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 E+ GFY +GHPLD Y+ L + I + R +R+ ++ + ++ T+ Sbjct: 946 LMWEKEATGFYITGHPLDDYRDTLSCLLPISDILTGLCKDR-QLVRIGGILTNTKRYTTK 1004 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 KG + + + + E FP Sbjct: 1005 KGDTMLFAEMEDYSGHIELTVFP 1027 >gi|294501515|ref|YP_003565215.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551] gi|294351452|gb|ADE71781.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551] Length = 1118 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1032 (37%), Positives = 606/1032 (58%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ+ SSYSLL ++ ++ +++ AIA+TD N ++ + F + AGI+PI Sbjct: 3 FVHLQLQSSYSLLSSSVRIHELVETAKKMNYEAIALTDENVMYGVIPFYKACVKAGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L I + + + +P +VLL +GY+ L++L S L Q K+ Sbjct: 63 IGLTLSILEHE------ESERAYP----LVLLAENDKGYENLLKLSS----LVQTKEKHG 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + WL + GLI +T G +G I+ N Q A++ L FKK++ LY+++QRH Sbjct: 109 VNKKWLHHY-SGGLIAITPGVTGEIETLLAENKLQDAKQVLQFFKKVYSQSLYISIQRHG 167 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-- 248 + + Q+ +LA +PLVATN +L +ED +A++ L A+ + + V Sbjct: 168 QDEAFINQQLTELAAEENIPLVATNQVKYLKKEDRDAYECLAAIRDGEKLHSDEDEEVKS 227 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + ++Y K+ EM +F D +E +++IARRC + + +P++ Sbjct: 228 KSSEYYFKSPDEMEDLFHDQHFLIEESIKIARRCELEISLGVMSIPKYPVPPS----VTS 283 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR GL+ R + Y +RLD+ELN+I M+FS YFLIV DF+ +A Sbjct: 284 SAYLRTLCEKGLQERFQ-------VITEQYEERLDYELNIIENMRFSDYFLIVWDFMNYA 336 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GPGRGS AGS+ +YAL IT++DP++ LLFERFLNP+R+SMPD DIDF ++R Sbjct: 337 HEHGILTGPGRGSAAGSLVSYALRITNVDPIQHQLLFERFLNPERISMPDIDIDFPDNKR 396 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D+VI+YV KYG VAQIITFG+L AKAA+RDVGR + ++++ K IP P Sbjct: 397 DQVIQYVTQKYGALHVAQIITFGTLAAKAAVRDVGRVMGFDQEALNKMSKAIPTKPG--T 454 Query: 488 SLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L++ DSR + L++ + I+ K+EGL RH STHAAG+VI ++PL+Q V + Sbjct: 455 TLKSALRDSRVLQDYLSENEARKQWYNIAMKIEGLPRHTSTHAAGVVISEKPLTQSVAV- 513 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 ++ D+ +TQ+ M+ ++ GL+K DFLGL+ LT+L L + + K+ LS IPF+D Sbjct: 514 QEGHDDVYLTQYPMEALQDVGLLKMDFLGLRNLTILDHILKKIERDMNRKLSLSHIPFND 573 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL+ T GIFQLES GMR+ L+ ++P +EDI+A+ +LYRPGP++NI Y RK Sbjct: 574 QKTFELLSKGDTTGIFQLESDGMRRVLQQLKPTELEDIVAVNALYRPGPMENIPTYIKRK 633 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G EK++ HP + +L+ T GVI+YQEQ+MQIA ++G+SL EAD+LRRA+ KK + + Sbjct: 634 HGVEKVIYDHPTLKDILQSTHGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKERAVL 693 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ FI G+ K G ++A +++L+ +FADYGFN+SHA AY++++YQ A++K HYP+ Sbjct: 694 DRERAHFIQGSKKKGYDLSVANRVYDLIVRFADYGFNRSHAVAYSMVAYQLAYLKAHYPL 753 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 +F +A +T + N KI ++ + ++ IQ++PPS+N F V I YSLAAIK + Sbjct: 754 QFFSALLTSVIGNEGKIAQYINELKRKKIQVLPPSINKSMYSFNVEGESIRYSLAAIKHI 813 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G + I E K F+ L DFC+RV K +N++ LE+L+ +G D FG +R LL ++ Sbjct: 814 GAAAMQEITEERKKKRFEDLFDFCARVSQKAVNKKALEALILSGGFDEFGENRATLLATI 873 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN----EQRVLGF 961 D ++A V + F + +L+ +E ++ E+ E+ +LGF Sbjct: 874 DVAFEHASLV-----------LPDDDFGFGAEFSLKPKYMEKEELKIEDRLQYEKDMLGF 922 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S HP Y+ + + + G + L V+ + +T+KG ++ ++ + Sbjct: 923 YLSSHPASQYEALNSFYSVVSLHDMKEYASGKAVSLLVFVLEIRVIRTKKGEQMAFLRIT 982 Query: 1022 EPAKEYEANFFP 1033 + + E E FP Sbjct: 983 DESGEGEVVAFP 994 >gi|209522938|ref|ZP_03271495.1| DNA polymerase III, alpha subunit [Arthrospira maxima CS-328] gi|209496525|gb|EDZ96823.1| DNA polymerase III, alpha subunit [Arthrospira maxima CS-328] Length = 1219 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1087 (36%), Positives = 628/1087 (57%), Gaps = 80/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++ + PAIA+TD ++ A+E + + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128 IIG ++ + + ++ + +G + V +L +GY+ L++L + +L QGK Sbjct: 62 IIGNEMYV-LNADVTVQQRGIKKYHQV----VLAKNTQGYKNLVKLTTISHLKGFQGKGI 116 Query: 129 -VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R C++ L E EGLI+ + G + +A +A + + +K++FGD Y+ + Sbjct: 117 FARPCINKELLEEYHEGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLEI 176 Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR +VQLA E+ +VATN+S F+S D EAHD L+ + ++++ +R Sbjct: 177 QDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDNR 236 Query: 246 PRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCS-FILQVHAPILPRFIEK 298 R + YLK+ EM+ +F D LP EA+ NT+E+A + + + P +P + Sbjct: 237 LRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPIP 296 Query: 299 ECDDIQKEEENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + L A GL+ RL AQG + YR+RL++EL ++ +M F+ YF Sbjct: 297 P----NHTADTYLEEIAWEGLKKRLNAQG---RSEIKPVYRERLEYELKMMQKMGFATYF 349 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+V D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD Sbjct: 350 LVVWDYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPD 409 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D DFC DRRDE+I+YV +KYG E+VAQIITF + +KA L+DV R L +PYS+ D++ K Sbjct: 410 IDTDFCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAK 469 Query: 478 LIPNDPAHPVSLQAIADDS----RFREA--------------RLADPSVDRLLEISQKLE 519 +IP P L+ + D F++A + +V + ++++ ++E Sbjct: 470 MIPVSRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIE 529 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G + HAAG+VI +PL ++VP+ R+ + +TQ+ M+ IE GL+K DFLGLK L Sbjct: 530 GTNKTFGVHAAGVVISKQPLDEIVPLQRNNDGSV-ITQYFMEDIEALGLLKMDFLGLKNL 588 Query: 580 TLLQKSLDFLAQRG--------------------VKVDLSLIPFDDHETYHLLTTKGTLG 619 T++Q++L++++Q K + +P D +TY +L G Sbjct: 589 TIIQRTLNYISQNHHLDIDPYNLAADERKAMDILAKGAVKKMPEDVAKTYKILERGDLEG 648 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPL 677 +FQLESSGMRQ ++ ++P IEDI ++++LYRPGP+D ++ + NRK+ +E I H L Sbjct: 649 LFQLESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKL 708 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++P+L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK EM K +E FI GA+ Sbjct: 709 LEPILNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGAT 768 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 +NG+ + IA ++F+ + KFA+Y FNKSH+ AY I+YQTA++K +YP E++AA +T Sbjct: 769 RNGVPQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSG 828 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857 N +K++ + + + I ++PP +N VDF +NRI + L+AIK VG H++ Sbjct: 829 NTDKVRAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVR 888 Query: 858 AD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + PF SL D C R++ + +N R LESL+ +GA D +R Q ++ L+ + +AQ Sbjct: 889 EEGGPFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRA 948 Query: 917 KNRTNKHENIF------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 KNR N+F E + S + K + + E+ +LGFY S HPL Sbjct: 949 KNREIGQTNLFDLVNYATTESNSPSGEPAFPKGDDYAPKDKLQFEKELLGFYVSDHPLKS 1008 Query: 971 YKPILRKMGIKGYEESVATIRGNN----IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 L GI ++ + +++A ++++ + T+KG R+ ++ + + Sbjct: 1009 ----LLDSGILPDNVTLDKLPEQKSKAAVKVAVILINIKPHLTKKGDRMAFLLLEDLTGQ 1064 Query: 1027 YEANFFP 1033 +A FP Sbjct: 1065 IDAVVFP 1071 >gi|18309342|ref|NP_561276.1| DNA polymerase III DnaE [Clostridium perfringens str. 13] gi|18144018|dbj|BAB80066.1| DNA polymerase III, subunit alpha [Clostridium perfringens str. 13] Length = 1192 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1010 (37%), Positives = 593/1010 (58%), Gaps = 64/1010 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +HS YSLL+G+ + ++ + +IA+TD ++ ++ ++A A GI+PI Sbjct: 6 FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65 Query: 71 IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC++ + + +K ++ + +VLLV +GY+ L+++VS + ++ Sbjct: 66 LGCEVYVVPKSRKIKSNDEDNKTY----HLVLLVKNEKGYENLMKIVS-VASIEGFYYKP 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI +L+E +EG+I L+ G + +A + A + + ++ F D Y+ LQ H Sbjct: 121 RIDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAAIFYRDTFKDGFYLELQNH 179 Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + ++V +QLA +PLVATN+ ++++ED +AHD+LM + V +R R Sbjct: 180 GIEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRY 239 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----------I 296 D YLK+ EM +F +PEALENT++IA C+F + H LP+F + Sbjct: 240 PSDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGVEPFEYL 299 Query: 297 EKECDD--IQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 K C D I + EE L+ K + ++ G ++ +RL++EL VI +M + Sbjct: 300 RKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGE--NNDKVKEDIERLEYELGVIKQMGY 357 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIV DFI++A N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R+ Sbjct: 358 VDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPERV 417 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC + R VI YV KYGH+ V+QIITFG++ A+A +RDVGRA+ Y++VD Sbjct: 418 SMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEVD 477 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 R+ K IP + +A+ + + + V L+++S++LEGL RH+STHAAG+V Sbjct: 478 RIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVRELIDVSRRLEGLPRHSSTHAAGVV 536 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QR 592 I +PL + VP+ ++ S VTQF+M +E+ GL+K DFLGL+TLT+++ ++D + R Sbjct: 537 IASQPLVEYVPLQKNDES--IVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYNR 594 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 GV +DL + FDD E Y ++ T+G+FQLES+GM ++ ++PDC+EDIIA +SLYRP Sbjct: 595 GVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYRP 654 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+ I Y + K + + I P ++ +L T GV++YQEQVM+I + L+GYS+ +D+ Sbjct: 655 GPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSDL 714 Query: 713 LRRAMGKKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYG 760 +RRAM KK + M+++++ FI G +NGIS A IF+ + FA Y Sbjct: 715 VRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASYA 774 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAAAYAVI +QTA++ +YPVEFLAA + M N +K+ ++ + A + IQ++PP Sbjct: 775 FNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPPD 834 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879 +N F V + I + + AIK VG +I ++ +K F SL DFC+++D +N+ Sbjct: 835 INESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGKFTSLMDFCNKIDLSIVNK 894 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R +ESL+ AG D R QLL + I K + ++F Sbjct: 895 RSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG----------A 944 Query: 940 LEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVYKPILRK 977 L++ S N +R+ N E+ + G Y SGHPLD Y+ L++ Sbjct: 945 LQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKE 994 >gi|126641511|ref|YP_001084495.1| DNA polymerase III alpha chain [Acinetobacter baumannii ATCC 17978] Length = 1155 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/987 (38%), Positives = 577/987 (58%), Gaps = 58/987 (5%) Query: 42 PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101 PA+A+TD +NL +A++F GI+PI+G + ++ + L Sbjct: 2 PALALTDLSNLHAAVKFYNSCLKKGIKPILGSTIRLNDAQH---------------RATL 46 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICL--SWLQEIGTEGLIMLTGGSSGPIDRAF 159 L + G++ L E+VSR ++ +G+Q C+ W+ E + +++L G + + Sbjct: 47 LAMSDIGWKGLTEIVSRGFI--EGQQLSIPCVQKEWVLEQHQDIIVLL--GQHSDVGQML 102 Query: 160 FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ----LAYTHELPLVATN 215 ++ Q AE L + + FG+R+Y+ L R DR E +Q LA + + +VA N Sbjct: 103 CSSNPQKAEPLLEEWIEKFGNRVYLALTRT---DRPGEEDFIQEAAKLAAKYNIGVVAHN 159 Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENT 274 + F+ +ED+EAH+ + +A V++ RPR+ +P+ Y K EM+ +FSD+P A+ENT Sbjct: 160 DVHFIEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQYFKTSDEMIELFSDIPSAIENT 219 Query: 275 VEIARRCSFILQVHAPILPRF-------IEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327 +IA+RC+ L++ LP + I+ + + KE E R + +E R Sbjct: 220 YQIAKRCNVTLKLGTYFLPEYPIPDGFTIDTYFEHLSKEGLEE-RLNYLYPVEKRGEDWP 278 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387 + + Y +R+D+E+ +I +M F GYFLIV DFIQWAK N +PVGPGRGSGAGS+ A Sbjct: 279 EIR----KPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPVGPGRGSGAGSLVA 334 Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 Y+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFC RD VI YV YG E V+QI Sbjct: 335 YSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSRTYGREAVSQIA 394 Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507 TFG++ AK A+RDV R L Y DR+ K++P P AI + + ++ + +PS Sbjct: 395 TFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLATAIEMEPQLKDI-VTNPS 453 Query: 508 ------VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 + E++ KLEG+ R+ HA G+VI ++ + D V Q++ Sbjct: 454 NPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCDADGTNRVAQYDKD 513 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDDHETYHLLTTKGTL 618 +E AGL+KFDFLGL+ LT+++ ++ + + +++S +P DD + Y + T Sbjct: 514 DVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLNISHVPLDDPKAYSVFADANTT 573 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 +FQ ES GM++ L+ +P E+IIA VSLYRPGP+D I + +R +G E +HPL+ Sbjct: 574 AVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRMHGGE-FEYLHPLL 632 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + +L+ T G+++YQEQVMQ AQ+ +GY+L AD+LRRAMGKK EEM KQ++ F+ GA + Sbjct: 633 EGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMVKQRQIFLEGAGQ 692 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y TAW+K HYP EF+AA M+ EM N Sbjct: 693 KGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAEFMAAVMSSEMQN 752 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEAS 857 + + D R ++++PPSVN F D++ I Y L AIKGVG + ++++ Sbjct: 753 TDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDKTIVYGLGAIKGVGEQAMQSVIDSR 812 Query: 858 ADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + P+ L DFC R+D KK+N+R LE+L+ AGALDC G R L+ L + A+ Sbjct: 813 RQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIERSSLMAQLPEAVQAAEQAR 872 Query: 917 KNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 NR + ++F E+ ++ +S E VR + E+ LG Y +GHP+DVY+ L Sbjct: 873 SNRESGIMDLFGEVEEVQRKPAKPVKPWSDE---VRLKGEKDTLGLYLTGHPIDVYRQEL 929 Query: 976 RKMGIKGYEESVATIRGNNIRLAAMVV 1002 + E AT RG A +V+ Sbjct: 930 KAFIPAKLNEITATRRGVTTVYAGLVL 956 >gi|256028238|ref|ZP_05442072.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289766170|ref|ZP_06525548.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289717725|gb|EFD81737.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] Length = 1133 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1023 (38%), Positives = 603/1023 (58%), Gaps = 61/1023 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSL EG S++N L K ++A+TD N+F A+EF QKA GI+P Sbjct: 4 NFVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + +D + S+ LL GY+ L++L S +Y ++ ++ + Sbjct: 64 IIGLELPVFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNLQ 187 ++ L+E ++ LI + +G I +A NSS ++ + ++F + Y+ +Q Sbjct: 112 KLNKEILKEY-SQDLIAFSSSMNGEIGKAILTNSSDEKIDSIINEYIEIFSKENFYLEIQ 170 Query: 188 RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + + + + LA + L LVATNN ++ + YE D+++ + V +K+R Sbjct: 171 ANELLETKIINDKFYDLAKFYNLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRK 230 Query: 247 R-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R ++ + YLK++ EM + +A+EN IA C+ + P + ++ Sbjct: 231 RTISKELYLKSKDEMKRFLGEKFEKAIENANYIADLCNIEITFGNLQFPYY------EVP 284 Query: 305 KEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFL 358 E +G++ L I K Y +D RL++EL+VI +M +SGYF+ Sbjct: 285 SE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYSGYFI 335 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 +V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD Sbjct: 336 VVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDI 395 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+L KL Sbjct: 396 DIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKL 455 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 I P + + + ++ + D + ++++++ ++E RH STHAAGI+I Sbjct: 456 IS--PFQTLE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKED 512 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 L + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VD Sbjct: 513 LDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVD 572 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPGP+ + Sbjct: 573 LYKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQS 632 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRR Sbjct: 633 GMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRR 692 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ AYA+ISY Sbjct: 693 AMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYW 752 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA+ K HYP + AA MT E+ I + DA++ +++ P++N+P F+V + I Sbjct: 753 TAYFKVHYPAYYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNINSPSAYFEVKNEGI 812 Query: 836 YYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GALD Sbjct: 813 TYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEI 872 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVENSSVR 951 +R + S+D + Y+ K + N+F T DK L E F+++ + Sbjct: 873 KGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDE---K 928 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-------SVATIRGNNIRLAAMVVSK 1004 E+ LGFY S HPLD YK +L IK E SV T G L ++ K Sbjct: 929 LNKEKEFLGFYLSSHPLDRYKDVLTTFSIKKLSEFDLEGNQSVKTF-GTITNLKKIITKK 987 Query: 1005 QQK 1007 +++ Sbjct: 988 EEQ 990 >gi|34763539|ref|ZP_00144477.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886788|gb|EAA23923.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 1093 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/989 (38%), Positives = 594/989 (60%), Gaps = 63/989 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSL EG S+++ L K ++A+TD N+F A+EF QKA GI+P Sbjct: 3 NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMSSLAVTDYANMFCAVEFYQKAKKMGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L I +D + S+ LL GY+ L++L S +Y ++ ++ + Sbjct: 63 IIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNLQ 187 +I L+E ++ LI L+ +G I +A NSS ++ + ++F + Y+ +Q Sbjct: 111 KINKEVLKEY-SQDLIALSSSINGEIGKAILTNSSDEKIDSIINEYIEIFSKENFYLEIQ 169 Query: 188 RHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 E++++ LA H+L LVATNN ++ + YE D+++ + V + Sbjct: 170 A----SELSETKIINDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKE 225 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K+R R ++ + YLK++ EM + +A+EN IA C+ + P + Sbjct: 226 KNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANHIADLCNVEISFGNLQFPYY----- 280 Query: 301 DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354 ++ E +G++ L I K Y +D RL++EL+VI +M +S Sbjct: 281 -EVPSE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYS 330 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYF++V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S Sbjct: 331 GYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 390 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+ Sbjct: 391 MPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDK 450 Query: 475 LCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 L KL+ +H +L+ + ++ + D + ++++++ ++E RH STHAAGI+ Sbjct: 451 LAKLV----SHSQTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGIL 506 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592 I L + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + Sbjct: 507 ITKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYK 566 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 + VDL IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRP Sbjct: 567 NIDVDLYKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRP 626 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+ + +V + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EA Sbjct: 627 GPLQSGMVDDFINRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLGEA 686 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ AYA Sbjct: 687 DLLRRAMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYA 746 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +ISY TA+ K HYP + AA MT E+ I + DA++ I++ P++N+P F+V Sbjct: 747 MISYWTAYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSSYFEV 806 Query: 831 GDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +G Sbjct: 807 KNEGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSG 866 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVE 946 ALD +R + S+D + Y+ K + N+F T D+ L E FS++ Sbjct: 867 ALDEIKGNRKEKFLSIDKVLDYSSKASKTDEIQQMNLFGEATKTI-DRFNLAISEDFSLD 925 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 + E+ LGFY S HPLD +K I+ Sbjct: 926 E---KLNKEKEFLGFYLSSHPLDRHKDII 951 >gi|167037102|ref|YP_001664680.1| DNA polymerase III DnaE [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115517|ref|YP_004185676.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855936|gb|ABY94344.1| DNA polymerase III, alpha subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928608|gb|ADV79293.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1145 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1056 (37%), Positives = 619/1056 (58%), Gaps = 59/1056 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61 Query: 71 IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IGC++ + MQD + N+ +VLL GY+ L+++V+ + ++ Sbjct: 62 IGCEIYVAPRSMQDREYGIDNENY-------HLVLLAKDMTGYKNLMKIVT-VASIEGFY 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 R+ +L+E +EGLI L+ +G + + A++ L + +FG Y+ Sbjct: 114 YKPRVDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ + ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +D Sbjct: 173 LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDED 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R D YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 233 RMSFPTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDS 292 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LRN GL R ++ +RLD+EL+VI +M + YFLIV DF Sbjct: 293 CEY----LRNLCYEGLYKRYKN-------PGKEVIERLDYELSVIKQMGYVDYFLIVWDF 341 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC Sbjct: 342 IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + Sbjct: 402 YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFEL 461 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A++ + + + V +L++IS+ LEGL RHASTHAAG+VI PL V Sbjct: 462 GMTID-KALSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ ++ D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D + Sbjct: 521 PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSMG 578 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD + Y L++ T G+FQLES GM+Q + ++P +EDIIA +SLYRPGP+D I Y Sbjct: 579 YDDLKVYELISKGETEGVFQLESPGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYL 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 +N E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL +D++RRAM KK Sbjct: 639 ANRNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKM 698 Query: 723 EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+++++ FI GA +NG+ + A +F+ + FA+Y FNKSHAAAYA Sbjct: 699 DVMEQERKNFIYGIVDEEGNVIVPGALRNGLDEVTANKLFDEMLDFANYAFNKSHAAAYA 758 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VI+YQTA++K +YPVEF+AA + +DN++KI + Q ++ I+++PP +N F V Sbjct: 759 VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTV 818 Query: 831 GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +++I + L+A+K VG I+ E + F S+ DF R+ +LN++ +ESL+ AG Sbjct: 819 VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946 A FG R QLL D + + + N N ++F G + LE+F + Sbjct: 879 AFSSFGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFP-K 937 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIR---GNNIRL 997 N + E E LG Y SGHPL+ Y + K + K EE + + + + Sbjct: 938 NRLLSMEKE--TLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVI 995 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A ++ +K+ K T+ + + +VT + E FP Sbjct: 996 AGVIATKKIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031 >gi|168204460|ref|ZP_02630465.1| DNA polymerase III, alpha subunit [Clostridium perfringens E str. JGS1987] gi|170664100|gb|EDT16783.1| DNA polymerase III, alpha subunit [Clostridium perfringens E str. JGS1987] Length = 1192 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1010 (37%), Positives = 592/1010 (58%), Gaps = 64/1010 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +HS YSLL+G+ + ++ + +IA+TD ++ ++ ++A A GI+PI Sbjct: 6 FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65 Query: 71 IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC++ + + +K ++ + +VLLV +GY+ L+++VS + ++ Sbjct: 66 LGCEVYVVPKSRKIKSNDEDNKTY----HLVLLVKNEKGYENLMKIVS-VASIEGFYYKP 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI +L+E +EG+I L+ G + +A + A + ++ F D Y+ LQ H Sbjct: 121 RIDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNH 179 Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + ++V +QLA +PLVATN+ ++++ED +AHD+LM + V +R R Sbjct: 180 GIEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRY 239 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----------I 296 D YLK+ EM +F +PEALENT++IA C+F + H LP+F + Sbjct: 240 PSDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGVEPFEYL 299 Query: 297 EKECDD--IQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 K C D I + EE L+ K + ++ G ++ +RL++EL VI +M + Sbjct: 300 RKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGE--NNEKVKEDIERLEYELGVIKQMGY 357 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIV DFI++A N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R+ Sbjct: 358 VDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPERV 417 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC + R VI YV KYGH+ V+QIITFG++ A+A +RDVGRA+ Y++VD Sbjct: 418 SMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEVD 477 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 R+ K IP + +A+ + + + V L+++S++LEGL RH+STHAAG+V Sbjct: 478 RIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSSTHAAGVV 536 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QR 592 I +PL + VP+ ++ S VTQF+M +E+ GL+K DFLGL+TLT+++ ++D + R Sbjct: 537 IASQPLVEYVPLQKNDES--IVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYNR 594 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 GV +DL + FDD E Y ++ T+G+FQLES+GM ++ ++PDC+EDIIA +SLYRP Sbjct: 595 GVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYRP 654 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+ I Y + K + + I P ++ +L T GV++YQEQVM+I + L+GYS+ +D+ Sbjct: 655 GPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSDL 714 Query: 713 LRRAMGKKIKEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYG 760 +RRAM KK + M+++++ FI G +NGIS A IF+ + FA Y Sbjct: 715 VRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASYA 774 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAAAYAVI +QTA++ +YPVEFLAA + M N +K+ ++ + A + IQ++PP Sbjct: 775 FNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPPD 834 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNR 879 +N F V + I + + AIK VG +I ++ +K F SL DFC+++D +N+ Sbjct: 835 INESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKIDLSIVNK 894 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R +ESL+ AG D R QLL + I K + ++F Sbjct: 895 RSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG----------A 944 Query: 940 LEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVYKPILRK 977 L++ S N +R+ N E+ + G Y SGHPLD Y+ L++ Sbjct: 945 LQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKE 994 >gi|87124235|ref|ZP_01080084.1| DNA polymerase III, alpha subunit [Synechococcus sp. RS9917] gi|86167807|gb|EAQ69065.1| DNA polymerase III, alpha subunit [Synechococcus sp. RS9917] Length = 1173 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1057 (37%), Positives = 606/1057 (57%), Gaps = 47/1057 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PA+A+TD ++ A+E + AAGI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPQMVERCKELGMPALALTDHGVMYGAIELLKLCKAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ + + +++ Q K +V+L A GY+ L++L S +L + + Sbjct: 62 IIGNEMYV-INGSIEDPQQKKE---RRYHLVVLAKNATGYRNLVKLTSLSHLRGMRGKGI 117 Query: 130 --RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R C+ L + +EGLI+ T G I +A VA ++++FGD Y+ + Sbjct: 118 FSRACIDKHLLKQYSEGLIIATACLGGEIPQAILRGRPDVARDVARWYQEVFGDDFYLEI 177 Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR ++V++A + L+ATN++ +L+ D EAHD L+ V ++S + R Sbjct: 178 QDHGSPEDRIVNVEIVRIAKELGIGLIATNDAHYLTRHDVEAHDALLCVLTGKLISDEKR 237 Query: 246 PRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 R T Y+++ EM +F+D + EA+ T +A + + +PRF E Sbjct: 238 LRYTGTEYIRSEEEMGRLFADHLAPEVVQEAITTTALVADKVEDYDILGRYQMPRFPIPE 297 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + LR + GL RL GA Y +RL +EL ++ +M F YFL+ Sbjct: 298 ----GHTPVSYLREVSECGLRERLELGA--DEVIDPTYGERLTYELGIMEQMGFPTYFLV 351 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D+I++A+ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D Sbjct: 352 VWDYIRFARDQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDID 411 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLI Sbjct: 412 TDFCIERRGEVIDYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLI 471 Query: 480 PNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 P P L+A+ + + FR+ DP V R ++++ ++EG + HAAG+VI Sbjct: 472 PVVRGKPAKLKAMIGEESPNPEFRDKYDKDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIA 531 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594 PL +LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + G Sbjct: 532 ADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVETSLGE 590 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++D +P D +T+ LL GIFQLES+GMRQ + ++P +EDI ++++LYRPGP Sbjct: 591 RIDPDKLPAKDPDTFALLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGP 650 Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 +D ++ + NRK+G+E I H + P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+ Sbjct: 651 LDAGLIPKFINRKHGREAIDFAHQSLQPILQETYGIMVYQEQIMKIAQDLAGYSLGEADL 710 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EM K + F+ GAS+ G+ +A +F+ + FA+Y FNKSH+ AY + Sbjct: 711 LRRAMGKKKVAEMQKHRSIFVKGASERGVDDKVADELFDQMVLFAEYCFNKSHSTAYGAV 770 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTA++K HYPV ++AA +T+ +K++++ + I++MPP VN DF Sbjct: 771 TYQTAYLKAHYPVAYMAALLTVNAGASDKVQRYIANCNAMGIEVMPPDVNASGTDFTPTG 830 Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +RI + L+A++ +G R ++ + AD PF SL D C R+ S LNRR LESL+ GA+ Sbjct: 831 DRILFGLSAVRNLGDGAIRQLIASREADGPFQSLADLCDRLPSSVLNRRSLESLIHCGAM 890 Query: 892 DCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKF 943 D +R QL+ LD + +A K+R + N+F A G+ ++L Sbjct: 891 DALAPEANRAQLIADLDLLLDWASSRAKDRDSGQGNLFDLMASAADSAGSGPADLSLAPK 950 Query: 944 SVE----NSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIRGNNIR 996 + + S + E+ ++GFY S HPL KP +L +G+ +E + + I Sbjct: 951 AAPVPDYHPSEKLRLEKELVGFYLSDHPLKQLKPPARLLAPIGLASLQEQADKAKVSAI- 1009 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 AMV +Q TRKG R+ + + EA FP Sbjct: 1010 --AMVSELRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044 >gi|237745381|ref|ZP_04575862.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] gi|229432610|gb|EEO42822.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] Length = 1133 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/988 (38%), Positives = 593/988 (60%), Gaps = 61/988 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSL EG S++N L + ++A+TD N+F A+EF QKA GI+P Sbjct: 4 NFVHLNLHTEYSLSEGVNSIDNFLVRAKELGMNSLAVTDYANMFCAVEFYQKAKKMGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L I +D + S+ LL GY+ L++L S +Y ++ ++ + Sbjct: 64 IIGLELPIFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNENRE-L 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNLQ 187 ++ L+E ++ LI L+ +G I +A NSS ++ + ++F + Y+ +Q Sbjct: 112 KLNKEILKEY-SQDLIALSSSINGEIGKAILTNSSDEKINSIINEYIEIFSKENFYLEIQ 170 Query: 188 RHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + E++++ LA + L LVATNN ++ + YE DV++ + V + Sbjct: 171 A----NELSETKIINDKFYDLAKLNGLELVATNNVYYVDRDGYELQDVIICIQSGLKVKE 226 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K+R R ++ + YLK++ EM + +A+EN IA C+ + P + Sbjct: 227 KNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANHIADLCNIEITFGNLQFPYY----- 281 Query: 301 DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354 ++ E +G++ L I K Y +D RL++EL+VI +M +S Sbjct: 282 -EVPSE---------YSGMDEYLKTICHTNIKKLYKENLTKDILDRLEYELSVIIKMGYS 331 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYF++V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S Sbjct: 332 GYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 391 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+ Sbjct: 392 MPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDK 451 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 L KLI P + + + ++ + D + ++++++ ++E RH STHAAGI+I Sbjct: 452 LAKLIS--PFQTLE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILI 508 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593 L + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + Sbjct: 509 TKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKN 568 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + VDL IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPG Sbjct: 569 IDVDLYKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPG 628 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+ + +V + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD Sbjct: 629 PLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEAD 688 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ AYA+ Sbjct: 689 LLRRAMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAM 748 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISY TA+ K HYP + AA MT E+ I + DA++ I++ P++N+P F+V Sbjct: 749 ISYWTAYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSAYFEVK 808 Query: 832 DNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 ++ I YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GA Sbjct: 809 NDGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGA 868 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVEN 947 LD +R + S+D + Y+ K + N+F T DK L E F+++ Sbjct: 869 LDEIKGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDE 927 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPIL 975 + E+ LGFY S HPLD YK I+ Sbjct: 928 ---KLNKEKEFLGFYLSSHPLDRYKDII 952 >gi|116070442|ref|ZP_01467711.1| DNA polymerase III subunit alpha [Synechococcus sp. BL107] gi|116065847|gb|EAU71604.1| DNA polymerase III subunit alpha [Synechococcus sp. BL107] Length = 1172 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1058 (37%), Positives = 606/1058 (57%), Gaps = 51/1058 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L +++++ PAIA+TD ++ A+E + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P +V+L A GY+ L++L S +L Sbjct: 62 IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNAIGYRNLVKLTSISHLRGMRG 114 Query: 127 QSV--RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + R C+ L + +EGLI+ T G I +A +VA ++ +FGD Y Sbjct: 115 RGIFSRACVDKDLLQRYSEGLIIATACLGGEIPQAILRGRPEVARDVARWYQNVFGDDFY 174 Query: 184 VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR S++V++A + LVATN++ +L+++D EAHD L+ V ++S Sbjct: 175 LEIQDHGSPEDRIVNSEIVKIAEELNIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R T Y+K EM +F+D + +A+ NT ++A + + +PRF Sbjct: 235 EKRLRYTGTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFP 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + LR + GL RL A A++Y R+ EL ++ +M F Y Sbjct: 295 IPD----GHTAVTYLREVTLQGLRDRLELKA--DDPIAENYADRMSHELEIMEQMGFPTY 348 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+V D+I++A++ +IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMP Sbjct: 349 FLVVWDYIRFAREQSIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMP 408 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL Sbjct: 409 DIDTDFCIERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468 Query: 477 KLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 KLIP P L+A I D+S FRE L DP+V ++++ ++EG + HAAG+ Sbjct: 469 KLIPVVRGKPAKLKAMIGDESPNPEFREKYLGDPAVKHWVDMAMRIEGTNKTFGVHAAGV 528 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQ 591 VI PL QLVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + Sbjct: 529 VIAADPLDQLVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVS 587 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G ++D +P D +T+ LL GIFQLESSGMRQ + ++P +EDI ++++LYR Sbjct: 588 SGTRIDPDKLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYR 647 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+D ++ + NRK+G+E I H +++P+L ET G+++YQEQ+M+IAQ L+GYSL + Sbjct: 648 PGPLDAGLIPKFINRKHGREAIDFAHEILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQ 707 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EM K + F+ GA + G+ ++ +F+ + FA+Y FNKSH+ AY Sbjct: 708 ADLLRRAMGKKKVSEMQKHRGIFVEGAKERGVDVKVSDELFDQMVLFAEYCFNKSHSTAY 767 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 ++YQTA++K HYPV ++AA +T+ +K++++ + I++MPP +N +DF Sbjct: 768 GAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDFT 827 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +RI + L+A++ +G R ++E+ D PF SL D C R+ S LNRR LESL+ Sbjct: 828 PNGDRILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLIHC 887 Query: 889 GALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL 940 GA+D +R QL+ LD + +A K+R + N+F A + G + Sbjct: 888 GAMDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSMAP 947 Query: 941 EKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIRGNNI 995 + V + S + E+ ++GFY S HPL P +L +G+ EE + + I Sbjct: 948 KAAPVPDYPPSEKLRLEKDLVGFYLSDHPLKQLTPSSRLLAPIGLGSLEEQPDKAKVSAI 1007 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ +Q TRKG R+ + + EA FP Sbjct: 1008 ---TMITELRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042 >gi|116074620|ref|ZP_01471881.1| DNA polymerase III subunit alpha [Synechococcus sp. RS9916] gi|116067842|gb|EAU73595.1| DNA polymerase III subunit alpha [Synechococcus sp. RS9916] Length = 1177 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/1062 (37%), Positives = 607/1062 (57%), Gaps = 57/1062 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PA+A+TD ++ A+E + GI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPQMVERAKELGMPALALTDHGVMYGAVELLKLCQGTGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ + + ++ Q K +V+L A GY+ L++L S +L + + Sbjct: 62 IIGNEMYV-VNGSIDDPQQKKE---RRYHLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117 Query: 130 --RICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R C+ LQ+ +EGLI+ T G I +A +VA ++++FGD Y+ Sbjct: 118 FSRACIDKHLLQQY-SEGLIVATACLGGEIPQAIMRGRPEVARDVARWYQEVFGDDFYLE 176 Query: 186 LQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++A + L+ATN++ +L+ D EAHD L+ V ++S + Sbjct: 177 IQDHGSVEDRIVNVEIVKIAKELGIGLIATNDAHYLTRNDVEAHDALLCVLTGKLISDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI-- 296 R R T ++++ EM +F D + EA+ T E+A + + +PRF Sbjct: 237 RLRYTGTEFIRSEEEMGRLFVDHLDPAVVQEAIATTAEVAEKVEDYDILGRYQMPRFPIP 296 Query: 297 --EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 +++ E LR++ + LA+GA +A+ RL +EL V+ +M F Sbjct: 297 DGHTPVSYLKEVTEQGLRDR------LSLAEGASIDAVYAE----RLVYELGVMEQMGFP 346 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFL+V D+I++A++ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R S Sbjct: 347 TYFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKS 406 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DR Sbjct: 407 MPDIDTDFCIERRSEVIDYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADR 466 Query: 475 LCKLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 L KLIP P L A+ + + FRE DP V R ++++ ++EG + HAA Sbjct: 467 LAKLIPVARGKPAKLAAMIGEESPNPDFREKYQNDPVVKRWVDMAMRIEGTNKTFGVHAA 526 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL- 589 G+VI PL +LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + Sbjct: 527 GVVIAADPLDELVPLQRNNDGQV-ITQYYMEDVESMGLLKMDFLGLKNLTMIDKTLELVE 585 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 A G +D +P D +T+ LL GIFQLESSGMRQ + ++P +EDI ++++L Sbjct: 586 ANFGESIDPDKLPPQDPDTFALLARGDLEGIFQLESSGMRQIVRDLRPSSLEDISSILAL 645 Query: 650 YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 YRPGP+D ++ + NRK+G+E I H ++P+L+ET G+++YQEQ+M+IAQ L+GYSL Sbjct: 646 YRPGPLDAGLIPKFINRKHGREAIDFAHQALEPILQETYGIMVYQEQIMKIAQDLAGYSL 705 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 EAD+LRRAMGKK EM K + F+ GAS+ G+ + IA +F+ + FA+Y FNKSH+ Sbjct: 706 GEADLLRRAMGKKKVSEMQKHRGIFVKGASERGVDEKIADELFDQMVLFAEYCFNKSHST 765 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY ++YQTA++K HYPV ++AA +T+ +K++++ + I++MPP VN +D Sbjct: 766 AYGAVTYQTAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGID 825 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F +RI + L+A++ +G RH++ + D PF+SL D C R+ S LNRR LESL+ Sbjct: 826 FTPTGDRILFGLSAVRNLGDGAIRHLIASRQEDGPFESLADVCDRLPSSVLNRRSLESLI 885 Query: 887 FAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----------AHEKGTF 934 GALD +R QL+ LD + +A K+R + N+F Sbjct: 886 HCGALDALEPKANRAQLMADLDLLLDWASSRAKDRESGQGNLFDLMAAATAAEGEGANDL 945 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIR 991 S + + + E+ ++GFY S HPL P +L +G+ EE + Sbjct: 946 SMAPKAPPVPDYHPTEKLRLEKDLVGFYLSDHPLKQLTPPAKLLAPIGLGSLEEQADKAK 1005 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + I AMV +Q TRKG R+ +T + EA FP Sbjct: 1006 VSAI---AMVSEYRQVTTRKGDRMAVLTLEDLTGSCEAVVFP 1044 >gi|83814834|ref|YP_445111.1| DNA polymerase III, alpha subunit [Salinibacter ruber DSM 13855] gi|294506988|ref|YP_003571046.1| DNA polymerase III, alpha subunit [Salinibacter ruber M8] gi|83756228|gb|ABC44341.1| DNA polymerase III, alpha subunit [Salinibacter ruber DSM 13855] gi|294343316|emb|CBH24094.1| DNA polymerase III, alpha subunit [Salinibacter ruber M8] Length = 1166 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/984 (38%), Positives = 588/984 (59%), Gaps = 39/984 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+F HL H+ YSLL+GA ++++++ PA+AITD NL+ EF A + +Q Sbjct: 2 PNFSHLHCHTQYSLLDGAAGIDHLIESAERRDIPAVAITDHGNLYGVPEFYTTAQKSDVQ 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+ L + PT VLL GY+ L++L S +L + Sbjct: 62 PIIGCEF------YLTPSGIQDQSDPTRYHQVLLAKNQTGYENLMQLSSTSFL-EGFYYK 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L L++ EGL+ T G + + + A+++ + +FGD Y+ +Q Sbjct: 115 PRIDLDLLRK-HHEGLVATTCCLQGQVPQMILNQGEEAAQEKFEEYLDIFGDDYYIEIQD 173 Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D++ ++V+ Q A +++ ++ATN+ ++ ++D+EA D+L+ + + DR R Sbjct: 174 HDIDDQHTVNEVLLQWARAYDVEVLATNDVHYVDQQDHEAQDILLCLQTGDDYNDPDRMR 233 Query: 248 VTPDH-YLKNRSEMVSIFSDLPE-----ALENTVEIARRCSFILQVHAPILPRF-IEKEC 300 + D YLK+ + M+ + +PE AL NT ++A +CSF L + ++P + I + Sbjct: 234 FSNDQFYLKDSAGMMEALTGIPEEFQREALVNTNKVADKCSFDLPMGDLLMPHYPIPEGF 293 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 +D+ + LR+ + R Q RL+ EL +IA +SGYFLIV Sbjct: 294 EDM----DGYLRHLTFERAKERYGDPL------PQTVVDRLNHELGIIADEGYSGYFLIV 343 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DF A++ ++ VGPGRGS AGS +Y L IT++DPL + LLFERFLNP+R+SMPD DI Sbjct: 344 QDFTDAARELDVRVGPGRGSAAGSCVSYCLGITNVDPLEYDLLFERFLNPERVSMPDIDI 403 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF R++VI YV KYG E V QI+TFG++ AK A+RDV R L +P + D + K+IP Sbjct: 404 DFDDRGREKVIDYVVEKYGQENVCQIVTFGTMGAKTAVRDVSRVLDIPLDRADEIAKMIP 463 Query: 481 NDPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + P + QA ++ FR + A +P V ++++ ++ LEG RH HAAG++I + Sbjct: 464 DGPGVDLE-QAFDENPDFRALKDANNPEVSKMMQYAEVLEGSVRHTGVHAAGVIIAPGEI 522 Query: 540 SQLVP--MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596 S VP + + ++ TQ++ W+E+ GL+K DFLGLKTLTL++ +++ + R V + Sbjct: 523 SDYVPVSVAKSKGEEVVTTQYDGDWVEEFGLLKMDFLGLKTLTLIEDAVELVEDTRDVDL 582 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 ++ IP DD T+ L T+ IFQ ES+GMR+ L ++P I D+IA+ +LYRPGP++ Sbjct: 583 NIDDIPLDDEATFELFQRGDTVSIFQFESTGMREHLRKLKPTEIGDLIAMNALYRPGPME 642 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI Y RK+G+E++ HPL++ +L+ T G+ ++QEQVMQ+A+ L+G+SL EAD+LRRA Sbjct: 643 NIPTYVARKHGQEEVEYPHPLLEDILEPTYGIAVFQEQVMQMARELAGFSLGEADILRRA 702 Query: 717 MGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 MGKK ++ M KQ+E+FI G ++N I + A +F+++ +FA YGFNKSH+AAY++++Y+ Sbjct: 703 MGKKKEKLMRKQREKFIKGCQAENDIPEDEADELFDIINEFAGYGFNKSHSAAYSLVAYR 762 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----- 830 TA++K HYP EF+AA+MT EMDN +K+ K ++AR ++++PPS+N F V Sbjct: 763 TAYLKAHYPPEFMAAAMTNEMDNTDKLSKVLEEARSMGLEVLPPSINRSQSRFTVEQGPD 822 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 G R+ + LAAIK G +++A + PFDS+ D VD +N+R LE+L AG Sbjct: 823 GAYRVRFGLAAIKNAGEKAINALIDAREEHGPFDSIFDLTKNVDLGTVNKRTLEALAQAG 882 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENS 948 ALD R QL++ +D +Y Q V+ +R ++F + + GT + + L Sbjct: 883 ALDDLEGHRAQLMEIMDKAVRYGQKVQHDRMAGQNSLFGNGDAGTEAMQPGLPDVETWAK 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYK 972 S R + E VLGFY SGHPLD Y+ Sbjct: 943 SQRLKEEHEVLGFYVSGHPLDEYR 966 >gi|229072106|ref|ZP_04205315.1| DNA polymerase III subunit alpha [Bacillus cereus F65185] gi|228711040|gb|EEL63006.1| DNA polymerase III subunit alpha [Bacillus cereus F65185] Length = 1108 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/1033 (37%), Positives = 612/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL R + K H + RLD ELNVI+RM FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 + +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|229112070|ref|ZP_04241613.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-15] gi|228671393|gb|EEL26694.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-15] Length = 1108 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1033 (36%), Positives = 612/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL R + K H + RLD ELNVI+RM FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E +K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 + +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|125973779|ref|YP_001037689.1| DNA polymerase III DnaE [Clostridium thermocellum ATCC 27405] gi|281417936|ref|ZP_06248956.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20] gi|125714004|gb|ABN52496.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium thermocellum ATCC 27405] gi|281409338|gb|EFB39596.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20] Length = 1181 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1076 (36%), Positives = 623/1076 (57%), Gaps = 78/1076 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA + +++ + +IAITD ++ ++F ++A GI+PI Sbjct: 5 FVHLHVHTEYSLLDGANRIKDLIRRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC+ I + QG + + P +VLL GY+ L+++VS + + Sbjct: 65 LGCE--IYTAKGSRFDKQGG--WDSDPGHMVLLAKNNTGYKNLMKIVS-IGFTEGFYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ + L++ +EGLI ++ SG I +A N+ + A++ L +FG D Y+ LQ Sbjct: 120 RVDMEVLEKY-SEGLIAMSACLSGDIPKAILNNNYEKAKELALKLNSIFGQDNFYLELQM 178 Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + G + Q+++L+ +PLVATN++ +L ED AH++L+ + ++ +DR Sbjct: 179 N-GIEEQNIVNQQLIKLSRETGIPLVATNDAHYLRREDARAHEILLCIQTGKSINDEDRM 237 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + D Y+K+ EM+S+F ++PEA+ NTV IA C+ L+ + LP+F + D K Sbjct: 238 RFSSDDFYIKSPEEMISLFRNIPEAISNTVRIADMCNVELEFNKLHLPKF---DVPD-GK 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR G E R+ K ++ RL++EL+VI +M + YFLIV+DFI+ Sbjct: 294 DPFEYLRALCYEGFE-RI----YGKDNRDEEKINRLEYELSVIKQMGYVDYFLIVSDFIR 348 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK+ I VGPGRGS AGS AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDFC + Sbjct: 349 YAKEKGIMVGPGRGSAAGSFVAYCLGITNIDPLKYNLLFERFLNPERISMPDIDIDFCFE 408 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG +RVAQIITFG++ A+A +RDVGRAL +PY +VD + K+IP Sbjct: 409 RRQEVIDYVVEKYGKDRVAQIITFGTMAARAVIRDVGRALDIPYGEVDAIAKMIPFQIGM 468 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + R+ D V L++ ++ LEG+ RHASTHAAG+VI PL++ VP+ Sbjct: 469 SIE-KAMELNPELRQRYNDDERVKELIDTAKLLEGMPRHASTHAAGVVISREPLTEYVPL 527 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 R D TQF M +E+ GL+K DFLGL+TLT+++ ++ + + + V + + D Sbjct: 528 QRS--EDSITTQFPMGILEELGLLKMDFLGLRTLTVIRDAVALIKKNHNIDVKIDELQMD 585 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + L+ T G+FQLES+GM Q ++ +QP +EDIIA +SLYRPGP+D I Y Sbjct: 586 DPNVFKLIGEGRTAGVFQLESAGMTQFMKELQPASLEDIIAGISLYRPGPMDQIPRYLRN 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN E + HPL++ +L T G ++YQEQVMQI + L+GYS+ +D++RRAM KK Sbjct: 646 KNNPELVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMAKKKVSV 705 Query: 725 MDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 M+++++ FI GA +NG+ + A IF+ + FA Y FNKSHAAAYAVI Sbjct: 706 MEQERKNFIYGIDDDNGNIIVKGAVRNGVDEETANKIFDEMMDFASYAFNKSHAAAYAVI 765 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTAW+K +YPVEF+AA + M + +KI ++ + R+ I+++PP +N V F V + Sbjct: 766 AYQTAWLKCYYPVEFIAALLNSFMGSSDKISQYVHECRKLGIEVLPPDINESDVRFTVVN 825 Query: 833 NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +I + LAA+K VG R I+ E + + + S +F RVD K +N+R +ESL+ +GA Sbjct: 826 GKIRFGLAAVKNVGENAVRSIIDERNINGNYKSFRNFLERVDGKDVNKRCIESLIKSGAF 885 Query: 892 DCFGYSRMQLLQSLDNIQK------------------YAQWVEKNRTNKHENIFAHEKGT 933 D G R +L+ + + + + A E + ++ ++ ++ Sbjct: 886 DSMGVYRSRLMNAYEKMMEGISSQRKKSMEGQLSIFDMALNTEDGKKDEKHQLYPEDEDI 945 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK-------PILRKMGIKGYEES 986 + D + ++S + E+ +LG Y SGHPL ++ + K + +E+ Sbjct: 946 YPD---IPEYS---QKILLSMEKEMLGLYISGHPLSEFEKEFSEVVTLYSKDMVSDADEN 999 Query: 987 --VATIRGN-------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V T+ GN + + ++ S++ K T+ + + +VT + E FP Sbjct: 1000 GEVITVEGNKGLKDGMTVTVGGIITSRKTKTTKNNNLMAFVTLEDLYGTMEIIVFP 1055 >gi|182624555|ref|ZP_02952338.1| DNA polymerase III, alpha subunit [Clostridium perfringens D str. JGS1721] gi|177910363|gb|EDT72744.1| DNA polymerase III, alpha subunit [Clostridium perfringens D str. JGS1721] Length = 1192 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1010 (37%), Positives = 593/1010 (58%), Gaps = 64/1010 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +HS YSLL+G+ + ++ + +IA+TD ++ ++ ++A A GI+PI Sbjct: 6 FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65 Query: 71 IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC++ + + +K ++ + +VLLV +GY+ L+++VS + ++ Sbjct: 66 LGCEVYVVPKSRKIKSNDEDNKTY----HLVLLVKNEKGYENLMKIVS-VASIEGFYYKP 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI +L+E +EG+I L+ G + +A + A + ++ F D Y+ LQ H Sbjct: 121 RIDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNH 179 Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + ++V +QLA +PLVATN+ ++++ED +AHD+LM + V +R R Sbjct: 180 GIEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRY 239 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-----------I 296 D YLK+ EM +F +PEALENT++IA C+F + H LP+F + Sbjct: 240 PSDQFYLKSPEEMWDMFDYVPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGVEPFEYL 299 Query: 297 EKECDD--IQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 K C D I + EE L+ K + ++ G ++ +RL++EL VI +M + Sbjct: 300 RKTCFDGLIDRLEELRPLKEKGIYDIDKVYEIGE--NNDKVKEDIERLEYELGVIKQMGY 357 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIV DFI++A N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R+ Sbjct: 358 VDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPERV 417 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC + R VI YV KYGH+ V+QIITFG++ A+A +RDVGRA+ Y++VD Sbjct: 418 SMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEVD 477 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 R+ K IP + +A+ + + + V L+++S++LEGL RH+STHAAG+V Sbjct: 478 RIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSSTHAAGVV 536 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QR 592 I +PL + VP+ ++ S VTQF+M +E+ GL+K DFLGL+TLT+++ ++D + R Sbjct: 537 IASQPLVEYVPLQKNDES--IVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYNR 594 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 GV++DL + FDD E Y ++ T+G+FQLES+GM ++ ++PDC+EDIIA +SLYRP Sbjct: 595 GVEIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYRP 654 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+ I Y + K + + I P ++ +L T GV++YQEQVM+I + L+GYS+ +D+ Sbjct: 655 GPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSDL 714 Query: 713 LRRAMGKKIKEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYG 760 +RRAM KK + M+++++ FI G +NGIS A IF+ + FA Y Sbjct: 715 VRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASYA 774 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAAAYAVI +QTA++ +YPVEFLAA + M N +K+ ++ + A + IQ++PP Sbjct: 775 FNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPPD 834 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNR 879 +N F V + I + + AIK VG +I ++ +K F SL DFC+++D +N+ Sbjct: 835 INESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKIDLSIVNK 894 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R +ESL+ AG D R QLL + I K + ++F Sbjct: 895 RSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG----------A 944 Query: 940 LEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVYKPILRK 977 L++ S N +R+ N E+ + G Y SGHPLD Y+ L++ Sbjct: 945 LQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKE 994 >gi|187776689|ref|ZP_02993162.1| hypothetical protein CLOSPO_00204 [Clostridium sporogenes ATCC 15579] gi|187775348|gb|EDU39150.1| hypothetical protein CLOSPO_00204 [Clostridium sporogenes ATCC 15579] Length = 1185 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1070 (36%), Positives = 625/1070 (58%), Gaps = 53/1070 (4%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++A Sbjct: 8 EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC++ + + ++ + Q K +VLLV GY+ L+E+VS+ + + Sbjct: 68 GIKPIIGCEIYVAAK-SMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV-EGF 123 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L+E +EGLI L+ G + + + ++K L +K +F + Y+ Sbjct: 124 YYKPRVDHEFLKE-HSEGLIALSACLGGEVQSNILKGNLEKSKKAALIYKDIFKEGFYLE 182 Query: 186 LQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ + ++ +VQ++ ++PLVATN+ ++ +EDY++HD+L+ + V +++ Sbjct: 183 LQYHGMEEQLKVNETLVQMSKELDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDD 302 R R D YLK+ EM FS +PEALENTV+I+ +C+F H LP+F +E+ D Sbjct: 243 RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEQCNFDYNFHESKLPKFPLEEGIDP 302 Query: 303 IQKEEE-------------NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + E + NK + E+ LA GA K A D +RL++EL++I Sbjct: 303 YEYLREICFKGLFSRYEILKDFMNKPFSMDEI-LAYGAENK--EAFDLIERLNYELSIIK 359 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+FERFLN Sbjct: 360 QMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLN 419 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+A +RDVGRA+ PY Sbjct: 420 PDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYPY 479 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 ++VDR+ K+IP ++ +A+ + +EA + V L+++++ LEGL RH STHA Sbjct: 480 AEVDRIAKMIPTVLNITIN-KALELNPELKEAYDNEERVKELIDVARALEGLPRHTSTHA 538 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI +PL VP+ ++ S VTQF M +E+ GL+K DFLGL+TLT+++ ++ + Sbjct: 539 AGVVIASQPLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRII 596 Query: 590 AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + +G+ +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +EDIIA +S Sbjct: 597 KENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGIS 656 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L+GYS+ Sbjct: 657 LYRPGPMAEIPRYIANKNNPLNIEYATEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSMG 716 Query: 709 EADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYG 760 +D++RRAM KK + M+ +++ FI G NGI + +A N+F+ + FA Y Sbjct: 717 RSDLVRRAMSKKKHDVMELERKNFIYGNKEEGVKGCINNGIDEKVANNLFDSMMDFASYA 776 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A I+I+ P+ Sbjct: 777 FNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDSDKVSFYVNFAETLGIEIVAPN 836 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879 +N +F V DNRI + L A+K VG +I+ + K F L DF ++VD+ +N+ Sbjct: 837 INESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKGKFIDLSDFFNKVDTSIINK 896 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R++ESL+ AGA DC R ++L + I Q ++N N+F + Sbjct: 897 RLVESLIKAGAFDCLNVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSMD 956 Query: 940 LEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------KMGIKG-YE 984 ++ +++ ++ + E+ + G YFSGHPL+ Y+ L+ K ++G Sbjct: 957 IKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKVQISHHISDIISKESLEGNMV 1016 Query: 985 ESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +++ +I+ G+ + + M+ +K TR + ++ + E FP Sbjct: 1017 DAINSIKDGDKVIVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|284047929|ref|YP_003398268.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM 20731] gi|283952150|gb|ADB46953.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM 20731] Length = 1138 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1040 (37%), Positives = 598/1040 (57%), Gaps = 39/1040 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+G+ + ++ PA+AITD ++ +EF Q+ AGI+PI Sbjct: 4 FVHLHTHTQYSLLDGSCRIPELVQYAKELGMPALAITDHGVMYGVIEFYQECEKAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ I +L + + ++ + ++LL GYQ L++LVS + ++ R Sbjct: 64 IGCEVYITSGSHLDKSLETRS---KLYHLILLAENRTGYQNLMKLVS-IGEVEGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I L+ +EGLI L+ +G + R + AEK +L + +FG D Y+ +Q H Sbjct: 120 IDKDVLRRY-SEGLICLSACIAGEVPRHILRGELETAEKTMLEYLDIFGRDHYYLEIQNH 178 Query: 190 RGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + Q ++ LA H + LVATN+ ++ +ED D+L+ + +T R R Sbjct: 179 GLPEEATVRQELRRLAQKHGIKLVATNDLHYIRKEDASGQDILLCIQTNTRYLDPQRMRF 238 Query: 249 TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D +YLK+R EM +F + EAL+NT+EIA RC+ ++ E + E Sbjct: 239 NNDSYYLKSREEMEELFPEDQEALDNTLEIAERCN-------------VQLEFGHLLLPE 285 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + + G +L + Y D R+R+++EL +I +M +SGYFLIV DFI Sbjct: 286 FPLPPGETMDGYLRKLCEEGFPSRYPEDDGTARKRMEYELGIIRQMGYSGYFLIVWDFIN 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 ++++++IPVGPGRGS AGS+ AY IT IDPL+++L+FERFLNP+R+SMPD D D C Sbjct: 346 YSRRHDIPVGPGRGSAAGSIVAYLTGITSIDPLKYNLIFERFLNPERVSMPDIDTDICYV 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 +R V+ Y+ KYG VAQIITFG+L AKAA++DVGRA+ +P + V+++ KLIPN P Sbjct: 406 KRHLVVDYLARKYGESHVAQIITFGTLAAKAAVKDVGRAMDIPLNVVNQVNKLIPNTPG- 464 Query: 486 PVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +L+ + SR RE R DPS+ +LL+ +QK+EG+ RH STHAAG+VI L+ VP Sbjct: 465 -TTLKGALEGSRELRELRDGDPSIAQLLDFAQKVEGMPRHTSTHAAGVVITPGELTDYVP 523 Query: 545 MYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 + SD TQ++ E GL+K D LGL+TLT++ +L + + +G +VD+ Sbjct: 524 LQITSSSDDEHEYICTQYDKDRSESLGLLKMDLLGLRTLTVIDDALKMIKKNQGTEVDIR 583 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I D +T +L T +FQ+ES GM + ++ + P+ ED+I LV+LYRPGP+ + + Sbjct: 584 TIDLHDPKTCRMLCKGDTAAVFQMESDGMTRLMKQLAPEGFEDLIPLVALYRPGPLGSGM 643 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 + ++G+ +HPL++P++ +T GVI+YQEQVMQI L G++L EAD+LRRAM Sbjct: 644 AEDFIAGRHGRRTAQVLHPLMEPIVADTYGVILYQEQVMQIVSALGGFTLGEADILRRAM 703 Query: 718 GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 GKK + +D KE+F+ GA K +GIS+ + IF LL FA YGFNKSH+AAYA+++Y T Sbjct: 704 GKKKAKLLDSMKEKFLDGAQKLHGISRELGSEIFALLQHFAGYGFNKSHSAAYALVAYHT 763 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 AW+K +YPVE++AA + + +K+ + R IQ++PP +NT F V + I Sbjct: 764 AWLKANYPVEYMAAFLNSIITVADKVSWYIGVCRDMGIQVLPPDINTSEAGFSVDGHTIR 823 Query: 837 YSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L AIK VG I+E + PF DF RVD K+N+RV+E+L+ G+++ FG Sbjct: 824 FGLGAIKSVGDAAVTVILEERKKRGPFRDFFDFTRRVDLSKVNKRVVEALIKCGSMNGFG 883 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R QLL +D + A +++R +F E ++ I + + E Sbjct: 884 LRRSQLLAIMDPALEAAASEQRDRITGQLGLFGEEDIASANTIPIPNLPEIPKAEILRLE 943 Query: 956 QRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 + ++GFY +GHPLD Y+ LR++ I+ EE+ G I + ++ + + T+ G Sbjct: 944 RELIGFYVTGHPLDAYRNALRRLTPLIRCTEENYKD--GERIAVGGIITDLRLRSTKNGD 1001 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 R+ + FP Sbjct: 1002 RMASFVLEDLTGSLTVIAFP 1021 >gi|282849948|ref|ZP_06259331.1| putative DNA polymerase III subunit alpha [Veillonella parvula ATCC 17745] gi|282580385|gb|EFB85785.1| putative DNA polymerase III subunit alpha [Veillonella parvula ATCC 17745] Length = 1135 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/1015 (36%), Positives = 614/1015 (60%), Gaps = 39/1015 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + QPA+AITD N+++A+ F ++ A G++PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGKQ 127 IGC++ + +N + + ++LL T EGY+ L+++VS+ +L + + Sbjct: 64 IGCEVYV--TENSRFDRPEGRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLYRPRA 121 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 + + ++G+I L+ G I + ++ + A++ + + + +G D ++ + Sbjct: 122 DRDLLRQY-----SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEI 176 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H + + + ++++L+ + L +VA+N+ ++ +ED +A D+ + ++ ++ DR Sbjct: 177 QNHGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDR 236 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + D YLK+ EM +F +P A+ENT++IA RC+ LP F D+ Sbjct: 237 LKFPNDEFYLKSGDEMAELFGHIPGAIENTLKIADRCNVEFNFDEHHLPHF------DVP 290 Query: 305 KEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E ++ + V E+ RL G +++ ++RLD+EL+VI M F YFLIV D+ Sbjct: 291 EGETSKTYLRKVCEREIPRLY------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDY 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 +++A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC Sbjct: 345 VRYAREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++R + I YV KYG RV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ Sbjct: 405 YEKRGQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNEL 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++L ++ +D +V L + +KLEG+ R++STHAAG+VI PL V Sbjct: 465 G--ITLDKALQGKDLKDLYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602 P+ ++ + VTQ++ IE+ GL+K DFLGL+TLT++ +L + A RG+ +DL IP Sbjct: 523 PV-QNANDEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIP 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 DD +LT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + +V Sbjct: 582 LDDKAACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVAD 641 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + +R++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK Sbjct: 642 FIDRRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKK 701 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + + Q+E FI G+ NGI +++A +F+LL FA YGFNKSH+AAYA I+YQTA++K Sbjct: 702 KESVLKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLK 761 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HY EF+AA+MT M N++K+ + ++ N++++ P +N F V D+ I + L Sbjct: 762 AHYFPEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQDDAIRFGLG 821 Query: 841 AIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK VG R I E + + + DFC RVD+K +N+R+LESL+ GA+D F +R Sbjct: 822 GIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRN 881 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957 QLL ++ Q +K+ N+F E F +E S ++ + ++E+ Sbjct: 882 QLLHMYESAQAVGAKEQKDAAMGTMNLFGDMEEAVDFIPVPNVEDLSEDD---KLKDEKE 938 Query: 958 VLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 GFY +GHPL Y L + + E+ G I ++ +K + T++ Sbjct: 939 YTGFYITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKR 993 >gi|148926683|ref|ZP_01810364.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni CG8486] gi|145845202|gb|EDK22297.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni CG8486] Length = 1200 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1001 (39%), Positives = 590/1001 (58%), Gaps = 55/1001 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 237 LNDPDRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + I EE E GLE RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ E+F V + E E+ +LG Y SGHPLD + Sbjct: 952 GVQVNFTPKNEEFEVME---KLEYEKEILGIYVSGHPLDRF 989 >gi|323142354|ref|ZP_08077186.1| DNA polymerase III, alpha subunit [Phascolarctobacterium sp. YIT 12067] gi|322413238|gb|EFY04125.1| DNA polymerase III, alpha subunit [Phascolarctobacterium sp. YIT 12067] Length = 1135 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/1036 (36%), Positives = 616/1036 (59%), Gaps = 38/1036 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+GA ++ ++ ++AITD ++ A+EF Q+ AGI+PI Sbjct: 5 FTHLHVHTEYSLLDGASKIHELVAYAKELGMDSLAITDHGAMYGAVEFYQECTKAGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + +L+ N+G + ++LL GY L+++VS + L+ R Sbjct: 65 IGCEVYLSKGSHLEKNNRG------MYHLILLAENDTGYHNLMKIVS-IGQLEGFYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L+ EG+I L+ +G + + ++ + A + + + +FG + ++ +Q H Sbjct: 118 VDKDVLRTY-HEGVICLSACVAGEVPQMILQDNLEGARRCIQEYIDIFGKENYFLEIQDH 176 Query: 190 RGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + ++ S ++ QLA L LVATN+ ++ ++D A D+L+ + ++ V + DR R Sbjct: 177 DLDEEHKVSAELKQLAQEFGLGLVATNDLHYVQQKDAAAQDILLCIQTTSTVDEPDRMRF 236 Query: 249 TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D +YLK+ EM ++F D PEAL NT +IA RC+ ++ +LP F E D Sbjct: 237 NNDSYYLKSYDEMEALFGDCPEALSNTNKIADRCNVKMEFGHLLLPEFPVPEGFD----- 291 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQ 365 AV+ L L + A+ K Y D R+RLDFEL++I M ++ YFLIV DFI Sbjct: 292 -------AVSYLR-HLCEEALPKRYEVVDEKVRKRLDFELDIINTMGYACYFLIVWDFIN 343 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 + + ++IPVGPGRGS AGS+ AY L IT+I+PLR+ LLFERFLNP+R+SMPD D DFC Sbjct: 344 YCRSHDIPVGPGRGSAAGSIVAYLLRITNIEPLRYHLLFERFLNPERVSMPDIDTDFCYV 403 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 +R++V+ YV +YG ERVAQIITFG+LQA+AA+RDVG+AL M Y +VD + KLIP + Sbjct: 404 KRNQVLDYVVRRYGQERVAQIITFGTLQARAAVRDVGKALGMSYGEVDEIAKLIPRELG- 462 Query: 486 PVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 ++L+ + S+ FR+A + P V +L++++Q +EGL R+A THAAG++I + VP Sbjct: 463 -ITLEKALNGSKDFRQAYDSRPEVKKLIDLAQSVEGLPRNAGTHAAGVIIAPHNMKNYVP 521 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + + + +TQ++ +E+ GL+K DFLGL+TLT++ + F+ + G +VD+ IP Sbjct: 522 LQQGSEGGV-ITQYDKNKVEELGLLKMDFLGLRTLTVIGDCIRFIRETTGEEVDIDNIPL 580 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 D T +L T +FQLES+G+ + + + P+ ED+I LV+LYRPGP+ + + Sbjct: 581 ADEATCAMLRRGETACVFQLESAGITKLVMDLAPESFEDLIPLVALYRPGPLGTGMAEDF 640 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 ++G+ +HPL++P+LK+T GVI+YQEQVMQI L+G++L +AD+LRRAMGKK Sbjct: 641 IAGRHGQRTAKVLHPLMEPILKDTYGVILYQEQVMQITSALAGFTLGQADILRRAMGKKK 700 Query: 722 KEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 +E+D ++ FI GA K + I + ++ IF LL FA YGFNKSH+ AYA+++Y+TA++K Sbjct: 701 AKELDSMRQSFIDGAKKLHDIPEELSDQIFSLLQHFAGYGFNKSHSVAYALVAYETAYLK 760 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSL 839 H+ +F AA + + + +K+ + R N++I+PP VN +F V N I + L Sbjct: 761 AHWRPQFYAAFLNSIIGDADKVSWYINVCRNDNVKILPPDVNESGHNFTVHKNSSIRFGL 820 Query: 840 AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 A IK G I+ A + PF SL DFC RV+ + +N+RV+E+++ GA+D FG R Sbjct: 821 AGIKNTGDAAVDAIISARNEGGPFKSLTDFCCRVNMRVVNKRVIENMIKCGAMDSFGARR 880 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 Q+L ++ ++++ N +F + ++ I L + +NE+ + Sbjct: 881 SQMLSIIEQAVDLGAACQRDKANGQLGLFGDDSFGVTE-IKLPPLPEIPKQLILQNEKEI 939 Query: 959 LGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +GFY + HPL YK +L++ M + + G +R+A ++ K T++G + Sbjct: 940 IGFYVTDHPLSDYKQMLQRFMPLHQFGGETQVQDGQFVRVAGIITDCTIKNTKRGDTMAV 999 Query: 1018 VTFSEPAKEYEANFFP 1033 +T + + + FP Sbjct: 1000 LTLEDFSGRFPVIVFP 1015 >gi|15606309|ref|NP_213688.1| DNA polymerase III alpha subunit [Aquifex aeolicus VF5] gi|6014991|sp|O67125|DPO3A_AQUAE RecName: Full=DNA polymerase III subunit alpha gi|2983510|gb|AAC07087.1| DNA polymerase III alpha subunit [Aquifex aeolicus VF5] Length = 1161 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1076 (38%), Positives = 610/1076 (56%), Gaps = 90/1076 (8%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL +H+ +SLL+GA+ ++ ++ K A+ ++D NLF + +F + A GI Sbjct: 2 SKDFVHLHLHTQFSLLDGAIKIDELVKKAKEYGYKAVGMSDHGNLFGSYKFYKALKAEGI 61 Query: 68 QPIIGCQLDIDMQ---DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +PIIG + D T++ ++L+ +G + L++L + Y + Sbjct: 62 KPIIGMEAYFTTGSRFDRKTKTSEDNITDKYNHHLILIAKDDKGLKNLMKLSTLAY--KE 119 Query: 125 G-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G RI L++ G EGLI LT G N + AE+ + FK +FGD LY Sbjct: 120 GFYYKPRIDYELLEKYG-EGLIALTACLKGVPTYYASINEVKKAEEWVKKFKDIFGDDLY 178 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ + ++ ++++A +++ L+AT ++ +L+ ED AH VLMA+ + + Sbjct: 179 LELQANNIPEQEVANRNLIEIAKKYDVKLIATQDAHYLNPEDRYAHTVLMALQMKKTIHE 238 Query: 243 ---------KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC--SF-ILQVHAP 290 + P Y+ + E F +AL NT+E+ + SF I + Sbjct: 239 LSSGNFKCSNEDLHFAPPEYMWKKFE--GKFEGWEKALLNTLEVMEKTADSFEIFENSTY 296 Query: 291 ILPRFIEKECDDI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 +LP++ D+ K E LR A GL R+ +G + ++Y +RL++EL VI Sbjct: 297 LLPKY------DVPPDKTLEEYLRELAYKGLRQRIERG---QAKDTKEYWERLEYELEVI 347 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F+GYFLIV DFI WAKKN+IPVGPGRGS GS+ AYA+ ITD+DP++ LFERFL Sbjct: 348 NKMGFAGYFLIVQDFINWAKKNDIPVGPGRGSAGGSLVAYAIGITDVDPIKHGFLFERFL 407 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DFCQD R++VI YV+NKYGH+ VAQIIT+ ++AK LRDV RA+ +P Sbjct: 408 NPERVSMPDIDVDFCQDNREKVIEYVRNKYGHDNVAQIITYNVMKAKQTLRDVARAMGLP 467 Query: 469 YSQVDRLCKLIPNDPAH------------PVS--LQA-------IADD-SRFREARLADP 506 YS D+L KLIP PV LQ I D+ +FR+ P Sbjct: 468 YSTADKLAKLIPQGDVQGTWLSLEEMYKTPVEELLQKYGEHRTDIEDNVKKFRQICEESP 527 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 + +L+E + KLEGL RH S HAAG+VI +PLS+LVP+Y D ++ TQ++M +E+ Sbjct: 528 EIKQLVETALKLEGLTRHTSLHAAGVVIAPKPLSELVPLYYDKEGEV-ATQYDMVQLEEL 586 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GL+K DFLGLKTLT L+ + + +R GV ++ +P DD + Y LL T G+FQLES Sbjct: 587 GLLKMDFLGLKTLTELKLMKELIKERHGVDINFLELPLDDPKVYKLLQEGKTTGVFQLES 646 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683 GM++ L+ ++PD +DI+A+++LYRPGP+ + +V Y RK+GKE + P ++P+LK Sbjct: 647 RGMKELLKKLKPDSFDDIVAVLALYRPGPLKSGLVDTYIKRKHGKEPVEYPFPELEPVLK 706 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET GVI+YQEQVM+++Q+LSG++ EAD LR+A+GKK + M + K++FI GA + G + Sbjct: 707 ETYGVIVYQEQVMKMSQILSGFTPGEADTLRKAIGKKKADLMAQMKDKFIQGAVERGYPE 766 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 ++E + KFA Y FNKSH+ AY ISY TA++K HYP EF A +T E N K Sbjct: 767 EKIRKLWEDIEKFASYSFNKSHSVAYGYISYWTAYVKAHYPAEFFAVKLTTE-KNDNKFL 825 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KP 861 +DA+ F +I+PP +N V F + G+NRI + LA IKGVG TA+ I+EA K Sbjct: 826 NLIKDAKLFGFEILPPDINKSDVGFTIEGENRIRFGLARIKGVGEETAKIIVEARKKYKQ 885 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F L DF ++ ++K+N++V+E+LV AGA D R +LL + N EK Sbjct: 886 FKGLADFINKTKNRKINKKVVEALVKAGAFDFTKKKRKELLAKVAN-------SEKALMA 938 Query: 922 KHENIFAHEKGTFS--DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL--RK 977 ++F K D + LEK VLGFY SGHPLD Y+ +L R Sbjct: 939 TQNSLFGAPKEEVEELDPLKLEK--------------EVLGFYISGHPLDNYEKLLKNRY 984 Query: 978 MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I+ EE + + L ++ + KKT+ G + + E FP Sbjct: 985 TPIEDLEE---WDKESEAVLTGVITELKVKKTKNGDYMAVFNLVDKTGLIECVVFP 1037 >gi|218235458|ref|YP_002369400.1| DNA polymerase III DnaE [Bacillus cereus B4264] gi|228960872|ref|ZP_04122505.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar pakistani str. T13001] gi|229147164|ref|ZP_04275522.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST24] gi|296505075|ref|YP_003666775.1| DNA polymerase III DnaE [Bacillus thuringiensis BMB171] gi|218163415|gb|ACK63407.1| DNA polymerase III, alpha subunit [Bacillus cereus B4264] gi|228636274|gb|EEK92746.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST24] gi|228798768|gb|EEM45748.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326127|gb|ADH09055.1| DNA polymerase III DnaE [Bacillus thuringiensis BMB171] Length = 1108 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1033 (36%), Positives = 611/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL R + K H + RLD ELNVI+RM FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 + +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|229048311|ref|ZP_04193879.1| DNA polymerase III subunit alpha [Bacillus cereus AH676] gi|228723036|gb|EEL74413.1| DNA polymerase III subunit alpha [Bacillus cereus AH676] Length = 1108 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1033 (36%), Positives = 611/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL R + K H + RLD ELNVI+RM FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTTLLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 + +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|149919879|ref|ZP_01908355.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1] gi|149819326|gb|EDM78759.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1] Length = 1255 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1116 (36%), Positives = 613/1116 (54%), Gaps = 111/1116 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA+ +N++ K+ ++A+TD N+F A++F Q+A A G++PI Sbjct: 15 FAHLHLHTQYSLLDGAIRMNDLCGKVKERGMKSVAMTDHGNMFGAVQFYQQAKAHGVKPI 74 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 GC+ I D T++ IVLL GYQ L LVS +L + + R Sbjct: 75 FGCEAYIADGDAPAKTDRKNY------HIVLLAKNEVGYQNLQRLVSYGHL-EGFYYNPR 127 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L+E +EGL+ L+ G I R A +R+ + +F Y + Sbjct: 128 IDRKTLRE-HSEGLVGLSACLGGHISRMITGGDMDGARERIREYADIFEPGSYFLELQPN 186 Query: 191 GYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G + + + + QL ++P+VATN+ ++++ + AH+VLM + ++ + R + Sbjct: 187 GMELQEKVNADLAQLGRDLDVPIVATNDCHYVNQSEAYAHEVLMCMGMGRTINDEKRLKH 246 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + ++K +M F PEA+ N IAR C+ L + P LP F E D E Sbjct: 247 DCEEFFIKTPQQMWGYFERYPEAMHNAARIARMCNVELSLGKPELPDFKLPEGTD----E 302 Query: 308 ENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR A GL+ R+ + A+ K Y +RL+ EL +I MKF GYFLIV DFI+ Sbjct: 303 VEYLRKVAREGLDQRIRELRALGKAPDTDVYFERLERELGIIINMKFPGYFLIVWDFIKE 362 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AKK +PVGPGRGSGAGS+ AY++ ITDIDP+++ LLFERFLNP+R+SMPDFDIDFC DR Sbjct: 363 AKKMGVPVGPGRGSGAGSLVAYSMRITDIDPMQYDLLFERFLNPERVSMPDFDIDFCMDR 422 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+YV + YG +RV QI TF SL+A+ LRDV R ++ ++ + L K++P P Sbjct: 423 REEVIQYVTDHYGKKRVGQIATFHSLKARGLLRDVCRVMEKLPAEANELAKMVPEGPKVS 482 Query: 487 VSLQAIADDSRFR-------------EARL--------------ADPSVDRLLEISQKLE 519 +SL +AD R E +L ADP V ++++I LE Sbjct: 483 LSL-CMADPKAIRAKMKKEPEKAGKLEGKLQIAEAATKLRLRCEADPGVKQIVDIGCSLE 541 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL RHA HAAGIVIG+R L++ VP ++ D VTQ+ M +E+AGL+KFDFLGLKTL Sbjct: 542 GLNRHAGMHAAGIVIGNRELTEHVPCFK--ADDKIVTQYTMNDVEQAGLVKFDFLGLKTL 599 Query: 580 TLLQKSLDFL-----------AQRGVK---VDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 T+++ ++D + Q+G D+ IP DD E Y +++ T G+FQLES Sbjct: 600 TVIKHAVDQINGLEGPWRLDPTQQGTADKPFDIDTIPMDDAEVYAMISRGETTGVFQLES 659 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683 +G ++ L+ ++PD EDIIA V+LYRPGP++ +V + K+G+ KI H L+ +L+ Sbjct: 660 TGFKKLLQKLKPDVFEDIIAAVALYRPGPLEGGMVDQFIECKHGRRKIEYPHELLADVLR 719 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA-SKNGIS 742 ET GV +YQEQVM AQ+L+G+SL AD++RRAMGKK +EM++Q+ F+ G S N I Sbjct: 720 ETYGVFVYQEQVMLAAQILAGFSLGGADLMRRAMGKKKVKEMERQRALFVEGCESVNNID 779 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 A IF+L+ KFA YGFNKSH+AAY +I+YQTA++K HYP F+ MT + D E + Sbjct: 780 AKKANEIFDLIDKFAGYGFNKSHSAAYGLITYQTAYLKHHYPEAFMCGLMTCDKDKSENV 839 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKV-------------------------------- 830 KF +AR +I ++PP VN DF V Sbjct: 840 VKFIAEARSMDITVLPPDVNESASDFNVVVRDRPELSEEELKKKKQLARKSKKVRRRQAR 899 Query: 831 GDNR-------IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVL 882 D+R I + + A++ VG I+ A ++ PF ++ + C RVD K++N+R L Sbjct: 900 EDSRPEGKLLAIRFGMGAVRNVGGNAVDSILAAREEEGPFKNIFELCRRVDLKRVNKRTL 959 Query: 883 ESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 E LV +GA D G R ++ ++++ + Q +++R + +F SD++ + Sbjct: 960 EGLVHSGAFDSVSEGQHRAGVVAAIESAVEQGQSSQRDRESGQGGLF---DAFSSDQVYV 1016 Query: 941 EKFSVENSSV---RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 E++ R NE+ LGFY +GHPLD Y+ + + E + G + L Sbjct: 1017 EEYPKVREWAPKQRLLNERDALGFYLTGHPLDRYQQDIDRHASVRIGELRKELAGQEVVL 1076 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ +Q T+ G +G+ + E FP Sbjct: 1077 GGVITEMRQVTTKAGKTMGFFQLEDQFGRVEVIVFP 1112 >gi|294792867|ref|ZP_06758014.1| DNA polymerase III, alpha subunit [Veillonella sp. 6_1_27] gi|294456766|gb|EFG25129.1| DNA polymerase III, alpha subunit [Veillonella sp. 6_1_27] Length = 1135 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/1015 (36%), Positives = 618/1015 (60%), Gaps = 39/1015 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + QPA+AITD N+++A+ F ++ A G++PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGKQ 127 IGC++ + ++N +G++ + ++LL T EGY+ L+++VS+ +L + + Sbjct: 64 IGCEVYV-TENNRFDRPEGRSR-ERLKHLILLAETMEGYRNLVKIVSKASTEGMLYRPRA 121 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 + + ++G+I L+ G I + ++ + A++ + + + +G D ++ + Sbjct: 122 DRDLLRQY-----SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEI 176 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H + + + ++++L+ + L +VA+N+ ++ +ED +A D+ + ++ ++ DR Sbjct: 177 QNHGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDR 236 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + D YLK+ EM +F +P A+ENT++IA RC+ LP F D+ Sbjct: 237 LKFPNDEFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHF------DVP 290 Query: 305 KEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E ++ + V E+ RL G +++ ++RLD+EL+VI M F YFLIV D+ Sbjct: 291 EGETSKTYLRKVCEREIPRLY------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDY 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 +++A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC Sbjct: 345 VRYAREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++R + I YV KYG RV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ Sbjct: 405 YEKRGQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNEL 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++L + +D +V L + +KLEG+ R++STHAAG+VI PL V Sbjct: 465 G--ITLDKALQGKDLKALYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602 P+ ++ + VTQ++ IE+ GL+K DFLGL+TLT++ +L + A RG+ +DL IP Sbjct: 523 PV-QNANDEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIP 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 DD +LT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + +V Sbjct: 582 LDDAAACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVAD 641 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + +R++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK Sbjct: 642 FIDRRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKK 701 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + + Q+E FI G+ NGI +++A +F+LL FA YGFNKSH+AAYA I+YQTA++K Sbjct: 702 KESVLKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLK 761 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HY EF+AA+MT M N++K+ + ++ N++++ P +N F V D+ I + L Sbjct: 762 AHYFPEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQDDSIRFGLG 821 Query: 841 AIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK VG R I E + + + DFC RVD++ +N+R+LESL+ GA+D F +R Sbjct: 822 GIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNRVVNKRLLESLIRCGAMDGFQENRN 881 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957 QLL ++ Q +K+ N+F E F T+E S ++ + ++E+ Sbjct: 882 QLLHMYESAQAVGAKEQKDAAMGTMNLFGDMEEAVDFIPVPTVEDLSEDD---KLKDEKE 938 Query: 958 VLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 GFY +GHPL Y L + + E+ G I ++ +K + T++ Sbjct: 939 YTGFYITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKR 993 >gi|124023285|ref|YP_001017592.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9303] gi|123963571|gb|ABM78327.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9303] Length = 1171 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1060 (37%), Positives = 603/1060 (56%), Gaps = 55/1060 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++ + PA+A+TD ++ A+E + A I+P Sbjct: 2 AFVPLHNHSDYSLLDGATQLPQMVKRAKELGMPALALTDHGVMYGAIELLKLCKNAEIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + + P P +V+L A GY+ L++L S +L Sbjct: 62 IIGNEMYV-------INGSIEDPQPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRG 114 Query: 127 QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + R C+ L + +EGLI+ T G I +A VA ++++FG Y Sbjct: 115 RGIFARPCIDKELLKAYSEGLIVATACLGGEIPQAILRGRIDVARDVARWYQEVFGKDFY 174 Query: 184 VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR ++V +A + L+ATN++ +LS+ D EAHD L+ V ++S Sbjct: 175 LEVQDHGSPEDRIVNVEIVSIAKELGIELIATNDAHYLSKNDVEAHDALLCVLTGKLISD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R T Y+K+ EM +F+D L EA+ NT +A + + + +PRF Sbjct: 235 EKRLRYTGTEYIKSEQEMGRLFADHLEPDVLQEAIANTAAVAEKVEEYSILGSYQMPRFP 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSG 355 E + L + GL RL +A D Y +RL +EL V+ +M F Sbjct: 295 IPE----GHSAVSYLHEVSEQGLRQRLK---LATADPIDDHYGERLTYELGVMEQMGFPT 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D+I++A++ IPVGPGRGS AGS+ AYAL IT+IDP++ LLFERFLNP+R SM Sbjct: 348 YFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVQNGLLFERFLNPERKSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D DFC DRR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL Sbjct: 408 PDIDTDFCIDRRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRL 467 Query: 476 CKLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 KLIP P L A I DS FRE DP V + ++++ ++EG + HAAG Sbjct: 468 AKLIPVVRGKPAKLAAMIGSDSPNAEFREKYQNDPVVTKWVDMAMRIEGTNKTFGVHAAG 527 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA- 590 +VI PL LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + Sbjct: 528 VVIAAEPLDNLVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEI 586 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 G ++D +P +D ET+ LL GIFQLESSGMRQ + ++P +EDI ++++LY Sbjct: 587 SNGERIDPDQLPPEDPETFALLARGDLEGIFQLESSGMRQIVRDLRPSSLEDISSILALY 646 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+D ++ + NRK+G+E I H ++P+LKET G+++YQEQ+M+IAQ L+GYSL Sbjct: 647 RPGPLDAGLIPKFINRKHGREAIDFAHAALEPILKETYGIMVYQEQIMKIAQDLAGYSLG 706 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 EAD+LRRAMGKK EM K + F+ GAS++G+ K IA +F+ + FA+Y FNKSH+ A Sbjct: 707 EADLLRRAMGKKKVSEMQKHRSIFVEGASRSGVDKKIADELFDQMVLFAEYCFNKSHSTA 766 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++YQTA++K HYPV ++A+ +T+ +K++++ + I++MPP VN +DF Sbjct: 767 YGAVTYQTAYLKAHYPVAYMASLLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDF 826 Query: 829 KVGDNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 +RI + L+A++ +G R I D PF SL D C R+ S LNRR LESL+ Sbjct: 827 TPAGDRILFGLSAVRNLGDGAIRQLIANRDGDGPFVSLADLCDRLPSNVLNRRGLESLIH 886 Query: 888 AGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 GALD +R QL+ L+ + +A ++R + N+F G +D+ T ++ S Sbjct: 887 CGALDAIDPESNRAQLIADLELLINWAASRARDRLSGQGNLFDLVAGA-ADEQTSDELST 945 Query: 946 ENSSV---------RFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIRGN 993 + + E+ ++GFY S HPL + P +L +G+ E+ + Sbjct: 946 APKAAPVPDYPPTEKLRLEKELVGFYLSDHPLKQLTAPAQLLAPIGLASLEDQPDKAK-- 1003 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+ +Q TRKG R+ + + EA FP Sbjct: 1004 -VSVITMLTEMRQVTTRKGDRMAVLKIEDLTGGCEAVVFP 1042 >gi|313888087|ref|ZP_07821761.1| DNA polymerase III, alpha subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845777|gb|EFR33164.1| DNA polymerase III, alpha subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 1141 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1046 (36%), Positives = 612/1046 (58%), Gaps = 49/1046 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +HS YSLL+G+ ++ + ++ A+A+TD N++ A+ F + AG++P Sbjct: 3 NFVHLHLHSEYSLLDGSTRISLLPQRVKDLGMDAVALTDHGNMYGAIAFYKACKDAGVKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ I +D MT + +T ++LL EG++ ++++VS Y+ D Sbjct: 63 ILGCEVYISEKD---MTVKDRTN--KRYHLILLAENNEGFKNIMKIVSTGYV-DGYYYKP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L++ ++G+I + G + +A + A+K L ++ +FG+ ++ LQ Sbjct: 117 RVDKEVLKKY-SKGVIATSACLGGEVQKALLNRDKEAAKKAALEYRDIFGEGNFFLELQD 175 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R ++V L+ +LPL A+N+ +L +ED ++HDVL+ + V+ DR + Sbjct: 176 HGMPEQARVNRELVLLSEELDLPLTASNDVHYLMKEDSKSHDVLLCIQTGKTVNDTDRMK 235 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D YLK+ EM ++F + PEALENTV+IA RC+ ++ H LP FI D Sbjct: 236 FPSDEFYLKSPDEMAALFPENPEALENTVKIAERCNVEIKFHDLHLPEFI---VPDGYSH 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 EE L+ A+ G+ R + ++R +FE N I M + YFLIV DFI++ Sbjct: 293 EEY-LKKLALEGMIKRYENVT-------DEIKERFEFEFNTIKNMGYVDYFLIVWDFIRY 344 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+K+ I VGPGRGS AGS+ +Y L ITD+DPL F LLFERFLNP+R+SMPD DIDFC +R Sbjct: 345 ARKHEIQVGPGRGSAAGSMVSYCLGITDVDPLEFDLLFERFLNPERVSMPDIDIDFCYER 404 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YV KYG VAQI+TFG++ A+ A+RDVGRAL M Y++VD + K +P Sbjct: 405 REEVIDYVNRKYGDSHVAQIVTFGTMAARNAIRDVGRALDMSYAKVDYIAKQVPQALNMT 464 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ F+ + L++++ KLEGL RH STHAAG+VI L++ VP+ Sbjct: 465 IE-KALEVSETFKGIYDGEEDSRLLIDMALKLEGLPRHTSTHAAGVVISKDELTEYVPLT 523 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 R+ + + TQFNM +E+ GL+K DFLGL+TLT+++ +++ + + +G ++ ++D Sbjct: 524 RNDK--IIATQFNMIELEELGLLKMDFLGLRTLTVIRDAINLIKENQGKTINFDNFNYND 581 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 E + TLG+FQ ESSGMR L+ ++PD D++A +L+RPGP+ I + K Sbjct: 582 PEVLKMFAKSETLGVFQFESSGMRAFLKELKPDEFSDLVAANALFRPGPMKQIPKFVGSK 641 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 + K I IHP ++P+LK T G I+YQEQVMQI Q + GYSL AD++RRA+ KK + M Sbjct: 642 HDKSTISYIHPKLEPILKSTYGCIVYQEQVMQIVQQIGGYSLGRADIVRRAISKKKMKVM 701 Query: 726 DKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +++++ FI GA NG+ + A I++L+ FADY FNKSH+ AY+V++Y+TA Sbjct: 702 EEERKNFIYGNKEEGVCGAIANGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVVAYRTA 761 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W+K +YP EF+AA ++ ++++++ + ++ ++ I+I+PP++N +F V DN+I + Sbjct: 762 WLKYYYPREFMAAQISTYTNDIKQVSLYIEEIKRLGIEILPPNINYSYKNFTVEDNKIRF 821 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGALDCF 894 L A+K VG I+ P+ SL+DF R+ D LN+R +ESL+ GA+D F Sbjct: 822 GLKAVKNVGDNLIDVIVRTRDKGPYKSLKDFVDRINALDKSALNKRAVESLIRCGAMDDF 881 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q L + I + KN ++F E D L F ++ + + Sbjct: 882 RGNRAQYLAIYEGILSSSSNTAKNNVMGQFSLF-EEADLQEDLPRLRDFPQKD---KLDM 937 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIRGNNIRLAAMVVSKQQK 1007 E+ V+G Y SGHPLD Y+ ++ K + Y E++ +R + +++ ++ SK+ Sbjct: 938 EKEVIGMYISGHPLDPYRELIEKNSSINTNQIFEKYRENL--LRRSKVKVGGILKSKKTM 995 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ + + + E FP Sbjct: 996 ITKTNKMMAFAALEDLFGTIELVIFP 1021 >gi|20808235|ref|NP_623406.1| DNA polymerase III DnaE [Thermoanaerobacter tengcongensis MB4] gi|20516832|gb|AAM25010.1| DNA polymerase III alpha subunit [Thermoanaerobacter tengcongensis MB4] Length = 1148 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1067 (37%), Positives = 619/1067 (58%), Gaps = 80/1067 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 5 FVHLHVHTEYSLLDGSCRIKDLIAKTKELGMKAIAITDHGAMYGVIDFYKEAVAQGIKPI 64 Query: 71 IGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IGC++ + MQD + +VLL GY+ L+++V+ L + Sbjct: 65 IGCEIYVAPRRMQDREYGIDDENY------HLVLLAKDMTGYKNLMKIVTAASL-EGFYY 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ +L+ +EGLI L+ +G + + A++ L + +FG Y+ L Sbjct: 118 KPRVDKEFLKN-HSEGLIALSACLAGEVPSLILRGDYEKAKEVALFYDSIFGRGNFYLEL 176 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ + ++V+++ +PLVATN+ +L ++D AH+VL+ + + +DR Sbjct: 177 QDHGILEQKKVNRELVRMSKETGIPLVATNDVHYLEKKDARAHEVLLCIQTGKTIEDEDR 236 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 D YLK+ EM +F+ EA+ENT +IA C+ + + LP++ E D Sbjct: 237 MLFPTDEFYLKSPEEMEELFACCKEAIENTEKIAEMCNIEFEFNKTKLPKYDLPEGVD-- 294 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LRN GL R +Q+ RL++EL+VI +M + YFLIV DFI Sbjct: 295 --SYEYLRNLCYEGLYKRYKS-------PSQEVIDRLEYELSVIKQMGYVDYFLIVWDFI 345 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AK N I GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD D DFC Sbjct: 346 KFAKDNGIMTGPGRGSAAGSLVAYTLGITNVDPIKYNLLFERFLNPERVSMPDIDSDFCY 405 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + Sbjct: 406 ERRQEVIDYVVRKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDEIAKMIPFELG 465 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ + +E D V +L++IS+ LEGL RHASTHAAG+VI PL VP Sbjct: 466 MTID-RALELNPELKERYEKDERVKQLIDISKALEGLPRHASTHAAGVVISKEPLVNYVP 524 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + ++ D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + +G+ +DL + + Sbjct: 525 LQKN--DDSVVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGIIIDLDSLNY 582 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD + Y L++ T G+FQLES GMRQ + ++P +EDIIA +SLYRPGP+D I Y Sbjct: 583 DDPKVYELISKGETEGVFQLESPGMRQFMTELKPKNLEDIIAGISLYRPGPMDQIPKYLA 642 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 +N EKI HP++ P+L+ T G ++YQEQVMQI + ++GYSL AD++RRAM KK + Sbjct: 643 NRNNPEKIEYEHPILKPILEVTYGSLVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKMD 702 Query: 724 EMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 M+++++ FI GA +NG+ + A +F+ + +FA+Y FNKSHAAAYAV Sbjct: 703 VMEQERKNFIYGIVDEEGNVVVPGALRNGLDEETANRLFDQMLEFANYAFNKSHAAAYAV 762 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 I+YQTA++K ++PVEF+AA + +DN++KI + Q ++ I+++PP +N F V Sbjct: 763 IAYQTAYLKRYFPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVV 822 Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 ++I + L+A+K VG I+ E A F S+ DF R+ +LN++ +ESL+ AGA Sbjct: 823 GDKIRFGLSAVKNVGINVTEEIVREREARGKFKSVIDFFERMQDSQLNKKAIESLIKAGA 882 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 G R QLLQS D K + V+K +++ E +I+L + S E+ + Sbjct: 883 FASLGVKRSQLLQSYD---KLIESVKKAKSSAIEG-----------QISLFEVSEEHKEI 928 Query: 951 RF--------------ENEQRVLGFYFSGHPLDVYKPILRKMG--------IKGYEESVA 988 F E+ LG Y SGHPL+ Y + K+ I +E Sbjct: 929 DFRFPDVEEYPKNRILSMEKETLGLYISGHPLEEYLEDIPKITNVTTLDFKINPEDEMFT 988 Query: 989 TIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +N + +A ++V+K+ K TR + + +VT + E FP Sbjct: 989 SKLEDNQEVTIAGVIVAKKVKFTRNSNIMAFVTLEDMYGTVEVIVFP 1035 >gi|256846853|ref|ZP_05552308.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_36A2] gi|256717819|gb|EEU31377.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_36A2] Length = 1132 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1026 (37%), Positives = 607/1026 (59%), Gaps = 67/1026 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSL EG S+++ L K ++A+TD N+F A+EF QKA GI+P Sbjct: 3 NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMSSLAVTDYANMFCAVEFYQKAKKMGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L I +D + ++ LL GY+ L++L S +Y ++ ++ + Sbjct: 63 IIGLELPISNRDE-----------QNIFTLTLLAKNYNGYKNLVKLASELYKKNENRE-L 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFG-DRLYVNLQ 187 +I L++ ++ LI+L+ +G I +A +SS +++ + ++F + Y+ +Q Sbjct: 111 KINKEVLKKY-SQDLIVLSSSINGEIGKAILTDSSDEKINKIIDEYIEMFSKENFYLEIQ 169 Query: 188 RHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + E++++ LA + L LVATNN ++ ++ YE D+++ + V + Sbjct: 170 A----NELPETKIINDKFYNLAKLNGLELVATNNVYYVDKDGYELQDIIICIQSGLKVKE 225 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++R + ++ + YLK++ EM + +A+EN IA C+ + P + Sbjct: 226 RNRKKAISKELYLKSKEEMQRFLGEKFEKAIENANHIADLCNVEISFGNLQFPYY----- 280 Query: 301 DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354 ++ E +G++ L I K Y +D RL++EL+VI +M +S Sbjct: 281 -EVPSE---------YSGMDEYLKTICHTNIKKLYKENLTKDILDRLEYELSVIIKMGYS 330 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYF++V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S Sbjct: 331 GYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 390 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+ Sbjct: 391 MPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDK 450 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 L KLI P + + + ++ + D + ++++++ ++E RH STHAAGI+I Sbjct: 451 LAKLIS--PFQALE-RTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILI 507 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593 L + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + Sbjct: 508 TKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKN 567 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + VDL IP DD + +H+L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPG Sbjct: 568 IDVDLYKIPLDDKKVFHMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPG 627 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+ + +V + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD Sbjct: 628 PLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEAD 687 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK M + +E+FI A NG ++ + IFEL+ KFA YGFNKSH+ AYA+ Sbjct: 688 LLRRAMGKKNFAIMRENREKFIERAINNGYTEEKSEEIFELIDKFAGYGFNKSHSVAYAM 747 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISY T + K HYP + AA MT E+ I + D ++ I++ P+VN+P F+V Sbjct: 748 ISYWTGYFKVHYPAYYYAAVMTSEISETGDIAYYFNDTKEHGIRVYSPNVNSPSAYFEVK 807 Query: 832 DNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + I YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GA Sbjct: 808 NEGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGA 867 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVEN 947 LD +R + S+D + Y+ K + N+F T DK L E F+++ Sbjct: 868 LDEIKGNRKEKFLSIDKVLDYSSKASKTDEIQQMNLFGEAAKTI-DKFNLAISEDFTLDE 926 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGNNIRLAAMV 1001 + E+ LGFY S HPLD YK IL IK E+ V G L ++ Sbjct: 927 ---KLNKEKEFLGFYLSSHPLDRYKDILITFSIKKLSEIDLEEKQVVKTFGTITNLKKII 983 Query: 1002 VSKQQK 1007 K+++ Sbjct: 984 TKKEEQ 989 >gi|291285989|ref|YP_003502805.1| DNA polymerase III, alpha subunit [Denitrovibrio acetiphilus DSM 12809] gi|290883149|gb|ADD66849.1| DNA polymerase III, alpha subunit [Denitrovibrio acetiphilus DSM 12809] Length = 1179 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1050 (38%), Positives = 616/1050 (58%), Gaps = 37/1050 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEFSQKAC 63 + S FVHL +H+ YSLL+GA+ + +++ KI P + I+D + ++F ++A Sbjct: 1 MNNSKDFVHLHLHTQYSLLDGAILVGDLMQKIKEKGMTPMVGISDHGTMHGIVDFYRQAR 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMT-NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 A I+PI+GC++ + T +G+ +VL +G L +LVS + Sbjct: 61 ANDIKPILGCEVYVAPDSRFNTTYERGQE---RNHHLVLQAVNNKGLSNLQKLVS-LAQF 116 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 + R+ + + +EGLI ++ +G I R + A ++ +FG D Sbjct: 117 EGFHYKPRVDKEIMAQY-SEGLIAMSACLAGEIPRKIIRDQYDEAVAAAHEYRDIFGKDN 175 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 ++ +Q + ++ ++ +++++ +PLVATN+ +L++ D+ +H+VL+ + + + Sbjct: 176 FFLEIQENGIEEQLMVNRNIIKMSRDSGIPLVATNDCHYLNKGDHLSHEVLICIQTQSTI 235 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + +R + D ++K EM + F ++P+AL NTVEIA RC+ + LP + E Sbjct: 236 NSPNRFEIHSDQLWVKTPEEMWAAFGEVPDALTNTVEIANRCNTSITFGELHLPEYEVPE 295 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 I + L + A GL +LA+ I H Q Y R+ E +VI F+GYFLI Sbjct: 296 GYTIS----SYLEHLARKGLHEKLAK--IPSEKH-QIYYDRMQKEFDVIIGKNFAGYFLI 348 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DF+ +++ IPVGPGRGSGAGS+ AY+L ITD+DP+ F+LLFERFLNP+R SMPDFD Sbjct: 349 VWDFMNYSRSVGIPVGPGRGSGAGSLVAYSLGITDLDPIYFNLLFERFLNPERSSMPDFD 408 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC R++VI+YV+ KYG +RV+QIITFG L ++ +RDVGR L++P VD+L K I Sbjct: 409 IDFCVKGREQVIKYVREKYGDDRVSQIITFGKLLGRSTVRDVGRVLEVPLPIVDKLAKAI 468 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+DP + +A+ D R+ A + +L + KLEGL R+ HAAGIVI D+PL Sbjct: 469 PSDPGMTLR-KALKKDEDLRKVFQAAEQGELILNHAVKLEGLVRNTGMHAAGIVISDKPL 527 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 ++ VP+ R +++ + QF +E GL+KFDFLGL LT++ +++ + + RG +D+ Sbjct: 528 NEYVPLCRGQNNEV-IAQFEKDTLESVGLVKFDFLGLNNLTIIDEAIKQIKKNRGEDLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP D+ + Y LL+ T +FQLESSGM+ L+ ++P+ EDIIALV+LYRPGP+++ Sbjct: 587 ASIPLDNKKVYELLSRGDTTAVFQLESSGMKNLLKKLRPEQFEDIIALVALYRPGPMESG 646 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 ++ + RK G+E+I I P ++ +LKET+GV+IYQEQVMQIAQ++ GYSL AD LRRA Sbjct: 647 MLDSFVKRKYGEEEIDYIFPDLEEILKETRGVVIYQEQVMQIAQIIGGYSLGSADNLRRA 706 Query: 717 MGKKIKEEMDKQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 MGKK EM+KQK+ F I GA G +A ++F+ LAKFA YGFNKSH+AAY Sbjct: 707 MGKKKAAEMEKQKQFFLYGDGDTIPGAKARGYDMKMAEDLFDKLAKFAGYGFNKSHSAAY 766 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+ISYQTA++K YPVE++AA ++ E+D +KI F ++ + I ++PP++N V+F+ Sbjct: 767 ALISYQTAYLKALYPVEYMAAILSCEIDKGDKIVTFTEECKNMGIDVLPPNINKSGVNFE 826 Query: 830 VGDNRIYYSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I++ L AIK VG + E + F ++ DFC RVD + N+RVLESLV A Sbjct: 827 IEGTAIHFGLGAIKNVGFNAIEAALQERDKNGEFKNIYDFCERVDLRACNKRVLESLVKA 886 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA DC G +R Q LQ ++ + Q K +I A SD+ E+F + Sbjct: 887 GAFDCSGKNRRQNLQVIERALEEGQRKHKMAEQGIMSIEAFLVDEESDE--EEQFFFPDV 944 Query: 949 SVRFEN-----EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 EN E+ VL FY S HPL +Y IL+ I E + G+ + + Sbjct: 945 EEMPENELLKMEKEVLDFYISNHPLAIYNNILKTFTIPIGEVANPDSEGDIVIGGLVKHV 1004 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K+ +KG ++ + + E E FP Sbjct: 1005 KRIVTKKKGEKMAFANVEDMDSEVEVVVFP 1034 >gi|291296502|ref|YP_003507900.1| DNA polymerase III subunit alpha [Meiothermus ruber DSM 1279] gi|290471461|gb|ADD28880.1| DNA polymerase III, alpha subunit [Meiothermus ruber DSM 1279] Length = 1257 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/1093 (37%), Positives = 607/1093 (55%), Gaps = 81/1093 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL H+ +SLL+GA L ++L K + ++P +A+TD N+F A++F + A G++ Sbjct: 22 FAHLHQHTQFSLLDGAARLKDLLKWVKQVSPEEPMLAMTDHGNMFGAVQFYKYATELGVK 81 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ 127 PIIG + + + QGK + LL EGYQ L L SR YL GK Sbjct: 82 PIIGYEAYVAAESRFD-RKQGKGLDGGYFHLTLLAQNMEGYQNLSRLASRAYLEGFYGKP 140 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 RI L+E G+I L+G I + + AEKRL + +FG +R ++ + Sbjct: 141 --RIDREILRE-HNAGIIALSGCLGAEIPQFILQERFEDAEKRLQEYLAIFGPERYFIEI 197 Query: 187 QRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++++ ++V+ + A + L LVATN+ ++ ++D EAH VL+AV +R Sbjct: 198 QNHGLAEQHKVNRVLKEFADKYGLGLVATNDGHYVKKDDAEAHAVLLAVQSKATWDDPNR 257 Query: 246 PRVTPDH-YLKNRSEMVSIFSD--------LPEALENTVEIARRCSFIL-----QVHAP- 290 + D Y+K+ EM F D + E +N+V I R C L Q P Sbjct: 258 WKFPCDEFYVKSPQEMRQTFEDERNLWGSRMDELFDNSVNIGRMCEVELVPKKVQYRIPK 317 Query: 291 --------------------ILPRFIEKECDDIQKEEENELR------NKAVAGLEVRLA 324 +L R+ ++ ++ +E +L + V LE+ Sbjct: 318 YPLPEGRTEVVYFRELTFNGLLKRYPDRVTPELYREFLRKLGRPVPHGDGEVLALELARI 377 Query: 325 QGAIAKGYHAQDYRQ-----------RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373 + A H + R+ R +EL V+ RM F GY LIV+DFI WAK N I Sbjct: 378 EDLEATRAHLPELREGIQWDGWAILSRAIYELTVVERMGFPGYLLIVSDFINWAKNNGIS 437 Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433 VGPGRGS AGS+ YA IT+IDPL ++LLFERFLNP R+SMPD D DF RR EVI Y Sbjct: 438 VGPGRGSAAGSLVTYATRITNIDPLEYNLLFERFLNPARVSMPDIDTDFSDVRRGEVIEY 497 Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAI 492 V+ +YG E VAQI TFG+L +KAA++D R +P + D L KLIP P+ L +AI Sbjct: 498 VRQRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVTFGKPMPLDKAI 557 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 R DP V R+LE++QKLEGL R +S HAAG+VI D PL +P+ R + Sbjct: 558 ETIPDLRAEMEKDPLVKRVLEVAQKLEGLSRQSSVHAAGVVISDVPLRDYIPLMRAGDTG 617 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHL 611 VTQ++M +E G +K DFLGL+TL+ L + + + +GV++D +P DD +T+ L Sbjct: 618 AKVTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIIKESKGVELDYDNLPIDDAKTFEL 677 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L T G+FQL+S+GM A+ G++P I+DIIAL +LYRPGP++NI Y R +G+E++ Sbjct: 678 LGRGETKGVFQLDSAGMTSAVRGLKPRRIQDIIALGALYRPGPMENIPTYIRRHHGREEV 737 Query: 672 V-----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + I P+L+ET G+ +YQEQ+MQIA ++GYSL EAD+LRRAMGKK EEM Sbjct: 738 SYPQFPNAEKFIRPILEETYGIPVYQEQIMQIATAVAGYSLGEADLLRRAMGKKKMEEMV 797 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 KQ+ +F GA+KNGI A +F+LL FA+YGFNKSHAAAYA+++YQTA++K H+PVE Sbjct: 798 KQRAQFKEGAAKNGIPAEEADRLFDLLEAFANYGFNKSHAAAYAILTYQTAYVKAHFPVE 857 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F AA +T+E + +K+ ++ + AR ++++PP +N F+ + + + L+A+K VG Sbjct: 858 FFAAVLTVERHDSDKVAEYIRAARTAGVEVLPPDINQSGFSFRALEKSVLFGLSAVKNVG 917 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 T I+ E P+ SL DF R+D N+RV+ESL+ AGA D FG R +L +L Sbjct: 918 ETPTELILRERERGGPYKSLPDFLRRLDGTVANKRVVESLIKAGAFDAFG-PRGPMLAAL 976 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D++ K+AQ + + +F S + + ++ + E+ LG Y +G Sbjct: 977 DDLLKWAQAEREQAQSGMMGLFGE-----SLEPVIPAVPQLDAITQLRMEKEALGIYVTG 1031 Query: 966 HPLDVYKPILRKMG--IKGYEESVATIRGNNIR----LAAMVVSKQQKKTRKGSRIGWVT 1019 HPL Y+ + I+ ++ A ++GN R LA MV +K T+ G + T Sbjct: 1032 HPLSRYQGLREAASCTIEELPQAFAELKGNRNRARLLLAGMVEGIVRKPTKSGGMLVRFT 1091 Query: 1020 FSEPAKEYEANFF 1032 ++ E F Sbjct: 1092 LADETGAVEVVAF 1104 >gi|228923349|ref|ZP_04086637.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836303|gb|EEM81656.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1108 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1033 (36%), Positives = 611/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIKNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL R G + + +RLD ELNVI+RM FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLRKRY-------GAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 + +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|228967702|ref|ZP_04128721.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar sotto str. T04001] gi|228791994|gb|EEM39577.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar sotto str. T04001] Length = 1108 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1033 (36%), Positives = 612/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL R G + + +RLD ELNVI+RM FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLRKRY-------GAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDVR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 + +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|294827603|ref|NP_710439.2| DNA polymerase III subunit alpha [Leptospira interrogans serovar Lai str. 56601] gi|293385447|gb|AAN47457.2| DNA polymerase III alpha subunit [Leptospira interrogans serovar Lai str. 56601] Length = 1136 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1009 (38%), Positives = 591/1009 (58%), Gaps = 42/1009 (4%) Query: 43 AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102 ++A+TD N+F A+EF +A GI+PIIG + + + + T K ++LL Sbjct: 3 SVAMTDHGNMFGAVEFYNEAIKQGIKPIIGSEFYVS-PNRKQETEMVKIADGNAYHLILL 61 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 EGY+ LI L S+ Y K++ RI L +EGL+ LT +G ++R Sbjct: 62 AKNEEGYKNLIRLSSKSYTEGFYKKA-RIDYDLLDRY-SEGLVCLTACLAGEVNRKILEG 119 Query: 163 ----SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNS 217 S Q+A K F+K + Y+ +Q H ++ QV + +PLV TN+S Sbjct: 120 KIDESFQLAGKLNEIFRK---EDFYMEIQNHGIPEQMTVAKQVYEFGKKTGIPLVVTNDS 176 Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 FL + D EA D+L+ + ++ + Y+KN EM IF ++PEA NT+EI Sbjct: 177 HFLKKNDQEAQDILLRIGMQKRITDPMEFGFNGEFYVKNGDEMAKIFPEIPEAFYNTLEI 236 Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQ 335 + + + LQ +LP F E D A + LE + +G I + Y + Sbjct: 237 SNKVNLKLQFGNYLLPEFEVPEGYD------------ADSYLEKLIWEG-IERKYPNLSP 283 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 + ++R+ FELN I MKF+GYFLIV D+I +AK+N IPVGPGRGS AGS+ AYAL IT++ Sbjct: 284 EIKERVIFELNTIKNMKFAGYFLIVQDYINYAKRNGIPVGPGRGSAAGSIVAYALGITNV 343 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 +PL+ +LLFERFLNPDR MPD D DFC +RR+EVI Y++ +YG E+V QIITF SL AK Sbjct: 344 EPLQHNLLFERFLNPDRKDMPDIDTDFCVERREEVINYIRRRYGEEKVGQIITFNSLAAK 403 Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515 AAL+DV R L +P+ + + + K PN +S +A++ S + D ++ I+ Sbjct: 404 AALKDVARVLNLPFGEANEMTKAFPNKLGMSIS-EALSTSSELKNFSEKDDINHKIFAIA 462 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIK 570 Q+LEG YR HAAG+VI PL ++VP+ + P VTQ++ +E GLIK Sbjct: 463 QRLEGNYRQPGRHAAGVVISPYPLEEVVPLSTVAEKEKPGVRAIVTQYDKNNLESIGLIK 522 Query: 571 FDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 D LGLK LT L ++ + Q RG++++L I +DD TY LL TLGIFQLES+G+ Sbjct: 523 MDILGLKNLTTLDYAIKLIEQRRGIRINLDEISYDDANTYSLLRKANTLGIFQLESTGIT 582 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687 + Q ++I+AL++LYRPGP+ ++ Y +RK+GK+++ HP +P+LKET G Sbjct: 583 DLVAKSQVSNFDEIVALIALYRPGPMGEGMLDEYLDRKSGKKQVTYPHPSCEPILKETFG 642 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 V +YQEQVM I++++ G+S+ ++DVLR+AM KK + MDK K +F+ GA K GI + +A Sbjct: 643 VPVYQEQVMSISRVVGGFSVGDSDVLRKAMAKKKADLMDKLKVQFVEGAVKQGIQEKVAK 702 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++FE L +F YGFNKSH+ AYA+I+YQTA++K +Y +E+L A + + I K+ Sbjct: 703 DLFEQLERFGGYGFNKSHSVAYAIITYQTAYLKANYTIEYLTALLASDHGKTTDIVKYIN 762 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865 +AR+ IQI+ P V+ F V DN I + L+A+KGVG T A I++A F +L Sbjct: 763 NAREMGIQILNPDVSESQASFSVIDNTTIRFGLSAMKGVGETAANSIIQARTKVGSFRTL 822 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE- 924 +DF +D++ +N++V E+L+ AGALD FGY+R L +S+D+I +AQ E+ R N+ + Sbjct: 823 QDFALNIDTRLINKKVFEALIQAGALDSFGYTRKCLFESVDSILTFAQK-EQERANEGQF 881 Query: 925 NIFAHEKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 ++F +E+ +FS + L K ++E + + E+ + G Y SGHPLD Y+ L+ + Sbjct: 882 SLFGNEESSFS--LNLPKDALEWEIDEKLKREKAIAGLYLSGHPLDKYEKQLKSLKTIPI 939 Query: 984 EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E+ G + +A ++ SK K +++ + E E F Sbjct: 940 EKFDDLKSGTKVEVAGVISSKNIKLSKRNEEFANFKLEDRTGEIECVAF 988 >gi|297545038|ref|YP_003677340.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842813|gb|ADH61329.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1145 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1056 (37%), Positives = 619/1056 (58%), Gaps = 59/1056 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VHS YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 2 FAHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAHGIKPI 61 Query: 71 IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IGC++ + M+D + N+ +VLL GY+ L+++V+ M ++ Sbjct: 62 IGCEIYVAPRSMRDREYGIDNENY-------HLVLLAKDMVGYKNLMKIVT-MASIEGFY 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 R+ +L+E ++GLI L+ +G + + A++ L + +FG Y+ Sbjct: 114 YKPRVDKEFLKE-HSKGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ + ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +D Sbjct: 173 LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLDKKDAKAHEVLLCIQTGKTIDDED 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R D YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 233 RMSFPTDEFYLKSPEEMENLFSYCKEAIENTEKIASMCNVEFEFNKTKLPKYDLPEGVD- 291 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 LRN GL R ++ +RLD+EL+VI +M + YFLIV DF Sbjct: 292 ---SYEYLRNLCYEGLYKRYKNPN-------KEVIERLDYELSVIKQMGYVDYFLIVWDF 341 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC Sbjct: 342 IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + Sbjct: 402 YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFEL 461 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A++ + + D V +L++IS+ LEGL RHASTHAAG+VI PL V Sbjct: 462 GMTID-KALSLNPELKVRYENDERVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ ++ D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D + Sbjct: 521 PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVTIDFDSME 578 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD + Y L++ T G+FQLESSGM+Q + ++P +EDIIA +SLYRPGP+D I Y Sbjct: 579 YDDPKVYELISKGETEGVFQLESSGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYL 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL AD++RRAM KK Sbjct: 639 ANKNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKM 698 Query: 723 EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+++++ FI GA +NG+ ++ A +F+ + FA+Y FNKSHAAAYA Sbjct: 699 DVMEQERKNFIYGMVDDEGNVIVPGALRNGLDESTANKLFDEMLDFANYAFNKSHAAAYA 758 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VI+YQTA++K +YPVEF+AA + +DN++KI + ++ I+++PP +N F V Sbjct: 759 VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVHVCKKMGIKVLPPDINESDSYFTV 818 Query: 831 GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +++I + L+A+K VG I+ E + F S+ DF R+ +LN++ +ESL+ AG Sbjct: 819 VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946 A FG R QLL D + + + N N ++F + G + LE+F Sbjct: 879 AFSSFGVRRSQLLSVYDKLMENIKKNRNNNINGQISLFGEIEQKHGVEFEFPDLEEFP-- 936 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESV--ATIRGN-NIRL 997 S E+ LG Y SGHPL+ Y + K + K EE + +R N + + Sbjct: 937 -KSRLLSMEKETLGLYISGHPLEEYVEDIPKITNATTLDFKVSEEEMFQPKLRDNQEVVI 995 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A ++ +K+ K T+ + + +VT + E FP Sbjct: 996 AGVISTKKIKFTKSNNMMAFVTIEDLYGTVEVIVFP 1031 >gi|330839090|ref|YP_004413670.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185] gi|329746854|gb|AEC00211.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185] Length = 1131 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1033 (37%), Positives = 602/1033 (58%), Gaps = 32/1033 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+GA + ++ + ++AITD ++ ++F ++A GI+PI Sbjct: 6 FAHLHVHTCYSLLDGASRIPELIARTKELGMDSVAITDHGAMYGVIDFYKEAKKQGIRPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ + + T T + ++LL EGY+ L++LVS + + R Sbjct: 66 IGCEAYLAPESRFDRTEVRGTRYY---HLILLAENDEGYRSLVKLVS-LANTEGMYYKPR 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L++ +GLI L+ +G I +A + AEK + + +FG + ++ +Q H Sbjct: 122 VDKDILRKY-HKGLICLSACVAGEIPQAILRGERERAEKLVEEYIDIFGRENFFLEIQDH 180 Query: 190 RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D + V++LA + LVATN+ ++ +ED EAHDVL+A+ V R R Sbjct: 181 GIPDEKTAFAGVIELAEKFGVGLVATNDIHYVHKEDTEAHDVLLAIQTGKGVHDPTRMRY 240 Query: 249 TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPILPRFIEKECDDIQ 304 + Y+++ EM +F D PEAL NT +IA RC + +H P P E DD Sbjct: 241 AEGEFYMRSPEEMQELFHDHPEALANTQKIAERCKVDFEFGHLHLPNFP-LPEGMTDDAY 299 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LR L +R + A R+RLD+EL++I RM + YFLIV DFI Sbjct: 300 ------LRQLCEENLSLRYEKITPA-------VRERLDYELSIIHRMGYDSYFLIVWDFI 346 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A+ I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD DIDFC Sbjct: 347 KYARGEGIAVGPGRGSAAGSIVAYLLGITNLDPLKYELLFERFLNPERVTMPDIDIDFCY 406 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR+EVI YV+ +YG + VAQIITFG++ AK A+RDVGRAL+M Y+ VDR+ K +P++ Sbjct: 407 IRREEVIDYVKRRYGADHVAQIITFGTMAAKGAIRDVGRALEMTYASVDRVAKAVPSELG 466 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+AD FR RL++ ++ LEGL RH+STHAAG+VI PL+ VP Sbjct: 467 ITLD-RALADSQDFRSIYEESDETKRLIDFARDLEGLPRHSSTHAAGVVIARNPLTDYVP 525 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + V VT+++ +E+ GL+K DFLGL+TLT++ +L + + RGV +D+ +P Sbjct: 526 V--QVSDGTLVTEYDKDHVEELGLLKMDFLGLRTLTVIADALKNIKKSRGVTIDIDTMPL 583 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 +D +T +L T +FQ+ES+GM ++ +QP +D+I V+LYRPGP+ + +V + Sbjct: 584 EDEKTAEMLCRGDTGAVFQMESAGMTNLVKDLQPKNFQDLIPTVALYRPGPLGSGMVTDF 643 Query: 663 -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 ++GK+K+ +HPL++P+LKET GV++YQEQVMQ+ Q+L+ ++L +AD+LRRAMGKK Sbjct: 644 IAGRHGKKKVTYLHPLLEPILKETFGVVLYQEQVMQVVQVLANFTLGQADILRRAMGKKK 703 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E + Q+E ++ G +NGI +A IF+LL FADYGFNKSH+AAYA++++QTA++K Sbjct: 704 HEVLMSQRETYMKGTRENGIDDALAEKIFDLLTHFADYGFNKSHSAAYALVAWQTAYLKA 763 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP EF+AA +T MD +K+ + + R+ I+I+PP VN +F V I + LAA Sbjct: 764 HYPQEFMAAMLTSIMDTNDKVGVYIELCRRMGIKILPPDVNASEANFSVDGAAIRFGLAA 823 Query: 842 IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 ++ VG + + + F SL DFC+RVD + N+RVLESL+ GA D G R Q Sbjct: 824 VRNVGEAAIKSLAAVREEGGAFTSLLDFCTRVDMRTANKRVLESLIKCGAFDSLGAHRSQ 883 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 LL L+ + A + + +F ++ + L +S R E+ G Sbjct: 884 LLAVLERVIDVAARKHADAASGQIGLFGEAAMQEAEDVALPDIDEADSVQRLAWEKENTG 943 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 F+ +GHPLD ++ ++ + G +R+ ++ S ++ T+KG + ++ Sbjct: 944 FFITGHPLDRHEKKIKNLVPIGDILDGKKKERQLVRIGGLISSAKRIATKKGDTMCFLEL 1003 Query: 1021 SEPAKEYEANFFP 1033 + E FP Sbjct: 1004 EDYTHSVEVVVFP 1016 >gi|260887140|ref|ZP_05898403.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185] gi|260863202|gb|EEX77702.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185] Length = 1137 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1033 (37%), Positives = 602/1033 (58%), Gaps = 32/1033 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+GA + ++ + ++AITD ++ ++F ++A GI+PI Sbjct: 12 FAHLHVHTCYSLLDGASRIPELIARTKELGMDSVAITDHGAMYGVIDFYKEAKKQGIRPI 71 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ + + T T + ++LL EGY+ L++LVS + + R Sbjct: 72 IGCEAYLAPESRFDRTEVRGTRYY---HLILLAENDEGYRSLVKLVS-LANTEGMYYKPR 127 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L++ +GLI L+ +G I +A + AEK + + +FG + ++ +Q H Sbjct: 128 VDKDILRKY-HKGLICLSACVAGEIPQAILRGERERAEKLVEEYIDIFGRENFFLEIQDH 186 Query: 190 RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D + V++LA + LVATN+ ++ +ED EAHDVL+A+ V R R Sbjct: 187 GIPDEKTAFAGVIELAEKFGVGLVATNDIHYVHKEDTEAHDVLLAIQTGKGVHDPTRMRY 246 Query: 249 TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPILPRFIEKECDDIQ 304 + Y+++ EM +F D PEAL NT +IA RC + +H P P E DD Sbjct: 247 AEGEFYMRSPEEMQELFHDHPEALANTQKIAERCKVDFEFGHLHLPNFP-LPEGMTDDAY 305 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LR L +R + A R+RLD+EL++I RM + YFLIV DFI Sbjct: 306 ------LRQLCEENLSLRYEKITPA-------VRERLDYELSIIHRMGYDSYFLIVWDFI 352 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A+ I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD DIDFC Sbjct: 353 KYARGEGIAVGPGRGSAAGSIVAYLLGITNLDPLKYELLFERFLNPERVTMPDIDIDFCY 412 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR+EVI YV+ +YG + VAQIITFG++ AK A+RDVGRAL+M Y+ VDR+ K +P++ Sbjct: 413 IRREEVIDYVKRRYGADHVAQIITFGTMAAKGAIRDVGRALEMTYASVDRVAKAVPSELG 472 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+AD FR RL++ ++ LEGL RH+STHAAG+VI PL+ VP Sbjct: 473 ITLD-RALADSQDFRSIYEESDETKRLIDFARDLEGLPRHSSTHAAGVVIARNPLTDYVP 531 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + V VT+++ +E+ GL+K DFLGL+TLT++ +L + + RGV +D+ +P Sbjct: 532 V--QVSDGTLVTEYDKDHVEELGLLKMDFLGLRTLTVIADALKNIKKSRGVTIDIDTMPL 589 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 +D +T +L T +FQ+ES+GM ++ +QP +D+I V+LYRPGP+ + +V + Sbjct: 590 EDEKTAEMLCRGDTGAVFQMESAGMTNLVKDLQPKNFQDLIPTVALYRPGPLGSGMVTDF 649 Query: 663 -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 ++GK+K+ +HPL++P+LKET GV++YQEQVMQ+ Q+L+ ++L +AD+LRRAMGKK Sbjct: 650 IAGRHGKKKVTYLHPLLEPILKETFGVVLYQEQVMQVVQVLANFTLGQADILRRAMGKKK 709 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E + Q+E ++ G +NGI +A IF+LL FADYGFNKSH+AAYA++++QTA++K Sbjct: 710 HEVLMSQRETYMKGTRENGIDDALAEKIFDLLTHFADYGFNKSHSAAYALVAWQTAYLKA 769 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP EF+AA +T MD +K+ + + R+ I+I+PP VN +F V I + LAA Sbjct: 770 HYPQEFMAAMLTSIMDTNDKVGVYIELCRRMGIKILPPDVNASEANFSVDGAAIRFGLAA 829 Query: 842 IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 ++ VG + + + F SL DFC+RVD + N+RVLESL+ GA D G R Q Sbjct: 830 VRNVGEAAIKSLAAVREEGGAFTSLLDFCTRVDMRTANKRVLESLIKCGAFDSLGAHRSQ 889 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 LL L+ + A + + +F ++ + L +S R E+ G Sbjct: 890 LLAVLERVIDVAARKHADAASGQIGLFGEAAMQEAEDVALPDIDEADSVQRLAWEKENTG 949 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 F+ +GHPLD ++ ++ + G +R+ ++ S ++ T+KG + ++ Sbjct: 950 FFITGHPLDRHEKKIKNLVPIGDILDGKKKERQLVRIGGLISSAKRIATKKGDTMCFLEL 1009 Query: 1021 SEPAKEYEANFFP 1033 + E FP Sbjct: 1010 EDYTHSVEVVVFP 1022 >gi|289578818|ref|YP_003477445.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9] gi|289528531|gb|ADD02883.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9] Length = 1145 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1056 (37%), Positives = 619/1056 (58%), Gaps = 59/1056 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VHS YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 2 FAHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAHGIKPI 61 Query: 71 IGCQLDI---DMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IGC++ + M+D + N+ +VLL GY+ L+++V+ M ++ Sbjct: 62 IGCEIYVAPRSMRDREYGIDNENY-------HLVLLAKDMVGYKNLMKIVT-MASIEGFY 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 R+ +L+E ++GLI L+ +G + + A++ L + +FG Y+ Sbjct: 114 YKPRVDKEFLKE-HSKGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLE 172 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ + ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +D Sbjct: 173 LQDHGILEQQKVNKELIRLSKETGIPLVATNDVHYLDKKDAKAHEVLLCIQTGKTIDDED 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R D YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 233 RMSFPTDEFYLKSPEEMENLFSYCKEAIENTEKIASMCNVEFEFNKTKLPKYDLPEGVD- 291 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 LRN GL R ++ +RLD+EL+VI +M + YFLIV DF Sbjct: 292 ---SYEYLRNLCYEGLYKRYKNPN-------KEVIERLDYELSVIKQMGYVDYFLIVWDF 341 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC Sbjct: 342 IKFAKDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFC 401 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + Sbjct: 402 YERRQEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFEL 461 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A++ + + D V +L++IS+ LEGL RHASTHAAG+VI PL V Sbjct: 462 GMTID-KALSLNPELKVRYENDERVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYV 520 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ ++ D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + +GV +D + Sbjct: 521 PLQKN--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVTIDFDSME 578 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD + Y L++ T G+FQLESSGM+Q + ++P +EDIIA +SLYRPGP+D I Y Sbjct: 579 YDDPKVYELISKGETEGVFQLESSGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYL 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL AD++RRAM KK Sbjct: 639 ANKNHPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKM 698 Query: 723 EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+++++ FI GA +NG+ ++ A +F+ + FA+Y FNKSHAAAYA Sbjct: 699 DVMEQERKNFIYGMVDDEGNVIVPGALRNGLDESTANKLFDEMLDFANYAFNKSHAAAYA 758 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VI+YQTA++K +YPVEF+AA + +DN++KI + ++ I+++PP +N F V Sbjct: 759 VIAYQTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVHVCKKMGIKVLPPDINESDSYFTV 818 Query: 831 GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +++I + L+A+K VG I+ E + F S+ DF R+ +LN++ +ESL+ AG Sbjct: 819 VEDKIRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAG 878 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946 A FG R QLL D + + + N N ++F + G + LE+F Sbjct: 879 AFSSFGVRRSQLLSVYDKLMENIKKNRNNNINGQISLFGEIEQKHGVEFEFPDLEEFP-- 936 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESV--ATIRGN-NIRL 997 S E+ LG Y SGHPL+ Y + K + K EE + +R N + + Sbjct: 937 -KSRLLSMEKETLGLYISGHPLEEYVEDIPKITNATTLDFKVSEEEMFQPKLRDNQEVVI 995 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A ++ +K+ K T+ + + +VT + E FP Sbjct: 996 AGVISTKKIKFTKSNNMMAFVTIEDLYGTVEVIVFP 1031 >gi|51891797|ref|YP_074488.1| DNA polymerase III DnaE [Symbiobacterium thermophilum IAM 14863] gi|51855486|dbj|BAD39644.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] Length = 1252 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1053 (37%), Positives = 590/1053 (56%), Gaps = 69/1053 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +H+ YSLL+GA + + + A A+A+TD LF L F + G++ Sbjct: 29 PEFVHLHLHTEYSLLDGANRIEPLARRAAELGMRAMAMTDHGVLFGVLPFYKAMRNHGVK 88 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+L + + + + G+ P+ + +L GY+ L++LVS Y + Sbjct: 89 PIIGCELYV-APGSRHVKSGGEKPY----HLTVLAENYTGYKNLVKLVSAGYT-EGFYYK 142 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 R+ L L EGLI+L+G +G + + F + A + + ++++FG D ++ LQ Sbjct: 143 PRVDLELLNTY-REGLIVLSGCLAGEVAQKFLAGQPEEARRAIGRYREIFGPDHYFLELQ 201 Query: 188 -----RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 +G +R+ Q LP+VATN++ +L +D DVL+ + + + Sbjct: 202 DLGLPEQQGLNRFLLEQ--------GLPVVATNDAHYLRPQDARTQDVLICIGTNKTIDD 253 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPIL------ 292 +R R+ T + Y+K+ EM F +P ALEN++ IA RC+ L Q+H P Sbjct: 254 PNRMRMGTSELYVKSAEEMYWRFGHVPGALENSLAIAERCNVELPLGQIHLPHYALPPGY 313 Query: 293 --PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 P ++ K C E G R +GA+ +RL+ ELNVI Sbjct: 314 DAPGYLRKLC--------YERIGPRYGG---RPPEGAM----------ERLEHELNVIIS 352 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F+GYFLIV DF+++A+ IPVGPGRGSGA S+ AY L ITD+DPLR+ LLFERFLNP Sbjct: 353 MGFAGYFLIVWDFVEFARSRGIPVGPGRGSGASSLVAYVLGITDVDPLRYGLLFERFLNP 412 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+ MPDFDIDFC +RR EVI YV NKYG E VAQ+ITF ++ A+AA+RDVGRAL M Y Sbjct: 413 ERVDMPDFDIDFCYERRGEVIEYVHNKYGAECVAQVITFNTMAARAAVRDVGRALGMSYG 472 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 +VDR+ KL+P + +L+ + E R + L++ ++ +EG+ R+ S HAA Sbjct: 473 EVDRVAKLLPWGQSLDAALEKTEELRTLYEER---EEIRTLIDTARAVEGMPRNPSVHAA 529 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI PL + VP+Y+ + D VTQF+M +++ GL+K DFLGL+TLT++ ++ F+ Sbjct: 530 GVVITADPLVEHVPLYK-MGDDSIVTQFDMDQLKEIGLLKMDFLGLRTLTVIDHAVKFVR 588 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 Q D+ IP DD ETY ++ TLG+FQ+E+ + L M+P EDIIA +SL Sbjct: 589 QYQPDFDIERIPMDDPETYAMIARGETLGLFQIEAGWVADVLRQMKPTRFEDIIATISLC 648 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+++I Y K + +HP ++P+L ET GV++YQEQ++QIA LL+G SL +A Sbjct: 649 RPGPMEHIPDYIAGKQNPAGVKYLHPDLEPILSETYGVMVYQEQIIQIAHLLAGLSLGQA 708 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRA+ KK +E+M+K F+ + G S +A +++ + +FA+YGFNK HA YA Sbjct: 709 DLLRRAIAKKKREDMEKYGRLFMEALEQRGYSHEVATALYDQMIRFANYGFNKCHATPYA 768 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++YQTA++K H+PV F+AA M M K+ + ++ R+ IQ++PP VNT F Sbjct: 769 KVAYQTAYLKRHHPVAFMAALMNSVMGQEAKLALYIEECRRLGIQVLPPDVNTSFARFVP 828 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I + L A+K +G I+ A + PF SL D C RVD + LNRR LESL+ AG Sbjct: 829 DGRTIRFGLGAVKNIGWNAVDAIVAAREEGGPFTSLRDLCERVDLRPLNRRALESLIMAG 888 Query: 890 ALDCFG------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKITL 940 A D R Q+L++LD I AQ ++++R ++F GT ++ L Sbjct: 889 AFDRVAPPGGRPARRSQMLEALDKILDDAQKLQRHRQAGQISLFDLGVAGPGTAGEE-PL 947 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 E+ VLGFY SGHPL Y+ L G G + + M Sbjct: 948 PDIPEFPPQRLLAMEKEVLGFYVSGHPLRQYQAALAAHGCLPVAALPEQRDGARVAVGGM 1007 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V +Q TR G+ + ++T + + E FP Sbjct: 1008 VAGLKQVTTRSGANMAFLTLEDQTGQVEVVVFP 1040 >gi|260439212|ref|ZP_05793028.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876] gi|292808227|gb|EFF67432.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876] Length = 1155 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1060 (37%), Positives = 602/1060 (56%), Gaps = 66/1060 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + I + ++AITD ++ ++F + A GI+P Sbjct: 2 SFTHLHVHTEYSLLDGSGKIEEITARAKELGMDSLAITDHGVMYGVIDFYRAARNVGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI--------VLLVSTAEGYQRLIELVSRMYL 121 I+GC++ + + F P I +LL GY L+++VS+ ++ Sbjct: 62 ILGCEVYV----------APGSRFEKEPGISDDRYYHLILLAENNTGYANLMKIVSKGFV 111 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD- 180 D R+ L+E +EG+I L+ +G + + N + A K L ++ +FG Sbjct: 112 -DGFYYKPRVDYEVLEEY-SEGIICLSACLAGEVQKLLARNLYEEACKAALKYEAIFGKG 169 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 ++ LQ H + +V+++ + LVATN+ + E+D EAHD+L+ + Sbjct: 170 NYFLELQDHGIPTQKLVNRLLVRMSRELNIELVATNDVHYTYEDDAEAHDILLCIQTGKK 229 Query: 240 VSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 V+ +DR R +YLK+ EM +FS P+AL+NT +IA+RC+ ++ LP++ Sbjct: 230 VNDEDRMRYEGGQYYLKSEEEMRELFSYAPQALDNTHKIAKRCNVEIEFGVTKLPKY--- 286 Query: 299 ECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 D+ + E+ L + + GL R G A + +RLD+EL+VI +M + Y Sbjct: 287 ---DVPEGFTSESYLEHLCMEGLVKRY-------GERAAELEERLDYELSVIKKMGYVDY 336 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFI +AK N I VGPGRGS AGS+ AY L ITDIDP++++L+FERFLNP+R+SMP Sbjct: 337 FLIVWDFINYAKSNGIAVGPGRGSAAGSIVAYCLEITDIDPIKYNLIFERFLNPERVSMP 396 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D DIDFC +RR EVI YV KYG +RV QI+TFG+L AK ++DVGR L MPYS D L Sbjct: 397 DIDIDFCYERRPEVIDYVMKKYGKDRVVQIVTFGTLAAKGVIKDVGRVLDMPYSVTDSLS 456 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 K+IPN+ + +A+ ++ FR +P V L++I ++LEGL RH S HAAG+VIG Sbjct: 457 KMIPNEIGMTLD-KALNANNEFRTRYETEPEVKYLIDICKRLEGLPRHTSMHAAGVVIGS 515 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 RPL + VP+ R TQF M IE+ GL+K DFLGL+TLT++Q + + +RG V Sbjct: 516 RPLDEFVPLSR-ASDGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQDAERLINKRGDVS 574 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 D+S I ++D ++ T G+FQLES+GM+ ++ ++PD IED+IA +SLYRPGP+ Sbjct: 575 FDISKIDYNDRNVLEMIGQGKTEGVFQLESTGMKNFMKELKPDGIEDLIAGISLYRPGPM 634 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I Y KN K I ++P+LKET G I+YQEQVMQI + L+GY+L +D++RR Sbjct: 635 DFIPQYIAGKNDKTSITYACKELEPILKETYGCIVYQEQVMQIVRDLAGYTLGRSDLVRR 694 Query: 716 AMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AM KK + M+K++ FI +G GI +++A +I++ + FA Y FNKSHAA Sbjct: 695 AMSKKKQAVMEKERHNFIYGNEEENVAGCIAKGIDESVASHIYDTMMDFAKYAFNKSHAA 754 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 YA ++++TA++K +YPVEF+AA MT +DN K+ ++ R I+I+PP +N Sbjct: 755 CYAFVAFRTAYLKYYYPVEFMAALMTSVLDNTTKVAQYIVTCRNMGIEILPPDINEGEGT 814 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F D+ I Y L+AIK +G I+E A+ F ++DF SR+ K++N+R +ES Sbjct: 815 FTAASDSSIRYGLSAIKSLGRPVIEAIVEERANGGRFKDIKDFISRLSGKEVNKRTVESF 874 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLE 941 + +GA D FG +R Q++ +I K + ++F EK D+IT+ Sbjct: 875 IKSGAFDSFGLTRKQMMLVYGDIMDKVSSERKTEISGQMSLFDMFAPDEK---PDEITIP 931 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIRGNN 994 S E+ VLG Y SGHPLD Y+ +L K I E + + + Sbjct: 932 DVGEYTKSELLAMEKEVLGIYASGHPLDEYEGLLNKNVTCTTADFIPDDETGMPKVNDDE 991 Query: 995 -IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+ K TR+G + ++ + E FP Sbjct: 992 RVIVGGMIAECSVKNTRQGQNMAFLKLEDRVGTVEVIVFP 1031 >gi|86153288|ref|ZP_01071492.1| DNA polymerase III, alpha subunit subfamily, putative [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613428|ref|YP_001000414.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni 81-176] gi|85843014|gb|EAQ60225.1| DNA polymerase III, alpha subunit subfamily, putative [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249433|gb|EAQ72393.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 1200 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1001 (39%), Positives = 591/1001 (59%), Gaps = 55/1001 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + I EE E N + GLE RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ E+F V + E+ +LG Y SGHPLD + Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989 >gi|224373354|ref|YP_002607726.1| DNA polymerase III subunit alpha [Nautilia profundicola AmH] gi|223588342|gb|ACM92078.1| DNA polymerase III alpha subunit [Nautilia profundicola AmH] Length = 1132 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1042 (37%), Positives = 601/1042 (57%), Gaps = 66/1042 (6%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 +HS YSLL + + ++ K A+AIT+ +N+FSA+EF + A I+PIIG Sbjct: 4 FHIHSDYSLLHSTIRIKDLTKKAKEYGFNALAITELDNMFSAIEFYESCRANEIKPIIGS 63 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133 + + N + ++L+ GY L+ L S YL + + Sbjct: 64 DVSVIRDGN-------------IHRLILIAKNKTGYDNLMYLSSISYLYNMRGDKPYLPF 110 Query: 134 SWLQEIGTEGLIMLTGGSSGPI---DRAF---FFNSSQVAE--------KRLLTFKKLFG 179 + + EGL + PI + F FN + + + K +L + Sbjct: 111 EEIVK-NKEGLCFIL-----PILESETGFHLNIFNENNILKGAAGYEKAKEILEIYRQNL 164 Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 + +Y+ + R +R E +++L+ PL+A++N FL++ DY D L + ++ Sbjct: 165 NEVYLEITRDSKEERLIEDDLIKLSNETGTPLLASSNIFFLNKLDYIYKDALECIENNKQ 224 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 R ++Y +++ E IF DLPEA+ENT ++A + + + P P F K Sbjct: 225 FDDLHRRPKVKENYFRSKEEFEEIFKDLPEAVENTDKLAESINLEIPLGNPTPPTF--KF 282 Query: 300 CDDIQKEEENELRN-------KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 D EE ++ N K GLE RL I + H ++YR+RLD+E+++I RMK Sbjct: 283 TKDYAAEEGLDIDNDVEYFEYKCKEGLEERLKH--IPENLH-EEYRKRLDYEIDIIKRMK 339 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GY LIV DF++ AKK IPVGPGRGS AG++ AY+L IT+IDPLR+ LLFERFLNP+R Sbjct: 340 FPGYMLIVWDFVREAKKRKIPVGPGRGSAAGALVAYSLQITNIDPLRYGLLFERFLNPER 399 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D+DFCQ+RR E+I YV+ KYG VAQ+ITFGSL AK LRDV R + YS+ Sbjct: 400 VSMPDIDMDFCQERRGEIIEYVREKYGKVNVAQVITFGSLLAKGVLRDVARIFGIDYSEA 459 Query: 473 DRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 DR KLIP+ ++L+ + + + E DP +RL + LEGL R+ HAAG Sbjct: 460 DRFVKLIPDQLG--ITLEKAKELEPKIVEITEEDPLYNRLYSFGEHLEGLKRNTGMHAAG 517 Query: 532 IVIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 +VI D L + P+YR D D VTQ+++ ++E LIKFDFLGLKTLT++ +++ + Sbjct: 518 VVISDEELWKKSPLYRQDEHDDTIVTQYSLNYLEPVDLIKFDFLGLKTLTVIDRAVKNVK 577 Query: 591 -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 + +++ L+ DD + + L+ + TLG+FQ+ES GM+ + ++P EDIIA+++L Sbjct: 578 FNKNEDINIDLLTLDDPKVFELIQSGHTLGLFQIESDGMQDLAKRLKPTNFEDIIAMLAL 637 Query: 650 YRPGPIDNIVV--YNNRKNGKEKIV----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 YRPGP+D+ ++ Y +RK+G++ + ++ P+L+ T GVI+YQEQVMQI Q + Sbjct: 638 YRPGPMDSGMLDDYIDRKHGRKPVSYFFDEFEEVLKPILEPTYGVIVYQEQVMQIVQAIG 697 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 G+SL E+D++RRAMGKK + M K E F A + G S A ++FEL+ KFA YGFNK Sbjct: 698 GFSLGESDIIRRAMGKKKFDLMKKYAEEFAQRAQQRGFSYDNAKSLFELIEKFAGYGFNK 757 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAYA+I+YQTA++KT+YP EFL+A +T E +N +KI K+ ++A+ I+++PP+VN Sbjct: 758 SHSAAYAMITYQTAYLKTYYPTEFLSALLTYEAENTDKIAKYIEEAKVLGIEVLPPNVNK 817 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 +F +++I + L+AIKGVG+ I+ A++P++SLEDF +VD+ K+N++VLE Sbjct: 818 SNAEFTPIEDKILFGLSAIKGVGSKAIESIV---ANRPYESLEDFILKVDTSKVNKKVLE 874 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE--KNRTNKHENIFA--HEKGTFSDKIT 939 L+ AGA+D FG SR +L ++ I ++ + VE KN N ++FA E + + Sbjct: 875 QLIKAGAMDDFGLSRKAMLSRVEEILEFKKRVEEKKNAINHEHSLFADMEENEEIDEHLD 934 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-GYEESVATIRGNNIRLA 998 + + E E + LGFY S HPLD YK R GI V I Sbjct: 935 IPNTVEFDIKTLLEYEYQTLGFYVSAHPLDPYKD--RMKGINYNLSSEVEEIISQEALFV 992 Query: 999 AMVVSKQQKKTRKGSRIGWVTF 1020 + + + + ++KG++ T Sbjct: 993 GKIDAMKVRISKKGNKFAIATL 1014 >gi|168181975|ref|ZP_02616639.1| DNA polymerase III, alpha subunit [Clostridium botulinum Bf] gi|237796833|ref|YP_002864385.1| DNA polymerase III DnaE [Clostridium botulinum Ba4 str. 657] gi|182674724|gb|EDT86685.1| DNA polymerase III, alpha subunit [Clostridium botulinum Bf] gi|229263138|gb|ACQ54171.1| DNA polymerase III, alpha subunit [Clostridium botulinum Ba4 str. 657] Length = 1185 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1079 (36%), Positives = 631/1079 (58%), Gaps = 63/1079 (5%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 Q+ EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++ Sbjct: 4 NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 A GI+PIIGC++ + ++ + Q K +VLLV GY+ L+E+VS+ + Sbjct: 64 AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV 120 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + R+ +L++ +EGLI L+ G + + + AE+ L +K +F + Sbjct: 121 -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEG 178 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ H ++ + ++ +V+++ ++PLVATN+ ++ +EDY++HD+L+ + V Sbjct: 179 FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298 +++R R D YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E+ Sbjct: 239 EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298 Query: 299 ECDDIQKEEENELRNKAVAGLEVR--LAQGAIAKGY-------------HAQDYRQRLDF 343 D + LR GL +R + + I K + A D +RL++ Sbjct: 299 GVDPYEY-----LREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNY 353 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL++I +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+ Sbjct: 354 ELSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLI 413 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+A +RDVGR Sbjct: 414 FERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGR 473 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 A+ PY++VDR+ K+IP ++ +A+ + +EA + V L+++++ LEGL R Sbjct: 474 AMNYPYAEVDRIAKMIPTVLNITIN-KALGLNPELKEAYDNEERVKELIDVARALEGLPR 532 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 H STHAAG+VI +PL VP+ ++ S VTQF M +E+ GL+K DFLGL+TLT+++ Sbjct: 533 HTSTHAAGVVIASQPLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMR 590 Query: 584 KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ + + +G+ +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +ED Sbjct: 591 DAVRIIRENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLED 650 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIA SLYRPGP+ I Y KN KI ++P+L T I+YQEQVMQI + L Sbjct: 651 IIAGNSLYRPGPMAEIPTYIANKNNPSKIKYSTQKLEPILSVTYNCIVYQEQVMQIVRDL 710 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLA 754 +GYS+ +D++RRAM KK + M+++++ FI G K NGI + +A N+F+ + Sbjct: 711 AGYSMGRSDLVRRAMSKKKHDVMEQERKSFIYGNEKEGVKGCINNGIDEKVANNLFDSMM 770 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAAAYAV+S+QTA++ +YP EF+AA + + +++ + A I Sbjct: 771 DFASYAFNKSHAAAYAVVSFQTAYLMRYYPTEFIAAMLNSVKGDSDRVSFYVNFAETLGI 830 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 QI+ P++N +F V DNRI + L A+K VG +I+ + K F L DF ++VD Sbjct: 831 QIIAPNINESYSNFTVKDNRIIFGLTAVKNVGERGIDNIVLSREQKGKFIDLSDFFNKVD 890 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAH 929 + +N+R++ESL+ GA DC R ++L + +D IQK + + + N +I + Sbjct: 891 TSIINKRLVESLIKTGAFDCLNVYRSKMLAVFEKIMDGIQKQKRSNIEGQVNLFMDIMDN 950 Query: 930 EKGTFSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR------------ 976 ++ + K +++F + + E+ + G YFSGHPL+ Y+ L+ Sbjct: 951 KESSMDIKYPNIKEF---DKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIT 1007 Query: 977 KMGIKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K ++G +++ +I+ G+ + + M+ +K TR + ++ + E FP Sbjct: 1008 KESLEGNLVDTMNSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|220909694|ref|YP_002485005.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7425] gi|219866305|gb|ACL46644.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7425] Length = 1162 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1056 (37%), Positives = 611/1056 (57%), Gaps = 52/1056 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++ + PAIA+TD ++ A+E + ++P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPELIGRAQELGMPAIALTDHGVMYGAVELLKTCRGKSVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128 IIG ++ + D +T Q + P V+L GY+ L++L S L QGK Sbjct: 62 IIGNEMYVINGD---ITKQERRPRY---HQVVLAKNNTGYKNLVKLTSISNLKGVQGKGI 115 Query: 129 V-RICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 R C++ +E+ T EGLI+ + G I +A ++A + +K LF D Y+ Sbjct: 116 FSRPCIN--KELLTQYHEGLIVTSACLGGEIPQAIMQGKPEIARRVAQWYKDLFKDDFYL 173 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H DR ++V+++ + ++ATN+S F+S D EAHD L+ + ++++ Sbjct: 174 EIQDHGSQEDRVVNVELVRISQELGIKIIATNDSHFISCYDVEAHDALLCIQTGKLITED 233 Query: 244 DRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILPRFIE 297 R R + YLK+ EM +F D LPE A+ NT+E+A + P P F Sbjct: 234 KRLRYSGTEYLKSAEEMALLFRDHLPEEVIKQAITNTLEVAEKIEPYDIFREPQSPHFPV 293 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E L + A GL R + + + DYR+RL++EL ++ +M FS YF Sbjct: 294 PAG----HTAETYLEDVAWQGLLKRCNKNS--RSEIEPDYRERLEYELKMLQKMGFSTYF 347 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+V D+I++A+ + IPVGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R SMPD Sbjct: 348 LVVWDYIKYARDHGIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPD 407 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D DFC DRRDEVI+YV KYG +RVAQIITF + +KA L+DV R L +PY + DR+ K Sbjct: 408 IDTDFCIDRRDEVIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAK 467 Query: 478 LIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 +IP P L+ + D+ F+E DP+V ++++ ++EG + HAAG+V Sbjct: 468 MIPVSRGKPAKLKVMISDATPAPEFKEKYDKDPNVRHWIDMAIRIEGTNKTYGVHAAGVV 527 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592 I PL ++VP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT+++K+LD + Q + Sbjct: 528 IASEPLDEIVPLQRNNDGAV-ITQYFMEDLESLGLLKMDFLGLKNLTMIEKTLDLIKQHK 586 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +DL +P DD E+Y LL GIFQLESSGMRQ + ++P +EDI ++++LYRP Sbjct: 587 KTDLDLDRLPLDDAESYKLLARGELEGIFQLESSGMRQVVRDLKPSNLEDISSILALYRP 646 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+D ++ + NRK+G+E I H ++ P+L ET G+++YQEQ+M+IAQ ++GYSL +A Sbjct: 647 GPLDAGLIPKFINRKHGRENIDYPHEILKPILNETYGIMVYQEQIMKIAQDMAGYSLGQA 706 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM K +E F+ GA+KNG+ A +F+ + FA+Y FNKSH+ AY Sbjct: 707 DLLRRAMGKKKVSEMQKHQEIFVEGAAKNGVKSKTAQELFDQMVLFAEYCFNKSHSTAYG 766 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++YQTA++K +YPVE++AA +T + +K++K+ I + PP +N VDF Sbjct: 767 YVTYQTAYLKANYPVEYMAALLTANSGDQDKVQKYIGSCLSMGISVEPPDINRSGVDFTP 826 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I + L+A++ VG I+ A + PF SL D C R+D + +NRR LE+L+ G Sbjct: 827 LEKSILFGLSAVRHVGEGAIADILAARESAGPFQSLADLCDRIDPRTVNRRALEALINCG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------AHEKGTFSDKITLEK 942 A+DC +R QL+ L+ + +++Q K+R N+F +F Sbjct: 887 AMDCLELNRNQLIHDLELVLEWSQSRAKDRAIGQGNLFDMLGGSSTQSTSSFEAAPKAPP 946 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIRGNNIRLAA 999 + + E+ +LGFY S HPL +V K IL + + E+ + +N+ L+A Sbjct: 947 VPDLEQTEKLRLEKELLGFYISNHPLKEVQKTARILAPISLANLED-----QPDNVTLSA 1001 Query: 1000 MVVSKQQKK--TRKGSRIGWVTFSEPAKEYEANFFP 1033 +V+ + KK T+KG + + + EA FP Sbjct: 1002 IVMLTELKKVVTKKGDNMAIAQLEDLTGKAEAVVFP 1037 >gi|72382105|ref|YP_291460.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. NATL2A] gi|72001955|gb|AAZ57757.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. NATL2A] Length = 1172 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1062 (37%), Positives = 614/1062 (57%), Gaps = 58/1062 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV + HS YSLL+GA L ++ + PA+A+TD ++ A+E + AA I+P Sbjct: 2 AFVPIHNHSDYSLLDGASQLPLMVQRAKELGMPALALTDHGVMYGAIELLKLCKAANIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE---GYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P LV A+ GY+ L++L + +L Sbjct: 62 IIGNEMYV-------INGSIDDPQPKKEKRYHLVVVAKNQIGYENLVKLTTLSHLNGVRG 114 Query: 127 QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + R C+ +L + +EGLI T G I +A + VA + +K++ GD Y Sbjct: 115 RGIFSRPCIDKYLFKKYSEGLICSTACLGGEIPQAILKGRNDVAREVAAWYKEVLGDDFY 174 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR S++V+++ ++ ++ATN++ +LS+ D EAHD L+ V ++S Sbjct: 175 LEIQDHGSIEDRIVNSEIVKISEELDIKIIATNDAHYLSKNDIEAHDALICVLTGKLISD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 R R T Y+K+ EM S+F+D + A+ENTV+++ + + +P F Sbjct: 235 HKRLRYTGTEYIKSEDEMRSLFTDHLDKNVINSAIENTVKLSNKVEEYKILGTYKMPNF- 293 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSG 355 D Q E L+ + GL L I+K + Y++RLD+EL VI +M F Sbjct: 294 -PIPDGYQPIE--YLKEITIKGL---LEILDISKFENLPITYKERLDYELKVIEQMGFPT 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D+I++A++ NIPVGPGRGS AGS+ A++L IT+IDP+ LLFERFLNP+R SM Sbjct: 348 YFLVVWDYIRFAREQNIPVGPGRGSAAGSLVAFSLHITNIDPVENGLLFERFLNPERKSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D DFC +RR EVI YV KYG ++VAQIITF + +KA L+DV R L +PY DRL Sbjct: 408 PDIDTDFCIERRGEVIDYVTKKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRL 467 Query: 476 CKLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 KLIP P L A+ + + F E D V + ++++ ++EG + HAAG Sbjct: 468 AKLIPVVRGKPAKLAAMISKESPNKDFYEKYNNDSKVKKWVDMAMRIEGTNKTFGVHAAG 527 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI L LVP+ R+ + +TQ+ M+ IE GL+K DFLGL+ LT+++K++D + + Sbjct: 528 VVIAANSLDNLVPLQRNNDGQI-ITQYFMEDIESLGLLKMDFLGLRNLTMIEKTIDLVEK 586 Query: 592 R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 G ++D +PF D +T+ LL+ GIFQLESSGMRQ ++ ++P +EDI ++++LY Sbjct: 587 SIGKRLDPDSLPFTDEKTFELLSRGDLEGIFQLESSGMRQIVKDLKPSSLEDISSILALY 646 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+D ++ + NRK+GKE I H ++P+L ET G+++YQEQ+M+IAQ L+GYSL Sbjct: 647 RPGPLDAGLIPKFINRKHGKESIDFQHQSLEPILSETYGIMVYQEQIMKIAQDLAGYSLG 706 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 +AD+LRRAMGKK EM + + F+ GA KNG++ IA +F+ + FA+Y FNKSH+ A Sbjct: 707 QADLLRRAMGKKKVSEMQRHRAIFVDGAVKNGVTNVIAEQLFDQMVLFAEYCFNKSHSTA 766 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++YQTA++K HYPV ++AA +T+ + +KI+++ + I +MPP++NT VDF Sbjct: 767 YGAVTYQTAYLKAHYPVAYMAALLTVNAGSADKIQRYISNCNSMGINVMPPNINTSGVDF 826 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 DN I + +A+K +G R I+ + D F SL FC R+ +NRR LE+L+ Sbjct: 827 TPKDNSILFGFSAVKNLGDGAIRKIITSRDEDGQFTSLAQFCDRISLGSVNRRGLEALIH 886 Query: 888 AGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS- 944 +GALDC +R QL+ LD ++A K+RT+ N+F T ++ + +S Sbjct: 887 SGALDCLEKNANRAQLIADLDLTIEWASSRAKDRTSGQGNLFDLSNSTNNESSPTDDYSS 946 Query: 945 ----------VENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIR 991 + + ++ E E +GFY S HPL + +P ++ + + E+ Sbjct: 947 APKAKEVQEYLPSDKLKLEKEH--VGFYLSDHPLKQLSEPAKLIAPISLSSLEDQKDK-- 1002 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + + AM+ ++ TRKG R+ + + EA FP Sbjct: 1003 -SKVSVIAMIPEMREVTTRKGDRMAIIQLEDLTGSCEAVVFP 1043 >gi|167005356|ref|ZP_02271114.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni 81-176] Length = 1169 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1001 (39%), Positives = 591/1001 (59%), Gaps = 55/1001 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + I EE E N + GLE RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ E+F V + E+ +LG Y SGHPLD + Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989 >gi|150019661|ref|YP_001311915.1| DNA polymerase III DnaE [Clostridium beijerinckii NCIMB 8052] gi|149906126|gb|ABR36959.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB 8052] Length = 1191 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1080 (36%), Positives = 615/1080 (56%), Gaps = 73/1080 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+G+ + ++ K +IAITD L+ ++F + A I+PI Sbjct: 6 FCHLHLHTEYSLLDGSGKIGKLMKKAKELGMKSIAITDHGVLYGLVDFYKAAKENDIKPI 65 Query: 71 IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC++ + + ++K ++ + + +VLLV GY+ L+++VS + ++ Sbjct: 66 LGCEVYVVPKSRHIKQPDKENSTY----HLVLLVKNQIGYENLMKIVS-VASIEGFYYKP 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI +L++ +EGLI L+ G + + + A++ LT+K++F Y+ LQ H Sbjct: 121 RIDYEYLRK-HSEGLIALSACLGGEVQSYHLKGNYEKAKETALTYKEIFNGDFYIELQNH 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ R + ++L+ +PLVATN+ ++S+ED +HDVLM + + + R R Sbjct: 180 GMEEQKRVNEENIKLSNETGIPLVATNDVHYISKEDSRSHDVLMCIQTAKTIDDPHRRRY 239 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FS +PEALENT++IA CS+ + H LP+F +E D Sbjct: 240 PSDQFYLKSADEMWDMFSYVPEALENTIKIANECSYEYKFHESKLPKFPLEEGQD----P 295 Query: 308 ENELRNKAVAGLEVRLA---------------QGAIAKGYHAQDYRQRLDFELNVIARMK 352 + LR+ GL R + + +A A++Y RL++EL VI +M Sbjct: 296 YDYLRDTCYKGLIDRYSVFENLRNQNLDYSKIEEVVANYEEAKEYVDRLEYELQVIKQMG 355 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + YFLIV DF++++ ++ IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+R Sbjct: 356 YIDYFLIVWDFVRFSYESGIPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPER 415 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+ +RDVGRA+ Y++V Sbjct: 416 VSMPDIDSDFCYERRQEVIDYVVEKYGASNVSQIITFGTMAARLCIRDVGRAMNYSYAEV 475 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 DR+ K+IP + +A+ + + A D V L+++S+ LEGL RH+STHAAG+ Sbjct: 476 DRIAKMIPTMLGITIE-KALDLNPELKLAYDTDERVKALIDVSKDLEGLPRHSSTHAAGV 534 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 VI +PL + VP+ ++ ++ VTQF M +E+ GL+K DFLGL+TLT++ ++ + + Sbjct: 535 VIASKPLVEYVPLQKN--DEMIVTQFGMNTLEELGLLKMDFLGLRTLTVMNDAVKMIKEN 592 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 RGV VDL I F+D E Y+++ T G+FQLES GM ++ ++PD EDIIA +SLYR Sbjct: 593 RGVDVDLDKIDFEDEEVYNMIGEGNTAGVFQLESPGMTSFMKELKPDSFEDIIAGISLYR 652 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+ I Y K EK+ + ++P+L T G ++YQEQVMQ + L+GYS+ +D Sbjct: 653 PGPMAEIPRYIEGKKNSEKVTYLTKELEPILGVTYGCLVYQEQVMQAVRDLAGYSMGRSD 712 Query: 712 VLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADYG 760 ++RRAM KK + M+++++ FI G +NGIS+ IA IF+ + FA Y Sbjct: 713 MVRRAMSKKKHKVMEEERKNFIHGIVENDEVIVPGCVRNGISEEIANKIFDSMMDFASYA 772 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAAAYAV+ YQTA++ +YPVE +AA + M EK+ + A + IQ++PP+ Sbjct: 773 FNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSIMGISEKVAYYIGIAEELGIQVLPPN 832 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879 +N F V +N+I + LAAIK VGT I++A +K F+SL DF +++D +N+ Sbjct: 833 INESFSKFTVKENKIRFGLAAIKNVGTNVVASIVKAREEKGKFESLVDFINKMDPSSINK 892 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDK 937 R +E L+ AGALD F R ++L + + ++ + ++FA E K + Sbjct: 893 RAVECLIKAGALDDFDVFRSKMLAVHEKLIDNISSDKRRNIDGQISLFASEELKNPEVNY 952 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR--------------------- 976 +++F+ N E+ + G Y +GHPLD Y L+ Sbjct: 953 PNIKEFTKRN---LLAMEKEMTGLYITGHPLDDYAQSLKMQTTNEISKIFLVQETLDDSL 1009 Query: 977 --KMG-IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 MG I + A + + L ++ S QK TR S + ++ + E FP Sbjct: 1010 ESDMGEINMFNRQDALQDNDRVILGGILASVNQKVTRNNSIMAFLKLEDLTGTIEVIVFP 1069 >gi|228903122|ref|ZP_04067258.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 4222] gi|228856531|gb|EEN01055.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 4222] Length = 1108 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1033 (36%), Positives = 611/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL R G + + +RL+ ELNVI+RM FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLRKRY-------GAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAERVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 + +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|30022680|ref|NP_834311.1| DNA polymerase III DnaE [Bacillus cereus ATCC 14579] gi|29898239|gb|AAP11512.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579] Length = 1108 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 ILKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVDRTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + + + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLLEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL R + K H + RLD ELNVI+RM FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKIGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 + +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|238926991|ref|ZP_04658751.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] gi|238885225|gb|EEQ48863.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] Length = 1130 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1041 (36%), Positives = 606/1041 (58%), Gaps = 44/1041 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+GA + ++ + A+A+TD ++ A+ F ++A A GI P Sbjct: 2 AFAHLHVHTEYSLLDGASRIKELVCRTKELGMDAVAMTDHGVMYGAVAFYKEAKAQGIHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + T + ++LL GY+ L++L+S + ++ Sbjct: 62 IIGCEVYLAPRQRQERAEVNGTRYY---HLILLAENECGYRNLVQLIS-LANIEGYYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L+ +GLI L+ +G I +A ++A+ + + +FG D ++ +Q Sbjct: 118 RIDKELLRRF-HKGLIALSACVAGEIPQAVLRGDMELADALVREYSGIFGRDNFFLEIQD 176 Query: 189 HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + ++ ++ LA H + LVATN+ +++ ED E HD+L+ V ++ DR R Sbjct: 177 HGLPEEKKVNRTLRRLAEKHNIGLVATNDVHYVNTEDSEFHDILLCVQTGRTLNDPDRMR 236 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDI 303 + PD+YLK+ EM ++F+D P A+ENT +IA RC ++ P P DD Sbjct: 237 FSGPDYYLKSEEEMTALFADYPGAIENTAKIAERCQVDFTFGELQLPFYPLPGGYTTDD- 295 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR + R + QRLD+EL VI +M ++ YFLIV DF Sbjct: 296 -----DYLRALCTERIPARYPAAG-------NEVHQRLDYELGVIHKMGYASYFLIVWDF 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +A+ + + VGPGRGS AGS+ A+ L IT+IDPLR++LLFERFLNP+R+SMPD DIDF Sbjct: 344 INYARGHGVAVGPGRGSAAGSIVAFLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFD 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 R VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+ +V + KL+P + Sbjct: 404 DINRGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFGEVSTITKLVPAEL 463 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ + + FR D R++++++K+EGL R+ S HAAG+VI PL+ V Sbjct: 464 NITLD-RALKESADFRRRYEEDEEAHRVIDLARKIEGLPRNTSIHAAGVVIAKSPLTSQV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P++ V VT+++ +E GL+K DFLGL+TL+++ +++ + Q GV +++ IP Sbjct: 523 PVW--VSEGTLVTEYDKDDVEALGLLKMDFLGLRTLSIIADAVENIRQSHGVDINMDRIP 580 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 D +T +L T +FQ+ES+GM ++ +QP D+I V+LYRPGP+ + +V Sbjct: 581 LIDEKTSQMLCNGDTGAVFQMESAGMTNLVKELQPKGFVDLIPTVALYRPGPLGSGMVTD 640 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + + +GK+ +V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK Sbjct: 641 FIDGLHGKKDVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKK 700 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 E + QKE F+ G KNGI+ +A +IF+LL FADYGFNKSH+AAY ++++QTA++K Sbjct: 701 KHELLMAQKEIFLQGCEKNGIAAELANHIFDLLTHFADYGFNKSHSAAYGLLAWQTAYLK 760 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEF+A +T MD +KI + Q Q I I+PP +N F + D I + LA Sbjct: 761 AHYPVEFMAGVLTSIMDKTDKIPVYIQLCHQMKINILPPDINASTASFSIEDGAIRFGLA 820 Query: 841 AIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A++ VG +++ A+ F SL +FC+RVD + +N+R +ESL+ GA DC G R Sbjct: 821 AVRNVGEAAIGSMVQVRAEGGKFHSLVNFCARVDMRTMNKRAIESLIKCGAFDCLGRERN 880 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRV 958 QLL SLD + A +++R + +F+ + +I + R E+ Sbjct: 881 QLLYSLDFAMQDAARSQRDRMSGQIGLFSSDTMESVQQIQDFPDVPPTTAEERLMWEKEA 940 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG------NNIRLAAMVVSKQQKKTRKG 1012 GFY +GHPLD Y+ L + + IRG +R+ ++ + ++ T+KG Sbjct: 941 TGFYITGHPLDDYRDTLSSL------LPINDIRGELRKDRQLVRIGGILTNTKRYTTKKG 994 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + + + + E FP Sbjct: 995 DTMLFAEMEDFSGRIEVTVFP 1015 >gi|304438918|ref|ZP_07398841.1| DNA polymerase III alpha subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372584|gb|EFM26167.1| DNA polymerase III alpha subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 1140 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1048 (36%), Positives = 602/1048 (57%), Gaps = 55/1048 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + + K+ +IAITD N+F A++F + G++PI Sbjct: 2 FTHLHVHTEYSLLDGSTRIKELPKKVKELGMDSIAITDHGNMFGAIQFYKACKDEGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + NL + ++ + ++LL +GY+ L+++VS+ ++ D R Sbjct: 62 MGCEVYVS-STNLNVKDRTSKRY----HLILLAENNKGYENLMKIVSKGWV-DGFYYKPR 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L+E +EG+I L+ G + R + A K L ++ +FG D ++ +Q H Sbjct: 116 VDKKVLREY-SEGIIALSACLQGEVQRKILDRDFEAARKAALEYQDIFGKDNFFLEVQNH 174 Query: 190 RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G E+ + + EL PL ATN+ +L + D +AHDVL+ + T++S R + Sbjct: 175 -GIREQLEANIHLRNLSGELGIPLAATNDVHYLEKSDAKAHDVLLCIQTGTILSDGKRMK 233 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D YLK+ EM D +A+ENT EIA+RC+ ++ H LP+F D+ Sbjct: 234 FPSDEFYLKSEDEMKEALPDFVDAIENTYEIAKRCNVTIEFHNYHLPKF------DVPDG 287 Query: 307 EENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVAD 362 N+ L+ A+ GL + Y D + +R +FELN I M ++ YFLIV D Sbjct: 288 YTNDEYLKELALKGLREK---------YENLDEKIMERFNFELNTIISMGYTDYFLIVWD 338 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI +AK+N I VGPGRGS AGS+ +Y L I D+DPLRF LLFERFLNP+R+SMPD DIDF Sbjct: 339 FINYAKENGIMVGPGRGSAAGSIISYGLGIIDVDPLRFDLLFERFLNPERVSMPDIDIDF 398 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR+EVI YV KYG + VAQI TFG++ A+ A+RDVGR + + YS+VD++ K+IP + Sbjct: 399 CYERREEVIEYVNRKYGKDHVAQIATFGTMAARGAIRDVGRVMDISYSKVDQVAKMIPQE 458 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 ++ +AI R A DP V +++ + K+EGL RH STHAAG+VI +R ++ Sbjct: 459 LNITIN-KAIEMSEDLRNAMRDDPQVKGIIDTALKVEGLPRHMSTHAAGVVISNRDVTDY 517 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+ R + +TQFNM +E+ GL+K DFLGL+TLT+++ +++ + + G+++D Sbjct: 518 VPLAR--TDEQLLTQFNMTELEELGLLKMDFLGLRTLTVIRDAVNMVKENYGIEIDFKDQ 575 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 FDD E L TLGIFQ ESSGMR L+ ++ D ED++A +L+RPGP+ I + Sbjct: 576 GFDDKEVIDLFKHANTLGIFQFESSGMRAFLKELKADAFEDLVAANALFRPGPMSQIPRF 635 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K+ KI IHP ++P+L T G I+YQEQVMQI Q + GYSL AD++RRAM KK Sbjct: 636 IESKHDPSKISYIHPSLEPILNVTYGCIVYQEQVMQIVQQIGGYSLGRADLVRRAMSKKK 695 Query: 722 KEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 M++++ F I GA NG+ + A I++L+ FA+Y FNKSH+ AY Sbjct: 696 MSVMEEERNNFIYGLKDEEGNVLIKGALANGVDEKSANEIYDLMIDFANYAFNKSHSVAY 755 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 +V++Y+TA++K +YP EF+A+ ++ M + +++ + ++ ++ NI+++PPSVN F Sbjct: 756 SVVAYRTAFLKRYYPKEFMASQISSFMSSPKQVALYAEELKRLNIKLLPPSVNESRNKFT 815 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR---VDSKKLNRRVLESLV 886 V ++ + + L A+K VG I+EA +K F S+ DF R V+S +N+R LESL+ Sbjct: 816 VEEDAVRFGLKAVKNVGDNFIDAIVEARKEKKFTSMTDFIRRVVEVNSSAINKRALESLI 875 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R + L + I + Q KN ++F +EK D L+ F Sbjct: 876 KAGAFDFLPGNRAKYLAVYERILESVQSGIKNNVKGQFSMF-NEKTDEDDLPNLKDF--- 931 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQ 1005 + + E +LG Y SGHPL+ Y+ + + + G N++++ ++ K+ Sbjct: 932 DEKTKLNMEYEMLGIYASGHPLNPYRNAIENNSSTNTSKIFENPVNGQNVKISGIIKQKR 991 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ + + T + E FP Sbjct: 992 NLITKNNKMMCFATLEDFFGTIELIVFP 1019 >gi|15639656|ref|NP_219106.1| DNA polymerase III subunit alpha [Treponema pallidum subsp. pallidum str. Nichols] gi|189025894|ref|YP_001933666.1| DNA polymerase III subunit alpha [Treponema pallidum subsp. pallidum SS14] gi|6014994|sp|O83675|DPO3A_TREPA RecName: Full=DNA polymerase III subunit alpha gi|3322971|gb|AAC26567.1| DNA polymerase III, subunit alpha (dnaE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018469|gb|ACD71087.1| DNA polymerase III, subunit alpha [Treponema pallidum subsp. pallidum SS14] gi|291060035|gb|ADD72770.1| DNA polymerase III subunit alpha [Treponema pallidum subsp. pallidum str. Chicago] Length = 1170 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/978 (39%), Positives = 574/978 (58%), Gaps = 34/978 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQ 68 SFVHL VHS+YSLL+GA SL ++ + Q A+A+TD N+F AL F QK C+A GI+ Sbjct: 5 SFVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHF-QKVCSAEGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQ--GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIGC+L + + + G+ + +++L GY+ L+ L S+ Y+ +G Sbjct: 64 AIIGCELYVAPESRFDRSEHTIGRRYY----HLIVLAKNETGYRNLMVLSSKAYI--EGM 117 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 L EGLI L+ +G + + AE+ ++ LFG D ++ Sbjct: 118 YYKPRVDDELLAQHAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYFIE 177 Query: 186 LQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H G D ++ +++LA +PLV TN+ + +ED A D+L+ + S Sbjct: 178 VQDH-GLDEEKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSDP 236 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECD 301 +R + D YLK+ +M +F PE + NTV IA+RC+ + P+LP + I E Sbjct: 237 NRLKFKTDEFYLKSSEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHEFS 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 +E+ +R+ GL R A +++ + R D+EL+VI RM F GYFLIV Sbjct: 297 S----KEHYIRHLVHRGLYDRYA-------VVSEEIKARADYELDVIVRMDFVGYFLIVW 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK+++IPVGPGRGSGA S+ AYAL ITDIDPLR+ LLFERF+NP+R+SMPDFDID Sbjct: 346 DFITWAKEHDIPVGPGRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDID 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR EVI YV+ +YG++ V QIITFG+L+ KAA+RDVGR L +P S+V + KL+P+ Sbjct: 406 FCFERRQEVIEYVRARYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPD 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP ++ + + + + + +P L +I++KLE R+ S HAAGIVIG L+ Sbjct: 466 DPK--LTFKKAYESEQLAQMK-QEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTD 522 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDL 598 VP+Y+D ++ TQF M IE GL+K DFLGLKTLTL+Q++ + + ++G K + Sbjct: 523 YVPLYKDSKTGKISTQFGMDLIEDCGLVKMDFLGLKTLTLIQRTQNLVRRKGGKYTTFSI 582 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S I D T+ +L + +FQ ES GM+ L+ +P +ED+IAL +LYRPGP+ I Sbjct: 583 SDISDQDPTTFSMLAEGKSAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMAFI 642 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y K KI P ++ +L ET GVI+YQEQVMQ+AQ ++G+SL EAD+LRRAMG Sbjct: 643 DQYIESKRDPGKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILRRAMG 702 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK M ++K+ F A K G K A NIFE+L FA YGFNKSHA AY+V++YQTA+ Sbjct: 703 KKKLAVMQEKKKEFAERAEKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAYQTAF 762 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K ++P EF+AA+++ E+++ EK+ + +A + + I P VN F V + I Y Sbjct: 763 LKANFPAEFMAANLSNEINSAEKLPLYMAEAEKMGLSIQKPDVNASEPYFSVCEGCIVYG 822 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L IKG+G A + E + P+ S + RV + LN++ E ++ AG D FG + Sbjct: 823 LLGIKGLGEQVAFDVFDERIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFDRFGVT 882 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R L LD+ KY + +++ ++F + T + R E+ Sbjct: 883 RASLTAHLDDAMKYVARKKAVTSSRQASLFDETDLGECSEYTFPVMEEWSQRERLRIEKE 942 Query: 958 VLGFYFSGHPLDVYKPIL 975 ++G+Y SGHPLD Y+ ++ Sbjct: 943 LMGYYISGHPLDEYRSVI 960 >gi|324328496|gb|ADY23756.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar finitimus YBT-020] Length = 1108 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + P+P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKPYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGN-FYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPANET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDTYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIMQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|254520595|ref|ZP_05132651.1| DNA polymerase III DnaE [Clostridium sp. 7_2_43FAA] gi|226914344|gb|EEH99545.1| DNA polymerase III DnaE [Clostridium sp. 7_2_43FAA] Length = 1187 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/1012 (37%), Positives = 588/1012 (58%), Gaps = 67/1012 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F HL +H+ YSLL+G+ + I+ + +IAITD ++ + F ++A GI Sbjct: 5 SKKFTHLHLHTEYSLLDGSGKIKKIISRAKELGMDSIAITDHGVMYGCVSFYKEAIEQGI 64 Query: 68 QPIIGCQ-------LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 +PI+GC+ +DI + D T+ +VLLV EGY+ L+E+VS+ Sbjct: 65 KPILGCEIYVAAKSMDIKINDKENSTHH----------LVLLVKNEEGYKNLMEIVSQAS 114 Query: 121 LLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +G R+ +L+ ++GLI L+ G + ++ + A++ L +K +F Sbjct: 115 I--RGFYYKPRVDHDFLRS-HSDGLIALSACLGGEVQSWHLKDNYEKAKEVALLYKDIFK 171 Query: 180 DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D Y+ +Q H G D R+ ++L+ +PL+ATN+ ++++ D E+HDVLM + Sbjct: 172 DGFYLEIQNH-GMDEQRKVIEGNIKLSKETGIPLIATNDVHYINQRDSESHDVLMCIQTG 230 Query: 238 TVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + +R R D YLK+ +M +FS +PEALENT++IA C+F + H LP+F Sbjct: 231 KTIDDPNRRRYPSDQFYLKSPEQMWDMFSHIPEALENTIKIAEECNFDYEFHVSKLPKFP 290 Query: 297 EKECDDIQKEEENELRNKAVAGLEVR-----------LAQGAIAKGYHAQD----YRQRL 341 E E L+N +GL R L + Y + Y +RL Sbjct: 291 VPE----GIEPYEYLKNVCYSGLIERYEVFKEFLNRPLNVEELVDYYKTNEEACGYIERL 346 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 ++EL+VI +M + YFLI DFI+++ +N IP GPGRGS AGS+ AY L IT IDP+++S Sbjct: 347 EYELSVIKQMGYVDYFLITWDFIRFSNENGIPTGPGRGSAAGSIVAYTLGITKIDPIKYS 406 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFC +RR EVI YV KYG V+QIITFG++ +A +RDV Sbjct: 407 LLFERFLNPERVSMPDIDSDFCYERRQEVIDYVVEKYGINNVSQIITFGTMAPRACIRDV 466 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 GRA+ Y++VDR+ K+IP + +A+ + + A + V L+++S+ LEGL Sbjct: 467 GRAMNYSYAEVDRIAKMIPTMLGITID-KALEINPELKAAYNNEERVKALIDVSKDLEGL 525 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 RH+STHAAG+VI +PL + VP+ R+ D V QF+M +E+ GL+K DFLGL+TLT+ Sbjct: 526 PRHSSTHAAGVVIASKPLVEYVPLQRN--EDSIVAQFDMTTLEELGLLKMDFLGLRTLTV 583 Query: 582 LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + + +G+ ++L I F+D + Y+++ T G+FQLES GM ++ ++PDC+ Sbjct: 584 MNDAVKMIKENQGIDINLDKINFEDKDVYNMIGEGKTAGVFQLESPGMTSFMKELKPDCL 643 Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 EDIIA +SLYRPGP+ I Y K +K+ P ++ +L T GV++YQEQVM+I + Sbjct: 644 EDIIAGISLYRPGPMGEIPRYVECKQNPDKVEYEVPELEDILNVTYGVMVYQEQVMEIVR 703 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI------------SGASKNGISKTIAVN 748 L+GYS+ +D++RRAM KK + M+++++ FI G +NGIS+ A Sbjct: 704 KLAGYSMGRSDLVRRAMSKKKHKVMEEERKNFIYGVVDDNGNIEVPGCKRNGISEEAANK 763 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 IF+ + FA Y FNKSHAAAYAVI YQTA++ +YPVE +AA + M EK+ + Sbjct: 764 IFDQMMDFASYAFNKSHAAAYAVIGYQTAYLMKYYPVETIAAMLNSVMGTSEKVAHYINF 823 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867 A IQ++PP +N F V ++I + LAAIK VG I+E+ +K F+SL D Sbjct: 824 AESLGIQVLPPDINESYSKFTVKGDKIIFGLAAIKNVGYNVVETIVESRNNKGEFESLMD 883 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +++D +N+R +ESL+ AGALDCF R +LL + + K + ++F Sbjct: 884 FINKIDLSSVNKRAIESLIKAGALDCFDVFRSKLLAVYEKLMDSVSSERKRNIDGQISLF 943 Query: 928 AHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 E+ +I +++F+ +N E+ + G Y SGHPLD Y L+ Sbjct: 944 GMEEEIELPEINYPNIKEFAKKNI---LAMEKEMTGLYLSGHPLDEYADSLK 992 >gi|228954873|ref|ZP_04116893.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804862|gb|EEM51461.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1105 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1032 (36%), Positives = 611/1032 (59%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+I Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 224 DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR GL R + K H + RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 281 ---LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 808 GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ VLGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|256004510|ref|ZP_05429489.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360] gi|255991515|gb|EEU01618.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360] gi|316940028|gb|ADU74062.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 1313] Length = 1181 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1076 (36%), Positives = 622/1076 (57%), Gaps = 78/1076 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA + +++ + +IAITD ++ ++F ++A GI+PI Sbjct: 5 FVHLHVHTEYSLLDGANRIKDLIRRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC+ I + QG + + P +VLL GY+ L+++VS + + Sbjct: 65 LGCE--IYTAKGSRFDKQGG--WDSDPGHMVLLAKNNTGYKNLMKIVS-IGFTEGFYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ + L++ +EGLI ++ SG I +A N+ + A++ L +FG D Y+ LQ Sbjct: 120 RVDMEVLEKY-SEGLIAMSACLSGDIPKAILNNNYEKAKELALKLNSIFGQDNFYLELQM 178 Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + G + Q+++L+ +PLVATN++ +L ED AH++L+ + ++ +DR Sbjct: 179 N-GIEEQNIVNQQLIKLSRETGIPLVATNDAHYLRREDARAHEILLCIQTGKSINDEDRM 237 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + D Y+K+ EM+S+F ++PEA+ NTV IA C+ L+ + LP+F + D K Sbjct: 238 RFSSDDFYIKSPEEMISLFRNIPEAISNTVRIADMCNVELEFNKLHLPKF---DVPD-GK 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR G E R+ K ++ RL++EL+VI +M + YFLIV+DFI+ Sbjct: 294 DPFEYLRALCYEGFE-RI----YGKDNRDEEKINRLEYELSVIKQMGYVDYFLIVSDFIR 348 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK+ I VGPGRGS AGS AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDFC + Sbjct: 349 YAKEKGIMVGPGRGSAAGSFVAYCLGITNIDPLKYNLLFERFLNPERISMPDIDIDFCFE 408 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG +RVAQIITFG++ A+A +RDVGRAL + Y +VD + K+IP Sbjct: 409 RRQEVIDYVVEKYGKDRVAQIITFGTMAARAVIRDVGRALDISYGEVDAIAKMIPFQIGM 468 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + R+ D V L++ ++ LEG+ RHASTHAAG+VI PL++ VP+ Sbjct: 469 SIE-KAMELNPELRQRYNDDERVKELIDTAKLLEGMPRHASTHAAGVVISREPLTEYVPL 527 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 R D TQF M +E+ GL+K DFLGL+TLT+++ ++ + + + V + + D Sbjct: 528 QRS--EDSITTQFPMGILEELGLLKMDFLGLRTLTVIRDAVALIKKNHNIDVKIDELQMD 585 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + L+ T G+FQLES+GM Q ++ +QP +EDIIA +SLYRPGP+D I Y Sbjct: 586 DPNVFKLIGEGRTAGVFQLESAGMTQFMKELQPASLEDIIAGISLYRPGPMDQIPRYLRN 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN E + HPL++ +L T G ++YQEQVMQI + L+GYS+ +D++RRAM KK Sbjct: 646 KNNPELVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMAKKKVSI 705 Query: 725 MDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 M+++++ FI GA +NG+ + A IF+ + FA Y FNKSHAAAYAVI Sbjct: 706 MEQERKNFIYGIDDDNGNIIVKGAVRNGVDEETANKIFDEMMDFASYAFNKSHAAAYAVI 765 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTAW+K +YPVEF+AA + M + +KI ++ + R+ I+++PP +N V F V + Sbjct: 766 AYQTAWLKCYYPVEFIAALLNSFMGSSDKISQYVHECRKLGIEVLPPDINESDVRFTVVN 825 Query: 833 NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +I + LAA+K VG R I+ E + + + S +F RVD K +N+R +ESL+ +GA Sbjct: 826 GKIRFGLAAVKNVGENAVRSIIDERNINGNYKSFRNFLERVDGKDVNKRCIESLIKSGAF 885 Query: 892 DCFGYSRMQLLQSLDNIQK------------------YAQWVEKNRTNKHENIFAHEKGT 933 D G R +L+ + + + + A E + ++ ++ ++ Sbjct: 886 DSMGVYRSRLMNAYEKMMEGISSQRKKSMEGQLSIFDMALNTEDGKKDEKHQLYPEDEDI 945 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK-------PILRKMGIKGYEES 986 + D + ++S + E+ +LG Y SGHPL ++ + K + +E+ Sbjct: 946 YPD---IPEYS---QKILLSMEKEMLGLYISGHPLSEFEKEFSEVVTLYSKDMVSDADEN 999 Query: 987 --VATIRGN-------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V T+ GN + + ++ S++ K T+ + + +VT + E FP Sbjct: 1000 GEVITVEGNKGLKDGMTVTVGGIITSRKTKTTKNNNLMAFVTLEDLYGTMEIIVFP 1055 >gi|218899758|ref|YP_002448169.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842] gi|218545476|gb|ACK97870.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842] Length = 1108 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1033 (36%), Positives = 611/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL R G + + +RL+ ELNVI+RM FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLRKRY-------GAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 + +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|205355560|ref|ZP_03222331.1| DNA polymerase III alpha chain [Campylobacter jejuni subsp. jejuni CG8421] gi|205346794|gb|EDZ33426.1| DNA polymerase III alpha chain [Campylobacter jejuni subsp. jejuni CG8421] Length = 1200 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1001 (39%), Positives = 591/1001 (59%), Gaps = 55/1001 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + I EE E N + GLE RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGLEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ E+F V + E+ +LG Y SGHPLD + Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989 >gi|160931723|ref|ZP_02079117.1| hypothetical protein CLOLEP_00555 [Clostridium leptum DSM 753] gi|156869368|gb|EDO62740.1| hypothetical protein CLOLEP_00555 [Clostridium leptum DSM 753] Length = 1203 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1049 (37%), Positives = 586/1049 (55%), Gaps = 45/1049 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+GA +N ++D + ++AITD +++ ++F + A A GI P Sbjct: 51 GFVHLHLHTEYSLLDGACRINELIDTAVSQGAASVAITDHGSMYGVVDFYKAAKAKGIHP 110 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + K T++ +VLL GYQ L +VS ++ G + Sbjct: 111 IIGCEVYVSPR---KHTDKIHEFDSENRHLVLLCKNNTGYQNLAAMVSEAWI--NGFYNK 165 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 + E +EGLI L+ +G I RA A+++ L + ++FG Y+ LQ Sbjct: 166 PRVDDEMLETRSEGLIALSACLAGDIPRALVRGDYDAAKEKALKYNRIFGQGNFYLELQD 225 Query: 189 HRGYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G ++ + +A + E +PLV TN+ ++ +ED + H VL+ + + + + Sbjct: 226 H-GIREQKQIAPMLIALSQETGIPLVVTNDCHYIHKEDSKMHQVLLCIQTNHTLEDDNNL 284 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 D Y K EM S+F +PEA +NTV+IA C+ + LP F E D Q Sbjct: 285 EFGSDEFYFKTEEEMRSLFPQVPEACDNTVKIAEMCNVEFEFGNTKLPHF---EVPDGQD 341 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E RN+ G E A R+RL++ELN I M + Y+LIV DFI+ Sbjct: 342 HFEY-FRNQCYEGFEKYYGTNA------DPSVRERLEYELNTIKTMGYVDYYLIVHDFIR 394 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFDIDFC + Sbjct: 395 YAKSVGIPVGPGRGSGAGSIAAYCIGITGIDPIKYNLLFERFLNPERVSMPDFDIDFCYE 454 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG + VAQIITFG++ A+ A+RDVGRA+ MPY+ VD + KL+P + Sbjct: 455 RRQEVIDYVVRKYGADHVAQIITFGTMAARGAIRDVGRAMAMPYAAVDVIAKLVPMELG- 513 Query: 486 PVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 ++L+ S +AR ADP L+++++K+EG+ R ASTHAAG+VI ++P+S VP Sbjct: 514 -ITLERALKVSPELKARYDADPQTRELIDMARKVEGMPRQASTHAAGVVITEQPVSFYVP 572 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + ++ +D VTQ+ M +E+ GL+K DFLGL+TLT+L + + ++ ++ +P D Sbjct: 573 LAKN--NDAVVTQYTMTTLEELGLLKMDFLGLRTLTVLSDAEKMVRRKEPDFSIAHVPDD 630 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D Y +L T G+FQ ES GM+ L + P +ED+IA++SLYRPGP+D+I Y Sbjct: 631 DPAVYRMLAEGSTNGVFQYESGGMKNVLVQLGPQSLEDLIAVISLYRPGPMDSIPKYIEN 690 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ E++ +HPL+ +L T G I+YQEQVMQI + L+GYSL AD++RRAM KK Sbjct: 691 RHHPERVTYLHPLLAGILDVTYGCIVYQEQVMQIFRTLAGYSLGRADIVRRAMSKKKHSV 750 Query: 725 MDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 M+K+++ FI G + G+S+ IA IF + FA Y FNKSHA AYA + Sbjct: 751 MEKERKIFIEGLVGGDGTVEVEGCIRRGVSREIAEKIFAEMESFASYAFNKSHATAYAWV 810 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQTA+MK HYP EF+AA +T +DN K+ + ++ IQ++PP+VN F V Sbjct: 811 SYQTAYMKYHYPKEFMAALLTSVLDNANKVAGYIEECSNMGIQVLPPNVNESGNGFTVTH 870 Query: 833 NRIYYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I + L AI+ +G AR + E + S FC R+ +++NRR LESL+ +GAL Sbjct: 871 GSIRFGLLAIRNLGRGFIARLLEEREQGGKYTSFYQFCKRLHGREMNRRTLESLIKSGAL 930 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D G +R Q+L + + +K + F D+I +S Sbjct: 931 DGLGANRRQMLAVAETVLDNLDAEKKQNLDGQIGFFEAMGQAPRDEIAFPDVEEFPASEL 990 Query: 952 FENEQRVLGFYFSGHPL-----DVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSK 1004 E+ + G Y SGHP+ K K+G + + E G N+ L ++ S Sbjct: 991 LSMEKEITGMYLSGHPMAAYAQAAAKLNAAKIGEIAEAHGEYDRYHDGTNVTLLCIINSV 1050 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K T+ S + +V + E FP Sbjct: 1051 RLKTTKNNSTMAFVQIEDLYGGIEMLVFP 1079 >gi|228941783|ref|ZP_04104330.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974708|ref|ZP_04135274.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981302|ref|ZP_04141602.1| DNA polymerase III subunit alpha [Bacillus thuringiensis Bt407] gi|228778502|gb|EEM26769.1| DNA polymerase III subunit alpha [Bacillus thuringiensis Bt407] gi|228785111|gb|EEM33124.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817995|gb|EEM64073.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942388|gb|AEA18284.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar chinensis CT-43] Length = 1108 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1033 (36%), Positives = 611/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--IEKECDDIQKE 306 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTMKIAERCQVEIPFHVNQLPKFPVSSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL R G + + +RL+ ELNVI+RM FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLRKRY-------GAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRLPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 + +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAM-RYKKKVQRAIVYITSVRVIRTKKFQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|262066954|ref|ZP_06026566.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] gi|291379302|gb|EFE86820.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] Length = 1133 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/990 (38%), Positives = 593/990 (59%), Gaps = 45/990 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSLLEG S++N L K ++A+TD N+F A+EF +KA GI+P Sbjct: 4 NFVHLNLHTEYSLLEGVNSIDNFLVKAKELGMNSLAVTDYANMFCAIEFYEKAKKMGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + ++ + ++ LL EGY+ L++L S +Y + + + Sbjct: 64 IIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELYK-KKDNREL 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L+E +GLI L+ G I +A N S+ + + + ++F + Y+ +Q Sbjct: 112 RISKEILKE-HNKGLIALSSSMKGEIGKAILMNFPSEKLDSIVDEYIEIFSKENFYLEIQ 170 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + ++ + L +L LVATNN ++ + YE D+++ + + K+R Sbjct: 171 ANELPENKVINDKFYDLVKEKKLELVATNNVHYVDRDGYELQDIVICIQSGWKLKDKNRK 230 Query: 247 R-VTPDHYLKNRSEMV-SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R V+ + YLK++ EM S+ +A+ENT IA C+ ++ P + E + Sbjct: 231 RAVSKELYLKSKEEMQRSLDEKFHKAIENTNYIASLCNLEIEFGNLQFPYY---EVPNQY 287 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L KA+ ++ I K +D +RL++EL+VI +M +SGYF++V DFI Sbjct: 288 SGMDEYL--KAICYENIK----KIYKENLTKDILERLEYELSVIIKMGYSGYFIVVWDFI 341 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C+ Sbjct: 342 AYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICR 401 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L + ++DRL KL+ + Sbjct: 402 ERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDRLSKLVSSFQT 461 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +L+ + ++ D + +++++S ++E RH STHAAGI+I L + VP Sbjct: 462 LEKTLKENVEVAKL---YTTDIELQKVIDLSIRIENKVRHVSTHAAGILITKEDLDRTVP 518 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 +Y D + + TQ+ MK +E GL+K DFLGLK L+ +Q+++D++ + + + ++L IP Sbjct: 519 IYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDIELYKIPL 578 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 DD + + +L+ + G+FQLES G+R+ ++ ++P+ +EDI+AL++LYRPGP+ + +V + Sbjct: 579 DDKKVFEMLSQGDSTGVFQLESPGIRKIMKRLKPNKLEDIVALLALYRPGPLQSGMVDDF 638 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRAMGKK Sbjct: 639 INRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEADLLRRAMGKKN 698 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 M + +E+FI A +N ++ A IFEL+ KFA YGFNKSH+ AYA+ISY TA++K Sbjct: 699 FAIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAMISYWTAYLKA 758 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP + AA MT E+ + + DA++ I I PP+VNTP F++ ++ I YSLAA Sbjct: 759 HYPAFYFAAIMTSEISETGDVAYYFNDAKEHRISIYPPNVNTPSAYFEIKNDGISYSLAA 818 Query: 842 IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK +G A+ I+E + L++F R +N+R LE+L+ +GALD +R + Sbjct: 819 IKNIGLNLAKKIVEDYEKHGTYTKLDEFMIRNKKNGMNKRALEALILSGALDELEGNRKE 878 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-----SVRFENE 955 S+D + + K + N+F G S T+ KF++ NS + E Sbjct: 879 KFLSIDKVLDFVSKAPKTDEIQQMNLF----GAASK--TINKFALTNSDDFNLDEKMTKE 932 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 + LGFY S HPLD Y+ I+ I E Sbjct: 933 KEFLGFYLSSHPLDKYRDIVTAFSINKLSE 962 >gi|149181134|ref|ZP_01859634.1| DNA polymerase III subunit alpha [Bacillus sp. SG-1] gi|148851221|gb|EDL65371.1| DNA polymerase III subunit alpha [Bacillus sp. SG-1] Length = 1081 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1002 (39%), Positives = 597/1002 (59%), Gaps = 55/1002 (5%) Query: 44 IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103 +AITD N ++ + F Q+ I+PIIG D+ M+ + + FP +VLL Sbjct: 1 MAITDRNVMYGVIPFYQECRKNNIKPIIGMTADV-------MSEREERSFP----LVLLA 49 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 GYQ L+++ S + K I WL+ G EGLI +T G G I++ Sbjct: 50 KNNAGYQNLLKISSVI----GTKSPEGIPYKWLKGYG-EGLIGITPGGKGEIEQHLLAGD 104 Query: 164 SQVAEKRLLTFKKLFGDR-LYVNLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFL 220 AE + +++FG+ +++LQ H G DR E + +L + V TN+ F+ Sbjct: 105 INQAEDVVHRMQQVFGEESFFLSLQNH-GLEDDRKIEDGIEKLKQKLSIRQVVTNDVQFV 163 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIAR 279 +ED AH+ L+A+ ++ DR + D +Y K+R EM+ +F +ALENT+++A Sbjct: 164 EKEDAFAHECLLAIRDGVKLADDDREILPNDQYYFKSRDEMLDLFGSHVDALENTMKVAN 223 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 +C+ + + +LP++ + E + L + GL+ R + + DY Sbjct: 224 QCNVEIAFNQNLLPKYPLPAGE----EADQYLHGVCMQGLKERGLE-------NIPDYLD 272 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RL++EL VI +M FS YFLIV DF+++AK +I GPGRGS AGS+ AYAL ITD+DP++ Sbjct: 273 RLEYELTVIQKMNFSDYFLIVWDFMKYAKDQHILTGPGRGSAAGSLVAYALRITDVDPIK 332 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 LLFERFLNP+R+SMPD DIDF RR+EVI YV KYG VAQIITFG+L AKAALR Sbjct: 333 HGLLFERFLNPERISMPDIDIDFPDYRREEVIEYVHKKYGDLHVAQIITFGTLAAKAALR 392 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKL 518 D R ++++L K IP+ P SL+++ D+S FR RL + + KL Sbjct: 393 DTARVFGFNSKELEQLSKFIPSRPG---SLKSVYDESADFRNFINESQHKQRLFQTALKL 449 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL RHASTHAAG++I +RPL L+P+ + + ++ +TQ+ M+ +E+ GL+K DFLGL+ Sbjct: 450 EGLPRHASTHAAGVIISERPLVDLIPI-QAGQGNVHLTQYPMEILEEIGLLKMDFLGLRN 508 Query: 579 LTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT+L + + + + G ++ L +P +D +T+ LL+ T G+FQLES GM+ L ++P Sbjct: 509 LTILDRIVASIRKGTGKRLSLDDLPQNDEKTFDLLSQGRTDGVFQLESDGMKNVLVKLRP 568 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 + EDI+A+ +L+RPGP++NI ++ +RK+G+E I HP + +L T GVI+YQEQ+MQ Sbjct: 569 NSFEDIVAVNALFRPGPMENIPLFISRKHGEETIEYPHPDLKEILGVTYGVIVYQEQIMQ 628 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IA ++G+SL EAD+LRRA+ KK +E +D +++ FI GA G S A I++L+ +FA Sbjct: 629 IASKMAGFSLGEADLLRRAVSKKKREVLDSERKHFIDGALNKGYSFETAQEIYDLIVRFA 688 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 +YGFN+SHA AY++I+YQ A++K +YP FLAA +T + N K+ ++ ++A+Q +I I+ Sbjct: 689 NYGFNRSHAVAYSMIAYQLAYLKANYPSYFLAALLTSVIGNDTKVSQYIREAKQNDINIL 748 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PPS+N FKV I YSL A++GVG + I + +KPF L DFC RV K + Sbjct: 749 PPSINLSQFPFKVEKGGIRYSLGAVRGVGAAALKEIYQERQEKPFVDLFDFCLRVSLKAV 808 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN-----KHENIFAHEKG 932 NR+ LE+LVF+GALD FG R LL SLD ++++ V + + E F K Sbjct: 809 NRKTLEALVFSGALDDFGVDRSTLLASLDVALEHSELVRPQDQDYDLFQEEEAFFLKPKY 868 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 T + + LEK + E E++VLG Y S HP+ ++ + + + + A G Sbjct: 869 TEVEDMPLEK--------KLEYEKQVLGLYLSDHPVSPFESLFKNVSAIDLFDLEA---G 917 Query: 993 N-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 N NIR+ + + + +T+KG + ++T S+ + E E FP Sbjct: 918 NKNIRVGVYLTAVKTIRTKKGEVMAFITMSDSSGEMEGVIFP 959 >gi|86149829|ref|ZP_01068058.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596922|ref|ZP_01100158.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218562357|ref|YP_002344136.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|14194692|sp|Q9PPI9|DPO3A_CAMJE RecName: Full=DNA polymerase III subunit alpha gi|85839647|gb|EAQ56907.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190611|gb|EAQ94584.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112360063|emb|CAL34855.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925974|gb|ADC28326.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni IA3902] gi|315930589|gb|EFV09621.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 305] Length = 1200 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1001 (38%), Positives = 589/1001 (58%), Gaps = 55/1001 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGIEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + I EE E GLE RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGLEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ E+F V + E+ +LG Y SGHPLD + Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989 >gi|206895524|ref|YP_002247456.1| DNA polymerase III subunit alpha [Coprothermobacter proteolyticus DSM 5265] gi|206738141|gb|ACI17219.1| DNA polymerase III subunit alpha [Coprothermobacter proteolyticus DSM 5265] Length = 1128 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1040 (39%), Positives = 601/1040 (57%), Gaps = 68/1040 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS+YSLL+G ++ + PAIAITD + +EF +A GI+PI Sbjct: 5 FVHLHVHSAYSLLDGVTLPKKLVQRAKDLGMPAIAITDHGVTYGLVEFVSEAQRLGIKPI 64 Query: 71 IGCQLDIDMQDNLKMT-NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +G + +D K N+ K PF +VLLV A G++ L L+++ YL +G Sbjct: 65 VGVEGYQAQRDRKKREGNKDKEPF----HLVLLVKNALGFRNLNILLTKAYL--EGFY-Y 117 Query: 130 RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 R W L E EGLI + +G I RA + A + ++ +FG Y+ + Sbjct: 118 RPRFDWELLEQYHEGLIASSACLAGAIPRALLEGDEKKALELAGRYQDIFGKGNFYLEIM 177 Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H D+ R ++ +V+L+ +PL+ TN+ + E+Y DVLMA+A ++ +R Sbjct: 178 DHNLADQQRVNKAIVELSKRTGIPLLVTNDVHYGRPEEYSIQDVLMAIATGATLNDPNRF 237 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + D YLK+ EM FS+ PEAL N++ IA F+L + LP+F E Sbjct: 238 KYETDQMYLKSADEMWERFSETPEALLNSLAIAEMVDFMLPLGEQHLPKFSVPEG----Y 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E + LR +L Q + K Y +++ R+++EL+VI +M F+GYFLIV D Sbjct: 294 TENSYLR---------KLTQDGLLKRYGDNPSKEVLDRMEYELSVIEKMGFAGYFLIVQD 344 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I WAK IPVGPGRGS AGS+ AY ITD+DPL++ LLFERFLNP+R+SMPD D+DF Sbjct: 345 YINWAKSQGIPVGPGRGSAAGSLVAYLTGITDVDPLQYGLLFERFLNPERISMPDIDVDF 404 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RRDEV+RYV+NKYG E VAQI TFG+L A+AA+RDVGR L +P + VDRL K IP + Sbjct: 405 CARRRDEVLRYVRNKYGEENVAQIATFGTLAARAAIRDVGRVLGVPLALVDRLSKSIPQN 464 Query: 483 P--AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 AH L DD + ++ +P + R+LEI++++EGL RHASTHAAG+VI D+PL Sbjct: 465 MELAHAEKL----DDVKNLISQ--NPDLARVLEIAKQVEGLPRHASTHAAGVVIADKPLY 518 Query: 541 QLVPMY--RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597 + V + D TQ +EK GL+K DFLGL+ +T++ +L ++ +R G+ VD Sbjct: 519 EYVALQASSDEAGINVTTQLAKDDVEKLGLLKMDFLGLRNMTVISDALRWIKERYGIDVD 578 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L+ + DD + Y +L+ T+ +FQLESSG R L+ ++P E+IIA +LYRPG + + Sbjct: 579 LNKLSKDDSKVYEMLSAGETVAVFQLESSGFRSFLKDLKPTRFEEIIAAEALYRPGTLGS 638 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + Y +RK+G+E + H + P+L+ET G+I+YQEQ+MQIA +++GYSL EADVLRR Sbjct: 639 GGVKSYVDRKHGREPVDYFHDDLKPILEETYGIIVYQEQIMQIASVIAGYSLGEADVLRR 698 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 A+ KK +EE+ K +E F+S + G ++ I+E + FA+YGFNKSH+AAYA ++Y Sbjct: 699 AISKKKEEEILKLREDFVSRGVQRGYARETVEKIYETIVHFAEYGFNKSHSAAYAHVTYY 758 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNR 834 TAW+K++YP E+ AA + +DN EK+K + +AR+ I+I+PP VN F G+N Sbjct: 759 TAWLKSYYPTEYFAALLASFVDNTEKLKVYISEARRLGIKILPPDVNKSEHYFIPEGENE 818 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L IK VG I++ A PF S +DF RV+ + +N++V ESL+ AGA D Sbjct: 819 IRFGLLGIKNVGLAAVEEILKTRATGGPFSSFQDFLLRVNDRVVNKKVTESLIRAGAFDS 878 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 G R LL+ L T + T +D ++L+ E Sbjct: 879 LG-DRKSLLRQLS-------------TGITTQTLFQIEDTSNDDLSLDP---------ME 915 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 +E+ LG Y + HPL+ Y IL + +SV I G +++ V S + +K+R + Sbjct: 916 DEREYLGLYITTHPLERYMAILSNQNLTAL-DSVGEIDG-LVQVGGFVSSTRVRKSRNNN 973 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + T + + E P Sbjct: 974 QYMTFTLEDLTSQVEVTVLP 993 >gi|86151776|ref|ZP_01069990.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85841405|gb|EAQ58653.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 260.94] Length = 1200 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1001 (38%), Positives = 590/1001 (58%), Gaps = 55/1001 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F ++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGVIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + I EE E N + GLE RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ E+F V + E+ +LG Y SGHPLD + Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989 >gi|292670795|ref|ZP_06604221.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas noxia ATCC 43541] gi|292647416|gb|EFF65388.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas noxia ATCC 43541] Length = 1130 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1040 (37%), Positives = 610/1040 (58%), Gaps = 42/1040 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+GA + ++ + ++A+TD ++ A+ F ++A A GI P Sbjct: 2 AFAHLHVHTEYSLLDGASRIKELVRRTKELGMDSVAMTDHGVMYGAVRFYKEAKAQGIHP 61 Query: 70 IIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +IGC++ + Q+ ++ Q ++LL GY+ L++LVS + ++ Sbjct: 62 VIGCEVYLAPRMRQERAEVDGQ------RYYHLILLAENELGYRNLVQLVS-LANIEGYY 114 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVN 185 RI L+ EG+I L+ +G I +A + + A++ + + +FG ++ Sbjct: 115 YKPRIDKELLRRY-HEGIIALSACVAGEIPQAILRGNIEQADEIVREYIDIFGHANFFLE 173 Query: 186 LQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H + + ++ LA H + LVATN+ ++ +D E HD+L+ V ++ D Sbjct: 174 IQDHGLPEEKTVNHALRDLAEKHGVRLVATNDVHYVHADDSEFHDILLCVQTGRTINDPD 233 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKEC 300 R R + PD+YLK+ EM +F+D P ALENTV+IA RC ++ P P E Sbjct: 234 RMRFSGPDYYLKSEQEMAELFADYPGALENTVKIAERCQVDFTFGELQLPYYPMPKGYES 293 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 DD+ LR L +R + RQRLD+EL VI M ++ YFLIV Sbjct: 294 DDVY------LRALCEERLPLRYPDAD-------DEIRQRLDYELGVIHNMGYASYFLIV 340 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +A+++ + VGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R+SMPD DI Sbjct: 341 WDFINYAREHGVAVGPGRGSAAGSIVAYLLGITNIDPLQYALLFERFLNPERVSMPDIDI 400 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF R VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+S+V + KLIP Sbjct: 401 DFDDINRGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFSEVSTITKLIP 460 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A+ + + FR+ D + R++++++K+EGL R+ S HAAG+VI PL+ Sbjct: 461 AELNITLD-RALQESTDFRKRYEEDEAARRVIDLARKIEGLPRNTSIHAAGVVIAKSPLA 519 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 VP++ V VT+F+ +E GL+K DFLGL+TLT++ +++ + + GV++D+ Sbjct: 520 DQVPVW--VSEGTLVTEFDKDDVEALGLLKMDFLGLRTLTIIADTVNHVRRSHGVELDID 577 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T +L T +FQ+ES+GM ++ +QP D+I V+LYRPGP+ + + Sbjct: 578 QIPLEDAQTAKMLCNGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGM 637 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V + + +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAM Sbjct: 638 VTDFIDGLHGKKEVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADILRRAM 697 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK E + QKE F+ G KNGI ++A IF+LL FADYGFNKSH+AAY ++++QTA Sbjct: 698 GKKKHELLMAQKEIFLQGCEKNGIEASLANRIFDLLTHFADYGFNKSHSAAYGLLAWQTA 757 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYPVEF+A +T MD +KI + Q RQ I+I+PP +N+ F + I + Sbjct: 758 YLKAHYPVEFMAGVLTSIMDKTDKIPVYIQLCRQMKIKILPPDINSSVATFGIEGGAIRF 817 Query: 838 SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAA++ VG + A+ F SL DFC+RVD + LN+R +ESL+ GA D G Sbjct: 818 GLAAVRNVGENAIASMERVRAEGGKFRSLVDFCARVDMRTLNKRAIESLIKCGAFDSIGM 877 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENE 955 R QLL +LD + A +++ + +F + +I + + R E Sbjct: 878 ERNQLLAALDAAMQDAARRQRDLISGQIGLFGQDTMEEVQQIQISSDVPPSTTRERLTWE 937 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGS 1013 + GFY +GHPLD Y L + G + TIR + +R+ ++ + ++ T+KG Sbjct: 938 KEATGFYITGHPLDDYSDTLACLLPIG--DIPGTIRKDRQLVRIGGILTNTKRFTTKKGD 995 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + + + E FP Sbjct: 996 TMLFAELEDFTGRIEVTIFP 1015 >gi|153956157|ref|YP_001396922.1| DNA polymerase III DnaE [Clostridium kluyveri DSM 555] gi|219856482|ref|YP_002473604.1| hypothetical protein CKR_3139 [Clostridium kluyveri NBRC 12016] gi|146349015|gb|EDK35551.1| DnaE [Clostridium kluyveri DSM 555] gi|219570206|dbj|BAH08190.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1158 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/996 (38%), Positives = 590/996 (59%), Gaps = 54/996 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +K +V L H+ YSLL+ + ++ ++ + + +IAITD +++ +EF ++A A Sbjct: 3 DKKYKWVSLHQHTEYSLLDSSAKISELIARAKELEMDSIAITDHGSMYGCVEFYKEAKAQ 62 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC++ + + N G+ +VLLV EGY+ L+++VS + + Sbjct: 63 GIKPIIGCEIYVSQKSMYVKQNNGEN---GNYHLVLLVKNKEGYKNLMKIVSTASI-EGF 118 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L+E +EGLI L+ SG + ++ + A++ L ++K+F + Y+ Sbjct: 119 YYKPRVDHDYLRE-HSEGLIALSACMSGEVQANILKDNIKTAKEIALFYQKIFKEGFYLE 177 Query: 186 LQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ + +Q ++ ++ +PLVATN+ ++ +EDY +HDVL+ + V ++ Sbjct: 178 LQYHGIEEQLKINQELISMSKELNIPLVATNDVHYIRKEDYRSHDVLLCIQTGKTVDEEQ 237 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R D YLK+ +M +FS +PEALENTV+IA +CSF + H LP+F KE D Sbjct: 238 RMRYPSDEFYLKSPEQMYEMFSHVPEALENTVKIADQCSFDYEFHNSKLPKFPLKEGID- 296 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E EL K + + I RL++EL++I +M + YFLIV DF Sbjct: 297 PYEYMKELCYKGLKKRYKNIDDNLI----------NRLEYELDIIKKMGYVDYFLIVWDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +A +N I GPGRGSGAGS+ AY L IT +DP++++L+FERFLNP+R+SMPD D DFC Sbjct: 347 ISFAVQNGIMTGPGRGSGAGSIVAYTLGITKVDPIKYNLIFERFLNPERISMPDIDSDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG V+QI+TFG++ A+A +RDVGRA+ PY +VDR+ K+IP Sbjct: 407 YERRGEVIDYVVGKYGKNNVSQIVTFGTMAARACIRDVGRAMNYPYGEVDRIAKMIPTIL 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ + + A + L+++++ LEGL RH STHAAG+VI +PL V Sbjct: 467 NITID-KALEINPELKGAYEEELRTKELIDVARALEGLPRHTSTHAAGVVIASKPLVNYV 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ ++ + VTQF M +E+ GL+K DFLGL+TLT+L+ +L + + +G +DL I Sbjct: 526 PLQKNEGN--IVTQFTMNTLEELGLLKMDFLGLRTLTVLRDALTMIKENKGKSIDLDNID 583 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD Y ++ T+G+FQLES GM ++ ++PD +EDIIA +SLYRPGPI I Y Sbjct: 584 YDDKAVYDMIGQGKTVGVFQLESPGMTSFMKELKPDSLEDIIAGISLYRPGPIAEIPKYI 643 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN +I + P ++ +L T G ++YQEQVMQI + L+GYS+ +D++RRAM KK Sbjct: 644 KNKNSVHEINYVTPQLEHILSVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKH 703 Query: 723 EEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 M++++ FI G +NGIS+ A +IF+ + FA Y FNKSHAAAYA Sbjct: 704 HVMEEERRNFIYGIVDENGKVEVPGCIRNGISEKAANDIFDSMIDFASYAFNKSHAAAYA 763 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 V+++QTA++ +YP EF AA + + EK+ + + A+ I+++PPS+N F V Sbjct: 764 VVAFQTAYLMHYYPTEFTAAMLNSVKGDSEKVAYYIRFAKGIGIEVLPPSINESYAKFTV 823 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI + L+A+K VG I+++ F L DFCS ++ + +N+RV+ESL+ AG Sbjct: 824 EDGRIRFGLSAVKNVGENIIDSIVKSRLKHGKFKDLVDFCSNIEIQSINKRVVESLIKAG 883 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--N 947 A DCFG R QL SL Y + ++ ++ +NI KG S +E S+E Sbjct: 884 AFDCFGKYRSQL--SL----VYEKIIDSVINSRKKNI----KGQISLFSQIEDSSIEIQY 933 Query: 948 SSVR-------FENEQRVLGFYFSGHPLDVYKPILR 976 S++ E+ + G Y SGHPLD Y+ L+ Sbjct: 934 PSIKEFMKRDMLSMEKEMTGLYLSGHPLDEYEKTLK 969 >gi|315926833|gb|EFV06207.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 1088 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1001 (38%), Positives = 589/1001 (58%), Gaps = 55/1001 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGIEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + I EE E GLE RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGLEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ E+F V + E+ +LG Y SGHPLD + Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989 >gi|124025641|ref|YP_001014757.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. NATL1A] gi|123960709|gb|ABM75492.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. NATL1A] Length = 1172 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1062 (37%), Positives = 613/1062 (57%), Gaps = 58/1062 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV + HS YSLL+GA L ++ + PA+A+TD ++ A+E + AA I+P Sbjct: 2 AFVPIHNHSDYSLLDGASQLPLMVQRAKELGMPALALTDHGVMYGAIELLKLCKAANIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE---GYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P LV A+ GY+ L++L + +L Sbjct: 62 IIGNEMYV-------INGSIDDPQPKKEKRYHLVVVAKNQIGYENLVKLTTLSHLNGVRG 114 Query: 127 QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + R C+ +L + +EGLI T G I +A VA + +K++ GD Y Sbjct: 115 RGIFSRPCIDKYLFKKYSEGLICSTACLGGEIPQAILKGRIDVAREVAAWYKEVLGDDFY 174 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR S++V+++ ++ ++ATN++ +LS+ D EAHD L+ V ++S Sbjct: 175 LEIQDHGSIEDRIVNSEIVKISEELDIKIIATNDAHYLSKNDIEAHDALICVLTGKLISD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 R R T Y+K+ EM S+F+D + A+ENTV+++ + + +P F Sbjct: 235 HKRLRYTGTEYIKSEDEMRSLFTDHLDKNVINSAIENTVKLSNKVEEYKILGTYKMPNF- 293 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSG 355 D Q E L+ + GL L I+K + Y++RLD+EL VI +M F Sbjct: 294 -PIPDGYQPIE--YLKEITIKGL---LEILDISKFENLPITYKERLDYELKVIEQMGFPT 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D+I++A++ NIPVGPGRGS AGS+ A++L IT+IDP+ LLFERFLNP+R SM Sbjct: 348 YFLVVWDYIRFAREQNIPVGPGRGSAAGSLVAFSLHITNIDPVENGLLFERFLNPERKSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D DFC +RR EVI YV KYG ++VAQIITF + +KA L+DV R L +PY DRL Sbjct: 408 PDIDTDFCIERRGEVIDYVTKKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRL 467 Query: 476 CKLIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 KLIP P L A+ + + F E D V + ++++ ++EG + HAAG Sbjct: 468 AKLIPVVRGKPAKLAAMISKESPNKDFYEKYNNDSKVKKWVDMAMRIEGTNKTFGVHAAG 527 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI L LVP+ R+ + +TQ+ M+ IE GL+K DFLGL+ LT+++K++D + + Sbjct: 528 VVIAANSLDNLVPLQRNNDGQI-ITQYFMEDIESLGLLKMDFLGLRNLTMIEKTIDLVEK 586 Query: 592 R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 G ++D +PF D +T+ LL+ GIFQLESSGMRQ ++ ++P +EDI ++++LY Sbjct: 587 SIGKRLDPDSLPFTDEKTFELLSRGDLEGIFQLESSGMRQIVKDLKPSSLEDISSILALY 646 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+D ++ + NRK+GKE I H ++P+L ET G+++YQEQ+M+IAQ L+GY+L Sbjct: 647 RPGPLDAGLIPKFINRKHGKESIDFQHQSLEPILSETYGIMVYQEQIMKIAQDLAGYTLG 706 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 +AD+LRRAMGKK EM + + F+ GA KNG++ IA +F+ + FA+Y FNKSH+ A Sbjct: 707 QADLLRRAMGKKKVSEMQRHRTLFVDGAVKNGVTDVIAEQLFDQMVLFAEYCFNKSHSTA 766 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++YQTA++K HYPV ++AA +T+ + +KI+++ + I +MPP++NT VDF Sbjct: 767 YGAVTYQTAYLKAHYPVAYMAALLTVNAGSADKIQRYISNCNSMGINVMPPNINTSGVDF 826 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 DN I + +A+K +G R I+ + D F SL FC R+ +NRR LE+L+ Sbjct: 827 TPKDNSILFGFSAVKNLGDGAIRKIITSRDEDGQFTSLAQFCDRISLGSVNRRGLEALIH 886 Query: 888 AGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS- 944 +GALDC +R QL+ LD ++A K+RT+ N+F T ++ + +S Sbjct: 887 SGALDCLEKNANRAQLIADLDLTIEWASSRAKDRTSGQGNLFDLSNSTNNESSPNDDYSS 946 Query: 945 ----------VENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIR 991 + + ++ E E +GFY S HPL + +P ++ + + EE Sbjct: 947 APKAKEVQEYLPSDKLKLEKEH--VGFYLSDHPLKQLSEPAKLIAPISLSSLEEQKDK-- 1002 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + + AM+ ++ TRKG R+ + + EA FP Sbjct: 1003 -SKVSVIAMIPEMREVTTRKGDRMAIIQLEDLTGSCEAVVFP 1043 >gi|229129888|ref|ZP_04258854.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-Cer4] gi|228653579|gb|EEL09451.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-Cer4] Length = 1105 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1032 (36%), Positives = 610/1032 (59%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+I Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 224 DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR GL R + K H + RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 281 ---LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKIGKEIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 808 GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ LGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|167465076|ref|ZP_02330165.1| DNA polymerase III DnaE [Paenibacillus larvae subsp. larvae BRL-230010] Length = 1218 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1059 (35%), Positives = 607/1059 (57%), Gaps = 48/1059 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA ++++ ++ A A+A+TD ++ + F + GI+P Sbjct: 3 SFVHLHVHSEYSLLDGAARIHDLTERAAELGMSALALTDHGVMYGTIAFYKACKQRGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + N+ + P + ++LL GY+ L++L S +L + Sbjct: 63 IIGCEVYFTTGSIRQKGNRQEQP---IYHLILLAKNNTGYRNLMKLCSIGHL-EGFHYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L +EGLI L+ + + + + A K ++ +FG+ Y+ +Q H Sbjct: 119 RIDAEHLA-AHSEGLICLSACLGSEVSQHLLHDRKEDARKAAERYRSIFGEDFYLEIQDH 177 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + +++L+ +PL+ATN+ ++ E D+E DVL+ + V +DR ++ Sbjct: 178 GMMEQKKVMHSMIELSRETGIPLIATNDVHYVREPDHEVQDVLICIGTGKTVEDEDRLKM 237 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T YLK R M ++F+ +PEA+ NT ++A +C +++ ILP F E Sbjct: 238 GTSQLYLKTREAMAALFAHVPEAVLNTEKVAAQCQVEIELGHSILPSFEPIPESLTAAEY 297 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 +L + ++G + + Q+L +EL+VI M FS YFLIV DFI++A Sbjct: 298 LKQLCLEGISGRYGTRQEWNDPSSDFRKQVEQKLYYELDVIESMGFSDYFLIVWDFIRYA 357 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GPGRGS AGS+ AYAL ITD+DP+ ++LLFERFLNP+R++MPD DIDF +RR Sbjct: 358 HEQGIMTGPGRGSSAGSLVAYALNITDVDPIEYNLLFERFLNPERITMPDIDIDFNDERR 417 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV KYG ERVAQIITFG++ AKAA+RDVGR L +PY++VD+ KLIPN + Sbjct: 418 DEVIDYVVRKYGKERVAQIITFGTMAAKAAVRDVGRVLNLPYNEVDKAAKLIPNHLGMTI 477 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 A+ +S RE P LL +++++EG+ RHASTHAAG+VI PL+ VP+ + Sbjct: 478 D-HALEVNSDLRELAEKQPKTAELLNMAKRVEGMPRHASTHAAGVVISRDPLTDYVPL-Q 535 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 + P+TQ++M+ +E GL+K DFLGL+TL++++++L ++ Q G VD + D Sbjct: 536 EGTEQTPLTQYSMEHLESIGLLKIDFLGLRTLSIIERTLAWIKEQEGKLVDWTQTDKSDP 595 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY LL+ T G+FQLES GMR+ L+ ++P EDII++++LYRPGP++ I Y K+ Sbjct: 596 KTYELLSRGETTGVFQLESPGMRRVLKELKPSRFEDIISVLALYRPGPMEFIPQYIACKH 655 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + + V HP ++ +LK+T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E +D Sbjct: 656 KQTEPVYPHPSLETILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVLD 715 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +Q+ F+ G+ G + A ++++++ +FADYG+ ++HA AY V+++QTA++K HYP Sbjct: 716 EQRSHFVEGSLGQGFTAEEANHVYDMIVRFADYGYPRAHATAYGVLAFQTAYLKAHYPRH 775 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVG--------- 831 F+A+ +T N K+ ++ + R+ + ++PP +N TP G Sbjct: 776 FMASMLTAVTGNQRKMAEYVDECRRMKLDVLPPDINESGVLFTPVASPGFGTEPARYAGE 835 Query: 832 ------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879 + I + LAAIK VG + +++ + F SL DFC RVD + N+ Sbjct: 836 PAEEGMADKIPVNGAIRFGLAAIKNVGASAIEAVLKERRKETFTSLLDFCRRVDLRICNK 895 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTF 934 RV+ESL+ AGA D R QL+ LD+ + A K + + ++F H + Sbjct: 896 RVIESLIQAGAFDTLPGHRAQLVAMLDDTAEAALKWRKEKDDLQLHLFGFVEEPHWEVEV 955 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 D L K + + E+ ++G Y SGHPLD ++ +L ++ + + Sbjct: 956 PDVPMLTKLQ------QLDYERELIGMYLSGHPLDAHEDLLGRLEADPLYQLQEYPDHSE 1009 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +A MV S + T++G + ++ + + E FP Sbjct: 1010 VVVAGMVASSKTIVTKRGEPMAFMELEDRIAKVEIVLFP 1048 >gi|300866715|ref|ZP_07111399.1| DNA polymerase III subunit alpha (modular protein) [Oscillatoria sp. PCC 6506] gi|300335315|emb|CBN56559.1| DNA polymerase III subunit alpha (modular protein) [Oscillatoria sp. PCC 6506] Length = 1257 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/1102 (36%), Positives = 632/1102 (57%), Gaps = 103/1102 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D+ PAIA+TD ++ A+E + I P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPPLIDRAVELGMPAIALTDHGVMYGAIELIKVCRNKNITP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ + + ++ + +G+ + V +L +GY+ L++L + +L ++ + Sbjct: 62 IIGNEMYV-VNGDISVKVKGRKKYHQV----VLAKNTQGYKNLVKLTTISHLQGMPERGL 116 Query: 130 --RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R C++ L E EGLI+ +G +G + R + + A K +K LFGD Y+ + Sbjct: 117 FARPCINKELLEQYHEGLIVTSGCRAGEVPRLIDLGNLEEARKVAKWYKDLFGDDYYLEI 176 Query: 187 QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H + DR ++V++ + +VATN+S F + D EAHD L+ + +V + R Sbjct: 177 QDHGFWEDRIVNIELVKIGKELGIKIVATNDSHFTACSDVEAHDALLCIQTGKLVEDEKR 236 Query: 246 PRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPILPRFIEKE 299 R + YLK+ EM +F D LP EA+ NT+E+A + P +P + Sbjct: 237 MRYSGTEYLKSAEEMAQLFRDHLPDDVIKEAIANTLEVAGKIKKYEIFDEPRIPTY---- 292 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMK 352 E + A +E QG + + + A++ Y++RL++EL +I M Sbjct: 293 --------EIPPDHTADTYVEYVAWQGLLER-FKAKERKEIKPVYKERLEYELKMIQDMG 343 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 FS YFL+V D+I +A++NNIPVGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R Sbjct: 344 FSTYFLVVWDYIDYARRNNIPVGPGRGSAAGSLVAYAMKITNIDPVHHGLLFERFLNPER 403 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 SMPD D DFC +RRD++I+YV KYG ERVAQIITF L +K+ L+DV R L +PY + Sbjct: 404 KSMPDIDTDFCIERRDDMIKYVTEKYGAERVAQIITFNRLTSKSVLKDVARVLGVPYKRA 463 Query: 473 DRLCKLIPNDPAHPVSLQAIADDS----RFREARLADP--------------SVDRLLEI 514 D + KLIP P L + + FR+A + +V + L++ Sbjct: 464 DEMAKLIPVSRGKPEKLAVMISEQTPAPEFRQAYEEETLQAKNNDGTEEKTIAVRQWLDM 523 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + ++EG + HAAG+VI +PL ++VP+ R+ + +TQ+ M+ +E GL+K DFL Sbjct: 524 AIRIEGTNKTYGVHAAGVVISAQPLDEIVPLQRNNEGAV-ITQYYMEDLESLGLLKMDFL 582 Query: 575 GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH------------------ETYHLLTTK 615 GLK LT+LQK+++++ Q R +D ++P D +TY LL Sbjct: 583 GLKNLTMLQKTVEYIKQTRDCDIDPEMLPSDIERKAQEAFVTCKKLPEDVSKTYKLLAKG 642 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS 673 GIFQLESSGM ++ ++P C+EDI ++++LYRPGP+D ++ + +RK+G+E + Sbjct: 643 DLEGIFQLESSGMLDVVKKLKPSCLEDISSILALYRPGPLDAGLIPQFIDRKHGRELVEY 702 Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733 HPL++P+LKET G + +QEQ+M++AQ L+GYSL +AD+LRRAMGKK +EM KQ+E FI Sbjct: 703 DHPLLEPILKETYGTLCFQEQIMRVAQDLAGYSLGQADLLRRAMGKKKADEMQKQRETFI 762 Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793 GA+KNG+S+ IA +FE + +FA+Y FNKSH+ AYA ++YQTA++K +YPVE++AA +T Sbjct: 763 DGATKNGVSQRIAEKLFEQMLQFAEYCFNKSHSMAYAYVTYQTAYLKANYPVEYMAALLT 822 Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-----KVGD---NRIYYSLAAIKGV 845 + +K++K+ + + I+I PP +N V F +V D ++I + ++A+K + Sbjct: 823 ANSGDQDKVQKYIANCIKMGIEIEPPDINRSKVTFTPLPKQVTDAEIDKILFGMSAVKNL 882 Query: 846 GTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G + +I++A + F SL DFC RVD K +N R LE+L+ GALD +R QL+ Sbjct: 883 GDSAIENILKAREEGGNFKSLADFCERVDLKAVNSRALEALIQCGALDRLNSNRNQLMHD 942 Query: 905 LDNIQKYAQWVEKNRTNKHENIFA------HEKGTFSDKITLEKFSVE-NSSVRFENEQR 957 LD + K+AQ +K+R + N+F E D I K + + + E+ Sbjct: 943 LDGVVKWAQDRKKDRESGQGNLFDLLGMSFGETANSYDSIPKHKPVPDFDKQKKLSLEKE 1002 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESV-----ATIRGNN-IRLAAMVVSKQQKKTRK 1011 +LGFY S HPL K +L EE+V A +G + ++L MV + + T+K Sbjct: 1003 LLGFYVSDHPL---KSVLLAT---QNEETVTVAQLADKKGKDVVKLIVMVTAIKLVTTKK 1056 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 R+ + + + EA FP Sbjct: 1057 NDRMAILQVEDLTGQLEAVVFP 1078 >gi|170756612|ref|YP_001783011.1| DNA polymerase III DnaE [Clostridium botulinum B1 str. Okra] gi|169121824|gb|ACA45660.1| DNA polymerase III, alpha subunit [Clostridium botulinum B1 str. Okra] Length = 1185 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1076 (35%), Positives = 625/1076 (58%), Gaps = 57/1076 (5%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 Q+ EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++ Sbjct: 4 NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 A GI+PIIGC++ + ++ + Q K +VLLV GY+ L+E+VS+ + Sbjct: 64 AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV 120 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + R+ +L++ +EGLI L+ G + + + AE+ L +K +F +R Sbjct: 121 -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKER 178 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ H ++ + ++ +V+++ +PLVATN+ ++ +EDY++HD+L+ + V Sbjct: 179 FYLELQYHGMEEQLKVNETLVKMSKDLYIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298 +++R R D YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E+ Sbjct: 239 EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298 Query: 299 ECDDIQKEEENELRNKAVAGLEVR--LAQGAIAKGY-------------HAQDYRQRLDF 343 D + LR GL +R + + I K + A D +RL++ Sbjct: 299 GVDPYEY-----LREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNY 353 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL++I +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+ Sbjct: 354 ELSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLI 413 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+SMPD D DFC +RR EVI YV KYG E V+QIITFG++ A+A +RDVGR Sbjct: 414 FERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGR 473 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 A+ PY++VDR+ K+IP ++ +A+ + +E + V L+++++ LEGL R Sbjct: 474 AMNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEVYDNEERVRELIDVARALEGLPR 532 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 H STHAAG+VI +PL VP+ ++ S VTQF M +E+ GL+K DFLGL+TLT+++ Sbjct: 533 HTSTHAAGVVIASQPLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMR 590 Query: 584 KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ + + + + +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +ED Sbjct: 591 DAVRIIKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLED 650 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIA +SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L Sbjct: 651 IIAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDL 710 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLA 754 +GYS+ +D++RRAM KK + M++++ FI G NGI + +A ++F+ + Sbjct: 711 AGYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMM 770 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A+ I Sbjct: 771 DFASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGI 830 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 +I+ P++N +F V DNRI + L A+K VG +I+ + K F L DF ++VD Sbjct: 831 EIIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVD 890 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + +N+R++ESL+ AGA DC R ++L + I Q ++N N+F Sbjct: 891 TSIINKRLVESLIKAGAFDCLKIYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDN 950 Query: 934 FSDKITLEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------KMG 979 I ++ +++ ++ + E+ + G YFSGHPL+ Y+ L+ K Sbjct: 951 KESSIDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKES 1010 Query: 980 IKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++G +++++I+ G+ + + M+ +K TR + ++ + E FP Sbjct: 1011 LEGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|307720929|ref|YP_003892069.1| DNA polymerase III subunit alpha [Sulfurimonas autotrophica DSM 16294] gi|306979022|gb|ADN09057.1| DNA polymerase III, alpha subunit [Sulfurimonas autotrophica DSM 16294] Length = 1204 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1083 (36%), Positives = 625/1083 (57%), Gaps = 84/1083 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K PSF HL +H+ YSLL+GA L+N++ ++ ++A+TD N+F A++F ++ Sbjct: 1 MSKQPSFTHLHLHTEYSLLDGANKLSNLVSRVKELGMTSVAMTDHGNMFGAIDFYKQMKG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + I + L G I L +GY+ L+ L S+ ++ + Sbjct: 61 AGLKPIIGMEGYIHNGETL-----GDKSTKQRFHICLYAKNKKGYENLMYLSSKAFI--E 113 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL----------T 173 G RI L+E +EGLI + G ++ + + + L Sbjct: 114 GFYYFPRINKKELRE-HSEGLICTSACLQGEVNWHLNLQNERNVKNGALGYEGALNVARE 172 Query: 174 FKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 ++ +FG+ Y+ L RH G Y + Q+++++ + +VATN++ + +D + H+ M Sbjct: 173 YQDIFGNDFYLELMRHGIGDQLYIDEQILKISRETGIKIVATNDTHYTYPDDAQYHEAFM 232 Query: 233 AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAP 290 + + + +R R + + Y+K+ EM +F+D+PEALE+T EI + F+ V P Sbjct: 233 CIGMNKLYDDPNRMRHSVHEFYIKSPDEMARLFADIPEALEHTQEITNKIEDFVPIVKTP 292 Query: 291 ILPRF-----IEKE-------------CDDIQKEEENELRN------------KAVAGLE 320 P F KE DD +EE+ + + K GLE Sbjct: 293 TPPNFKFTQEYAKEEGLDIDYQDDPPLADDASEEEKKKWLSAADKNDAEYFIIKCREGLE 352 Query: 321 VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380 RL + K H Q+YR RL+FE+++I MKF GY +IV DF++ AK+ + VGPGRGS Sbjct: 353 KRLK--IVPKERH-QEYRDRLEFEMDIINSMKFPGYMMIVWDFVKEAKRIGVAVGPGRGS 409 Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440 AGS+ AY+L ITDIDP+++ LLFERFLNP+R+SMPD D+DF Q RR EVI YV KYG Sbjct: 410 AAGSLVAYSLEITDIDPMKYDLLFERFLNPERVSMPDIDMDFMQARRGEVIDYVTKKYGR 469 Query: 441 ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---------A 491 +VAQIITFGSL AK +RDV R L MP S+ D++ KL+P++ ++ + A Sbjct: 470 NQVAQIITFGSLLAKGVIRDVARVLDMPLSKADQMAKLVPDELGITLNGKTKNGEFKDGA 529 Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 + + RE +DP V R+ E ++KLEGL R+A HAAG+VI + L + P+Y+ Sbjct: 530 FQKEPKLRELVESDPQVGRVWEFAKKLEGLKRNAGMHAAGVVISNEELWKKTPIYKPSGE 589 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYH 610 D VTQ+++ ++E LIKFDFLGLKTL ++ ++ + +R K +D I +D Y Sbjct: 590 DTFVTQYSLNYMEDVDLIKFDFLGLKTLDVIDNAIKLIKRRYDKDIDWHTIDENDKNVYD 649 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668 ++ T T+G+FQ+ESSGM+ + ++P ED+IA+++LYRPGP+++ ++ + RK+G+ Sbjct: 650 VIQTGETVGMFQIESSGMQDLNKRLKPSNFEDLIAVLALYRPGPMESGMLDDFIERKHGR 709 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 ++I + ++ +LK T GVI+YQEQVMQI Q + G+SL AD++RRAMGKK +EM K Sbjct: 710 QEITYVFEALEEILKPTYGVIVYQEQVMQIVQTIGGFSLGGADIVRRAMGKKKVDEMLKY 769 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + F GA+K G+ A +F+L+ KFA YGFNKSH+AAYA++++QTAW+KT+YP EF+ Sbjct: 770 NKEFSEGAAKQGLDYKTASELFDLIEKFAGYGFNKSHSAAYAMVTFQTAWLKTYYPNEFM 829 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK--VGDNR--IYYSLAAIKG 844 AA +T + DN EK+ ++ + ++ I++ PP + ++F +NR I + L IKG Sbjct: 830 AALLTSDKDNTEKVVRYIDEVKRMGIELSPPDICDSYLEFSAITKENREIILFGLGGIKG 889 Query: 845 VGTTTARHIM--EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG A H M E + + SL+DF +R++ K+N+RV+E+++ +G D +GYSR LL Sbjct: 890 VG-EAAIHAMIEEREENGDYASLQDFVNRIEPSKVNKRVVEAIIKSGGFDRYGYSRKALL 948 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-----FENEQR 957 ++ I A+ + + N ++F + ++IT + ++NS E E+ Sbjct: 949 DQIELIVDTAKKASEAKKNVVGSLFGDD-----EEITTVRLELKNSDEYELKEILEFEKD 1003 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 LGFY SGHP+D ++ L ++ E + G+ V Q+K ++KG++ G Sbjct: 1004 TLGFYVSGHPMDDFREELDELNYTLSSELESIKDGSFAIFIGKVEEIQKKISKKGNQFGI 1063 Query: 1018 VTF 1020 V Sbjct: 1064 VNL 1066 >gi|229152799|ref|ZP_04280982.1| DNA polymerase III subunit alpha [Bacillus cereus m1550] gi|228630619|gb|EEK87265.1| DNA polymerase III subunit alpha [Bacillus cereus m1550] Length = 1105 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1032 (36%), Positives = 610/1032 (59%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+I Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 224 DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR GL R + K H + RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 281 ---LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ FI G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFIQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 808 GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ LGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|295697007|ref|YP_003590245.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] gi|295412609|gb|ADG07101.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] Length = 991 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/963 (38%), Positives = 581/963 (60%), Gaps = 54/963 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HL VHS+YSLL G ++ + AD P +AITD NL++A+ F + A AGI+PI+ Sbjct: 1 MHLHVHSAYSLLRGVCRPEALIQRAVADGMPGVAITDWANLYAAIRFVRLAKEAGIRPIL 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G Q+ + ++++++ ++G P ++VLL + +G++ LI LVS L G + + Sbjct: 61 GAQIPL-VEESVQRPSRGDPP-----AVVLLAESEKGFRGLIRLVS---LAHDGPE---L 108 Query: 132 CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 +SW GL +L+GG+ GP+D A ++ A L F ++FG +R ++ +Q Sbjct: 109 GVSWEAVTAHAPGLFLLSGGAEGPVDAALARGDTERARDWLRRFVEVFGPNRAWLEVQDD 168 Query: 190 RGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G +R R S ++V L + L VAT + ++ ED V+ A+ + P Sbjct: 169 -GSERGRLSHYRLVSLGEEYGLLPVATADVHYIDPEDAPLARVVQALRQGDDGAPPPSP- 226 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +P + + +EM + F+ LP+A+ +EIA RC L + +LP F E + Sbjct: 227 -SP-RWFASSAEMRARFAHLPQAVNAALEIAERCRVELPLGRVLLPSFDVPEGES----P 280 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR GL R+ Y+ RL+ EL+VIARM F+ YFLIV DFI+++ Sbjct: 281 DGYLRRLCQEGLRQRVGDPV------PPSYKDRLEHELSVIARMGFASYFLIVWDFIRYS 334 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++N I GPGRGS AGS+ AYAL IT +DP+R LLFERFLNP+R+SMPD DIDF +RR Sbjct: 335 RENGIATGPGRGSAAGSLVAYALGITGVDPVRHHLLFERFLNPERVSMPDIDIDFEDERR 394 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYGH+RVAQIITFG++ A+AA+RD GR +P + VDR+ KL+P + Sbjct: 395 FEVIEYVAQKYGHDRVAQIITFGTMAARAAIRDAGRVTGLPPALVDRVAKLVPASLG--I 452 Query: 488 SL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L QA+ ++ R R + V LL +++ LEGL RH STHAAG+VI L+ +VP+ Sbjct: 453 TLDQALVEEPRLRALMDENEQVRTLLTVAKGLEGLPRHTSTHAAGVVIAPSALTDVVPVQ 512 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPF 603 R L +TQ++M +E GL+K DFLGL+TL++++ + +R V++D + Sbjct: 513 RTPEGGL-ITQYDMASLEAVGLLKMDFLGLRTLSIIEHTRQLAGERLGHAVEIDEE---Y 568 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 D +TY LL T G FQLESSG++ L +QP+C EDI+A++SLYRPGP++NI Y + Sbjct: 569 TDPKTYELLGRGDTDGCFQLESSGVKHVLRDLQPNCFEDIVAVISLYRPGPMENISRYID 628 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 K+G+ + HP ++P+L++T G+++YQEQ+MQIA ++G++L +ADVLRRA+GKK +E Sbjct: 629 AKHGRVPVHYPHPDLEPILRDTYGIVVYQEQIMQIASRMAGFTLGQADVLRRAVGKKKRE 688 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +++Q+ F++G + G + +A +++L+ +FADYGFN+SHA AYAV+S++TA++K HY Sbjct: 689 VLEQQRAAFVAGCLRQGHPRDLAEELYDLIVRFADYGFNRSHAVAYAVLSWRTAYLKAHY 748 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAI 842 P EF A+ ++ M + +K+ ++ ++A Q I+++PPSV T F V D +I ++L AI Sbjct: 749 PAEFFASLLSAAMASADKVAQYVEEAFQRGIEVLPPSVQTSGAGFTVSEDGKIRFALGAI 808 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 K VG + ++ A F SL DF SRVD + +RR +E+L+ AGA D G +R +LL Sbjct: 809 KHVGQAAVQAVLGARRAGTFRSLGDFLSRVDHRACHRRTVEALIRAGAFDELGENRDELL 868 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 L+ H + F ++ + S EN + +E+ ++G Sbjct: 869 GRLER-------------ESHWGGGGAQLTFFGEESPGRRASSENEQEKIRHEKELMGLT 915 Query: 963 FSG 965 F+G Sbjct: 916 FTG 918 >gi|148381315|ref|YP_001255856.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC 3502] gi|153930894|ref|YP_001385691.1| DNA polymerase III DnaE [Clostridium botulinum A str. ATCC 19397] gi|153935249|ref|YP_001389097.1| DNA polymerase III DnaE [Clostridium botulinum A str. Hall] gi|148290799|emb|CAL84933.1| DNA polymerase III alpha subunit [Clostridium botulinum A str. ATCC 3502] gi|152926938|gb|ABS32438.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC 19397] gi|152931163|gb|ABS36662.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. Hall] Length = 1185 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1076 (35%), Positives = 625/1076 (58%), Gaps = 57/1076 (5%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 Q+ EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++ Sbjct: 4 NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 A GI+PIIGC++ + ++ + Q K +VLLV GY+ L+E+VS+ + Sbjct: 64 AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV 120 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + R+ +L++ +EGLI L+ G + + + AE+ L +K +F + Sbjct: 121 -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLEKAEEVALIYKDIFKEG 178 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ H ++ + ++ +V+++ ++PLVATN+ ++ +EDY++HD+L+ + V Sbjct: 179 FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298 +++R R D YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E+ Sbjct: 239 EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298 Query: 299 ECDDIQKEEENELRNKAVAGLEVR--LAQGAIAKGY-------------HAQDYRQRLDF 343 D + LR GL +R + + I K + A D +RL++ Sbjct: 299 GVDPYEY-----LREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNY 353 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL++I +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+ Sbjct: 354 ELSIIQQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLI 413 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+SMPD D DFC +RR EVI YV KYG E V+QIITFG++ A+A +RDVGR Sbjct: 414 FERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGR 473 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 A+ PY++VDR+ K+IP ++ +A+ + +E + V L+++++ LEGL R Sbjct: 474 AMNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEVYDNEERVRELIDVARALEGLPR 532 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 H STHAAG+VI +PL VP+ R+ S VTQF M +E+ GL+K DFLGL+TLT+++ Sbjct: 533 HTSTHAAGVVIASQPLVNYVPLQRNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMR 590 Query: 584 KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ + + + + +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +ED Sbjct: 591 DAVRIIKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLED 650 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIA +SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L Sbjct: 651 IIAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDL 710 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLA 754 +GYS+ +D++RRAM KK + M++++ FI G NGI + +A ++F+ + Sbjct: 711 AGYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMM 770 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A+ I Sbjct: 771 DFASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGI 830 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 +I+ P++N +F V DNRI + L A+K VG +I+ + K F L DF ++VD Sbjct: 831 EIIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVD 890 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + +N+R++ESL+ AGA DC R ++L + I Q ++N N+F Sbjct: 891 TSIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDN 950 Query: 934 FSDKITLEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------KMG 979 I ++ +++ ++ + E+ + G YFSGHPL+ Y+ L+ K Sbjct: 951 KESSIDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKES 1010 Query: 980 IKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++G +++++I+ G+ + + M+ +K TR + ++ + E FP Sbjct: 1011 LEGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|229081856|ref|ZP_04214348.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-2] gi|228701444|gb|EEL53938.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-2] Length = 1105 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1032 (36%), Positives = 611/1032 (59%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+I Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 224 DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR GL R + K H + RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 281 ---LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDI+P+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDINPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 808 GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ VLGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|157415005|ref|YP_001482261.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni 81116] gi|157385969|gb|ABV52284.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni 81116] gi|307747643|gb|ADN90913.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni M1] Length = 1200 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1001 (38%), Positives = 590/1001 (58%), Gaps = 55/1001 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + EE E N + GLE RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ E+F V + E+ +LG Y SGHPLD + Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989 >gi|283956127|ref|ZP_06373614.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni 1336] gi|283792447|gb|EFC31229.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni 1336] Length = 1200 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1001 (38%), Positives = 591/1001 (59%), Gaps = 55/1001 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEKYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGISDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 237 LNDPDRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + EE E N + GLE RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-KEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEEL--KITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G++ I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGNDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ E+F V + E+ +LG Y SGHPLD + Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989 >gi|294794627|ref|ZP_06759763.1| DNA polymerase III, alpha subunit [Veillonella sp. 3_1_44] gi|294454957|gb|EFG23330.1| DNA polymerase III, alpha subunit [Veillonella sp. 3_1_44] Length = 1135 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/1015 (36%), Positives = 614/1015 (60%), Gaps = 39/1015 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + QPA+AITD N+++A+ F ++ A G++PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGKQ 127 IGC++ + +G++ + ++LL T EGY+ L+++VS+ +L + + Sbjct: 64 IGCEVYVTEHSRFDRP-EGRSR-ERLKHLILLAETMEGYRNLVKIVSKASTEGMLYRPRA 121 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 + + ++G+I L+ G I + ++ + A++ + + + +G D ++ + Sbjct: 122 DRDLLRQY-----SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEI 176 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H + + + ++++L+ + L +VA+N+ ++ +ED +A D+ + ++ ++ DR Sbjct: 177 QNHGLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDR 236 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + D YLK+ EM +F +P A+ENT++IA RC+ LP F D+ Sbjct: 237 LKFPNDEFYLKSGDEMADLFGHIPGAIENTLKIADRCNVEFNFDEHHLPHF------DVP 290 Query: 305 KEEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E ++ + V E+ RL G +++ ++RLD+EL+VI M F YFLIV D+ Sbjct: 291 EGETSKTYLRKVCEREIPRLY------GETSEELQKRLDYELDVIGTMGFEDYFLIVWDY 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 +++A++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC Sbjct: 345 VRYAREHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++R + I YV KYG RV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ Sbjct: 405 YEKRGQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNEL 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++L + +D +V L + +KLEG+ R++STHAAG+VI PL V Sbjct: 465 G--ITLDKALQGKDLKALYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602 P+ ++ + VTQ++ IE+ GL+K DFLGL+TLT++ +L + A RG+ +DL IP Sbjct: 523 PV-QNANDEGFVTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIP 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 DD LLT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + +V Sbjct: 582 LDDKAACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVAD 641 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + +R++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK Sbjct: 642 FIDRRHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKK 701 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + + Q+E FI G+ NGI +++A +F+LL FA YGFNKSH+AAYA I+YQTA++K Sbjct: 702 KESVLKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLK 761 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HY EF+AA+MT M N++K+ + ++ N++++ P +N F V D+ I + L Sbjct: 762 AHYFPEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDDAIRFGLG 821 Query: 841 AIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK VG R I E + + + DFC RVD++ +N+R+LESL+ GA+D F +R Sbjct: 822 GIKNVGDNAIDRLIRERNEHGLYTDIVDFCKRVDNRVVNKRLLESLIRCGAMDGFQENRN 881 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957 QLL ++ Q +K+ ++F E F +E S ++ + ++E+ Sbjct: 882 QLLHMYESAQAVGAKEQKDAAMGTMSLFGDMEEAVEFIPVPNVEDLSEDD---KLKDEKE 938 Query: 958 VLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 GFY +GHPL Y L + + E+ G I ++ +K + T++ Sbjct: 939 YTGFYITGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKR 993 >gi|307692527|ref|ZP_07634764.1| DNA polymerase III DnaE [Ruminococcaceae bacterium D16] Length = 1155 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1058 (36%), Positives = 596/1058 (56%), Gaps = 59/1058 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ +SLL+GA + ++ ++ Q A+AITD ++ ++F + AGI+P Sbjct: 2 SFVHLHLHTEFSLLDGACRIQKLVQRVKDLGQEAVAITDHGVMYGVIDFYRACKGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTV-------PSIVLLVSTAEGYQRLIELVSRMYLL 122 IIGC++ + +G+T F V +VLL EGY+ L +VS+ +L Sbjct: 62 IIGCEVYV--------APRGRTRFQKVHEYDAAFSHLVLLCRNEEGYRNLSYMVSQGFL- 112 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 + RI L L+E GLI L+ G I + A++ L ++LFG D Sbjct: 113 EGFYIKPRIDLDLLRE-HCGGLIALSACLGGEIPKLLMAGDYDKAKEVALEMRELFGEDG 171 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ H + + ++ +++L +PLV TN++ +L ED E D+LM + V Sbjct: 172 YYLELQDHNIPAQKKVNEGILRLHEETGIPLVCTNDAHYLRREDAEMQDILMCIQMGKTV 231 Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 R + T + Y+K+ EM ++F EAL+NT +IA+ C+ LP F + Sbjct: 232 DDPGRMKFETQEFYVKSEEEMAALFPR--EALDNTAKIAQLCNVDFTFGKYHLPHF---Q 286 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + + G R +YR++LD+E+ +I +M F YFLI Sbjct: 287 LPEGWSDGYAYFEKLCLDGFRWRYPD-------EPAEYRKQLDYEMAMIQKMGFVDYFLI 339 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V+DFI +AK + IPVGPGRGS AGS+ +Y L ITD+DP++++L FERFLNP+R++MPD D Sbjct: 340 VSDFIAYAKGHGIPVGPGRGSAAGSMVSYCLNITDLDPMKYNLYFERFLNPERVTMPDID 399 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC RR EVI YV KYG + VAQI+TFG++ A+AA+RDVGR L MPY+ VD + K I Sbjct: 400 IDFCIRRRQEVIDYVARKYGADHVAQIVTFGTMAARAAVRDVGRVLNMPYADVDVIAKQI 459 Query: 480 PNDPA--HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 P+ P H +A+ +E+ +D V +L++ + +EG+ R+ STHAAG+VI R Sbjct: 460 PSGPGALHITLEEALKLSKPLKESYDSDYKVKKLIDTAMAIEGMPRNTSTHAAGVVITSR 519 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 P+S VP+ ++ DL VTQ+ M +E+ GL+K DFLGL+ LT+L ++ + ++ D Sbjct: 520 PVSDYVPLAKN--DDLVVTQYIMTTLEELGLLKMDFLGLRNLTVLDDAVKLVRRKEPDFD 577 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD T+ +++ T G+FQ+ESSGM G++P IED+ A+V+LYRPGP+++ Sbjct: 578 IHNIPEDDEATFRMISEGRTSGVFQMESSGMTGVCVGLKPHSIEDLTAIVALYRPGPMES 637 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I + + KN EK+ HP + P+L T G I+YQEQV+QI Q L GYSL +AD++RRAM Sbjct: 638 IPRFISCKNNPEKVTYKHPSLVPILSNTYGCIVYQEQVIQIFQQLGGYSLGQADMVRRAM 697 Query: 718 GKKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 KK ++++K++E F I+G + NGI + +A +I++ + FA+Y FNK+HA Y Sbjct: 698 SKKKVKDIEKERETFLHGDPERNIAGCAANGIPENVAQSIYDEIYDFANYAFNKAHAVCY 757 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++YQTAW K H+P E++AA +T +D+ EK+ ++ + ++++IQ++PP VN +F Sbjct: 758 ALVAYQTAWFKCHHPKEYMAALLTSVLDSSEKVAEYIAECKEWDIQLLPPDVNESETNFT 817 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V I + LAA+KGVG + ++E PF DFC R+ LNRRVLESL+ A Sbjct: 818 VSPQGIRFGLAALKGVGRSVMNAMLEERVKHGPFTDFMDFCDRMFDHDLNRRVLESLIKA 877 Query: 889 GALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 GA D G R QL+ Q LD I + + + + + + L Sbjct: 878 GAFDRMGCRRSQLMQVFGQVLDGIAASRKRNVEGQMDLFGFGGGEGESAPLPTLHLPDIP 937 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG----------IKGYEESVATIRGNN 994 E+ V G Y +GHP+D Y+ I RK G G E G Sbjct: 938 EYTPQELMTMEKEVTGLYLTGHPMDAYREIARKRGAVTIGSILNDFDGEEGPQRFRDGER 997 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +A ++ + + + TR + + +V + E F Sbjct: 998 VTVAGVIATYKTRTTRNNTLMAYVNLEDDTASMELLCF 1035 >gi|237739930|ref|ZP_04570411.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] gi|229421947|gb|EEO36994.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] Length = 1133 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/989 (38%), Positives = 595/989 (60%), Gaps = 63/989 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSLLEG S+++ L + ++A+TD N+F A+EF +KA GI+P Sbjct: 4 NFVHLNLHTEYSLLEGVNSIDSFLTRAKELGMNSLAVTDYANMFCAIEFYEKAKKMGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQS 128 IIG +L + ++ + ++ LL EGY+ L++L S +Y D G+ Sbjct: 64 IIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELYKKKDNGE-- 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFG-DRLYVNL 186 +RI L+E ++GLI L+ G I +A N S+ + + + ++F + Y+ + Sbjct: 111 LRISKGILKEY-SKGLIALSSSMKGEIGKAILMNFPSEKLDSIVDEYIEIFSKENFYLEI 169 Query: 187 QRHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Q + E++V+ LA + LVATNN ++ + YE D+++ + + Sbjct: 170 QA----NELPETKVINDKFYDLAKLKNIELVATNNVHYVDRDGYELQDIVICIQSGWKLK 225 Query: 242 QKDRPR-VTPDHYLKNRSEMV-SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 K+R R V+ + YLK++ EM S+ +A+ENT IA C+ ++ P + Sbjct: 226 DKNRKRAVSKELYLKSKEEMQRSLDERFHKAIENTNYIASLCNLEIEFGNLQFPYY---- 281 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQ------GAIAKGYHAQDYRQRLDFELNVIARMKF 353 E+ N+ +G++ L I K +D +RL++EL+VI +M + Sbjct: 282 ----------EVPNQ-YSGMDEYLKSICYENIKKIYKENLTKDILERLEYELSVIIKMGY 330 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 SGYF++V DFI +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+ Sbjct: 331 SGYFIVVWDFIAYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERI 390 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD DID C++RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L + ++D Sbjct: 391 SMPDIDIDICRERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKID 450 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 RL KL+ + +L+ + ++ D + +++++S ++E RH STHAAGI+ Sbjct: 451 RLSKLVSSFQTLEKTLKENVEVAKL---YTTDIELQKVIDLSIRIENKIRHVSTHAAGIL 507 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592 I L + VP+Y D + + TQ+ MK +E GL+K DFLGLK L+ +Q+++D++ + + Sbjct: 508 ITKEDLDRTVPIYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYK 567 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 + ++L IP DD + + +L+ + G+FQLES+G+R+ ++ ++P+ +EDI+AL++LYRP Sbjct: 568 NIDIELYKIPLDDKKVFEMLSQGDSTGVFQLESTGIRKIMKRLKPNKLEDIVALLALYRP 627 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+ + +V + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EA Sbjct: 628 GPLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEA 687 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK M + +E+FI A +N ++ A IFEL+ KFA YGFNKSH+ AYA Sbjct: 688 DLLRRAMGKKNFTIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYA 747 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +ISY TA++K HYP + AA MT E+ + + DA++ I I PP+VNTP F++ Sbjct: 748 MISYWTAYLKAHYPAFYFAAIMTSEISETGDVAYYFNDAKEHRISIYPPNVNTPSAYFEI 807 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 ++ I YSLAAIK +G A+ I+E + L++F R +N+R LE+L+ +G Sbjct: 808 KNDGISYSLAAIKNLGLNLAKKIVEDYEKYGAYTKLDEFVLRNKKNGMNKRALEALILSG 867 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVE 946 ALD +R + S+D + + K + N+F T DK L E FS++ Sbjct: 868 ALDELEGNRKEKFLSIDKVLDFVSKAPKTDEIQQMNLFGAASKTI-DKFVLTNSEDFSLD 926 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 + E+ LGFY S HPLD Y+ I+ Sbjct: 927 E---KLTKEKEFLGFYLSSHPLDKYRDIV 952 >gi|229093701|ref|ZP_04224800.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-42] gi|228689586|gb|EEL43394.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-42] Length = 1108 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAGRCRVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+LV++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEALVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|33862920|ref|NP_894480.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9313] gi|33634837|emb|CAE20822.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9313] Length = 1171 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1060 (37%), Positives = 603/1060 (56%), Gaps = 55/1060 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++ + PA+A+TD ++ A+E + A I+P Sbjct: 2 AFVPLHNHSDYSLLDGATQLPQMVKRAKELGMPALALTDHGVMYGAIELLKLCKNAEIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + + P P +V+L A GY+ L++L S +L Sbjct: 62 IIGNEMYV-------INGSIEDPQPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRG 114 Query: 127 QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + R C+ L + +EGLI+ T G I +A VA ++++FG Y Sbjct: 115 RGIFARPCIDKELLKAYSEGLIVATACLGGEIPQAILRGRIDVARDVARWYQEVFGKDFY 174 Query: 184 VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR ++V +A + L+ATN++ +LS+ D EAHD L+ V ++S Sbjct: 175 LEVQDHGSPEDRIVNVEIVNIAKELGIELIATNDAHYLSKNDVEAHDALLCVLTGKLISD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R T Y+K+ EM +F+D L +A+ NT +A + + + +PRF Sbjct: 235 EKRLRYTGTEYIKSEQEMGRLFADHLEPDVLQKAIANTAAVAEKVEEYSILGSYQMPRFP 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSG 355 E + L + GL RL +A D Y +RL +EL V+ +M F Sbjct: 295 IPE----GHSAVSYLHEVSEQGLRQRLK---LATTDPIDDHYGERLTYELGVMEQMGFPT 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D+I++A++ IPVGPGRGS AGS+ AYAL IT+IDP++ LLFERFLNP+R SM Sbjct: 348 YFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVQNGLLFERFLNPERKSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL Sbjct: 408 PDIDTDFCIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRL 467 Query: 476 CKLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 KLIP P L A I DS FRE DP V + ++++ ++EG + HAAG Sbjct: 468 AKLIPVVRGKPAKLAAMIGSDSPNAEFREKYQNDPVVTKWVDMAMRIEGTNKTFGVHAAG 527 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-A 590 +VI PL LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + Sbjct: 528 VVIAAEPLDDLVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEV 586 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 G ++D +P +D ET+ LL GIFQLES+GMRQ + ++P +EDI ++++LY Sbjct: 587 SNGERIDPDQLPTEDPETFALLARGDLEGIFQLESTGMRQIVRDLRPSSLEDISSILALY 646 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+D ++ + NRK+G+E I H ++P+LKET G+++YQEQ+M+IAQ L+GYSL Sbjct: 647 RPGPLDAGLIPKFINRKHGREAIDFAHAALEPILKETYGIMVYQEQIMKIAQDLAGYSLG 706 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 EAD+LRRAMGKK EM K + F+ GAS++G+ + IA +F+ + FA+Y FNKSH+ A Sbjct: 707 EADLLRRAMGKKKVSEMQKHRSIFVEGASRSGVDQKIADELFDQMVLFAEYCFNKSHSTA 766 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++YQTA++K HYPV ++A+ +T+ +K++++ + I++MPP VN +DF Sbjct: 767 YGAVTYQTAYLKAHYPVAYMASLLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDF 826 Query: 829 KVGDNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 +RI + L+A++ +G R I D PF SL D C R+ S LNRR LESL+ Sbjct: 827 TPAGDRILFGLSAVRNLGDGAIRQLIANRDGDGPFVSLADLCDRLPSNVLNRRGLESLIH 886 Query: 888 AGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 GALD +R QL+ L+ + +A ++R + N+F G +D+ T ++ S Sbjct: 887 CGALDAIDPESNRAQLIADLELLIHWAASRARDRLSGQGNLFDLVAGA-ADEQTSDELST 945 Query: 946 ENSSV---------RFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIRGN 993 + + E+ ++GFY S HPL + P +L +G+ E+ + Sbjct: 946 APKAAPVTDYPPTEKLRLEKELVGFYLSDHPLKQLTAPAQLLAPIGLASLEDQPDKAK-- 1003 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+ +Q TRKG R+ + + EA FP Sbjct: 1004 -VSVITMLTEMRQVTTRKGDRMAVLNIEDLTGSCEAVVFP 1042 >gi|222098066|ref|YP_002532123.1| DNA polymerase iii dnae [Bacillus cereus Q1] gi|221242124|gb|ACM14834.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1] Length = 1108 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGN-FYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPANET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + +RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI IHP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYIHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPTLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|315931919|gb|EFV10874.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 327] Length = 1088 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1001 (38%), Positives = 590/1001 (58%), Gaps = 55/1001 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + EE E N + GLE RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ E+F V + E+ +LG Y SGHPLD + Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989 >gi|57237020|ref|YP_178822.1| DNA polymerase III subunit alpha [Campylobacter jejuni RM1221] gi|57165824|gb|AAW34603.1| DNA polymerase III, alpha subunit [Campylobacter jejuni RM1221] gi|315058181|gb|ADT72510.1| DNA polymerase III alpha subunit [Campylobacter jejuni subsp. jejuni S3] Length = 1200 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1001 (38%), Positives = 589/1001 (58%), Gaps = 55/1001 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + I EE E GL+ RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLKERLK--FIDESKH-EEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTS 951 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ E+F V + E+ +LG Y SGHPLD + Sbjct: 952 GVQVNFTPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989 >gi|47565015|ref|ZP_00236058.1| DNA polymerase III, alpha subunit [Bacillus cereus G9241] gi|47557801|gb|EAL16126.1| DNA polymerase III, alpha subunit [Bacillus cereus G9241] Length = 1108 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG + Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFG-KFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPANET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDTYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ + PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSEEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|301056108|ref|YP_003794319.1| DNA polymerase III subunit alpha [Bacillus anthracis CI] gi|300378277|gb|ADK07181.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis str. CI] Length = 1108 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|217962084|ref|YP_002340654.1| DNA polymerase III DnaE [Bacillus cereus AH187] gi|229141330|ref|ZP_04269868.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST26] gi|217066627|gb|ACJ80877.1| DNA polymerase III, alpha subunit [Bacillus cereus AH187] gi|228642111|gb|EEK98404.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST26] Length = 1108 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1033 (36%), Positives = 608/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ N AE+ ++ +FG+ Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLENKESQAEEVARAYQNMFGN-FYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI IHP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYIHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPTLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|229124170|ref|ZP_04253362.1| DNA polymerase III subunit alpha [Bacillus cereus 95/8201] gi|228659472|gb|EEL15120.1| DNA polymerase III subunit alpha [Bacillus cereus 95/8201] Length = 1108 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|312144146|ref|YP_003995592.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus'] gi|311904797|gb|ADQ15238.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus'] Length = 1119 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/1025 (36%), Positives = 613/1025 (59%), Gaps = 39/1025 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL H++YSLL+GA+ + +++ K PA++ITD L+ +EF Q+A I+P Sbjct: 3 NFVHLHNHTAYSLLDGAIRIKDLIRKSKEYSLPAVSITDHGVLYGMIEFYQQAKKENIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + +N K++N+ + + +VLL EGY LI+LV++ +L +G Sbjct: 63 IIGCELY--LAEN-KLSNRNRKNY----HLVLLAENNEGYHNLIQLVTKSWL--EGFYYK 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 L ++GLI L+ G + + + +A+K + ++ +FG D ++ LQ Sbjct: 114 PRVDKELLAKHSDGLICLSACLQGEVPQLILNGNYDLAKKAVSDYQAIFGHDSFFLELQD 173 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + +Q +++L+ +PLV +N+S +L ED E D+L+A+ T + ++R Sbjct: 174 HNLKEEKEAAQGLIKLSNEENIPLVVSNDSHYLEREDSELQDILLALQTGTTIDDENRMS 233 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + ++Y K+ SEM +F DL A ENTV+IA R + L + LP + + D + Sbjct: 234 FSGQEYYYKSPSEMKKLFPDLDSAYENTVKIADRVNLELDFNHFYLPDY--PDLKDNKNP 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVADFI 364 EE L +L + A+ + A+D + +RL +EL +I M ++ YFLIV DF+ Sbjct: 292 EE----------LLEKLCKKALKERGMAEDEKAVERLQYELKIIFEMGYAAYFLIVYDFV 341 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A+ N+I VGPGRGS AGS+ AY L IT ++PL++ L+FERFLNP+R++MPD DIDF + Sbjct: 342 KYAENNDIMVGPGRGSAAGSLVAYLLKITKVNPLKYGLIFERFLNPERVTMPDIDIDFDE 401 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +R D++I YV+++YG +RVAQI TFG++ A+AA+RDVGRAL +PY +VD+ KLI + Sbjct: 402 NR-DQIIEYVRDRYGRDRVAQIGTFGTMAARAAVRDVGRALGIPYGKVDKAAKLISSRSG 460 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 SL ++ + R D + ++++ ++ +EG RH STHAAG++IG PL+++VP Sbjct: 461 IEESLN---NNKKLRNLYKEDGQIKKMIDYAKGVEGFPRHISTHAAGVIIGAEPLAEIVP 517 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603 + + + + +TQ M +E GL+K DFLGL+ LT+++ +L+ + R K+D++ IPF Sbjct: 518 LQK--QDENIITQLPMDDLEALGLLKMDFLGLRNLTVIKNTLELIESRKNEKIDINSIPF 575 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 DD Y L+T T G+FQ+ES + + ++P+ D+IA+++L RPGP+ + +V + Sbjct: 576 DDKNVYDFLSTGKTAGVFQMESYLFKSLNQRLKPERFNDLIAMLALGRPGPLGSNIVDDF 635 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 ++G+++ +HP + +L+ET G+I+YQEQVM+IA L GYS+ EAD+LRR MGKK Sbjct: 636 IAIRHGEKEADYLHPKLKAILEETFGMILYQEQVMEIASSLGGYSMGEADLLRRGMGKKK 695 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E + ++E+F+ GA NGI+ A IF+ + FA YGFNKSH+ AYA ++YQTA++K Sbjct: 696 LEIVAAEREKFVQGAVNNGIAAETAEKIFDQMEYFAGYGFNKSHSTAYAFLAYQTAYLKY 755 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLA 840 +YP EF+AA + M N +KI + + AR+ +++I+ P +N DFK GDN+I Y L Sbjct: 756 YYPAEFMAALFSSVMGNQDKIADYIKAAREIDLEILAPDINKSYHDFKAEGDNKIRYGLK 815 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIK VG+ T + A +K F S+ DF R+D LN + E+ + AGA D SR Sbjct: 816 AIKNVGSNTIYALENARKEKEFKSVVDFLKRIDMSALNIQSFEAFIKAGAFDDIVESRAA 875 Query: 901 LLQSLDNI-QKYAQWVEKNRTNKHE--NIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 LL + + + QKY + + +F E + + E + + E+ Sbjct: 876 LLINYEELYQKYNNLSRQRAQGQRSFAELFGEENKFIEEDLKYEDIKELETETILKQEKE 935 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 LG Y S HPLD Y+ + K+ I +++ G + A ++S ++ T++ +++ + Sbjct: 936 YLGIYLSAHPLDNYQHKITKLNIANISQAIKASDGEKVFTAGNIISYKEHITKRNNKMAF 995 Query: 1018 VTFSE 1022 +T S+ Sbjct: 996 LTISD 1000 >gi|206977128|ref|ZP_03238027.1| DNA polymerase III, alpha subunit [Bacillus cereus H3081.97] gi|206744613|gb|EDZ56021.1| DNA polymerase III, alpha subunit [Bacillus cereus H3081.97] Length = 1108 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGN-FYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPANET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + +RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|196032965|ref|ZP_03100378.1| DNA polymerase III, alpha subunit [Bacillus cereus W] gi|196040926|ref|ZP_03108224.1| DNA polymerase III, alpha subunit [Bacillus cereus NVH0597-99] gi|218905831|ref|YP_002453665.1| DNA polymerase III, alpha subunit [Bacillus cereus AH820] gi|228948329|ref|ZP_04110612.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195994394|gb|EDX58349.1| DNA polymerase III, alpha subunit [Bacillus cereus W] gi|196028380|gb|EDX66989.1| DNA polymerase III, alpha subunit [Bacillus cereus NVH0597-99] gi|218538695|gb|ACK91093.1| DNA polymerase III, alpha subunit [Bacillus cereus AH820] gi|228811316|gb|EEM57654.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 1108 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|32266769|ref|NP_860801.1| DNA polymerase III subunit alpha [Helicobacter hepaticus ATCC 51449] gi|32262821|gb|AAP77867.1| DNA-dependent DNA polymerase III [Helicobacter hepaticus ATCC 51449] Length = 1218 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1086 (37%), Positives = 616/1086 (56%), Gaps = 75/1086 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL +H+ YSLL+GA + + +I ++AITD N+F AL+F G+ P Sbjct: 2 SFTHLHLHTEYSLLDGANKIKFLAKRIRELGMESVAITDHGNMFGALDFYVSMKEEGLNP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + D L G + L GY+ L+ L S+ ++ + Sbjct: 62 IIGMEAYLHNGDTL-----GDKTIKQRFHLCLFAKNEIGYKNLMYLSSQSFI-EGFYYYP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPID--------RAFFFNSS--QVAEKRLLTFKKLFG 179 RI + L+E +EGL+ + G I+ R F + +VA++ L +K +FG Sbjct: 116 RINKALLRE-RSEGLVCSSACLQGEINWQLNTSNQRNVRFGAKGYEVAKEVALEYKDIFG 174 Query: 180 DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y+ L RH D+ + + Q+++L ++ ++ATN++ + +ED A +V M VA Sbjct: 175 EDFYLELMRHGINDQLFIDEQILKLGRELDIKVIATNDTHYSLQEDASAQEVAMCVAMGK 234 Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF-------------- 283 + KDR + + + Y+K+ EM +F D+PE LENT EIA++C Sbjct: 235 TFNDKDRLKHSVKEFYVKSPQEMQKLFCDVPEVLENTQEIAQKCQLHLDLKNIEIKNKHT 294 Query: 284 --ILQVHAPILPRFIEKECDDIQKEEENELRN--------------KAVAGLEVRLAQGA 327 IL + P P + + KE ++ N K GLE RL Sbjct: 295 GEILLKNTPATPPTFKHTTNYALKENLPQILNCSLESIDDAVYFAFKCRQGLEERLKH-- 352 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387 I H Y++RL+ E+ VI+ MKF GY LIV DF+ +AK+NNIPVGPGRGS AGS+ A Sbjct: 353 IPTESHPI-YKKRLEHEIEVISSMKFPGYMLIVWDFVNFAKQNNIPVGPGRGSAAGSLVA 411 Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 Y+L IT+IDPL++ LLFERFLNP+R+SMPD D+DFCQ RR E+I YV N YG VAQ+I Sbjct: 412 YSLKITNIDPLKYDLLFERFLNPERVSMPDIDMDFCQRRRGEMIEYVANTYGKFNVAQVI 471 Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ----------AIADDSR 497 TFGSL AK +RDV R L MPY+ D KLIP + ++ A +SR Sbjct: 472 TFGSLLAKGVIRDVARVLNMPYNDADAFAKLIPAELGITLTKHIGKDGKEKDGAWEKESR 531 Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP-LSQLVPMYRDVRSDLPVT 556 +E P ++ + + LEGL R+A THAA IVI + L VP+Y + + + T Sbjct: 532 IKELVEKSPLAKQVWDYALLLEGLKRNAGTHAAAIVIDSQEELWHKVPLYTNDKMNGVAT 591 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTK 615 Q++M W+E LIKFDFLGLKTLT++ +++ + +R K +D S + DD++ Y + + Sbjct: 592 QYSMNWLEPVDLIKFDFLGLKTLTVIDDAINLIKKRYEKEIDFSTMEMDDYKVYETIQSG 651 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675 TLG+FQ+ES GM+ + ++P ED++A++SLYRPGP+D I + RK+G KI + Sbjct: 652 NTLGLFQIESEGMQAIAKRLKPSNFEDVVAMISLYRPGPMDLIDDFVARKHGLVKIEYLI 711 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 ++P+LK T GVI+YQEQVMQI Q + G+SL AD++RRAMGKK +EM + K+ F G Sbjct: 712 DALEPILKPTYGVIVYQEQVMQIVQTIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFADG 771 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A K G ++ A +++E++ KFA YGFNKSHAAAY +I+YQTA++KT+Y EF+AA +T E Sbjct: 772 AQKQGYNRAKAEDLWEIIVKFAGYGFNKSHAAAYGMITYQTAYLKTYYEHEFMAAMLTSE 831 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTAR 851 + +E I K+ + + I+I+PP VN +F VG+ +I + L+AIKG+G Sbjct: 832 TNKIESIAKYIDEVKSLGIEIVPPHVNISENNFGVGEFDGVKKIIFGLSAIKGLGDAPIE 891 Query: 852 HIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 +I+E + + SLEDF +RVD KL +R LE L+ +G LD GYSR +L+ +D + Sbjct: 892 NIIEEREKNGAYKSLEDFVARVDFSKLTKRSLEPLIKSGGLDNLGYSRKSMLEYIDILCD 951 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 + K + H ++F ++ + + + + + E +G Y SGHPLD Sbjct: 952 KGREKSKAQEMIHNSLFGEDEVEINIYLPITHKGEYDIRTLLDYEYECMGIYISGHPLDD 1011 Query: 971 YKPILRKMGIKGYEES--VATIRGNNI-RLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKE 1026 +K L+ IKG +S + + N++ L V+S +++ ++K ++ G + F + + Sbjct: 1012 FKDKLK--NIKGIIKSLELENLEFNSVCMLVGKVLSIKRRISKKSNKPFGSIDFLDYGGK 1069 Query: 1027 YEANFF 1032 E F Sbjct: 1070 IEIMVF 1075 >gi|311031337|ref|ZP_07709427.1| DNA polymerase III DnaE [Bacillus sp. m3-13] Length = 1108 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1025 (36%), Positives = 616/1025 (60%), Gaps = 47/1025 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S VHL + SSYSLL ++ + ++++ ++A+TD + ++ A++F + +A I+P Sbjct: 2 SVVHLYIKSSYSLLNSSVRFSKLVERANELGLNSLALTDEDVMYGAVDFYKACKSANIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG L + L G++ +P ++LL +G+ L++L S + Q K Sbjct: 62 IIGLTLSV-----LSDGEDGESTYP----VILLAKNNQGFTNLMKLSSVV----QTKSPQ 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + WL+ T+GLI + GS + + N Q AE L F++ D LY+ + R+ Sbjct: 109 GVPKRWLKHY-TKGLIAILSGSESELAQ----NEEQTAEAYLEMFEQ---DCLYLGIDRN 160 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 R +S+ + ++ ELP+VA + +L +ED ++ L ++ T + + P+ Sbjct: 161 SAESR-EQSETTRKRHS-ELPIVAMSKVHYLHKEDVFVYECLRSIKQGTKL--ESLPKEA 216 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 PD YL+ +EM +F D+P+ALENT +I+ +C L+ LP + E ++ + Sbjct: 217 PD-YLRATNEMTQLFEDIPDALENTWKISNQCHVELEFGQAALPSYPVPE----EENADE 271 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L GL R+ G AQ+Y++RL +EL VI MKFS YFLIV DF+ +A+ Sbjct: 272 YLEKICWEGLHKRV-------GEPAQEYKERLQYELQVIKGMKFSDYFLIVWDFMYYARN 324 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS AGS+ AY+L ITD+DP+ LLFERFLNP+R++MPD DIDF ++RDE Sbjct: 325 AGILTGPGRGSAAGSLVAYSLFITDVDPIEHDLLFERFLNPERITMPDIDIDFQDNKRDE 384 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VIRYV KYG VAQIITFG+L AKAA RDV +AL + +++ + K+IP+ P ++L Sbjct: 385 VIRYVAEKYGQLHVAQIITFGTLAAKAAWRDVAKALNLSGKELEMISKMIPSRPG--ITL 442 Query: 490 QAI-ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 A ++ + + A R + +QK+EGL RH+STHAAG+VI +PL++L+P+ + Sbjct: 443 DAAYQENEKLQSAINETKERKRAFQTAQKIEGLPRHSSTHAAGVVITHKPLTELIPI-QA 501 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 + D+ +TQ+ M+ +E+ GL+K DFLGL+ LT++Q S+ +R K + IP DD T Sbjct: 502 GQQDIYLTQYTMETLEELGLLKMDFLGLRNLTMIQ-SIRHQVKRETKQHIEEIPLDDAAT 560 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + LL+ T GIFQLES GM++ L ++P +EDI+A+ +LYRPGP++ I ++ RK+G Sbjct: 561 FRLLSEGDTSGIFQLESPGMKKVLTKLKPSNLEDIVAVNALYRPGPMEQIPLFIERKHGL 620 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 +K+ HP + P+L++T GVI+YQEQ+MQIA +++G+SL EAD+LRRA+GKK K+ + K+ Sbjct: 621 KKVEYPHPDLIPILEKTFGVIVYQEQIMQIAAVMAGFSLGEADLLRRAVGKKKKDVLAKE 680 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 +E F+ G K G + +A ++++L+ +FADYGFN+SHA AY++ISY+ A++K +YP F+ Sbjct: 681 REHFVEGCLKKGYDEKVANSVYDLIVRFADYGFNRSHAVAYSMISYELAYLKANYPKIFM 740 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 A ++ M + +K+ ++ + ++ IQ++PPS+N + F+V + I +SL IKGVG Sbjct: 741 ATLLSSVMGSEQKLSQYITETKRKGIQVLPPSINKSGIAFQVEEAGIRFSLLTIKGVGVQ 800 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 + ++E K F L DFC+R S K+NR+ +E L+F G++D F R LL +LD Sbjct: 801 AIKALIEERRKKEFSDLFDFCNRASS-KVNRKTIEMLIFGGSMDEFEEDRATLLATLDVA 859 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 ++A+ V + N+ + E + +E + + + + E+ LGFY S HP Sbjct: 860 MQHAELVMPSDDNQIDFFMEEEFNIKPKYVKVEPLQL---TEQLQLEKEALGFYLSKHPT 916 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + + +G + + R+ + + +++ +T+KG + ++T S+ + + E Sbjct: 917 EPFAAYFQ-LGGGCLILDLPSTGARKARVGSFISNERVIRTKKGDLMAFLTLSDQSGDLE 975 Query: 1029 ANFFP 1033 A FP Sbjct: 976 AVAFP 980 >gi|228935912|ref|ZP_04098722.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823680|gb|EEM69502.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 1108 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|188588146|ref|YP_001922465.1| DNA polymerase III DnaE [Clostridium botulinum E3 str. Alaska E43] gi|188498427|gb|ACD51563.1| DNA polymerase III subunit alpha [Clostridium botulinum E3 str. Alaska E43] Length = 1202 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1008 (38%), Positives = 584/1008 (57%), Gaps = 59/1008 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL +H+ YSLL+G+ + I+ K +IAITD L+ ++F + A G Sbjct: 15 KEKDFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAAIEYG 74 Query: 67 IQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 I+PI+GC++ + + +K ++ + + +VLLV GY+ L+++VS + + Sbjct: 75 IKPILGCEVYVAGKSMKIKQPDKDNSTY----HLVLLVKNEIGYRNLMKIVSTASI-EGF 129 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L+ ++G+I L+ G + + + A++ L +K++F + Y+ Sbjct: 130 YYKPRVDHEYLKA-HSDGIIALSACLGGEVQSHELKGNYEKAKETALLYKEIFKENFYLE 188 Query: 186 LQRHRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H G D R+ + + EL PLVATN+ ++ ++ Y++HD+LM + V Sbjct: 189 IQNH-GMDEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDV 247 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R R D YLK+ EM +FS +PEALENTV+I+ +C++ + H LP+F E + Sbjct: 248 NRRRYPSDQFYLKSPEEMWEMFSYIPEALENTVKISEQCNYEYKFHESKLPKFPLPEGE- 306 Query: 303 IQKEEENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNV 347 E N L+N GL R + +K A++ RL++EL + Sbjct: 307 ---EPYNYLKNTCYMGLIERYEEFKEFRGKDLNYDKLDDLKSKNDSAKELIDRLEYELQI 363 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M + YFLIV DFI++A N IP GPGRGS AGS+ AY L IT IDP+++SL+FERF Sbjct: 364 IKQMGYIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERF 423 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPD D DFC +RR EVI YV KYG + V+QIITFG++ A+A +RDVGRA+ Sbjct: 424 LNPERVSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNY 483 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 YS+VD++CK+IP + +A+ + +E D V L+++S+ LEGL RH+ST Sbjct: 484 SYSEVDKICKMIPTMLGITIE-KALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSST 542 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAG+VI PL Q VP+ ++ ++ VTQF M +E+ GL+K DFLGL+TLT++ ++L Sbjct: 543 HAAGVVIASTPLVQYVPLQKN--DEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALK 600 Query: 588 FLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + + R + +DL I FDD E Y ++ T G+FQLES GM ++ ++PD +EDIIA Sbjct: 601 IIKENRNIDIDLDKIDFDDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAG 660 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 +SLYRPGP+ I Y K EK+ P ++ +L T GV++YQEQVM+I + L+GYS Sbjct: 661 ISLYRPGPMAEIPRYIECKRNPEKVKYEAPELEEILDVTYGVMVYQEQVMEIVRKLAGYS 720 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAK 755 + +D++RRAM KK + M+++++ FI G +NGIS+ A IF+ + Sbjct: 721 MGRSDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVIVPGCIRNGISEEAANKIFDNMMD 780 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSHAAAYAV+ YQTA++ +YPVE +AA + M + EK+ + A + IQ Sbjct: 781 FASYAFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQ 840 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874 ++PP +N F V I + LAAIK VG +++ +K FDSL DF S++D Sbjct: 841 VLPPDINESFAKFTVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDL 900 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 +N+R +ESL+ +G D F R +LL Y + V+ ++ NI Sbjct: 901 SAINKRTIESLIKSGTFDSFKIYRSKLLAV------YEKMVDSISNDRKRNIDGQISLFA 954 Query: 935 SDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILR 976 SD I + + N + F+ E+ + G Y SGHPLD Y L+ Sbjct: 955 SDDIYVPEIEYPNIN-EFDKRSLLTMEKEMTGLYISGHPLDDYAQSLK 1001 >gi|297621741|ref|YP_003709878.1| DNA polymerase III, alpha subunit [Waddlia chondrophila WSU 86-1044] gi|297377042|gb|ADI38872.1| DNA polymerase III, alpha subunit [Waddlia chondrophila WSU 86-1044] Length = 1236 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1029 (38%), Positives = 598/1029 (58%), Gaps = 68/1029 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L VHS YS+L+ + S+ I K PA+A+TD NLF A++F + G++PI Sbjct: 2 FVPLHVHSQYSILDASASVKAIAAKAKEFGMPAVALTDHGNLFGAVDFYKSCKGNGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ I N ++ + + LL EGY L L SR +L + R Sbjct: 62 IGCEVYI--APNSRLEKKKERGERAAFHQTLLAKNDEGYHNLCALSSRGFL-EGFYYFPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 I + L+E + GLI L+G S + +A + ++ + ++FG+ Y+ LQRH Sbjct: 119 IDMELLKE-RSRGLICLSGCMSSKLSQAILDGAGDECDRLADWYLEVFGEDFYIELQRHP 177 Query: 190 ------------------RGYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDY 225 + Y Y E Q ++++A + VATN+S ++ D+ Sbjct: 178 MSEASLHEGGMYQESWLIQQYQGYIEKQNRLNDALLEIAERKGILYVATNDSHYIERSDW 237 Query: 226 EAHDVLMAVAHSTVV----------------SQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269 +AH+VL+ V V + K R + + Y K+ EM +F DLPE Sbjct: 238 QAHEVLLNVQSGEPVEIWEKDSLGNPKFRVPNPKRRTYSSHEFYFKSPDEMGELFKDLPE 297 Query: 270 ALENTVEIARRCSFILQV---HAPI-LPRFIEK-ECDDIQKEEENE--LRNKAVAGLEVR 322 AL NT+ IA +C+ L H P+ +P IE E D ++ E E LR G+ R Sbjct: 298 ALSNTLAIADKCTMELDFETKHYPVYVPPSIENTEYTDAERVESVEKFLRQLCAEGIPKR 357 Query: 323 LAQGAIAKG---YHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375 + K Y +D +RL+ E++VIA Y LIV DFI WAK + IPVG Sbjct: 358 YTPERLEKVKEVYPDRDPLEVVHERLEEEMSVIAPKGMCDYLLIVWDFINWAKNHGIPVG 417 Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435 PGRGSGAGS+ Y + ITDI+PLRF+L FERF+NP+R+S PD D+D C DRR +VI+Y Sbjct: 418 PGRGSGAGSIVLYLIGITDIEPLRFNLFFERFINPERLSYPDIDVDICMDRRGDVIQYTL 477 Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIAD 494 +KYG + VAQIITFG+++AK LRDVGR L +P ++V+ + KL+P+D ++L+ A+ Sbjct: 478 DKYGKDNVAQIITFGTMKAKMVLRDVGRVLSVPLAKVNEIAKLVPDDLN--ITLETALEK 535 Query: 495 DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554 D R+ D RL+++ +KLEG R+ HAAGI+I PL +P+ +++P Sbjct: 536 DHDLRQLYEQDEETRRLVDLGKKLEGSIRNTGIHAAGIIICGDPLVNHIPVCVAKDAEMP 595 Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLT 613 TQ++MK E+ G++K DFLGLKTLT +Q ++ + +R G ++D +P D+ + ++LL Sbjct: 596 ATQYSMKPAEQVGMLKVDFLGLKTLTAIQTCVNAIKERVGEQIDWVNLPLDNEKAFNLLN 655 Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673 TLG+FQLES GM+ + D E+IIA+ +LYRPGP+D I + NRK+G+E+I Sbjct: 656 QGKTLGVFQLESGGMQDLARQLHLDKFEEIIAVSALYRPGPMDMIPSFINRKHGREEIDY 715 Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733 HP + +L ET G+++YQEQVMQIAQ L+ YSL E DVLRRAMGKK E+M Q+E+F Sbjct: 716 DHPWMKEILAETYGIMVYQEQVMQIAQKLANYSLGEGDVLRRAMGKKDAEQMAAQREKFR 775 Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793 GA +NGIS+ +++NIF+ + KFA YGFNKSHAAAY+ I+Y TA++K +YP E++AA MT Sbjct: 776 LGALENGISENVSMNIFDKMEKFAAYGFNKSHAAAYSYIAYVTAFLKANYPEEWMAALMT 835 Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853 + ++ K+ KF ++ + I+++PP VN F I ++++ IKGVGT+ I Sbjct: 836 CDRHDLTKLSKFIRECQAMQIKMLPPDVNEAGTTFMASKEGIRFAMSGIKGVGTSVVEAI 895 Query: 854 M-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912 + E F+SL F R+DS K+ ++V+E+LV AG D G+SR QL S++ + + A Sbjct: 896 VAEREKGGRFESLYQFIKRIDSSKVGKKVIENLVEAGCFDFTGWSRDQLRMSVEPMFESA 955 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLE--KFSVENSSVR-FENEQRVLGFYFSGHPLD 969 +K ++F G ++ + E K ++ S + + E+ +LGF+ +GHP++ Sbjct: 956 MKEKKEEKAGVRSLF-ELMGENNENLFAEPPKVNMPTPSRQIYLKEKELLGFFLTGHPMN 1014 Query: 970 VYKPILRKM 978 +K IL ++ Sbjct: 1015 SFKDILERL 1023 >gi|52140905|ref|YP_085924.1| DNA polymerase III DnaE [Bacillus cereus E33L] gi|51974374|gb|AAU15924.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L] Length = 1108 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165 Query: 191 GYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + + + + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPVFMSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHAEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|283953915|ref|ZP_06371444.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni 414] gi|283794520|gb|EFC33260.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni 414] Length = 1200 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1007 (39%), Positives = 598/1007 (59%), Gaps = 67/1007 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGIEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFG 179 RI L+E +EGLI + G + +R F + + A++ L +KK+F Sbjct: 117 RINKKLLEEY-SEGLICSSACLQGEVNWHLNTYNERNVRFGAKGYEAAKEAALWYKKVFK 175 Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y + RH G R + +++L+ + ++ATN++ + ++ AH+V M +A Sbjct: 176 DDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKDRAAAHEVFMCIAMGK 235 Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295 ++ R R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 236 KLNDPGRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKF 295 Query: 296 ---IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDF 343 KE + I EE E N + GLE RL I + H ++Y+QRL+ Sbjct: 296 TREYAKEYNIILPEETKEFSFDNDDIVFEELCKKGLEERLK--FINESKH-EEYKQRLEV 352 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E+N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLL Sbjct: 353 EINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLL 412 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 413 FERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVAR 472 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR------LLEISQK 517 M D L KL+P + L+ D + +E ++ + ++R + E ++ Sbjct: 473 VCDMSIQDADELAKLVPEE------LKITLDAAYEKEPKIKE-FIERHHKGFEVWEYAKA 525 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLG 575 LEGL R+A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLG Sbjct: 526 LEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLG 585 Query: 576 LKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 LKTLT++ ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ Sbjct: 586 LKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNAR 645 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 ++P+ EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQ Sbjct: 646 LKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIKYPFDSLEKVLEPTYGVIVYQ 705 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQI Q++ G+SL ADV+RRAMGKK E+M K K F GA K G ++T A +++EL Sbjct: 706 EQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKIDFADGAEKQGYNRTEAEDLWEL 765 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ Sbjct: 766 IVKFAGYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKM 825 Query: 813 NIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868 NI+++PPS+N +F G + I Y L AIK VG +++EA + F + DF Sbjct: 826 NIKLLPPSINKAIREFSALEQDGRDAIIYGLGAIKSVGIPAVENLLEARQNGEFKDINDF 885 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 ++D K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F Sbjct: 886 LGKIDPTKVNRRTLESLIKAGAFDEFGFTRKALFDNMENLSEVSRKMAEVRKNAASSLFG 945 Query: 929 HEKGTFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 E+ T ++ E+F V + E E+ +LG Y SGHPLD + Sbjct: 946 EEELTSGVQVNFIPKNEEFEVME---KLEYEKEILGIYVSGHPLDRF 989 >gi|206969546|ref|ZP_03230500.1| DNA polymerase III, alpha subunit [Bacillus cereus AH1134] gi|206735234|gb|EDZ52402.1| DNA polymerase III, alpha subunit [Bacillus cereus AH1134] Length = 1108 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 D +YLK+ EM ++FS PE ++NT++IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEVIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL R + K H + RL+ ELNVI+RM FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLRKRYGE---PKEVHIK----RLNHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + +L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKSILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 + +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|75760293|ref|ZP_00740343.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492203|gb|EAO55369.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1108 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/1033 (36%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL R G + + +RL+ ELNVI+RM FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLRKRY-------GAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAERVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D F SR L +S Sbjct: 810 IGMATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFXVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 + +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 IKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|30264675|ref|NP_847052.1| DNA polymerase III DnaE [Bacillus anthracis str. Ames] gi|47530144|ref|YP_021493.1| DNA polymerase III DnaE [Bacillus anthracis str. 'Ames Ancestor'] gi|49187493|ref|YP_030746.1| DNA polymerase III DnaE [Bacillus anthracis str. Sterne] gi|65321971|ref|ZP_00394930.1| COG0587: DNA polymerase III, alpha subunit [Bacillus anthracis str. A2012] gi|165869605|ref|ZP_02214263.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0488] gi|167634005|ref|ZP_02392328.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0442] gi|167638118|ref|ZP_02396396.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0193] gi|170685920|ref|ZP_02877143.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0465] gi|170705551|ref|ZP_02896015.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0389] gi|177651072|ref|ZP_02933903.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0174] gi|190569023|ref|ZP_03021923.1| DNA polymerase III, alpha subunit [Bacillus anthracis Tsiankovskii-I] gi|227817389|ref|YP_002817398.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. CDC 684] gi|229600791|ref|YP_002868883.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0248] gi|254687412|ref|ZP_05151268.1| DNA polymerase III DnaE [Bacillus anthracis str. CNEVA-9066] gi|254724975|ref|ZP_05186758.1| DNA polymerase III DnaE [Bacillus anthracis str. A1055] gi|254736712|ref|ZP_05194418.1| DNA polymerase III DnaE [Bacillus anthracis str. Western North America USA6153] gi|254741749|ref|ZP_05199436.1| DNA polymerase III DnaE [Bacillus anthracis str. Kruger B] gi|254754653|ref|ZP_05206688.1| DNA polymerase III DnaE [Bacillus anthracis str. Vollum] gi|254757485|ref|ZP_05209512.1| DNA polymerase III DnaE [Bacillus anthracis str. Australia 94] gi|30259350|gb|AAP28538.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. Ames] gi|47505292|gb|AAT33968.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49181420|gb|AAT56796.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. Sterne] gi|164714434|gb|EDR19953.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0488] gi|167513935|gb|EDR89303.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0193] gi|167530806|gb|EDR93508.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0442] gi|170129676|gb|EDS98539.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0389] gi|170670384|gb|EDT21124.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0465] gi|172082898|gb|EDT67960.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0174] gi|190559805|gb|EDV13790.1| DNA polymerase III, alpha subunit [Bacillus anthracis Tsiankovskii-I] gi|227004404|gb|ACP14147.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. CDC 684] gi|229265199|gb|ACQ46836.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0248] Length = 1108 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DAKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|170758690|ref|YP_001788703.1| DNA polymerase III DnaE [Clostridium botulinum A3 str. Loch Maree] gi|169405679|gb|ACA54090.1| DNA polymerase III, alpha subunit [Clostridium botulinum A3 str. Loch Maree] Length = 1185 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1078 (35%), Positives = 621/1078 (57%), Gaps = 61/1078 (5%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 Q+ EK P ++ L H+ YSLL+ + + +++ K +IAITD ++ ++F ++ Sbjct: 4 NQFDEKKPEWISLHQHTEYSLLDSSAKIADLIKKAKEFGMKSIAITDHGVMYGCVDFYKE 63 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 A GI+PIIGC++ + ++ + Q K +VLLV GY+ L+E+VS+ + Sbjct: 64 AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV 120 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + R+ +L++ +EGLI L+ G + + + AE+ L +K +F + Sbjct: 121 -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFEEG 178 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ H ++ + ++ +V+++ ++PLVATN+ ++ +EDY++HD+L+ + V Sbjct: 179 FYLELQYHGMEEQLKVNEALVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298 +++R R D YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E+ Sbjct: 239 EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298 Query: 299 ECDDIQKEEENELRNKAVAGLEVR-----------------LAQGAIAKGYHAQDYRQRL 341 D + LR GL +R L G K A D +RL Sbjct: 299 GVDPYEY-----LREICFKGLFLRYEVLKDFIDNPFSIDEVLVYGDENK--EAFDLIERL 351 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 ++EL++I +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++ Sbjct: 352 NYELSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYN 411 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 L+FERFLNPDR+SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+A +RDV Sbjct: 412 LIFERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDV 471 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 GRA+ PY++VDR+ K+IP+ + +A+ + +E + V L+++++ LEGL Sbjct: 472 GRAMNYPYAEVDRIAKMIPSVLNITID-KALELNPELKETYDDEERVKELIDVARALEGL 530 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 RH STHAAG+VI +PL VP+ ++ S VTQF M +E+ GL+K DFLGL+TLT+ Sbjct: 531 PRHTSTHAAGVVIASQPLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTV 588 Query: 582 LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 ++ ++ + + +G+ +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD + Sbjct: 589 MRDAVRIIRENKGIDIDLDNIDFEDKEVYKMIGQGQTVGVFQLESAGMTSFMKELKPDSL 648 Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 EDIIA +SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + Sbjct: 649 EDIIAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVR 708 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFEL 752 L+GYS+ +D++RRAM KK + M++++ FI G NGI + +A N+F+ Sbjct: 709 DLAGYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNGDEGVKGCINNGIDENVANNLFDS 768 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A+ Sbjct: 769 MMDFASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTL 828 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871 I+I+ P++N +F V DNRI + L A+K VG +I+ + K F L DF ++ Sbjct: 829 GIEIVAPNINESYSNFTVKDNRIIFGLTAVKNVGERGIDNIVLSREQKGNFTDLSDFFNK 888 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 VD+ +N+R++ESL+ AGA DC R ++L + I Q ++N N+F Sbjct: 889 VDTSIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIM 948 Query: 932 GTFSDKITLEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------K 977 + ++ ++ ++ + E+ + G YFSGHPL+ Y+ L+ K Sbjct: 949 DNKESSMDIKYPNINEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTNHHISDIISK 1008 Query: 978 MGIKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++G ++V++I+ G+ + + M+ +K TR + ++ + E FP Sbjct: 1009 ESLEGNLVDTVSSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|168178944|ref|ZP_02613608.1| DNA polymerase III, alpha subunit [Clostridium botulinum NCTC 2916] gi|226950824|ref|YP_002805915.1| DNA polymerase III DnaE [Clostridium botulinum A2 str. Kyoto] gi|182670052|gb|EDT82028.1| DNA polymerase III, alpha subunit [Clostridium botulinum NCTC 2916] gi|226842287|gb|ACO84953.1| DNA polymerase III, alpha subunit [Clostridium botulinum A2 str. Kyoto] Length = 1185 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/1076 (35%), Positives = 625/1076 (58%), Gaps = 57/1076 (5%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 Q+ EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++ Sbjct: 4 NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 A GI+PIIGC++ + ++ + Q K +VLLV GY+ L+E+VS+ + Sbjct: 64 AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV 120 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + R+ +L++ +EGLI L+ G + + + AE+ L +K +F + Sbjct: 121 -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEG 178 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ H ++ + ++ +V+++ ++PLVATN+ ++ +EDY++HD+L+ + V Sbjct: 179 FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298 +++R R D YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E+ Sbjct: 239 EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298 Query: 299 ECDDIQKEEENELRNKAVAGLEVR--LAQGAIAKGY-------------HAQDYRQRLDF 343 D + LR GL +R + + I K + A D +RL++ Sbjct: 299 GVDPYEY-----LRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGNENKEAFDLIERLNY 353 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL++I +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+ Sbjct: 354 ELSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLI 413 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+SMPD D DFC +RR EVI YV KYG E V+QIITFG++ A+A +RDVGR Sbjct: 414 FERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGR 473 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 A+ PY++VDR+ K+IP ++ +A+ + +E + V L+++++ LEGL R Sbjct: 474 AMNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEVYDNEERVRELIDVARALEGLPR 532 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 H STHAAG+VI +PL VP+ ++ S VTQF M +E+ GL+K DFLGL+TLT+++ Sbjct: 533 HTSTHAAGVVIASQPLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMR 590 Query: 584 KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ + + + + +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +ED Sbjct: 591 DAVRIIKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLED 650 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIA +SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L Sbjct: 651 IIAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDL 710 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLA 754 +GYS+ +D++RRAM KK + M++++ FI G NGI + +A ++F+ + Sbjct: 711 AGYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMM 770 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A+ I Sbjct: 771 DFASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGI 830 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 +I+ P++N +F V DNRI + L A+K VG +I+ + K F L DF ++VD Sbjct: 831 EIIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVD 890 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + +N+R++ESL+ AGA DC R ++L + I Q ++N N+F Sbjct: 891 TSIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDN 950 Query: 934 FSDKITLEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------KMG 979 + ++ +++ ++ + E+ + G YFSGHPL+ Y+ L+ K Sbjct: 951 KESSMDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKES 1010 Query: 980 IKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++G +++++I+ G+ + + M+ +K TR + ++ + E FP Sbjct: 1011 LEGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|196047476|ref|ZP_03114687.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB108] gi|225866581|ref|YP_002751959.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB102] gi|196021691|gb|EDX60387.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB108] gi|225787407|gb|ACO27624.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB102] Length = 1107 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1033 (36%), Positives = 609/1033 (58%), Gaps = 62/1033 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI--------FSEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 106 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 107 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHA 164 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 165 IQDELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 224 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 225 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 278 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 279 NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 332 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 392 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 449 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 450 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 509 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 510 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 568 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 569 DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 628 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 629 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 688 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 689 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 748 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 749 LEFMTALLSSAIGNEDKIMQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 808 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 809 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 868 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 869 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 911 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 912 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 970 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 971 CDQNDEMEAVLFP 983 >gi|322807697|emb|CBZ05272.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065] Length = 1185 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/1076 (35%), Positives = 625/1076 (58%), Gaps = 57/1076 (5%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 Q+ EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++ Sbjct: 4 NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 A GI+PIIGC++ + ++ + Q K +VLLV GY+ L+E+VS+ + Sbjct: 64 AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSKASV 120 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + R+ +L++ +EGLI L+ G + + + AE+ L +K +F + Sbjct: 121 -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEG 178 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ H ++ + ++ +V+++ ++PLVATN+ ++ +EDY++HD+L+ + V Sbjct: 179 FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298 +++R R D YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E+ Sbjct: 239 EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298 Query: 299 ECDDIQKEEENELRNKAVAGLEVR--LAQGAIAKGY-------------HAQDYRQRLDF 343 D + LR GL +R + + I K + A D +RL++ Sbjct: 299 GVDPYEY-----LRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNY 353 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL++I +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+ Sbjct: 354 ELSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLI 413 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+SMPD D DFC +RR EVI YV KYG E V+QIITFG++ A+A +RDVGR Sbjct: 414 FERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGR 473 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 A+ PY++VDR+ K+IP ++ +A+ + +E + V L+++++ LEGL R Sbjct: 474 AMNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEVYDNEERVRELIDVARALEGLPR 532 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 H STHAAG+VI +PL VP+ ++ S VTQF M +E+ GL+K DFLGL+TLT+++ Sbjct: 533 HTSTHAAGVVIASQPLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMR 590 Query: 584 KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ + + + + +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +ED Sbjct: 591 DAVRIIKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLED 650 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIA +SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L Sbjct: 651 IIAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDL 710 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLA 754 +GYS+ +D++RRAM KK + M++++ FI G NGI + +A ++F+ + Sbjct: 711 AGYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMM 770 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A+ I Sbjct: 771 DFASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGI 830 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 +I+ P++N +F V DNRI + L A+K VG +I+ + K F L DF ++VD Sbjct: 831 EIIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVD 890 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + +N+R++ESL+ AGA DC R ++L + I Q ++N N+F Sbjct: 891 TSIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDN 950 Query: 934 FSDKITLEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------KMG 979 + ++ +++ ++ + E+ + G YFSGHPL+ Y+ L+ K Sbjct: 951 KESSMDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKES 1010 Query: 980 IKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++G +++++I+ G+ + + M+ +K TR + ++ + E FP Sbjct: 1011 LEGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|229180923|ref|ZP_04308258.1| DNA polymerase III subunit alpha [Bacillus cereus 172560W] gi|228602480|gb|EEK59966.1| DNA polymerase III subunit alpha [Bacillus cereus 172560W] Length = 1105 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/1032 (36%), Positives = 611/1032 (59%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+I Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 + + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QAELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 224 DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR GL R + K H + RL+ ELNVI+RM FS YFLIV DF+++A Sbjct: 281 ---LRRVCEEGLRKRYGE---PKEVHIK----RLNHELNVISRMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 808 GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ VLGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|313895480|ref|ZP_07829036.1| DNA polymerase III subunit alpha [Selenomonas sp. oral taxon 137 str. F0430] gi|312975606|gb|EFR41065.1| DNA polymerase III subunit alpha [Selenomonas sp. oral taxon 137 str. F0430] Length = 1130 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1037 (37%), Positives = 602/1037 (58%), Gaps = 36/1037 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA + ++ + +IAITD ++ A+ F ++A A GI P Sbjct: 2 SFVHLHVHTEYSLLDGASRIKELVQRTKELGMDSIAITDHGVMYGAIAFYKEAMAQGIHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + Q + + ++LL GY+ L+ LVS + ++ Sbjct: 62 IIGCEVYVAPQSRHERAEVDGVRYY---HLILLAENEIGYRNLVRLVS-LANIEGYYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ EG+I L+ +G I R+ + ++ L + +FG D ++ LQ Sbjct: 118 RVDKDLLRQY-HEGIIALSACVAGEIPRSILRGDPERTDEILAEYVDIFGRDNFFLELQD 176 Query: 189 HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + ++ L+ H++ LVATN+ ++ ED E HD+L+ V ++ +R R Sbjct: 177 HGLPEEKTVNHALRDLSKKHDIGLVATNDIHYVRAEDSEFHDILLCVQTGRTINDPNRMR 236 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDI 303 + PD+YLK+ +EM ++F D P A+ENT +IA RC ++ P P EK DD Sbjct: 237 FSGPDYYLKSEAEMTALFHDYPGAVENTAKIAARCRVDFTFGELQLPFYP-IPEKFADD- 294 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR L R ++ + R RLD+EL VI M ++ YFLIV DF Sbjct: 295 ----DAYLRTLCEERLPERYSE-------ITNEIRSRLDYELGVIHGMGYASYFLIVWDF 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +A+ + + VGPGRGS AGS+ AY L IT+IDPLR++LLFERFLNP+R+SMPD DIDF Sbjct: 344 INYARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFD 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 R VI YV+ +YG + VAQI TFG++ AK A+RDVGR L+M +S+V + KL+P++ Sbjct: 404 DINRGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVGRVLEMSFSEVSNITKLVPSEL 463 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ + + FR D SV R++++++K+EGL R+ S HAAG+VI PL+ V Sbjct: 464 NITID-RALKESADFRRLYDEDESVRRVIDLARKIEGLPRNTSIHAAGVVIAKEPLTNHV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIP 602 P++ + VT+F+ +E GL+K DFLGL+TL++++ +L + G+ +D+ IP Sbjct: 523 PVW--ISEGTLVTEFDKDDVEALGLLKMDFLGLRTLSIIEDALKNIRTSHGIDIDIDNIP 580 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 +D T +L T +FQ+ES+GM ++ +QP D+I V+LYRPGP+ + +V Sbjct: 581 LEDDLTAQMLCDGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTD 640 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + + +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK Sbjct: 641 FIDGLHGKKEVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKK 700 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + QKE F++G + NGI +A +IF+LL FADYGFNKSH+A+Y ++++QTA++K Sbjct: 701 KHALLMAQKESFLAGCANNGIDAPLANHIFDLLTHFADYGFNKSHSASYGLLAWQTAYLK 760 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEF+A +T MD +KI + + Q I+I+PP +N+ F + I + LA Sbjct: 761 AHYPVEFMAGVLTSIMDKTDKIPVYIRLCHQMKIRILPPDINSSAATFSIESGAIRFGLA 820 Query: 841 AIKGVG---TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 A++ VG H+ E PF SL DFC+RVD + LN+R +ESL+ GA D G Sbjct: 821 AVRNVGENAIAVLEHVREEGG--PFRSLVDFCTRVDLRTLNKRAIESLIKCGAFDSLGID 878 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQ 956 R LL SL+ A +++ + +F + +I + + R E+ Sbjct: 879 RNHLLASLNAAVTDAARRQRDLLSGQIGLFGDDAMAEVQQIGDFDDVPLCTPRERLTWEK 938 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 GFY +GHPL+ Y+ L + G + +R+ ++ S ++ T+KG + Sbjct: 939 EATGFYITGHPLEDYQETLSHLQPIGQIAAAVQRDRQLMRVGGILTSTKRFTTKKGDTML 998 Query: 1017 WVTFSEPAKEYEANFFP 1033 + + E FP Sbjct: 999 FADLEDFTGTLEVTVFP 1015 >gi|49478699|ref|YP_038648.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330255|gb|AAT60901.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1108 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1033 (36%), Positives = 607/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +F D Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-DNFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHAEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|224827306|ref|ZP_03700398.1| DNA polymerase III, alpha subunit [Lutiella nitroferrum 2002] gi|224600481|gb|EEG06672.1| DNA polymerase III, alpha subunit [Lutiella nitroferrum 2002] Length = 1147 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1041 (37%), Positives = 586/1041 (56%), Gaps = 40/1041 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++HS +S+ +G + L++ + + PAI ++D NLF ++F + GI+ Sbjct: 4 PRFVHLRLHSEFSVYDGIVRLDDAVKRAKQHGMPAIGMSDLMNLFGMVKFYKACRGNGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+ I D+ ++ ++L GY RL +L+++ L +Q + Sbjct: 64 PIVSVDALISNDDDRDKPSR----------LLLTAKNRAGYLRLCDLLTQAVLHNQYRGR 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL+ LI L+G G + A VAE+R + LF D Y+ +QR Sbjct: 114 AELKREWLENGDNSQLICLSGAHLGDVGMALANGQRDVAERRARYWAGLFPDNFYLEVQR 173 Query: 189 HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 D + VVQ LA LP+VAT+ F+ +D++AH+ + +A + K Sbjct: 174 ---LDNPQIEGVVQQTLWLAGETGLPVVATHPIQFMDPDDFKAHEARVCIAEGYTLGDKR 230 Query: 245 RPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ + Y + EM+ F D+PEALEN+VEIARRC+ +Q+ LP F E + Sbjct: 231 RPKNFAECQYFLSTEEMIERFHDIPEALENSVEIARRCNITVQLGKNYLPDFPTPEGMTL 290 Query: 304 QKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 ++ L + + GLE RL + + Y RL E + I +M F GYFLIV Sbjct: 291 ----DDYLVHLSKEGLETRLEKLYPDPEVRAAERPRYDARLKIECDTIVQMGFPGYFLIV 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI WAK N PVGPGRGSGAGS+ A++L ITDIDPL ++LLFERFLNP+R+SMPDFD+ Sbjct: 347 ADFIVWAKNNGCPVGPGRGSGAGSLVAFSLGITDIDPLAYALLFERFLNPERVSMPDFDV 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQD R VI YV+ KYG E V+QI TFG++ AKA +RDVGR L +PY D + KLIP Sbjct: 407 DFCQDNRYRVIEYVRQKYGAEAVSQIATFGTMAAKAVVRDVGRVLDLPYMFCDGVSKLIP 466 Query: 481 NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P SL A+ + +E + + L E+++KLEGL R HA G++I + Sbjct: 467 AAPGKQYSLDDAVEMEPILKERLENEEELRELWELAKKLEGLTRGIGMHAGGVLIAPGKI 526 Query: 540 SQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVKV 596 + P+Y+ D +PV+ + +E+ GL+KFDFLGL+ LT++ ++ ++ Sbjct: 527 TDFCPVYQAAGDDAVPVSMLDKDDVEQIGLVKFDFLGLRNLTIIDLAVKYIKALDPAFDT 586 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL+L+ F D Y +L T +FQLES GM++ LE ++PD EDIIA+++LYRPGP+ Sbjct: 587 DLNLLEFTDPAAYQILQKANTTAVFQLESDGMKRLLEKLKPDRFEDIIAVLALYRPGPLG 646 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V + RK GK+++ HP + L+ T GVI+YQEQVMQI+Q++ GY+L AD+LR Sbjct: 647 SGMVDDFILRKAGKQEVDYFHPDLTACLEPTYGVIVYQEQVMQISQIIGGYTLGGADMLR 706 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM + + + GA+ G +A +F+L+AKFA+YGFNKSH AAYAV+SY Sbjct: 707 RAMGKKKPEEMAEHRGKIAQGAAAKGYDPKLAEQLFDLMAKFAEYGFNKSHTAAYAVVSY 766 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDN 833 QTAW+K H+ F+AA+M+ E+DN +++K F D+ ++ +PP VN F V Sbjct: 767 QTAWLKAHHCAAFMAATMSSELDNTDQLKVFYDDSIANKLKFLPPDVNESFYRFVPVDRQ 826 Query: 834 RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y+L A+KG G HI+ + PF L DFC R D + +N+R +ESL+ AGA D Sbjct: 827 HIRYALGAVKGTGEAAVEHIVAVRQEGGPFTDLFDFCRRTDKRTVNKRTIESLIRAGAFD 886 Query: 893 CFGYSRMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 +R +L ++ ++ Q ++F + + + ++ + +V+ Sbjct: 887 AIEPNRAKLFANVGLAMEAAEQEAANANQGGLFDMFDADSAPTVEMVEVKPWP---PAVQ 943 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 E+ +G+Y SGHP Y+ +R G S T R +A V + K + Sbjct: 944 LAEEKLAIGYYLSGHPFSAYEKEVR--GFIKTPLSRITPRKEPQLIAGFVTGLRTKVGNR 1001 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G ++ ++ + + + E + F Sbjct: 1002 G-KMAFIQLDDGSAKREVSVF 1021 >gi|187935605|ref|YP_001887524.1| DNA polymerase III DnaE [Clostridium botulinum B str. Eklund 17B] gi|187723758|gb|ACD24979.1| DNA polymerase III subunit alpha [Clostridium botulinum B str. Eklund 17B] Length = 1203 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1004 (38%), Positives = 585/1004 (58%), Gaps = 59/1004 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+G+ + I+ K +IAITD L+ ++F + A GI+PI Sbjct: 20 FVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAALEYGIKPI 79 Query: 71 IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC++ + + +K ++ + + +VLLV GY+ L+++VS + + Sbjct: 80 LGCEVYVAGKSMKIKQPDKDNSTY----HLVLLVKNEIGYRNLMKIVSTASI-EGFYYKP 134 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ +L+ +EGLI L+ G + + + A++ + +K++F + Y+ +Q H Sbjct: 135 RVDHEYLKA-HSEGLIALSACLGGEVQSYELKGNYEKAKETAILYKEIFKEDFYLEIQNH 193 Query: 190 RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G D R+ + + EL PLVATN+ ++ ++ Y++HD+LM + V +R R Sbjct: 194 -GMDEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDVNRRR 252 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D YLK+ EM +FS +PEALENTV+I+++C++ + H LP+F + + E Sbjct: 253 YPSDQFYLKSPEEMWEMFSYIPEALENTVKISKQCNYEYKFHESKLPKFPLPQGE----E 308 Query: 307 EENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVIARM 351 N L+N GL R + +K A++ RL++EL +I +M Sbjct: 309 PYNYLKNTCYMGLIERYEEFKELRDKDLDYDELDDLKSKNDSAKNLIDRLEYELQIIRQM 368 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 + YFLIV DFI++A N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+ Sbjct: 369 GYIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFLNPE 428 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD D DFC +RR EVI YV KYG + V+QIITFG++ A+A +RDVGRA+ YS+ Sbjct: 429 RVSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYSYSE 488 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 VD++CK+IP + +A+ + +E D V L+++S+ LEGL RH+STHAAG Sbjct: 489 VDKICKMIPTMLGITIE-KALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSSTHAAG 547 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI PL Q VP+ ++ ++ VTQF M +E+ GL+K DFLGL+TLT++ ++L + + Sbjct: 548 VVIASTPLVQYVPLQKN--DEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKIIKE 605 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 R + +DL I F+D E Y ++ T G+FQLES GM ++ ++PD +EDIIA +SLY Sbjct: 606 NRNIDIDLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGISLY 665 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+ I Y K EK+ P ++ +L T GV++YQEQVM+I + L+GYS+ + Sbjct: 666 RPGPMAEIPRYIECKRNPEKVKYDAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSMGRS 725 Query: 711 DVLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADY 759 D++RRAM KK + M+++++ FI G +NGIS+ A IF+ + FA Y Sbjct: 726 DMVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDFASY 785 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAV+ YQTA++ +YPVE +AA + M + EK+ + A + IQ++PP Sbjct: 786 AFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQVLPP 845 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878 +N F V I + LAAIK VG +++ +K FDSL DF S++D +N Sbjct: 846 DINESFAKFAVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLSAIN 905 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +R +ESL+ +G D F R +LL Y + V+ +++ NI SD I Sbjct: 906 KRTIESLIKSGTFDSFKIYRSKLLAV------YEKMVDSISSDRKRNIDGQISLFASDDI 959 Query: 939 TLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILR 976 + + N + F+ E+ + G Y SGHPLD Y L+ Sbjct: 960 YVPEIEYPNIN-EFDKRSLLTMEKEMTGLYISGHPLDDYAQSLK 1002 >gi|254304372|ref|ZP_04971730.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324564|gb|EDK89814.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 1133 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1035 (37%), Positives = 611/1035 (59%), Gaps = 64/1035 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +H+ YSL EG S+++ L K ++A+TD N+F A+EF QKA GI+P Sbjct: 4 NFVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKKMGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L I +D + S+ LL GY+ L++L S +Y ++ ++ + Sbjct: 64 IIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKNNENRE-L 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFG-DRLYVNLQ 187 ++ L+E ++ LI L+ +G I +A NSS +++ + ++F + Y+ +Q Sbjct: 112 KLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENFYLEIQ 170 Query: 188 RHRGYDRYRESQVVQ-----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + E++++ LA H+L LVATNN ++ + YE D+++ + V + Sbjct: 171 A----NELSETKIINDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKE 226 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K+R R ++ + YLK++ EM + +A+EN IA C+ + P + Sbjct: 227 KNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANYIADLCNVEIGFGNLQFPYY----- 281 Query: 301 DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354 ++ E +G++ L I K Y +D RL++EL+VI +M +S Sbjct: 282 -EVPSE---------YSGMDEYLKTICHTNIKKLYKEDLTKDILDRLEYELSVIIKMGYS 331 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYF++V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+S Sbjct: 332 GYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERIS 391 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD DID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+ Sbjct: 392 MPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDK 451 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 L KL+ P + + + ++ + D + ++++++ ++E RH STHAAGI+I Sbjct: 452 LSKLVS--PFQALE-KTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILI 508 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593 L + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + Sbjct: 509 TKEDLDKTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKN 568 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 V +DL IP DD + +H+L+ + G+FQLES G+R+ ++ ++PD EDI+AL++LYRPG Sbjct: 569 VDIDLYKIPLDDKKVFHMLSLGDSTGVFQLESPGIRKIMKRLKPDKFEDIVALLALYRPG 628 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+ + +V + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD Sbjct: 629 PLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEAD 688 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK M + +E+FI A NG + + IFEL+ KFA YGFNKSH+ AYA+ Sbjct: 689 LLRRAMGKKNFAIMRENREKFIERAIHNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAM 748 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISY TA+ K +YP + AA MT E+ I + DA++ +++ P+VN+P F+V Sbjct: 749 ISYWTAYFKAYYPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNVNSPSAYFEVK 808 Query: 832 DNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + I YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GA Sbjct: 809 NEGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGA 868 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVEN 947 LD +R + S+D + Y+ K + N+F T DK L E F+++ Sbjct: 869 LDEIKGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGAAAKTI-DKFNLAISEDFTLDE 927 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQ 1006 + EQ LGFY S HPLD YK IL IK E + GN I+ + + ++ Sbjct: 928 ---KLNKEQEFLGFYLSSHPLDRYKDILTTFSIKKLSE--FDLEGNQVIKTFGTITNLKK 982 Query: 1007 KKTRKGSRIGWVTFS 1021 T+K ++ S Sbjct: 983 TITKKEEQMAMFNLS 997 >gi|229543549|ref|ZP_04432609.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] gi|229327969|gb|EEN93644.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] Length = 1114 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1037 (37%), Positives = 606/1037 (58%), Gaps = 60/1037 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV ++YSLLE +S+ A +AITD N ++ A F + GI+PI Sbjct: 3 FVHLQVQTAYSLLESTISIPEWAAYAKALHYDTLAITDRNVMYGAFPFYKACRENGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG DI + + T +P +VLL GY+ L+++ S + Q + Sbjct: 63 IGMTADI------MSSFEPDTAYP----VVLLAKNETGYRHLMKISSAI----QTRPEPG 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I + WL+ ++GLI T G G I++A AE+ + ++ +FG Y+ L+ + Sbjct: 109 IFIKWLRAY-SDGLIAFTPGLEGEIEQALLRGDEARAEEVAVLYRDIFGPSFYLALENN- 166 Query: 191 GYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G + ++ A + +L P VA N +L +ED AH+VL A+ ++ ++RPR Sbjct: 167 GTVQAKKVLPDMHALSEKLGIPEVAAANVKYLKKEDAFAHEVLRAIKAGVKLTDENRPRP 226 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + H K + EM +F+D PEAL NT +IA CS ++ +LP F Sbjct: 227 ESGTHDFKPQEEMEQLFADFPEALANTEKIADACSVEIKTGQRLLPAFPVPGG------- 279 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQW 366 A A LE +G A+ + ++ Y RL++EL +I M+FS YFLIV DF+++ Sbjct: 280 -----QTADAFLEEVCRKGLAARVPNLEERYTDRLEYELKIIQEMQFSDYFLIVWDFMKY 334 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+++ I GPGRGS AGS+ AYAL ITD+DP+++ LLFERFLNP+R+SMPD D DF + Sbjct: 335 AREHGILTGPGRGSAAGSLVAYALYITDVDPVQYGLLFERFLNPERISMPDIDSDFPDHK 394 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV KYG + VAQIITFG+ AKAA RDV R + ++++L + IP+ P Sbjct: 395 RDEMIRYVAEKYGRQHVAQIITFGTFAAKAAARDVARIFGLSAKELEQLSRFIPSQPGMT 454 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A S FRE +L E + LEGL RH STHAAG++I PL+ ++P+ Sbjct: 455 LK-KAYEASSAFREWIGQSDQHRKLFETALLLEGLPRHVSTHAAGVIISGEPLTGIIPV- 512 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 ++ + +TQ+ M +E+ GL+K DFLGL+ LT+L+ L + + G K+ L +P DD Sbjct: 513 QEGHDGIFLTQYPMNHLEEIGLLKMDFLGLRNLTILEHILTGIEKGTGRKIRLQDVPLDD 572 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ L ++ T GIFQ ES GMR+ LE ++P EDI+A+ +LYRPGP++NI Y RK Sbjct: 573 PQTFRLFSSGNTTGIFQFESDGMRKVLERLKPTEFEDIVAVNALYRPGPMENIPAYIERK 632 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G + + HP + P+L++T GVI+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E + Sbjct: 633 HGLKPVEYPHPDLQPILEKTYGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKKREIL 692 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+Q+ FI+GA K G + A I++ + +FA+YGFN+SHA AY++++ + A++K HYP+ Sbjct: 693 DEQRLHFINGAQKKGYERKTANTIYDFIVRFANYGFNRSHAVAYSMLACRLAYLKAHYPL 752 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F+A+ +T + N +KI ++ ++A+Q I+++PPSV F V + I YSLAAIKG+ Sbjct: 753 YFMASLLTSVIGNEDKIAQYIREAQQMGIRVLPPSVQHSHYPFTVENGAIRYSLAAIKGI 812 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G + + +++ +PF SL D RV K LNR++LE+ F+GA+D FG R LL S+ Sbjct: 813 GYASIKELLKERKRRPFKSLFDLVLRV--KGLNRKILEAFAFSGAMDEFGKDRAVLLASI 870 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN---------EQ 956 D ++A+ ++ + + ++F F D E FS+E + V E E+ Sbjct: 871 DVALEHAEIMKPD--DGQADLF------FED----EAFSIEPNYVETEPISLMDKLAFEK 918 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 + LG Y SGHP Y+P + G+ + +R IR A + + +T++GS + Sbjct: 919 QYLGLYLSGHPAGQYRPGWDEAGVLAVSKLQPGMR--KIRFGACITDTRTIRTKQGSLMA 976 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++ S+ E E FP Sbjct: 977 FLRMSDETDEIECVVFP 993 >gi|228910428|ref|ZP_04074243.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 200] gi|228849194|gb|EEM94033.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 200] Length = 1105 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1032 (36%), Positives = 609/1032 (59%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+I Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 224 DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR GL R G + + +RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 281 ---LRRVCEEGLRKRY-------GAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG + A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLQNGYDEMSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 808 GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ LGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|148381587|ref|YP_001256127.1| DNA polymerase III DnaE [Clostridium botulinum A str. ATCC 3502] gi|148291071|emb|CAL81534.1| DNA polymerase III, subunit alpha [Clostridium botulinum A str. ATCC 3502] Length = 1194 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1003 (37%), Positives = 586/1003 (58%), Gaps = 52/1003 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA +NNI+ +IAITD ++ ++F + A AG++ I Sbjct: 6 FTHLHLHTGYSLLDGAGKINNIIASAKELGMDSIAITDHGAMYGCVDFYKAAKNAGLKAI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ I + M+ + P + +VLLV GY+ LI++VS+ + D R Sbjct: 66 IGCEVYIVPK---SMSIKNSDPNNKIYHLVLLVKNEIGYKNLIKIVSKASI-DGFYYKPR 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 +L++ +EGLI L+ G I + + A++ L +K +F D Y+ LQ H Sbjct: 122 TDHQFLKD-HSEGLIALSACLGGEIQSNLLNENKEKAKEIALFYKSIFKDGFYLELQYH- 179 Query: 191 GYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G D R+ ++LA ++PLVATN+ ++ ++D + HD+L+ + V++++R R Sbjct: 180 GNDAERKVNDMNIRLARELKIPLVATNDVHYIEQKDSKFHDILLCIQTGKTVNKENRLRY 239 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FS +PEAL+NT +IA +C+F H LP+F+ E D Sbjct: 240 PSDQFYLKSADEMWEMFSHVPEALKNTEKIAEQCNFHYDFHTSKLPKFLLPEGTD----P 295 Query: 308 ENELRNKAVAGLEVR--LAQGAIAKGYH-------------AQDYRQRLDFELNVIARMK 352 ++ GL R L + + K ++ A+ Y RL +EL+VI M Sbjct: 296 FEYMKKFCFKGLIKRCDLFRDLLTKSFNINEIIALGKENEEAKIYIDRLQYELSVIDHMG 355 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + YFLIV+DFI++A + IP GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+R Sbjct: 356 YVDYFLIVSDFIKFANEKKIPTGPGRGSGAGSLVAYTLGITKIDPIKYGLIFERFLNPER 415 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D DFC +RR E+I YV KYG E V+QIITFG++ A+ +RDVGRA+ Y +V Sbjct: 416 ISMPDIDSDFCYERRGEIIDYVVEKYGKENVSQIITFGTMAARVCIRDVGRAMNYSYVEV 475 Query: 473 DRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 D++ K+IP P +++ +A+A + + + V L+++S LEGL RH+STHAAG Sbjct: 476 DKIAKMIPIVPGIIITIDKALALNPELKNEYENNLRVKELIDVSMNLEGLPRHSSTHAAG 535 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 I+I P+ VP+ ++ + V+QF+M +++ G +K DFLGLKTLT+L+ ++D + Q Sbjct: 536 IIISSSPIGDYVPLQKNEHN--IVSQFDMTTLDELGFLKMDFLGLKTLTVLKDAVDMIMQ 593 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 V +DL I +D E Y ++ T+GIFQLES+GM ++ ++PD +EDIIA +SLY Sbjct: 594 NHNVDIDLDKIDINDKEVYKMIGEGKTIGIFQLESTGMTSFMKELKPDSLEDIIAGISLY 653 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGPID I Y K +KI + P ++P+LK T G ++YQEQVM+I + L+GYS+ + Sbjct: 654 RPGPIDEIPKYIENKKNPDKITYLTPQLEPILKITYGCLVYQEQVMEIVRKLAGYSMGRS 713 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASK------------NGISKTIAVNIFELLAKFAD 758 D++RRAM KK + M+++++ FI G K N +S+ I +F+ + FA Sbjct: 714 DLVRRAMSKKKHKVMEEERKNFIYGIVKEDGEIEVPGCIRNEVSEKIGNELFDSMMDFAS 773 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 Y FNKSHA AYA+++YQTA++ +YP E++AA + M + K+ + A IQ++P Sbjct: 774 YAFNKSHAVAYALVAYQTAYLMKYYPAEYIAAKLNSVMGDNGKVAYYINYAESLGIQVLP 833 Query: 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKL 877 P +N F V DN I + L AIK VG A+ I+++ + F SL DF S++D + Sbjct: 834 PDINESFSKFIVEDNTIRFGLDAIKNVGIGAAKIIVKSRKKNGNFKSLIDFASKIDLTTI 893 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 N+R +ESL+ AGA DCF R +LL + + K + ++F + + Sbjct: 894 NKRAIESLIKAGAFDCFKVFRSRLLAVYEKVLDSISNQRKRNIDGQVSLFNADNTIVNIP 953 Query: 938 IT----LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 I +++F + E+ +LG Y +GHPLD Y L+ Sbjct: 954 IIKYPEIKEF---DKKYLLAMEKEMLGIYITGHPLDEYAQSLK 993 >gi|42783781|ref|NP_981028.1| DNA polymerase III DnaE [Bacillus cereus ATCC 10987] gi|42739711|gb|AAS43636.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987] Length = 1108 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQNMFGN-FYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPAFISKINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + +RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPTLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|154499865|ref|ZP_02037903.1| hypothetical protein BACCAP_03522 [Bacteroides capillosus ATCC 29799] gi|150271463|gb|EDM98720.1| hypothetical protein BACCAP_03522 [Bacteroides capillosus ATCC 29799] Length = 1161 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1055 (36%), Positives = 598/1055 (56%), Gaps = 56/1055 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ +SLL+GA + + ++ Q A+AITD ++ A++F + A G++P Sbjct: 2 SFVHLHVHTEFSLLDGACRIPALAARVRELGQSAVAITDHGVMYGAVDFYRACKAEGVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG---K 126 IIGC++ + + MT++ +VLL GY+ L LVSR +L G K Sbjct: 62 IIGCEVYVAPRG---MTDRVHELDAEARHLVLLCKNETGYRNLCYLVSRAFL--DGFYIK 116 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + L W TEGLI ++ +G + R + + A++ L K+ FG+ Y+ + Sbjct: 117 PRIDKELLWQH---TEGLIAMSACLAGEVPRLILGGNYEGAKRAALEMKEHFGEDYYLEI 173 Query: 187 QRHRGYDRYRESQVVQ-LAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 Q H +++VV+ + HE +PLVATN++ + ED D LM + V Sbjct: 174 QDH---SLPEDAEVVRGIIRIHEETGIPLVATNDAHYTRREDAAMQDTLMCIQMGRTVDD 230 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R + T + Y+K+ EM +F D PEA+ENTV +A +C+ + LP F + Sbjct: 231 PGRMKFETEEFYIKSEEEMAQLFPDWPEAIENTVRVAEKCNLEFEFGKYHLPEF---KLP 287 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + + + G R +G+ Q +++L++E+ VI +M F YFLIV+ Sbjct: 288 EGWTDPDAYFEHLCWEGFARRYPEGS-------QKNKEQLEYEMGVIRQMGFVDYFLIVS 340 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +AK +NIPVGPGRGS AGS+ +Y + ITD+DP+++ L FERFLNP+R++MPD DID Sbjct: 341 DFIGYAKSHNIPVGPGRGSAAGSMVSYCMNITDVDPVKYDLFFERFLNPERVTMPDIDID 400 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RR EVI YVQ KYG + VAQI+TFG++ A+ A+RDVGRAL +PY+ VD + K +P+ Sbjct: 401 FCIRRRQEVIEYVQQKYGEDHVAQIVTFGTMAARGAIRDVGRALNIPYADVDAVAKQVPS 460 Query: 482 DPA--HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P H +++ + R++ D + L++ ++ +EG+ RHASTHAAG+VI RP+ Sbjct: 461 GPGALHITLDESLKLSKQLRDSYEGDERIHNLIDTAKAIEGMPRHASTHAAGVVITKRPV 520 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + VP+ ++ S VTQ+ M +E+ GL+K DFLGL+ LT+L ++ + +R D+ Sbjct: 521 YEYVPLAKNDES--VVTQYVMTTLEELGLLKMDFLGLRNLTVLDDAVQLVRRRIPDFDIH 578 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP D + +L+ T G+FQ+ES+GM G++P IEDI A+++LYRPGP+++I Sbjct: 579 SIPDHDPAVFKMLSDGKTSGVFQMESAGMTGVCVGLKPQNIEDITAIIALYRPGPMESIP 638 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K +K+ HP+++P+LK T G I+YQEQV++I Q L GYSL +AD++RRA+ K Sbjct: 639 RFIACKQNPDKVKYKHPMLEPILKVTYGCIVYQEQVIRIFQELGGYSLGQADMVRRAISK 698 Query: 720 KIKEEMDKQKERFISGASKNGISKTIA--------VNIFELLAKFADYGFNKSHAAAYAV 771 K K +++K+++ FI G S+ GI IA +I++ + FA+Y FNK+HA +YA+ Sbjct: 699 KKKAQIEKERQTFIYGDSERGIEGCIARGVPEQTGKDIYDEIYDFANYAFNKAHAVSYAI 758 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++YQTA+ K HY E++AA +T +D+ EK+ ++ + ++ I ++PP +N F V Sbjct: 759 VAYQTAYFKCHYTREYMAALLTSVLDSSEKVAEYIAECKECGISLLPPDINESGASFTVT 818 Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I + LAA+KGVG + ++ E F SL DFCSR+ LN+RVLE+L+ GA Sbjct: 819 GENIRFGLAAVKGVGWGFIQSVLDERERGGAFQSLSDFCSRMMDADLNKRVLENLIKCGA 878 Query: 891 LDCFGYSRMQLLQSLDN-IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 D G R QLL+ + AQ KN + ++F +E + S Sbjct: 879 FDSTGARRSQLLKVFPQVVDSIAQTRRKNLEGQF-DLFGGGGDQPQAAPEMELPDIPEFS 937 Query: 950 VR--FENEQRVLGFYFSGHPLDVYKPILRK---MGIKGYEESVATIRGNN-------IRL 997 R E+ G Y +GHP+D Y+ R+ I A GN + + Sbjct: 938 RRELMTMEKETTGLYLTGHPMDEYRETARRYHAAPIGAILSDFAKEEGNTDFQDGQKVNI 997 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A ++ S + K TR S + +VT + E F Sbjct: 998 AGVISSAKTKTTRNNSLMAYVTLEDDTGSMELLVF 1032 >gi|118479750|ref|YP_896901.1| DNA polymerase III DnaE [Bacillus thuringiensis str. Al Hakam] gi|118418975|gb|ABK87394.1| DNA polymerase III catalytic subunit, DnaE type [Bacillus thuringiensis str. Al Hakam] Length = 1108 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1033 (36%), Positives = 605/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + Q + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEQEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDEESQAEAVARAYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPAFMSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKE 306 D +YLK+ EM ++FS PEA++NT+ IA RC + H LP+F E DI Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIRIAERCQVEIPFHVNQLPKFPVPSNETSDIY-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL+ R G + + RL+ EL+VI+ M FS YFLIV DF+++ Sbjct: 284 ----LRRVCEEGLQKRY-------GTPKEVHINRLNHELSVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIRFIVQKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ VLG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|257465914|ref|ZP_05630225.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315917070|ref|ZP_07913310.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|313690945|gb|EFS27780.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 1144 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1038 (37%), Positives = 613/1038 (59%), Gaps = 43/1038 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+G + + + + + + AIAITD N+F ALEF QKA G++PI Sbjct: 4 FVHLHLHTEYSLLDGVGKIEDYMKRAKSLRMKAIAITDHGNMFGALEFYQKAQKYGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++I + + +G+ ++LL EGYQ L++L S YL + R Sbjct: 64 IG--VEIYLSEYPLAEKKGRNF-----HLILLAENYEGYQNLMKLSSLAYL-EGFYYKPR 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFG-DRLYVNLQR 188 + L++ ++G+I L+ +G I + + E +L ++ +FG + Y+ +Q Sbjct: 116 LDKELLKKY-SKGIIALSACMNGEIASYILEGAEESKIEATILEYQDIFGKENFYLEVQA 174 Query: 189 HRGYDRYRESQVVQLAYTH----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + + QV + Y ++PLVATN++ ++++ ++ DV++ + + +S + Sbjct: 175 H---EEIEQQQVNEALYAFGKKMKIPLVATNDTHYVNKGEHILQDVIICIQTGSHLSDEK 231 Query: 245 RPRV-TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R+ D YLK+ EM ++ + EAL+N+VEIA+RC + +H P + E Sbjct: 232 RMRIEMQDLYLKSYEEMYAVLGEQYQEALQNSVEIAKRCQLWIPMHEFQFPDYNLPEG-- 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIV 360 I EE L+ GL R QG D R +R+++EL++I +M ++GYF++V Sbjct: 290 ISSLEEY-LKKLTYEGLGKRYPQGL--------DERIVERVEYELSIINKMGYAGYFVVV 340 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +A+ IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DI Sbjct: 341 WDFISFARSRKIPIGPGRGSAAGSLVAYALEITQLDPLEYRLIFERFLNPERISMPDIDI 400 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D CQ+RR E+I YV KYG ++VAQI TFG+L+A+AA+RDVGR + + S++D+ K IP Sbjct: 401 DICQERRQEIIDYVVQKYGQDKVAQIATFGTLKARAAIRDVGRVMDVELSKIDKAAKCIP 460 Query: 481 NDPAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 SL+ + +++ + D + ++ + ++E RH STHAAG++I + L Sbjct: 461 ----MFASLREVLEENIELKTMYQQDVELKNVINTAMRIENKVRHISTHAAGVLITKKSL 516 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 ++ VP+Y D ++ + TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ + G K++L Sbjct: 517 TESVPLYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTGKKIEL 576 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S IP D Y +L+ + G+FQ+ES G+R L+ +QP+ DI+AL+SLYRPGP+ + Sbjct: 577 SEIPLQDKTVYEMLSKGDSFGVFQMESRGLRSILKRLQPNSFGDIVALLSLYRPGPLGSG 636 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +V + +RK+GK+ I HP ++ +LKET GVI+YQEQVM+IA +++ YSL EAD+LRRA Sbjct: 637 MVDDFIDRKHGKKAIEYPHPSLEEVLKETYGVILYQEQVMKIANIMADYSLGEADLLRRA 696 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK E M + + +FI + K G S+ A IF+L+ KFA YGFNKSH+AAYA+I+Y T Sbjct: 697 MGKKNVEIMHENRSKFIERSIKKGYSREKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWT 756 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A+ K HYP F AA ++ E+ +++KI + DA+ ++I P V P F V ++I Sbjct: 757 AYCKVHYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIETPDVQFPSSRFVVKGDKIL 816 Query: 837 YSLAAIKGVGT-TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 ++L+AIK VGT + + E F S EDF R+ + LN++ LE+ ++AGALD Sbjct: 817 FALSAIKNVGTGISEKIKEEREKKGEFRSYEDFVERMKKEGLNKKGLEAFIYAGALDSLS 876 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + ++SLD + Y Q K + N+F K + +L + V E E Sbjct: 877 GNRHEKIESLDKVLDYVQRKAKADDIQQMNLFGDSKKNLV-QFSLSRIEEYPMEVLLEKE 935 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGFY S +PLD Y+ + + + + L ++ + ++ +T+KG + Sbjct: 936 KEFLGFYVSANPLDRYESLYQSFDFDEFNIIKEENMEREVWLYGIIQNLKKTRTKKGDAM 995 Query: 1016 GWVTFSEPAKEYEANFFP 1033 + + FP Sbjct: 996 AFADLENYQGQIPMVIFP 1013 >gi|229175312|ref|ZP_04302827.1| DNA polymerase III subunit alpha [Bacillus cereus MM3] gi|228608144|gb|EEK65451.1| DNA polymerase III subunit alpha [Bacillus cereus MM3] Length = 1108 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1033 (36%), Positives = 608/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAENEMGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +F D Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQSMF-DNFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPAFMSRINVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHINQLPKF------PVPANET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + +RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDMYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ ++ G ++DL +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGTQIDLRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREKKVFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVLFP 984 >gi|257452286|ref|ZP_05617585.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|317058829|ref|ZP_07923314.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|313684505|gb|EFS21340.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] Length = 1144 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1045 (37%), Positives = 622/1045 (59%), Gaps = 57/1045 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+G + + + + + + AIAITD N+F ALEF QKA G++PI Sbjct: 4 FVHLHLHTEYSLLDGVGKIEDYMKRAKSLRMKAIAITDHGNMFGALEFYQKAQKYGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++I + + +G+ ++LL EGYQ L++L S YL + R Sbjct: 64 IG--MEIYLSEYPLAEKKGRNF-----HLILLAENYEGYQNLMKLSSLAYL-EGFYYKPR 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFG-DRLYVNLQR 188 + L++ ++G+I L+ +G I + + E +L ++ +FG + Y+ +Q Sbjct: 116 LDKELLKKY-SKGIIALSACMNGEIASYILEGAEESKIEATILEYQDIFGKENFYLEVQA 174 Query: 189 HRGYDRYRESQVVQLAYTH----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + + +V + YT +PLVATN++ ++++ ++ DV++ + + +S + Sbjct: 175 H---EEIEQQKVNEALYTFGRKMNIPLVATNDTHYVNKGEHVLQDVIVCIQTGSHLSDEK 231 Query: 245 RPRV-TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R ++ D YLK+ EM ++ + EAL+N+VEIA+RC + +H P + E Sbjct: 232 RMKIEMQDLYLKSYEEMYAVLGEQYQEALQNSVEIAKRCQLWIPMHEFQFPDYNLPEG-- 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIV 360 I EE L+ GL R QG D R +R+++EL++I +M ++GYF++V Sbjct: 290 ISSLEEY-LKKLTYEGLGKRYPQGL--------DERIIERVEYELSIINKMGYAGYFVVV 340 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +A+ IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DI Sbjct: 341 WDFISFARSRKIPIGPGRGSAAGSLVAYALEITQLDPLEYHLIFERFLNPERISMPDIDI 400 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D CQ+RR E+I YV KYG ++VAQI TFG+L+A+AA+RDVGR + + +++D+ K IP Sbjct: 401 DICQERRQEIIDYVVQKYGQDKVAQIATFGTLKARAAIRDVGRVMDVELAKIDKAAKCIP 460 Query: 481 NDPAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 SL+ + +++ + D + ++ + ++E RH STHAAG++I + L Sbjct: 461 ----MFASLKEVLEENIELKTMYQQDVELKNVINTAMRIENKVRHISTHAAGVLITKKSL 516 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 ++ VP+Y D ++ + TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ + G K++L Sbjct: 517 TESVPLYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTGKKIEL 576 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S IP D Y +L+ + G+FQ+ES G+R L+ +QP+ DI+AL+SLYRPGP+ + Sbjct: 577 SEIPLQDKTVYEMLSKGDSFGVFQMESKGLRSILKRLQPNSFGDIVALLSLYRPGPLGSG 636 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +V + +RK+GK+ I HP ++ +LKET GVI+YQEQVM+IA +++ YSL EAD+LRRA Sbjct: 637 MVDDFIDRKHGKKAIEYPHPSLEEVLKETYGVILYQEQVMKIANIMADYSLGEADLLRRA 696 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK E M + + +FI + K G S+ A IF+L+ KFA YGFNKSH+AAYA+I+Y T Sbjct: 697 MGKKNVEIMHENRSKFIERSIKKGYSQEKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWT 756 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A+ K HYP F AA ++ E+ +++KI + DA+ ++I P V P F V ++I Sbjct: 757 AYCKVHYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIETPDVQFPSSRFVVKGDKIL 816 Query: 837 YSLAAIKGVGT-TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 ++L+AIK VGT + + E F S EDF R+ + LN++ LE+ ++AGALD Sbjct: 817 FALSAIKNVGTGISEKIKEEREKKGEFRSYEDFVERMKKEGLNKKGLEAFIYAGALDSLS 876 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT---FSDKITLEKFSVENSSVRF 952 +R + ++SLD + Y Q K + N+F K FS T E++S+E V Sbjct: 877 GNRHEKIESLDKVLDYVQRKAKADDIQQMNLFGDSKKNLVQFSLSRT-EEYSME---VLL 932 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR----LAAMVVSKQQKK 1008 E E+ LGFY S +PLD Y+ + + + + I+ N+ L ++ + ++ + Sbjct: 933 EKEKEFLGFYVSANPLDQYESLYQSFDF----DELNLIKEENMEREVWLYGIIQNLKKTR 988 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 T+KG + + + FP Sbjct: 989 TKKGDAMAFADLENYQGQIPMVIFP 1013 >gi|222823894|ref|YP_002575468.1| DNA polymerase III, alpha chain [Campylobacter lari RM2100] gi|222539116|gb|ACM64217.1| DNA polymerase III, alpha chain [Campylobacter lari RM2100] Length = 1197 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1004 (38%), Positives = 590/1004 (58%), Gaps = 60/1004 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + A ++A+TD N+F A++F + A GI+PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELAKTLKAQGATSVAMTDHGNMFGAIDFYKTMRAEGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D++ + F + L GY+ L+ L S+ Y+ G Sbjct: 64 IGLEAYLHNHDDIS-DKSSRQRF----HLCLFAKNEIGYKNLMYLSSQSYI--HGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E ++GLI + G I +R F + + A++ L +KK+FGD Sbjct: 117 RINKKLLEAHSDGLICSSACLQGEINWHLNTKNERNIKFGAKGYEGAKEAALWYKKVFGD 176 Query: 181 RLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Y+ + RH G D ++ + +++LA ++ ++ATN++ + +E AH+V M +A Sbjct: 177 DFYLEIMRH-GIDDQKFIDDSIIKLAKELDIKIIATNDTHYTFKERAAAHEVFMCIAMGV 235 Query: 239 VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI- 296 + R R + Y+K +M +F+D+PEA+ENT EIA +C+ L++ P P F Sbjct: 236 KLDDPGRLRHEVHEFYVKTPEQMSELFADIPEAIENTQEIANKCNLELKLGDPTPPNFKF 295 Query: 297 ------EKECDDIQKEEENELRNKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDF 343 + + Q+++E N + GLE RL I + H Q+Y+ RLD Sbjct: 296 TREYAKKYSLNLAQEDQEFSFDNDDIVFEYLCKKGLEERLQ--FIDESKH-QEYKDRLDL 352 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E+++I MKFSGY LIV DFI AK+ +IPVGPGRGS AGS+ +Y L ITD+DP+ ++LL Sbjct: 353 EISIIKNMKFSGYMLIVHDFIAAAKEKDIPVGPGRGSAAGSLVSYCLKITDLDPIPYNLL 412 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG E+VAQ+ITFG L AK +RDV R Sbjct: 413 FERFLNPERVSMPDIDVDFCQDRRGEVIDYVIDKYGAEKVAQVITFGKLLAKGVIRDVAR 472 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + + +A + + E + P ++ + ++ LEGL R Sbjct: 473 VCDMSIPDADALAKLVPEELKITLE-KAYEQEPKIAEFVNSHPKGRQVWDFAKALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L P++R ++D VTQ++ +++E LIKFDFLGLKTLT+ Sbjct: 532 NAGLHAAGVVISNEALWNKAPLFRQSKNDERHLVTQYSKEYLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R G V I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 IDNAIKLVKKRYGKDVIWEKIDMNDPKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 ED+IA+++LYRPGP+D+ +V + + K+G++ + P+L+ T GVI+YQEQVMQI Sbjct: 652 EDLIAVLALYRPGPLDSGMVDDFIDIKHGRKAATYAFDDLKPILENTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q + G+SL AD +RRAMGKK +E +D K ++ GA K G + A ++FEL+ KFA+ Sbjct: 712 VQKIGGFSLGGADNVRRAMGKKKREILDNLKAEYLEGAKKQGYDEKKADDLFELILKFAE 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E NV+K+ K+ ++ ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEESNVDKVAKYIEEMKRMNIKLLP 831 Query: 819 PSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873 PSVN +F G I Y L AIK VG +IM ++ F +DF S +D Sbjct: 832 PSVNKAQREFSATKLEDGSEAIIYGLGAIKSVGIPAIENIMTIRKEEGFSDFDDFISSID 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 K+N++ +E+L +GA D FGY+R L+ +L+ I + ++ + + + N ++F E+ Sbjct: 892 PTKINKKTIENLAKSGAFDEFGYTRKCLVDNLELISETSRKIAEVKRNSTASLFGEEEIA 951 Query: 934 FSDKITLEKFSVENSSVRFE------NEQRVLGFYFSGHPLDVY 971 K+ L +S V FE E+ +LG Y SGHPLD + Sbjct: 952 ADIKVGL-----HDSKVEFELMEKLGYEKEILGIYVSGHPLDKF 990 >gi|291276386|ref|YP_003516158.1| DNA polymerase III subunit alpha [Helicobacter mustelae 12198] gi|290963580|emb|CBG39412.1| DNA polymerase III, alpha chain [Helicobacter mustelae 12198] Length = 1184 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1067 (37%), Positives = 628/1067 (58%), Gaps = 61/1067 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+ HL +H+ YS+L+GA + N++ ++ ++++TD N+F A+EF + A GI+P Sbjct: 2 SYTHLHLHTEYSMLDGANKIKNLIQRLKELGMSSVSMTDHGNMFGAIEFYKSMKAEGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + + L + +GK F + L GY+ L+ +S M ++ Sbjct: 62 IIGMEAYVHNYEELN-SKEGKQRF----HLCLYAKNEVGYKNLM-FLSSMAFIEGFYYYP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-----------LLTFKKLF 178 RI L+E +EGL+ + G ++ F N+S+ +KR L ++ +F Sbjct: 116 RISKKLLRE-HSEGLVASSACLGGEVN--FHLNTSERNKKRGAKGIEMAKEVALEYRDIF 172 Query: 179 GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 G+ Y+ + RH + + +++++ + L+ATN++ ++S++D++ +V+ + Sbjct: 173 GEDFYLEIMRHGINHQENIDDLIIRISQETGIKLIATNDAHYISQKDHKMQEVVQTLGQG 232 Query: 238 TVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPI 291 ++ +R + T + Y+K+ EM IF+D+PEAL NT EI +C+ +++ + P Sbjct: 233 KTLNDPNRLKHTVFEFYVKSSEEMERIFADIPEALRNTQEIVEKCNLEIELKDEKTNPPT 292 Query: 292 LPRFI-EKECDDIQKEE-ENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 P FI KE ++ +E +N+ K+ GLE L I + H Q YR RL+ E+ Sbjct: 293 PPTFIFTKEYAKLEGQEIDNDADFFAYKSRQGLEEYLK--IIPQEKH-QIYRDRLEEEIR 349 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 +I +MKF GY LIV DFI +AK NIPVGPGRGS AGS+ A+ L ITDIDP++++LLFER Sbjct: 350 IITQMKFPGYMLIVWDFIHFAKSQNIPVGPGRGSAAGSLVAFCLKITDIDPMKYNLLFER 409 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD D DFCQ RR EVI Y+ KYG VAQ+ITFG L AK A+RDV R L Sbjct: 410 FLNPERVSMPDIDTDFCQRRRGEVIEYMIQKYGKYNVAQVITFGKLLAKNAIRDVARVLD 469 Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 MP D KLIPN + A A + + E +P + E + +LEGL R+A Sbjct: 470 MPLKDADAFAKLIPNQLGIKLE-DAHALEPKIEEFMNQNPKARDVWEYALQLEGLNRNAG 528 Query: 527 THAAGIVI-GDRPLSQLVPMYRDVRSDLP-VTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HAA IV+ ++ L P+ +SD VTQ++MK++E LIKFDFLGLKTLT++ Sbjct: 529 KHAAAIVLDSEKELWHKTPLCTVGKSDDSLVTQYSMKYLEPVDLIKFDFLGLKTLTVVHD 588 Query: 585 SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +L+ + +R G ++D + DD + Y + + TLGIFQ+ESS + + ++P EDI Sbjct: 589 ALELIKKRYGKEIDFLSVDVDDKKVYETIQSGDTLGIFQIESSMFQGLNKRIKPSNFEDI 648 Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 IA+++L RPGP+++ +V + NRK+G E+I + ++P+LK T G I+YQEQVMQI Q Sbjct: 649 IAIIALGRPGPMESGMVDDFINRKHGLEEITYMFDALEPILKPTYGTIVYQEQVMQIVQT 708 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 + G+SL AD++RRAMGKKIKEEM++ K F +GA KNG + A +++EL+ KFA YGF Sbjct: 709 IGGFSLGGADLVRRAMGKKIKEEMERLKSDFATGAEKNGFDRAKAEDLWELIVKFAGYGF 768 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSH+AAYA+I++QTA++KT+Y EF+AA ++ E +E + K+ + ++ ++ M P V Sbjct: 769 NKSHSAAYAMITFQTAYLKTYYKEEFMAALLSSESGKIESVAKYINEVKKMDMDFMSPHV 828 Query: 822 NTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIM---EASADKPFDSLEDFCS 870 N +F V G +I + L+AIKGVG ++I+ E D F SLEDF S Sbjct: 829 NISEKNFGVANFEHEGMGIKKIIFGLSAIKGVGDEPIQNIISVREKGGD--FKSLEDFIS 886 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 RVD K+ +RVLE L+ +G LD GYSR +L++LD I + + +K + + + +F Sbjct: 887 RVDFSKITKRVLEPLIKSGGLDGLGYSRACMLKNLDAICEAGRRKDKAKESMAQGLFGGL 946 Query: 931 KGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 + + + + E +R + E LG Y SGHPL+ Y+ + G++G+ SV+ Sbjct: 947 EDEVEQNVRFDFSNFEEFPLRDLLDLEFECLGIYVSGHPLEEYRESIE--GLQGFVPSVS 1004 Query: 989 --TIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFF 1032 + ++ L A VS+ +K K ++ G+V + + E FF Sbjct: 1005 LGEVEEDSYCLIAGKVSEITRKMSKSNKPYGYVNLLDLYGKIEIMFF 1051 >gi|296184692|ref|ZP_06853103.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] gi|296050474|gb|EFG89897.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] Length = 1183 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1005 (37%), Positives = 596/1005 (59%), Gaps = 50/1005 (4%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK+ +V L H+ YSLL+ + + ++ K +IAITD ++ ++F ++A Sbjct: 3 EKTYDWVSLHQHTGYSLLDSSAKIPELISKAKELGMKSIAITDHGVMYGCVDFYKEAKEQ 62 Query: 66 GIQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + + ++K ++ + +VLLV GY+ L+++VS+ + + Sbjct: 63 GIKPIIGCEVYVAGKSMHIKQNDKENENY----HLVLLVKNETGYKNLMKIVSKASV-EG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 R +L++ +EGLI L+ G I + A++ L +K +F D Y+ Sbjct: 118 FYYKPRTDHDYLKK-HSEGLISLSACLGGEIQSYILKGNLSKAKEIALLYKDIFKDGFYL 176 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H ++ + ++++++ ++PLVATN+ ++ +EDY+AHDVL+ + VV+++ Sbjct: 177 ELQYHGMEEQEKVNEELIKMSKELDIPLVATNDVHYIKKEDYKAHDVLLCIQTGKVVNEE 236 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R R D YLK+ EM IFS +PEALENTV+IA +C+F + H LP+F E Sbjct: 237 NRMRYPSDEFYLKSPEEMYKIFSRVPEALENTVKIAEQCNFDYEFHKSKLPKFPLPE--- 293 Query: 303 IQKEEENELRNKAVAGL-----------EVRLAQGAIAK----GYHAQDYRQRLDFELNV 347 E LR+ GL EV + ++ + A+ +RL++EL++ Sbjct: 294 -HVEPYEYLRDLCYKGLIQRYKEFEQLKEVSFSIESVNELADSNDEAKKLVERLEYELSI 352 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M + YFLIV DFI ++ +N I GPGRGS AGS+ AY L IT IDP+++SLLFERF Sbjct: 353 IKQMGYVDYFLIVWDFINFSVENGIMTGPGRGSAAGSIIAYTLGITKIDPIKYSLLFERF 412 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+A +RDVGRA+ Sbjct: 413 LNPERVSMPDIDSDFCYERRGEVIDYVVRKYGENSVSQIITFGTMAARACIRDVGRAMNY 472 Query: 468 PYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 PY++VDR+ K+IP P +++ +A+ +S EA + L++I++ LEGL RH S Sbjct: 473 PYAEVDRIAKMIPAAPGKAITIDKALELNSELEEAYENEERTKALIDIARALEGLPRHTS 532 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 THAAG+VI +PL VPM ++ D VTQF M +E+ GL+K DFLGL+TLT+L+ ++ Sbjct: 533 THAAGVVIASQPLVNYVPMQKN--EDNIVTQFTMGTLEELGLLKMDFLGLRTLTVLRDAV 590 Query: 587 DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + +G+ +DL I +DD Y ++ T+GIFQLES+GM ++ ++PD +EDIIA Sbjct: 591 SMVKDNKGINIDLDKIDYDDKNVYKMIGEGKTVGIFQLESAGMTSFMKELRPDSLEDIIA 650 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +SLYRPGP+ I Y + KN E I + P ++ +L T G ++YQEQVM+I + L+GY Sbjct: 651 GISLYRPGPMAEIPKYISNKNNPEGIEYLTPELESILGVTYGCMVYQEQVMEIVRKLAGY 710 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFI------------SGASKNGISKTIAVNIFELL 753 S+ +D++RRAM KK M++++ FI G KNGIS+ A IF+ + Sbjct: 711 SMGRSDLVRRAMSKKKHHVMEEERHNFIYGIVDEEGVEKVPGCIKNGISEDAADKIFDSM 770 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSHAA+YAV+++QTA+M +YP E++AA + + EK+ + + A + Sbjct: 771 MDFASYAFNKSHAASYAVVAFQTAYMIHYYPTEYIAAMLNSVKGDNEKVAYYTRFADEIG 830 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRV 872 IQ++ P++N F V +++I + L+AIK VG I+++ K F +L DFC+++ Sbjct: 831 IQVLTPNINESYAKFTVKEDKIRFGLSAIKNVGENVIDSIVKSRERKGVFSNLVDFCNKI 890 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D +N+RV+ESL+ AGA DCF R +LL + + K + ++F K Sbjct: 891 DVSCINKRVVESLIKAGAFDCFKVYRSKLLAVYEKVLDGVSNSRKKNIDGQLSLFTDFKK 950 Query: 933 TFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPIL 975 ++ +E ++ R E+ + G Y SGHPL+ Y+ L Sbjct: 951 I---EVKIEYPEIKEFEKRHILAMEKEMTGLYLSGHPLEEYEKSL 992 >gi|227824700|ref|ZP_03989532.1| DNA polymerase III [Acidaminococcus sp. D21] gi|226905199|gb|EEH91117.1| DNA polymerase III [Acidaminococcus sp. D21] Length = 1156 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1024 (37%), Positives = 607/1024 (59%), Gaps = 42/1024 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+GA + +++ PA+AITD ++ A+EF Q+ GI+PI Sbjct: 22 FVHLHTHTQFSLLDGACRIPDLVSYAKELGMPALAITDHGVMYGAIEFYQECVKQGIKPI 81 Query: 71 IGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC++ I + M +GK + ++LL GYQ L++LVS + ++ Sbjct: 82 IGCEVYITSGSHTVKNMEARGK-----LYHLILLAENRTGYQNLMKLVS-IGQVEGFYYK 135 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L++ EGLI L+ +G + R + AEK +L + +FG D Y+ +Q Sbjct: 136 PRIDKQDLRKY-HEGLICLSACVAGEVARHIVRGEKETAEKVMLEYLDIFGRDHYYLEIQ 194 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ ++ LA + + LVATN+ ++ ++D + D+L+ + + R Sbjct: 195 NHGLPEEKAVADELHHLARKYNVKLVATNDLHYVHQDDAKGQDILLCIQTNARYLDPQRM 254 Query: 247 RVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D +YLK+RSEM ++F D EAL+NT+EIA RC L+ +LP F E + Sbjct: 255 RFNNDSYYLKSRSEMEALFPDDAEALDNTLEIADRCDLTLEFGHLLLPEFPLPEG---ET 311 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + L+ V G + R + + ++R+D+EL +I +M +SGYFLIV DFI Sbjct: 312 SMDAYLKKLCVKGFQERYPKDDGSA-------QKRMDYELGIIRQMGYSGYFLIVWDFIN 364 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 + + ++IPVGPGRGS AGS+ AY ITDIDPL+++L+FERFLNP+R+SMPD D D C Sbjct: 365 YCRTHDIPVGPGRGSAAGSIVAYLTGITDIDPLKYNLIFERFLNPERVSMPDIDTDICYV 424 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 +R V+ Y+ +KYG VAQI+TFG+L AKAA++DVGR++++P + V ++ KLIPN P Sbjct: 425 KRHLVVDYLASKYGESHVAQIVTFGTLAAKAAIKDVGRSMEVPLNVVGQVNKLIPNTPG- 483 Query: 486 PVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +L++ + SR ++ DPS+ +L++ + ++EG+ RH STHAAG+VI L+ VP Sbjct: 484 -TTLKSALEGSRDLQQLVQNDPSIAQLMDFAGRVEGMPRHTSTHAAGVVITPGELTNYVP 542 Query: 545 MYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 + SD TQ++ E GL+K D LGL+TLT++ ++ + + +G+K+D+ Sbjct: 543 LQITSTSDDDHEYICTQYDKDCSEALGLLKMDLLGLRTLTVIDDTVKMIEKNQGIKLDIH 602 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I +D +T +L T +FQ+ES GM + ++ + P+ + D+I LV+LYRPGP+ + + Sbjct: 603 HIDLEDPKTCQMLCAGDTAAVFQMESDGMTRLMKELGPESMADLIPLVALYRPGPLGSGM 662 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 + ++GK +HPL++P++ +T GVI+YQEQVMQI +L G+SL EAD+LRRAM Sbjct: 663 AEDFIAGRHGKRTARVLHPLMEPIVADTYGVILYQEQVMQIVSVLGGFSLGEADILRRAM 722 Query: 718 GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 GKK + +D KE+F++GA++ + IS+ + IF LL FA YGFNKSH+AAYA+++YQT Sbjct: 723 GKKKAKLLDSMKEKFLAGAAREHQISRQLGEEIFALLQHFAGYGFNKSHSAAYALVAYQT 782 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K +YPVE++AA + + EK+ + R I+++PP +N+ F V + + Sbjct: 783 AYLKANYPVEYMAAFLNSVITVAEKVSWYISVCRDMGIKVLPPDINSSEAAFSVDGDNVR 842 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L AIK VG T I+ E F DF SRVD K+N+RV+E+L+ +G++D FG Sbjct: 843 FGLGAIKSVGETAVAVILKERERHGLFKDFFDFASRVDLTKVNKRVVENLIKSGSMDTFG 902 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS--VENSSVRFE 953 Y R QLL +D A + +R ++F + + I + ++ +R E Sbjct: 903 YRRRQLLAIMDRALDAAAQDQHDRMTGQLSLFGGDTRQSAAAIPIPDLPEIPKDEVLRLE 962 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKM-GI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 E ++GFY +GHPLD ++ +L M GI + EE G + + ++ + + T+K Sbjct: 963 KE--LIGFYVTGHPLDAFRKVLSSMTGIARCTEEHYHD--GERVTVGGLITGVRIRSTKK 1018 Query: 1012 GSRI 1015 G R+ Sbjct: 1019 GERM 1022 >gi|228917242|ref|ZP_04080799.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842443|gb|EEM87534.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1105 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/1032 (36%), Positives = 608/1032 (58%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PII Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPII 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E N Sbjct: 224 DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNETN 277 Query: 310 E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 278 DMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 808 GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSL 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ VLGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|320529018|ref|ZP_08030110.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399] gi|320138648|gb|EFW30538.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399] Length = 1130 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1039 (37%), Positives = 605/1039 (58%), Gaps = 40/1039 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA + ++ + ++AITD ++ A+ F ++A A GI P Sbjct: 2 SFVHLHVHTEYSLLDGASRIKELVQRTKELGMDSVAITDHGVMYGAIAFYKEAMAQGIHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + Q + + ++LL GY+ L+ LVS + ++ Sbjct: 62 IIGCEVYVAPQSRHERAEVDGVRYY---HLILLAENEIGYRNLVRLVS-LANIEGYYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ EG+I L+ +G I R+ + ++ L + +FG D ++ LQ Sbjct: 118 RVDKDLLRQY-HEGIIALSACVAGEIPRSILRGDPERTDEILAEYVDIFGRDNFFLELQD 176 Query: 189 HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + ++ L+ H++ LVATN+ ++ ED E HD+L+ V ++ +R R Sbjct: 177 HGLPEEKTVNHALRDLSKKHDIGLVATNDIHYVRAEDSEFHDILLCVQTGRTINDPNRMR 236 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDI 303 + PD+YLK+ +EM ++F D P A+ENT +IA RC ++ P P EK DD Sbjct: 237 FSGPDYYLKSEAEMTALFHDYPGAVENTAKIAARCRVDFTFGELQLPFYP-IPEKFADD- 294 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR L R ++ + R RLD+EL VI M ++ YFLIV DF Sbjct: 295 ----DAYLRTLCEERLPERYSE-------ITNEIRSRLDYELGVIHGMGYASYFLIVWDF 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +A+ + + VGPGRGS AGS+ AY L IT+IDPLR++LLFERFLNP+R+SMPD DIDF Sbjct: 344 INYARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFD 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 R VI YV+ +YG + VAQI TFG++ AK A+RDVGR L+M +S+V + KL+P++ Sbjct: 404 DINRGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVGRVLEMSFSEVSNITKLVPSEL 463 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ + + FR D SV R++++++K+EGL R+ S HAAG+VI PL+ V Sbjct: 464 NITID-RALKESADFRRLYDEDESVRRVIDLARKIEGLPRNTSIHAAGVVIAKEPLTNHV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIP 602 P++ + VT+F+ +E GL+K DFLGL+TL++++ +L + G+ +D+ IP Sbjct: 523 PVW--ISEGTLVTEFDKDDVEALGLLKMDFLGLRTLSIIEDALKNIRTSHGIDIDIDNIP 580 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 +D T +L T +FQ+ES+GM ++ +QP D+I V+LYRPGP+ + +V Sbjct: 581 LEDDLTAQMLCDGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTD 640 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + + +GK+++V +HPL+ P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK Sbjct: 641 FIDGLHGKKEVVYMHPLLAPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKK 700 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 E + QKE F++G + NGI +A +IF+LL FADYGFNKSH+A+Y ++++QTA++K Sbjct: 701 KHELLMAQKESFLAGCANNGIDAPLANHIFDLLTHFADYGFNKSHSASYGLLAWQTAYLK 760 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEF+A +T MD +KI + + Q I+I+PP +N+ F + I + LA Sbjct: 761 AHYPVEFMAGVLTSIMDKTDKIPVYIRLCHQMKIRILPPDINSSAATFSIESGAIRFGLA 820 Query: 841 AIKGVG---TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 A++ VG H+ E PF SL DFC+RVD + LN+R +ESL+ GA D G Sbjct: 821 AVRNVGENAIAVLEHVREEGG--PFRSLVDFCTRVDLRILNKRAIESLIKCGAFDSLGID 878 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQ 956 R LL SL+ A +++ + +F E +I + + R E+ Sbjct: 879 RNHLLASLNAAVTDAARRQRDLLSGQIGLFGDEAMAEIQQIGDFDDVPLCTPRERLTWEK 938 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSR 1014 GFY +GHPL+ + L + G + A +R + +R+ ++ S ++ T+KG Sbjct: 939 EATGFYITGHPLEDNQETLSHLQPIG--QIAAAVRRDRQLMRVGGILTSTKRFTTKKGDT 996 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + + + E FP Sbjct: 997 MLFADLEDFTGTLEVTVFP 1015 >gi|87302218|ref|ZP_01085043.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 5701] gi|87283143|gb|EAQ75099.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 5701] Length = 1179 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1081 (37%), Positives = 601/1081 (55%), Gaps = 90/1081 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ A PA+A+TD ++ A+E + AAGI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPQMVERAVALGMPALALTDHGVMYGAIELLKLCQAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVSRMYLLDQ 124 IIG N G P V +V+L GY+ L++L S +L Sbjct: 62 IIG---------NEMYVINGSIDDPWVKGERRYHLVVLAKNDTGYRNLVKLTSLSHLRGM 112 Query: 125 GKQSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + + R C+ L E EGLI+ T G I +A VA + + FG Sbjct: 113 RGRGIFSRACIDKQLLEQHREGLILATACLGGEIPQAILKGRQDVARDVARWYHQRFGAD 172 Query: 182 LYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ +Q H DR ++V++A + L+ATN++ +LS D EAHD L+ V +V Sbjct: 173 FYLEIQDHGSPEDRIVNVELVRIARELGIELIATNDAHYLSSADVEAHDALLCVLTGKLV 232 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPR 294 + + R R T Y+K+ +EM +F+D + EA+ NT +A + + +PR Sbjct: 233 TDEKRLRYTGTEYIKSEAEMGRLFADHLEPEVVAEAIANTAAVAEKVEAYDILGRQQMPR 292 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIA 349 F + + L + AGL RL G+ D Y +RL FEL V+ Sbjct: 293 FPIPD----GHTAVSYLAEVSEAGLRQRLHLGS-------SDPIDPLYGERLAFELQVME 341 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F YFL+V D+I++A++ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLN Sbjct: 342 QMGFPTYFLVVWDYIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLN 401 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R SMPD D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY Sbjct: 402 PERKSMPDIDTDFCIERRGEVIEYVTQRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPY 461 Query: 470 SQVDRLCKLIPNDPAHPVSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHA 525 DRL KLIP P L + I +S FRE D V R +++++++EG + Sbjct: 462 GDADRLAKLIPVVRGKPAKLKEMIGPESPAPEFREKYENDAQVRRWVDMARRIEGTNKTF 521 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 HAAG+VI PL LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K+ Sbjct: 522 GVHAAGVVIAAEPLDSLVPLQRNNDGQV-ITQYFMEDVEAMGLLKMDFLGLKNLTMIDKT 580 Query: 586 LDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 LD + Q G ++D +P D +T+ LL GIFQLESSGMRQ + ++P +EDI Sbjct: 581 LDLVEQCSGERIDPDDLPPCDDDTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDIS 640 Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 ++++LYRPGP+D ++ + NRK+G+E I P ++P+LKET G+++YQEQ+M+IAQ L Sbjct: 641 SILALYRPGPLDAGLIPKFINRKHGREAIDFACPALEPILKETYGIMVYQEQIMRIAQDL 700 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GYSL EAD+LRRAMGKK EM K + +F+ GA+ G+S +A +FE + FA+Y FN Sbjct: 701 AGYSLGEADLLRRAMGKKKVSEMQKHRSQFVEGATARGVSAAVAEALFEQMVLFAEYCFN 760 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSH+ AY ++YQTA++K HYPV ++AA +T+ + +K++++ + + I++MPP +N Sbjct: 761 KSHSTAYGAVTYQTAYLKAHYPVAYMAALLTVNASSTDKVQRYIANCQAMGIEVMPPDLN 820 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRV 881 +DF +I + L+A++ +G R ++EA D PF SL D C R+ + +NRR Sbjct: 821 ASGIDFTPKGEKILFGLSAVRNLGDGAIRQLLEARVQDGPFASLADLCDRIPTTLMNRRA 880 Query: 882 LESLVFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRTNKHENIF------------ 927 LESL+ GALD S R QL+ LD + +A ++R + N+F Sbjct: 881 LESLIHCGALDGLEPSANRAQLMADLDLVLDWASSRARDRASGQGNLFDLFATPGEAAGS 940 Query: 928 ------------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL-DVYKPI 974 A + +D EK + E+ ++GFY S HPL + +PI Sbjct: 941 AAAEPGPANQSTAPKAAPVADYPPKEKLRL---------EKELVGFYLSDHPLRQLARPI 991 Query: 975 --LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 L + + EE R + + AM+ +Q TRKG R+ + + + E F Sbjct: 992 RMLSPISLGRLEEQADKAR---VSVVAMLPEVRQVTTRKGDRMAVLQLEDLSGSAECVVF 1048 Query: 1033 P 1033 P Sbjct: 1049 P 1049 >gi|229192805|ref|ZP_04319763.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 10876] gi|228590644|gb|EEK48505.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 10876] Length = 1105 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/1032 (36%), Positives = 608/1032 (58%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+I Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVI 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ + + +VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPEFISRVNISVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307 D +YLK+ EM ++FS PEA++NT++IA RC + H LP+F E DI Sbjct: 224 DQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVPSNETSDIY--- 280 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR GL R + K H + RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 281 ---LRRVCEEGLRKRYGE---PKEVHIK----RLDHELNVISRMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENYILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G NG ++T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLGNGYNETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 808 GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSI 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ LGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|251778887|ref|ZP_04821807.1| DNA polymerase III subunit alpha [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083202|gb|EES49092.1| DNA polymerase III subunit alpha [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1202 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1004 (38%), Positives = 582/1004 (57%), Gaps = 59/1004 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+G+ + I+ K +IAITD L+ ++F + A GI+PI Sbjct: 19 FVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAAIEYGIKPI 78 Query: 71 IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC++ + + +K ++ + + +VLLV GY+ L+++VS + + Sbjct: 79 LGCEVYVAGKSMKIKQPDKDNSTY----HLVLLVKNEIGYRNLMKIVSTASI-EGFYYKP 133 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ +L+ ++G+I L+ G + + + A++ L +K++F + Y+ +Q H Sbjct: 134 RVDHEYLKA-HSDGIIALSACLGGEVQSHELKGNYEKAKETALLYKEIFKENFYLEIQNH 192 Query: 190 RGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G D R+ + + EL PLVATN+ +L ++ Y++HD+LM + V +R R Sbjct: 193 -GMDEQRKVNEENIKLSKELGIPLVATNDVHYLKKDGYKSHDILMCIQTGKTVDDVNRRR 251 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D YLK+ EM +FS +PEALENTV+I+ +C++ + H LP+F E + E Sbjct: 252 YPSDQFYLKSPEEMWEMFSYIPEALENTVKISEQCNYEYKFHESKLPKFPLPEGE----E 307 Query: 307 EENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVIARM 351 N L+N GL R + +K ++ RL++EL +I +M Sbjct: 308 PYNYLKNTCYMGLIERYEEFKEFRGKDLNYDKLDDLKSKNDSVKELIDRLEYELQIIKQM 367 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 + YFLIV DFI++A N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+ Sbjct: 368 GYIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFLNPE 427 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD D DFC +RR EVI YV KYG + V+QIITFG++ A+A +RDVGRA+ YS+ Sbjct: 428 RVSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYSYSE 487 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 VD++CK+IP + +A+ + +E D V L+++S+ LEGL RH+STHAAG Sbjct: 488 VDKICKMIPTMLGITIE-KALDFNPELKEIYDKDDRVKSLIDMSKDLEGLPRHSSTHAAG 546 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI PL Q VP+ ++ ++ VTQF M +E+ GL+K DFLGL+TLT++ ++L + + Sbjct: 547 VVIASTPLVQYVPLQKN--DEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKIIKE 604 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 R + +DL I F+D E Y ++ T G+FQLES GM ++ ++PD +EDIIA +SLY Sbjct: 605 NRNIDIDLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGISLY 664 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+ I Y K EK+ P ++ +L T GV++YQEQVM+I + L+GYS+ + Sbjct: 665 RPGPMAEIPRYIECKRNPEKVKYEAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSMGRS 724 Query: 711 DVLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADY 759 D++RRAM KK + M+++++ FI G +NGIS+ A IF+ + FA Y Sbjct: 725 DMVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDFASY 784 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAV+ YQTA++ +YPVE +AA + M + EK+ + A + IQ++PP Sbjct: 785 AFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQVLPP 844 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878 +N F V I + LAAIK VG +++ +K FDSL DF S++D +N Sbjct: 845 DINESFAKFTVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLSAIN 904 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +R +ESL+ +G D F R +LL Y + V+ ++ NI SD I Sbjct: 905 KRTIESLIKSGTFDSFKIYRSKLLAV------YEKMVDSISNDRKRNIDGQISLFASDDI 958 Query: 939 TLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILR 976 + + N + F+ E+ + G Y SGHPLD Y L+ Sbjct: 959 YVPEIEYPNIN-EFDKRSLLTMEKEMTGLYISGHPLDDYAQSLK 1001 >gi|228929651|ref|ZP_04092669.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830038|gb|EEM75657.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 1105 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1032 (36%), Positives = 608/1032 (58%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PII Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPII 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E N Sbjct: 224 DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNETN 277 Query: 310 E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 278 DMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +K+ ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKVVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 808 GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSL 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ VLGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|228987852|ref|ZP_04147961.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771900|gb|EEM20357.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1105 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1032 (36%), Positives = 608/1032 (58%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PII Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPII 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGN-FYMSLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E N Sbjct: 224 DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPANETN 277 Query: 310 E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 278 DTYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 808 GMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSL 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ VLGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|229087161|ref|ZP_04219310.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-44] gi|228696133|gb|EEL48969.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-44] Length = 1109 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/1030 (36%), Positives = 611/1030 (59%), Gaps = 54/1030 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HLQ + +SLL+ A ++ I+ + ++AITD N ++ + F + GIQPI Sbjct: 3 FAHLQCQTVFSLLKSACKIDEIVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSGEEEGTYP----LVLLAENEIGYQNLLKISSA--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GL+ ++ G G I++ ++AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLVAISPGKDGEIEQLLLQGRDELAEEVARAYQNMFGS-FYMSLQHHA 165 Query: 191 GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + + ++ Q A +P+VATN+ ++++ D + L++V T ++ DRPR+ Sbjct: 166 IQDELFLQEKLPQFASEIGIPMVATNDVRYVNQSDALVQECLLSVQGGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ +EM ++FS EAL+NTV IA RC + LP+F + E Sbjct: 226 TDQYYLKSSAEMGALFSHEEEALQNTVRIAERCHVEIPFQVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ LR GL+ R A + + H R+RL+ EL VI+RM FS YFLIV DF+++ Sbjct: 280 SDAYLRRICDEGLQKRYA---VIETVH----RERLNHELAVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +++I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHEHDILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P ++D KLIP+ Sbjct: 393 RDEMIRYVKDKYGPLRVAQIVTFGTLAAKAAIRDIARVMGLPPREIDIFSKLIPSKIG-- 450 Query: 487 VSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S RE + +R+ EI++++EG+ RH S HAAG+++ PL+ V + Sbjct: 451 ITLKEAYEESVPLREFVQGNLLHERVFEIAKRVEGMPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ + +E+ GL+K DFLGL+ LTLL+ LDF+ + G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPAEVLEELGLLKMDFLGLRNLTLLENILDFIVTKTGKQIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L ++P+ EDI+A+ +LYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK +I +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK +E Sbjct: 630 KHGKCQIQYLHPDLKPILENTYGVIVYQEQIMQIASRLAGFSLGEADLLRRAVSKKNREI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP Sbjct: 690 LDQERKHFVQGCLRNGYDETAAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYP 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ +++PPS++ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFRVLPPSLHRSSYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E PF L +FC R+ +K + R LE+ ++AG D F SR L S Sbjct: 810 IGMATVTAVIEERERNPFQDLFEFCLRMPAKFVTERNLEAFIWAGCFDDFQVSRTTLFNS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYF 963 + +YA A E G S ++ E S + + NE+ LGFY Sbjct: 870 MKGALEYAS-------------LARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYL 916 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 S +P Y +++++ I +++ R R + + +T+K ++ ++TF + Sbjct: 917 SSYPTAQYAKLVKELEIPSIAQAMRQKRKVQ-RAIVYITGVKVIRTKKMQKMAFITFCDQ 975 Query: 1024 AKEYEANFFP 1033 E EA FP Sbjct: 976 NDEMEAVVFP 985 >gi|229099065|ref|ZP_04229999.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-29] gi|228684293|gb|EEL38237.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-29] Length = 1108 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1033 (36%), Positives = 608/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAEDEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ T++ +F D Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKEDQAEEVACTYQNMF-DNFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISKVNVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS EA+ NTV+IA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL R G + + +RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDTYLRRACEEGLHKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ ++ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ +K + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVVFP 984 >gi|229076107|ref|ZP_04209075.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-18] gi|228706970|gb|EEL59175.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-18] Length = 1108 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1033 (36%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKYGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAEDEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS EA+ NTV+IA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL R G + + +RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDTYLRRVCEEGLHKRY-------GAPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ ++ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ +K + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVVFP 984 >gi|153941212|ref|YP_001392730.1| DNA polymerase III DnaE [Clostridium botulinum F str. Langeland] gi|152937108|gb|ABS42606.1| DNA polymerase III, alpha subunit [Clostridium botulinum F str. Langeland] gi|295320711|gb|ADG01089.1| DNA polymerase III, alpha subunit [Clostridium botulinum F str. 230613] Length = 1185 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/1076 (35%), Positives = 623/1076 (57%), Gaps = 57/1076 (5%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 Q+ EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++ Sbjct: 4 NQFDEKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKE 63 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 A GI+PIIGC++ + ++ + Q K +VLLV GY+ L+E+VS + Sbjct: 64 AIKQGIKPIIGCEIYV-ASKSMYIKQQDKEN--ETHHLVLLVKNEIGYKNLMEIVSNASV 120 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + R+ +L++ +EGLI L+ G + + + A + L +K +F + Sbjct: 121 -EGFYYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAGEVALIYKDIFKEG 178 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ H ++ + ++ +V+++ ++PLVATN+ ++ +EDY++HD+L+ + V Sbjct: 179 FYLELQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTV 238 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEK 298 +++R R D YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E+ Sbjct: 239 EEENRMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEE 298 Query: 299 ECDDIQKEEENELRNKAVAGLEVR--LAQGAIAKGY-------------HAQDYRQRLDF 343 D + LR GL +R + + I K + A D +RL++ Sbjct: 299 GVDPYEY-----LRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNY 353 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL++I +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+ Sbjct: 354 ELSIIKQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLI 413 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+A +RDVGR Sbjct: 414 FERFLNPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGR 473 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 A+ PY++VDR+ K+IP ++ +A+ + +EA + V L+++++ LEGL R Sbjct: 474 AMNYPYAEVDRIAKMIPTVLNITIN-KALELNPELKEAYDNEERVKALIDVARALEGLPR 532 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 H STHAAG+VI + L VP+ ++ S VTQF M +E+ GL+K DFLGL+TLT+++ Sbjct: 533 HTSTHAAGVVIASQSLVNYVPLQKNEES--IVTQFTMGTLEELGLLKMDFLGLRTLTVMR 590 Query: 584 KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ + + +G+ +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +ED Sbjct: 591 DAVRIIKENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLED 650 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIA +SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L Sbjct: 651 IIAGISLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDL 710 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLA 754 +GYS+ +D++RRAM KK + M++++ FI G NGI + +A ++F+ + Sbjct: 711 AGYSMGRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMM 770 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A+ I Sbjct: 771 DFASYAFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGI 830 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 +I+ P++N +F V DNRI + L A+K VG +I+ + K F L DF ++VD Sbjct: 831 EIIAPNINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVD 890 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + +N+R++ESL+ AGA DC R ++L + I Q ++N N+F Sbjct: 891 TSIINKRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDN 950 Query: 934 FSDKITLEKFSVENSSVRF--ENEQRVLGFYFSGHPLDVYKPILR------------KMG 979 I ++ +++ ++ + E+ + G YFSGHPL+ Y+ L+ K Sbjct: 951 KESSIDIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKES 1010 Query: 980 IKG-YEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++G +++++I+ G+ + + M+ +K TR + ++ + E FP Sbjct: 1011 LEGNLVDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|229158207|ref|ZP_04286274.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 4342] gi|228625165|gb|EEK81925.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 4342] Length = 1105 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1032 (36%), Positives = 608/1032 (58%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PII Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPII 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 106 PKKWLVHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGN-FYMSLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E N Sbjct: 224 DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPANETN 277 Query: 310 E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR GL+ R G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 278 DTYLRRVCEEGLQKRY-------GTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 808 GMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSL 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ VLGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|145588791|ref|YP_001155388.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047197|gb|ABP33824.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 1204 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1019 (38%), Positives = 585/1019 (57%), Gaps = 77/1019 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP FVHL++HS +S+ +G + +++ + D+ A+A+TD +NLF + F A + GI Sbjct: 3 SPRFVHLRIHSEFSITDGVVRIDDAVATAVKDEMGALALTDLSNLFGLVRFYTAARSGGI 62 Query: 68 QPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQG 125 +PI G + + + QD P P ++LLV GY L +L+S+ L +Q Sbjct: 63 KPIAGADVWVSNPQD------------PDQPHRLLLLVQNHSGYLNLCQLLSKASLDNQS 110 Query: 126 KQSVRICLSWLQEIGTE------------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 + + L+W E + GLI L+ +G + A + +A+ L Sbjct: 111 RGRAEVDLAWFSEPAAKAEDKAAKRTMAYGLIALSAARNGEVGAALLADQEDMAKAAALR 170 Query: 174 FKKLFGDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +KLF Y+ +QR + Q+ LA +LP+VAT+ F+ D+ AH+ + Sbjct: 171 LEKLFPKSFYIEIQRGGHPQDEKHLQLACHLASELKLPVVATHPVQFMQRSDFIAHEARV 230 Query: 233 AVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 +A ++ R + + Y + EM F+DLP A+ N+VEIA+RC+ L + P Sbjct: 231 CIAEGELLGNPRRQKKFNDEQYFLTQEEMEKRFADLPAAIANSVEIAKRCNLSLVLGQPR 290 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVI 348 LP F + ++ L ++ GLE + + A++ Y RL FE+ I Sbjct: 291 LPDFPTPPGITL----DDYLLQQSEVGLERHMEKNFPDPEERAKEMSRYHDRLVFEVKTI 346 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 ++M F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFL Sbjct: 347 SQMGFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFL 406 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPDFDIDFCQ RD VI+YV++KYG + V+QI TFG++ A+AA+RDVGR L+ Sbjct: 407 NPERVSMPDFDIDFCQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQG 466 Query: 469 YSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 Y+ VD + KL+PN P ++++ A ++ + E + V +LL ++Q+LEG+ R+ Sbjct: 467 YNFVDGIAKLVPNKPGQYMTIEMAKKEEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGM 526 Query: 528 HAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HA G++I L+ P+Y +D S ++QF+ +E GL+KFDFLGL TLT+L Sbjct: 527 HAGGVLIAPGRLTDFCPLYTQESKDQDSSSVISQFDKDDVEAIGLVKFDFLGLTTLTILA 586 Query: 584 KSLDFLAQRGVKV--------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 A+R +K D+ IP DD + + +L T+ +FQLES GM+ L Sbjct: 587 A-----AERWIKALHADRKDWDIGEIPLDDEKAFDVLKKANTVAVFQLESRGMQGMLREA 641 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695 +PD EDIIALV+LYRPGP+D I + RK+G++K+ P I+P+L+ET G+++YQEQV Sbjct: 642 KPDRFEDIIALVALYRPGPMDLIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQV 701 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQ+AQ++ GYSL AD+LRRAMGKK EEM + ++ F GA GIS+ A I++L+ + Sbjct: 702 MQMAQMIGGYSLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEAKANEIYDLMER 761 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA YGFNKSHAAAYA+++YQTAW+K +YP EF+AA+++L MD+ +K+K D I+ Sbjct: 762 FAGYGFNKSHAAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNQIR 821 Query: 816 IMPPSVNTPCVDF---KVGD-------NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864 + P +NT +F + D + I Y L A++G G I++A AD PF Sbjct: 822 VFSPDINTGVYEFTPLRAPDATPDSPISHIRYGLGAVRGTGEAAIESIVKAREADGPFKD 881 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-----------RMQLLQSLDNIQKYAQ 913 L DFC+RVD +++NRR +E+L+ AGA D R LL SL + A+ Sbjct: 882 LFDFCARVDRRQVNRRAIEALMRAGAFDSLYRDSVPAGGNLYDIRSTLLASLARAIEAAE 941 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 E + A E+ ++ E E R + E+ LG +GH D Y+ Sbjct: 942 QAEASIHQVSLFEVAGEEHRHLPELVREPIWSEKK--RLQEEKASLGLCLTGHMFDAYR 998 >gi|311069419|ref|YP_003974342.1| DNA polymerase III DnaE [Bacillus atrophaeus 1942] gi|310869936|gb|ADP33411.1| DNA polymerase III DnaE [Bacillus atrophaeus 1942] Length = 1113 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1035 (37%), Positives = 607/1035 (58%), Gaps = 55/1035 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQVHS YSLL A ++ ++ + ++A+TD + ++ A++F + A GI+P Sbjct: 2 SFVHLQVHSGYSLLNSAAAVEELVKEADTLGYTSLALTDDHVMYGAIQFYKACKARGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + +N P +VLL + GYQ L+++ S + Q K Sbjct: 62 IIGLTASVFTDEN---------EVEACP-LVLLAKSNMGYQNLLKISSVL----QSKSKE 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 + WL+ EG+I +T G G I+ AE+ L + +FG D Y+ Q Sbjct: 108 GLKQKWLKSY-REGIIAITPGEKGYIETLLEAGLYDKAEQSALELQSVFGTDAFYLGYQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +G ++ +++L+ +P+ AT + ++ +ED A+ L A+ ++ +R Sbjct: 167 FKG-NQALSDHILRLSAKTGIPVAATGDVHYIRKEDKTAYRCLKAIKAGEKLADLNREE- 224 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 TPD LK+ EM + + PEAL +V+IA +C + + LP F + K + Sbjct: 225 TPDLDLKSIEEMRMFYQEHPEALSASVQIAEQCHVDVNLGQTRLPSFPAPDG----KPAD 280 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVADFIQW 366 L +G++ R + + D R +RL +EL+VI RMKFS YFLIV DF+++ Sbjct: 281 EYLAELCFSGMKER---------FKSPDERVIRRLQYELDVIKRMKFSDYFLIVWDFMKY 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N I GPGRGS AGS+ AY L IT++DP++ +LLFERFLNP+R+SMPD DIDF R Sbjct: 332 AHENGIVTGPGRGSAAGSLVAYVLYITNVDPIKHNLLFERFLNPERVSMPDIDIDFPDTR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+I+YV+NKYG AQIITFG+L AKAALRDVGR + + D+L KLIP+ P Sbjct: 392 RDEMIQYVKNKYGAMHAAQIITFGTLAAKAALRDVGRVFGVNPKEADQLAKLIPSKPG-- 449 Query: 487 VSLQAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L+ S RL + S+ ++ I++K+EGL RH STHAAG+V+ + PL+ +VP+ Sbjct: 450 VTLEDARKMSPQLNQRLNESSLLSQVFSIAKKIEGLPRHTSTHAAGVVLSEEPLTGIVPL 509 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604 ++ + +TQ+ M +E GL+K DFLGL+ LTL++ + + +K+D S I +D Sbjct: 510 -QEGHEGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKEEKIKIDFSSISYD 568 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL+ T G+FQLESSGMR L ++P +EDI+A+ +LYRPGP++NI ++ +R Sbjct: 569 DEKTFSLLSKGDTTGVFQLESSGMRSVLRRLKPTGLEDIVAVNALYRPGPMENIPLFIDR 628 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ + H + +LK+T GVI+YQEQ+M IA ++G++L EAD+LRRA+ KK K+ Sbjct: 629 KHGRVPVHFPHNDLKDILKDTYGVIVYQEQIMVIASKMAGFTLGEADLLRRAVSKKKKDI 688 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D+++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I Q A++K HYP Sbjct: 689 LDRERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYP 748 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 + F+ +T + N +KI ++ +A+ I+I+PPSVN F V + + YSL A+K Sbjct: 749 LYFMCGLLTSVIGNEDKIAQYLYEAKGNGIRILPPSVNKSSFPFTVENGAVRYSLRAVKN 808 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG + + I +A DK F+ L DFC RV SK +NR+ +E+L+ +GA+D FG +R LL S Sbjct: 809 VGVSAVKDIYKARKDKKFEDLFDFCFRVPSKSVNRKTIEALILSGAMDEFGQNRATLLAS 868 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYF 963 +D ++A+ + + +F E + K + E+F + + ++FE E LG YF Sbjct: 869 IDVAAEHAELFSAD--DDQMGLFLEESFSIKPKYVETEEFPLVD-LLQFEKE--TLGIYF 923 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWV 1018 S HPL ++ L G +V ++ I L A+V + +T+ G + ++ Sbjct: 924 SSHPLSAHRDRLSARG------AVPILKAQQSEKKQILLGALVTKTKTIRTKTGQNMSFL 977 Query: 1019 TFSEPAKEYEANFFP 1033 T S+ E EA FP Sbjct: 978 TLSDETGEIEAVVFP 992 >gi|220931162|ref|YP_002508070.1| DNA polymerase III catalytic subunit, DnaE type [Halothermothrix orenii H 168] gi|219992472|gb|ACL69075.1| DNA polymerase III catalytic subunit, DnaE type [Halothermothrix orenii H 168] Length = 1122 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/1038 (36%), Positives = 612/1038 (58%), Gaps = 38/1038 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + +FVHL VH+ YSLL+GA+ L +++ K P +AITD L+ A++F + A GI Sbjct: 2 TANFVHLHVHTEYSLLDGAIRLKDLVKKTKEYDMPGVAITDHGVLYGAIDFYKLARQYGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC++ + K + + ++L+ EGY L ++VSR +L + Sbjct: 62 KPIIGCEVYLTPSSFRKKDTRERY------HLLLIAQNREGYHNLTKIVSRSWL-EGFYY 114 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ L + +GLI L+ G I + + Q AE+ + ++ +FG + Y+ L Sbjct: 115 KPRVDKDLLYQ-HRKGLICLSSCLQGEIPQLILKDRLQEAEQAIKEYEAIFGRESFYLEL 173 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H G ++ S++++L+ PLV TN+S +L+ ED HDVL+A+ ++ ++R Sbjct: 174 QDHNLGDEKLVNSRLIELSNKLGTPLVVTNDSHYLNREDASLHDVLLAMQTGKTINDENR 233 Query: 246 PRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 T + Y K+ EM S+F D+ + NTV+IA + +P F + + D Sbjct: 234 LSFTGEEFYFKSPDEMKSLFPDIEDTYLNTVKIAEMTDIDFDFNTFYIPDFPDAKGDKTP 293 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYH-AQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E LR+K GL+ KG ++ R+RL +EL +I M + YFLIV DF Sbjct: 294 VEI---LRDKCQQGLK--------EKGLEDNKEARERLQYELEIIEEMGYVSYFLIVWDF 342 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 + +A++ I VGPGRGS AGS+ +Y L IT I+PL++ L+FERFLNP+R++MPD DIDF Sbjct: 343 VNFARQKGIRVGPGRGSAAGSLVSYLLGITKINPLKYGLIFERFLNPERVTMPDIDIDF- 401 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RRDE+I YV+ +YG E+VAQI TFG++ A+AA+RDVGR L +P +VDR+ K++P Sbjct: 402 DERRDEIIEYVKQRYGREKVAQIGTFGTMAARAAIRDVGRVLDIPLRKVDRIAKMVP--- 458 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +A+ + + D V RLL+ + ++EG+ RH STHAAG++IG LS ++ Sbjct: 459 GRVTIKEALKMNDNLNKLYQQDSEVKRLLDYACRVEGMPRHISTHAAGVIIGPGDLSNII 518 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602 P+ + + +TQF+M+ +E+ GL+K DFLGL+ LT++ K+L+ +++R G ++D+ IP Sbjct: 519 PL--QTQDENIITQFHMENLEELGLLKMDFLGLRNLTIINKTLNLISKRYGREIDVDNIP 576 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 +D Y +L T G+FQ+ES + ++P+ D+IAL++L RPGP+ + +V Sbjct: 577 LNDDRVYKMLQEGKTPGVFQMESRLFQDLNRRLKPEKFSDLIALLALGRPGPLGSNLVEQ 636 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y ++G+ + +HP ++P+L+ET G+I+YQEQVM+IA L+GY++ EAD+LRR MGKK Sbjct: 637 YIKSRHGEIEPSYLHPELEPILEETFGLILYQEQVMEIASKLAGYTMGEADLLRRGMGKK 696 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 KE + K++ERF+ GA KNGI K +A IF+ + FA YGFNKSH+ AYA+++YQTA++K Sbjct: 697 KKELISKERERFVEGAVKNGIEKEVAHKIFDQMEYFAGYGFNKSHSTAYAMLAYQTAYLK 756 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839 +YP EF+AA ++ M+N++K+ ++ ++ ++ ++++PP VN +F+ D I + L Sbjct: 757 ANYPSEFMAALLSTVMNNLDKVGQYIRECQEMGLRVLPPDVNRSGFEFETTPDGDISFGL 816 Query: 840 AAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIK VG I+E + + + SLEDF RVD+ ++N +V+ESL+ AG D F R Sbjct: 817 KAIKNVGIKAIEAIIEERNRNGNYSSLEDFIERVDTGRVNLQVIESLIKAGVFDSFNTYR 876 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHE---NIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 Q+L + I + +NR ++F+ ++ ++ I + R E Sbjct: 877 SQMLIKYEEIYEKLGSRSRNRAQGQTSFFDLFSEDEKFYNQSIEYPEIEELPLEERLNQE 936 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LG Y S HPLD +K + I + + G+ + + +VV ++ TR ++ Sbjct: 937 KEYLGIYLSAHPLDPFKDKIDHF-ISTTSQDIKDYEGDKVTIGGVVVDFKEHITRTNKKM 995 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++T + + FP Sbjct: 996 AFLTLEDWLGNIKVVVFP 1013 >gi|229118095|ref|ZP_04247454.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-3] gi|228665318|gb|EEL20801.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-3] Length = 1108 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1033 (36%), Positives = 607/1033 (58%), Gaps = 61/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEEKSYP----LVLLAEDEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ T++ +F D Y+ LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKEDQAEEVACTYQNMF-DNFYMCLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFISKVNVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS EA+ NTV+IA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL R G + + +RL+ ELNVI+ M FS YFLIV DF+++ Sbjct: 280 NDTYLRRACEEGLHKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ ++ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E K F+ L +FC R+ +K + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA A + G D + K+ V+ + F E+ LG Sbjct: 870 LKGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALG 912 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 FYLSSYPTAQYVKLAKELEIPSLAQAMRNKKKVQ-RAIVYITSVRVIRTKKLQKMAFITF 971 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 972 CDQNDEMEAVVFP 984 >gi|255994597|ref|ZP_05427732.1| DNA polymerase III, subunit alpha [Eubacterium saphenum ATCC 49989] gi|255993310|gb|EEU03399.1| DNA polymerase III, subunit alpha [Eubacterium saphenum ATCC 49989] Length = 1182 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1081 (37%), Positives = 608/1081 (56%), Gaps = 85/1081 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VHS YSLL+GA + +++ + A ++A+TD +F +EF ++ GI+P Sbjct: 2 SFTHLHVHSEYSLLDGAARIRDLVAEAARFGMKSLALTDHGTMFGVVEFYKECKKQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + ++++ Q K+P ++LLV EGY+ LI+LVS +G Sbjct: 62 IIGCEVYV-ARGSIEV--QEKSP----NHLILLVKNEEGYKNLIKLVS--IANKEGFYYK 112 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 L E ++GLI L+ +G I + + A+K + ++ ++G+ Y+ +Q Sbjct: 113 PRIDENLMERFSKGLIALSACPAGRIPELILEGNYEEAKKTAIKYRDIYGEGNFYLEIQN 172 Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G D+ + ++ +++ + LVATN+S ++ +ED + HDVL+ + +S + R Sbjct: 173 H-GLDKEQIINRELTKMSEETGIKLVATNDSHYVKKEDAKMHDVLLCIKTGARLSDEVRM 231 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + D YLK+ EM +F +A+ENT+E+A +C+F ++ LP F E + Sbjct: 232 KFPSDDFYLKSEDEMRMLFPGQTKAIENTLEVAEKCNFDFDFNSQHLPDFEVPEGET--- 288 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 +E LR GLE R + R+RL+FEL+ I M + YFLIV DFI Sbjct: 289 -KEGYLRKLCCEGLEKRHKN-------VTNELRERLEFELDTIHNMGYDEYFLIVHDFIH 340 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK IPVGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD DIDFC+D Sbjct: 341 YAKTRGIPVGPGRGSAAGSLVSYCLDITCVDPIKYNLLFERFLNPERVSMPDIDIDFCKD 400 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV +KYG +RVAQI+TFG+L+AKAA+RDVGR + Y +VDRL K +P P Sbjct: 401 RRQEVIDYVIDKYGDDRVAQIVTFGTLKAKAAIRDVGRIMNAGYGEVDRLAKAVP--PGL 458 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L DS F+E +++++ +LEG+ R+A THAAG+VI + VP+ Sbjct: 459 GVTLSDALKDSNFKELYEEGEDSKEVVDMALQLEGMVRNAGTHAAGVVISKESIDSYVPI 518 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 Y+ + TQ M IE+ GL+K DFLGLK LT+++ + + + G+K++ +D Sbjct: 519 YKSDKG--FCTQMTMTTIEELGLLKMDFLGLKNLTVIENCKNMVYRNHGIKINFDDSNYD 576 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + Y L+++ T GIFQLES GM + ++ ++PD IEDIIA +SLYRPGP+D+ Y Sbjct: 577 DSKVYELISSGNTEGIFQLESEGMTEFMKDLKPDSIEDIIAGISLYRPGPMDSKDNYIFN 636 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K ++I HP + P+L T G ++YQEQVMQI + L+GYS AD++RRAM KK +E Sbjct: 637 KRHPDRIKYKHPALKPILSLTYGCLVYQEQVMQIVRELAGYSYGRADLVRRAMSKKKADE 696 Query: 725 MDKQKERF------------------------------ISGASKNGISKTIAVNIFELLA 754 M K++E F + G K GI K + IF+ + Sbjct: 697 MAKEREIFLFGTENEYWAEENEKSCKISDAPVTDDEEVVEGCVKRGIPKEVGNEIFDEME 756 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAAAYAVISYQTA++K HYPVEF+A+ + N K+ ++ ++AR NI Sbjct: 757 SFASYAFNKSHAAAYAVISYQTAYLKAHYPVEFMASLLASASGNDGKMARYIKNARDMNI 816 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA--SADKPFDSLEDFCSRV 872 +I+PP VN V F+ N I + LA +K VG A HI++ S K +D++ F + Sbjct: 817 EILPPDVNKSGVTFEARGNEILFGLADVKNVGDNAADHIVKVRESKGKAYDNMYTFVQDM 876 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 D K+N+ VLE+L+ AGA F + L ++ + + K T ++F Sbjct: 877 DISKVNKSVLENLIRAGAFRDFEGTMAANLSIYNDALEQKKKSNKGITADQMSLFEEGEI 936 Query: 930 EKGTFSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL--RKMGIKGY--- 983 E FS KI + +F + ++FE E LG Y + HP+ Y+ L R + G Sbjct: 937 EGEQFSQKIPNIPEFK-DAQKMKFEKE--ALGMYLTTHPMKEYEQYLEGRITDVLGNINP 993 Query: 984 ------EESVATI-----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 EE VA+ G ++LA ++ + + T+KG + + + E F Sbjct: 994 EADSDDEEDVASKSSAYREGQRVKLAGLITTVKTIVTKKGEMMAFANLEDMTGRMEMVIF 1053 Query: 1033 P 1033 P Sbjct: 1054 P 1054 >gi|153815935|ref|ZP_01968603.1| hypothetical protein RUMTOR_02180 [Ruminococcus torques ATCC 27756] gi|317500700|ref|ZP_07958918.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|145846754|gb|EDK23672.1| hypothetical protein RUMTOR_02180 [Ruminococcus torques ATCC 27756] gi|316897894|gb|EFV19947.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] Length = 1157 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1051 (37%), Positives = 614/1051 (58%), Gaps = 48/1051 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F ++A + GI P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREAKSQGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + N + + +VLL EGY L+++VS+ ++ + Sbjct: 62 ILGCEVYV--APNSRFDREVTGGEDRYYHLVLLAENNEGYANLMKIVSKGFV-EGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ + G+I L+ +G + R A+K L ++ +FG D Y+ LQ Sbjct: 119 RVDKELLRKYHS-GIIALSACLAGEVSRYLMKGLYDEAKKAALEYRDIFGKDHFYLELQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ Q+++++ + LVATN+ + +D +AHD+L+ + ++ ++R R Sbjct: 178 HGLPDQGLVNQQLLKMSRETGIELVATNDVHYTYAKDEKAHDILLCIQTGKRLADENRMR 237 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM S+F +ALENT +IA RC ++ LP++ + D Sbjct: 238 YEGGQYYIKSEEEMKSLFPYALQALENTQKIADRCLVEIEFGVTKLPKY---DVPDGYTS 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E LR GLE R A+ A + R+RLD+EL I M + YFLIV DFI++ Sbjct: 295 WEY-LRKLCYEGLEKRYAE-------RADELRERLDYELGTIKNMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG+L A+ +RDVGR + MPY+ VD + K+IP +P Sbjct: 407 RQEVIDYVVGKYGKDRVVQIVTFGTLAARGVIRDVGRVMDMPYAFVDSIAKMIPQEPKMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R+ D V L+E++++LEGL RH+S HAAG+VI + + + VP+ Sbjct: 467 IE-KALKVNPELRKMCEDDEEVKYLIEMAKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R + TQF M +E+ GL+K DFLGL+TLT++Q ++ ++ V++ + +DD Sbjct: 526 RAADGSV-TTQFTMTTLEQLGLLKMDFLGLRTLTVIQNAVLMARKKDPSVNMDTLDYDDK 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + T T GIFQLES+GM+ ++ ++P+ +ED+IA +SLYRPGP+D I Y KN Sbjct: 585 KVLEYIGTGKTDGIFQLESAGMKSFMKELKPNSLEDMIAGISLYRPGPMDFIPQYIKGKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I P ++P+L T G I+YQEQVMQI + L+GYSL +D+LRRAM KK EEM Sbjct: 645 DASSISYDCPQLEPILNSTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKGEEMK 704 Query: 727 KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 ++++ F I G KNGI + +A I++ + FA+Y FNKSHAAAYAV++YQTAW Sbjct: 705 RERQIFLYGDEASGIPGCVKNGIDEQVANKIYDEMLDFANYAFNKSHAAAYAVVAYQTAW 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVE++AA MT +DN K+ ++ +RQ IQI+PP +N DF V + I Y Sbjct: 765 LKYYYPVEYMAALMTSVIDNPSKVAEYIYASRQMGIQILPPDINNGEADFSVDEGNIRYG 824 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGY 896 L+AIK VG R ++E P+ +LEDF +RV SK+ LN+R +E+L+ AGALD G Sbjct: 825 LSAIKSVGRPVVRAMLEERRTFGPYKNLEDFITRVSSKEGLNKRTIENLIKAGALDTLGG 884 Query: 897 SRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVR 951 +R Q + Q +D++ + ++ + + + + EK F ++ + ++S EN + Sbjct: 885 TRKQFMSIYIQIMDHVNQEKKYSMSGQMSLFDLVGEEEKADFQIRMPDVGEYSKEN-KLA 943 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKG------YEESVATIR---GNNIRLAAMVV 1002 FE E VLG Y SGHPL+ ++ R+M I ++E + + G + M+V Sbjct: 944 FEKE--VLGVYISGHPLEEHEERWRRM-ISATTADFQFDEELNRTKVHDGEKSVVGGMIV 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K T+ + ++T + E FP Sbjct: 1001 DKTVKYTKTNQVMAFLTLEDLLGTVEVVIFP 1031 >gi|330001663|ref|ZP_08304089.1| putative DNA polymerase III subunit alpha [Klebsiella sp. MS 92-3] gi|328537605|gb|EGF63825.1| putative DNA polymerase III subunit alpha [Klebsiella sp. MS 92-3] Length = 788 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/800 (44%), Positives = 504/800 (63%), Gaps = 34/800 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AGI+ Sbjct: 4 PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G D +Q +L + +L + GYQ L L+SR Y G Sbjct: 64 PIVGA--DFHVQCDLLGDE--------FTELTVLAANNTGYQNLTLLISRAYQRGYGALG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL E EGLI+L+GG G + + + + E+ + +++ F DR ++ L R Sbjct: 114 PWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA LP+VATN+ FL D++AH++ +A+ + RPR Sbjct: 173 TGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDPKRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ LP+F + Sbjct: 233 NYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPQFPTGDM-----T 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + +Y QRLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLA-KAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D+ Sbjct: 527 PLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEGPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + Sbjct: 587 AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646 Query: 659 VVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAAS 791 +SYQT W+K HYP EF+AA Sbjct: 767 VSYQTLWLKAHYPAEFMAAG 786 >gi|331089825|ref|ZP_08338718.1| hypothetical protein HMPREF1025_02301 [Lachnospiraceae bacterium 3_1_46FAA] gi|330403522|gb|EGG83080.1| hypothetical protein HMPREF1025_02301 [Lachnospiraceae bacterium 3_1_46FAA] Length = 1157 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1051 (37%), Positives = 614/1051 (58%), Gaps = 48/1051 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F ++A + GI P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREAKSQGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + N + + +VLL EGY L+++VS+ ++ + Sbjct: 62 ILGCEVYV--APNSRFDREVTGGEDRYYHLVLLAENNEGYANLMKIVSKGFV-EGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ + G+I L+ +G + R A+K L ++ +FG D Y+ LQ Sbjct: 119 RVDKELLRKYHS-GIIALSACLAGEVSRYLMKGLYDEAKKAALEYRDIFGKDHFYLELQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ Q+++++ + LVATN+ + +D +AHD+L+ + ++ ++R R Sbjct: 178 HGLPDQGLVNQQLLKMSRETGIELVATNDVHYTYAKDEKAHDILLCIQTGKRLADENRMR 237 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM S+F +ALENT +IA RC ++ LP++ + D Sbjct: 238 YEGGQYYIKSEEEMKSLFPYALQALENTQKIADRCLVEIEFGVTKLPKY---DVPDGYTS 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E LR GLE R A+ A + R+RLD+EL I M + YFLIV DFI++ Sbjct: 295 WEY-LRKLCYEGLEKRYAE-------RADELRERLDYELGTIKNMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG+L A+ +RDVGR + MPY+ VD + K+IP +P Sbjct: 407 RQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDMPYAFVDSIAKMIPQEPKMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R+ D V L+E++++LEGL RH+S HAAG+VI + + + VP+ Sbjct: 467 IE-KALKVNPELRKMCEDDEEVKYLIEMAKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R + TQF M +E+ GL+K DFLGL+TLT++Q ++ ++ V++ + +DD Sbjct: 526 RAADGSV-TTQFTMTTLEQLGLLKMDFLGLRTLTVIQNAVLMARKKDPSVNMDTLDYDDK 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + T T GIFQLES+GM+ ++ ++P+ +ED+IA +SLYRPGP+D I Y KN Sbjct: 585 KVLEYIGTGKTDGIFQLESAGMKSFMKELKPNSLEDMIAGISLYRPGPMDFIPQYIKGKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I P ++P+L T G I+YQEQVMQI + L+GYSL +D+LRRAM KK EEM Sbjct: 645 DASSISYDCPQLEPILNSTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKGEEMK 704 Query: 727 KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 ++++ F I G KNGI + +A I++ + FA+Y FNKSHAAAYAV++YQTAW Sbjct: 705 RERQIFLYGDEASGIPGCVKNGIDEQVANKIYDEMLDFANYAFNKSHAAAYAVVAYQTAW 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVE++AA MT +DN K+ ++ +RQ IQI+PP +N DF V + I Y Sbjct: 765 LKYYYPVEYMAALMTSVIDNPSKVAEYIYASRQMGIQILPPDINNGEADFSVDEGNIRYG 824 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGY 896 L+AIK VG R ++E P+ +LEDF +RV SK+ LN+R +E+L+ AGALD G Sbjct: 825 LSAIKSVGRPVVRAMLEERRTFGPYKNLEDFITRVSSKEGLNKRTIENLIKAGALDTLGG 884 Query: 897 SRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVR 951 +R Q + Q +D++ + ++ + + + + EK F ++ + ++S EN + Sbjct: 885 TRKQFMSIYIQIMDHVNQEKKYSMSGQMSLFDLVGEEEKADFQIRMPDVGEYSKEN-KLA 943 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKG------YEESVATIR---GNNIRLAAMVV 1002 FE E VLG Y SGHPL+ ++ R+M I ++E + + G + M+V Sbjct: 944 FEKE--VLGVYISGHPLEEHEERWRRM-ISATTADFQFDEELNRTKVHDGEKSVVGGMIV 1000 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K T+ + ++T + E FP Sbjct: 1001 DKTVKYTKTNQVMAFLTLEDLLGTVEVVIFP 1031 >gi|325289860|ref|YP_004266041.1| DNA polymerase III catalytic subunit, DnaE type [Syntrophobotulus glycolicus DSM 8271] gi|324965261|gb|ADY56040.1| DNA polymerase III catalytic subunit, DnaE type [Syntrophobotulus glycolicus DSM 8271] Length = 1157 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1040 (37%), Positives = 596/1040 (57%), Gaps = 39/1040 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+GA +N ++ K PA+AITD ++ ++F + GI+PI Sbjct: 2 FTHLHVHTEYSLLDGAARINKLVKKAGELGMPALAITDHGVMYGVIDFYKACKKQGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + L N G+ +VLL EGY+ L+++VS ++ + R Sbjct: 62 IGCEVYV-APGKLTEKNAGRDD--KNYHLVLLAENMEGYRNLVKIVSNAHI-EGFYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 +L+E ++GLI L+ +G I ++ + A + L + +FG ++ +Q H Sbjct: 118 TDKKFLRE-NSKGLIALSACLAGEISELILEDNLEKARETALEYLDIFGKGNFFLEIQDH 176 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D+ + +++++++ +P+VATN+ ++ + D DVL+ + ++ + R Sbjct: 177 GLRDQQKVNTEMLKISRMTGIPIVATNDVHYVEKADSFLQDVLLCIQTGKTLNDQTRMSF 236 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK SEM +F + PE LE T EIA RC+ LP + E + Sbjct: 237 EGQEFYLKAHSEMNLLFGEHPEVLEITEEIAARCNVDFAFGTNFLPDYQVPEGFTL---- 292 Query: 308 ENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + R Q G KG RL++ELNVI + +SGYFLIVADF ++ Sbjct: 293 DQYLREQCAQIFPQRYPQAGEREKG--------RLEYELNVITKTGYSGYFLIVADFCRY 344 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++N + VGPGRGS A S+ AY L ITDI+PLR LLFERFLNP+R++MPD DIDF + Sbjct: 345 ARENGVTVGPGRGSAAASMVAYLLGITDIEPLRHDLLFERFLNPERITMPDIDIDFDPEG 404 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD+VI+YV KYG ++V QIITFG++ AK A+RDVGR L +P S+VD++ K +PN+ Sbjct: 405 RDKVIKYVTQKYGADKVCQIITFGTMGAKGAIRDVGRVLNIPLSKVDKVAKAVPNELGMT 464 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + R + + RLLEISQ LEG+ RHASTHAAG+VI PL+ +P+ Sbjct: 465 LERALTVSPDLIRMVS-EEEEIKRLLEISQGLEGMPRHASTHAAGVVIAREPLTNYLPLQ 523 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 R P+TQF MK +E GL+K DFLGL+ LT++ ++L + + +G +DL+ +P DD Sbjct: 524 RTAEG-FPMTQFPMKTVEDIGLLKMDFLGLRNLTIISQTLTRIQETQGKTIDLNKLPLDD 582 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY +L+ + G+FQLES GM+ L+ ++P C EDIIA+++LYRPGP++ I + RK Sbjct: 583 LKTYQMLSEGKSSGVFQLESGGMKAILKELKPSCFEDIIAVLALYRPGPMEQIPEFIKRK 642 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 K+ +HP ++ +L+ T G+I+YQEQVMQIA+ L GYSL AD+LRRAMGKK ++ M Sbjct: 643 QSG-KLSYLHPKLEKILQATYGIIVYQEQVMQIARDLGGYSLGRADLLRRAMGKKNRDIM 701 Query: 726 DKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 D++++ F+ GA + G+ K A IF+L+AKFA+YGFNK HA AYA+IS Sbjct: 702 DEERQNFVHGLQDDHGEVIVPGAIRLGLKKNEAEEIFDLMAKFAEYGFNKGHATAYALIS 761 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K ++P+EF A+ ++ + +K+ + +A+ I I+PP V DF + Sbjct: 762 YQTAYLKANFPLEFAASLLSSVIGVSDKVSFYIHEAQNNGITILPPDVQFSYNDFAIEGR 821 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L A++ VG I+E + PF SL DF SR+DS+ +N+RV+ESL+ AGA Sbjct: 822 AIRFGLGAVRNVGAQVVEKIIEERKNGPFRSLYDFISRMDSRMVNKRVMESLIKAGAFQS 881 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 SR Q L L+ + AQ +++R + ++F ++ D + V + + Sbjct: 882 L-CSRAQALTVLERMLDLAQNRQRDRESGQMSLFDLDEKLEEDFAMPQLDEVSQGDIS-K 939 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LG Y + HPL + + + + + + L ++ S +Q T++G Sbjct: 940 LEKEYLGLYLTNHPLSSIETQYKDLISSDIATCLEGLEEKKVILCGIITSYRQTITKRGE 999 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + + + E FP Sbjct: 1000 MMATFLLEDLSGTIEVLVFP 1019 >gi|224418173|ref|ZP_03656179.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT 98-5491] gi|253827500|ref|ZP_04870385.1| DNA polymerase III, alpha subunit [Helicobacter canadensis MIT 98-5491] gi|313141708|ref|ZP_07803901.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT 98-5491] gi|253510906|gb|EES89565.1| DNA polymerase III, alpha subunit [Helicobacter canadensis MIT 98-5491] gi|313130739|gb|EFR48356.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT 98-5491] Length = 1171 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1039 (37%), Positives = 605/1039 (58%), Gaps = 52/1039 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL +H+ YSLL+G + + +I ++AITD N+F A+EF + GI+P Sbjct: 14 SFTHLHLHTEYSLLDGLNKIKVLAKRIKELGMDSVAITDHGNMFGAIEFYKAMKEQGIKP 73 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G ++ + + +++++ F + L EGY+ L+ L S+ L + Sbjct: 74 ILG--MEAYLHNAEEISDKSNQRF----HLCLYAKNLEGYKNLMYLSSQACLYGYYMKP- 126 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPID------------RAFFFNSSQVAEKRLLTFKKL 177 RI L+E + GLI + +G + R + + +VA L ++ + Sbjct: 127 RISKKMLRE-HSAGLICSSACLNGEVQWHLNVKKDDNKGRKGYERAKEVA----LEYQDI 181 Query: 178 FGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG+ Y+ L RH G + + ++Q++Q++ + ++ATN++ + + D A +V + Sbjct: 182 FGEDFYLELMRH-GIEEQQLIDNQILQISLETGIKIIATNDTHYTKQSDSTAQEVAFCIG 240 Query: 236 HSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 + +R R T + Y+K+ EM +++D PEAL NT EIA +C+ L + P P Sbjct: 241 FGKDFNDPNRMRHTVQEFYIKSPEEMAQLYADFPEALANTQEIANKCNLELHLGDPTPPS 300 Query: 295 F------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 F + E D ++ E K GL+ RL I + H Q+Y +RL+ E+ +I Sbjct: 301 FKFTAEYAKAENLDFTQDSEY-FAYKCREGLKKRLLN--IPQEKH-QEYTERLEREIEII 356 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +MKF GY LIV DF++ AK+ IPVGPGRGS AGS+ A+ L IT+IDP+++ LLFERFL Sbjct: 357 NKMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKYDLLFERFL 416 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DFCQ RR+E++ YV KYG VAQ+ITFG ++AKA +RDV R + MP Sbjct: 417 NPERVSMPDIDMDFCQSRREEILEYVTEKYGRHNVAQVITFGMMKAKAVIRDVARVMGMP 476 Query: 469 YSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 Y + D KLIP D ++L+ A + + +E +P ++ + + LE R+ T Sbjct: 477 YGEADSFAKLIPKDL--DITLEKAYEKEPKIKELIEKNPLAKKIWDFAVILENTKRNPGT 534 Query: 528 HAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HAA +VI + L P+YR R + TQ++MK++E LIKFDFLGLKTLTL+ +L Sbjct: 535 HAAAVVIDSENELWHKAPLYRSSRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTLIDDAL 594 Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + R +++D + DD + Y L + TLGIFQ+ESS + + ++P EDIIA Sbjct: 595 KLIKNRHHLEIDFLKLDVDDKKVYETLQSGNTLGIFQIESSMFQGINKRLKPSTFEDIIA 654 Query: 646 LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 +++L RPGP+++ +V + +RK+GK IV + P ++P+LK T G I+YQEQVMQI Q + Sbjct: 655 IIALGRPGPMESGMVSDFIDRKHGKAPIVYMFPELEPILKPTYGTIVYQEQVMQIVQRIG 714 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 G+SL EAD++RRAMGKK + M K +F GA G K A ++EL+ KFA YGFNK Sbjct: 715 GFSLGEADLIRRAMGKKDAQIMADNKNKFAQGAQSQGFDKAKAEELWELIVKFAGYGFNK 774 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAYA+++++TA++KT+YP EF+AA +T E + EKI ++ ++A + +I+++PP++ Sbjct: 775 SHSAAYAMLTFETAYLKTYYPKEFMAALLTSEKNATEKIVEYIEEANKMDIKVLPPNLQK 834 Query: 824 PCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878 ++F V G++ I + L AIKG G I+E + F LEDF +R+D +K+N Sbjct: 835 SELEFSVAKIEGEDCILFGLGAIKGAGEVAINVILEERKNNGEFKDLEDFLARIDPQKVN 894 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 ++ LES + +GA+DCF Y+R LL+ ++ + + A+ + R ++F + S + Sbjct: 895 KKSLESFIKSGAMDCFNYTRKTLLEQVEILTESARVAQTARKEAENSLFGDSEEFTSVAL 954 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRL 997 LE + E E+ LGFY SGHPL+ YK I++ + Y + I N +I L Sbjct: 955 ELENKGEFDKKQILEFEKESLGFYASGHPLENYKEIIKSIDCV-YTNQIQDIAENSHILL 1013 Query: 998 AAMVVSKQQKKTRKGSRIG 1016 + K ++ G R G Sbjct: 1014 IGSIEDVITKFSKTGKRYG 1032 >gi|229032249|ref|ZP_04188222.1| DNA polymerase III subunit alpha [Bacillus cereus AH1271] gi|228729029|gb|EEL80032.1| DNA polymerase III subunit alpha [Bacillus cereus AH1271] Length = 1105 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/1032 (36%), Positives = 608/1032 (58%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPII Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPII 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEDEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESEAEELARMYQSMFGN-FYMSLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPAFMSRINVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E N Sbjct: 224 DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHINQLPKF------PVPANETN 277 Query: 310 E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR GL+ R G + + +RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 278 DMYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ ++ G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGTQIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 808 GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGISRTNLWKSL 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ LGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|329120922|ref|ZP_08249554.1| DNA-directed DNA polymerase III alpha subunit [Dialister micraerophilus DSM 19965] gi|327471381|gb|EGF16832.1| DNA-directed DNA polymerase III alpha subunit [Dialister micraerophilus DSM 19965] Length = 1138 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1038 (37%), Positives = 591/1038 (56%), Gaps = 40/1038 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YSL +G + ++ + Q AIAITD ++ A+ ++ GI+P Sbjct: 3 SFVHLHSHTEYSLFDGISRIKELVSYVKELGQQAIAITDHGAMYGAVYLYKECMKQGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + K N K + ++LL EGYQ LI++ S+ ++ + Sbjct: 63 IIGCELYVTADSRFKKGNAFK---EKLGHLILLAENNEGYQNLIKICSKAWV-EGYYVKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ ++G+I LT G I +A + A K + FG + ++ LQ Sbjct: 119 RVDHDLLRKY-SKGIIALTSCIGGEIPQAILNGDKEKARKLTEFYIDTFGRNNFFLELQN 177 Query: 189 HRGYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + Q + L A + L LVATN+ ++ +ED ++H++ + ++ + D P Sbjct: 178 HGMPEEAIVRQELSLIAKEYNLGLVATNDFHYVRKEDAKSHEIKLCISTGNTL---DNPN 234 Query: 248 ----VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + Y K+ EM S+ + P A+ENT IA RC+ L LP + + C Sbjct: 235 HFAFANNEFYCKSGEEMKSLLGEFPGAIENTKIIAERCNVKLTFGKHKLPSY-DVPC--- 290 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQ-RLDFELNVIARMKFSGYFLIVA 361 + A +L A+ K Y H D + RL++ELN+I +M FS YFLIV Sbjct: 291 ---------GETAATYLRKLCFDALPKRYPHFNDKEESRLNYELNIINQMGFSDYFLIVM 341 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++AK IP+GPGRGS AGS+ AY L IT+IDPLRF LLFERFLNP+R+SMPD D D Sbjct: 342 DFIRYAKNKGIPIGPGRGSAAGSIVAYLLDITEIDPLRFDLLFERFLNPERVSMPDIDTD 401 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 C RR E+I Y+++KYG E+VAQIITFG+L A+A +RDVGR + +P +VDR+ K+IP Sbjct: 402 LCYRRRGEIIEYLKSKYGEEQVAQIITFGTLAARAVIRDVGRVMSIPLKEVDRIAKMIPG 461 Query: 482 DPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P V+L++ + SR F + +V L++ KLEGL R + THAAG+VI +P+ Sbjct: 462 GPG--VTLKSTLESSRDFLNEYENNNTVRTLVDHCIKLEGLSRQSGTHAAGVVICSKPVY 519 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 + VP+ + + D TQ+ E+ GL+K D LGL+ LT++ +L + + RG+ V +S Sbjct: 520 EYVPI-QLTQDDFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDTLQMIKENRGITVKMS 578 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I D +T ++L T+G+FQ ES G L + P+ ED+I +V+LYRPGP+ + + Sbjct: 579 EIDDSDAKTCNMLCMGDTVGVFQSESDGFTNLLMQLHPERFEDLIPMVALYRPGPLGSGM 638 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 + NRK+GK K+ HP ++ +LKET GVI+YQEQVMQIA + G++L ++D+LRRAM Sbjct: 639 AEDFINRKHGKTKVDYPHPSLEKILKETYGVILYQEQVMQIASEMGGFTLGQSDLLRRAM 698 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 G K E + Q+E F+ GA GI K+I+ ++F+L+ FA YGFNKSH+ Y I+++TA Sbjct: 699 GHKEPEILQAQRELFVKGAEGKGIDKSISNHVFDLMVHFAGYGFNKSHSVCYGRIAWETA 758 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K ++ EF+A+ MT + ++ K+ ++ ++ R+ I+++ P +N F V I + Sbjct: 759 YLKANFRPEFMASMMTCYIGDINKVNRYIENTRKAGIKVLAPDINKSQAYFSVKGENIIF 818 Query: 838 SLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+ I+ VG HI+E+ K F L D R+DSK LN R ESL+ GALDCFGY Sbjct: 819 GLSGIQNVGENAVNHIIESRNKKGDFKDLIDLLERIDSKILNSRACESLIKCGALDCFGY 878 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QLL LD+ A +R +N+FA + +I + + E+ Sbjct: 879 DRSQLLAVLDDAINIAASGRFDRDAGQQNLFAESE--IIREIDYPDIEPMSKKEKLHWEK 936 Query: 957 RVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 ++LGFY SGHPLD Y ++ + K ++ + G + + +V ++ T+KG + Sbjct: 937 KLLGFYVSGHPLDEYSDMIESFVKSKVFDNNDIDYDGRIVTMCGIVTRVKKTITKKGLSM 996 Query: 1016 GWVTFSEPAKEYEANFFP 1033 G+ T + E+E FP Sbjct: 997 GYATLEDYDGEFECVIFP 1014 >gi|306821145|ref|ZP_07454761.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550838|gb|EFM38813.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1147 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/1062 (35%), Positives = 614/1062 (57%), Gaps = 57/1062 (5%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + + + F HL +H+ YSLL+G ++ ++ K + +IAITD +F ++F + Sbjct: 1 MVESITSEKKFTHLHLHTQYSLLDGFTVIDKVMKKASDLGMDSIAITDHGVMFGVVDFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A I+PIIGC+L + + N K I+LL EGY+ LI+LVS + Sbjct: 61 AAKKYNIKPIIGCELYTAARTHKDKENIDKKS----GHIILLAKDDEGYRNLIKLVS-IG 115 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 +D R+ L++ ++GL+ L+ +G + + + A K L+ ++++G Sbjct: 116 FVDGFYYKPRVDYELLKKY-SKGLVCLSACLAGDVQQQILAGDYEKACKTALSLEEIYGK 174 Query: 181 -RLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHS 237 Y+ +Q H ++ + + + +++ +PLV TN+ ++ ++D ++H+VL+ + Sbjct: 175 GNFYLEMQNHNIPEQKKVNIYLRKMSKDTGIPLVVTNDVHYVDKQDNKSHEVLLCIQTGK 234 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 T+ ++ +T + Y K++ EM +F EAL NT +IA C+ + LP + Sbjct: 235 TLADEQKMEFLTNEFYFKSQDEMYELFEGDEEALYNTQKIAEMCNLEFDFDSYHLPNYEV 294 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGY 356 E N +L + K D RQRLDFEL VI +M + Y Sbjct: 295 PE-------------NYTAYEYLKKLCNDGLKKYDKVTDEIRQRLDFELEVINQMGYVAY 341 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFI +AKKNNI VGPGRGS AGS+ +Y L ITDIDPL+F+LLFERFLNP R+SMP Sbjct: 342 FLIVHDFIDFAKKNNIAVGPGRGSAAGSIVSYLLNITDIDPLKFNLLFERFLNPQRVSMP 401 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D DIDF D+RD VI YV+ KYG + V+QIITFG+ +A+ A+RD R + + Y D++ Sbjct: 402 DIDIDFASDKRDMVIEYVKEKYGKDHVSQIITFGTFKARLAIRDCARVMGISYFIADKVA 461 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 K+IP + A+ + ++ D +V +L+++++ +EG+ RHASTHAAG+VI Sbjct: 462 KMIPLMLGVTIE-SALNINHELKKLYDEDDTVKKLIDMAKTIEGMPRHASTHAAGVVISK 520 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595 + VP+Y V+ D V QF M +E+ GL+K DFLGL TLT++Q+++D + + R + Sbjct: 521 NSVDSYVPLY--VQDDNIVAQFTMTTLEELGLLKMDFLGLGTLTIIQRTIDNIKKNRNIS 578 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 + L I +DD + Y + T TLG+FQ+ESSGMR+ ++ ++P+ +ED+ A +SLYRPGP+ Sbjct: 579 LKLDEIDYDDKKVYEHIATGKTLGMFQIESSGMRKFMKELKPENLEDLTAGISLYRPGPM 638 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D+I Y K ++ I IH + P+L T+G++IYQEQVMQI + L+GYS AD++RR Sbjct: 639 DSIGDYIKNKEDEKNIKYIHEKLIPILSVTKGIMIYQEQVMQIVRDLAGYSYGSADLVRR 698 Query: 716 AMGKKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AM KK + M++++++F I+G KNGI + A IF+ + FA+YGFNKSHAA Sbjct: 699 AMSKKKMDVMEQERQKFVYGMESENIAGCVKNGIDEKTANKIFDYMIDFANYGFNKSHAA 758 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY+VISYQTA++KT+YPVEF+A+ M++ + N +K+ ++ D ++ I+++ P VN D Sbjct: 759 AYSVISYQTAYLKTYYPVEFMASLMSMAIGNTDKVMEYKMDCQEMGIEVLAPDVNHSFSD 818 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F + D++I + L+A+KGVG A +I E + + S ED R+DS+ +N++V E+L+ Sbjct: 819 FSIEDDKIRFPLSALKGVGFAVASNIAEERGRNGRYISFEDLVERLDSRDINKKVAEALI 878 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL 940 +G+LD +R + + + I + +KN + F ++ G D + Sbjct: 879 KSGSLDSIIVNRASAMSNYERIIEGIHSTKKNMVQGQISFFNASISQGYKVGIAPD---I 935 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEE---SVATIR 991 ++FS E + E+ +LGFY SG+PL+ Y+ ++++ IK E S I Sbjct: 936 KEFSHE---ILLNMEKEILGFYISGNPLEKYQDLIKQRTNMTTTAIKEINEENTSQKVIE 992 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +++ M+ + T+K + + ++T + E FP Sbjct: 993 TTKVKIIGMISKMKISTTKKNAMMAFITIEDLYSSVEVIVFP 1034 >gi|315639407|ref|ZP_07894567.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter upsaliensis JV21] gi|315480512|gb|EFU71156.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter upsaliensis JV21] Length = 1197 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1002 (37%), Positives = 587/1002 (58%), Gaps = 55/1002 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YS+L+GA L + + ++A+TD N+F A++F Q + G++PI Sbjct: 4 FTHLHLHTEYSMLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMRSHGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D+L + F + L GY+ L+ L S+ Y+ G Sbjct: 64 IGLEAYLHNMDDLS-DKSSRQRF----HLCLYAKNEIGYKNLMYLSSQSYI--HGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +K++FGD Sbjct: 117 RINKKLLEKHSEGLICSSACLQGEVNWHLNIYNERNVRFGAKGYEAAKEAALWYKRVFGD 176 Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D R + +++L+ ++ ++ATN++ + +E EAH+V M + Sbjct: 177 DFYFEIMRHGINDQRAIDDDIIRLSKELDIKIIATNDTHYTFKERAEAHEVFMCIGMGKR 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K +M +F+D+PEA+ NT ++A +C+ L++ P P F Sbjct: 237 LNDPDRMRHSVKEFYVKTSEQMSELFADIPEAISNTQDLANKCNLELKLGDPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 KE D +E+ E + GLE RL + +G H +Y+ RL+ E Sbjct: 297 REYAKEFDITLPQEKVEFSFENDDLVFEHLCRKGLEERLK--FVDEGKH-DEYKARLETE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 + +I MKFSGY LIV DFI+ AK NIPVGPGRGS AGS+ AYAL ITDIDPL ++LLF Sbjct: 354 IKIIKEMKFSGYMLIVHDFIKVAKDKNIPVGPGRGSAAGSLVAYALKITDIDPLPYNLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFC+DRRDEVI YV +KYG ++VAQ+ TF L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCRDRRDEVIDYVIDKYGSDKVAQVSTFNKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L + VD KL+P + + +A + + +E P L E ++ LEGL R+ Sbjct: 474 LDISLQDVDEFIKLVPEELKITLD-EAYEKEPKIKEFIEKHPKGKELWEYAKALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L P++R ++D +TQ++ +E LIKFDFLGLKTLTL+ Sbjct: 533 AGMHAAGLVISNESLWNKTPLFRQSKNDERHLITQYSKDHLEDVDLIKFDFLGLKTLTLI 592 Query: 583 QKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 HNAIKLIKERYNKDIVWESIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPENFE 652 Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 D+IA+++LYRPGP+++ ++ + +RK+G +KI+ ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DLIAVLALYRPGPMESGMLDDFIDRKHGLKKIIYPFDVLKEVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K+ F +GA K G ++ A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMAKLKDEFANGAEKQGYNRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAY +I++QTA++KT+YP EF+AA +T E + +E + + ++ ++ NI+++PP Sbjct: 773 GFNKSHSAAYGLITFQTAYLKTYYPSEFMAALLTSEQNKIENVAMYIEEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873 +N +F G I Y L AIK VG +++E S + F L DF S++D Sbjct: 833 RINKAISEFSAIKQEDGTEAIVYGLGAIKSVGGPAIENVLELRSKNGDFKDLHDFLSKID 892 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + K+NRR LE + AG+ D FG++R L +LD + + A+ + + R N ++F E+ Sbjct: 893 TAKINRRTLEGFIKAGSFDDFGFTRKCLFNNLDTLAESARKMAEVRKNSASSLFGAEELN 952 Query: 934 FSDKITLEKFSVENSSV----RFENEQRVLGFYFSGHPLDVY 971 KI + V+NS + E+ +LG Y SGHPLD + Sbjct: 953 ADTKINI---VVDNSEFEAMEKLGYEKEILGIYISGHPLDKF 991 >gi|326570853|gb|EGE20877.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC7] Length = 1240 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1028 (38%), Positives = 579/1028 (56%), Gaps = 83/1028 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125 IIG ++ + + K S++L + GYQ L+ L+S Y + + G Sbjct: 62 IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 126 K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT S I + N+ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLGNNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228 Y+ ++R + D ++ ES ++Q A + H P TN+ D++AH Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + +A+ ++ RPR T Y K++ +M +F+DLP+A+ENT +A RC+ + + Sbjct: 232 EARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNITITL 291 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRL 341 +LP F + + I E + + GL RL Q + Y +RL Sbjct: 292 GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERL 347 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 D+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + Sbjct: 348 DYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYD 407 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 408 LLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDV 467 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEIS 515 R P+ DR+ K+IP P + L+ D + L +P + E++ Sbjct: 468 TRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWEMA 525 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +KLEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLG Sbjct: 526 KKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDFLG 584 Query: 576 LKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMR 629 L+ LT+LQ ++D + AQ +DL +P DD + Y +L T +FQLESSGM+ Sbjct: 585 LRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMK 644 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPML 682 + L ++P IED+IA+ +LYRPGP+++ +V + +RK+G +++ HP L+ P L Sbjct: 645 KYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPL 704 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 + T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 705 ESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNID 764 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 765 GGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQV 824 Query: 803 KKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK 860 D R F + I+PPSVN F V D + I Y L A+KGVG I+ A D Sbjct: 825 VFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDG 884 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLLQS 904 F L DFC+RVD KK+ +R LE+L+ AG DC R L + Sbjct: 885 AFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQ 944 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L A +N+ ++F + LE + R EQ LG Y + Sbjct: 945 LPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLYLT 1003 Query: 965 GHPLDVYK 972 GHPLD Y+ Sbjct: 1004 GHPLDEYR 1011 >gi|189485028|ref|YP_001955969.1| DNA polymerase III subunit alpha [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286987|dbj|BAG13508.1| DNA polymerase III subunit alpha [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 1174 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1050 (37%), Positives = 606/1050 (57%), Gaps = 73/1050 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSL-------NNILDKIAAD-QQPAIAITDTNNLFSALEFS 59 + FVHL H+ YSLL+GA L + + IA + + PA+AITD N++ A+EF Sbjct: 2 AAEFVHLHNHTEYSLLDGACRLIDDKGKPGELFNLIAKEYKMPALAITDHGNMYGAMEFY 61 Query: 60 QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVS 117 A +GI+PIIGC++ + + N + V + LL EGYQ L+ +VS Sbjct: 62 LAAKQSGIKPIIGCEIYVAPKSRFDKKNINRITEDNVNYHHLTLLAKDFEGYQNLMRIVS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + + R+ L++ GLI L+G +G + A + + A+ + ++ + Sbjct: 122 AGFT-EGFYYKPRVDKEVLKKYRC-GLIALSGCLAGEVASALVKGNKKKAQNAAIEYRDI 179 Query: 178 FG-DRLYVNLQRHRGYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 F D Y+ + D E+Q +++L+ + +PLVATN+ FL +ED E HD+ Sbjct: 180 FDKDNFYIEIM-----DNGLETQKKIIPSLIELSKSAAIPLVATNDCHFLKKEDAEVHDI 234 Query: 231 LMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 L+ + ++++ R D Y ++ +M+ FS +PEA++NT+EIA + + + Sbjct: 235 LLCIGTGKMLNETKRLHFDSDLFYYRSAEDMIKTFSSVPEAIKNTLEIAEKTNLEINTDK 294 Query: 290 PILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 +LP+F I KE K + L GL R ++ +RL EL+VI Sbjct: 295 LLLPQFPIPKE----YKSDSEYLETLCRRGLAARYDT-------IKPEHEERLKHELSVI 343 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F+ YFLIV+DFI++AK + IPVGPGRGSG+G++ AY L ITDI PL++ LLFERFL Sbjct: 344 NKMGFASYFLIVSDFIKYAKDHRIPVGPGRGSGSGAMVAYTLGITDICPLKYGLLFERFL 403 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NPDR SMPD DIDF RDEVI+YV+ KYG E+ AQIITFGS+Q++ ++DV R + Sbjct: 404 NPDRRSMPDLDIDFADYGRDEVIQYVRRKYGEEKCAQIITFGSMQSRLVIKDVARVMGFT 463 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 ++ + + KLIP + + +LQA D S+ + AD + +L+ SQKLEGL RH H Sbjct: 464 PAESNNIAKLIPQNASIAEALQASTDLSKLVK---ADEKIAKLIAASQKLEGLKRHTGVH 520 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VI ++ ++ P+ + + D+ TQ++ + + GL+K DFLGLKTLT++ + F Sbjct: 521 AAGMVIANKEITSYSPLAKGSK-DIVTTQYDGGVLPQLGLLKIDFLGLKTLTIIDDCVKF 579 Query: 589 LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + ++ +L IP DD +TY LL T+GIFQLES GMR ++ ++P I+DIIAL++ Sbjct: 580 IREKNPSFNLDNIPLDDKKTYELLGEAKTMGIFQLESIGMRDLIKKLKPSNIDDIIALIA 639 Query: 649 LYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+ + ++ N NRK+G+ KIV HPL + +LK+T GVI+YQEQVM+++ L+G++ Sbjct: 640 LYRPGPMGSGMLDNFVNRKHGRTKIVYDHPLQESILKDTYGVILYQEQVMKMSVALAGFT 699 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 EAD LR+AM KKI E ++KQ+E+F+ G + G++K I+ IF + F YGFNKSH+ Sbjct: 700 PGEADSLRKAMSKKIPEVIEKQREKFVRGTKEKGVNKKISEKIFNNIVAFGGYGFNKSHS 759 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEM------DNVE-KIKKFCQDARQFNIQIMPP 819 AAY +ISY+TA++K +YP+E++ A E+ +N E K+ + DA F+I+++PP Sbjct: 760 AAYGIISYKTAYLKANYPLEYITALCNNEIGRPATKNNEESKLVAYLGDALAFDIKVLPP 819 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI----MEASADKPFDSLEDFCSRVDSK 875 V FK D I + + A+K VG I +E K F DF R+D K Sbjct: 820 DVQYSDGKFKTEDKNIRFGMLAVKNVGKGVTDSIEQSRIENGQLKSFKDWVDFLQRIDLK 879 Query: 876 KLNRRVLESLVFAGALDCFGYS----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +N++ LESL+ AG D FG R +L+Q++D+ A V++ R + +F + K Sbjct: 880 SINKKALESLIKAGVFDSFGKDKFTIRGRLIQNIDSYADKAAKVKQYRESLQGFLFDNVK 939 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE----ESV 987 D ++L++ E+ VLGFY SGHPL RK I Y + + Sbjct: 940 TITDDILSLQEVKPLEPLEALNFEKEVLGFYISGHPL-----THRKKDIIAYSNYRLDKL 994 Query: 988 ATIRGN----NIRLAAMVVS--KQQKKTRK 1011 ++ N +R+A M+VS K TRK Sbjct: 995 PQLKENADRKTVRIAGMIVSVKKLTSTTRK 1024 >gi|295091058|emb|CBK77165.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium cf. saccharolyticum K10] Length = 1159 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1052 (37%), Positives = 597/1052 (56%), Gaps = 51/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+ + + ++ + ++AITD ++ ++F + A AGI+P Sbjct: 2 AFTHLHVHTEYSLLDASSKIKELVARAKELGMDSLAITDHGVMYGVIDFYRAAREAGIKP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 ++GC++ + + G+ + ++LL EGYQ L+++VS ++ + Sbjct: 62 VLGCEIYVAPGSRFDREIGAGEDKYY---HLILLAENNEGYQNLMKIVSTGFV-EGFYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 R+ L+ + GLI L+ +G + R + +K L ++ +FG+ ++ LQ Sbjct: 118 PRVDFETLERY-SRGLICLSACLAGEVQRNLARGMYEEGKKAALRYQSIFGEGNFFLELQ 176 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H + +++++ +PLVATN+ ++ ED ++HD+L+ + V+ ++R Sbjct: 177 DHGIPLQKTVNQGLLRMSQDTGIPLVATNDCHYIYREDEKSHDILLCIQTGKKVADENRM 236 Query: 247 RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R +YLK+ EM SIF EALENT +IA RC+ ++ +P+F + Sbjct: 237 RYEGGQYYLKSEEEMKSIFPYALEALENTHKIAERCNVEIEFGVTKIPQF-DVPGGKTSW 295 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADF 363 E NEL + G R Y D R+RLD+EL+VI M + YFLIV DF Sbjct: 296 EYLNELCEE---GFRTR---------YPDDDGTLRKRLDYELSVIQSMGYVDYFLIVWDF 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +A+ ++I VGPGRGS AGS+ +Y L ITDIDP+R++LLFERFLNP+R+SMPD DIDFC Sbjct: 344 IHFARSHDIMVGPGRGSAAGSIVSYCLRITDIDPIRYNLLFERFLNPERVSMPDIDIDFC 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG +RV QI+TFG+L AK +RDVGR L MPY++ D + K+IP D Sbjct: 404 FERRQEVIDYVVQKYGRDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDAVAKMIPGDL 463 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++L REA +DP + L+++S++LEGL RH S HAAG+VI + + V Sbjct: 464 G--MTLDKALKTPELREAYDSDPEIKYLIDMSRRLEGLPRHTSMHAAGVVISRNKVDEYV 521 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ R + TQF M +E+ GL+K DFLGL+TLT++Q ++ + +K+DL+ I Sbjct: 522 PLSRAADGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRQAEKTHHIKIDLNKID 580 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 ++D L T G+FQLESSGM+ ++ ++P+ +EDIIA +SLYRPGP+D I Y Sbjct: 581 YNDKAVLESLGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPKYL 640 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN + I P ++P+L T G I+YQEQVMQI + L+GY+L +D++RRAM KK Sbjct: 641 KGKNDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKA 700 Query: 723 EEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 M+K+++ F + G NGI + A I++ + FA Y FNKSHAAAYAV+SY Sbjct: 701 AVMEKERQNFVYGNPEEGVKGCIANGIDEKTANTIYDEMIDFAKYAFNKSHAAAYAVVSY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA MT DNV K+ ++ RQ ++IMPP +N F V + Sbjct: 761 QTAYLKYYYPVEFMAALMTSVKDNVSKVSEYILTCRQMGMKIMPPDINEGEGGFSVSNGA 820 Query: 835 IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L+A+K +G T I++ ++ PF SL DF R+ +K++N+R +ES + +GALD Sbjct: 821 IRYGLSALKSIGQTVVDEIVKERTERGPFVSLADFIDRMSNKEVNKRTIESFIKSGALDS 880 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENSS 949 +R Q + + +KN ++F EK F +IT Sbjct: 881 LPGTRKQKFLVSAALLEQKNKEKKNSMEGQMSLFDFVEEEEKEQF--QITFPDVGEYTKE 938 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIR-GNNIRLAAMV 1001 E+ +LG Y SGHPL+ Y + +K I EE A +R G+ + + M+ Sbjct: 939 ELLAFEKEMLGVYVSGHPLEEYMDLWKKNVTAVSSDFIVDEEEGHAKVRDGSYVTIGGMI 998 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K TR+ + ++T + A E FP Sbjct: 999 TEKTVKTTRQNKMMAFITVEDLAGTVEVLIFP 1030 >gi|313892071|ref|ZP_07825669.1| putative DNA polymerase III subunit alpha [Dialister microaerophilus UPII 345-E] gi|313119523|gb|EFR42717.1| putative DNA polymerase III subunit alpha [Dialister microaerophilus UPII 345-E] Length = 1138 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1038 (37%), Positives = 590/1038 (56%), Gaps = 40/1038 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YSL +G + ++ + Q AIAITD ++ A+ ++ GI+P Sbjct: 3 SFVHLHSHTEYSLFDGISRIKELVSYVKELGQQAIAITDHGAMYGAVYLYKECMKQGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + K N K + ++LL EGYQ LI++ S+ ++ + Sbjct: 63 IIGCELYVTADSRFKKGNAFK---EKLGHLILLAENNEGYQNLIKICSKAWV-EGYYVKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ ++G+I LT G I +A + A K + FG + ++ LQ Sbjct: 119 RVDHDLLRKY-SKGIIALTSCIGGEIPQAILNGDKEKARKLTEFYIDTFGRNNFFLELQN 177 Query: 189 HRGYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + Q + L A + L LVATN+ ++ +ED ++H++ + ++ + D P Sbjct: 178 HGMPEEAIVRQELSLIAKEYNLGLVATNDFHYVRKEDAKSHEIKLCISTGNTL---DNPN 234 Query: 248 ----VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + Y K+ EM S+ + P A+ENT IA RC+ L LP + + C Sbjct: 235 HFAFANNEFYCKSGEEMKSLLGEFPGAIENTKIIAERCNVKLTFGKHKLPSY-DVPC--- 290 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQ-RLDFELNVIARMKFSGYFLIVA 361 + A +L A+ K Y H D + RL++ELN+I +M FS YFLIV Sbjct: 291 ---------GETAATYLRKLCFDALPKRYPHFNDKEESRLNYELNIINQMGFSDYFLIVM 341 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++AK IP+GPGRGS AGS+ AY L IT+IDPLRF LLFERFLNP+R+SMPD D D Sbjct: 342 DFIRYAKNKGIPIGPGRGSAAGSIVAYLLDITEIDPLRFDLLFERFLNPERVSMPDIDTD 401 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 C RR E+I Y+++KYG E+VAQIITFG+L A+A +RDVGR + +P +VDR+ K+IP Sbjct: 402 LCYRRRGEIIEYLKSKYGEEQVAQIITFGTLAARAVIRDVGRVMSIPLKEVDRIAKMIPG 461 Query: 482 DPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P V+L++ + SR F + +V L+E KLEGL R + THAAG+VI +P+ Sbjct: 462 GPG--VTLKSTLESSRDFLNEYENNNTVRTLVEHCIKLEGLSRQSGTHAAGVVICSKPVY 519 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 + VP+ + + D TQ+ E+ GL+K D LGL+ LT++ +L + + RG+ V + Sbjct: 520 EYVPI-QLTQDDFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDTLQMIKENRGITVKMY 578 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I D +T ++L T+G+FQ ES G L + P+ ED+I +V+LYRPGP+ + + Sbjct: 579 EIDDSDAKTCNMLCMGDTVGVFQSESDGFTNLLMQLHPERFEDLIPMVALYRPGPLGSGM 638 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 + NRK+GK K+ HP ++ +LKET GVI+YQEQVMQIA + G++L ++D+LRRAM Sbjct: 639 AEDFINRKHGKTKVDYPHPSLEKILKETYGVILYQEQVMQIASEMGGFTLGQSDLLRRAM 698 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 G K E + Q+E F+ GA GI K+I+ ++F+L+ FA YGFNKSH+ Y I+++TA Sbjct: 699 GHKEPEILQAQRELFVKGAEGKGIDKSISNHVFDLMVHFAGYGFNKSHSVCYGRIAWETA 758 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K ++ EF+A+ MT + ++ K+ ++ ++ R+ I+++ P +N F V I + Sbjct: 759 YLKANFRPEFMASMMTCYIGDINKVNRYIENTRKAGIKVLAPDINKSQAYFSVKGENIIF 818 Query: 838 SLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+ I+ VG HI+E+ K F L D R+DSK LN R ESL+ GALDCFGY Sbjct: 819 GLSGIQNVGENAVNHIIESRNKKGDFKDLIDLLERIDSKILNSRACESLIKCGALDCFGY 878 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QLL LD+ A +R +N+FA + +I + + E+ Sbjct: 879 DRSQLLAVLDDAINIAASGRFDRDAGQQNLFAESE--IIREIDYPDIEPMSKKEKLHWEK 936 Query: 957 RVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 ++LGFY SGHPLD Y ++ + K ++ + G + + +V ++ T+KG + Sbjct: 937 KLLGFYVSGHPLDEYSDMIESFVKSKVFDNNDIDYDGRIVTMCGIVTRVKKTITKKGLSM 996 Query: 1016 GWVTFSEPAKEYEANFFP 1033 G+ T + E+E FP Sbjct: 997 GYATLEDYDGEFECVIFP 1014 >gi|153951559|ref|YP_001398338.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. doylei 269.97] gi|152939005|gb|ABS43746.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 1200 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1001 (38%), Positives = 587/1001 (58%), Gaps = 55/1001 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKKQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEDYNEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F D+PEA+ENT E+A++C+ L + P P F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFVDIPEAIENTQEVAQKCNLELNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + EE E N + GLE RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A ++++L+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWDLIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E + V+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENKVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIAPVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+NRR LE+L+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 AKINRRTLENLIKAGAFDEFGFTRKALFDNIENLTEASRKIAEVRKNAASSLFGEEELTS 951 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ E+F V + E+ +LG Y SGHPLD + Sbjct: 952 GVQVNFIPKNEEFEVME---KLGYEKEILGIYVSGHPLDRF 989 >gi|229163596|ref|ZP_04291545.1| DNA polymerase III subunit alpha [Bacillus cereus R309803] gi|228619846|gb|EEK76723.1| DNA polymerase III subunit alpha [Bacillus cereus R309803] Length = 1105 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/1030 (36%), Positives = 607/1030 (58%), Gaps = 57/1030 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPII Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPII 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ + AE+ T++ +FGD Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARTYQNMFGD-FYISLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPEFINKVNIPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 D +YLK+ EM ++FS EA+ NT +IA RC + H LP++ + E N Sbjct: 224 DQYYLKSSDEMGALFSQAEEAIYNTAKIAERCHVEIPFHVNQLPKY------PVPSSETN 277 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 + + V +R GA K H Q RL+ ELNVI+ M FS YFLIV DF+++A + Sbjct: 278 DTYLRRVCEEGMRKRYGA-PKEVHIQ----RLNHELNVISSMGFSDYFLIVWDFMKYAHE 332 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE Sbjct: 333 NHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDE 392 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 +IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ ++L Sbjct: 393 MIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--ITL 450 Query: 490 QAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ + + ++ Sbjct: 451 KDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSIAI-QE 509 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ ++ G ++D+ +P D + Sbjct: 510 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKQIDIRKLPLQDEK 569 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 570 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 629 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 630 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 689 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G KNG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 690 ERKHFVQGCLKNGYEETSANKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 749 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 750 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 809 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 810 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKG 869 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGFYF 963 +YA A + G D + K+ V+ + F E+ LGFY Sbjct: 870 ALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEALGFYL 912 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 S +P Y + +++ I +++ + R + S + +T+K ++ ++TF + Sbjct: 913 SSYPTAQYVKLGKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFCDQ 971 Query: 1024 AKEYEANFFP 1033 E EA FP Sbjct: 972 NDEMEAVLFP 981 >gi|326559241|gb|EGE09672.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 46P47B1] Length = 1240 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1030 (38%), Positives = 581/1030 (56%), Gaps = 87/1030 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125 IIG ++ + + K S++L + GYQ L+ L+S Y + + G Sbjct: 62 IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 126 K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT S I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228 Y+ ++R + D ++ ES ++Q A + H P TN+ D++AH Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + +A+S ++ RPR T Y K++ +M +F+DLP+A+ENT +A RC+ + + Sbjct: 232 EARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITL 291 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVA--GLEVRLA------QGAIAKGYHAQDYRQ 339 +LP F I K E E K V+ GL RL Q + Y + Sbjct: 292 GINVLPDF------PIPKGETIETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDE 345 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RLD+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL Sbjct: 346 RLDYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLS 405 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 + LLFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +R Sbjct: 406 YDLLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVR 465 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLE 513 DV R P+ DR+ K+IP P + L+ D + L +P + E Sbjct: 466 DVTRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWE 523 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 +++KLEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDF Sbjct: 524 MAKKLEGLTRNVGKHAGGVLIAPNHISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDF 582 Query: 574 LGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSG 627 LGL+ LT+LQ ++D + AQ +DL +P DD + Y +L T +FQLESSG Sbjct: 583 LGLRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSG 642 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDP 680 M++ L ++P IED+IA+ +LYRPGP+++ +V + +RK+G +++ HP L+ P Sbjct: 643 MKKYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQP 702 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 L+ T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + Sbjct: 703 PLESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQN 762 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ + Sbjct: 763 IDGGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTD 822 Query: 801 KIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASA 858 ++ D R F + I+PPSVN F V D + I Y L A+KGVG I+ A Sbjct: 823 QVVFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARK 882 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLL 902 D F L DFC+RVD KK+ +R LE+L+ AG DC R L Sbjct: 883 DGAFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLW 942 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 + L A +N+ ++F + LE + R EQ LG Y Sbjct: 943 RQLPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLY 1001 Query: 963 FSGHPLDVYK 972 +GHPLD Y+ Sbjct: 1002 LTGHPLDEYR 1011 >gi|195953981|ref|YP_002122271.1| DNA polymerase III, alpha subunit [Hydrogenobaculum sp. Y04AAS1] gi|195933593|gb|ACG58293.1| DNA polymerase III, alpha subunit [Hydrogenobaculum sp. Y04AAS1] Length = 1201 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1088 (38%), Positives = 607/1088 (55%), Gaps = 84/1088 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA+ + ++ K A+AITD NLF + F ++ A GI+PI Sbjct: 4 FVHLHLHTQYSLLDGAIKIKDLAKKAKEYGYKAVAITDHGNLFGTMSFYKEMKANGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVSRMYLLDQG 125 IG ++ + ++GK + I+LL G + L++L S + ++ Sbjct: 64 IG--MEAYFTTGKRTEHKGKGSEDNITDRINHHIILLAKNDTGLKNLMKL-SSIAFIEGF 120 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 RI L++ EGLI LT G + ++A + FK +FGD LY+ Sbjct: 121 YYKPRIDYEVLEQ-HAEGLIALTACLKGVPTFYAAQGNEEMAYNWVKKFKDIFGDDLYLE 179 Query: 186 LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-- 242 LQ H ++ +A + + ATN+ +L EED AH+VLMA+ + + Sbjct: 180 LQSNHIPAQETANKTLIDIAKRYNVKFAATNDCHYLLEEDLRAHNVLMAIQMKKTLQELG 239 Query: 243 KDRPRVTPDHYLKNRSEMVSIF----SDLPEALENTVEIARRCS---FILQVHAPILPRF 295 +D + + EMV F S+ +AL NTVEI+ + + I + + P F Sbjct: 240 EDAFGHYDGMHFASYEEMVKKFEGKWSEWEKALLNTVEISEKVADSLSIFEDKSYKFPEF 299 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + DDI + LRN AV GL+ R+ + I+K ++Y RL++EL VI M F Sbjct: 300 FK--GDDINVNISSYLRNLAVEGLKSRIQKSQISKNIPEKEYWDRLNYELEVIQNMGFDS 357 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV+DFI W+K NNIPVGPGRGS AGS+ A+AL ITD+DPL+ L+FERFLNP+R+SM Sbjct: 358 YFLIVSDFINWSKSNNIPVGPGRGSAAGSLVAFALNITDVDPLKHGLIFERFLNPERISM 417 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DFC D RD+VI YV+ KYG + VAQIIT+ +++AK LRDV RA+ M Y D L Sbjct: 418 PDIDVDFCMDNRDKVIEYVKEKYGKDSVAQIITYNTMKAKQTLRDVARAMGMAYKDADVL 477 Query: 476 CKLIP--NDPAHPVSLQA------------------IADD-SRFREARLADPSVDRLLEI 514 KLIP N +SL+ I D+ +FR+ DP + L+EI Sbjct: 478 AKLIPQGNVQGTWLSLEEMYITPIEELMERYGHRGDIEDNVKKFRDLAKKDPQIKELVEI 537 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD--VRSDLP--VTQFNMKWIEKAGLIK 570 S KLEGL RH S HAAGIVI +PL +L P+Y D V+ D TQ++M +E+ GL+K Sbjct: 538 SIKLEGLTRHTSLHAAGIVIAPKPLIELAPLYLDKSVKDDTGNIATQYDMAHLEELGLVK 597 Query: 571 FDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 DFLGLKTLT L K + + Q +GV +D + F++ E Y L T T+G+FQLES GMR Sbjct: 598 MDFLGLKTLTELWKMKELVKQNKGVDIDFLSLDFNNKEIYEFLATGETIGVFQLESKGMR 657 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687 + ++ ++PD EDI+A ++LYRPGPI + +V + NRK GKEK+V ++ +LKET G Sbjct: 658 ELIKRLKPDRFEDIVAALALYRPGPIKSGMVDKFINRKLGKEKVVYEFEELEEVLKETYG 717 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQ+M I+ +L+G+++ EAD LR+A+GKK + M K K+ FI + + G K Sbjct: 718 LIVYQEQIMFISNILAGFTMGEADNLRKAIGKKKADLMAKIKDDFIRRSCERGYPKDKIE 777 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++ + +FA Y FNKSH+ AY IS+ TA++K +YP EF A + E + +K + Sbjct: 778 KLWSEIEEFASYSFNKSHSVAYGYISFWTAYVKLYYPDEFYAVKFSTENSD-KKFINLLK 836 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHI--MEASADKPFDS 864 DA+ F I+++PP VN VDFK+ R I + L IKGVG TARHI M+ + F S Sbjct: 837 DAKSFGIKVLPPDVNKSDVDFKIEVPRHIRFGLGRIKGVGEDTARHIKSMQEKIGRDFLS 896 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCF----GY-SRMQLLQSLDNIQKYAQWVEKNR 919 +DF D++K+N++VLE+L AGA D GY +R L L N Q + ++ Sbjct: 897 FQDFTKNTDNRKVNKKVLEALSKAGAFDSLIEKSGYKNREDFLSRLLNSQDISSIAQR-- 954 Query: 920 TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL-RKM 978 ++F G + K T E+ +S + E+ VLGFY SGHPLD Y IL Sbjct: 955 -----SLF----GIKASKST-EQMEQSSSIDILKLEKEVLGFYISGHPLDKYSWILSHNK 1004 Query: 979 GIKGYEE---------SVATIRGNNIR----LAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 I E+ ++ + G N + ++ Q KKT+ GS + + Sbjct: 1005 DITNIEDIDFDNMPNQAIDSEAGQNASAEYTIVGVISDLQIKKTKNGSYMAIFNLVDKTD 1064 Query: 1026 EYEANFFP 1033 E FP Sbjct: 1065 IVEVVVFP 1072 >gi|242310657|ref|ZP_04809812.1| DNA polymerase III alpha subunit [Helicobacter pullorum MIT 98-5489] gi|239523055|gb|EEQ62921.1| DNA polymerase III alpha subunit [Helicobacter pullorum MIT 98-5489] Length = 1172 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/1038 (36%), Positives = 609/1038 (58%), Gaps = 52/1038 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+G + + +I ++AITD N+F A+EF + GI+PI Sbjct: 16 FTHLHLHTEYSLLDGLNKIKILAKRIKELGMDSVAITDHGNMFGAIEFYKAMKEQGIKPI 75 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ + + +++++ F + L +GY+ L+ L S+ L + R Sbjct: 76 LG--MEAYLHNAEEISDKSNQRF----HLCLYAKNLQGYKNLMYLSSQACLYGYYMKP-R 128 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPID------------RAFFFNSSQVAEKRLLTFKKLF 178 I L+E +EGLI + +G + R + + +VA L +K++F Sbjct: 129 ISKKMLRE-HSEGLICSSACLNGEVQWHLNLKKEDNKGRKGYERAKEVA----LEYKEIF 183 Query: 179 GDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 GD Y+ L RH G + + + Q++Q++ + ++ATN++ + ++ D A +V + Sbjct: 184 GDDFYLELMRH-GIEEQQLIDKQIIQISLETGIKIIATNDTHYTNQGDSTAQEVAFCIGF 242 Query: 237 STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + +R R T + Y+K+ +M ++ DLPEA+ NT EIA +C+ L + P P F Sbjct: 243 GKDFNDPNRMRHTVQEFYIKSPEQMAKLYMDLPEAIANTKEIADKCNLELHLGDPTPPSF 302 Query: 296 ------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + E D ++ E K GL+ RL + H Q+Y++RL+ E+ +I Sbjct: 303 KFTAEYAKAENLDFTQDSEY-FAYKCREGLKKRLEN--VESSRH-QEYKERLEKEIEIIN 358 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +MKF GY LIV DF++ AK+ IPVGPGRGS AGS+ A+ L IT+IDP+++ LLFERFLN Sbjct: 359 KMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKYDLLFERFLN 418 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD D+DFCQ RR+E++ YV +KYG VAQ+ITFG ++AKA +RDV R + MPY Sbjct: 419 PERVSMPDIDMDFCQSRREEILEYVTDKYGRHNVAQVITFGMMKAKAVIRDVARVMGMPY 478 Query: 470 SQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 + D KLIP + ++L+ A + + +E DP ++ + + LE R+ TH Sbjct: 479 GEADAFAKLIPKEL--DITLEKAFEKEPKIKELIDKDPLAKKIWDFAVVLENTKRNPGTH 536 Query: 529 AAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 AA +VI + L P+YR R + TQ++MK++E LIKFDFLGLKTLTL+ +L Sbjct: 537 AAAVVIDSEHELWHKAPLYRSTRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTLVDDALK 596 Query: 588 FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + R +++D + +D + Y L + TLGIFQ+ESS + + ++P EDIIA+ Sbjct: 597 LIKNRHNLEIDFLKLDVNDKKVYETLQSGNTLGIFQIESSMFQGINKRLRPSTFEDIIAI 656 Query: 647 VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++L RPGP+++ +V + +RK+GK IV + P ++ +L+ T G I+YQEQVMQI Q + G Sbjct: 657 IALGRPGPMESGMVSDFIDRKHGKAPIVYMFPELESILRPTYGTIVYQEQVMQIVQKIGG 716 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 +SL EAD++RRAMGKK + M K +F GA K G ++ A ++EL+ KFA YGFNKS Sbjct: 717 FSLGEADLIRRAMGKKDAQIMADNKNKFAQGAEKQGFNRAKAEELWELIVKFAGYGFNKS 776 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA+I+++TA++KT+YP EF+AA +T E ++ +KI ++ ++A + +I+++PP++ Sbjct: 777 HSAAYAMITFETAYLKTYYPKEFMAALLTSEKNSTDKIVEYIEEANKMDIKVLPPNIQKS 836 Query: 825 CVDFKVG----DNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879 ++F V ++ I + L AIKG G I+E + F LEDF SR+D +K+N+ Sbjct: 837 ELEFSVARIDDEDCILFGLGAIKGAGEVAINIILEERKNNGDFKDLEDFLSRIDPQKVNK 896 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 + LE+ + +GA+DCFGY+R LL+ ++ + + A+ + + ++F + + + Sbjct: 897 KSLEAFIKSGAMDCFGYTRRTLLEQVELLTENAKTAQIAKKEAENSLFGDSEEFTAIALE 956 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLA 998 LE + E E+ LGFY SGHPL+ YK I++ + Y + I N +I L Sbjct: 957 LENKEEYSKKEILEFEKESLGFYASGHPLEDYKEIIKSINC-AYTNQIQDIAENSSILLV 1015 Query: 999 AMVVSKQQKKTRKGSRIG 1016 + K ++ G R G Sbjct: 1016 GSIEDVITKFSKSGKRYG 1033 >gi|326570115|gb|EGE20160.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC8] Length = 1240 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1028 (38%), Positives = 579/1028 (56%), Gaps = 83/1028 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125 IIG ++ + + K S++L + GYQ L+ L+S Y + + G Sbjct: 62 IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 126 K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT S I + N+ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLGNNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228 Y+ ++R + D ++ ES ++Q A + H P TN+ D++AH Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + +A+ ++ RPR T Y K++ +M +F+DLP+A++NT +A RC+ + + Sbjct: 232 EARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNITITL 291 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRL 341 +LP F + + I E + + GL RL Q + Y +RL Sbjct: 292 GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERL 347 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 D+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + Sbjct: 348 DYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYD 407 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 408 LLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDV 467 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEIS 515 R P+ DR+ K+IP P + L+ D + L +P + E++ Sbjct: 468 TRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWEMA 525 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +KLEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLG Sbjct: 526 KKLEGLTRNVGKHAGGVLIAPNSISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDFLG 584 Query: 576 LKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMR 629 L+ LT+LQ ++D + AQ +DL +P DD + Y +L T +FQLESSGM+ Sbjct: 585 LRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMK 644 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPML 682 + L ++P IED+IA+ +LYRPGP+++ +V + +RK+G +++ HP L+ P L Sbjct: 645 KYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPL 704 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 + T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 705 ESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNID 764 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 765 GGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQV 824 Query: 803 KKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK 860 D R F + I+PPSVN F V D + I Y L A+KGVG I+ A D Sbjct: 825 VFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDG 884 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLLQS 904 F L DFC+RVD KK+ +R LE+L+ AG DC R L + Sbjct: 885 AFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQ 944 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L A +N+ ++F + LE + R EQ LG Y + Sbjct: 945 LPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLYLT 1003 Query: 965 GHPLDVYK 972 GHPLD Y+ Sbjct: 1004 GHPLDEYR 1011 >gi|229198755|ref|ZP_04325451.1| DNA polymerase III subunit alpha [Bacillus cereus m1293] gi|228584688|gb|EEK42810.1| DNA polymerase III subunit alpha [Bacillus cereus m1293] Length = 1105 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/1032 (36%), Positives = 607/1032 (58%), Gaps = 61/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PII Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPII 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQNMFGS-FYMSLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPAFMNRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E N Sbjct: 224 DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNETN 277 Query: 310 E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR GL+ R G + + +RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 278 DMYLRRVCEEGLQKRY-------GTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK +I +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRQIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 808 GMATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSL 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ VLGF Sbjct: 868 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 911 YLSSYPTAQYVKLAKELEIPTLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 969 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 970 DQNDEMEAVLFP 981 >gi|296113397|ref|YP_003627335.1| DNA polymerase III alpha subunit [Moraxella catarrhalis RH4] gi|295921091|gb|ADG61442.1| DNA polymerase III alpha subunit [Moraxella catarrhalis RH4] Length = 1240 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1028 (38%), Positives = 579/1028 (56%), Gaps = 83/1028 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125 IIG ++ + + K S++L + GYQ L+ L+S Y + + G Sbjct: 62 IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 126 K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT S I + N+ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLGNNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228 Y+ ++R + D ++ ES ++Q A + H P TN+ D++AH Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + +A+ ++ RPR T Y K++ +M +F+DLP+A++NT +A RC+ + + Sbjct: 232 EARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNITITL 291 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRL 341 +LP F + + I E + + GL RL Q + Y +RL Sbjct: 292 GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERL 347 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 D+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + Sbjct: 348 DYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYD 407 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 408 LLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDV 467 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEIS 515 R P+ DR+ K+IP P + L+ D + L +P + E++ Sbjct: 468 TRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWEMA 525 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +KLEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLG Sbjct: 526 KKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDFLG 584 Query: 576 LKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMR 629 L+ LT+LQ ++D + AQ +DL +P DD + Y +L T +FQLESSGM+ Sbjct: 585 LRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDTDVYTSVLQEAKTSAVFQLESSGMK 644 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPML 682 + L ++P IEDIIA+ +LYRPGP+++ +V + +RK+G +++ HP L+ P L Sbjct: 645 KYLAQLKPSNIEDIIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPL 704 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 + T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 705 ESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNID 764 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 765 GGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQV 824 Query: 803 KKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK 860 D R F + I+PPSVN F V D + I Y L A+KGVG I+ A D Sbjct: 825 VFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDG 884 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLLQS 904 F L DFC+RVD KK+ +R LE+L+ AG DC R L + Sbjct: 885 AFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQ 944 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L A +N+ ++F + LE + R EQ LG Y + Sbjct: 945 LPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLYLT 1003 Query: 965 GHPLDVYK 972 GHPLD Y+ Sbjct: 1004 GHPLDEYR 1011 >gi|171463884|ref|YP_001797997.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193422|gb|ACB44383.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 1205 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1018 (38%), Positives = 580/1018 (56%), Gaps = 77/1018 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + +++ + D A+AITD +NLF + F A ++GI+ Sbjct: 4 PRFVHLRVHSEFSITDGVVRIDDAVAAAVKDGMGALAITDLSNLFGLVRFYTAARSSGIK 63 Query: 69 PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGK 126 PI G + I + QD P P ++LLV GY L EL+SR L +Q + Sbjct: 64 PITGADVWISNPQD------------PDQPHRLLLLVQNHSGYLNLCELLSRASLDNQSR 111 Query: 127 QSVRICLSWLQEIGTE------------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 + +W E + GLI L+G G + A + A+ + Sbjct: 112 GRAEVDSAWFSEPAAKTEDKAAKRTLPYGLIALSGARMGEVGAALLAGQADQAKIVARRY 171 Query: 175 KKLFGDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +KLF Y+ +QR R Q+ LA +LP+VAT+ F+ D+ AH+ + Sbjct: 172 EKLFPKSFYIEVQRGGNPQDERHLQLACHLASELDLPVVATHPVQFMQRSDFTAHEARVC 231 Query: 234 VAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 +A ++ R + + Y + EM F+DLP AL N+VEIA+RC+ L + P L Sbjct: 232 IAEGELLGNPRRTKKFNEEQYFLTQEEMEKRFADLPVALANSVEIAKRCNLSLVLGQPRL 291 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIA 349 P F + + L ++ GLE + + A++ Y +RL FE+ I+ Sbjct: 292 PDFPTPPGITL----DEYLLAQSEVGLERHMERNFPDPEERAKEMARYHERLVFEVKTIS 347 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLN Sbjct: 348 QMGFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLN 407 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFCQ RD VI+YV++KYG + V+QI TFG++ A+AA+RDVGR L+ Y Sbjct: 408 PERVSMPDFDIDFCQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGY 467 Query: 470 SQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 + VD + KL+PN P ++++ A + + E + V +LL ++Q+LEG+ R+ H Sbjct: 468 NFVDGIAKLVPNKPGQYMTIEMAKKKEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMH 527 Query: 529 AAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A G++I L+ P+Y +D S ++QF+ +E GL+KFDFLGL TLT+L Sbjct: 528 AGGVLIAPGRLTDFCPLYTQESKDQDSSSVISQFDKDDVEAVGLVKFDFLGLTTLTILAA 587 Query: 585 SLDFLAQRGVKV--------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 A+R +K ++ IP DD + + +L T+ +FQLES GM+ L + Sbjct: 588 -----AERWIKALHADRRDWNIGEIPLDDEKAFDVLKRANTVAVFQLESRGMQGMLREAK 642 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 PD EDIIALV+LYRPGP+D I + RK+G++K+ P I+P+L+ET G+++YQEQVM Sbjct: 643 PDRFEDIIALVALYRPGPMDLIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQVM 702 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 Q+AQ++ GYSL AD+LRRAMGKK EEM + ++ F GA GIS+ A I++L+ +F Sbjct: 703 QMAQMIGGYSLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEGKANEIYDLMERF 762 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A YGFNKSHAAAYA+++YQTAW+K +YP EF+AA+++L MD+ +K+K D NI++ Sbjct: 763 AGYGFNKSHAAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNNIRV 822 Query: 817 MPPSVNTPCVDF---KVGD-------NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSL 865 P +NT +F + D + + Y L A++G G I++A PF L Sbjct: 823 FSPDINTGVYEFTPLRAPDAAPDSPISHVRYGLGAVRGTGEAAIESIVKARETGGPFKDL 882 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-----------RMQLLQSLDNIQKYAQW 914 DFC+RVD +++NRR +E+L+ AGA D R LL SL + A+ Sbjct: 883 FDFCARVDRRQVNRRAIEALMRAGAFDDLYRDSVPAGGNLYDIRSTLLASLARAIEAAEQ 942 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 E + A E+ ++ E E R + E+ LG +GH D Y+ Sbjct: 943 AEASIYQVSLFEVAGEENRHLPELVREPVWSEKK--RLQEEKTALGLCLTGHMFDAYR 998 >gi|299143802|ref|ZP_07036882.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518287|gb|EFI42026.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1149 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1057 (36%), Positives = 610/1057 (57%), Gaps = 67/1057 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ ++ + +K AIA+TD N++ + F + AGI+PI Sbjct: 4 FVHLHVHSEYSLLDGSARISELANKAKELNMKAIALTDHGNMYGTIAFYKACKNAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ I N ++ ++ + F ++LL G++ L+++VS ++ + R Sbjct: 64 IGCEVYI-ADGNYRVFDKNMSRF----HLILLAENYTGFKNLMKIVSEGFV-NGYYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 I L L++ EG+I + +G + R + AE+ L ++K+FG ++ LQ H Sbjct: 118 IDLDVLRKY-HEGIIATSACLAGEVQRKLNYGDFTGAEEAALKYEKIFGKGNFFLELQDH 176 Query: 190 -----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + ++Y E+ +L ++PL+ATN+ +L+ ED +AHDVL+ V T V++++ Sbjct: 177 DIKEQKKVNKYLETLSAKL----DIPLIATNDVHYLNREDAKAHDVLLCVQTGTTVNEEN 232 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R + T + YLK+ EM FS +AL NTV+IA RC+ ++ H LP F ++ Sbjct: 233 RMKFQTEEFYLKSIDEMYERFSGNEDALLNTVKIADRCNVNIEFHNLHLPHF------EV 286 Query: 304 QKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 NE LR GL+ R ++ R+++E + I M + YFLIV Sbjct: 287 PAGFTNESYLRFLVDRGLKERYE-------IINEEISNRVEYEFHTIIDMGYVDYFLIVW 339 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A+ N I VGPGRGS AGS+ +YAL I DIDPL+F+LLFERFLNP+R+SMPD DID Sbjct: 340 DFIRYARDNGIVVGPGRGSAAGSIISYALRIIDIDPLKFNLLFERFLNPERVSMPDIDID 399 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR+EVI YV KYG E VAQI+TFG++ A+ A+RDVGRAL M Y +VD + K +P Sbjct: 400 FCYERREEVIEYVIEKYGIENVAQIVTFGTMGARGAIRDVGRALDMSYGRVDYIAKQVPE 459 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + + S +E D RL++++ K+EGL RH STHAAG+VI ++ Sbjct: 460 ELNMTIKDALVVSPSLNKEYN-EDEDAKRLIDMALKVEGLPRHTSTHAAGVVISKDAITN 518 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600 VP+ R+ + + TQFNM +E+ GL+K DFLGL+TLT+++ +L+ + + G+++D S Sbjct: 519 YVPLTRNDK--IIATQFNMNELEELGLLKMDFLGLRTLTVIRDALNLIKKNYGIEIDFSS 576 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 + +D ++ TLGIFQ ESSGMR L+ ++PD ED++A +L+RPGP++ I Sbjct: 577 MELNDSNVLNMFAKAETLGIFQFESSGMRAFLKDLKPDAFEDLVAANALFRPGPMNQIPK 636 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K+ KI +H ++ +LK T G I+YQEQVMQI Q + GYSL AD++RRAM KK Sbjct: 637 FIESKHNLNKISYVHEKLEDILKSTYGCIVYQEQVMQIVQKIGGYSLGRADLVRRAMSKK 696 Query: 721 IKEEMDKQKERFI-----------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 M+++++ FI GA +NG+ + A I++L+ FA Y FNKSH+ AY Sbjct: 697 KMAVMEEERQNFIYGKIENGKKICCGAIENGVDEASANKIYDLMIDFAKYAFNKSHSVAY 756 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 +V++Y+TA++K +YP EF+AA ++ M V ++ + ++ ++ I+++PP VN F Sbjct: 757 SVVAYRTAYLKYYYPTEFMAAQISSYMGKVTQVTLYIEECKRLGIEVLPPDVNESFKHFT 816 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLV 886 V N I + L AIK + I A F S DF RV +S+ +N+R +E L+ Sbjct: 817 VEGNNIRFGLKAIKNMNENFISTIEIARKAGKFSSFNDFVKRVCEINSQAINKRAMEYLI 876 Query: 887 FAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 +GALD G +R Q L +++DN+ KN ++F + ++ DK L K Sbjct: 877 KSGALDSLGGNRAQYLAIYEKTIDNVIGNL----KNNVKGQFSLF--DTNSYEDKEVLPK 930 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG----YEESVATIRGNN--IR 996 +++ + + E+ +LG Y SGHPLD Y ++ M + +E S +R + ++ Sbjct: 931 LRDFSTNEKLDFEKEILGIYVSGHPLDAYIETIKNMNVTNTSIIFENSKNAMRKTDSYVK 990 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ +K+ T+ + + + + + E FP Sbjct: 991 IVGLLKNKKTMITKNKKIMAFASLEDLYGQIELVIFP 1027 >gi|300088655|ref|YP_003759177.1| DNA polymerase III subunit alpha [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528388|gb|ADJ26856.1| DNA polymerase III, alpha subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1211 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/1045 (38%), Positives = 603/1045 (57%), Gaps = 46/1045 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ +SLL+G + ++ + A+AITD ++ AL+F ++ A I+PI Sbjct: 2 FTHLHVHTEFSLLDGMCRIPALVHRAKELGMTALAITDHGTMYGALKFYRECLAQDIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + L T GK +VLL GY+ L++LVS + + R Sbjct: 62 IGCEVYVAPGSRLDKTPAGKNHR----HLVLLARNNTGYRNLLQLVS-LANTEGFYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + EGLI L+ SG + R N A + ++ F Y +QRH Sbjct: 117 VDREILAKY-REGLIALSACPSGEVPRLILENRLSEARETAEWYRDNFDGDFYFEIQRHP 175 Query: 191 --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +DR + ++ L+ ++PLVAT ++ ++ ED + HD+L+ + +V R ++ Sbjct: 176 MPEFDRINNA-LIDLSRELDIPLVATGDTHYVRREDAQTHDLLLCIGTGAMVKDTSRMKM 234 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ +EM ++ D+PEALENT IA +C L+ LP+ I++ E Sbjct: 235 QADSFYLKSEAEMAELYRDIPEALENTNRIADKCDLKLEFGRVHLPQ-IDRPAGLTSDEY 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++L ++A+ RL A ++ R+RL +EL VI + +F+ YFL+V D I++ Sbjct: 294 LSQLCHEALP----RLYPDA------SEAVRERLTYELEVIEKTQFADYFLVVWDIIRFV 343 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+ I G RGS A S+ L IT++DPL ++L+FERFLN +R MPD D+DF DRR Sbjct: 344 KERGIYFGV-RGSAAASIVLRCLDITEVDPLEYNLVFERFLNIERKEMPDIDMDFQDDRR 402 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV KYG + VAQIITFG+L A+AA+RD GRAL + VDR+ +LIP P + Sbjct: 403 DEVIEYVSEKYGLDHVAQIITFGTLGARAAIRDTGRALGIDLPVVDRVARLIPFGPNMTL 462 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ +++ REA D +V ++++ ++++ GL RHASTHAAG+VI PL+ P+ R Sbjct: 463 D-KALEENTELREAVAKDGTVQKIIDAARQVSGLSRHASTHAAGVVISKEPLALHAPLQR 521 Query: 548 -------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 D RSDL +TQ+ M+ I GL+K DFLGL L++L ++ + + QR G +D+ Sbjct: 522 LNRESASDARSDLVMTQYPMEDIGLIGLLKMDFLGLANLSILSRAQEIIGQRHGRPLDVH 581 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL+ T+G+FQLE +GMR+ ++ ++P DI A+V+LYRPGP++ I Sbjct: 582 RIPLDDPKTFALLSAGETMGVFQLEGAGMRRYIKELKPTHFTDIAAMVALYRPGPMEQIP 641 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K+G+E I HP ++ +L+ET GVI+YQEQV+ IA+ SG+SL +AD+LR+AMGK Sbjct: 642 RFIRSKHGEEAITYPHPALEEILQETYGVIVYQEQVLFIARTFSGFSLGQADILRKAMGK 701 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K E M KQK+ FI+GA KNG S+ +AV +F L+ FA Y FNK+HA +YA+I+YQTA++ Sbjct: 702 KNPEVMQKQKQNFIAGALKNGYSEDLAVEVFGLIEPFAGYAFNKAHAVSYALIAYQTAYL 761 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----- 834 K +YPVE++AA + + D EK+ + R+ I ++PP +N V+F V D+ Sbjct: 762 KANYPVEYMAAFLATQRDVAEKVAAAAVECRRLGISLLPPDINNSDVNFSVEDSSPAGPA 821 Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + LAA+K VG ++ E + PF S+EDFC RVD LNRRVLESL+ AGALDC Sbjct: 822 IRFGLAAVKNVGEAAVTGLVAERRSGGPFTSVEDFCRRVDGACLNRRVLESLIKAGALDC 881 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVENSSVRF 952 G R LLQ+ + +A+ + R + +F G + + L+ +E+ S F Sbjct: 882 LG-DRATLLQNAGRLLDFAERERRIRDSGQGTLFDLFGGVAEAPPVALD---LESGSATF 937 Query: 953 EN----EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E+ +LG Y S HP + + E + G LA MVV+ + + Sbjct: 938 NDILAWEKDLLGLYVSAHPFSRFVGKVDHDTTALCGEITEEMEGQTTTLAGMVVAVRLAQ 997 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 TR G+ V + E +P Sbjct: 998 TRDGNTFANVELEDLNGRVEVIAWP 1022 >gi|331002659|ref|ZP_08326174.1| hypothetical protein HMPREF0491_01036 [Lachnospiraceae oral taxon 107 str. F0167] gi|330407072|gb|EGG86576.1| hypothetical protein HMPREF0491_01036 [Lachnospiraceae oral taxon 107 str. F0167] Length = 1152 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1055 (37%), Positives = 602/1055 (57%), Gaps = 55/1055 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + I+ + ++AITD ++ ++F ++A A GI+P Sbjct: 2 SFTHLHVHTGYSLLDGSCKIKEIIRRAKELNMTSLAITDHGVMYGVIDFYKEAKANGIKP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+GC++ + K QG + ++LL +GY+ L ++VS+ + + Sbjct: 62 ILGCEVYVSPASRFEKQAKQGDRYY----HLILLAKNNKGYENLTKIVSKGFT-EGFYYK 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L++ EG+I L+ +G I + A K +K LFG D Y+ LQ Sbjct: 117 PRIDFELLEKY-HEGIIALSACLAGEIPKLISRGRDDEARKVAKKYKDLFGEDSFYLELQ 175 Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ +QV V++ ++PLVATN+ +++ ED AHD+L+ + S VS DR Sbjct: 176 NHGIPEQKFVNQVLVKIGKEFDIPLVATNDIHYINAEDAMAHDILLCIQTSKTVSDSDRM 235 Query: 247 RVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + LK+ EM ++F PEA+ENT +IA C ++ LP + D++ Sbjct: 236 RYEGGQFFLKSEDEMKALFPYAPEAIENTAKIADMCEVEIKFGETKLPEY--PVPDNMSA 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHA-----QDYRQRLDFELNVIARMKFSGYFLIV 360 +E E L Q + Y A +D + R+ +EL VI +M + YFLIV Sbjct: 294 KEYLE-----------SLCQSGFERNYSADYPNREDIKSRMYYELGVIEKMGYIDYFLIV 342 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D+I +A+ I VGPGRGS AGSV +Y L ITDIDP++++L+FERFLNP+R+SMPD D+ Sbjct: 343 WDYINYARGKGISVGPGRGSAAGSVVSYCLGITDIDPIKYNLIFERFLNPERVSMPDIDV 402 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF +RR EVI YV NKYG ERV QIITFG+LQA+ +RDVGRA+++PY++ D + K+IP Sbjct: 403 DFADERRSEVIDYVVNKYGSERVCQIITFGTLQARGVIRDVGRAMEIPYARCDSIAKMIP 462 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 D + L A+ + +E +D V L++ S KLEGL RHAS HAAG+VI + + Sbjct: 463 RDKDITLEL-ALERNKELKELYDSDEVVHELIDYSLKLEGLPRHASIHAAGVVISKKAVD 521 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 + VP+ V D TQF M +E+ GL+K DFLGL+TLT+LQ +L + + + +DL+ Sbjct: 522 EYVPLALGV-DDAITTQFTMTTLEELGLLKMDFLGLRTLTVLQNTLAMVKKNYNIDLDLN 580 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I +DD + Y ++T T +FQLES+GM+ ++ ++P+ +EDIIA +SLYRPGP+D I Sbjct: 581 NIDYDDKKVYEFISTGKTDAVFQLESAGMQSFMKRLKPENLEDIIAGISLYRPGPMDFIP 640 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y KN K+K+ P + +L+ T G I+YQEQVMQI + L+GY++ +D +RRAM K Sbjct: 641 KYIAGKNSKDKVSYDSPQLVSILEPTYGCIVYQEQVMQIVRDLAGYTMGGSDEVRRAMSK 700 Query: 720 KIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 K M+ +++ F I G NGI + +A IF+ + FA Y FNKSHAA YAV Sbjct: 701 KKAHIMEMERKNFIYGNEEKGIKGCINNGIEEQVANRIFDEMIDFASYAFNKSHAACYAV 760 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTA++K +YP EF+AAS+T DN K+ ++ I+I+PP VN F V Sbjct: 761 ISYQTAYLKYYYPKEFMAASLTSVSDNPAKLAEYIGSLMDMGIKILPPDVNLGEGAFSVD 820 Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + I + L+ IKGVG A ++ E + + + +LE+F +R+ K LN+R +ES + AGA Sbjct: 821 KDGIRFGLSTIKGVGKAVADSLVRERTMNGKYLTLENFINRLPQKDLNKRSIESFIKAGA 880 Query: 891 LDCFGYSRMQLLQS----LDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSV 945 LD +R + + + +D K ++ + + + + E+ +F SD I +E++ Sbjct: 881 LDGMEGNRHEKILNAELFIDKKSKESKASIPGQISFFDVVSEEERDSFVSDMIHIEEYPK 940 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM----GIKGYEESVATI---RGNNIRLA 998 E + E VLG Y SGHPL+ Y +L K I Y + I G + + Sbjct: 941 EE---LLKYEMEVLGMYVSGHPLEEYISLLEKHCDARSIDFYPDESGNILLESGRKLAVG 997 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++V ++ T+KG + T + E FP Sbjct: 998 GLLVEVNKRFTKKGDMMAICTLEDLYGRIELVIFP 1032 >gi|163942337|ref|YP_001647221.1| DNA polymerase III DnaE [Bacillus weihenstephanensis KBAB4] gi|163864534|gb|ABY45593.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4] Length = 1110 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/1033 (36%), Positives = 606/1033 (58%), Gaps = 59/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + + + +P +VLL GYQ L+++ S ++ + K+ Sbjct: 63 IGLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG-- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ T++ +F + Y++LQ H Sbjct: 108 IPKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFSN-FYISLQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ EM ++FS EA++NT+ IA RC + H LP+F + E Sbjct: 226 TDQYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKF------PVPSNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 N+ LR GL+ R G + + RLD ELNVI+RM FS YFLIV DF+++ Sbjct: 280 NDTYLRRVCEEGLQKRY-------GTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + + +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 451 ITLRDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ ++ G ++D+ +P Sbjct: 511 -QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK +I +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGKRQIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++++ F+ G +NG +T + I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y Sbjct: 690 LDQERKHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYT 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ Sbjct: 750 LEFMTALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E +K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S Sbjct: 810 IGMATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLG 960 L +YA D + K+ V+ + F E+ LG Sbjct: 870 LKGALEYANLARDF--------------DLGDAVPKSKY-VQGEELSFIEQLNKEKEALG 914 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 915 FYLSSYPTAQYAELGKELEIPSLAQAMRHKKKVQ-RAIVYITSVKVIRTKKLQKMAFITF 973 Query: 1021 SEPAKEYEANFFP 1033 + E EA FP Sbjct: 974 CDQNDEMEAVIFP 986 >gi|320537716|ref|ZP_08037642.1| putative DNA polymerase III DnaE [Treponema phagedenis F0421] gi|320145453|gb|EFW37143.1| putative DNA polymerase III DnaE [Treponema phagedenis F0421] Length = 1139 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1055 (36%), Positives = 586/1055 (55%), Gaps = 63/1055 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA S+ ++ QPA+A+TD N+F L F ++ I+P+ Sbjct: 3 FVHLHVHSDYSLLDGASSIQKLVSTAKKLGQPALALTDHGNMFGVLRFQEECKKQEIKPL 62 Query: 71 IGCQLDIDMQDNLKMTNQ--GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC+L + + Q G+ + ++L+ GY+ L+ L S+ Y +G Sbjct: 63 IGCELYVAAKSRFDRNKQINGRNYY----HLILIAKNEIGYRNLMVLSSKAYT--EGMYY 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 L + +EGLI L+ +G + + AE + + +FGD ++ +Q Sbjct: 117 KPRIDDELLQAHSEGLICLSACLAGQLPYLLLNGRKEEAEAHVRKYLDIFGDNYFIEVQN 176 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + + + +++A +P+V TN+ + ++D A D+L+ + V + +R + Sbjct: 177 HGLAEQKKVTPLLIEMARKLGIPMVLTNDVHYAEQKDSVAQDILLCIGMKKVRTDTNRMK 236 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQK 305 D YLK+ EM +F + PE + NT+ IA C+ + P+LP + I +E Sbjct: 237 FETDQFYLKSAEEMAKLFPEYPEMMSNTLRIADMCNVEIPQPGPLLPVYKIPEEF----A 292 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 ++ +R+ GL+ R + ++R ++EL++I +M F GYFLIV DFI Sbjct: 293 SKDLYIRHLVAEGLKTRYE-------VITDEIKKRAEYELDIIIKMDFVGYFLIVWDFIN 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK ++IPVGPGRGSGAGS+ AYA+ ITDIDPLR+ LLFERFLNP+R+SMPDFD+DFC + Sbjct: 346 WAKNHDIPVGPGRGSGAGSIVAYAMRITDIDPLRYKLLFERFLNPERISMPDFDVDFCFE 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV+ KYG E V QIITFG+L+ KAA++DVGR L +P + V+ + KL+P DP Sbjct: 406 RRQEVIEYVRQKYGDESVGQIITFGTLKPKAAIKDVGRVLNIPLADVNMITKLMPEDPKL 465 Query: 486 PVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 I + + +E P L +I++ LE R+ S HAAGIVIG L+ VP Sbjct: 466 TFEKALTIPELVQIKET----PEYTELFQIAEALEDSNRNTSLHAAGIVIGKTKLTDYVP 521 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---VKVDLSLI 601 +Y+D ++ TQF M IE+ GL+K DFLGLKTLTL++ + D + +RG + I Sbjct: 522 LYKDSKTGKIATQFTMDLIEQCGLVKMDFLGLKTLTLIKHTEDLIRRRGGALANFSIQNI 581 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 DD TY +L + +FQ ES GM+ L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 582 CDDDERTYKMLGEGMSAAVFQFESKGMQGILKRAKPDKIEDLIALNALYRPGPMAFIDQF 641 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K KI P + +L+ET GVI+YQEQVMQ+AQ + G SL EAD+LRRAMGKK Sbjct: 642 IESKFDNSKIKYPDPCLQDILEETYGVIVYQEQVMQVAQKIGGLSLGEADILRRAMGKKK 701 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 KE M + K +F A G K A IF++L FA YGFNKSHAAAY+V++YQTA++K Sbjct: 702 KEVMAEWKVKFAERAVTQGFDKKHAEEIFDILVPFAGYGFNKSHAAAYSVLAYQTAYLKA 761 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 ++P EF+AA++T E+ +V+K+ + ++A + + I+PPS+N F V I + Sbjct: 762 NFPAEFMAANLTNEITSVDKLPVYIEEAEKMGLTIVPPSINKSEPYFSVDKGEIIFGFLG 821 Query: 842 IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IKGVG A I E + + S DF RVD + + +E L+ G D F +R Sbjct: 822 IKGVGEQAAIDIYNERKTNGMYKSFIDFLDRVDLHTVKKSTVEVLIKTGCFDEFDINRAT 881 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFENEQRVL 959 L+ + YA ++ + + ++F + FSD + + E+ ++ Sbjct: 882 LIGQYEAAMGYATQKKEGQESGQVSLFENTGIKEFSD-FVFARVEDLPQKEKLRMEKDLV 940 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR---------LAAMVVSKQQKKTR 1010 GFY SGHPLD Y+ I+ E+ AT+ ++ + M+ + + T+ Sbjct: 941 GFYISGHPLDEYRKII---------ETTATLDLGHLERATPEKKYLIVGMLNAIKPYTTK 991 Query: 1011 KGSRIGW------------VTFSEPAKEYEANFFP 1033 KG + + V FS+ +E A F P Sbjct: 992 KGQSMAFGSFEDLHGVIDLVFFSKIWEEQRARFLP 1026 >gi|326576416|gb|EGE26325.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis O35E] Length = 1240 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1030 (38%), Positives = 581/1030 (56%), Gaps = 87/1030 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125 IIG ++ + + K S++L + GYQ L+ L+S Y + + G Sbjct: 62 IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 126 K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT S I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228 Y+ ++R + D ++ ES ++Q A + H P TN+ D++AH Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + +A+S ++ RPR T Y K++ +M +F+DLP+A++NT +A RC+ + + Sbjct: 232 EARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITL 291 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVA--GLEVRLA------QGAIAKGYHAQDYRQ 339 +LP F I K E E K V+ GL RL Q + Y + Sbjct: 292 GINVLPDF------PIPKGETIETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDE 345 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RLD+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL Sbjct: 346 RLDYELDIILKMGFPGYFLIVTDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLS 405 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 + LLFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +R Sbjct: 406 YDLLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVR 465 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLE 513 DV R P+ DR+ K+IP P + L+ D + L +P + E Sbjct: 466 DVTRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWE 523 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 +++KLEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDF Sbjct: 524 MAKKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDF 582 Query: 574 LGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSG 627 LGL+ LT+LQ ++D + AQ +DL +P DD + Y +L T +FQLESSG Sbjct: 583 LGLRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSG 642 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDP 680 M++ L ++P IED+IA+ +LYRPGP+++ +V + +RK+G +++ HP L+ P Sbjct: 643 MKKYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQP 702 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 L+ T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + Sbjct: 703 PLESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVEGAIEQN 762 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ + Sbjct: 763 IDGGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTD 822 Query: 801 KIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASA 858 ++ D R F + I+PPSVN F V D + I Y L A+KGVG I+ A Sbjct: 823 QVVFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARK 882 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLL 902 D F L DFC+RVD KK+ +R LE+L+ AG DC R L Sbjct: 883 DGAFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLW 942 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 + L A +N+ ++F + LE + R EQ LG Y Sbjct: 943 RQLPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLY 1001 Query: 963 FSGHPLDVYK 972 +GHPLD Y+ Sbjct: 1002 LTGHPLDEYR 1011 >gi|282891879|ref|ZP_06300358.1| hypothetical protein pah_c200o024 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498139|gb|EFB40479.1| hypothetical protein pah_c200o024 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 1241 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1083 (36%), Positives = 610/1083 (56%), Gaps = 90/1083 (8%) Query: 23 LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82 ++ + S+N I +K A + PA+A+TD N++ A+EF + A ++PI+GC++ + + Sbjct: 1 MDASASINLIAEKAAEFKMPAVALTDHGNMYGAVEFFKACQGAQVKPILGCEVYVAPESR 60 Query: 83 LKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 L G ++ F + LL + EGY+ L +L S + L+ RI L++ Sbjct: 61 LDRKKIGNRSDF----HLTLLAKSMEGYKNLCKL-SSIGFLEGFYYHPRIDHEVLEKY-K 114 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH------------ 189 EGLI L+G S + + + K L +K LFG+ Y+ +QRH Sbjct: 115 EGLICLSGCLSSRLSSEILQGTPESIRKHLAWYKDLFGEDYYLEVQRHTMSEENIQRDGL 174 Query: 190 -------RGYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-- 234 + Y Y E Q +V+L+ +PLVATN+S ++ ED+ H++L+ V Sbjct: 175 YQETWLLQNYQEYIEKQTKVTQALVELSQEFGIPLVATNDSHYIEREDWREHEILLNVQS 234 Query: 235 AHSTVVSQKD------------RPRVTPDH--YLKNRSEMVSIFSDLPEALENTVEIARR 280 + +KD + RV H Y K+ ++M +F DLP+AL +T+EIA + Sbjct: 235 GEPCEILEKDAMGNPKFRQLNPKRRVYSSHECYFKSPTQMQEVFKDLPQALASTLEIAEK 294 Query: 281 CSFILQV---HAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-- 334 C L H P+ +P F+E + KEE R +AV L + I K Y A Sbjct: 295 CHVQLDFKTKHYPVYVPPFLEGQS--YTKEE----RAQAVEKYLWDLCEEGIKKRYDADK 348 Query: 335 --------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380 Q R+RL++E+ +I + S Y LIV DFI WAK+N IPVGPGRGS Sbjct: 349 LAKIQELFPDKDPTQIVRERLEYEMGIIVPKEMSDYLLIVWDFINWAKRNQIPVGPGRGS 408 Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440 GAGS+ Y + +TDI+PLRF L FERF+NP+R+S PD D+D C DRR +VI+Y KYG Sbjct: 409 GAGSIVLYLIGVTDIEPLRFHLFFERFINPERLSYPDIDVDICMDRRGDVIQYTLEKYGK 468 Query: 441 ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFR 499 + VAQIITFG+++A+ A++DVGR L +P S+V+ + KL+P D ++L+ A+ D R Sbjct: 469 DNVAQIITFGTMKARMAIKDVGRVLSVPLSKVNEIAKLVPEDLN--ITLEKALEKDPDLR 526 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 D R+++I +KLEG R HAAGI+I PLS ++P+ SD+P TQ++ Sbjct: 527 AMYETDEDAKRIIDIGKKLEGSIRSTGIHAAGIIISGAPLSSIIPICNAKDSDMPATQYS 586 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTL 618 MK +E G++K DFLGLKTLT +Q+ + + G +D +P DD T+ LL TL Sbjct: 587 MKPVEMVGMLKVDFLGLKTLTAIQQCVASVNVSTGKLIDWVNLPLDDVRTFDLLNQGKTL 646 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 G+FQLES+GM+ + D E+IIA+ +LYRPGP+D I + NRK+G+E I + HP + Sbjct: 647 GVFQLESAGMQDLARQLHLDKFEEIIAVGALYRPGPMDMIPSFINRKHGREPIENDHPWM 706 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 +L ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK +M +Q+E+F GA + Sbjct: 707 KDILAETYGIMVYQEQVMQIASKLARYSLGEGDVLRRAMGKKDMAQMAQQREKFRLGALE 766 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 N I +T ++ +F+ + KFA YGFNKSHAAAY +SY TA++K ++P E++A+ MT + D+ Sbjct: 767 NEIEETTSMLVFDKMEKFAAYGFNKSHAAAYGYLSYVTAYLKANHPREWMASLMTCDSDD 826 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EAS 857 + K+ KF ++A+ I I+PP +N F I +++ IKGVG I+ E + Sbjct: 827 LSKVAKFIREAQTMGIAILPPDINEAGSTFIATPQGIRFAMKGIKGVGEGVVEAIVQERN 886 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 PF F R+D KK+ ++ +E+LV AG+ D G+SR L QS+D + + A ++ Sbjct: 887 RSGPFTHFYQFFKRIDLKKVGKKSIENLVDAGSFDFTGWSRDALRQSIDPMYETALKEKR 946 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPIL 975 + F T K + + +S + E+ +LGF+ +GHPLD ++ + Sbjct: 947 EEQSGVLTFFDLMGATSEAKFSFAPNVLNPTSKQNILLKEKELLGFFLTGHPLDSFQEYM 1006 Query: 976 RKMGIKGYEESVATIRGNN--IRLAAMVVSKQQK---KTRKGSRIGWVTFSEPAKEYEAN 1030 +++ + S + GN+ R A ++ S Q + KT+K + + S+ + YE Sbjct: 1007 QRLSCVNF--SAIDMLGNDAVFRSAVIIESVQLRLSAKTQK--KFAILRISDGIESYELP 1062 Query: 1031 FFP 1033 +P Sbjct: 1063 IWP 1065 >gi|33865566|ref|NP_897125.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 8102] gi|33632735|emb|CAE07547.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8102] Length = 1172 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1058 (36%), Positives = 604/1058 (57%), Gaps = 51/1058 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PAIA+TD ++ A+E + + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPAMVERAKELGMPAIALTDHGVMYGAIELLKLCKGSDLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P +V+L A GY+ L++L S +L Sbjct: 62 IIGNEMYV-------INGSIDDPQPKKEKRYHLVVLAKNAVGYRNLVKLTSISHLRGMRG 114 Query: 127 QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + R C+ L + +EGLI+ T G + +A VA ++++FG+ Y Sbjct: 115 RGIFSRACIDKHLLKTYSEGLIISTACLGGELPQAILRGRPDVARNVARWYQEVFGEDFY 174 Query: 184 VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR ++V++A + LVATN++ +LS++D EAHD L+ V ++S Sbjct: 175 LEIQDHGSPEDRIVNVELVRIAQELGIQLVATNDAHYLSKQDVEAHDALLCVLTGKLISD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R T Y+K EM +F D + +A+ NTV +A + + +PRF Sbjct: 235 EKRLRYTGTEYIKTEEEMNRLFVDHLEPDVVRQAIANTVAVAEKVEDYDILGHYQMPRFP 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E LR GL RL + A ++Y +R+ EL ++ +M F Y Sbjct: 295 IPE----GHTAVTYLREVTEQGLRERLELSSDAS--IPENYAERMAHELKIMEQMGFPTY 348 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+V D+I++A++ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMP Sbjct: 349 FLVVWDYIRFAREQKIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMP 408 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL Sbjct: 409 DIDTDFCIERRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLA 468 Query: 477 KLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 KLIP P L+A I ++S FRE +DP V R ++++ ++EG + HAAG+ Sbjct: 469 KLIPVVRGKPAKLKAMIGEESPTPEFREKYESDPVVKRWVDMAMRIEGTNKTFGVHAAGV 528 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQ 591 VI PL +LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + Sbjct: 529 VIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVS 587 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G ++D +P +D +T+ LL GIFQLESSGMRQ + ++P +EDI ++++LYR Sbjct: 588 SGTRLDPDKLPPEDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYR 647 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+D ++ + NRK+G+E I H +++P+L ET G+++YQEQ+M+IAQ L+GYSL + Sbjct: 648 PGPLDAGLIPKFINRKHGREAIDFAHTILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQ 707 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EM K + F+ GA++ G+ + ++ +F+ + FA+Y FNKSH+ AY Sbjct: 708 ADLLRRAMGKKKVAEMQKHRGIFVKGAAERGVDEAVSDELFDQMVLFAEYCFNKSHSTAY 767 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 ++YQTA++K HYPV ++AA +T+ +K++++ + I++MPP VN DF Sbjct: 768 GAVTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYIANCNAMGIEVMPPDVNASRTDFT 827 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +RI + L+A++ +G R ++ + +D PF SL D C R+ S LNRR LESL+ Sbjct: 828 PNGDRILFGLSAVRNLGDGAIRQLIRSRDSDGPFRSLPDLCDRIPSSVLNRRGLESLIHC 887 Query: 889 GALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITL 940 GALD +R QL+ LD + +A K+R + N+F E G + Sbjct: 888 GALDSMDPAANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPNDEDGASDLSLAP 947 Query: 941 EKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKP---ILRKMGIKGYEESVATIRGNNI 995 + V + + + + E+ +LGFY S HPL P +L +G+ EE + + Sbjct: 948 KAAPVADYGPAEKLKLEKELLGFYLSDHPLKQLTPSARLLAPIGLGALEEQPDKAK---V 1004 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ +Q TRKG + + + + EA FP Sbjct: 1005 SAVTMITELRQVTTRKGDGMAILQLEDLSGSCEAVVFP 1042 >gi|291166424|gb|EFE28470.1| DNA polymerase III, alpha subunit [Filifactor alocis ATCC 35896] Length = 1151 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/1054 (35%), Positives = 613/1054 (58%), Gaps = 56/1054 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+G ++ + + K D A+AITD +F +EF + A GI+PI Sbjct: 5 FTHLHLHTPYSLLDGFATIEDTIKKAKEDGMDAVAITDHGVMFGVVEFYKVALNYGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + N K + ++LL GYQ LI+LVS + ++ R Sbjct: 65 IGCEVYVSYRTRFDKENIDKRSY----HLILLAENNTGYQNLIKLVS-LGFVEGYYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + + L+ +EG+I L+ +G + ++ N+ + A+K ++++FG D ++ LQ H Sbjct: 120 VDIDLLKSY-SEGIIALSACLAGEVQQSLLNNNYEEAKKVACRYREIFGEDNFFLELQNH 178 Query: 190 RGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + + +++ L+ +PLVATN+ +++ D + HD+L+ + + KDR Sbjct: 179 GIEEQLKVNHLLRRLSLDTGIPLVATNDVHYVNRSDSKNHDILLCIQTGKTLDDKDRMEF 238 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D Y K R EM +FS +AL NT +I++RC+ + LP F + +++ Sbjct: 239 KTDQFYFKTREEMYQLFSKDEDALLNTWKISQRCNVSFDFNVIHLPEF-QVPHHYTKEQI 297 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 +EL + GL+ R R+R ++E VI +M + YFLIV DFI+++ Sbjct: 298 FDELCER---GLQERYFDIT-------PPIRERFEYEKKVIKKMGYVEYFLIVQDFIRFS 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 KKNNI VGPGRGS AGS+ +Y L ITD+DP+++ LLFERFLNP+R+SMPD DIDFC ++R Sbjct: 348 KKNNIMVGPGRGSAAGSIISYCLQITDVDPIKYHLLFERFLNPERISMPDIDIDFCYEKR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 ++VI YV+ KYG + VAQIITFG+ AKAA+RDVGR L + Y++VD++ K IP++ + Sbjct: 408 EQVIDYVKEKYGEDHVAQIITFGTFGAKAAIRDVGRVLGISYAEVDKIAKQIPDNLGMTI 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ +S ++ ++D +V +++ ++++EGL RHASTHAAG+VI + VP+Y Sbjct: 468 E-KALEMNSELKKMYVSDNNVRNIIDFAKRIEGLPRHASTHAAGVVISKNTMDYYVPLY- 525 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + DL TQF M +E+ GL+K DFLGL+TLT++QK+L+ + + K+D S + ++ Sbjct: 526 -MHKDLIATQFPMTTLEELGLLKMDFLGLRTLTVIQKTLEAIEKIYNKKIDFSKMDTNNT 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + LL+ TLG+FQLES GMR L+ ++PD EDI+A +SLYRPGP+++I +Y KN Sbjct: 585 RVFQLLSNGNTLGVFQLESPGMRSFLKELRPDTFEDIVAGISLYRPGPMESIPIYIENKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I +H + P+L+ T+G+++YQEQVMQI + L+GYS + AD++R+AM KK + M+ Sbjct: 645 NSNHISYLHESLKPILEVTKGIMVYQEQVMQIVRSLAGYSYARADLVRKAMSKKKMDVME 704 Query: 727 KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +++E F ISG +NGI + IA I++ + FA Y FNKSHA YA+++Y Sbjct: 705 EEREYFVYGKISGSGDIEISGCVRNGIPEKIANQIYDEMIDFAKYAFNKSHAVCYAMLAY 764 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +TA++K YP F+A+ MT D +K+ ++ ++ NI I+ P +N F V + Sbjct: 765 ETAYLKAFYPSCFMASLMTSVSDRSDKVIEYIRECADLNICILKPDINRSNSYFSVEGDH 824 Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+LA+IK +G I+ E + + F S EDF R+ K +++R +ESL+ AG D Sbjct: 825 IRYALASIKNIGIKAIDDIVQERNKNGEFQSFEDFIKRIPQKNISKRFVESLIKAGCFDS 884 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT----LEKFSVENSS 949 +R L+ + + +K+ +F++++ + + + FS++ Sbjct: 885 IHPNRASLVAGYEKVMDIVHSQKKHSIQGQVTLFSNQEALPNQNLNFFPHISDFSIKE-- 942 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRK----------MGIKGYEESVATIRGNNIRLAA 999 + E+ +G Y SGHPLD Y+ +++ I +++S I I + Sbjct: 943 -KLYMEKETIGLYLSGHPLDEYQDVIKDDTNIVSIDSIKNIPSHQKS--EIEKKKIVIVG 999 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++SK K T++ + ++T + + E FP Sbjct: 1000 TILSKMIKYTKQNKIMCFLTIEDFSGSLEVLIFP 1033 >gi|291086960|ref|ZP_06345005.2| DNA polymerase III alpha subunit [Clostridium sp. M62/1] gi|291076483|gb|EFE13847.1| DNA polymerase III alpha subunit [Clostridium sp. M62/1] Length = 1197 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1052 (37%), Positives = 597/1052 (56%), Gaps = 51/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+ + + ++ + ++AITD ++ ++F + A AGI+P Sbjct: 40 AFTHLHVHTEYSLLDASSKIKELVARAKELGMDSLAITDHGVMYGVIDFYRAAREAGIKP 99 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 ++GC++ + + G+ + ++LL EGYQ L+++VS ++ + Sbjct: 100 VLGCEIYVAPGSRFDREIGAGEDKYY---HLILLAENNEGYQNLMKIVSTGFV-EGFYYK 155 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 R+ L+ + GLI L+ +G + R + +K L ++ +FG+ ++ LQ Sbjct: 156 PRVDFETLERY-SRGLICLSACLAGEVQRNLARGMYEEGKKAALRYQSIFGEGNFFLELQ 214 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H + +++++ +PLVATN+ ++ ED ++HD+L+ + V+ ++R Sbjct: 215 DHGIPLQKTVNQGLLRMSQDTGIPLVATNDCHYIYREDEKSHDILLCIQTGKKVADENRM 274 Query: 247 RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R +YLK+ EM SIF EALENT +IA RC+ ++ +P+F + Sbjct: 275 RYEGGQYYLKSEEEMKSIFPYALEALENTHKIAERCNVEIEFGVTKIPQF-DVPGGKTSW 333 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADF 363 E NEL + G R Y D R+RLD+EL+VI M + YFLIV DF Sbjct: 334 EYLNELCEE---GFRTR---------YPDDDGTLRKRLDYELSVIQSMGYVDYFLIVWDF 381 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +A+ ++I VGPGRGS AGS+ +Y L ITDIDP+R++LLFERFLNP+R+SMPD DIDFC Sbjct: 382 IHFARSHDIMVGPGRGSAAGSIVSYCLRITDIDPIRYNLLFERFLNPERVSMPDIDIDFC 441 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG +RV QI+TFG+L AK +RDVGR L MPY++ D + K+IP D Sbjct: 442 FERRQEVIDYVVQKYGRDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDAVAKMIPGDL 501 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++L REA +DP + L+++S++LEGL RH S HAAG+VI + + V Sbjct: 502 G--MTLDKALKTPELREAYDSDPEIKYLIDMSRRLEGLPRHTSMHAAGVVISRNKVDEYV 559 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ R + TQF M +E+ GL+K DFLGL+TLT++Q ++ + +K+DL+ I Sbjct: 560 PLSRAADGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRQAEKTHHIKIDLNKID 618 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 ++D L T G+FQLESSGM+ ++ ++P+ +EDIIA +SLYRPGP+D I Y Sbjct: 619 YNDKAVLESLGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPKYL 678 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN + I P ++P+L T G I+YQEQVMQI + L+GY+L +D++RRAM KK Sbjct: 679 KGKNDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKA 738 Query: 723 EEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 M+K+++ F + G NGI + A I++ + FA Y FNKSHAAAYAV+SY Sbjct: 739 AVMEKERQNFVYGNPEEGVKGCIANGIDEKTANIIYDEMIDFAKYAFNKSHAAAYAVVSY 798 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA MT DNV K+ ++ RQ ++IMPP +N F V + Sbjct: 799 QTAYLKYYYPVEFMAALMTSVKDNVSKVSEYILTCRQMGMKIMPPDINEGEGGFSVSNGA 858 Query: 835 IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L+A+K +G T I++ ++ PF SL DF R+ +K++N+R +ES + +GALD Sbjct: 859 IRYGLSALKSIGQTVVDEIVKERTERGPFVSLADFIDRMSNKEVNKRTIESFIKSGALDS 918 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENSS 949 +R Q + + +KN ++F EK F +IT Sbjct: 919 LPGTRKQKFLVSAALLEQKNKEKKNSMEGQMSLFDFVEEEEKEQF--QITFPDVGEYTKE 976 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIR-GNNIRLAAMV 1001 E+ +LG Y SGHPL+ Y + +K I EE A +R G+ + + M+ Sbjct: 977 ELLAFEKEMLGVYVSGHPLEEYMDLWKKNVTAVSSDFIVDEEEGHAKVRDGSYVTIGGMI 1036 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K TR+ + ++T + A E FP Sbjct: 1037 TEKTVKTTRQNKMMAFITVEDLAGTVEVLIFP 1068 >gi|326559880|gb|EGE10280.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 7169] Length = 1240 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1028 (38%), Positives = 580/1028 (56%), Gaps = 83/1028 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125 IIG ++ + + K S++L + GYQ L+ L+S Y + + G Sbjct: 62 IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 126 K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT S I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228 Y+ ++R + D ++ ES ++Q A + H P TN+ D++AH Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + +A+S ++ RPR T Y K++ +M +F+DLP+A++NT +A RC+ + + Sbjct: 232 EARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITL 291 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRL 341 +LP F + + I E + + GL RL Q + Y +RL Sbjct: 292 GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERL 347 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 D+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + Sbjct: 348 DYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYD 407 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 408 LLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDV 467 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEIS 515 R P+ DR+ K+IP P + L+ D + L +P + E++ Sbjct: 468 TRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWEMA 525 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +KLEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLG Sbjct: 526 KKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDFLG 584 Query: 576 LKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMR 629 L+ LT+LQ ++D + AQ +DL +P DD + Y +L T +FQLESSGM+ Sbjct: 585 LRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMK 644 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPML 682 + L ++P IED+IA+ +LYRPGP+++ +V + +RK+G +++ HP L+ P L Sbjct: 645 KYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPL 704 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 + T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 705 ESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNID 764 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 765 GGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQV 824 Query: 803 KKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK 860 D R F + I+PPSVN F V D + I Y L A+KGVG I+ A D Sbjct: 825 VFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDG 884 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLLQS 904 F L DFC+RVD KK+ +R LE+L+ AG DC R L + Sbjct: 885 AFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQ 944 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L A +N+ ++F + LE + R EQ LG Y + Sbjct: 945 LPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLYLT 1003 Query: 965 GHPLDVYK 972 GHPLD Y+ Sbjct: 1004 GHPLDEYR 1011 >gi|326569634|gb|EGE19686.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC1] Length = 1240 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1030 (38%), Positives = 581/1030 (56%), Gaps = 87/1030 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125 IIG ++ + + K S++L + GYQ L+ L+S Y + + G Sbjct: 62 IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 126 K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT S I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228 Y+ ++R + D ++ ES ++Q A + H P TN+ D++AH Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + +A+S ++ RPR T Y K++ +M +F+DLP+A++NT +A RC+ + + Sbjct: 232 EARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITL 291 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVA--GLEVRLA------QGAIAKGYHAQDYRQ 339 +LP F I K E E K V+ GL RL Q + Y + Sbjct: 292 GINVLPDF------PIPKGETIETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDE 345 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RLD+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL Sbjct: 346 RLDYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLS 405 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 + LLFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +R Sbjct: 406 YDLLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVR 465 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLE 513 DV R P+ DR+ K+IP P + L+ D + L +P + E Sbjct: 466 DVTRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWE 523 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 +++KLEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDF Sbjct: 524 MAKKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDF 582 Query: 574 LGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSG 627 LGL+ LT+LQ ++D + AQ +DL +P DD + Y +L T +FQLESSG Sbjct: 583 LGLRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSG 642 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDP 680 M++ L ++P IED+IA+ +LYRPGP+++ +V + +RK+G +++ HP L+ P Sbjct: 643 MKKYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQP 702 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 L+ T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + Sbjct: 703 PLESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVEGAIEQN 762 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ + Sbjct: 763 IDGGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTD 822 Query: 801 KIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASA 858 ++ D R F + I+PPSVN F V D + I Y L A+KGVG I+ A Sbjct: 823 QVVFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARK 882 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLL 902 D F L DFC+RVD KK+ +R LE+L+ AG DC R L Sbjct: 883 DGAFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLW 942 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 + L A +N+ ++F + LE + R EQ LG Y Sbjct: 943 RQLPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLY 1001 Query: 963 FSGHPLDVYK 972 +GHPLD Y+ Sbjct: 1002 LTGHPLDEYR 1011 >gi|229186859|ref|ZP_04314014.1| DNA polymerase III subunit alpha [Bacillus cereus BGSC 6E1] gi|228596596|gb|EEK54261.1| DNA polymerase III subunit alpha [Bacillus cereus BGSC 6E1] Length = 1104 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/1032 (36%), Positives = 607/1032 (58%), Gaps = 62/1032 (6%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PII Sbjct: 1 MHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPII 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I ++ + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI--------FSEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 104 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ + AE+ ++ +FG+ Y++LQ H Sbjct: 105 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFGN-FYMSLQHHAI 162 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 163 QDELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKT 222 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 D +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + E N Sbjct: 223 DQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKF------PVPSNETN 276 Query: 310 E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR GL+ R G + + RL+ EL+VI+ M FS YFLIV DF+++A Sbjct: 277 DMYLRRVCEEGLQKRY-------GTPKEVHINRLNHELSVISSMGFSDYFLIVWDFMKYA 329 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 330 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRR 389 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 390 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--I 447 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 448 TLKDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 506 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ G ++D+ +P D Sbjct: 507 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIRFIVQKTGKEIDIRNLPLQD 566 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 567 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 626 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 627 HGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 686 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 687 DQERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 746 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 747 EFMTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 806 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 807 GMATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSL 866 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA A + G D + K+ V+ + F E+ VLGF Sbjct: 867 KGALEYAN-------------LARDLG---DAVPKSKY-VQGEELSFIEQLNKEKEVLGF 909 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 910 YLSSYPTAQYVKLAKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKLQKMAFITFC 968 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 969 DQNDEMEAVLFP 980 >gi|326560771|gb|EGE11138.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 103P14B1] Length = 1240 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1028 (38%), Positives = 579/1028 (56%), Gaps = 83/1028 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + GI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGDGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125 IIG ++ + + K S++L + GYQ L+ L+S Y + + G Sbjct: 62 IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 126 K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT S I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228 Y+ ++R + D ++ ES ++Q A + H P TN+ D++AH Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + +A+S ++ RPR T Y K++ +M +F+DLP+A+ENT +A RC+ + + Sbjct: 232 EARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITL 291 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRL 341 +LP F + + I E + + GL RL Q + Y +RL Sbjct: 292 GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERL 347 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 D+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + Sbjct: 348 DYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYD 407 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 408 LLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDV 467 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEIS 515 R P+ DR+ K+IP P + L+ D + L +P + E++ Sbjct: 468 TRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWEMA 525 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +KLEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLG Sbjct: 526 KKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDFLG 584 Query: 576 LKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMR 629 L+ LT+LQ ++D + AQ +DL +P DD + Y +L T +FQLESSGM+ Sbjct: 585 LRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMK 644 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPML 682 + L ++P IED+IA+ +LYRPGP+++ +V + +RK+G +++ HP L+ P L Sbjct: 645 KYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPL 704 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 + T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 705 ESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNID 764 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 765 GGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQV 824 Query: 803 KKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK 860 D R F + I+PPSVN F V D + I Y L A+KGVG I+ A D Sbjct: 825 VFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDG 884 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLLQS 904 F L DFC+RVD KK+ +R LE+L+ AG DC R L + Sbjct: 885 AFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQ 944 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L A +N+ ++F + LE + R EQ LG Y + Sbjct: 945 LPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLYLT 1003 Query: 965 GHPLDVYK 972 GHPLD Y+ Sbjct: 1004 GHPLDEYR 1011 >gi|297565291|ref|YP_003684263.1| DNA polymerase III subunit alpha [Meiothermus silvanus DSM 9946] gi|296849740|gb|ADH62755.1| DNA polymerase III, alpha subunit [Meiothermus silvanus DSM 9946] Length = 1262 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1030 (38%), Positives = 577/1030 (56%), Gaps = 74/1030 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAA 65 S F HL H+ +SLL+GA L +++ K + ++P +A+TD NLF A++F + A A Sbjct: 27 SCQFAHLHQHTQFSLLDGAARLKDLIKWVKQVSPEEPMLAMTDHGNLFGAVQFYKYATEA 86 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-Q 124 ++PIIG + + + QGK + LL EGYQ L L SR YL Sbjct: 87 EVKPIIGYEAYVAAESRFD-RKQGKGLDGGYFHLTLLAKDFEGYQNLCRLASRAYLEGFY 145 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183 GK RI L+E G+I L+G I + + AE+RLL + +FGD R + Sbjct: 146 GKP--RIDREILRE-HNAGIIALSGCLGAEIPQFILQERHEDAERRLLEYLSIFGDKRYF 202 Query: 184 VNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H ++ + ++V+ + A + L +VATN+ ++ +ED EAH V++AV Sbjct: 203 IEVQDHGLPEQKKVNRVLKEFADKYGLGIVATNDGHYVRKEDAEAHAVVLAVQSKATWDD 262 Query: 243 KDRPRVTPDH-YLKNRSEMVSIFSD--------LPEALENTVEIARRCSFIL-----QVH 288 +R + D Y+K EM S E +N++EI R C+ L Q Sbjct: 263 PNRWKFPCDEFYVKTPQEMRSTLEGERELWGKRFDELFDNSLEIGRMCNVELVPKKVQYR 322 Query: 289 AP---------------------ILPRFIEKECDDIQKE-----------EENELRNKAV 316 P +L R+ ++ DD+ +E + E+ KA+ Sbjct: 323 IPKYPLPEGRTEVTYLRELTFSGLLKRYPDRVTDDLYREFLRRLGRPVPHGDGEVLAKAL 382 Query: 317 AGLE----VRLAQGAIAKG--YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 A LE R + +G + + R +EL V+ RM F GY LIV DFI WAK Sbjct: 383 AELEDLEATRAYLPELKEGTPWGPWEILSRAVYELAVVERMGFPGYLLIVQDFINWAKSQ 442 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 I VGPGRGS AGS+ AYA IT+IDPL + LLFERFLNP R+SMPD D DF RR EV Sbjct: 443 GISVGPGRGSAAGSLVAYATRITNIDPLAYDLLFERFLNPARVSMPDIDTDFSDARRGEV 502 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I YV+++YG E VAQI TFG+L +KAA++D R +P + D L KLIP P L+ Sbjct: 503 IEYVRSRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVVFGKPTPLE 562 Query: 491 -AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 AI R DP V R++E+++KLEGL R +S HAAG+VI D PL +P+ R Sbjct: 563 KAIETIPDLRAEMEKDPLVARVMEVAKKLEGLNRQSSVHAAGVVISDVPLQDYIPLMRAG 622 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608 + VTQ++M +E G +K DFLGL+TL+ L + + + +GV +D IP DD +T Sbjct: 623 DGEGKVTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIVKESKGVDIDYDAIPIDDEKT 682 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + LL T GIFQL+S+GM + G++P I+DIIAL +LYRPGP++NI Y R +G+ Sbjct: 683 FELLGRGETKGIFQLDSAGMTSTVRGLKPRRIQDIIALGALYRPGPMENIPTYIRRHHGR 742 Query: 669 EKIV-----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 E + + ++P+L+ET G+ +YQEQ+MQIA +GYSL EAD+LRRAMGKK E Sbjct: 743 EAVAYPQFPNAAKYLEPILRETYGIPVYQEQIMQIASAAAGYSLGEADLLRRAMGKKKME 802 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM K + +F GA++ GI + A +F+LL FA+YGFNKSH+AAYA+++YQTA++K HY Sbjct: 803 EMVKHRAQFKKGAAQRGIPEDEADRLFDLLEAFANYGFNKSHSAAYAILTYQTAYVKAHY 862 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF AA +T+E + +K+ ++ + AR ++++PP +N F + + L+A+K Sbjct: 863 PVEFHAALLTVERHDSDKVAEYIRAARAMGVEVLPPDINRSSFSFSAVGQNVLFGLSAVK 922 Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG I+ E F SL DF RVDS N+RV ESL+ AGA D G R Q+L Sbjct: 923 NVGEAPTEAIIRERERGGRFKSLPDFLKRVDSAVANKRVAESLIKAGAFDELG-ERGQML 981 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 +LD++ K+AQ ++ + +FA + + TL K + R E+ LG Y Sbjct: 982 AALDDLLKWAQAERESANSGMMGLFADAQ----SEPTLPKVPPLDEITRLRYEKEALGIY 1037 Query: 963 FSGHPLDVYK 972 +GHPL Y+ Sbjct: 1038 VTGHPLQRYE 1047 >gi|296121520|ref|YP_003629298.1| DNA polymerase III, subunit alpha [Planctomyces limnophilus DSM 3776] gi|296013860|gb|ADG67099.1| DNA polymerase III, alpha subunit [Planctomyces limnophilus DSM 3776] Length = 1176 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1026 (37%), Positives = 583/1026 (56%), Gaps = 30/1026 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S F HL HS +SLL+GA L+ ++ K+ A ++AITD NL+ AL+F A Sbjct: 1 MTSSRPFAHLHCHSQFSLLDGATRLDGLIKKVKASGMNSVAITDHGNLYGALDFYLMAKG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+ PI+G + I L+ + + + + LL G+Q L++L S+ ++ + Sbjct: 61 AGVNPILGMEAYIAPGSRLEKSGASRMKEASY-HLTLLAMNRVGFQNLVKLSSKAFI--E 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + E +EGLI L+G ++G + + + AEK + + FGDR ++ Sbjct: 118 GFYYKPRIDKEILEAHSEGLICLSGCAAGELSQHLLGERFEEAEKLCHWYSQTFGDRFFM 177 Query: 185 NLQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 +Q + GY R+ + V LA LPLVATN++ +L+ ED DVL+ V + S Sbjct: 178 EIQ-NAGYQIQRDCLERTVDLAKKMGLPLVATNDAHYLNTEDAAVQDVLLCVNTKSERSD 236 Query: 243 KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R ++ + +++ EM + F +A+ + EIA R L + P F E Sbjct: 237 PKRMKMEGNQLFVRTPEEMYAAFEGFEDAVARSQEIADRVDIDLDLKTRHFPVFTTPE-- 294 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 K + + LR GL+ R + I Q++R RL FEL+VI +M + YFLIV Sbjct: 295 --NKRDIDYLRELCEEGLKWRYGEENIR-----QEHRDRLAFELSVIEKMGYPSYFLIVW 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+++A + IP RGS G++ AY L ++ + P+++ LLFERFL+P R PD DID Sbjct: 348 DFVRFAIEKGIPAS-ARGSACGALVAYVLGLSHVCPIKYDLLFERFLDPSRTEPPDIDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC+DRR +VI Y + KYG V+QI TFG+L+AKAA+RDVGR L +P +VD + KL+P Sbjct: 407 FCRDRRQDVIDYTKAKYGEANVSQIGTFGTLKAKAAIRDVGRVLAVPLKRVDEIAKLVPE 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A+ S + A DP + L + + +LEGL R A THAAG+V+ DRP+S Sbjct: 467 ELGIELK-EALEKSSDLKAAYDTDPQIRELFDYAIQLEGLARSAGTHAAGVVVSDRPISD 525 Query: 542 LVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS 599 VP+ ++DL VTQ+ +EKAGL+K DFLGL+ LT+L K++ +A RGV +D Sbjct: 526 YVPLQTISGKTDL-VTQWEGPTVEKAGLLKMDFLGLRNLTILDKAVKNVALHRGVTIDPV 584 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN-- 657 +P DD ETY LL T GIFQLES GMR L M+PD DIIA +LYRPGP++ Sbjct: 585 KLPLDDKETYALLQRGETKGIFQLESGGMRDLLTKMKPDSFNDIIATSALYRPGPLEGGM 644 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 ++ Y K+ + + +HP++D +L ET GV++YQEQVM+I L G L ++ +A+ Sbjct: 645 VMTYVEVKHKRAPLPRVHPIMDTILDETYGVMVYQEQVMRILNRLGGIELPQSYQCIKAI 704 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK E + K K +F+ G+ KNG+ + A +FE++ KFA YGFNKSH+ AYA ++YQTA Sbjct: 705 SKKKLETIAKYKAQFVEGSQKNGLPEAKATELFEMIEKFAGYGFNKSHSTAYAAVAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIY 836 ++K HYP EF+AA ++ EM++ ++I + D R+ NI+I+PP +N V+F V G ++ Sbjct: 765 FLKAHYPAEFMAALLSCEMEDTDRINEHIDDCRRMNIEIVPPDINHCDVEFTVRGPRQVA 824 Query: 837 YSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L AIKGVG T + I+EA K PF S+ D C RVD+K L++ LE LV AGALD Sbjct: 825 FGLGAIKGVGEATTQAIVEARQLKGPFTSIFDLCERVDAKSLSKGSLEILVKAGALDSIS 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVENSSV 950 R ++ + AQ ++K++ +N+F ++ G + TL + Sbjct: 885 PKRASQFACIERAVQAAQSLQKDKARGQKNLFGGDEADSQPGESTSSATLPDVPEWSHRE 944 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + E+ VLGFY + HPL + + + G + L MV S ++ T+ Sbjct: 945 KLAYEREVLGFYLTSHPLTEQAETIGRYTSYQAMQLAELEDGVEVMLGGMVSSIKKATTK 1004 Query: 1011 KGSRIG 1016 K SR G Sbjct: 1005 KPSRNG 1010 >gi|219668439|ref|YP_002458874.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense DCB-2] gi|219538699|gb|ACL20438.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense DCB-2] Length = 1190 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1047 (38%), Positives = 607/1047 (57%), Gaps = 50/1047 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VH+ YSLL+GA + ++ K P++AITD ++ ++F + AGI+P Sbjct: 2 GFVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + T + +VLL EGY+ LI+LVS M ++ Sbjct: 62 IIGCEVYVAPH---RRTEKVPGRDDNNRHLVLLAENEEGYKNLIKLVS-MAHIEGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L+ + GLI L+ +G + N + A + L ++++FG ++ +Q Sbjct: 118 RVDKDILRR-HSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQD 176 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R + + ++ +P+VATN+ ++++ED DVL+ + ++ R Sbjct: 177 HGLEEQQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMS 236 Query: 248 VTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + + LK+ +EM +F + PE LENT IA RC + LP F E + Sbjct: 237 FSSEEFFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEGYTL--- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR K + + ++RLD+EL VIA+ FSGYFLIVADF Q+ Sbjct: 294 -DTYLRKKCYEAFPLFYPN-------QRTEEKERLDYELGVIAQTGFSGYFLIVADFCQY 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++N I VGPGRGS A S+ AY + IT ++P++ LLFERFLNP+R+SMPD DIDF D Sbjct: 346 ARQNGIAVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDG 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+ VI YV KYG ++V QIITFG++ AKAA+RDVGR L +P ++VD++ K IP+D Sbjct: 406 RERVINYVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMT 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+A + D + +L EI++ LEG+ RHASTHAAG+VI L +P+ Sbjct: 466 LE-KALAVSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQ 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 R +TQF MK +E+ GL+K DFLGL+ LT++Q++L + RG +DL +P DD Sbjct: 525 RTSDGGFTMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRGEVLDLQSLPLDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T+ +L+ + G+FQLES GMR L+ ++P C EDIIA+V+L+RPGP++ I + RK Sbjct: 585 KATFDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQIPEFIRRK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G + +HPL++P+L+ T GVI+YQEQVMQIA+ L+GYSL AD+LRRAMGKK KE M Sbjct: 645 HGG-NVSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKKKEIM 703 Query: 726 DKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 +++++ F I GA K G+++ A IF+L+AKFA+YGFNK HA AYAVIS Sbjct: 704 EEERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAYAVIS 763 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K +YP+EF AA ++ M + +K+ + +ARQ I+I+PP V V F + Sbjct: 764 YQTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFSIEGR 823 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L AI+ VG I+EA + FDSL DFC RVD+K LN+RVLESL+ AGA Sbjct: 824 GIRFGLGAIRNVGVNVVEKIIEARQEGLFDSLYDFCIRVDAKVLNKRVLESLLKAGAFSL 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVR 951 R Q L +LD+I + AQ ++++ + ++F F D + +E VE S R Sbjct: 884 L-CKRAQGLLALDSILEIAQQRQRDKESGQISLF-----DFGDDLDEGIELPDVEEYSPR 937 Query: 952 --FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQ 1006 E+ LG Y SGHPL+ P L+ E+ + + G+ + L +V + Sbjct: 938 ELLTMEKEYLGLYLSGHPLESVLPKLKN---AVSEDILTCLEGDEEKKVILGGIVTGYRT 994 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 T++G + + + FP Sbjct: 995 TVTKRGEMMASFVLEDLTGTIDVLVFP 1021 >gi|294671267|ref|ZP_06736119.1| hypothetical protein NEIELOOT_02976 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306994|gb|EFE48237.1| hypothetical protein NEIELOOT_02976 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 997 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/853 (42%), Positives = 507/853 (59%), Gaps = 48/853 (5%) Query: 177 LFGDRLYVNLQRHRGYDRYRESQV--VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 LF + Y+ LQR + S LA LP+VAT+ + FL ED+ AH+ + + Sbjct: 18 LFPNAFYLELQRLPEKPEWERSVAGSTALARKLNLPVVATHPTQFLEPEDFLAHEARVCI 77 Query: 235 AHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 A ++ + RPR +P Y M F+DLPEALENTVEIA+RC+ + + LP Sbjct: 78 AEGWTLADRKRPREFSPSQYFVGAETMAERFADLPEALENTVEIAKRCNIHITLGKNFLP 137 Query: 294 RFIEKE---CDDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNV 347 F + DD + NE GL+ R+ Q + +Y++RLDFELN+ Sbjct: 138 LFPTPDGLSLDDYLVKLSNE-------GLQERMVQLYPDEAERAAKMPEYQERLDFELNI 190 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +MKF GYFLIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERF Sbjct: 191 IIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERF 250 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPDFD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++ Sbjct: 251 LNPERVSMPDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLEL 310 Query: 468 PYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 P++ D+L KLIP + P+ L A+ + + +E A+ D L+ +++KLE L R Sbjct: 311 PFTLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEAE-EADELITLAKKLEDLTRGLG 369 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA G++I +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ Sbjct: 370 MHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIE--- 426 Query: 587 DFLAQRGVK------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 +AQ +K VD+ IP DD Y + T +FQ ES+GM++ L+ Sbjct: 427 --MAQNNIKNTTGDIVDVGTIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKF 484 Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 E++IA VSLYRPGP+DNI + R G+E IHPL++ +L T G+++YQEQVMQ AQ Sbjct: 485 EELIAFVSLYRPGPMDNIPDFVARMKGQE-FQYIHPLLEGILAPTYGIMVYQEQVMQAAQ 543 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 ++ GYSL AD+LRRAMGKK EEM K +E F GA+K GIS+ + IF + KFA YG Sbjct: 544 IIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYG 603 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+ + +++K F +DA I +PP Sbjct: 604 FNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELTDTDQLKLFYEDALANGITFLPPD 663 Query: 821 VNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879 +N F G+ I Y+L A+KGVG + I+EA D F L DFC RV + +N+ Sbjct: 664 INESDYLFTPDGERHIRYALGAVKGVGEGAVQSIVEARQDGRFRDLFDFCERVGKEHMNK 723 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R LESL+ AGA D +R LL ++D A+ N FA + I Sbjct: 724 RTLESLIKAGAFDGTNPNRAMLLANIDLAIGNAEQQAANANQGGLFDFAEDA---IGAIE 780 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--------------IKGYEE 985 + + + +V+ E+ V+GFYFSGHP Y +R+ + G+ Sbjct: 781 MVETAPWGDAVKLAEEKSVIGFYFSGHPFGPYAEEIRRFAPQKLSKLKPQDSVRVAGFAT 840 Query: 986 SVATIRGNNIRLA 998 ++ TI G N +LA Sbjct: 841 AIRTIMGKNGKLA 853 >gi|57505669|ref|ZP_00371595.1| DNA polymerase III, alpha subunit [Campylobacter upsaliensis RM3195] gi|57015942|gb|EAL52730.1| DNA polymerase III, alpha subunit [Campylobacter upsaliensis RM3195] Length = 1197 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/999 (37%), Positives = 586/999 (58%), Gaps = 49/999 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YS+L+GA L + + ++A+TD N+F A++F Q + G++PI Sbjct: 4 FTHLHLHTEYSMLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMRSHGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D+L + F + L GY+ L+ L S+ Y+ G Sbjct: 64 IGLEAYLHNMDDLS-DKSSRQRF----HLCLYAKNEMGYKNLMYLSSQSYI--HGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A + L +K++FGD Sbjct: 117 RINKKLLEKHSEGLICSSACLQGEVNWHLNIHNERNVRFGAKGYEAAREAALWYKRVFGD 176 Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D R + +++L+ ++ ++ATN++ + +E EAH+V M + Sbjct: 177 DFYFEIMRHGINDQRAIDDDIIRLSKELDIKIIATNDTHYTFKERAEAHEVFMCIGMGKR 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K +M +F+D+PEA+ NT ++A +C+ L++ P P F Sbjct: 237 LNDPDRMRHSVKEFYVKTSEQMSELFADIPEAISNTQDLANKCNLELKLGDPTPPNFKFT 296 Query: 296 --------IEKECDDIQKEEENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + ++++ EN+ + GLE RL I + H +Y+ RL+ E Sbjct: 297 REYAKEFNVALAQENVEFSFENDDLVFEHLCRKGLEERLK--FIDESKH-DEYKARLETE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 + +I MKFSGY LIV DFI+ AK NIPVGPGRGS AGS+ AYAL ITDIDPL ++LLF Sbjct: 354 IKIIKEMKFSGYMLIVHDFIKVAKDKNIPVGPGRGSAAGSLVAYALKITDIDPLPYNLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFC+DRRDEVI YV +KYG ++VAQ+ TF L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCRDRRDEVINYVIDKYGSDKVAQVSTFNKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L + VD KL+P + + +A + + +E P L E ++ LEGL R+ Sbjct: 474 LDISLQDVDEFIKLVPEELKITLD-EAYEKEPKIKEFIEKHPKGKELWEYAKSLEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L P++R ++D +TQ++ +E LIKFDFLGLKTLTL+ Sbjct: 533 AGVHAAGLVISNESLWNKTPLFRQSKNDERHLITQYSKDHLEDVDLIKFDFLGLKTLTLI 592 Query: 583 QKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 HNAIKLIKERYNKDIVWESIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPENFE 652 Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 D+IA+++LYRPGP+++ ++ + +RK+G +KI+ ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DLIAVLALYRPGPMESGMLDDFIDRKHGLKKIIYPFDVLKEVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K+ F +GA K G ++ A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMAKLKDEFANGAEKQGYNRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAY +I++QTA++KT+YP EF+AA +T E + +E + + ++ ++ NI+++PP Sbjct: 773 GFNKSHSAAYGLITFQTAYLKTYYPSEFMAALLTSEQNKIENVAMYIEEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873 +N +F G I Y L AIK VG +++E S + F L DF S++D Sbjct: 833 RINKAISEFSAIKQEDGTEAIVYGLGAIKSVGGPAIENVLELRSKNGDFKDLHDFLSKID 892 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + K+NRR LE + AG+ D FG++R L +LD + + A+ + + R N ++F E+ Sbjct: 893 TAKINRRTLEGFIKAGSFDDFGFTRKCLFNNLDTLAESARKMAEVRKNSASSLFGAEELN 952 Query: 934 FSDKITLEKFSVENSSV-RFENEQRVLGFYFSGHPLDVY 971 KI + + E ++ + E+ +LG Y SGHPLD + Sbjct: 953 ADTKINIVMDNSEFEAMEKLGYEKEILGIYISGHPLDKF 991 >gi|261367002|ref|ZP_05979885.1| DNA polymerase III alpha subunit [Subdoligranulum variabile DSM 15176] gi|282571120|gb|EFB76655.1| DNA polymerase III alpha subunit [Subdoligranulum variabile DSM 15176] Length = 1150 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1028 (37%), Positives = 580/1028 (56%), Gaps = 50/1028 (4%) Query: 32 ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91 + + + A Q A AITD ++ + F A AAGI+PIIGC++ + + N+ Sbjct: 1 MFEHLKAMGQTACAITDHGVMYGCVAFFDAAKAAGIKPIIGCEVYVATRTRFDKVNR--- 57 Query: 92 PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151 ++LL GY+ LI++VS +L +G S L E EGLI L+ Sbjct: 58 -IDGNSHLILLCKNEVGYRNLIKMVSAGFL--EGFYSKPRIDKDLLEQHHEGLICLSACL 114 Query: 152 SGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHEL 209 +G I +A + A++ L ++ LFG + Y+ LQ H D+ Q+++LA + Sbjct: 115 AGEIPKAILAGDYERAKQTALYYRDLFGAENYYIELQDHGLEEDQVVLPQLIRLARETGI 174 Query: 210 PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLP 268 P+VATN++ ++++ED + +L+ + ++ DR D YLK+ EM +FS +P Sbjct: 175 PMVATNDAHYITKEDSKMQSILLCIQTGKTIADADRMEFQTDEFYLKSADEMYELFSMVP 234 Query: 269 EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328 EA ENT +IA +C+F LP F + D + E + GLE R Sbjct: 235 EACENTNKIAEQCNFEFTFGETKLPYF--RAPDGM--ENQAYFEKLCWEGLERRYP---- 286 Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388 G R+RL +E+ V+ M ++ Y+LIV DFI +AK +IPVGPGRGSGAGS+ AY Sbjct: 287 --GKVTDALRERLAYEIKVVKNMGYTNYYLIVYDFINYAKSRDIPVGPGRGSGAGSLAAY 344 Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448 + ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +RR EVI YV KYG + VAQI+T Sbjct: 345 CVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYERRQEVIDYVNEKYGRDHVAQIVT 404 Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS-RFREARLADPS 507 FG++ A+AA+RDVGR + M Y VD++ KLIP + ++LQ D S + AD Sbjct: 405 FGTMAARAAVRDVGRVMGMAYQDVDKVAKLIPME--LKMTLQKALDVSPDLKAMYEADAQ 462 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 V L++ S K+EG+ RHASTHAAG+VI P ++ VP+ LPVTQFNM IE+ G Sbjct: 463 VRELIDTSLKVEGMPRHASTHAAGVVITREPATEYVPL--STNDGLPVTQFNMVEIERLG 520 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 L+K DFLGL+TLT++ + + ++ + ++ I +DD +TY +L T GIFQLES+G Sbjct: 521 LLKMDFLGLRTLTVIHDTETAVRRKDPEFRMATISYDDPDTYAMLAKGETEGIFQLESTG 580 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 M Q L M+P +EDIIAL+SLYRPGP+D+I Y + KI P + +L T G Sbjct: 581 MTQVLVSMRPRNLEDIIALISLYRPGPMDSIPTYLRNRREPGKISYKTPQLAHILDVTNG 640 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS---------- 737 I+YQEQVMQI + L+G+S +AD +RRAM KK + M+ ++E F+ G + Sbjct: 641 CIVYQEQVMQIFRELAGFSFGQADNIRRAMSKKKHKVMEAEREHFVHGCTEPGKECAGCV 700 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNGI + +A I++ + FA Y FNKSHAA YA +++QTA++K HYP EF+AA +T +D Sbjct: 701 KNGIPEDVANEIYDEMISFASYAFNKSHAACYAYVAFQTAYLKCHYPHEFMAALLTSVLD 760 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857 N K+ ++ + ++ I+++ P +N F + I + L A+K VG +++ Sbjct: 761 NTSKVIEYTTECQRLGIKVLQPDINVSRGGFTADGDCIRFGLNAVKSVGRNLIDAVVKER 820 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 ++P+ L DFC R+ +LNRR LE+L+ +GA D SR +L+ ++ I K + + Sbjct: 821 QNRPYRGLYDFCRRMYGNELNRRALENLIKSGAFDALEPSRRAMLECVEGILKSVETDMR 880 Query: 918 NRTNKHENIFAHEKG----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 ++F G T + + K S +S + E+ V G Y SGHPLD Y+ Sbjct: 881 QNLEGQMDLFGMMSGESQETAINDYKVPKLSEYPTSDLLKMEKEVSGLYLSGHPLDAYRE 940 Query: 974 ILRKMGIKGYEESVATIRG--------NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 + ++ ++A ++G + + VV + T+ + + + T + Sbjct: 941 QIAQISTC----TIAQLQGEEAKQFDNQTVTILCTVVKNKIMTTKSNTLMAFTTIEDLTG 996 Query: 1026 EYEANFFP 1033 E FP Sbjct: 997 TMELLVFP 1004 >gi|322382903|ref|ZP_08056738.1| DNA polymerase III DnaE-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153172|gb|EFX45627.1| DNA polymerase III DnaE-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1210 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/1053 (35%), Positives = 602/1053 (57%), Gaps = 48/1053 (4%) Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75 +HS YSLL+GA ++++ ++ A A+A+TD ++ + F + GI+PIIGC++ Sbjct: 1 MHSEYSLLDGAARIHDLTERAAELGMSALALTDHGVMYGTIAFYKACKQRGIKPIIGCEV 60 Query: 76 DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 + N+ + P + ++LL GY+ L++L S +L + RI Sbjct: 61 YFTTGSIRQKGNRQEQP---IYHLILLAKNNTGYRNLMKLCSIGHL-EGFHYKPRIDAEH 116 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195 L +EGLI L+ + + + + A K ++ +FG+ Y+ +Q H ++ Sbjct: 117 LA-AHSEGLICLSACLGSEVSQHLLHDRKEDARKAAERYRSIFGEDFYLEIQDHGMMEQK 175 Query: 196 R-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHY 253 + +++L+ +PL+ATN+ ++ E D+E DVL+ + V +DR ++ T Y Sbjct: 176 KVMHSMIELSRETGIPLIATNDVHYVREPDHEVQDVLICIGTGKTVEDEDRLKMGTSQLY 235 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313 LK R M ++F+ +PEA+ NT ++A +C +++ ILP F E +L Sbjct: 236 LKTREAMAALFAHVPEAVLNTEKVAAQCQVEIELGHSILPSFEPIPESLTAAEYLKQLCL 295 Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373 + ++G + + Q+L +EL+VI M FS YFLIV DFI++A + I Sbjct: 296 EGISGRYGTRQEWNDPSSDFRKQVEQKLYYELDVIESMGFSDYFLIVWDFIRYAHEQGIM 355 Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433 GPGRGS AGS+ AYAL ITD+DP+ ++LLFERFLNP+R++MPD DIDF +RRDEVI Y Sbjct: 356 TGPGRGSSAGSLVAYALNITDVDPIEYNLLFERFLNPERITMPDIDIDFNDERRDEVIDY 415 Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493 V KYG ERVAQIITFG++ AKAA+RDVGR L +PY++VD+ KLIPN + A+ Sbjct: 416 VVRKYGKERVAQIITFGTMAAKAAVRDVGRVLNLPYNEVDKAAKLIPNHLGMTID-HALE 474 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 +S RE P LL +++++EG+ RHASTHAAG+VI PL+ VP+ ++ Sbjct: 475 VNSDLRELAEKQPKTAELLNMAKRVEGMPRHASTHAAGVVISRDPLTDYVPL-QEGTEQT 533 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLL 612 P+TQ++M+ +E GL+K DFLGL+TL++++++L ++ Q G VD + D +TY LL Sbjct: 534 PLTQYSMEHLESIGLLKIDFLGLRTLSIIERTLAWIKEQEGKLVDWTQTDKSDPKTYELL 593 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 + T G+FQLES GMR+ L+ ++P EDII++++LYRPGP++ I Y K+ + + V Sbjct: 594 SRGETTGVFQLESPGMRRVLKELKPSRFEDIISVLALYRPGPMEFIPQYIACKHKQTEPV 653 Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732 HP ++ +LK+T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E +D+Q+ F Sbjct: 654 YPHPSLETILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVLDEQRSHF 713 Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792 + G+ G + A ++++++ +FADYG+ ++HA AY V+++QTA++K HYP F+A+ + Sbjct: 714 VEGSLGQGFTAEEANHVYDMIVRFADYGYPRAHATAYGVLAFQTAYLKAHYPRHFMASML 773 Query: 793 TLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCVDFKVG--------------- 831 T N K+ ++ + R+ + ++PP +N TP G Sbjct: 774 TAVTGNQRKMAEYVDECRRMKLDVLPPDINESGVLFTPVASPGFGTEPARYAGEPAEEGM 833 Query: 832 ------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 + I + LAAIK VG + +++ + F SL DFC RVD + N+RV+ESL Sbjct: 834 ADKIPVNGAIRFGLAAIKNVGASAIEAVLKERRKETFTSLLDFCRRVDLRICNKRVIESL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDKITL 940 + AGA D R QL+ LD+ + A K + + ++F H + D L Sbjct: 894 IQAGAFDTLPGHRAQLVAMLDDTAEAALKWRKEKDDLQLHLFGFVEEPHWEVEVPDVPML 953 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 K + + E+ ++G Y SGHPLD ++ +L ++ + + + +A M Sbjct: 954 TKLQ------QLDYERELIGMYLSGHPLDAHEDLLGRLEADPLYQLQEYPDHSEVVVAGM 1007 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V S + T++G + ++ + + E FP Sbjct: 1008 VASSKTIVTKRGEPMAFMELEDRIAKVEIVLFP 1040 >gi|303241705|ref|ZP_07328202.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] gi|302590706|gb|EFL60457.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] Length = 1169 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1070 (36%), Positives = 617/1070 (57%), Gaps = 69/1070 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA + +++ + +IAITD ++ ++F ++A GI+PI Sbjct: 4 FVHLHVHTEYSLLDGANRIKDLIKRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC+ + + QG + P +VLL GY+ L+++VS + + Sbjct: 64 LGCE--VYTAKRTRHDKQG--VLDSDPGHLVLLAKDNRGYKNLMKIVS-IGFTEGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 RI L+ +EGLI L+ SG + +A N + A+K + +FG Y+ LQ Sbjct: 119 RIDFEVLERY-SEGLIALSACLSGDVPKALMNNDFERAKKVSQRYNDIFGKGNFYLELQS 177 Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + G + + SQ+V+L+ +PLVATN++ +L +ED AH+VL+ + ++ +DR Sbjct: 178 N-GIEEQKLVNSQLVKLSKETGIPLVATNDAHYLRKEDARAHEVLLCIQTGKNMNDEDRM 236 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T D Y+K+ EM +F ++PEA++NTV+I C+ L+ LP+F + D K Sbjct: 237 RFSTEDFYVKSPEEMADVFVNVPEAIQNTVKIGEMCNVELEFGKLHLPKFSIPDNKDAFK 296 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 L+ GL RL I +D +RL++EL+VI +M + YFLIV DFI+ Sbjct: 297 Y----LKELCYEGLN-RLFGECI------EDKLERLEYELSVIKQMGYVDYFLIVGDFIK 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK N IPVGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R++MPD DIDFC + Sbjct: 346 YAKDNGIPVGPGRGSAAGSLVAYCLGITNIDPLKYNLLFERFLNPERVTMPDIDIDFCFE 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG ++V+QIITFG++ A+AA+RDVGRAL + YS+VD + K+IP Sbjct: 406 RRQEVIDYVVRKYGEDKVSQIITFGTMAARAAIRDVGRALDIAYSEVDIVAKMIPMQIGM 465 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + + D + +++ ++ LEG+ RHASTHAAG+VI P+++ VP+ Sbjct: 466 NIG-KALEMNPELKAKYEQDNLIKDMIDTARLLEGMPRHASTHAAGVVISKDPITEYVPL 524 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ S TQF M +E+ GL+K DFLGL+TLT+++ ++D + + K+D+ + + Sbjct: 525 QKNDES--VTTQFPMGQLEELGLLKMDFLGLRTLTVIRDAVDLVYENYNTKLDIDRLEMN 582 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + ++ T G+FQLES+GM Q ++ +QP +EDIIA +SLYRPGP+D I Y Sbjct: 583 DPNVFKIIGEGKTSGVFQLESAGMTQFMKELQPTSLEDIIAGISLYRPGPMDQIPRYIKN 642 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN + HPL++ +L T G ++YQEQVMQI + L GYS+ +D++RRAM KK Sbjct: 643 KNVPAGVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLGGYSMGRSDLVRRAMSKKKISV 702 Query: 725 MDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 M+++++ FI G +NG+ + IA IF+ + FA Y FNKSHAAAYAV+ Sbjct: 703 MEQERKNFIHGIDDENGNIVVMGCVRNGVDEKIANKIFDEMMDFASYAFNKSHAAAYAVV 762 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTAW+K +YPVEF+AA + + + +KI ++ + + NI+++PP +N + F V + Sbjct: 763 AYQTAWLKCYYPVEFMAALLNSFLGSSDKISQYVHECKVLNIEVLPPDINESQMKFTVVN 822 Query: 833 NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +I + LAA+K VG + ++ E D + S DFC R+D K +N+R +ESL+ +GA Sbjct: 823 GKIRFGLAAVKNVGEGAVKSVIDERRTDGNYRSFRDFCDRIDGKDVNKRCIESLIKSGAF 882 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN---- 947 D G R +L+ + + ++K ++F GT DK+ + S Sbjct: 883 DSMGVYRSRLIAVFEKMLDGIAQIKKRNMEGQLSLFELSMGT-DDKVNSSETSFYEDEDI 941 Query: 948 --------SSVRFENEQRVLGFYFSGHPLDVYKPILRKM--------------GIKGY-- 983 + V E+ +LG Y SGHPL ++ L KM + Y Sbjct: 942 YPDINEYPNKVLLSMEKEMLGLYISGHPLSEFEEELNKMVSLFSSELNVDANQSEEAYSL 1001 Query: 984 EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +++ G N+ + ++ SK+ K TR + + ++T + E FP Sbjct: 1002 DDAKNISDGMNVIVGGIITSKKTKTTRNNNLMAFLTLEDLYGMMEVIVFP 1051 >gi|237752431|ref|ZP_04582911.1| DNA polymerase III subunit alpha [Helicobacter winghamensis ATCC BAA-430] gi|229375920|gb|EEO26011.1| DNA polymerase III subunit alpha [Helicobacter winghamensis ATCC BAA-430] Length = 1164 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/1009 (37%), Positives = 593/1009 (58%), Gaps = 58/1009 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++P F HL +H+ YSLL+G + + KI ++A+TD N+F A+EF + A Sbjct: 2 MSQTPKFTHLHLHTEYSLLDGLNKVKVLAKKIKEYGMDSVAVTDHGNMFGAIEFYKAMKA 61 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI+G ++ + + +++++ F + L EGY+ L+ L S+ L Sbjct: 62 EGIKPILG--MEAYLHNAEEISDKSNQRF----HLCLYAKNLEGYKNLMYLSSQACLYGF 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID------------RAFFFNSSQVAEKRLL 172 + RI L+E + GLI + +G + R + + +VA L Sbjct: 116 HMKP-RISKKMLRE-HSAGLICSSACLNGEVQWHLNTKKDDNKGRKGYERAKEVA----L 169 Query: 173 TFKKLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 +K++FG+ Y+ L RH G + + ++Q+++L+ + ++ATN++ + ++ D A +V Sbjct: 170 EYKEIFGEDFYLELMRH-GIEEQQLIDNQLLKLSQETGIKIIATNDTHYANQSDSTAQEV 228 Query: 231 LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + +R R T + Y+K +M +++DLPEALE+T EIA +C+ L + Sbjct: 229 AFCIGFGKDFDDPNRMRHTVQEFYIKTPEQMAELYADLPEALEHTQEIANKCNLELHLGD 288 Query: 290 PILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 P P F + E D ++ E K GL+ RL + + H + Y +RL+ Sbjct: 289 PTPPSFKFTQEYAKAEGLDFTQDSEY-FAYKCREGLKKRLLN--VPQEKHTE-YAERLER 344 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E+ +I MKF GY LIV DF++ AK+ IPVGPGRGS AGS+ A+ L IT+IDPL++ LL Sbjct: 345 EIEIINSMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPLKYDLL 404 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD D+DFCQ RR E++ YV KYG VAQ+ITFG ++AKA +RDV R Sbjct: 405 FERFLNPERVSMPDIDMDFCQSRRGEILDYVTEKYGRHNVAQVITFGMMKAKAVIRDVAR 464 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKL 518 + MPY+ D KLIP + L+ +D+ +E ++A DP ++ E + L Sbjct: 465 VMGMPYNDADSFAKLIPKE------LEITLEDAFNKEPKIAELISRDPLAKKVWEFALIL 518 Query: 519 EGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 EG R+ THAA +VI + L P+YR R + TQ++MK++E LIKFDFLGLK Sbjct: 519 EGTKRNPGTHAAAVVIDSTQELWHKAPLYRSQRDGIIATQYSMKYLEDVDLIKFDFLGLK 578 Query: 578 TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 TLT++ +L + +R G ++D I +D + Y L + TLG+FQ+ESS + + M+ Sbjct: 579 TLTVVDDALKLIEKRSGKRIDFLNIDVNDKKVYETLQSGNTLGVFQIESSMFQGINKRMR 638 Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694 P EDIIA ++L RPGP+++ +V + NRK+GKE IV + ++P+L+ T G I+YQEQ Sbjct: 639 PSTFEDIIATIALGRPGPLESGMVDDFINRKHGKEPIVYMFDELEPILRPTYGTIVYQEQ 698 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VMQI Q + G+SL AD++RRAMGKK + M K +F GA G + A ++EL+ Sbjct: 699 VMQIVQRIGGFSLGGADLIRRAMGKKDAQIMADNKSKFADGAVAQGFDRAKAEELWELIV 758 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 KFA YGFNKSH+AAYA+I+++TA++KT+YP EF+AA +T E ++ +K+ ++ ++A Q I Sbjct: 759 KFAGYGFNKSHSAAYAMITFETAYLKTYYPKEFMAALLTSEKNDTDKVVEYTEEANQMGI 818 Query: 815 QIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFC 869 +++PPS+ ++F V G+ I + L AIKG G I+E + F LEDF Sbjct: 819 KVLPPSIQKSELEFSVAEVDGEASILFGLGAIKGAGEIAINIILEERKQNGNFKDLEDFL 878 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 R+D K+N++ LE+ + +GALD GY+R LL+ ++++ + A+ + + ++F + Sbjct: 879 KRIDPSKVNKKSLEAFIKSGALDGMGYTRKSLLEQVESLTEAAKLSQTAQKEAAGSLFGN 938 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 ++ ++ L+ + E E+ LGFY SGHPLD YK +++ Sbjct: 939 DEELMRVQLDLQDLGEYSQKEILEFEKESLGFYASGHPLDAYKESFKEI 987 >gi|237756627|ref|ZP_04585141.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium yellowstonense SS-5] gi|237691212|gb|EEP60306.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium yellowstonense SS-5] Length = 1166 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1055 (37%), Positives = 601/1055 (56%), Gaps = 49/1055 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +HS YSLL+G + + K A A+ +TD N+F A+EF ++ G++P+ Sbjct: 5 FVHLHLHSHYSLLDGMIKPKELAKKAAEYGYKAVGLTDHGNIFGAVEFYEEMRKVGVKPL 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + + +G T + ++L G++ L++L S Y +G Sbjct: 65 IGME-SYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSIAYT--EG-FY 120 Query: 129 VRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + + W L E EGLI T G + + A+K K +FGD LY +Q Sbjct: 121 YKPRIDWELLEKYHEGLICQTACLKGFVPNLLAQGKYEEAKKYGKRLKDIFGDDLYFEIQ 180 Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV----SQ 242 + ++ ++ +++LA + +V TN+S +L+ ED+ AHDV+ A+ + S+ Sbjct: 181 INGLEEQNIANEGIIRLAKELGVKVVGTNDSHYLNPEDHTAHDVVKALQMKKTLKELYSE 240 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKE 299 RV H+ + EM F E L+NT+EIA +C+ + + + P+F E Sbjct: 241 GKAFRVKGLHFTRP-EEMYEKFKGYEEYLKNTMEIAEKCNLEIDTAETRGYLFPKFETPE 299 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E R GLE RL ++YR+RLD+E+NVI +M F+ YFLI Sbjct: 300 GMTPAQYFEKLARE----GLEKRLESIKDLTPEKLKEYRERLDYEINVINQMGFAEYFLI 355 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AKKN IPVGPGRGS GS+ AY L IT++DPLR LLFERFLNPDR+SMPD D Sbjct: 356 VQDFINYAKKNGIPVGPGRGSAGGSLVAYCLRITEVDPLRHGLLFERFLNPDRISMPDID 415 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC +RR++VI YV+ KYG + VAQIITF +++K +RDV R L PY + DR+ K+I Sbjct: 416 VDFCMERREKVIDYVKQKYGEDSVAQIITFNFMKSKMVIRDVARTLGFPYQEADRIAKMI 475 Query: 480 PNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 P +L + + F++ D ++ LL++++KLEG RH HAAGIVI Sbjct: 476 LPGPTQGSTLTIDENLEAHPDFKKLYETDENIRELLDLARKLEGSARHTGIHAAGIVIAP 535 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595 PL + VP+YRD + TQF MK +E+ GL+K DFLGLKTLT L + +R GV Sbjct: 536 GPLDEYVPVYRDKDGN-RATQFEMKTLEQLGLVKMDFLGLKTLTELDYMKKLIKERHGVD 594 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD + +PFDD + LL + T G+FQLES GM+ L ++P +++IIA+++L+RPGP+ Sbjct: 595 VDYNSLPFDDQNVFKLLQSGRTTGVFQLESKGMQDLLVRLKPSNLDEIIAILALFRPGPL 654 Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 + +V Y RK+G++ I + +LKET G+I+YQEQ+M ++ +LSG++++EAD L Sbjct: 655 MSGMVDEYIERKHGRKPIEYPFEEVKDILKETYGLIVYQEQIMFMSNILSGFTMAEADTL 714 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 R+A+GKK E M K K+RFI GA + G SK +++ + KFA Y FNKSH+ AYA ++ Sbjct: 715 RKAIGKKNPEVMAKMKDRFIGGAVERGFSKEKVEKLWDDIEKFASYSFNKSHSTAYAYLT 774 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832 Y TAW+KT+YP EF A ++ E +N K D FNI+++PP VN +F + + Sbjct: 775 YWTAWVKTYYPEEFFAVKLSTE-NNDSKFLNLLLDMENFNIKLLPPDVNKSMPEFAIEEK 833 Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 ++I + L+ IKG+G A+ I+E + PF + DFC R D+K N++VLESL+ AGA Sbjct: 834 SKIRFGLSRIKGIGEEVAKSIVEEREKNGPFVDIFDFCERFDTKVANKKVLESLIKAGAF 893 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-------HEKGTFSDKITLEKFS 944 D G R LL++++ Q +++ ++FA + K + D L Sbjct: 894 DFEGIDRGILLENVEKAITTGQKARDSKSAGQNSLFALTTTPVVNVKHIYEDGTKL---- 949 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIR----GNNIRLA 998 E +R E E VLGFY SGHPL+ YK L+ +K E ES + G+ +++A Sbjct: 950 TEKEKLRLEKE--VLGFYLSGHPLNAYKKELKNKVLKISEIIESAFGDKTFQSGSKVKIA 1007 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ + KKT+ G+ + S+ + + FP Sbjct: 1008 GVIDEIKYKKTKSGATMVVFQISDETGQMDVRAFP 1042 >gi|116332230|ref|YP_801948.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125919|gb|ABJ77190.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1147 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1010 (38%), Positives = 590/1010 (58%), Gaps = 44/1010 (4%) Query: 43 AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102 ++A+TD N+F A+EF +A GI+PIIG + + + + T K + ++LL Sbjct: 11 SVAMTDHGNMFGAVEFYNEATKQGIKPIIGSEFYVS-PNRKQETEMVKIADGSAYHLILL 69 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 EGY+ LI L S+ Y K++ RI L + GL+ LT +G ++R Sbjct: 70 AKNEEGYKNLIRLSSKSYTEGFYKKA-RIDYDLLAQ-HNGGLVCLTACLAGEVNRKILEG 127 Query: 163 ----SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNS 217 S Q+A K F+K + Y+ +Q H ++ Q+ +PLV TN+S Sbjct: 128 KIDESFQLAGKLNEIFRK---EDFYMEIQNHGIPEQMTVAKQIYDFGKRTGIPLVVTNDS 184 Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 FL ++D EA D+L+ + ++ + Y+K+ EM +F ++PEA NT+EI Sbjct: 185 HFLKKDDQEAQDILLRIGMQKRITDPMEFGFNGEFYVKSPDEMARVFPEIPEAFYNTLEI 244 Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQ 335 + + LQ +LP F E D A + LE + +G I + Y + Sbjct: 245 SNKVDLKLQFGNYLLPEFEVPEGYD------------ADSYLEKLIWEG-IGRKYPNLSP 291 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 + + R+ FELN I MKF+GYFLIV D+I +AK+N IPVGPGRGS AGS+ AYAL IT++ Sbjct: 292 EIKDRVVFELNTIKNMKFAGYFLIVQDYINYAKRNGIPVGPGRGSAAGSIVAYALGITNV 351 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 +PL+ +LLFERFLNPDR MPD D DFC +RR+EVI Y++ +YG E+V QIITF SL AK Sbjct: 352 EPLQHNLLFERFLNPDRKDMPDIDTDFCVERREEVINYIRRRYGEEKVGQIITFNSLAAK 411 Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515 AAL+DV R L +P+ + + + K PN ++ +A+ S + D ++ I+ Sbjct: 412 AALKDVARVLNLPFGEANEMTKAFPNKLGMSIA-EALTTSSELKNFSEKDDINHKIFAIA 470 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIK 570 Q+LEG YR HAAG+VI PL ++VP+ + P VTQ++ +E GLIK Sbjct: 471 QRLEGNYRQPGRHAAGVVISPYPLEEVVPLSTVAEKERPGSRSIVTQYDKNNLESIGLIK 530 Query: 571 FDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 D LGLK LT L ++ + +RGV++DL IP++D TY LL TLGIFQLES+G+ Sbjct: 531 MDILGLKNLTTLDYAIKLIERRRGVRIDLDEIPYNDANTYALLRKANTLGIFQLESTGIT 590 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687 + Q + ++I+AL++LYRPGP+ ++ Y +RK+G++++ HP +P+LKET G Sbjct: 591 DLVAKSQVNNFDEIVALIALYRPGPMGEGMLDEYLDRKSGRKQVTYPHPSCEPILKETFG 650 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 V +YQEQVM I++++ G+S+ ++DVLR+AM KK + M+K K +F+ GA K GI + +A Sbjct: 651 VPVYQEQVMSISRVVGGFSVGDSDVLRKAMAKKKADLMEKLKYQFVEGAVKQGIQEKVAK 710 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 + FE L +F YGFNKSH+ AYA+I+YQTA++K +Y +E+L A + + I K+ Sbjct: 711 DFFEQLERFGGYGFNKSHSVAYAIITYQTAYLKANYTIEYLTALLASDHGKTTDIVKYIN 770 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP--FDS 864 +AR+ I+I+ P V+ F V D+ I + L+A+KGVG T A I+EA DK F + Sbjct: 771 NAREMGIRILNPDVSESQASFNVIDDATIRFGLSAMKGVGETAANSIIEAR-DKAGNFKT 829 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 L+DF +D++ +N++V E+L+ AGALD FGY+R L +S+D+I +AQ E+ RTN+ + Sbjct: 830 LQDFALNIDTRLINKKVFEALIQAGALDSFGYTRKCLFESVDSILTFAQR-EQERTNEGQ 888 Query: 925 -NIFAHEKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++F + +F+ + L K ++E + E+ + G Y SGHPLD Y+ L+ + Sbjct: 889 FSLFGVGESSFT--LNLPKDALEWEIDEKLRREKAIAGLYLSGHPLDKYEKQLKSLRTIP 946 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E+ G+ + +A ++ SK K +++ + E E F Sbjct: 947 IEKFDNLKSGSKVEVAGIISSKNIKLSKRNEEFANFKLEDRTGEIECVAF 996 >gi|118443745|ref|YP_877379.1| DNA polymerase III DnaE [Clostridium novyi NT] gi|118134201|gb|ABK61245.1| DNA polimerase III, alpha chain [Clostridium novyi NT] Length = 1167 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1068 (36%), Positives = 615/1068 (57%), Gaps = 62/1068 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL H+ YSLL+G+ + ++++ ++AITD +F ++F +KA AG Sbjct: 2 KGQKFVHLHTHTEYSLLDGSGKIGGLIERAKELGMDSLAITDHGTMFGCVDFYKKAKEAG 61 Query: 67 IQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 I+PIIG ++ + + N+K ++ +VLLV GY+ L+++VS+ +D Sbjct: 62 IKPIIGSEIYVASKSMNIKRNDRENKNH----HLVLLVKNEIGYKNLMKIVSKA-AIDGF 116 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L+E +EGLI L+ +G + + + A + L +K +F D Y+ Sbjct: 117 YYKPRVDHEYLRE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKDGFYLE 175 Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H G D+ +++L+ ++PLVATN+ ++ +ED ++HDVL+ + + Sbjct: 176 LQYH-GIDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDT 234 Query: 244 DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR R P + YLK+ EM FS +PEALENTV+IA C+F H LP F E D Sbjct: 235 DRMRYEPQNFYLKSPEEMYDTFSYVPEALENTVKIAEECNFDYVFHESKLPNFPLPESKD 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E EL K GL+VR + + ++RL++EL VI +M + YFLIV D Sbjct: 295 -HFEYMKELCYK---GLKVRYPE-------ITPELKERLEYELGVIKQMGYVDYFLIVWD 343 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F +++ + I GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DF Sbjct: 344 FFRFSHEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDF 403 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV KYG + V+QI+TFG++ +A +RDVGRA+ Y++VDR+ K+IP Sbjct: 404 CYERRGEVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTV 463 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ + +EA D V L+++++ LEGL RH STHAAG+VI +PL Sbjct: 464 LGITID-KALEMNPELKEAYDIDSRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNY 522 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+ ++ + VTQF M +E+ GL+K DFLGL+TLT+++ ++D + ++ G ++DL I Sbjct: 523 VPLSKN--EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLVKKKTGTEIDLDKI 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 F+D Y +L T+G+FQLES+GM ++ ++P+ +EDIIA +SLYRPGP+ I Y Sbjct: 581 NFEDENVYAMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKY 640 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 KN + I + P ++P+L T GV++YQEQVMQI + L+GYS+ +D++RRAM KK Sbjct: 641 IKNKNNPKDIEYLTPKLEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKK 700 Query: 722 KEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 + M+++++ FI G +NGIS+ +A I++ + FA Y FNKSHAAAY Sbjct: 701 HKVMEEERKNFIYGIEDEKGNVIVPGCLRNGISEEVANKIYDQMMDFASYAFNKSHAAAY 760 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 AV++Y TA++ +YP EF+AA + N +K+ + + A+Q I+++PP +N F Sbjct: 761 AVVAYYTAYLVYYYPTEFMAAILNSVRGNSDKVAAYIRAAKQMEIEVLPPKINKSFGKFT 820 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V + +I + L+AIK VG +I + +K F+S DFC+++ S +N+R++ESLV A Sbjct: 821 VQNGKIRFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVESLVKA 880 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947 GA DCFG R Q+L + I K + ++F F D +I + Sbjct: 881 GAFDCFGIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLFGSFDDEFKDTEIKYPAIDEFD 940 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILR----------------------KMGIKGYEE 985 + E+ + G Y +GHPL+ Y+ +L+ ++ + E+ Sbjct: 941 KKSKLAMEKEMTGLYLTGHPLEDYEEVLKNRTSAKTTDIIVDESLEEELIDEVTLHIEEQ 1000 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + + ++ + +K TR S + ++T + E FP Sbjct: 1001 NSKIKDGDKVIIGGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFP 1048 >gi|89894058|ref|YP_517545.1| hypothetical protein DSY1312 [Desulfitobacterium hafniense Y51] gi|89333506|dbj|BAE83101.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1190 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1047 (38%), Positives = 608/1047 (58%), Gaps = 50/1047 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VH+ YSLL+GA + ++ K P++AITD ++ ++F + AGI+P Sbjct: 2 GFVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + T + +VLL EGY+ LI+LVS M ++ Sbjct: 62 IIGCEVYVAPH---RRTEKVPGRDDNNRHLVLLAENEEGYKNLIKLVS-MAHIEGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ + GLI L+ +G + N + A + L ++++FG ++ +Q Sbjct: 118 RVDKDILRK-HSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQD 176 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R + + ++ +P+VATN+ ++++ED DVL+ + ++ R Sbjct: 177 HGLEEQQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMS 236 Query: 248 VTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + + LK+ +EM +F + PE LENT IA RC + LP F E + Sbjct: 237 FSSEEFFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEGYTL--- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR K + + ++RLD+EL VIA+ FSGYFLIVADF Q+ Sbjct: 294 -DTYLRKKCYEAFPLFYPN-------QRTEEKERLDYELGVIAQTGFSGYFLIVADFCQY 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++N I VGPGRGS A S+ AY + IT ++P++ LLFERFLNP+R+SMPD DIDF D Sbjct: 346 ARQNGIAVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDG 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+ VI YV KYG ++V QIITFG++ AKAA+RDVGR L +P ++VD++ K IP+D Sbjct: 406 RERVINYVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMT 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+A + D + +L EI++ LEG+ RHASTHAAG+VI L +P+ Sbjct: 466 LE-KALAVSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQ 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 R +TQF MK +E+ GL+K DFLGL+ LT++Q++L + RG +DL +P DD Sbjct: 525 RTSDGGFTMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRGEVLDLQSLPLDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T+ +L+ + G+FQLES GMR L+ ++P C EDIIA+V+L+RPGP++ I + RK Sbjct: 585 KATFDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQIPEFIRRK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G + +HPL++P+L+ T GVI+YQEQVMQIA+ L+GYSL AD+LRRAMGKK KE M Sbjct: 645 HGG-NVSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKKKEIM 703 Query: 726 DKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 +++++ F I GA K G+++ A IF+L+AKFA+YGFNK HA AYAVIS Sbjct: 704 EEERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAYAVIS 763 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K +YP+EF AA ++ M + +K+ + +ARQ I+I+PP V V F + Sbjct: 764 YQTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFSIEGR 823 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L AI+ VG I+EA + F+SL DFC RVD+K LN+RVLESL+ AGA Sbjct: 824 GIRFGLGAIRNVGVNVVEKIIEARQEGLFESLYDFCIRVDAKVLNKRVLESLLKAGAFSL 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVR 951 R Q L +LD+I + AQ ++++ + ++F F D + +E VE S R Sbjct: 884 L-CKRAQGLLALDSILEVAQQRQRDKESGQISLF-----DFGDNLDEGIELPDVEEYSPR 937 Query: 952 --FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQ 1006 E+ LG Y SGHPL+ P L+ E+ + + G+ + L +V + Sbjct: 938 ELLTMEKEYLGLYLSGHPLESVLPKLKN---AVSEDILTCLEGDEEKKVILGGIVTGYRT 994 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 T++G + + + FP Sbjct: 995 TVTKRGEMMASFVLEDLTGTIDVLVFP 1021 >gi|326563512|gb|EGE13771.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 12P80B1] Length = 1240 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1033 (37%), Positives = 580/1033 (56%), Gaps = 93/1033 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + A I+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIDASIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125 IIG ++ + + K S++L + GYQ L+ L+S Y + + G Sbjct: 62 IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 126 K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT S I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228 Y+ ++R + D ++ ES ++Q A + H P TN+ D++AH Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + +A+ ++ RPR T Y K++ +M +F+DLP+A+ENT +A RC+ + + Sbjct: 232 EARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITL 291 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----------- 336 +LP F + + I E + + GL RL K Y ++ Sbjct: 292 GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLE-----KLYPVEERGDDWDQVRKP 342 Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 Y +RLD+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+D Sbjct: 343 YDERLDYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLD 402 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 PL + LLFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A Sbjct: 403 PLSYDLLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARA 462 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------R 510 +RDV R P+ DR+ K+IP P + L+ D + L +P Sbjct: 463 VVRDVTRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALE 520 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 + E+++KLEGL R+ HA G++I +S +Y D PV+Q++ +E GL+K Sbjct: 521 IWEMAKKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVK 579 Query: 571 FDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLE 624 FDFLGL+ LT+LQ ++D + AQ +DL +P DD + Y +L T +FQLE Sbjct: 580 FDFLGLRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLE 639 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----L 677 SSGM++ L ++P IED+IA+ +LYRPGP+++ +V + +RK+G +++ HP L Sbjct: 640 SSGMKKYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHEL 699 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 + P L+ T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA Sbjct: 700 LQPPLESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAI 759 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 + I +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD Sbjct: 760 EQNIDGGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMD 819 Query: 798 NVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIME 855 + +++ D R F + I+PPSVN F V D + I Y L A+KGVG I+ Sbjct: 820 DTDQVVFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVA 879 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRM 899 A D F L DFC+RVD KK+ +R LE+L+ AG DC R Sbjct: 880 ARKDGAFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRR 939 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 L + L A +N+ ++F + LE + R EQ L Sbjct: 940 GLWRQLPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATL 998 Query: 960 GFYFSGHPLDVYK 972 G Y +GHPLD Y+ Sbjct: 999 GLYLTGHPLDEYR 1011 >gi|253682356|ref|ZP_04863153.1| DNA polymerase III subunit alpha [Clostridium botulinum D str. 1873] gi|253562068|gb|EES91520.1| DNA polymerase III subunit alpha [Clostridium botulinum D str. 1873] Length = 1166 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/988 (37%), Positives = 580/988 (58%), Gaps = 45/988 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL H+ YSLL+G+ + ++ + ++AITD +F ++F +KA AGI+P Sbjct: 5 NFVHLHTHTEYSLLDGSGKIGGLISRAKELGMKSLAITDHGTMFGCVDFYKKAKDAGIKP 64 Query: 70 IIGCQLDIDMQD----NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 IIGC++ + L N+ +VLLV +GY+ L+++VS+ + + Sbjct: 65 IIGCEIYVSSNSMHIKRLDAENRNH-------HLVLLVKNEQGYKNLMKIVSKASI-EGF 116 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L+E +EGLI L+ +G + + + A + L +K +F + Y+ Sbjct: 117 YYKPRVDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKEKAREIALFYKDIFKEGFYIE 175 Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H G D+ +V+LA ++PLVATN+ ++ +ED ++H+VL+ + + + Sbjct: 176 LQYH-GIDKQLRVNEMLVELARELDIPLVATNDVHYIKKEDAKSHEVLLCIQTGKTLDDE 234 Query: 244 DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR + P + YLK+ EM FS + +ALENT +IA C+F H LP F E D Sbjct: 235 DRMKYEPQNFYLKSPEEMYETFSYVSDALENTNKIADECNFDYIFHESKLPNFPLPEGID 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E EL K GLE+R + + ++RL++EL+VI M + YFLIV D Sbjct: 295 -HFEYMKELCYK---GLEIRYEKVT-------DELKERLEYELDVIKEMGYVDYFLIVWD 343 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F +++ + I GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DF Sbjct: 344 FFRFSHEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDF 403 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV KYG + V+QI+TFG++ +A +RDVGRA+ Y++VDR+ K+IP Sbjct: 404 CYERRGEVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTV 463 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ + RE D + L+++++ LEGL RH STHAAG+VI +PL Sbjct: 464 LGITID-KALEMNPELREVYDKDTRIKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNY 522 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+ ++ + VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + G+++DL I Sbjct: 523 VPLSKN--EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIELIKKNTGIEIDLDKI 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 F+D Y++L T+G+FQLES+GM ++ ++P+ +EDIIA +SLYRPGP+ I Y Sbjct: 581 NFEDENVYNMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKY 640 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 KN + I I P ++ +L T GV++YQEQVMQI + L+GYS+ +D++RRAM KK Sbjct: 641 IKNKNNPKNIEYITPELEGILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKK 700 Query: 722 KEEMDKQKERFISGAS-----------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+++++ FI G +NGIS+ A I++ + FA Y FNKSHAAAY Sbjct: 701 HKVMEEERKNFIYGIEENGKVVVPGCLRNGISEESANKIYDQMMDFASYAFNKSHAAAYG 760 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 V++Y TA++ +YP EF+AA + N +K+ + + A+Q +I+ +PP +N F V Sbjct: 761 VVAYYTAYLVHYYPTEFMAAMLNSVRGNSDKVAIYIRAAKQMDIETLPPDINKSFGKFTV 820 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + +I + L+AIK VG I+++ +K F+S DFC+++ +N+R++ESL+ AG Sbjct: 821 QNGKIRFGLSAIKNVGENIIDVIVKSREEKGEFNSFVDFCNKISMGSINKRMVESLIKAG 880 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948 D FG R QLL + I K ++F + F +I N Sbjct: 881 VFDSFGIYRSQLLAVYEKIIDSVVSQRKKNIEGQVSLFGNFDNEFKGVEIKYPAIDEFNK 940 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILR 976 + E+ + G Y +GHPL+ Y+ IL+ Sbjct: 941 KSKLAMEKEMTGLYLTGHPLEDYEEILK 968 >gi|295112106|emb|CBL28856.1| DNA-directed DNA polymerase III (polc) [Synergistetes bacterium SGP1] Length = 1154 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1053 (36%), Positives = 613/1053 (58%), Gaps = 58/1053 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA+ + K+A PA+A+TD ++ A+EF + AAG++PI Sbjct: 5 FVHLHVHTEYSLLDGAIRTKQLAAKVADWSVPAVAMTDHGVMYGAVEFYENCRAAGVKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ +D + +GK ++LL EGY+ L++LVS + D R Sbjct: 65 LGCEIYVDPDGHRSREKKGKNNH-----LILLAENEEGYRNLVKLVS-IANTDGFYYKPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV--NLQR 188 I L G+I + +G + + A KR L ++ + G Y + Sbjct: 119 IDHDLLASC-ARGIIASSACLAGEVPQLVLQGREDEAAKRALLYQDIMGKGNYFLEIMSN 177 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++++A +PL+AT+++ +L+ EDYE H +L+ + + Sbjct: 178 TLPEQAVVNKALIRIAKDTGIPLIATSDAHYLNAEDYEWHKILLRINTHADDTDDAFGFS 237 Query: 249 TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAP--ILPRFIEKECDDIQK 305 D YL++ EM +IF +++PEAL+NTV IA RC +++ +LP +E + Sbjct: 238 VNDFYLRSPEEMDAIFGAEVPEALDNTVAIAERCGVEMKLKTGHYMLPSLELQEGMTLDS 297 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E+E R AGL +RL +Y +RL++ELNVI RM FS YFLIVA IQ Sbjct: 298 HLEDEAR----AGLRMRLNADT-----PPAEYAERLEYELNVITRMGFSAYFLIVAGIIQ 348 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 AK+ IP+GPGRGS AGS+ A++L IT++DPL+++LLFERFLNP+R+SMPD D D Sbjct: 349 AAKERGIPIGPGRGSAAGSLVAWSLRITELDPLKYNLLFERFLNPERISMPDIDTDVSDR 408 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 R+++++++ +YG +RV+QIITFG ++++ A++DVGRA+ M Y+ +DR+ KLIP D A Sbjct: 409 GREQLLKHIVERYGSDRVSQIITFGRMKSRQAVKDVGRAVGMEYALMDRVAKLIPAD-AR 467 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ E DP + +L ++ +EGL RHAS HAAG+VI P++ LVP+ Sbjct: 468 SIR-EALERTPELTELAEEDPRIKNVLRTAEHIEGLARHASQHAAGVVITPVPITDLVPI 526 Query: 546 YRDVRSDLP------------VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 R ++S P VTQF M+ +EK GL+K DFLGL+TL++L+++++ + G Sbjct: 527 RR-IKSTAPSAPDGELDVTQTVTQFTMEPVEKLGLVKMDFLGLQTLSILEEAVENIRLNG 585 Query: 594 VK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 DL +P DD TY LL T+G+FQLES G+R L ++ DC +D++A +++YRP Sbjct: 586 KNPPDLLSLPMDDPATYKLLQEADTMGVFQLESDGIRGMLRKLRIDCFDDLVAALAMYRP 645 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+D+ +V Y K+G+ K+ HPL++ +LK+T GVI+YQEQVMQ A +L+GY+L EA Sbjct: 646 GPLDSGMVDQYIKCKHGQAKLEYPHPLLEDVLKDTYGVILYQEQVMQSASVLAGYTLGEA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK E M +Q+ +F+ GA + GI + A IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DLLRRAMGKKKVEVMQEQRAKFLDGARQKGIDEKTASGIFDLIEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDFK 829 ++SYQTA++K +Y EF+A+ ++ +M + + + + ++ RQ I ++PP VN+ F Sbjct: 766 LVSYQTAYLKANYKAEFMASYLSSQMKSKKDVLGHYVREVRQSGISVLPPDVNSSMESFT 825 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I + L A+ VG I++A + PF SL DF RVD +NR ++E+L+ AG Sbjct: 826 AVGDVIRFGLGAVLRVGHNAVEAIVKAREEGPFKSLWDFLRRVDLHDMNRAMIENLIKAG 885 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGT--FSDKITLEKFS 944 A D +R +L+ +L + AQ + ++F + G+ D +E++ Sbjct: 886 AFDEITPNRARLVAALPDFILAAQKMAAG--GDQLSLFDAIGDDSGSDPEPDLPDVEEYG 943 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---RGNNI-RLAAM 1000 + + + + E+ V G Y SGHP D + +RK S+A + RG ++ + Sbjct: 944 IYD---KLDYEKEVTGLYISGHPFDSCEAQVRKYA----NCSIADLPLWRGKTAPKVGGL 996 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++S +K T+KG +G + + FP Sbjct: 997 ILSVSEKTTKKGDLMGVLLLEDSESSVSMVAFP 1029 >gi|119487742|ref|ZP_01621251.1| DNA polymerase III subunit alpha [Lyngbya sp. PCC 8106] gi|119455575|gb|EAW36712.1| DNA polymerase III subunit alpha [Lyngbya sp. PCC 8106] Length = 1206 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1108 (36%), Positives = 624/1108 (56%), Gaps = 119/1108 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++++ + PAIA+TD ++ A+E ++ + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPQLIERAVELKMPAIAVTDHGVMYGAIELIKQCRSKGIKP 61 Query: 70 IIGCQLDI------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 IIG ++ + Q LK +Q V+L +GY+ L++L + +L Sbjct: 62 IIGNEMYVINADVTQQQGRLKKYHQ-----------VVLAKNTKGYKNLVKLTTISHL-- 108 Query: 124 QGKQS----VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 QG Q R C++ L + EGLI+ + G + +A S VA K ++ +F Sbjct: 109 QGFQGKGIFARPCINKELLKQYHEGLIVTSACLGGELPQAILQGRSDVARKVAKWYQDVF 168 Query: 179 GDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 G+ Y+ +Q H DR ++V++A ++ ++ATN+S F+S D EAHD L+ + Sbjct: 169 GEDYYIEIQDHGSPEDRIVNVELVKIAREFDIKIIATNDSHFISCYDVEAHDALLCINTQ 228 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHA-- 289 ++++ R R + YLK+ EM +F D LP EA+ NT+E++ + + Sbjct: 229 KLITEDKRMRYSGTEYLKSAEEMAQLFRDHLPDDVIREAIANTIEVSEKIEPYTGILGES 288 Query: 290 -----PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRL 341 PI P + L GL RL Q I ++ YR+RL Sbjct: 289 RIPDYPIPPNHTS----------DTYLEEVTWKGLIERL-QDQIKIQTRSEIPPVYRERL 337 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 ++EL ++ +M FS YFL+V D+I++A+ + IPVGPGRGS AGS+ AY+L IT+IDP+ Sbjct: 338 EYELKMMQKMGFSTYFLVVWDYIKYARDHQIPVGPGRGSAAGSLVAYSLGITNIDPVHHG 397 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R SMPD D DFC RRDE+IRYV N+YG ++VAQIITF + +KA L+DV Sbjct: 398 LLFERFLNPERKSMPDIDTDFCIARRDEMIRYVTNQYGEDKVAQIITFNRMTSKAVLKDV 457 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDS---RFREA--------------RL 503 R L +PYS+ D++ KLIP P L+ I+DD+ F+ A + Sbjct: 458 ARVLGIPYSKSDQMAKLIPVSRGKPAKLKVMISDDTPSPEFKSAYETEDVPIKNDLGNEV 517 Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563 V + ++++ ++EG + HAAG+VI +PL ++VP+ R+ + +TQ+ M+ I Sbjct: 518 GTIPVRQWIDMAIRIEGTNKTFGVHAAGVVISKQPLDEIVPLQRNNDGAV-ITQYFMEDI 576 Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--------------------VKVDLSLIPF 603 E GL+K DFLGLK LT++Q+ ++ + + K + +P Sbjct: 577 EALGLLKMDFLGLKNLTIIQRVVELIEENHHFKMIPDQLPFDERKACQILAKGKIKKLPE 636 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 D +TY LL G+FQLESSGMRQ + ++P IEDI ++++LYRPGP+D ++ + Sbjct: 637 DIQKTYKLLERGDLEGVFQLESSGMRQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKF 696 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 +RK+ + I HPL++ +L+ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK Sbjct: 697 IDRKHKRVPIEYEHPLLESILQETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKK 756 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EM KQ+E FI G++KNG+SK IA ++F+ + FA+Y FNKSH+ AY ++YQTA++K Sbjct: 757 LSEMQKQREAFIDGSTKNGVSKQIAEHLFDQMLAFAEYCFNKSHSMAYGFVTYQTAYLKA 816 Query: 782 HYPVEFLAASMTLEMDNVEKIKKF---CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +YPVE++AA +T DN +K++K+ CQ R I+++ P VN VDF D I + Sbjct: 817 NYPVEYMAALLTENSDNTDKVQKYIDSCQ--RSLKIKVVSPDVNHSNVDFTPSDGEIIFG 874 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L+AIK VG T +I+ A + F L DFCSRV +N R LESL+ GALD + Sbjct: 875 LSAIKNVGETAIENILAARKEGGKFSDLPDFCSRVSLHIVNSRALESLIKCGALDSLHQN 934 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKFSVENSSVRF 952 R Q ++ L+ + +AQ K+R +IF K T K ++ + Sbjct: 935 RKQAIEYLNFLIPWAQGKAKDREIGQSSIFDLLGDTTTKSTNEGAPKPPKTDDFSTPEKL 994 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE-------ESVATIRGNNIRLAAMVVSKQ 1005 + E+ +LGFY S HPL + IK Y + +A +G +++ ++V + Sbjct: 995 QFEKELLGFYVSEHPL--------QSVIKAYPVEDAITLQDLAEHKGKKVKVFLVIVEVK 1046 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + T+KG + ++ + + + EA FP Sbjct: 1047 RHVTKKGETMAFLKVEDMSGQAEAIVFP 1074 >gi|229062288|ref|ZP_04199609.1| DNA polymerase III subunit alpha [Bacillus cereus AH603] gi|228717016|gb|EEL68697.1| DNA polymerase III subunit alpha [Bacillus cereus AH603] Length = 1107 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/1032 (36%), Positives = 605/1032 (58%), Gaps = 59/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPII Sbjct: 1 MHLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPII 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ + AE+ T++ +F + Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFSN-FYISLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 D +YLK+ EM ++FS EA++NT+ IA RC + H LP+F + E N Sbjct: 224 DQYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKF------PVPSNETN 277 Query: 310 E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR GL+ R G + + RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 278 DTYLRRVCEEGLQKRY-------GTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + + +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLRDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ ++ G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK +I +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRRIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T + I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E +K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 808 GMATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSL 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA D + K+ V+ + F E+ LGF Sbjct: 868 KGALEYANLARDF--------------DLGDAVPKSKY-VQGEELSFIEQLNKEKEALGF 912 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 YLSSYPTAQYAELGKELEIPSLAQAMRHKKKVQ-RAIVYITSVKVIRTKKLQKMAFITFC 971 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 972 DQNDEMEAVIFP 983 >gi|324008246|gb|EGB77465.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 57-2] Length = 773 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/789 (44%), Positives = 502/789 (63%), Gaps = 34/789 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMT 793 EF+AA MT Sbjct: 764 AEFMAAGMT 772 >gi|229013809|ref|ZP_04170937.1| DNA polymerase III subunit alpha [Bacillus mycoides DSM 2048] gi|229135439|ref|ZP_04264226.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST196] gi|229169331|ref|ZP_04297041.1| DNA polymerase III subunit alpha [Bacillus cereus AH621] gi|228614094|gb|EEK71209.1| DNA polymerase III subunit alpha [Bacillus cereus AH621] gi|228648000|gb|EEL04048.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST196] gi|228747478|gb|EEL97353.1| DNA polymerase III subunit alpha [Bacillus mycoides DSM 2048] Length = 1107 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/1032 (36%), Positives = 605/1032 (58%), Gaps = 59/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPII Sbjct: 1 MHLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPII 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G I + + + +P +VLL GYQ L+++ S ++ + K+ I Sbjct: 61 GLTASI-------FSEEEERSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--I 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL +GLI ++ G G I++ + AE+ T++ +F + Y++LQ H Sbjct: 106 PKKWLAHYA-KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFSN-FYISLQHHAI 163 Query: 192 YDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 164 QDELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKT 223 Query: 251 D-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 D +YLK+ EM ++FS EA++NT+ IA RC + H LP+F + E N Sbjct: 224 DQYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKF------PVPSNETN 277 Query: 310 E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR GL+ R G + + RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 278 DTYLRRVCEEGLQKRY-------GTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RR Sbjct: 331 HENHILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + + +D KLIP+ + Sbjct: 391 DEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLG--I 448 Query: 488 SLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ ++S+ RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + Sbjct: 449 TLRDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI- 507 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ ++ G ++D+ +P D Sbjct: 508 QEGHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQD 567 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K Sbjct: 568 EKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESK 627 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GK +I +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ + Sbjct: 628 HGKRQIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDIL 687 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D++++ F+ G +NG +T + I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y + Sbjct: 688 DQERKHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTL 747 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+ A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ + Sbjct: 748 EFMTALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNI 807 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G T ++E +K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 808 GMATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSL 867 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGF 961 +YA D + K+ V+ + F E+ LGF Sbjct: 868 KGALEYANLARDF--------------DLGDAVPKSKY-VQGEELSFIEQLNKEKEALGF 912 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S +P Y + +++ I +++ + R + S + +T+K ++ ++TF Sbjct: 913 YLSSYPTAQYAELGKELEIPSLAQAMRHKKKVQ-RAIVYITSVKVIRTKKLQKMAFITFC 971 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 972 DQNDEMEAVIFP 983 >gi|189502058|ref|YP_001957775.1| hypothetical protein Aasi_0650 [Candidatus Amoebophilus asiaticus 5a2] gi|189497499|gb|ACE06046.1| hypothetical protein Aasi_0650 [Candidatus Amoebophilus asiaticus 5a2] Length = 1148 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1028 (37%), Positives = 603/1028 (58%), Gaps = 49/1028 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL H+ YSLL+G ++ + K A+AITD N+F F +A GI+PI Sbjct: 4 FTHLHCHTQYSLLDGTAKIDKLFGKAKQLGMQALAITDHGNMFGVPHFVAQAKKQGIKPI 63 Query: 71 IGCQ--LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC+ L DM NLK KT + + LL GY+ +++L S + L+ Sbjct: 64 IGCEFYLAADMH-NLKE----KTRYHQL----LLAKNEVGYKNIVKLCS-ISFLEGYYYK 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ +EGLI T +G + +A + AEK L++ +FG+ Y+ LQR Sbjct: 114 PRIDKELLKKY-SEGLIATTCCLAGEVPQAIMRKGEEEAEKVFLSWLNIFGEDYYIELQR 172 Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + ++V+ + A +++ ++ATN+ ++ ++D A D+L+ + + +R R Sbjct: 173 HGLKEQDKCNEVLLKWAQKYQVKVIATNDVHYVEQQDSLAQDILLCLQTGKDYNDPNRMR 232 Query: 248 VTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK- 305 D + LK+ EM+++F D+P+A+ NT EI I +++ P L R I I + Sbjct: 233 FDGDQFFLKSPQEMLTLFHDIPQAVSNTQEI------IDKINTPSLERDILLPVFQIPQG 286 Query: 306 --EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +++ LR+ A+ G + R GAI+ D R+++EL VI +M F GYFLIV DF Sbjct: 287 FTSQDSYLRHLAIEGAKKRF--GAISA-----DLEARINYELGVIQQMGFPGYFLIVQDF 339 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQ AK + VGPGRGS AGSV AY + ITDIDP+R++L FERFLNP+R+SMPD DIDF Sbjct: 340 IQAAKNLQVVVGPGRGSVAGSVVAYCIGITDIDPIRYNLFFERFLNPERVSMPDIDIDFD 399 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + R +VI YV +KYG +VA IITFGS+ AK+A+RDV R L +P + + + KL+P Sbjct: 400 DEGRQKVIEYVVDKYGKNQVAHIITFGSMAAKSAIRDVARVLGLPLERTNYIAKLVPEKL 459 Query: 484 A--HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P S + + + + ++ ++ ++L +++ LEG RH HAAGI+I L Sbjct: 460 GITLPESFEEVLELAELKKN--SNTLEGKVLSLAETLEGSARHTGVHAAGIIIAPDDLLN 517 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 +P+ D SDL VTQ++ +EK G++K DFLGLKTL++++ ++ + + G K+DL Sbjct: 518 HIPVKTDKNSDLLVTQYDGSIVEKVGMLKMDFLGLKTLSIIKDAIALIEKLHGTKIDLEQ 577 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD +T+ L T+ FQ ES GMRQ L+ +QP E++IA+ +LYRPGP+ I Sbjct: 578 LPLDDLKTFKLYQQGDTIATFQFESEGMRQWLKKLQPTEFEELIAMNALYRPGPMQFIPN 637 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK+G+EKI HPL+ +LK T G+++YQEQVMQ AQ+++GYSL AD+LR+AMGKK Sbjct: 638 FIARKHGQEKIDYPHPLLVDILKNTYGIMVYQEQVMQTAQIIAGYSLGGADLLRKAMGKK 697 Query: 721 IKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 EEM KQ+E F+ GA KN + T A+ IFE++ KFA YGFN++H+AAY+VI+YQTA++ Sbjct: 698 QPEEMAKQREIFVQGAQEKNNLPSTKAIEIFEVMEKFAQYGFNRAHSAAYSVIAYQTAYL 757 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYS 838 K HYP E++A+ +T +++ KI F ++ + IQ++ P VN V+F V + I + Sbjct: 758 KAHYPAEYMASVLTHNQNDIGKISFFMEECIRQGIQVLGPDVNESQVNFDVTPKQGIRFG 817 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896 L AIKG G HI+ E + F + F RVD + +N++ LESL +GA D F G Sbjct: 818 LTAIKGAGEGAVSHIIAEREKNGHFTDIFSFVERVDLRMVNKKTLESLAMSGAFDGFTGC 877 Query: 897 SRMQLLQSLDNIQ-------KYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENS 948 R Q L + D +Y +++ + + +++FA + + K + + Sbjct: 878 HRRQYLFAADGEHNLLVKAIQYGNQIKQEKASAQQSLFAMDDNFQYIQKPPIPTCEPYDK 937 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E+ ++GFY SGHPLD ++ L G+ +++ T + +RLA ++ K Sbjct: 938 IEKLRMEKELVGFYISGHPLDQFRVELANF-CDGHTQNILTFKQKEVRLAGIITECSIKY 996 Query: 1009 TRKGSRIG 1016 ++G G Sbjct: 997 NKQGRPFG 1004 >gi|291279285|ref|YP_003496120.1| DNA polymerase III subunit alpha [Deferribacter desulfuricans SSM1] gi|290753987|dbj|BAI80364.1| DNA polymerase III, alpha subunit [Deferribacter desulfuricans SSM1] Length = 932 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/919 (41%), Positives = 566/919 (61%), Gaps = 35/919 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL +H+ YSLL+GA+ ++ ++ K+ A+AITD ++ ++F +A A I+PI Sbjct: 5 FIHLHLHTQYSLLDGAIHISELMKKLKEHGSKAVAITDHGTMYGIVDFYTQALANDIKPI 64 Query: 71 IGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC++ + D + N + + + +VLL G + L LVS ++ + Sbjct: 65 IGCEVYVAPDSRFNKNYSKKEDKSY----HLVLLAKNNAGLKNLQYLVSLGHI-EGFYYK 119 Query: 129 VRICLSWLQEIGTEGLIMLTGG-SSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 RI L + ++GLI L+ +S P +A + A++ L + ++FG D Y+ + Sbjct: 120 PRIDKELLAKY-SKGLIGLSACLASEPAQKALT-DGYAAAKESALEYYEIFGKDNYYLEI 177 Query: 187 QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q + ++Y + + ++++ +P+VATNN FL++EDY +H VLM + + ++ +R Sbjct: 178 QDNNIPEQYIVNTIFMEISRETGIPIVATNNCHFLNKEDYSSHQVLMCIQYQQTLNDPNR 237 Query: 246 -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + + ++K+ EM F ++ EAL NTV+IA RC+ + LP + E ++ Sbjct: 238 RDSHSSELFVKSPEEMWQAFGEIEEALINTVKIAERCNVSMTFGELHLPVYDVPEGYTLK 297 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 L + A GL RLA+ + H++ Y QRL++EL +I + GY+LIV DFI Sbjct: 298 ----TYLEHIAKEGLHKRLAKVPLE--LHSK-YYQRLEYELKIIHEKGYDGYYLIVWDFI 350 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A+KN IPVGPGRGSGAGS+ AYA+ ITDIDP+++ LLFERFLNP+R SMPDFDID C Sbjct: 351 NFARKNKIPVGPGRGSGAGSLVAYAVGITDIDPIKYKLLFERFLNPERKSMPDFDIDICM 410 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EVI YV+NKYGH+RVAQIITFG L A+ +RDVGR L++P VD++ K+IP P Sbjct: 411 NRREEVIDYVRNKYGHDRVAQIITFGKLLARGVIRDVGRVLEIPLKTVDKIAKMIPAKPD 470 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ D + + LLE + KLEGL R+A HAAG+VI D+PL + VP Sbjct: 471 LTLK-KALEMDPELKPNIESIEKGKELLEHALKLEGLLRNAGMHAAGVVISDKPLVEYVP 529 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + + ++D VTQF +EK GL+K DFLGLK LT++ + + + + D+S IP Sbjct: 530 LCKG-QNDEVVTQFEKDTLEKVGLVKLDFLGLKNLTVIDYASKLIRKSKDPNFDISAIPL 588 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 DD +T+ LL++ T G+FQLESSGM+ L+ ++P EDII LV+LYRPGPI + ++ + Sbjct: 589 DDKKTFELLSSGETTGVFQLESSGMKNLLKKLKPTTFEDIIVLVALYRPGPIGSGILDDF 648 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+G +++ P ++ +LKET G+I+YQEQVMQIAQ+++GYSL AD+LRRAMGKK Sbjct: 649 LKRKHGLQEVTYPLPELEEILKETYGIIVYQEQVMQIAQIVAGYSLGSADLLRRAMGKKK 708 Query: 722 KEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 EEM K ++ F I GA K G + IA IF+L+AKFA+YGFNKSH+AAYA++S Sbjct: 709 PEEMAKHRKIFLYGDEKLGIEGAVKRGFDEKIASEIFDLMAKFAEYGFNKSHSAAYAMVS 768 Query: 774 YQTAWMKTHYPVEFLAASMT--LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 YQTA++K HYPVE++A+ +T E +I++ + I ++ P +N D V Sbjct: 769 YQTAYLKAHYPVEYMASIITQEFEFKYNYRIEELIAECNNMGITVLLPDINKSEKDTVVE 828 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 N I L AI + I E + + F +L+DFC R+D +N+ + S + GA+ Sbjct: 829 RNLIKVGLKAIHDNDEIIDKIIFERNRNGEFKNLKDFCKRIDLTIVNKNAISSFIKYGAM 888 Query: 892 DCFGYSRMQLLQSLDNIQK 910 D FG SR QLLQ L++ K Sbjct: 889 DSFGKSRKQLLQVLNDTIK 907 >gi|225018880|ref|ZP_03708072.1| hypothetical protein CLOSTMETH_02830 [Clostridium methylpentosum DSM 5476] gi|224948350|gb|EEG29559.1| hypothetical protein CLOSTMETH_02830 [Clostridium methylpentosum DSM 5476] Length = 1155 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1054 (37%), Positives = 601/1054 (57%), Gaps = 62/1054 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK FVHL +H+ +SLL+GA + + Q A+AITD N+F ++F A Sbjct: 21 EKKMGFVHLHLHTEFSLLDGACRIKELAAYAKKLGQDALAITDHGNMFGTIDFYSACKAE 80 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + + ++ T P+ +VLL GY+ LI+LVS Y+ + Sbjct: 81 GIKPIIGCEVYVAPRTRFDKVHR----IDTSPNHLVLLCKNETGYRNLIKLVSAGYI--E 134 Query: 125 GKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAF----FFNSSQVAEKRLLTFKKLFG 179 G S RI + LQE +EGLI L+ +G I RA + + Q+AE ++ G Sbjct: 135 GFYSRPRIDHNLLQE-HSEGLIALSACLAGEIPRALTAGDYGRAKQIAE----FYRDTMG 189 Query: 180 -DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 D ++ LQ H G R Q+V+LA + LVATN+ ++ ED + VL+ + Sbjct: 190 PDNYFIELQDH-GIKEQRAILPQLVKLAQQVGVGLVATNDVHYIRREDSKTQKVLLCIQT 248 Query: 237 STVVSQK---DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + ++ + P T + YLK+ EM S+F A+ENT IA RC+ + LP Sbjct: 249 GKTLDEELAIEFP--TQEFYLKSEEEMQSLFGSFEGAIENTARIAERCNLEFEFGVTKLP 306 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD---FELNVIAR 350 F E N NK +RL + K Y Q + LD +E++VI Sbjct: 307 HF----------EPPNGEDNKE---FFLRLCHDGLKKYYGEQPDPKILDRFHYEIDVIDS 353 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F Y+LIV DF+++AK++ IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP Sbjct: 354 MGFVDYYLIVYDFVRYAKEHGIPVGPGRGSGAGSIIAYCIGITGIDPIKYNLLFERFLNP 413 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC +RR EV+ YV KYG + VAQI+TFG+L A+ A+RDVGR + MPY Sbjct: 414 ERVSMPDFDIDFCYERRPEVLDYVIRKYGADHVAQIVTFGTLAARGAIRDVGRVMGMPYD 473 Query: 471 QVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 VD++ K +P P +++ A+ + +DP V L++ ++KLEG+ R+ STHA Sbjct: 474 VVDKIAKQVPIHPGITITIDSALKKSPELKAMADSDPQVRELIDTARKLEGMPRNTSTHA 533 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI D+P++ VP+ ++ S VTQ+ M I GL+K DFLGL+ LT++ Sbjct: 534 AGVVITDKPVTDYVPLSKNDES--IVTQYTMNTIADLGLLKMDFLGLRNLTVISD----- 586 Query: 590 AQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 A+RGV+ ++ IP DD ET+ +L+ + G+FQ ES+GMR+ L M+PDC+ED+I Sbjct: 587 AERGVRRFEPEFAINKIPLDDKETFDMLSQGQSDGVFQFESAGMRKMLSRMKPDCLEDLI 646 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 A++SLYRPGP I + + E+I + +L T GVI+YQEQVMQI + L+G Sbjct: 647 AVLSLYRPGPAQFIDAFIENRIHPERITYRDERLRHILDVTYGVIVYQEQVMQIFRELAG 706 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YS ADV+RRA+ KK M++++ +FI GA NG+S+ A IF ++ FA Y FNKS Sbjct: 707 YSYGRADVVRRAISKKKAGVMEQERIKFIEGAVANGLSERDAEAIFNDMSSFASYAFNKS 766 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 HAAAY+++SYQTA++K HYP E++AA + + + +K+ + + R+ +IQ++PP +N Sbjct: 767 HAAAYSLVSYQTAYLKCHYPREYMAALLNSVIYSTDKVISYIGECRKQHIQVLPPDINRS 826 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883 + F V D I + L A+K VG I+E A+ F+SL +F R+ +++LN+ + Sbjct: 827 QIGFTVSDGSIRFGLLAVKKVGKGVIERIVEEREANGAFESLYNFVERMHNRELNKAAIL 886 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 + + GA D F +R Q+ +S + I + +++ N N+F GT +K + + Sbjct: 887 AFIQCGAFDSFEENRRQMAESYERIVESVNSSKRSNINGQINLFETVTGT--EKFSYPEL 944 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY----EESVATIRGNNIRLAA 999 + E++ G Y S HPLD + L+ I +E + G + L A Sbjct: 945 EEYTTDELMAMERQTTGLYISSHPLDRFDKQLKGRRIDQISEIQQEESSYCDGAHAELGA 1004 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V S ++ +T+ G+ + + + EA FP Sbjct: 1005 IVASVKRIQTKGGALMAFAELEDRTGSIEAVVFP 1038 >gi|326576004|gb|EGE25927.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis CO72] Length = 1240 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1028 (38%), Positives = 578/1028 (56%), Gaps = 83/1028 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + A I+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIDASIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY----LLDQG 125 IIG ++ + + K S++L + GYQ L+ L+S Y + + G Sbjct: 62 IIGAEVVVGEHSD-------KDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 126 K---QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT S I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTHRSE--IAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYD-RYRESQVVQLA-------------YTHELPLVATNNSLFLSEEDYEAH 228 Y+ ++R + D ++ ES ++Q A + H P TN+ D++AH Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASP-TETNDKNNTVSTDFDAH 231 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + +A+ ++ RPR T Y K++ +M +F+DLP+A+ENT +A RC+ + + Sbjct: 232 EARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITL 291 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRL 341 +LP F + + I E + + GL RL Q + Y +RL Sbjct: 292 GINVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERL 347 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 D+EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + Sbjct: 348 DYELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYD 407 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 408 LLFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDV 467 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD------RLLEIS 515 R P+ DR+ K+IP P + L+ D + L +P + E++ Sbjct: 468 TRVQGKPFGLGDRISKMIPKTPG--IKLEDAFDQEPQLKELLTNPDAPDHELALEIWEMA 525 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +KLEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLG Sbjct: 526 KKLEGLTRNVGKHAGGVLIAPNRISDFSAIYCDGEGH-PVSQYDKDDVEAVGLVKFDFLG 584 Query: 576 LKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMR 629 L+ LT+LQ ++D + AQ +DL +P DD + Y +L T +FQLESSGM+ Sbjct: 585 LRNLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMK 644 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPML 682 + L ++P IED+IA+ +LYRPGP+++ +V + +RK+G +++ HP L+ P L Sbjct: 645 KYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPL 704 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 + T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 705 ESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNID 764 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 765 GGLAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQV 824 Query: 803 KKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK 860 D R F + I+PPSVN F V D + I Y L A+KGVG I+ A D Sbjct: 825 VFLLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDG 884 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGAL----------------DCFGYSRMQLLQS 904 F L DFC+RVD KK+ +R LE+L+ AG DC R L + Sbjct: 885 AFKDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQ 944 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L A +N+ ++F + LE + R EQ LG Y + Sbjct: 945 LPEAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDVYWQPQD-RLRYEQATLGLYLT 1003 Query: 965 GHPLDVYK 972 GHPLD Y+ Sbjct: 1004 GHPLDEYR 1011 >gi|330859615|emb|CBX69955.1| DNA polymerase III subunit alpha [Yersinia enterocolitica W22703] Length = 921 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/802 (43%), Positives = 496/802 (61%), Gaps = 33/802 (4%) Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313 +++ +M +F+D+PEAL N+VEIA+RC+ +++ LP+F + E+ L Sbjct: 1 MRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDM-----STEDFLVE 55 Query: 314 KAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 K+ GLE RL AQ Y +RL+ EL VI +M F GYFLIV +FIQW+K N Sbjct: 56 KSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDN 115 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD V Sbjct: 116 GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLV 175 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + + Sbjct: 176 IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-K 234 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D Sbjct: 235 AFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAE 294 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDD 605 + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +D++ IP DD Sbjct: 295 GNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLDD 354 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + +V N + Sbjct: 355 KKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFID 414 Query: 664 RKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL AD+LRRAMG Sbjct: 415 RKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMG 474 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W Sbjct: 475 KKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 534 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYY 837 +K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V D I Y Sbjct: 535 LKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVY 594 Query: 838 SLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L+ +GA D G Sbjct: 595 GIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLGP 654 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-----SSVR 951 R L+ SL K A K ++F G +D + S N + Sbjct: 655 HRAALMSSLGEALKAADQHAKAEAIGQVDMF----GVLADAPEQVEQSYANVPPWQEQIV 710 Query: 952 FENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + E+ LG Y +GHP+ Y K I R G ++ T RG A +V++ + T+ Sbjct: 711 LDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARIMVTK 770 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 +G+RIG T + + E F Sbjct: 771 RGNRIGICTLDDRSGRLEVMLF 792 >gi|297529096|ref|YP_003670371.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3] gi|297252348|gb|ADI25794.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3] Length = 1092 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1032 (38%), Positives = 592/1032 (57%), Gaps = 65/1032 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL V S YSL + A ++ + + A+A+TD N L+ A+ F ++ GI+PI Sbjct: 2 FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG D+ + G+ FP +VLL + EGY+ L+E +S M + + K Sbjct: 62 IGVTADVALS--------GEEAFP----LVLLAANEEGYRHLLE-ISTMMQMGETKHMEE 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 L L + G+I +T GS G ++ + A++ L + +LF RLYV +QR Sbjct: 109 AALVRL----SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 164 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKDRPRV 248 E+ ++QLA +P+VATN+ ++ D A L A+ +++ + D R Sbjct: 165 QTRAPYEAGLLQLAEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLADIEDDNGR- 223 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 YL EM F+DLPEALEN++ IA +C ++ LP + + + + Sbjct: 224 ----YLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGET----AD 275 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR RL++ +A+ + D Y +RL EL+VI + FS YFLIVAD + + Sbjct: 276 SYLR---------RLSEQGLARRVPSADERYWRRLSHELDVIQSLHFSDYFLIVADVLAY 326 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++ I GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF R Sbjct: 327 ARRRGILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDGR 386 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVIRYV +KYG +RVAQIITFG+ AKAALR+ +AL +P + +++ L+P+ Sbjct: 387 REEVIRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSK--QS 444 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L Q A+ + FR A A P L ++QKLEGL RH S HAAG++I PL + VP+ Sbjct: 445 VTLRQWHAESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPL 504 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604 + + P+TQ+ M +E GL+K DFLGL+TLTL+++ + + Q G D+ +P + Sbjct: 505 -QPSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLN 563 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY LL T GIFQLESSGM++ L ++P ED++A+ +LYRPGP+ I VY R Sbjct: 564 DEKTYALLGAGDTNGIFQLESSGMKRILAELRPSEFEDVVAVNALYRPGPMQMIPVYIRR 623 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K G+E + IHP + P+L T GV+IYQEQ+MQIA L+G+SL +ADVLRRA+ KK K Sbjct: 624 KRGEEPVEYIHPDLAPILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKAL 683 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + KQ++ F++G + NG K IA +++ +A+FADYGFN+SHA +YA++SY A+MK HYP Sbjct: 684 LAKQRQAFVAGCAANGYPKEIAEELYQHIARFADYGFNRSHAVSYALLSYAMAYMKAHYP 743 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 + F A +T + EK + +A + I ++ PSVN V + I LA +K Sbjct: 744 LCFYAVMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSSVEGSAIRLGLAMVKQ 803 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG+ + E A+ PF DF +R+ K L R LE+L+ GA D FG R LL S Sbjct: 804 VGSAAKLIVEERKANGPFADFFDFAARLLPKGLGRPALEALISVGAFDEFGADRASLLAS 863 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGF 961 +D ++AQWV+ A E G S K K++ +S S R E LGF Sbjct: 864 IDIAIEHAQWVQ-----------ALEAGGLSLK---PKYAAAHSWPLSERRRREAEFLGF 909 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HP V +P+L+ G VA ++G + + VV ++ +T++G + + T Sbjct: 910 AVTPHPAAVCRPLLQAAGAV----CVADVQGPSTVVGGAVVRIRKTRTKQGEEMAFFTVG 965 Query: 1022 EPAKEYEANFFP 1033 + + E EA FP Sbjct: 966 DESGELEAVAFP 977 >gi|28212073|ref|NP_783017.1| DNA polymerase III DnaE [Clostridium tetani E88] gi|28204516|gb|AAO36954.1| DNA polymerase III, alpha chain [Clostridium tetani E88] Length = 1166 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1064 (36%), Positives = 610/1064 (57%), Gaps = 62/1064 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K +++ L H+ YSLL+ + + ++ K+ +IAITD ++ +EF ++A G Sbjct: 7 KEYNWISLHQHTEYSLLDSSAKITELIKKVKELGMKSIAITDHGVMYGCVEFYKEAIKEG 66 Query: 67 IQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 I+PIIGC++ + + ++K + + +VLLV GY+ L+E+VS+ + D Sbjct: 67 IKPIIGCEIYVVPKSMHIKRVDNDNAIY----HLVLLVKNDVGYRNLMEIVSKASI-DGF 121 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L+E +EGLI + G + + + AEK L +K++F + Y+ Sbjct: 122 YYKPRVDHEFLRE-HSEGLIASSACLGGEVQSYILKGNIEKAEKAALNYKEIFKEGFYLE 180 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ + ++++ ++ +PLVATN+ ++ +ED AHD+L+ V V +++ Sbjct: 181 LQDHGMKEQVKVNNELIAMSKRLSIPLVATNDVHYIEKEDSRAHDILLCVQTGKTVEEEN 240 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDD 302 R R T + YLK+ EM ++FS +PEALENT++IA +C+F H LP F + + D+ Sbjct: 241 RMRYPTGEFYLKSPEEMYNLFSHVPEALENTIKIAEQCNFQYNFHESKLPTFPLPDKVDN 300 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIV 360 + LR GL+ + Y D + RL++ELNVI M + YFLIV Sbjct: 301 Y-----DYLRELCYEGLKEK---------YDTVDEKLKNRLEYELNVIKEMGYVDYFLIV 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++AK+ +I GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+R+SMPD D Sbjct: 347 WDFIRFAKEKDIMTGPGRGSGAGSIVAYTLGITKIDPIKYGLIFERFLNPERISMPDIDS 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC +RR EVI YV KYG V+QI TFG++ A+A +RDVGRA+ Y +VD++ K+IP Sbjct: 407 DFCYERRQEVIDYVVEKYGENNVSQIATFGTMAARACIRDVGRAMNYSYVEVDKIAKMIP 466 Query: 481 NDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +++ +A+ + + D ++ L+ I+ KLEGL RH STHAAG+VI PL Sbjct: 467 TVPGTSITIDKALQLNPELKAIYENDHRINDLINIAIKLEGLPRHTSTHAAGVVIASHPL 526 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 VP+ ++ + VTQF M +E+ GL+K DFLGL+TLT+++ ++ + + RG+ +DL Sbjct: 527 VNYVPLQKNEGN--IVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVAMIKENRGIDIDL 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + FDD E Y+++ T+G+FQLES GM + ++PD +EDIIA +SLYRPGP+ I Sbjct: 585 DKLDFDDKEVYNMIGEGKTVGVFQLESDGMTSFMRELKPDSLEDIIAGISLYRPGPMAEI 644 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y + K EKI + P ++ +L T G ++YQEQVM++ + L+GYS+ +D++RRAM Sbjct: 645 PKYISNKKNPEKIEYLTPRLEDILSVTYGCMVYQEQVMEVVRKLAGYSMGRSDLVRRAMS 704 Query: 719 KKIKEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 KK + M+++++ F + G +NGI + I IF+ + FA Y FNKSHA Sbjct: 705 KKKHDVMEEERKNFVYGIIDESGNIEVPGCVRNGIDEKIGNKIFDSMLDFASYAFNKSHA 764 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYAV+++QT ++ +YP E +AA + M N EK+ + + A++ ++++PP+VN Sbjct: 765 AAYAVVAFQTGYLMRYYPTECIAAMLNSVMGNSEKVAYYTRYAKEEGMEVLPPNVNESYG 824 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885 F V NRI + LAAIK VG +I+EA K F +LEDFCS+VD +N+R +ESL Sbjct: 825 KFTVKGNRIRFGLAAIKNVGLNAIENIVEARGKKGTFANLEDFCSKVDLSCINKRAMESL 884 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKF 943 + AGA D F R ++L + + ++ N+F + + + +F Sbjct: 885 IKAGAFDNFQIFRSRMLAVHEKVLDSINNDKRKNIQGQVNLFEELEESSLEIQYPNINEF 944 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYK------------PILRKMGIKG--YEESVAT 989 +N E+ + G Y SGHPLD YK I+ G++G E Sbjct: 945 DKKNI---LSMEKEMTGLYLSGHPLDEYKNDFKNKVSINISDIVSDKGLEGDLIEGERKV 1001 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ + +K TR + ++ + E FP Sbjct: 1002 KDGEKVIIGGIITNVNKKATRSNEMMAFIEVEDLYGTIEVIIFP 1045 >gi|253795644|ref|YP_003038740.1| DNA polymerase III, alpha subunit [Candidatus Hodgkinia cicadicola Dsem] gi|253739952|gb|ACT34287.1| DNA polymerase III, alpha subunit [Candidatus Hodgkinia cicadicola Dsem] Length = 995 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/918 (40%), Positives = 545/918 (59%), Gaps = 38/918 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV+L+V S+YS+L+ LS++ I A QPA+A+TDT+ L ALEF K AAG++PI Sbjct: 7 FVNLKVRSTYSVLDSTLSVDRIAQLAAERGQPAVALTDTS-LHGALEFCVKCDAAGVKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+L +D Q + P P + + L V + +GY L++LV+ + G + + Sbjct: 66 VGCKLLVDCQHAV-----ASAP-PLL--VTLAVKSEKGYANLLKLVNNS---EVGARHHK 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L+ L +GL+ + G + G + + + + A + + +QR Sbjct: 115 ITLAALAA-SAQGLLAIAGEAGGMVWQLYKKLGFEGASTAFALLQDSMEGSVCAEVQRGA 173 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 E VV+ A L LVATN +LF + D+E + VL A+ S +D + Sbjct: 174 VVWPEYEQAVVEAAGALSLMLVATNETLFETRADFEVYKVLRAI------SSRDEVGASE 227 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 ++ K+ ++M+S F+D+P+AL T +++ C F LQ A LP F + E Sbjct: 228 HNFFKSYADMLSRFADMPKALAATAKVSALCEFRLQARAVTLPAF-----SGAVRREARA 282 Query: 311 LRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L KAV LE + + G K + Y +RL +EL VI R +SGYFLIV+DF WAK Sbjct: 283 LYTKAVRALEHQFYKVGKANKPW----YHRRLLWELGVITRASYSGYFLIVSDFTLWAKA 338 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +N+ VGPGRGS AGS+ AY+L +T++DP+ LLFERFLN DR +PD D+DFC R++ Sbjct: 339 HNVYVGPGRGSAAGSLVAYSLGVTNVDPIAHGLLFERFLNADRAGLPDIDVDFCHQGREQ 398 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 V+RY Q KYG V QI TFG+LQ +AA++DV R L++P+ + LCK +P S+ Sbjct: 399 VVRYAQFKYGELCVGQISTFGTLQVRAAIKDVSRCLEVPFETANALCKAVPTYGRGLESV 458 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 A + A L + +L+ +++KL G+YR STHAAG+VI + L VP D Sbjct: 459 YAALARTALVPAEL----LAKLMAVTEKLIGVYRLVSTHAAGLVISNSQLRDSVPTAWDE 514 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHET 608 + + V +++M W+E AGL KFD LGLKTL + + L +A R V++ L F + Sbjct: 515 ANRVSVVRYSMNWVESAGLPKFDLLGLKTLAAVDEVLTQLMASR---VNVGLECFGGEKA 571 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + L+ LG FQLES GM++ ++ + P + D+ AL++LYRPGP+ +I Y++ K+G Sbjct: 572 FKLICGGRVLGTFQLESRGMKKHIKHVLPSSLNDLAALIALYRPGPMKHIKQYSDTKHGS 631 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 VS+H +D +L ET GV+IYQEQVM IAQ L+GYSLSEADVLR+AM KK EM Q Sbjct: 632 AARVSLHQAVDHLLDETYGVVIYQEQVMLIAQKLAGYSLSEADVLRKAMAKKDMREMLVQ 691 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 ++RF+ GA NG+ + +A ++F+ LA+FADYGFNKSHA AY+ ++Y TA +K +P+EF Sbjct: 692 RQRFVGGAVANGVKRALAASLFDGLARFADYGFNKSHALAYSALAYITAHLKASFPLEFY 751 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 AA+M++E+ K+ +A I+ + PSV P + FK G+ I++ L+AIKG+G Sbjct: 752 AANMSVEIAEQAKMSSLYYEAVSSGIKFVAPSVQAPFLKFKAGNGFIHFPLSAIKGIGEP 811 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 I A +PF L DFC RV + +RVL+SL+ AGA+DCFG SR L+ SLD + Sbjct: 812 VVASIAAARGSQPFADLTDFCVRVSPRAATKRVLKSLIAAGAMDCFGASRRALMASLDAM 871 Query: 909 QKYAQWVEKNRTNKHENI 926 + A+ +K R + ++ Sbjct: 872 ARCAK-SKKGRVDASSDV 888 >gi|282882675|ref|ZP_06291285.1| DNA polymerase III subunit alpha [Peptoniphilus lacrimalis 315-B] gi|281297488|gb|EFA89974.1| DNA polymerase III subunit alpha [Peptoniphilus lacrimalis 315-B] Length = 1145 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1050 (36%), Positives = 608/1050 (57%), Gaps = 55/1050 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F+HL VHS YSLL+ + + I + A+A+TD N++ A++F + G++P Sbjct: 3 NFIHLHVHSEYSLLDASTKIEEIPVRAKELGMKAVALTDHGNMYGAIDFYKACKKVGVKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + Q +L + ++ + +VLL +G + L+++VS + +D Sbjct: 63 IIGCEIYVS-QKSLYLKDRTNERY----HLVLLAENNQGLKNLMKIVS-IAFVDGYYYKP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L L++ ++G+I + +G + R A+K L ++ +FG D ++ LQ Sbjct: 117 RVDLDVLKKY-SKGIIATSACLAGEVQRLIQRRDYDGAKKAALRYRDIFGKDNFFLELQD 175 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R ++ +L+ + L +N+ +L +ED +A DVL+ + + + + R + Sbjct: 176 HGIPEQKRVNRELNRLSKETGISLSCSNDVHYLKKEDAKATDVLLCIQTGSKIKDEKRMK 235 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + YLK+ EM +IFSD +A+ NT IA RC+ + LP F + Sbjct: 236 FPTEEFYLKSAEEMENIFSDNLDAINNTGIIADRCNVDFEFGHYHLPEF------KVPSG 289 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFI 364 NE + LE +LA+ + K Y D + R + E I +M F YFLIV DFI Sbjct: 290 YTNE------SYLE-KLAKEGLNKRYKVIDKKIKDRFNMEFQTITQMGFVDYFLIVWDFI 342 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +AKKNNI VGPGRGS AGS+ +Y L I DIDPL+F LLFERFLN +R+SMPD DIDFC Sbjct: 343 NYAKKNNIQVGPGRGSAAGSIISYGLGIIDIDPLKFDLLFERFLNKERVSMPDIDIDFCY 402 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EVI YV KYG ERVAQI+TFG++Q++ A+RDVGR L + YS+VD + K +P+ A Sbjct: 403 ERREEVIDYVCEKYGDERVAQIVTFGTMQSRQAIRDVGRVLDIAYSRVDYIAKQVPH--A 460 Query: 485 HPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++L D S F+E D L++I++++EGL RH STHAAG+VI PL+ V Sbjct: 461 LKMTLDKALDISESFKELYEKDKEARNLIDIAKRIEGLPRHTSTHAAGVVISKNPLTDYV 520 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602 P+ R+ + TQFNM +E+ GL+K DFLGL+TLT+L+ ++ + VK+D S Sbjct: 521 PLTRN--DQIIATQFNMIQLEELGLLKMDFLGLRTLTVLRDAISLVYDNYKVKIDFSEFT 578 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD + + TLG+FQ ESSGMR L+ ++PD D++A +L+RPGP+ I + Sbjct: 579 YDDEKVLKMFAKAETLGVFQFESSGMRLFLKELKPDAFSDLVAANALFRPGPMKQIPKFI 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K+ K KI IHP+++P+LK+T G I+YQEQVMQI Q++ GYSL AD++RRA+ KK Sbjct: 639 ESKHDKSKISYIHPILEPILKDTYGCIVYQEQVMQIVQIVGGYSLGRADIVRRAISKKKM 698 Query: 723 EEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 M+++++ FI GA KNG+ + A I++L+ FADY FNKSH+ AY+VI+Y Sbjct: 699 AVMEEERKNFIYGNEKENVCGAIKNGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVIAY 758 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 ++AW+K +YP EF+AA ++ +++++ + ++ ++ I ++PP+VN +F V + Sbjct: 759 RSAWIKYYYPREFMAAQISTYTSDIKQVSLYIEELKRLGIGLLPPNVNYSQKNFTVEGKK 818 Query: 835 IYYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCS---RVDSKKLNRRVLESLVFAG 889 I + L A+K VG I++A DK F SL DF +V ++ LN++ LESL+ G Sbjct: 819 IRFGLKAVKNVGENLIEAIVQAR-DKLGNFTSLWDFVDKVQKVSAQVLNKKALESLIRCG 877 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 ALD F +R Q L + + + Q +N +F + + D L+ FS+ + Sbjct: 878 ALDDFDGNRAQYLAVYEKVMENNQKSIRNNIRGQVTLFGNLNKS-EDLPNLKDFSLRD-- 934 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE------SVATIRGNNIRLAAMVVS 1003 + E+ V+G Y SGHPLD Y+P L E S + I+ +IR+A ++ + Sbjct: 935 -KLNMEKEVIGIYVSGHPLDDYRPALISFSNTNTGEIFESYNSSSLIQNKDIRIAGLLKN 993 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K+ T+ + + + + E FP Sbjct: 994 KKTMITKTNKVMAFASLEDLFGTIELIIFP 1023 >gi|228993333|ref|ZP_04153249.1| DNA polymerase III subunit alpha [Bacillus pseudomycoides DSM 12442] gi|228766401|gb|EEM15044.1| DNA polymerase III subunit alpha [Bacillus pseudomycoides DSM 12442] Length = 1096 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/1018 (36%), Positives = 595/1018 (58%), Gaps = 52/1018 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+ A ++ ++ + ++AITD N ++ + F + G++PIIG + Sbjct: 1 MLKSACKIDELVSRAKELGFSSLAITDENVMYGVIPFYKACKKNGVRPIIGLTASV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + + +P +VLL GYQ L+++ S + K I WL Sbjct: 57 ---FSEEEEQSYP----LVLLAENEIGYQNLLKISSTI----MTKSKDGIPKKWLSHYA- 104 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQV 200 +GLI ++ G G I++ ++AE+ ++ +FG Y++LQ H D + + ++ Sbjct: 105 KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMFGS-FYMSLQHHAIQDELFLQEKL 163 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSE 259 Q A +P+VATN+ ++++ D + L++V T ++ DRPR+ D +YLK+ +E Sbjct: 164 PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M ++FS EAL+NTV IA RC + H LP+F NE + + Sbjct: 224 MEALFSHAEEALQNTVRIAERCHVEIPFHVNQLPKF---------PVPSNETSDAYLR-- 272 Query: 320 EVRLAQGAIAKGYHA-QD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 R+ + + K Y A QD +R+RL+ EL VI+RM FS YFLIV DF+++ ++ I GPG Sbjct: 273 --RICEDGLNKRYGAVQDVHRKRLNHELEVISRMGFSDYFLIVWDFMKYGHEHGILTGPG 330 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF RRDE+IRYV++K Sbjct: 331 RGSAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDK 390 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497 YG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + +A + Sbjct: 391 YGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLK-EAYEESGS 449 Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557 RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + ++ +D+ VTQ Sbjct: 450 LREFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI-QEGHNDVYVTQ 508 Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKG 616 + + +E+ GL+K DFLGL+ LTLL+ L F+ + G ++D+ +P D +T+ LL Sbjct: 509 YPAEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGD 568 Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676 T G+FQLES GMR L ++P+ EDI+A+ +LYRPGP++ I + K+GK +I +H Sbjct: 569 TTGVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKRQIHYLHS 628 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736 + P+LK T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK +E +D++++ F+ G Sbjct: 629 DLKPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGC 688 Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796 +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++ + Sbjct: 689 LRNGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAI 748 Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856 N +KI ++ ++ ++ ++PPS++ +F++ N I YSL +I+ +G T ++E Sbjct: 749 GNEDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEE 808 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 PF L +FC R+ +K + R LE+ V+AG D F SR L S+ +YA Sbjct: 809 RERNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYAS--- 865 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYFSGHPLDVYKPIL 975 A E G S ++ E S + + NE+ LGFY S +P Y ++ Sbjct: 866 ----------LARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYPTAQYAKLV 915 Query: 976 RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +++ I +++ R N R V + +T+K ++ +VTF + E EA FP Sbjct: 916 KELEIPSLAQAMRQKR-NVQRAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972 >gi|258645443|ref|ZP_05732912.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470] gi|260402794|gb|EEW96341.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470] Length = 1145 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1046 (36%), Positives = 584/1046 (55%), Gaps = 56/1046 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YSL +G + ++ + Q AIAITD ++ A+ ++ GI+P Sbjct: 3 SFVHLHSHTEYSLFDGTCRIKELVSYVKELGQTAIAITDHGVMYGAVYLYKECLKQGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY---LLDQGK 126 IIGC++ + K + ++LL GY+ +I++ S+ + + + Sbjct: 63 IIGCEIYVTAGSRFIKDADKKE---KLAHLILLAENNTGYKNIIKICSKSWTEGYYHKPR 119 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 + L + EG+I L+ G + +A + A K + + FG D ++ Sbjct: 120 ADHDLLLKY-----HEGVIALSACIGGELPQAVLKGDLEQARKIIRFYMDTFGKDNYFIE 174 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H + + +LA + L LVATN+ + ++D + ++ + ++ + Sbjct: 175 LQNHGLPEEAAVRPALAELAKEYGLGLVATNDFHYTRKKDAGSQEIKLCISTGNTMDDPG 234 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + Y K+ EM ++ + P A+ENT IA RC+ LP F E Sbjct: 235 RFRFANEEFYCKSGEEMKALLGNFPGAIENTARIAERCNVTFTFGKHKLPSFTVPE---- 290 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + A RL + A+ + Y + ++RLD+EL VI +M F+ YFLIV Sbjct: 291 ---------GETAATYLRRLCEEALPERYPNYGNKEKERLDYELGVINQMGFADYFLIVM 341 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQ+AK + IP+GPGRGS AGS+ +Y L IT++DPLRF LLFERFLNP+R+SMPD D D Sbjct: 342 DFIQYAKTHGIPIGPGRGSAAGSIVSYLLHITEVDPLRFHLLFERFLNPERISMPDIDTD 401 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 C R +VI Y+ KYG + VAQIITFG+L A+A +RDVGR L MP +VDR+ K+IP+ Sbjct: 402 LCYRGRGQVIEYLAKKYGEDHVAQIITFGTLAARAVIRDVGRVLSMPLREVDRIAKMIPS 461 Query: 482 DPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P V+L+ + S+ F E +D ++ RL++ LEGL R++ THAAG+VI P+ Sbjct: 462 GPG--VTLRTTLERSKEFAELYASDSNIHRLIDHCLDLEGLSRNSGTHAAGVVICSEPVE 519 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599 + VP+ + + + TQ+ E+ GL+K D LGL+ LT++ +L+ + RG+ +D+ Sbjct: 520 EYVPI-QLTQDNFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDALEMIKTNRGIALDIE 578 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P D T +L + T+G+FQ ESSG L ++P+C ED+I +V+LYRPGP+ + + Sbjct: 579 ALPHVDELTCKMLRSGDTVGVFQSESSGFTSLLMQLEPECFEDLIPMVALYRPGPLGSGM 638 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 + NRK+GK + HP ++ +LKET G+I+YQEQVMQIA ++ G+SL +AD+LRRAM Sbjct: 639 AEDFINRKHGKTAVDYPHPSLETILKETYGIILYQEQVMQIASVMGGFSLGQADLLRRAM 698 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 G K E + Q++ F+ GA+ IS+ IA +F+L+ FA YGFNKSH+ Y I++QTA Sbjct: 699 GHKEPEILQAQRKLFVKGAAVQKISEEIANRVFDLMVHFAGYGFNKSHSVCYGWIAWQTA 758 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HY EF+AA MT + K+ ++ D R+ ++I P VN F V + I + Sbjct: 759 YLKAHYRPEFMAAMMTCYNGDRNKVSRYISDTRRAGVKIAAPDVNRSEAGFSVNGDTILF 818 Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LA ++ VG I+ A D F S+ D R+DSK LN R ESL+ GA+D FGY Sbjct: 819 GLAGVQNVGEGIVNSIIGARKKDGAFKSISDLLERIDSKGLNSRACESLIRCGAMDSFGY 878 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R QL++ L A +R + ++F E + I +++ + ++E+ Sbjct: 879 NRRQLIEVLPQALNNASVTRSDRESGQLSLFGGE--IKAKTIVYPDLPDMSAAEKIDSER 936 Query: 957 RVLGFYFSGHPLDVYK-------PI--LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 ++LGFY SGHPLD YK PI L G+K Y+ + ++ G R+ +M Sbjct: 937 KLLGFYVSGHPLDSYKQQMKYCSPIYSLLSDGMK-YDGKMVSVGGIITRVKSMT------ 989 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+KG+ +G+V+ + EA FP Sbjct: 990 -TKKGAPMGYVSLEDYEGAMEAVIFP 1014 >gi|160878493|ref|YP_001557461.1| DNA polymerase III DnaE [Clostridium phytofermentans ISDg] gi|160427159|gb|ABX40722.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg] Length = 1186 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/1073 (35%), Positives = 604/1073 (56%), Gaps = 58/1073 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ +SLL+G+ + + + A+AITD ++ ++F + A GI+P Sbjct: 2 SFTHLHVHTEFSLLDGSGKIKEMAAQAKKLGMDALAITDHGVMYGVIDFYRACLAEGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + N + +G +VLL GY LI++VSR + + Sbjct: 62 IIGCEVYV--APNSRFDKEGSASEERYHHLVLLAENDIGYHNLIKIVSRGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+E +EG+I L+ +G + N + A+ L +++FG ++ LQ Sbjct: 119 RVDHELLKEY-SEGIIALSACLAGEVAVMLRRNFFEEAKASALKLQEIFGAGNFFLELQD 177 Query: 189 HRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H GY + +++++ +PLVATN+ + + D AHD+L+ + V+ +DR Sbjct: 178 H-GYPEQKSVNQGLLRISEETNIPLVATNDIHYTYDTDETAHDILLCIQTQKKVTDEDRM 236 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---------- 295 R Y+K+ EM +F +AL+NT EIA+RC+ ++ LP++ Sbjct: 237 RYAGGQFYMKSPEEMRELFPYALQALQNTEEIAKRCNVTIEFGHYKLPKYDVPAPYTVSP 296 Query: 296 ----IEKECDDIQKEEENELRNKAVAGLEV--RLAQGAIAKGYH--AQDYRQRLDFELNV 347 + E D +N N + E +L + + + Y + + RL++EL Sbjct: 297 GSGSTDDEGD--ISASQNISTNTDILAREYLRKLCEEGLVRRYKDPSTELWDRLNYELET 354 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I M F YFLIV DFI++AK N+I VGPGRGS AGSV +Y L IT+IDP+++SLLFERF Sbjct: 355 IENMGFVDYFLIVWDFIKYAKDNDIIVGPGRGSAAGSVVSYCLEITNIDPIKYSLLFERF 414 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R++MPD DIDFC +RR EVI YV +KYG +RV QI+TFG++ A+A +RDVGRAL M Sbjct: 415 LNPERLTMPDIDIDFCFERRQEVIDYVVSKYGKDRVVQIVTFGTMAARAVIRDVGRALDM 474 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 PY+ VD + K+IP + + +A+ + ++ +DP V L+++S++LEGL RH S Sbjct: 475 PYASVDVVAKMIPTELGITIE-KALNINPDLKKLYESDPEVMHLIDMSKRLEGLPRHTSM 533 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAG+VI + P + VP+ R D TQF M +E+ GL+K DFLGL+TLT++Q ++ Sbjct: 534 HAAGVVISNAPADEYVPLSRS-SDDSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVL 592 Query: 588 FLAQRGVK--------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 + Q + +++ I ++D + L+++ T GIFQLESSGM+ ++ ++P Sbjct: 593 LVNQAKARLGETEENFLNIDEIDYNDSKVLDLISSAKTEGIFQLESSGMKSFMKELKPQN 652 Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 +EDIIA +SLYRPGP+D I Y KN ++ I ++P+L T G I+YQEQVMQI Sbjct: 653 LEDIIAGISLYRPGPMDFIPKYIQGKNNQKSIQYECKELEPILSPTYGCIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFE 751 + L+GYS +D++RRAM KK M+K+++ F + G GI + +A +I++ Sbjct: 713 RELAGYSFGRSDLVRRAMSKKKASVMEKERQSFVYGNVEEGVPGCISKGIPEAVANHIYD 772 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + FA Y FNKSHAAAYAV+SYQTA++K +YPVEF+AA MT +DN K+ ++ RQ Sbjct: 773 EMTDFAKYAFNKSHAAAYAVVSYQTAYLKCYYPVEFMAALMTSVIDNPSKVAEYIYTCRQ 832 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCS 870 I+++PP +N F V I Y L+AIKG+G ++E + P+ +L+DF S Sbjct: 833 MGIKLLPPDINDGYATFTVSGENIRYGLSAIKGLGRPVIDALVIEREENGPYLNLKDFAS 892 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--A 928 R+ K++N+R +ES + +GA D +R QL+ + +K ++F Sbjct: 893 RLSGKEVNKRTIESFIKSGAFDSMPGTRKQLMHVYVGVLDGVSQEKKRAMTGQMSLFDLD 952 Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG-----Y 983 + +++I + + E+ VLG Y SGHPL+ Y+ +L++ Sbjct: 953 GDAKVMNEEIIFPEVGEYSKEELLAFEKEVLGIYVSGHPLEAYELLLKRNATANTADFIV 1012 Query: 984 EESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 EE T++ G+ + + M+ S+ K TR + + ++T + E FP Sbjct: 1013 EEETNTVKVADGDTVTVGGMITSRTLKTTRTNAVMAFITLEDMFGTMEVIIFP 1065 >gi|315124217|ref|YP_004066221.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017939|gb|ADT66032.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 961 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/959 (39%), Positives = 570/959 (59%), Gaps = 48/959 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F ++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGVIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + F + L GYQ L+ L S+ Y+ +G Sbjct: 64 IGMEAYLHNHDELD-DKSSRQRF----HLCLYAKNEIGYQNLMYLSSQSYI--KGLYYYP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI--------DRAFFFNSS--QVAEKRLLTFKKLFGD 180 L E +EGLI + G + +R F + + A++ L +KK+F D Sbjct: 117 RINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH G R + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P P F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296 Query: 296 --IEKECDDIQKEEENELR--NKAVA-------GLEVRLAQGAIAKGYHAQDYRQRLDFE 344 K+ + I EE E N + GLE RL I + H ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK--FIDESKH-EEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYR 523 M D L KL+P + ++L A + + + +E P + E ++ LEGL R Sbjct: 474 CDMSIQDADELAKLVPEELK--ITLDAAYEKEPKIKEFIDRHPKGPEVWEYARALEGLNR 531 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT+ Sbjct: 532 NAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTV 591 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 592 INNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERF 651 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ ++ + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 652 EDIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQI 711 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Sbjct: 712 VQIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAG 771 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++P Sbjct: 772 YGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLP 831 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 PS+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 832 PSINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDP 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 892 TKINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELT 950 >gi|194017300|ref|ZP_03055912.1| DNA polymerase III subunit alpha [Bacillus pumilus ATCC 7061] gi|194011168|gb|EDW20738.1| DNA polymerase III subunit alpha [Bacillus pumilus ATCC 7061] Length = 1111 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/1031 (36%), Positives = 589/1031 (57%), Gaps = 49/1031 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+VHLQVHS YSLL A + ++ K A+A+TD + ++ +EF ++ GI+P Sbjct: 2 SYVHLQVHSGYSLLSSAAKVKELVLKAKELGCKALALTDDHVMYGTVEFYKECKKHGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG + + + Q +P +VLL EGYQ LI++ S + + K Sbjct: 62 VIGLTASVFIDE------QETEAYP----LVLLAKNNEGYQNLIKISSVL----KSKSKA 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 + WL+ GLI +T G SG I+ + + A K +FG+ +Y+ LQ Sbjct: 108 GLKEKWLKSY-HRGLIAMTPGVSGYIETLLQHDQLEEAHDAAKQLKHIFGEGHVYIALQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + D ++ ++ + ++PLVAT + +++ ED A+ L A+ + + + R Sbjct: 167 FQQ-DESLAGKLRDVSKSADIPLVATGDVHYINLEDKTAYMCLKAIKAGQQLPEVEEDRA 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + + + EM ++ E L TVEIA RC L + LP + + Q + Sbjct: 226 --EKHFRTFEEMKEWYTQDTELLSRTVEIADRCEVDLNLGQTKLPSYPTPD----QSTAD 279 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR V G++ R A Y +RL++EL++I +M FS YFLIV DF+++A Sbjct: 280 QFLRKVCVEGMKQRKIASNDA-------YVKRLEYELSIIQKMNFSDYFLIVWDFMKYAH 332 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 I GPGRGS AGS+ AY L ITD+DPLR LLFERFLNP+R+SMPD DIDF RRD Sbjct: 333 DQGIVTGPGRGSAAGSLVAYVLFITDVDPLRHGLLFERFLNPERISMPDIDIDFPDTRRD 392 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+I YV++KYG VAQI+TFG+L AKAALRDVGR + + DRL KLIP+ P + Sbjct: 393 EIISYVKDKYGDMHVAQIVTFGTLAAKAALRDVGRVMGIDSKAADRLAKLIPSKPGTTLK 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+A + + ++ + + K+EGL RH STHAAG+V+ + PL+++VP+ +D Sbjct: 453 -EALAASPELKAMLQQSEELRQVFQTALKVEGLPRHTSTHAAGVVLSEEPLTEIVPI-QD 510 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 + +TQ+ M ++E GL+K DFLGL+ LTL++ + + Q V ++ S I ++D + Sbjct: 511 GHDGVYLTQYAMNYLEDLGLLKMDFLGLRNLTLIESIKNQIERQENVHINFSDISYEDQK 570 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL+ T GIFQLES GMRQ L ++P +EDI+A+ +LYRPGP++NI ++ +RK+G Sbjct: 571 TFELLSAGDTTGIFQLESQGMRQVLRRLKPSSLEDIVAVNALYRPGPMENIPLFIDRKHG 630 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + K+ HP + +LK+T GVI+YQEQ+M IA ++G+ L EAD+LRRA+ KK K+ +D+ Sbjct: 631 RVKVSYPHPDLYDILKDTYGVIVYQEQIMLIAAKMAGFQLGEADLLRRAVSKKDKKVLDE 690 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ G K IA ++++L+ KFA+YGFN+SHA AY++I +Q A++K HYP+ F Sbjct: 691 ERSHFVEGCLKKEYPVNIANDVYDLIVKFANYGFNRSHAVAYSMIGFQLAYLKAHYPLYF 750 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + +T + N +K+ ++ +A++ I ++ PS+N F V I YSL AIK VG Sbjct: 751 MCGLLTSVIGNEDKVAQYFYEAKEKGISVLKPSINKSEFPFTVEKGEIRYSLRAIKNVGV 810 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + I A +KPF+ L DFC+RV +K +NR+ +E+L+F+GA+D +R LL S+D Sbjct: 811 SAVKDIYRARQEKPFEDLFDFCARVSAKSVNRKTIEALIFSGAMDELYPNRASLLASIDI 870 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + ++ N + + TFS K + + E+ LG Y S HP Sbjct: 871 ALDHVSFL-----NPDDQLDFLGDTTFSIKPKYAEIEELPLVDLLQFEKEALGLYLSNHP 925 Query: 968 LDVYKPILRKMGIKGYEESVATIR-----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 + Y+ LR+ G +V IR + + ++ + +T+ G + ++TF + Sbjct: 926 VQAYRDRLRENG------AVDIIRLSSYIKRKVSMGGLLTKVKSIRTKNGQSMAFITFGD 979 Query: 1023 PAKEYEANFFP 1033 E E FP Sbjct: 980 ETGEMEGVVFP 990 >gi|223939595|ref|ZP_03631470.1| DNA polymerase III, alpha subunit [bacterium Ellin514] gi|223891753|gb|EEF58239.1| DNA polymerase III, alpha subunit [bacterium Ellin514] Length = 1224 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1059 (37%), Positives = 599/1059 (56%), Gaps = 63/1059 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA L+ ++DK + P++AITD LF A++F + A GI+PI Sbjct: 6 FVHLHLHTEYSLLDGACRLDRLMDKAHELKFPSLAITDHGVLFGAIDFYKAARDKGIKPI 65 Query: 71 IGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC++ + + K N G+ + +VLL GY+ LI+LV+ +L +G Sbjct: 66 IGCEVYVAPHSRTEKKSANGGRDVYN---HLVLLAKDEIGYKNLIKLVTAAHL--EGYYY 120 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 + EGLI L+G + I A ++ Q A + FK+ G + Y+ LQ Sbjct: 121 KPRIDKEILAANKEGLIALSGCLASEIPEAIMKDNLQKARDGIDWFKQTLGAENFYLELQ 180 Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ + ++ A L LVA+N+ ++ + AHD L+ + T ++ R Sbjct: 181 NHGIPEQAKVNKHLIPWAKEFGLKLVASNDVHYIEKGHSHAHDCLICIGTQTQLADTKRM 240 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAPIL--PRFIEKE- 299 + V YL++ EM + F+++PEA++NT+E+A +C+ ++ +H P+ P +E Sbjct: 241 KYVEEQFYLRSAEEMKARFAEIPEAVQNTLEVAEKCNLEVEFGKLHYPVFDPPEAYTREG 300 Query: 300 ------CDDIQKEEENELRNKA----VAGLE--VRL----AQGAIAK------GYHAQD- 336 + + + +R + V G++ RL Q AK G+H + Sbjct: 301 YLRKLLAEGLHRRYTMHVRAEGQEFIVEGIDDARRLPTYKVQSPDAKVQGNGNGHHVDEP 360 Query: 337 ---------------YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 RL EL VI + F YFLIV DF+++ ++ I RGS Sbjct: 361 ITNLEDPAVKEAVKAVIDRLQMELKVIEKTGFISYFLIVGDFVRYGREQGISC-VARGSA 419 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGS+ Y L I ++DP+R++LLFERFLNP+R++ PD DIDF DRR +VI YV+ KYG+ Sbjct: 420 AGSLVTYLLEIANVDPIRYALLFERFLNPERVNPPDIDIDFADDRRADVIEYVRKKYGNS 479 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501 VAQI+TFG++ AK+ LRDVGR + + Y DRL K+IPN+ + +A+ + A Sbjct: 480 SVAQIVTFGTMGAKSVLRDVGRVMGLGYGDCDRLAKMIPNELKMDLH-KALKQSPDLKAA 538 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 + L++ + LE + R++S HAAG+VIGD+PL L+P+ +D L VTQ+ M Sbjct: 539 YDTEEVTRELIDTAFALEDITRNSSVHAAGVVIGDQPLVNLLPLKQDEEGTL-VTQYAMN 597 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620 + + GL+K DFLGLKTLT+++ + + + A +GV V + +P DD +TY LL TLG+ Sbjct: 598 PVGELGLLKMDFLGLKTLTVIRNTCEMIKATKGVDVPIDNLPLDDKKTYDLLNNARTLGV 657 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQLES GMR Q +E I ALV+LYRPGP+D I + R++G+ KI HPL++ Sbjct: 658 FQLESGGMRDLCRKFQIGSVEHITALVALYRPGPMDLIPEFIKRRHGEVKIEYEHPLLEK 717 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG-ASKN 739 + ET G+++YQEQVMQ AQ L+GY+L AD+LRRAMGKK EEM KQ+E F+ G AS N Sbjct: 718 ICSETYGIMVYQEQVMQAAQYLAGYTLGGADLLRRAMGKKKVEEMQKQRETFVKGAASIN 777 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 I A IF+LL KFA YGFNKSHAAAYA+++YQTA++K +YPVEFL+A MT +M + Sbjct: 778 KIPAAKANQIFDLLEKFAGYGFNKSHAAAYAIVAYQTAYLKANYPVEFLSAMMTNDMADT 837 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEA- 856 K+ +F +AR I+++PP VN V F N I + LAAIKGVG + I++A Sbjct: 838 SKLTEFIAEARSMGIEVLPPDVNESQVAFAPARNGEVIRFGLAAIKGVGEIAVQSILDAR 897 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 A F SL D C RVD + +NR+VLE+L+ +GA D F +R + +D A + Sbjct: 898 KAGGEFTSLGDMCQRVDIRTVNRKVLEALIKSGACDAFKETRSTMYAHIDKALTRAAGII 957 Query: 917 KNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 ++R ++F + DK + K + E+ +LGFY +GHP++ Y P+L Sbjct: 958 QDRQRGQSSMFDMLEENREDKPEVVAKLPEWPEHELLQAEKELLGFYVTGHPINPYVPLL 1017 Query: 976 RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 K + E R+ +V QQ ++K ++ Sbjct: 1018 EKYALTKIAELPKLENRALTRIGGLVSVVQQGVSKKSNK 1056 >gi|33240201|ref|NP_875143.1| DNA polymerase III subunit alpha [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237728|gb|AAP99795.1| DNA polymerase III alpha subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 1168 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1054 (37%), Positives = 613/1054 (58%), Gaps = 48/1054 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L HS YSLL+GA L ++ + PA+A+TD ++ A+E + GI+PI Sbjct: 3 FVPLHNHSDYSLLDGASQLPLMVARAKELGFPALALTDHGVMYGAIELLKLCKKEGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG ++ + + P P +V+L + GY+ L++L + +L + Sbjct: 63 IGNEMYV-------INGSISDPQPKKEKRYHLVILAKNSTGYKNLVKLTTISHLKGMRGR 115 Query: 128 SV--RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + R C+ L + +EGLI+ T G I +A VA++ +K +FG+ Y+ Sbjct: 116 GIFSRACIDKDLLKKYSEGLIISTACLGGEIPQAILRGRLDVAKEVANWYKNVFGEDFYL 175 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H DR + ++A + LVATN++ +L+E D EAHD L+ V +V + Sbjct: 176 EIQDHGSIEDRIVNVAISKIANELNIELVATNDAHYLTENDVEAHDALLCVLTGKLVKDE 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIE 297 R R T YLK+ S+M ++F D + +A++NT+ +A + + +P+F Sbjct: 236 KRLRYTGTEYLKSESQMKNLFVDHLDEEVVTKAIKNTLMVASKVEEYSILGNYKMPKFPV 295 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E + L + +V GL +L +I +Y +RL E+ +I M F YF Sbjct: 296 PEGN----TPIEYLESVSVNGLLEKLKLDSI--DLIDNEYSERLSTEIKIIEEMGFPTYF 349 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+V D+I++A++ +IPVGPGRGS AGS+ AY+L IT+IDP++ LLFERFLNP+R SMPD Sbjct: 350 LVVWDYIKFAREQSIPVGPGRGSAAGSLVAYSLGITNIDPVKNGLLFERFLNPERKSMPD 409 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D DFC +RR+EVI YV YG ++VAQIITF + +KA L+DV R L +PY + D+L K Sbjct: 410 IDTDFCIERRNEVIDYVTRMYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYREADQLAK 469 Query: 478 LIPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 LIP P L A+ + S FR+ DP V + ++++ ++EG + HAAG+V Sbjct: 470 LIPVVRGKPAKLDAMISKNSPSSEFRDKYEKDPLVKKWIDMAIRIEGTNKTFGVHAAGVV 529 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592 I PL +LVP+ ++ + +TQ+ M+ IE GL+K DFLGLK LT+L+++++ + + Sbjct: 530 IASDPLDELVPLQKNNDGQV-ITQYFMEDIESLGLLKMDFLGLKNLTMLERTVNLVEKSI 588 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 G +VDL + +D +TY LL+ GIFQLESSGMRQ + +QP +EDI ++++LYRP Sbjct: 589 GERVDLDELSLEDKKTYELLSRGDLEGIFQLESSGMRQIVRDLQPSSLEDISSILALYRP 648 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+D ++ + NRK+G+E I H + P+L ET G++IYQEQ+M+IAQ L+GYSL +A Sbjct: 649 GPLDAGLIPKFINRKHGREAIDFPHASLAPILGETYGIMIYQEQIMKIAQDLAGYSLGQA 708 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM K + FI GA K G+ IA +F+ + FA+Y FNKSH+ AY Sbjct: 709 DLLRRAMGKKKVSEMQKHRGFFIDGAKKKGVDSKIASELFDQMVLFAEYCFNKSHSTAYG 768 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++YQTA++K HYPV ++AA +T+ + +KI+++ + I++MPP +N+ +DF Sbjct: 769 AVTYQTAYLKAHYPVAYMAALLTVNSSSTDKIQRYISNCNSMGIEVMPPDINSSGIDFTP 828 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 +NRI + L+A++ +G R +++A D F SL D C R+ S LNRR LESL+ G Sbjct: 829 LENRILFGLSAVRNLGDGVIRQLIKARVNDGLFLSLADLCDRIPSNILNRRSLESLIHCG 888 Query: 890 ALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSV 945 ALD F +R QL++ LD I +A ++R + N+F + EK SD + + + Sbjct: 889 ALDAFHPESNRAQLVKDLDLIIDWAGARARDRASGQGNLFDLSSEKEEKSDISSAPQGPI 948 Query: 946 ---ENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIRGNNIRLAA 999 + + + + E+ +LGFY S HPL + +P ++ + + ++ + + + A Sbjct: 949 VKDYHPTEKLKLEKELLGFYLSDHPLKQLSEPAKLIAPISLINLDDQRDK---SKVSVIA 1005 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ + TRKG ++ + + EA FP Sbjct: 1006 MIKEMRIVNTRKGDKMSILQIEDLTGSCEAVVFP 1039 >gi|166032119|ref|ZP_02234948.1| hypothetical protein DORFOR_01822 [Dorea formicigenerans ATCC 27755] gi|166027842|gb|EDR46599.1| hypothetical protein DORFOR_01822 [Dorea formicigenerans ATCC 27755] Length = 1156 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1052 (37%), Positives = 591/1052 (56%), Gaps = 49/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ ++AITD +F ++F + A A GI+P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKECVARVKELGMNSVAITDHGCMFGVIDFYRAARAQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G +VLL EGY L+++VSR Y + Sbjct: 62 ILGCEVYVAPGSRFDKEAVGSGD-DRYYHLVLLAENDEGYHNLMKIVSRGYT-EGYYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L L+E EG+I L+ +G + + L ++++FG ++ LQ Sbjct: 120 RVDLELLREF-HEGIIALSACLAGEVQKNITRGMYSEGRAAALRYEEIFGKGNFFLELQD 178 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +Q +++++ + LVATN+ + ED AHD+L+ + ++ +DR R Sbjct: 179 HGIPEQQTVNQALMRMSQETGIELVATNDIHYTYAEDARAHDILLCIQTGKKLADEDRMR 238 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM +F +ALENT +IA RC ++ LP++ D Sbjct: 239 YEGGQYYIKSEEEMKKLFPYALQALENTQKIADRCDVEIEFGVTKLPKY-----DVPDGL 293 Query: 307 EENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E NK GLE R +QD + RLD+EL+VI +M + YFLIV DFI Sbjct: 294 SSWEYLNKLCYEGLERRYPN-------PSQDLKDRLDYELSVIHKMGYVDYFLIVWDFIH 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ I VGPGRGSGAGS+ AY L IT IDP+++ LLFERFLNP+R+SMPD D+DFC + Sbjct: 347 YARSQKIMVGPGRGSGAGSIVAYCLEITSIDPIKYQLLFERFLNPERVSMPDIDVDFCYE 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG +RV QI+TFG+L A+ +RDVGR + +PY+ VD + KLIP + Sbjct: 407 RRQEVIDYVGRKYGADRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDNIAKLIPKELNI 466 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ S R++ DP V L+++S +LEGL RH S HAAG+VI +P+ + VP+ Sbjct: 467 TLD-KALKTSSELRKSYEEDPQVKELIDMSMRLEGLPRHTSMHAAGVVISQKPVEEYVPL 525 Query: 546 YRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603 + SD V TQF +E+ GL+K DFLGL+TLT+++ + F + G +++++ I F Sbjct: 526 --SLGSDGSVTTQFVATTLEELGLLKMDFLGLRTLTVIRDAEKFASYSSGKEININKINF 583 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD + T T G+FQLES+GM+ ++ ++P +EDIIA +SLYRPGP+D I Y Sbjct: 584 DDKAVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIK 643 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 K E I P ++P+L T G I+YQEQVMQI + L+GY+L +D++RRAM KK + Sbjct: 644 GKEHPELITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKAD 703 Query: 724 EMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 M K+++ F+ G + NGI + A I++ + FA Y FNKSHAAAYAV+SYQ Sbjct: 704 VMAKERQNFVYGNPEEGVPGCIANGIDEKTANKIYDEMTDFAKYAFNKSHAAAYAVVSYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TAW+K +YPVE++AA MT +DN K+ ++ RQ I+I+PP +N F V + I Sbjct: 764 TAWLKYYYPVEYMAALMTSVIDNPGKVAEYIYSCRQMGIKILPPDINHGYSSFSVDNGSI 823 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y LAAIK +G + I+ E A+ F +L+DF R+ K +N+R +E+ + +GA D Sbjct: 824 RYGLAAIKSIGRPVIKEIVAERKANGEFKNLKDFIERMSGKDINKRTIENFIKSGAFDEL 883 Query: 895 GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 G +R Q + Q LD + + + + + + +K F I L S Sbjct: 884 GGTRKQFMVIYVQILDQVNREKKNSMTGQMTLFDIVGEEQKSEFD--IPLPNVGEYEKST 941 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG------YEESVATIR---GNNIRLAAMV 1001 + E+ VLG Y SGHP++ Y+ RK GI ++E + R G + ++ Sbjct: 942 KLAFEKEVLGIYLSGHPMEEYEEQWRK-GISKTTQDFQFDEELGFSRVSDGAAEIIGGII 1000 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 SK K T+ + ++T + E FP Sbjct: 1001 ASKTIKYTKNNKTMCFLTIEDIMGSVEVVVFP 1032 >gi|188996572|ref|YP_001930823.1| DNA polymerase III, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931639|gb|ACD66269.1| DNA polymerase III, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 1165 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1054 (37%), Positives = 598/1054 (56%), Gaps = 48/1054 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +HS YSLL+G + + K A+ +TD N+F A+EF ++ G++P+ Sbjct: 5 FVHLHLHSHYSLLDGMIKPKELAKKAVEYGYKAVGLTDHGNIFGAVEFYEEMRKVGVKPL 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + + +G T + ++L G++ L++L S Y +G Sbjct: 65 IGME-SYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSIAYT--EG-FY 120 Query: 129 VRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + + W L E EGLI T G + + A+K K +FG+ LY +Q Sbjct: 121 YKPRIDWELLEKYHEGLICQTACLKGFVPNLLAQGKYEEAKKYAKRLKDIFGEDLYFEIQ 180 Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV----SQ 242 + ++ ++ +++LA + +V TN+S +L+ ED+ AHDV+ A+ + S+ Sbjct: 181 VNGLEEQNIANEGIIRLAKELGVKVVGTNDSHYLNPEDHTAHDVVKALQMKKTLKELYSE 240 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKE 299 RV H+ + EM F E L+NT+EIA +C+ + + + P+F E Sbjct: 241 GKAFRVKGLHFTR-PEEMYEKFKGYEEYLKNTMEIAEKCNLEIDTAETRGYLFPKFETPE 299 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E R GLE RL ++YR+RLD+E+NVI +M F+ YFLI Sbjct: 300 GMTPAQYFEKLARE----GLEKRLESIKDLTPEKLKEYRERLDYEINVINQMGFAEYFLI 355 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AKKN IPVGPGRGS GS+ AY L IT++DPL+ LLFERFLNPDR+SMPD D Sbjct: 356 VQDFINYAKKNGIPVGPGRGSAGGSLVAYCLRITEVDPLKHGLLFERFLNPDRISMPDID 415 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC +RR++VI YV+ KYG + VAQIITF +++K +RDV R L PY + D++ K+I Sbjct: 416 VDFCMERREKVIDYVKQKYGEDSVAQIITFNFMKSKMVIRDVARTLGFPYQEADKIAKMI 475 Query: 480 PNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 P +L + + F++ D V LL++++KLEG RH HAAGIVI Sbjct: 476 LPGPIQGSTLTIDENLEAHPDFKKLYETDEKVRELLDLARKLEGSARHTGIHAAGIVIAP 535 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595 L + VP+YRD + TQF MK +E+ GL+K DFLGLKTLT L + +R G+ Sbjct: 536 GTLDEYVPVYRDKDGN-RATQFEMKTLEQLGLVKMDFLGLKTLTELDYMKKLIKERHGID 594 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD + +PFDD + LL + T G+FQLES GM+ L ++P +++IIA+++L+RPGP+ Sbjct: 595 VDYNSLPFDDENVFKLLQSGRTTGVFQLESKGMQDLLVRLKPSNLDEIIAILALFRPGPL 654 Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 + +V Y RK+G++ I + +LKET G+I+YQEQ+M ++ +LSG++++EAD L Sbjct: 655 MSGMVDEYIERKHGRKPIEYPFEEVKDILKETYGLIVYQEQIMFMSNILSGFTMAEADTL 714 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 R+A+GKK E M K K+RFI GA + G SK +++ + KFA Y FNKSH+ AYA ++ Sbjct: 715 RKAIGKKNPEVMAKMKDRFIGGAVERGFSKEKVEKLWDDIEKFASYSFNKSHSTAYAYLT 774 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832 Y TAW+KT+YP EF A ++ E +N K D FNI+++PP VN +F + + Sbjct: 775 YWTAWVKTYYPEEFFAVKLSTE-NNDSKFLNLLLDMENFNIKLLPPDVNKSMPEFAIEEK 833 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 ++I + L+ IKG+G A+ I+E + PF + DFC R D+K N++VLESL+ AGA D Sbjct: 834 SKIRFGLSRIKGIGEEVAKSIVEERKNGPFVDIFDFCERFDTKVANKKVLESLIKAGAFD 893 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-------HEKGTFSDKITLEKFSV 945 G R LL++++ Q +++ ++FA + K + D L Sbjct: 894 FEGIDRGILLENVEKAITTGQKARDSKSAGQNSLFALTTTPVVNVKHIYEDGTKL----T 949 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIR----GNNIRLAA 999 E +R E E VLGFY SGHPL+ YK L+ +K E ES + G+ +++A Sbjct: 950 EKEKLRLEKE--VLGFYLSGHPLNAYKNELKNKVLKISEIMESAFGDKTFQSGSKVKIAG 1007 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ + KKT+ G+ + S+ + + FP Sbjct: 1008 VIDEIKYKKTKSGATMIVFQISDETGQMDVRAFP 1041 >gi|309389826|gb|ADO77706.1| DNA polymerase III, alpha subunit [Halanaerobium praevalens DSM 2228] Length = 1118 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/1038 (36%), Positives = 606/1038 (58%), Gaps = 45/1038 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL H+++SLL+GA ++++++K + PA AITD L+ ++F +KA GI+P Sbjct: 3 NFVHLHNHTAFSLLDGATRIDSLIEKTKKYEMPAAAITDHGVLYGMIDFYRKAKKEGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + + + ++LL +GY LI+LVS+ +L + Sbjct: 63 IIGAELYLASGSRFEKNRKRY-------HLLLLAQNKQGYYNLIQLVSKAWL-EGFYYKP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L + ++GLI L+ G I + +A+K ++ +FG + ++ LQ Sbjct: 115 RVDKELLAKY-SDGLICLSACLQGEIPQLLIKGQYDLAQKAAADYRAIFGKNNFFLELQD 173 Query: 189 HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + +E +V Q L+ +P V TN+S +L++ED E D+L+A+ T ++ ++ Sbjct: 174 H---NLQKEKEVAQGLLKLSQAENIPTVITNDSHYLNQEDAELQDILLALQTGTTLADEN 230 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R T + Y K+ EM +F +L A +NTV+IA R L + LP++ D+ Sbjct: 231 RMTFTGQEFYYKSPKEMKKLFPELNSAYQNTVKIADRVELNLDFNHFYLPKY-----PDL 285 Query: 304 QKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 KE+ E L+ GL+ + + AK R+RL +ELN+I M ++ YFLIV Sbjct: 286 GKEKSAEELLQKLCFEGLKAK-EMDSDAKA------RKRLKYELNIIFEMGYAAYFLIVY 338 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+++A+ N I VGPGRGS AGS+ AY L IT ++PL++ L+FERFLNP+R++MPD DID Sbjct: 339 DFVKYAEDNGIMVGPGRGSAAGSLVAYLLKITKVNPLKYGLIFERFLNPERVTMPDIDID 398 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F ++R D++I YV+ +YG ERVAQI TFG++ A+AA+RDVGR L +PY +VD++ KLI + Sbjct: 399 FDENR-DQIIEYVKKRYGKERVAQIGTFGTMAARAAIRDVGRVLALPYKKVDQVAKLISS 457 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 SL++ + ++ D + L++ ++ +EGL RH STHAAG++IG PL+Q Sbjct: 458 RKGIKASLKS---QEKLQQLYQRDSQIKELIDYARGVEGLPRHISTHAAGVIIGAEPLAQ 514 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 +VP+ + +S +TQ M +E GL+K DFLGL+ LT+++ L + + +G K+D+ Sbjct: 515 IVPLQKQDQS--VITQLPMGDLEALGLLKMDFLGLRNLTVIKNCLQLIEKHKGKKIDIDN 572 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP D + Y L+T T G+FQ+ES + + M+P+ D+IA+++L RPGP+ + +V Sbjct: 573 IPLTDKDVYDFLSTGKTAGVFQMESYLFQSLNKKMKPEKFNDLIAMLALGRPGPLGSNIV 632 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + ++GK++ +HP + P+L+ET G+I+YQEQVM+IA L+GYS+ EAD+LRR MG Sbjct: 633 DDFIAIRHGKKEAEYLHPKLKPILEETFGMILYQEQVMEIASSLAGYSMGEADLLRRGMG 692 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK + + ++E+F+ GA GI + IA IF+ + FA YGFNKSH+ AYA ++YQTA+ Sbjct: 693 KKKLKLVAAEREKFVKGAVARGIQENIAQKIFDQMEYFAGYGFNKSHSTAYAFLAYQTAY 752 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837 +K HYP EF+AA + M N +KI + + ++I+PP +N +F DN I Y Sbjct: 753 LKYHYPAEFMAALFSSVMGNQDKIADYINSLAEIGLKIIPPDINRSDHNFTAANDNEILY 812 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIK VG+ +++A + F SL DF RVD ++N + LE+ V AGA D + Sbjct: 813 GLKAIKNVGSAAIEAVIKARKSEKFKSLVDFLKRVDISQINIQSLEAFVKAGAFDEIAVN 872 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHEN---IFAHEKGTFSDKITLEKFSVENSSVRFEN 954 R LL + + + + KNR ++ +F + + +K + E Sbjct: 873 RASLLLNYEELYNKYNNLAKNRAQGQQSFAELFEDQNKFMQTDLKYQKVDELKTETILEQ 932 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LG Y S HPLD Y+ L K+ +++ G + AA + + ++ T++ ++ Sbjct: 933 EKEFLGIYISAHPLDQYQAKLDKINFYSINKALTVDSGKKVLTAAYLSNYKEHITKRKNK 992 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + ++T S+ + E F Sbjct: 993 MAFLTVSDHQDKMEVIVF 1010 >gi|2073511|emb|CAA72479.1| DNA polymerase III alpha subunit [Rickettsia prowazekii] Length = 780 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/803 (43%), Positives = 495/803 (61%), Gaps = 50/803 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ + PA+ ++D NLF +LEFS A +Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKKLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I N I+L+ GY+ L++L S + K Sbjct: 63 PIHGVILNIQYDIN------------AFAQILLIAKDETGYKNLLKLSSLTF----TKND 106 Query: 129 VRICLSWLQEIG-------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 +IC + IG EG+I L + G + + + A + + GDR Sbjct: 107 RKIC----EHIGFEDLIKYQEGVIALCCYTDGIVGKCLLARKQEQAILFARRLQAILGDR 162 Query: 182 LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y + RH +++ E+ +Q+A +P+VATN LF + + AHDVL+ ++ Sbjct: 163 FYFEIMRHDLPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTK 222 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 DR V+ + Y K+ +EM +FSDLP A++NT+ + RC F + P+LP F Sbjct: 223 EYPDRKTVSENCYFKSPAEMRKLFSDLPNAIQNTINLRERCYFAAHPNPPMLPNF---ST 279 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKF 353 DI E +R A GL RL A+ + +Y RL++EL++I M F Sbjct: 280 QDIS--ETYLIRKYATEGLLARLVTKFKAENISLEHQEKLKTEYFTRLNYELDIICNMNF 337 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 +GYFLIV+DFI+W+KK I VGPGRGSGAGSV A++L +TD+DP++F LLFERFLNP+R+ Sbjct: 338 AGYFLIVSDFIKWSKKQGILVGPGRGSGAGSVVAWSLLVTDLDPIKFGLLFERFLNPERI 397 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFDIDFCQ+RR+EVI YV++KYG RV QIITFG +QAKA ++DV R L +PY D Sbjct: 398 SMPDFDIDFCQERREEVINYVRSKYGPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLAD 457 Query: 474 RLCKLIPNDPAHPVSL-QAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYR 523 L +L+P +PVSL QAI + A + + +L+ S LEGL+R Sbjct: 458 YLTELVPFSAINPVSLEQAIREVPELANAAKGNGLYNLEGDAELIKLVLDTSLILEGLHR 517 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 H+STHAAGIVI L +VP+Y+D +D+ + ++MK+ E AGLIKFDFLGL+TLT++ Sbjct: 518 HSSTHAAGIVIAGTDLVDIVPVYKDANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVIT 577 Query: 584 KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 L ++G+K+D + FDD +TY +L +G+FQ ES GM+ AL ++PD I D+ Sbjct: 578 NCKKLLKEQGIKIDFDDMTFDDKKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDL 637 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 IAL +LYRPGP++NI Y K+ ++ +H L++P+L+ET GV+IYQEQV +IAQ+L+ Sbjct: 638 IALGALYRPGPMENIPTYIACKHKLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLA 697 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GY+L AD+LRRAMGKKIK+EM++Q+E F+ GA N IS + A +IF +AKFA YGFNK Sbjct: 698 GYTLGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNK 757 Query: 764 SHAAAYAVISYQTAWMKTHYPVE 786 +HAAAY VISYQTA++K +YP E Sbjct: 758 AHAAAYGVISYQTAYLKANYPAE 780 >gi|154174535|ref|YP_001407866.1| DNA polymerase III subunit alpha [Campylobacter curvus 525.92] gi|112803372|gb|EAU00716.1| DNA polymerase III subunit alpha [Campylobacter curvus 525.92] Length = 1201 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/1048 (35%), Positives = 605/1048 (57%), Gaps = 53/1048 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA + + + + AITD N+F A++F + GI+P+ Sbjct: 4 FTHLHLHTEYSLLDGANKIKELAHVLHERGDTSAAITDHGNMFGAIDFYKTMKKEGIKPL 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I D+L G ++L+ GY+ L+ L S Y+ + R Sbjct: 64 IGIEAYIHNADDL-----GDKSSKQRFHLILIAKNETGYKNLMYLSSMSYI-EGFYYYPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPI-------DRAFFFNSS--QVAEKRLLTFKKLFGDR 181 I L+E +EG+I + G + +R + + + A++ L +K++FGD Sbjct: 118 INKKILKE-HSEGIICSSACLQGEVSWHLNLSERNLKYGAKGYEKAKEVALEYKEIFGDD 176 Query: 182 LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ + RH D+ R + ++++A + ++ATN++ + +E +AH+V M +A + ++ Sbjct: 177 FYLEIMRHGIGDQRRIDDDILRIAKETGIKVIATNDTHYTFKERADAHEVFMCIAMNKLL 236 Query: 241 SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---- 295 +R R + + ++K+ EM +F D+PE +ENT EI ++C+ +++ P P F Sbjct: 237 DDPNRLRHSVHEFFVKSEDEMKRLFLDIPEVIENTKEIVQKCNLEIKLGNPTPPNFKFTL 296 Query: 296 ---IEKECDDIQKEEENELRNKAV-------AGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 E+ + + + +N V GLE RL + + H ++Y++RL+ E+ Sbjct: 297 ECAAERGLNLPEPKNRYSFKNDTVFFEYECKKGLEERLK--FVPENLH-EEYKKRLEREI 353 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +I +M FSGY +IV DFI AK +PVGPGRGS AGS+ AY+L ITD+DP+ ++LLFE Sbjct: 354 EIINKMNFSGYMMIVWDFINEAKSRGVPVGPGRGSAAGSLVAYSLKITDLDPIPYNLLFE 413 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPD D+DFCQ RR E+I YV KYG VA +ITFG L AK +RDV R Sbjct: 414 RFLNPERVSMPDIDVDFCQSRRGEIIDYVTQKYGKYNVAGVITFGKLLAKGVIRDVARVC 473 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 MPY++ D + KLIP++ ++L+ A + + +E +P ++ + + LEGL R+ Sbjct: 474 DMPYAEADAMAKLIPDELG--ITLKDAFEKEPKIKELIDKNPKAAKIWKFALDLEGLNRN 531 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L P++R S D VTQ+++K++E LIKFDFLGLKTLT++ Sbjct: 532 AGQHAAGVVISNEELWHKTPLFRQPNSPEDRYVTQYSLKYLEDVDLIKFDFLGLKTLTVI 591 Query: 583 QKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R G V I +D Y ++ + +GIFQ+E GMR+ ++PDC E Sbjct: 592 DNAIKLVKRRTGKDVIWEQIDKNDKPVYDMIQSGQAIGIFQIEGEGMRKLGTSLRPDCFE 651 Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DI+A+++LYRPGP+++ ++ + RK+G+ I ++P+L T GVI+YQEQVMQI Sbjct: 652 DIVAMLALYRPGPMESGMLDDFVKRKHGEAAITYAFKELEPILAPTYGVIVYQEQVMQIV 711 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q + G+SL AD++RRAMGKK E + +QKE F+ GA K G + + ++F+L+ KFA Y Sbjct: 712 QKIGGFSLGGADLVRRAMGKKDPELLRQQKELFVEGAKKEGFNVQKSGDLFDLILKFAGY 771 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA +++QTA++K +YP EF+AA +T E NV+KI ++ ++++ I ++ P Sbjct: 772 GFNKSHSAAYAYVTFQTAFLKAYYPAEFMAALLTSEESNVDKIVRYIDESKRLKIDVLAP 831 Query: 820 SVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDS 874 S+N +F V DN I + L AIKGVG +I+ E F D SR+D+ Sbjct: 832 SINKSMKEFSVVDNGGHDGIIFGLGAIKGVGGAAIENIIAERERGGEFKDFNDLVSRIDA 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+N++V ESL+ AG D FG++R LL +++NI + + + R N +++F ++ Sbjct: 892 FKVNKKVFESLIKAGCFDEFGHTRKMLLANIENIIEACKNAAQIRKNAAQSLFGEDESMN 951 Query: 935 SDKITLEKFSVE---NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 KI + E ++FE E +G Y SGHPLD Y+ + ++ E + Sbjct: 952 DVKINFDPVDGEYDIKQILKFEQES--VGIYLSGHPLDDYREKISQIKYTLSSEFENLPQ 1009 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 I + + + T+ G ++G + Sbjct: 1010 SAEILVVGKIEDFSTRITKSGKKMGTIN 1037 >gi|300938591|ref|ZP_07153324.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 21-1] gi|300456473|gb|EFK19966.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 21-1] Length = 771 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/788 (44%), Positives = 501/788 (63%), Gaps = 34/788 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINRRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASM 792 EF+AA M Sbjct: 764 AEFMAAGM 771 >gi|315285249|gb|EFU44694.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 110-3] Length = 772 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/787 (44%), Positives = 500/787 (63%), Gaps = 34/787 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKKGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAAS 791 EF+AA Sbjct: 764 AEFMAAG 770 >gi|301025936|ref|ZP_07189420.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 69-1] gi|300395735|gb|EFJ79273.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 69-1] Length = 771 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/787 (44%), Positives = 500/787 (63%), Gaps = 34/787 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAAS 791 EF+AA Sbjct: 764 AEFMAAG 770 >gi|291519904|emb|CBK75125.1| DNA polymerase III catalytic subunit, DnaE type [Butyrivibrio fibrisolvens 16/4] Length = 1161 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1056 (36%), Positives = 586/1056 (55%), Gaps = 49/1056 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YSLL+G+ + + K A AITD N++ ++F ++ AAGI P Sbjct: 2 SFVHLHTHTEYSLLDGSNKIKAYVKKCVDMGMTAAAITDHGNMYGVIDFYKECKAAGINP 61 Query: 70 IIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 ++GC++ + QG+ + ++LL +GYQ LI++VS+ Y+ D Sbjct: 62 VLGCEVYVAPGSRFDRERVQGEDHYY---HLILLAENNQGYQNLIKIVSKGYV-DGYYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQ 187 R+ LQ+ +G+I L+ +G + RA A+ L ++ FG+ Y + LQ Sbjct: 118 PRVDFEILQQY-HQGIICLSACLAGEVARALNRGLYDEAKAVALKYRDCFGEGNYFLELQ 176 Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ +Q +++L+ +PLVATN+ + ++ED ++HDVL+ + + +DR Sbjct: 177 DHGIEEQKNVNQGLMRLSRETGIPLVATNDCHYTNKEDADSHDVLLCIQTGKKLQDEDRM 236 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + Y+K+ EM+ +F +A+ T EIA RC ++ LP F E D Sbjct: 237 RFETSEFYVKSEEEMLQLFPYATDAIGRTQEIADRCHVEIEFGVTKLPHFEVPEGYD--- 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 L GL+ R G A + + RL +EL VI M + YFLIV DFI Sbjct: 294 -SWTYLNKLCYEGLDRRY-------GDKASELKPRLKYELEVIKNMGYVDYFLIVWDFIN 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ + IPVGPGRGS AGS+ +Y IT+IDP+++SL+FERFLNP+R+SMPD DIDFC + Sbjct: 346 YARTHGIPVGPGRGSAAGSLVSYTTGITNIDPMKYSLVFERFLNPERVSMPDIDIDFCYE 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG + V QI+TFG+L+A+ +RDVGR + +PY VD + K+IP D Sbjct: 406 RRGEVIDYVIEKYGKDCVTQIVTFGTLKARGVIRDVGRVMDLPYGYVDSIAKMIPMDLGM 465 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ +S R +D V L+++++ LEGL R+ HAAG+VI +P+ + VP+ Sbjct: 466 TLD-KAMEANSELRAVYESDDQVKNLIDVARTLEGLPRNTGMHAAGVVIAGKPMDEYVPV 524 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 R VTQF M IE+ GL+K DFLGL+TLT++ ++ + + G+K+D+ I ++ Sbjct: 525 ARGADGSSIVTQFVMTTIEELGLLKMDFLGLRTLTVINDAVKLVEKNHGIKLDMDAIDYN 584 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +++ G+FQLES+GM+ ++ ++P IEDIIA +SLYRPGP+D I Y Sbjct: 585 DQGVMDMISAGKCEGVFQLESTGMKNFMKELKPHSIEDIIAGISLYRPGPMDFIPSYIKG 644 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN K+ IV P ++P+L T G I+YQEQVMQI Q L+GYSL AD +RRAM KK + Sbjct: 645 KNAKDAIVYDTPELEPILAPTYGCIVYQEQVMQIVQQLAGYSLGGADEIRRAMSKKKQYV 704 Query: 725 MDKQKERFISGAS----------------KNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 +++ +E F++G GIS +A I++ + FA Y FNKSHAAA Sbjct: 705 IEENREIFVNGGQIENHITGKITQIPGCVSKGISSEVANGIYDHMVDFAKYAFNKSHAAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YAV++ QTA++K +YP+EF+AA MT +D K+ ++ R IQ++PP VN F Sbjct: 765 YAVVAIQTAYLKKYYPIEFMAALMTSVIDASGKVAEYIAVCRGNGIQVLPPDVNNGEGRF 824 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V ++I Y L AIK VG T I+ + + + LEDF R+ N+R +E+L+ Sbjct: 825 SVDGDKIRYGLYAIKSVGRNTIDAIIYDREKNGTYRDLEDFIKRISKYDANKRTIENLIK 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSV 945 AGALD +R Q I +KN ++ FA E+ KIT+ K Sbjct: 885 AGALDTMDGNRRQKCMVFPEILDSVNNKKKNEIEGQMSLFDFASEEQKEDLKITMPKVDE 944 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILR--------KMGIKGYEESVATIRGNNIRL 997 + + E+ ++G Y SGHPLD Y +L+ K I V+ + + + Sbjct: 945 FDKEMLLAFEKELMGVYVSGHPLDDYISLLQKNVTAQANKFLIDEETGEVSVKDDSEVIV 1004 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ K T++G + ++T + E FP Sbjct: 1005 GGMITGITNKYTKQGKAMAFITIEDLTGTIEVIVFP 1040 >gi|254421416|ref|ZP_05035134.1| DNA polymerase III, alpha subunit subfamily, putative [Synechococcus sp. PCC 7335] gi|196188905|gb|EDX83869.1| DNA polymerase III, alpha subunit subfamily, putative [Synechococcus sp. PCC 7335] Length = 1175 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1072 (36%), Positives = 622/1072 (58%), Gaps = 74/1072 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA ++ ++D+ AIA+TD ++ A+E + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASHIDPLVDRALELGMDAIALTDHGVMYGAIELLKVCRKKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128 IIG ++ + D +T Q K P ++L GY+ L++L + +L QGK Sbjct: 62 IIGNEMYVINGD---ITKQEKRP---KYHQLVLAKNDIGYKNLVKLTTVSHLEGVQGKGL 115 Query: 129 V-RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R C++ L E EGLI+ + G I +A VA + +K L GD Y+ + Sbjct: 116 FSRPCINKDLLEQYHEGLIITSACLGGEIPQAILKKRLDVARRVAQWYKDLLGDDFYLEI 175 Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR ++V++A ++ +VATN+S F+S D EAHD L+ + ++S+ R Sbjct: 176 QDHGSPEDRIVNVEIVRIAQELDIKIVATNDSHFISCVDVEAHDALLCIQTGKLISEDKR 235 Query: 246 PRVTPDHYLKNRSEMVSIFSD--LPEALENTV----EIARRCSFILQVHAPILPRFIEKE 299 R + YLK+ +EM +F D PE +E+ V E+A + + P +P F E Sbjct: 236 LRYSGTEYLKSEAEMRRLFRDHIAPEIIEDAVSRTQEVADKVEEYNILGNPQIPNFPIPE 295 Query: 300 CDDIQKEEENELRNKAVAGL--EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E+ + A GL +RL+ + +YR R+ +E+ ++ +M F+ YF Sbjct: 296 G----HTKESYMEKVAWDGLLERMRLSN----REALTDEYRDRMAYEVAMMHQMGFATYF 347 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+V D+I++A+ +NI VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R SMPD Sbjct: 348 LVVWDYIKFARDHNISVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPD 407 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D DFC ++R++VI YV KYG + VAQIITF + +KA L+DV R L +PY++ D+L K Sbjct: 408 VDTDFCIEKREKVIEYVTEKYGTDHVAQIITFNRMTSKAVLKDVARVLDIPYNESDKLAK 467 Query: 478 LIPNDPAHPVSLQA-IAD---DSRFREARLA-------DPSVDRLLEISQKLEGLYRHAS 526 LIP P L I+D D+ F+E + + + R ++ + +EG + Sbjct: 468 LIPVSRGKPTKLNVMISDKTPDATFKEKYDSGELIPGTNVTFQRWIDTAITIEGTNKTFG 527 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HAAG+VI + PL +VP+ R+ + +TQ+ M+ +E GL+K DFLGL+ LT++QK++ Sbjct: 528 MHAAGVVISEHPLDTIVPLQRNNDGSV-ITQYYMEDVEAIGLLKMDFLGLRNLTMIQKAV 586 Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 D + R +++DL +P DD +TY LL G+FQLESSGMRQ ++ ++P +EDI + Sbjct: 587 DHIESRHNIEIDLDALPLDDPKTYELLAGGELAGVFQLESSGMRQIVKELKPSGLEDISS 646 Query: 646 LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 +++LYRPGP+D ++ + +RK+G+EKI H +++P+L+ET G+++YQEQ+M+IAQ L+ Sbjct: 647 VLALYRPGPLDAGLIPKFIDRKHGREKIDYAHKILEPILRETYGIMVYQEQIMKIAQDLA 706 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GYSL AD+LRRAMGKK +EM+ +E FI GA KN + A ++F+ + FA+Y FNK Sbjct: 707 GYSLGRADLLRRAMGKKKIKEMELHREEFIEGARKNEFPRKNANDLFDQMVLFAEYCFNK 766 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+ AY +++QTA++K +YPVE++AA +T + +K++ + IQ++PP +N Sbjct: 767 SHSTAYGFVTFQTAYLKANYPVEYMAALLTAISGDQDKVQMYIASCLSMRIQVLPPDINR 826 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVL 882 VDF +N+I + L+A++ VG ++++ ++ PF SL D C RVD + +N+R L Sbjct: 827 SEVDFTPLENQILFGLSAVRNVGLGAIEALIKSREEEGPFKSLADLCDRVDLRAVNKRAL 886 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--- 939 E+L+ +GAL+ +R QL+ L+ + ++AQ K+R N+F G S++ T Sbjct: 887 EALILSGALESLEPNRQQLMHDLELVIEWAQSRAKDREVGQGNLFDMLGGGTSNEPTHTT 946 Query: 940 ----------LEKFSVENSSVRFENEQRVLGFYFSGHPL-------DVYKPI-LRKMGIK 981 +E + + R + E+ +LGFY S HPL + PI L ++G K Sbjct: 947 TFESAPKAPPIEDYDPQE---RLKLEKELLGFYISDHPLKNIQHSAKILAPIELSELGEK 1003 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +++ I M+ + T+KG + V + EA FP Sbjct: 1004 PEKVTLSAI--------VMLSMVKPVTTKKGDSMAVVQIEDLTGHAEAVIFP 1047 >gi|254779972|ref|YP_003058079.1| DNA polymerase III subunit alpha [Helicobacter pylori B38] gi|254001885|emb|CAX30135.1| DNA polymerase III alpha subunit [Helicobacter pylori B38] Length = 1211 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1040 (37%), Positives = 598/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + ++ ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F +KE D + ++ + +KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAQKEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YQERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSV----------DR 510 R L MPY + D KLIPN ++L+ + F E A +P + R Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKR 527 Query: 511 LLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 + E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L A+KGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F G +++ L+ ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMGGGIKEQVVLDMTDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|228999385|ref|ZP_04158964.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock3-17] gi|228760330|gb|EEM09297.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock3-17] Length = 1096 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/1018 (36%), Positives = 595/1018 (58%), Gaps = 52/1018 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+ A ++ ++ + +++ITD N ++ + F + G++PIIG + Sbjct: 1 MLKSACKIDELVSRAKELGFSSLSITDENVMYGVIPFYKACKKNGVRPIIGLTASV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + + +P +VLL GYQ L+++ S + K I WL Sbjct: 57 ---FSEEEEQSYP----LVLLAENEMGYQNLLKISSTI----MTKSKDGIPKKWLSHYA- 104 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQV 200 +GLI ++ G G I++ ++AE+ ++ +FG Y++LQ H D + + ++ Sbjct: 105 KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMFGS-FYMSLQHHAIQDELFLQEKL 163 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSE 259 Q A +P+VATN+ ++++ D + L++V T ++ DRPR+ D +YLK+ +E Sbjct: 164 PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M ++FS EAL+NTV IA RC + H LP+F NE + + Sbjct: 224 MEALFSHAEEALQNTVCIAERCHVEIPFHVNQLPKF---------PVPSNETSDAYLR-- 272 Query: 320 EVRLAQGAIAKGYHA-QD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 R+ + + K Y A QD +R+RL+ EL VI+RM FS YFLIV DF+++ ++ I GPG Sbjct: 273 --RICEDGLNKRYGAVQDVHRKRLNHELEVISRMGFSDYFLIVWDFMKYGHEHGILTGPG 330 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF RRDE+IRYV++K Sbjct: 331 RGSAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDK 390 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497 YG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + +A + Sbjct: 391 YGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLK-EAYEESGS 449 Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557 RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + ++ +D+ VTQ Sbjct: 450 LREFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI-QEGHNDVYVTQ 508 Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKG 616 + + +E+ GL+K DFLGL+ LTLL+ L F+ + G ++D+ +P D +T+ LL Sbjct: 509 YPAEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGD 568 Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676 T G+FQLES GMR L ++P+ EDI+A+ +LYRPGP++ I + K+GK +I +H Sbjct: 569 TTGVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKCQIHYLHS 628 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736 + P+LK T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK +E +D++++ F+ G Sbjct: 629 DLKPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGC 688 Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796 +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++ + Sbjct: 689 LRNGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAI 748 Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856 N +KI ++ ++ ++ ++PPS++ +F++ N I YSL +I+ +G T ++E Sbjct: 749 GNEDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEE 808 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 PF L +FC R+ +K + R LE+ V+AG D F SR L S+ +YA Sbjct: 809 RERNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYAS--- 865 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYFSGHPLDVYKPIL 975 A E G S ++ E S + + NE+ LGFY S +P Y ++ Sbjct: 866 ----------LARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYPTAQYAKLV 915 Query: 976 RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +++ I +++ R N R V + +T+K ++ +VTF + E EA FP Sbjct: 916 KELEIPSLAQAMRQKR-NVQRAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972 >gi|315652846|ref|ZP_07905820.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium saburreum DSM 3986] gi|315485048|gb|EFU75456.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium saburreum DSM 3986] Length = 1152 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1051 (37%), Positives = 603/1051 (57%), Gaps = 47/1051 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + I+ + ++AITD ++ ++F ++A A GI+P Sbjct: 2 SFTHLHVHTGYSLLDGSCKIKEIISRAKKLNMASLAITDHGVMYGVIDFYKEAKANGIKP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+GC++ + K QG + ++LL +GY+ L ++VS+ + + Sbjct: 62 ILGCEVYVSPSSRFEKQAKQGDRYY----HLILLAKNNKGYENLTKIVSKGFT-EGFYYK 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L+E EG+I L+ +G I + + A+K +K LFG D Y+ LQ Sbjct: 117 PRIDFELLKEY-HEGIIALSACLAGEIPKLISRGREEEAKKVAKKYKDLFGEDNFYLELQ 175 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ +V++ ++PLVATN+ +++ ED +AHD+L+ + VS DR Sbjct: 176 NHGIPEQKFVNQSLVKIGKELDIPLVATNDIHYINAEDAKAHDILLCIQTGKTVSDPDRM 235 Query: 247 RVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + LK+ EM ++F PEA+ENT +IA C+ ++ LP + +++ Sbjct: 236 RYEGGQFFLKSEDEMKALFPYAPEAVENTGKIADMCNVEIKFGETKLPEY--PVPNNLSA 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E L + +G E K Y + ++ +R+ +EL VI M + YFLIV D+I Sbjct: 294 REY--LESLCKSGFERNYP-----KDYENREEIEKRMYYELGVIETMGYIDYFLIVWDYI 346 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A+ I VGPGRGS AGSV +Y L ITDIDP++++L+FERFLNP+R+SMPD D+DF Sbjct: 347 NYARSVGISVGPGRGSAAGSVVSYCLGITDIDPIKYNLIFERFLNPERVSMPDIDVDFAD 406 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV KYG ERV QIITFG+LQA+ +RDVGRA+++PY++ D + K+IP D Sbjct: 407 ERRGEVIDYVVGKYGSERVCQIITFGTLQARGVIRDVGRAMEIPYARCDSIAKMIPRDKD 466 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +SL A+ + +E +D V L++ S KLEGL RHAS HAAG+VI + + + VP Sbjct: 467 ITLSL-ALERNKELKELYDSDEVVHELIDYSLKLEGLPRHASIHAAGVVISKKAVDEYVP 525 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + + D TQF M +E+ GL+K DFLGL+TLT+LQ +L+ + + GV +DL I + Sbjct: 526 LALGI-DDAVTTQFTMTTLEELGLLKMDFLGLRTLTVLQNALEMIKKNHGVDIDLKKIDY 584 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 D + Y ++T T +FQLES GM+ ++ ++P+ +EDIIA +SLYRPGP+D I Y + Sbjct: 585 SDKKVYEFISTGKTDAVFQLESGGMQNFMKRLKPENLEDIIAGISLYRPGPMDFIPKYID 644 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 KN K K+ P + +L+ T G I+YQEQVMQI + L+GY++ +D +RRAM KK Sbjct: 645 GKNSKGKVSYDTPKLISILEPTYGCIVYQEQVMQIVRDLAGYTMGGSDEVRRAMSKKKAH 704 Query: 724 EMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 M+ +++ F I G KNGI + +A IF+ + FA Y FNKSHAA YAVISYQ Sbjct: 705 VMEMERKNFIYGNEEKKIKGCIKNGIDEKVANRIFDEMIDFASYAFNKSHAACYAVISYQ 764 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K +YP EF+AAS+T DN K+ ++ I+I+PP VN F V + I Sbjct: 765 TAYLKYYYPKEFMAASLTSVSDNPAKLSEYMGSLTDMGIKILPPDVNLGEGAFSVDKDGI 824 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + LA IKGVG A ++ E + + + +LE+F +R+ K LN+R +ES + AGALD Sbjct: 825 RFGLATIKGVGKAVADVLVRERTLNGRYLTLENFINRLPQKDLNKRSIESFIKAGALDGL 884 Query: 895 GYSRMQLLQS----LDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVENSS 949 +R + + + +D K ++ V + + + + ++ +F S+ I ++++ E Sbjct: 885 AGNRHEKILNAELLIDKKSKESKAVIPGQISFFDVVDKDDRDSFVSEMIHIDEYKKEE-- 942 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKM----GIKGYEESVATI---RGNNIRLAAMVV 1002 + E VLG Y SGHPL+ Y +L K I Y + I G + + ++ Sbjct: 943 -LLKYEMEVLGMYVSGHPLEEYITMLEKYTDVRSIDFYPDEDGNILIESGRKVVVGGLLS 1001 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ T+KG + T + E FP Sbjct: 1002 EVNKRFTKKGDMMAICTLEDMYGRIELVVFP 1032 >gi|315300688|gb|EFU59915.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 16-3] Length = 770 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/787 (44%), Positives = 500/787 (63%), Gaps = 34/787 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAAS 791 EF+AA Sbjct: 764 AEFMAAG 770 >gi|301167724|emb|CBW27308.1| DNA polymerase III alpha subunit [Bacteriovorax marinus SJ] Length = 1215 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1079 (36%), Positives = 619/1079 (57%), Gaps = 64/1079 (5%) Query: 5 LEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 LE P SFVHL +H+ YSLL+GA+ L +++ PAIA TD N+F A++F ++ Sbjct: 17 LETHPNSFVHLHLHTQYSLLDGAIRLKDLIPAAKEMGVPAIAQTDHGNMFGAIDFYKRCK 76 Query: 64 AAGIQPIIGCQLDI---------DMQDNLKMTNQGKTPFPT-VPSIVLLVSTAEGYQRLI 113 +AGI+PI+G ++ + + +++NQ + + ++LL GYQ L Sbjct: 77 SAGIKPILGSEIYFTPGSRFDRKSARRSARVSNQDEEESNHHIHHLILLAKNNIGYQNLC 136 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +L+SR YL + R + L+E +EGLI T G + FF + A + + Sbjct: 137 KLLSRAYL-EGFYYKPRADIELLKEY-SEGLICTTACLKGEVGYNFFTGQDEKAVRAIEK 194 Query: 174 FKKLFG-DRLYVNLQRH---RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 +++FG + Y+ +Q + D R +V++ A ++ +VATN++ +++ ED A + Sbjct: 195 LQEVFGYEDFYLEIQENGIPEQADVNR--KVLEYAKEKKVKVVATNDAHYMTPEDATAQE 252 Query: 230 VLMAVAHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ-- 286 VL+ + + ++R ++T + Y K+ +M F PEA + T+EIA +C+ L Sbjct: 253 VLLCIQTGKSFADENRMKMTSQEFYYKSPEKMREQFHYAPEACDATLEIADKCNVELNWT 312 Query: 287 -------VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK-----GYHA 334 H P P D + E++ R GLE R K + A Sbjct: 313 DEQGNQIYHLPDYPI-------DTGETEDDYFRRMCKEGLEERFRGPHFTKLVSEDNWKA 365 Query: 335 Q---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391 + Y +RL +E+++I M F GYFLIVADFIQW+K N IPVGPGRGSGAGS+ AYA+T Sbjct: 366 ELEPKYWERLKYEVDMIIEMGFPGYFLIVADFIQWSKNNGIPVGPGRGSGAGSLAAYAMT 425 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT+IDPL ++LLFERF+NP+R+SMPDFD+DFCQ R VI YV KYG E+V QIITFG Sbjct: 426 ITNIDPLPYNLLFERFINPERISMPDFDVDFCQAGRQRVIEYVTEKYGEEKVGQIITFGK 485 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDR 510 LQAKA ++DV R + +++ + L KLIP++ ++L+ AI + + +E D + + Sbjct: 486 LQAKAVVKDVSRVFDLSFAEANMLSKLIPDELG--INLEKAIEMEPKIQELIDTDSKIRQ 543 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 + IS++LEGLYRHA HAAG++I +PL + P+++ + + V QF+ + E+ GL+K Sbjct: 544 IFTISRRLEGLYRHAGIHAAGVIITSKPLVEYCPLFKGAKGE-KVVQFDKDFSEEIGLVK 602 Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 FDFLGLKTLT++ + F+ + VK D+ I ++D + Y + T+G+FQLESSGM Sbjct: 603 FDFLGLKTLTVIDYASKFVQRDHVKDFDIEEIDYEDKKVYDFIGDGNTIGVFQLESSGMI 662 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQG 687 + + PD I+DI A+ +LYRPGP+ + + + K+G++K + P+LK+T G Sbjct: 663 DLCKRIMPDSIDDITAINALYRPGPMGSGMHDQFVEIKHGRQKEHYAFEELRPLLKDTYG 722 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVM IA++L+GY+L +AD+LR+AMGKK +++ +E F+ GA++ G A Sbjct: 723 IIVYQEQVMNIARVLAGYTLGQADILRKAMGKKKIALIEEHREIFLKGAAERGFDVEKAG 782 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +++L+A FA+YGFNKSHA AY+ IS+QTA++K +YP F A ++ E+ N +K+ + Sbjct: 783 ELYQLMASFAEYGFNKSHAVAYSYISFQTAFLKYYYPACFFAGLLSTELSNTDKVTVYIN 842 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG-TTTARHIMEASADKPFDSLE 866 DA+ ++++PP VN F V I + + AIK VG + E + PF Sbjct: 843 DAKNHGVEVLPPDVNESLWLFNVIGQNIRFGMGAIKNVGENAVEELVREREENGPFKGFI 902 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALD-C-FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 DFC+RV K +N RV+ESL+ GA D C +R +L++ + I YA+ ++ + Sbjct: 903 DFCTRVSLKIVNNRVIESLIKVGAFDECETKLNRKTMLENAELIVTYAKKLQHEKELGQV 962 Query: 925 NIF-----AHEKGTFSDKITLEKFSVEN---SSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F + + +D + + + N + E +++G Y SGHPLD Y I+ Sbjct: 963 SLFDMGGSSSDDDGSNDPMKMLDIQITNDFDDREKLAYEAQLMGIYVSGHPLDRYSDIMG 1022 Query: 977 KMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K+ + G+ + LA ++ K+ T+KG R+ + + + + E FP Sbjct: 1023 KLASMDIAAARDLTGGDKREMMLAGLISEKRDIMTKKGDRMCFAQLEDLSGKIECIVFP 1081 >gi|302380218|ref|ZP_07268690.1| DNA polymerase III, alpha subunit [Finegoldia magna ACS-171-V-Col3] gi|302312001|gb|EFK94010.1| DNA polymerase III, alpha subunit [Finegoldia magna ACS-171-V-Col3] Length = 1161 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1059 (35%), Positives = 599/1059 (56%), Gaps = 62/1059 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G + +LDK+ + AIAITD ++F ++F ++ I+P Sbjct: 4 TFTHLHVHTEYSLLDGFSPIEKLLDKVEELKMKAIAITDHGSMFGTVKFYKECKKRNIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ +D+ K+ N + +VLL +GY L+++VS Y+ + Sbjct: 64 IIGCEIYTTNKDH-KIKNPENKFYN---HLVLLAKNQQGYSNLMKIVSLGYV-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ + L++ +EG+I L+ G + + A+ K ++G+ Y+ LQ H Sbjct: 119 RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177 Query: 190 RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 RE VV ++A ++ LV TN+ ++ +EDY+ H++L+ + + + + Sbjct: 178 SS----REDMVVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDN 233 Query: 245 RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + P + +L++ +M +F D PEA+ENT +IA C+ L+ LP F E Sbjct: 234 KMSYIPGEFFLRSEEQMKDLFKDYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPEG--- 290 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + L+ GLE R A Q+ ++R ++EL+VI +M + YFLIV DF Sbjct: 291 -FTNSSYLKKLVFDGLEKRFANDE-----RLQEAKERCEYELSVIEKMGYVDYFLIVWDF 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC Sbjct: 345 IRFAKSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M + VD K +PN Sbjct: 405 YERREEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLL 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +++ FR+A + V +L+++++++EG+ RH STHAAG+VI P+ + V Sbjct: 465 NINID-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYV 523 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ + D +TQFNM +E+ GL+K DFLGL+TLT++ + ++ + + + V+ + Sbjct: 524 PLA--INKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMN 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D + + T TLGIFQ ES GMR L+ ++P +D+IA +L+RPGP++ I Y Sbjct: 582 ENDPKVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYI 641 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 + K+ +E + + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK Sbjct: 642 HNKHNEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKM 701 Query: 723 EEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+ ++ F I GA + G+ + +A I++L+ FA Y FNKSH+AAY+ Sbjct: 702 KVMEDGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYS 761 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +++ +TAW+K +YPVEFLAA ++ M N +I + ++AR+ +I+I PP +N F V Sbjct: 762 LVAMRTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLDIEISPPDINYSLDKFDV 821 Query: 831 GDNRIYYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLV 886 DN I Y L AIK VGT + I+ + + F S DF R+ D +N+R +ESL+ Sbjct: 822 KDNSIIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLI 881 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEK 942 AGA G +R L+ +I Q KN N+F ++E+ D E+ Sbjct: 882 KAGAFSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREE 941 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGNN 994 F + S E+ VLG Y S HPL Y I+ + + Y E G Sbjct: 942 F---DKSELLRMEKEVLGIYLSDHPLRAYSSIIDQYSNFSTGDLEDDAYNEK--NFDGKR 996 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +++ ++ S +K T+ + +V F + E FP Sbjct: 997 VKVVGIIESINKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035 >gi|323485857|ref|ZP_08091192.1| hypothetical protein HMPREF9474_02943 [Clostridium symbiosum WAL-14163] gi|323400845|gb|EGA93208.1| hypothetical protein HMPREF9474_02943 [Clostridium symbiosum WAL-14163] Length = 1176 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1058 (37%), Positives = 593/1058 (56%), Gaps = 54/1058 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 E+ +F HL VH+ YSLL+ + + + + ++AITD ++ ++F + A A Sbjct: 14 EQGVAFTHLHVHTEYSLLDASSKIKELTARAKELGMDSLAITDHGVMYGVIDFYRAAKEA 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + N G+ + ++LL GYQ L+++VS+ ++ + Sbjct: 74 GIKPIIGCEIYVAPGSRFDRENVNGEDRYY---HLILLAENNVGYQNLMKIVSKGFV-EG 129 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183 R+ L+E +EG+I L+ G + R + A K L ++++FG+ + Sbjct: 130 FYYKPRVDFEVLREY-SEGIISLSACLGGEVQRYLTRGMYEEACKSALRYQEIFGEGNFF 188 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQ H G + L + EL PL ATN+ ++ +ED E+HD+L+ + V+ Sbjct: 189 LELQDH-GIPAQKTVNQGLLRMSQELGIPLTATNDCHYIYKEDVESHDILLCIQTGKKVA 247 Query: 242 QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++R R YLK+ EM IF +AL+NT +IA RC+ ++ LP+F E Sbjct: 248 DENRMRYEGGQFYLKSEEEMREIFPYAADALDNTHKIAERCNVDIEFGVTKLPQFDVPE- 306 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFL 358 LR +L K Y D ++RL++EL VI M + YFL Sbjct: 307 ---GYTSWEYLR---------KLCFDGFNKHYPDDDGTLKERLEYELGVIQSMGYVDYFL 354 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI +AK ++I VGPGRGS AGS+ AY+L ITDIDP+R+ LLFERFLNP+R+SMPD Sbjct: 355 IVWDFIHFAKSHDIMVGPGRGSAAGSIVAYSLGITDIDPIRYQLLFERFLNPERVSMPDI 414 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC +RR EVI YV +KYG +RV QI+TFG+L AK +RDVGR L MPY++ D + K+ Sbjct: 415 DIDFCFERRQEVIDYVVSKYGKDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDSIAKM 474 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP D + +A+ R A D V L+++S++LEGL RH S HAAG+VI Sbjct: 475 IPGDLGMTLD-KALKASPDLRSAYQEDDEVKYLIDMSRRLEGLPRHTSMHAAGVVISKAS 533 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--V 596 + + VP+ R + TQF M +E+ GL+K DFLGL+TLT++Q ++ LA++ K + Sbjct: 534 VDEYVPLSRAADGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVR-LAEKTCKKTI 591 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL I ++D + T G+FQLESSGM+ ++ ++P+ +EDIIA +SLYRPGP+D Sbjct: 592 DLYNIDYNDKNVLDAIGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMD 651 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I Y KN K+ I P ++P+L T G I+YQEQVMQI + L+GY+L +D++RRA Sbjct: 652 FIPRYLKGKNDKKSITYECPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRA 711 Query: 717 MGKKIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAA 768 M KK M+K+++ F+ G + NGI + A +I++ + FA Y FNKSHAAA Sbjct: 712 MSKKKGSVMEKERQNFVYGNGEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAA 771 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YAV+SYQTA++K +YPVEF+AA MT DNV K+ ++ RQ ++I+PP +N F Sbjct: 772 YAVVSYQTAYLKYYYPVEFMAALMTSVKDNVTKVSEYIMACRQMGMKIVPPDINEGEGGF 831 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVF 887 V I Y L+AIK +G + I++ ++ F +LEDF R+ SK++N+R LES + Sbjct: 832 SVSGGSIRYGLSAIKSIGQSVVEEIVKERRERGEFKTLEDFVDRMSSKEVNKRTLESFIK 891 Query: 888 AGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 +GA+D +R Q Q LD K + + + + + EK F ++T Sbjct: 892 SGAMDSLPGTRKQKFLVSAQLLDQKNKEKKNSMEGQMTMFDFVAEEEKENF--QVTFPNV 949 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIR-GNNI 995 E+ +LG Y SGHP++ Y + K I E A +R G + Sbjct: 950 GEYTKDELLYFEKEMLGVYISGHPMEAYIGLWEKNVTARTSDFIVDEETGEAQVRDGAIV 1009 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + M+ +K K TR + +VT + E FP Sbjct: 1010 TIGGMLTAKTVKTTRTNKMMAFVTIEDLYGSVEVLVFP 1047 >gi|323693196|ref|ZP_08107414.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323502679|gb|EGB18523.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 1176 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1058 (37%), Positives = 593/1058 (56%), Gaps = 54/1058 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 E+ +F HL VH+ YSLL+ + + + + ++AITD ++ ++F + A A Sbjct: 14 EQGVAFTHLHVHTEYSLLDASSKIKELTARAKELGMDSLAITDHGVMYGVIDFYRAAKEA 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + N G+ + ++LL GYQ L+++VS+ ++ + Sbjct: 74 GIKPIIGCEIYVAPGSRFDRENVNGEDRYY---HLILLAENNVGYQNLMKIVSKGFV-EG 129 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183 R+ L+E +EG+I L+ G + R + A K L ++++FG+ + Sbjct: 130 FYYKPRVDFEVLREY-SEGIISLSACLGGEVQRYLTRGMYEEACKSALRYQEIFGEGNFF 188 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQ H G + L + EL PL ATN+ ++ +ED E+HD+L+ + V+ Sbjct: 189 LELQDH-GIPAQKTVNQGLLRMSQELGIPLTATNDCHYIYKEDVESHDILLCIQTGKKVA 247 Query: 242 QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++R R YLK+ EM IF +AL+NT +IA RC+ ++ LP+F E Sbjct: 248 DENRMRYEGGQFYLKSEEEMREIFPYAADALDNTHKIAERCNVDIEFGVTKLPQFDVPE- 306 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFL 358 LR +L K Y D ++RL++EL VI M + YFL Sbjct: 307 ---GYTSWEYLR---------KLCFDGFNKHYPDDDGTLKERLEYELGVIQSMGYVDYFL 354 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI +AK ++I VGPGRGS AGS+ AY+L ITDIDP+R+ LLFERFLNP+R+SMPD Sbjct: 355 IVWDFIHFAKSHDIMVGPGRGSAAGSIVAYSLGITDIDPIRYQLLFERFLNPERVSMPDI 414 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC +RR EVI YV +KYG +RV QI+TFG+L AK +RDVGR L MPY++ D + K+ Sbjct: 415 DIDFCFERRQEVIDYVVSKYGKDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDSIAKM 474 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP D + +A+ R A D V L+++S++LEGL RH S HAAG+VI Sbjct: 475 IPGDLGMTLD-KALKASPDLRNAYQEDDEVKYLIDMSRRLEGLPRHTSMHAAGVVISKAS 533 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--V 596 + + VP+ R + TQF M +E+ GL+K DFLGL+TLT++Q ++ LA++ K + Sbjct: 534 VDEYVPLSRAADGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVR-LAEKTCKKTI 591 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL I ++D + T G+FQLESSGM+ ++ ++P+ +EDIIA +SLYRPGP+D Sbjct: 592 DLYNIDYNDKNVLDAIGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMD 651 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I Y KN K+ I P ++P+L T G I+YQEQVMQI + L+GY+L +D++RRA Sbjct: 652 FIPRYLKGKNDKKSITYECPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRA 711 Query: 717 MGKKIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAA 768 M KK M+K+++ F+ G + NGI + A +I++ + FA Y FNKSHAAA Sbjct: 712 MSKKKGSVMEKERQNFVYGNGEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAA 771 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YAV+SYQTA++K +YPVEF+AA MT DNV K+ ++ RQ ++I+PP +N F Sbjct: 772 YAVVSYQTAYLKYYYPVEFMAALMTSVKDNVTKVSEYIMACRQMGMKIVPPDINEGEGGF 831 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVF 887 V I Y L+AIK +G + I++ ++ F +LEDF R+ SK++N+R LES + Sbjct: 832 SVSGGSIRYGLSAIKSIGQSVVEEIVKERRERGEFKTLEDFVDRMSSKEVNKRTLESFIK 891 Query: 888 AGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 +GA+D +R Q Q LD K + + + + + EK F ++T Sbjct: 892 SGAMDSLPGTRKQKFLVSAQLLDQKNKEKKNSMEGQMTMFDFVAEEEKENF--QVTFPNV 949 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIR-GNNI 995 E+ +LG Y SGHP++ Y + K I E A +R G + Sbjct: 950 GEYTKDELLYFEKEMLGVYISGHPMEAYIGLWEKNVTARTSDFIVDEETGEAQVRDGAIV 1009 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + M+ +K K TR + +VT + E FP Sbjct: 1010 TIGGMLTAKTVKTTRTNKMMAFVTIEDLYGSVEVLVFP 1047 >gi|307638113|gb|ADN80563.1| DNA polymerase III alpha subunit [Helicobacter pylori 908] Length = 1211 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1040 (37%), Positives = 599/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ LI +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLI-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F ++E D + ++ + +KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAKEEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YKERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNEIAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHKIGVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RTKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F +G +++ L+ + ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|301028677|ref|ZP_07191898.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 196-1] gi|299878309|gb|EFI86520.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 196-1] Length = 771 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/787 (44%), Positives = 500/787 (63%), Gaps = 34/787 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKKGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAAS 791 EF+AA Sbjct: 764 AEFMAAG 770 >gi|296125094|ref|YP_003632346.1| DNA polymerase III, alpha subunit [Brachyspira murdochii DSM 12563] gi|296016910|gb|ADG70147.1| DNA polymerase III, alpha subunit [Brachyspira murdochii DSM 12563] Length = 1240 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/987 (37%), Positives = 571/987 (57%), Gaps = 40/987 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSA 55 SFVHL VH+ YS+L+GA + ++ +D+ + PAIAITD N+F Sbjct: 2 SFVHLHVHTQYSILDGASRIKSLYSKKDKKKRLIPGLIDRAVELEMPAIAITDHGNMFGV 61 Query: 56 LEFSQKACAAGIQPIIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 +EF +A GI P+IGC+L + + K+ N + + ++LL EGY L Sbjct: 62 MEFFSEAKDKGIIPVIGCELYVAPKTRFDKKIENSEEK---SAMHLILLAKDKEGYDNLC 118 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +LV+ Y +G L E +GLI L+ G I A + A K Sbjct: 119 KLVTFGYT--EGFYYRPRVDHELIEKYNKGLICLSACMGGEIPIAIRKKDYKQASKLAEY 176 Query: 174 FKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +K +FG+ Y+ LQ H ++ S + +LA H + +V TN+ ++ +ED +AH++L+ Sbjct: 177 YKSIFGNDFYIELQDHNIPEEKSLNSALYKLANHHSIEMVVTNDVHYVLKEDAKAHEILL 236 Query: 233 AVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAP 290 A+ + R + + + LK++ EM+ F+ LP+A ENTV+IA +C + + Sbjct: 237 AIQTKATLDSPRRYKFPSNEFHLKSKEEMMKSFAKLPKAFENTVKIAEQCRDLNIMTKTY 296 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 +P + E + + E LRN + GL ++ +RL+ EL VI++ Sbjct: 297 YMPNY---ELPN-GETETTALRNMCMEGLNKHYNNNI------PKEAMERLEMELGVISK 346 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYFL+V DFI +A+ +++ VGPGRGS AGS+ A+A IT ++PL ++LLFERFLNP Sbjct: 347 MGFEGYFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNP 406 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R SMPD D+DF D+R+ +I YV+ KYG + VAQI TFG+L ++ +RDV R + + + Sbjct: 407 ERKSMPDIDVDFQDDKREVIIDYVKEKYGKDNVAQIATFGALGGRSVIRDVCRVMGIDLA 466 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 DRL K IPND + V + D + FR+ + + + EIS +L+GL R+ HAA Sbjct: 467 TADRLAKGIPNDVSRVVDIYDHPDCAEFRKEVESSRELKNMYEISTRLDGLVRNVGLHAA 526 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G++I P+ L P+Y+D ++ Q+ M ++E AGLIK DFLG+K L L++ ++ + Sbjct: 527 GVIISSHPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAVKDIK 586 Query: 591 QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 +R G ++D+ IP DD Y + T G+FQ ES GMRQ L +QP +D+++ V+L Sbjct: 587 ERYGTEIDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVAL 646 Query: 650 YRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 YRPGP+++ + Y +RKN +++IV HP ++P+LKE+QGV+IYQEQ+M I++++ G++ Sbjct: 647 YRPGPLNSGMDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRVIGGFTA 706 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 +EAD LR+AMGKKI E+M+ +E+FI+G + G K + +F+ + FA+YGFNKSH+ Sbjct: 707 AEADDLRKAMGKKIVEKMNSMEEKFINGGLERGYDKELLTYLFDTMKGFAEYGFNKSHSV 766 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 YA+I+YQ A++K HYP+E+ A + + + +KI + + +Q NI I+ SV Sbjct: 767 CYALIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEVKQKNIDIVTASVFESNAL 826 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F + +I Y+L A+KGVG A I E + F +LEDF RVD +NR+V E+L+ Sbjct: 827 FSQKNGKIVYALHAVKGVGLHAALAIEEEREKNGQFKNLEDFVKRVDVHLVNRKVYETLI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFS 944 GA FG++ LL SLD I +A +K + +F E + S + +EK Sbjct: 887 KCGAFSEFGHTESALLASLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASLVIEKQV 946 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVY 971 S++ ENE+ VLGF HP Y Sbjct: 947 EYASNILMENEKEVLGFSLRYHPFARY 973 >gi|331086727|ref|ZP_08335804.1| hypothetical protein HMPREF0987_02107 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409893|gb|EGG89328.1| hypothetical protein HMPREF0987_02107 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1158 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1051 (36%), Positives = 603/1051 (57%), Gaps = 47/1051 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD +F ++F + A AAGI P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGINP 61 Query: 70 IIGCQLDIDMQDNLKM-TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+GC++ + N G+ + +VLL +GYQ L+++VS+ ++ + Sbjct: 62 ILGCEVYVAPGSRFDHEINGGEDRYY---HLVLLAENNQGYQNLMKIVSKGFV-EGYYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 RI + L+E EG+I L+ +G + + + A++ L ++ +FG ++ LQ Sbjct: 118 PRIDIELLEEY-HEGIIALSACLAGEVQKNLLRGMFEEAKQAALRYESIFGKGNFFLELQ 176 Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ +Q +++LA + LVATN+ + ED + HD+L+ + ++ ++R Sbjct: 177 DHGLTEQADVNQRLIRLAAETGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLTDENRM 236 Query: 247 RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R +Y+K+ EM+ +F +ALENT +IA RC ++ LP++ + Sbjct: 237 RYAGGQYYVKSEQEMIELFPYARQALENTQKIADRCHVEIEFGVTKLPKY-DVPGGMTSW 295 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E N+L GLE R ++ ++RL +EL+ I M + YFLIV DFI+ Sbjct: 296 EYLNQL---CFEGLERRYPN-------PGEELKERLFYELSTIKNMGYVDYFLIVWDFIK 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ N+I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R+SMPD DIDFC + Sbjct: 346 YARDNDISVGPGRGSAAGSIVSYCLGITNIDPIRYQLLFERFLNPERVSMPDIDIDFCFE 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG +RV QI+TFG++ A+ +RDVGR + +PY+ VD + K+IP + Sbjct: 406 RRQEVIDYVVRKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDTIAKMIPTELNI 465 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + FR+ D V L+++S++LEGL RH S HAAG+VI + + + VP+ Sbjct: 466 TID-KALKMNPEFRKMYETDEQVKYLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVPL 524 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 R + TQF M +E+ GL+K DFLGL+TLT++Q +++ + Q GVK+D+ I ++ Sbjct: 525 SRASDGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVNLVEQATGVKLDMGEIDYN 583 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + T T G+FQLES+GM+ ++ ++P +EDIIA +SLYRPGP+D I Y Sbjct: 584 DKLVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKG 643 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN K I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM KK + Sbjct: 644 KNDKGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKADV 703 Query: 725 MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 M+++++ F + G NGI + A I++ + FA Y FNKSHAAAYAV+SYQT Sbjct: 704 MERERQSFVYGNIDEGVPGCLNNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQT 763 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K +YP+EF+AA MT ++N K+ ++ ARQ I+I+PP +N F V + I Sbjct: 764 AYLKYYYPIEFMAALMTSVIENPTKVSEYIYAARQMGIKILPPDINRGVSGFSVDEGNIR 823 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCF 894 Y LAAIK +G I+ E + + L+DF R+ K+ LN+R +E+ + AGALD Sbjct: 824 YGLAAIKSIGKPVIEAIVSEREENGLYRGLKDFIERISLKEMLNKRSIENFIKAGALDNL 883 Query: 895 GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 G +R Q + Q +DN+ + ++ + + + + +K F +I L Sbjct: 884 GGTRKQFMMIYIQIVDNVNQEKKFSMSGQMSLFDFVDEDQKKEF--EIQLPDVGEYEKET 941 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIR--LAAMVV 1002 E+ VLG Y SGHPLD Y+ +K + + EE+ T + + + M+V Sbjct: 942 LLAFEKEVLGVYISGHPLDAYEEQWKKSVSATTLDFQLDEETNRTKVHDGAKEIIGGMIV 1001 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K T+ + ++T + E FP Sbjct: 1002 GKTIKHTKTNQMMAFITVEDLLGTVEVVVFP 1032 >gi|300956067|ref|ZP_07168392.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 175-1] gi|300317097|gb|EFJ66881.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 175-1] Length = 773 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/787 (44%), Positives = 500/787 (63%), Gaps = 34/787 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKKGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAAS 791 EF+AA Sbjct: 764 AEFMAAG 770 >gi|261838735|gb|ACX98501.1| DNA polymerase III alpha subunit [Helicobacter pylori 51] Length = 1211 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1038 (37%), Positives = 598/1038 (57%), Gaps = 71/1038 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + E + + ++ + +KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAHKAREGLKERLV--LVPKEKHDQ-YKERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKSELEKKIVFGLGAIKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + + Sbjct: 887 RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKD 946 Query: 917 K-NRTNKHEN-IFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYK 972 K N + +N +F G +++ L+ + ++ E E LG + SG+PLD +K Sbjct: 947 KANEMMQGDNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFK 1006 Query: 973 PILRKMGIKGYEESVATI 990 IKG++ V +I Sbjct: 1007 E-----EIKGFKNLVKSI 1019 >gi|217031799|ref|ZP_03437302.1| hypothetical protein HPB128_199g7 [Helicobacter pylori B128] gi|298735572|ref|YP_003728093.1| DNA polymerase III subunit alpha [Helicobacter pylori B8] gi|216946451|gb|EEC25053.1| hypothetical protein HPB128_199g7 [Helicobacter pylori B128] gi|298354757|emb|CBI65629.1| DNA polymerase III subunit alpha [Helicobacter pylori B8] Length = 1211 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/1041 (37%), Positives = 599/1041 (57%), Gaps = 77/1041 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + ++ ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRFIEKECDDIQKEE----ENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + P P F K KEE E++ +KA GL+ RL + K H Q Y++R Sbjct: 294 NPPTPPSF--KFTKSYAKEEGLNFEDDASYFAHKAREGLKERLI--LVPKEKHDQ-YQER 348 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 L+ E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 349 LEKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKY 408 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RD Sbjct: 409 DLLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRD 468 Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512 V R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 469 VARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNDTAR 526 Query: 513 ---EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E L Sbjct: 527 QVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDL 586 Query: 569 IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 IKFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SG Sbjct: 587 IKFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SG 645 Query: 628 MRQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684 M Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK Sbjct: 646 MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYALKELEPILKP 705 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 706 TYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQ 765 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + + Sbjct: 766 KAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVAR 825 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIME 855 + + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 826 YIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIE 885 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 886 ERAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR-- 943 Query: 916 EKNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLD 969 K++ N+ ++F +G +++ L+ + ++ E E LG + SG+PLD Sbjct: 944 AKDKANEMMQGGNSLFGAMEGGIKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLD 1003 Query: 970 VYKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1004 EFKE-----EIKGFKNLVKSI 1019 >gi|291458628|ref|ZP_06598018.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291419161|gb|EFE92880.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 1188 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1063 (36%), Positives = 604/1063 (56%), Gaps = 69/1063 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+SYSLL+GA + ++ ++ A+AITD ++ ++F ++A A GI P Sbjct: 29 SFTHLHVHTSYSLLDGAGKIPEMIARVKELGMDAVAITDHGVMYGVIDFYKEAKAQGIHP 88 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + GK +VLL EGY L++LV+R + + Sbjct: 89 ILGCEIYLSPASRFDKSF-GKAE-ARYYHLVLLAENEEGYHNLMKLVTRGFT-EGFYYKP 145 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L+ GLI L+ +G + R + + A L ++++FG ++ LQ Sbjct: 146 RVDFELLRRYHG-GLIALSACLAGELARDLSRDQYEEARDAALRYQEIFGKGNFFLELQD 204 Query: 189 HRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H GY R+ +++L +P+VATN+ + ED +AHD+L+ + ++ +DR Sbjct: 205 H-GYPEQRKVNQGLLRLHEDTGIPMVATNDIHYTFREDAKAHDILLCLQTGKKLNDQDRM 263 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R Y+K+ EM +F EA+ NT +IA RC ++ LP++ E D Sbjct: 264 RYPGGQFYIKSEEEMRELFPYAEEAILNTEKIAERCQVEIEFGHYHLPKY---EVPD-GF 319 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR GL R G A+ YR+RL +EL+VI+ M F+ YFLIV D+I Sbjct: 320 TPLSYLRKLCEEGLVRRY-------GEEAEHYRERLSYELSVISSMGFTEYFLIVWDYIH 372 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK + I VGPGRGS AGS+ AY++ ITDIDP+R+ LLFERFLNP+R++MPD D+DF + Sbjct: 373 FAKTHGIAVGPGRGSAAGSIVAYSIGITDIDPMRYQLLFERFLNPERVTMPDIDVDFEYE 432 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG E+V+QIITFG+L AK +RDVGR + +PY++ D + KLIPN+ Sbjct: 433 RRQEVIDYVTKKYGKEQVSQIITFGTLAAKGVVRDVGRVMDIPYAKCDMIAKLIPNELNM 492 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ ++ D R++++S++LEGL RH+STHAAG+VI + + VP+ Sbjct: 493 TLE-RALFGSPDLKKLYEEDEETRRIIDMSRRLEGLPRHSSTHAAGVVIAGSAVEEFVPL 551 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 ++ + TQF M +E+ GL+K DFLGL+TLT++Q ++ F + G ++DL + ++ Sbjct: 552 SKNTDGAV-TTQFTMTTVEELGLLKMDFLGLRTLTVIQDAIRFAEKDYGKRIDLERMDYE 610 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + Y +++ G+FQLES GM ++ ++P +ED+IA VSLYRPGP+D I Y Sbjct: 611 DPKVYEMISRGDCAGVFQLESGGMVSFMKRLRPTSLEDVIAGVSLYRPGPMDFIPKYIEG 670 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K E++ HP I+P+LK T G I+YQEQVMQI + L+GYS+ +D+LRRAM KK Sbjct: 671 KKHPERVSYEHPRIEPILKSTYGCIVYQEQVMQIVRELAGYSMGRSDLLRRAMSKKKASV 730 Query: 725 MDKQKERFISGASKN--------GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 M+K++ F+ G + GIS+ +A +I++ + FA Y FNKSHAA YA+I+YQT Sbjct: 731 MEKERRNFVYGNPEEGIPGCLSAGISEQVANHIYDEMIDFAKYAFNKSHAACYALIAYQT 790 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K +YP EF AA M+ MDN K ++ + AR I I+PP +N F V D I Sbjct: 791 AYLKCYYPAEFYAALMSSFMDNAGKTAEYLEFARDREIPILPPDINLAESGFSVSDASIR 850 Query: 837 YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L+A+KG+G + A I+E F LEDF R+ + +NRR +ESL+++GALD Sbjct: 851 YGLSAVKGIGRSAAEQIIEERRRGGKFRDLEDFLLRISDRGVNRRAVESLIYSGALDSLP 910 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF--- 952 +R + + +L ++ ++++ + N A + T +D L + + E + RF Sbjct: 911 GNRREKVTAL-------PFLLESKSKEKRNAMAGQM-TLAD--LLGEDNEEAEAFRFTMP 960 Query: 953 -----------ENEQRVLGFYFSGHPLDVYKPIL-----RKMGI------KGYEESVATI 990 NE+ LG Y SGHPLD + +L K G G E ++ Sbjct: 961 VLPEFPKAELLRNEKDALGVYLSGHPLDSDRELLDFYVDAKAGAFRTDPESGEEGGLS-- 1018 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ +QK T+K + ++T + E FP Sbjct: 1019 EGQLVTVGGLLTEIRQKVTKKNELMAFLTLEDRQGSIEVTVFP 1061 >gi|152976985|ref|YP_001376502.1| DNA polymerase III DnaE [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025737|gb|ABS23507.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98] Length = 1109 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/1030 (35%), Positives = 594/1030 (57%), Gaps = 54/1030 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + YSLL+ A ++ ++ + A+AITD N ++ + F + GI+PI Sbjct: 3 FVHLQCQTVYSLLKSACKIDELVARAKELGFSALAITDENVMYGVIPFYKACKKMGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + + +P +VLL GYQ L+++ S + K Sbjct: 63 IGLTASV-------FNEEEERAYP----LVLLAENEVGYQNLLKISSTI----MTKSKDG 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GL ++ G G I++ + AE+ T++ +FG Y+++Q H Sbjct: 108 IPKKWLVHYA-KGLTAISPGKDGEIEQLLLQGKDERAEEVARTYQNMFG-HFYMSVQHHA 165 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + ++ + +P+VATN+ ++++ D + L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKIEEFVRNMNIPIVATNDVRYINQNDALVQECLLSVQSGTKMTDPDRPRLK 225 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +YLK+ +EM ++FS + EAL NT+ IA RC + H LP+F + E Sbjct: 226 TDQYYLKSSAEMEALFSHVEEALRNTIHIAERCHVEIPFHVNQLPKF------PVPTNET 279 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ LR GL R G + + RL EL VI+RM FS YFLIV DF+++ Sbjct: 280 SDAYLRRMCEEGLYKRY-------GTPKEVHVNRLYHELEVISRMGFSDYFLIVWDFMKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N I GPGRGS AGS+ AY L ITDIDP+ ++LLFERFLNP+R+++PD DIDF R Sbjct: 333 AHENRILTGPGRGSAAGSLVAYVLEITDIDPIAYNLLFERFLNPERVTLPDIDIDFPDVR 392 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDE+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ Sbjct: 393 RDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDLFSKLIPSKLG-- 450 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ ++S R+ + +R+ EI++++EGL RH S HAAG+++ PL++ + + Sbjct: 451 ITLKEAYEESEALRDFIQGNLLYERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTKSIAI 510 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ L F+ G ++D+ + Sbjct: 511 -QEGHNDVYVTQYPADVLEELGLLKMDFLGLRNLTLLENILTFITTTTGKQIDIRNVSLQ 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T G+FQLES GMR L G++P+ EDI+ + SLYRPGP++ I V+ Sbjct: 570 DEKTFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVVVNSLYRPGPMEQIPVFIES 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ I +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ Sbjct: 630 KHGRRNIQYLHPDLKPILESTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKSRDI 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 ++++++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP Sbjct: 690 LEEERKHFVQGCLQNGYDQTSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYP 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 ++F+ A ++ + N +KI ++ ++ ++ ++PPS++ F++ N I YSL +I+ Sbjct: 750 LQFMTALLSSAIGNEDKITQYIRETKRKGFCVLPPSLHRSGYHFQIEGNAIRYSLLSIRN 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G T ++E PF L +FC R+ K + R LE+ V++G D F SR L S Sbjct: 810 IGMATVTALIEEREKAPFQDLFEFCLRMPVKFVTERNLEAFVWSGCFDDFQVSRTTLFNS 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYF 963 + +YA A E G S ++ E S + + E+ LGFY Sbjct: 870 IKGALEYAS-------------LARELGEESVPKSVYVQGKELSFIEQLNKEKETLGFYL 916 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 S +P Y +++++ I +++ +G R + + +T+K ++ +VTF + Sbjct: 917 SSYPTAQYASLVKELEIPSLAQAMRQ-KGKVQRAIVYITRVKIIRTKKMQKMAFVTFCDQ 975 Query: 1024 AKEYEANFFP 1033 E EA FP Sbjct: 976 NDEMEAVVFP 985 >gi|300814414|ref|ZP_07094685.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511522|gb|EFK38751.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 1145 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1050 (36%), Positives = 605/1050 (57%), Gaps = 55/1050 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F+HL VHS YSLL+ + + I + A+A+TD N++ A++F + G++P Sbjct: 3 NFIHLHVHSEYSLLDASTKIEEIPVRAKELGMKAVALTDHGNMYGAIDFYKACKKVGVKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + Q +L + ++ + +VLL +G + L+++VS + +D Sbjct: 63 IIGCEIYVS-QKSLYLKDRTNERY----HLVLLAENNQGLKNLMKIVS-IAFVDGYYYKP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L L++ ++G+I + +G + R A+K L ++ +FG D ++ LQ Sbjct: 117 RVDLDVLKKY-SKGIIATSACLAGEVQRLIQRRDYDEAKKAALRYRDIFGKDNFFLELQD 175 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R ++ +L+ + L +N+ +L +ED +A DVL+ + + + R + Sbjct: 176 HGIPEQKRVNRELNRLSKETGISLSCSNDVHYLKKEDAKATDVLLCIQTGAKIKDEKRMK 235 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + YLK+ EM +IFSD +A+ NT IA RC+ + LP F + Sbjct: 236 FPTEEFYLKSAEEMENIFSDNLDAINNTGIIADRCNVDFEFGHYHLPEF------KVPSG 289 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFI 364 NE + LE +LA+ + K Y D + R + E I +M F YFLIV DFI Sbjct: 290 YTNE------SYLE-KLAKEGLNKRYKVIDKKIKDRFNMEFQTITQMGFVDYFLIVWDFI 342 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 + KKNNI VGPGRGS AGS+ +Y L I DIDPL+F LLFERFLN +R+SMPD DIDFC Sbjct: 343 NYVKKNNIQVGPGRGSAAGSIISYGLGIIDIDPLKFDLLFERFLNKERVSMPDIDIDFCY 402 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EVI YV KYG ERVAQI+TFG++Q++ A+RDVGR L + YS+VD + K +P+ A Sbjct: 403 ERREEVIDYVCEKYGDERVAQIVTFGTMQSRQAIRDVGRVLDIAYSRVDYIAKQVPH--A 460 Query: 485 HPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++L D S F+E D L++I++++EGL RH STHAAG+VI PL+ V Sbjct: 461 LKMTLDKALDISESFKELYEKDKEARNLIDIAKRIEGLPRHTSTHAAGVVISKNPLTDYV 520 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602 P+ R+ + TQFNM +E+ GL+K DFLGL+TLT+L+ ++ + VK+D S Sbjct: 521 PLTRN--DQIIATQFNMIQLEELGLLKMDFLGLRTLTVLRDAISLVYDNYKVKIDFSEFT 578 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD + + TLG+FQ ESSGMR L+ ++PD D++A +L+RPGP+ I + Sbjct: 579 YDDEKVLKMFAKAETLGVFQFESSGMRLFLKELKPDAFSDLVAANALFRPGPMKQIPKFI 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K+ K KI IHP+++P+LK+T G I+YQEQVMQI Q++ GYSL AD++RRA+ KK Sbjct: 639 ESKHDKSKISYIHPILEPILKDTYGCIVYQEQVMQIVQIVGGYSLGRADIVRRAISKKKM 698 Query: 723 EEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 M+++++ FI GA +NG+ + A I++L+ FADY FNKSH+ AY+VI+Y Sbjct: 699 AVMEEERKNFIYGNEKDNVCGAIRNGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVIAY 758 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 ++AW+K +YP EF+AA ++ +++++ + ++ ++ I ++PP+VN +F V + Sbjct: 759 RSAWIKYYYPREFMAAQISTYTSDIKQVSLYIEELKRLGIGLLPPNVNYSQKNFTVEGKK 818 Query: 835 IYYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCS---RVDSKKLNRRVLESLVFAG 889 I + L A+K VG I++A DK F SL DF +V ++ LN++ LESL+ G Sbjct: 819 IRFGLKAVKNVGENLIEAIVQAR-DKLGNFTSLWDFVDKVQKVSAQVLNKKALESLIRCG 877 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 LD F +R Q L + + + Q +N +F + + D L+ FS+ + Sbjct: 878 TLDDFNGNRAQYLAVYEKVMENNQKSIRNNIRGQVTLFGNLNKS-EDLPNLKDFSLRD-- 934 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE------SVATIRGNNIRLAAMVVS 1003 + E+ V+G Y SGHPLD Y+P L E S + I+ +IR+A ++ + Sbjct: 935 -KLNMEKEVIGIYVSGHPLDDYRPALISFSNTNTGEIFESYNSSSLIQNKDIRIAGLLKN 993 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K+ T+ + + + + E FP Sbjct: 994 KKTMITKTNKVMAFASLEDLFGTIELIIFP 1023 >gi|326791665|ref|YP_004309486.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427] gi|326542429|gb|ADZ84288.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM 5427] Length = 1155 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/979 (39%), Positives = 569/979 (58%), Gaps = 45/979 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ +N++LD++ ++AITD +F A++F + A I P Sbjct: 4 NFTHLHVHTEYSLLDGSAKINDLLDRVKELGMDSVAITDHGVMFGAIDFYKAAKQRDINP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVP------SIVLLVSTAEGYQRLIELVSRMYLLD 123 IIGC++ + +T F P +VLL +GYQ LI++VS ++ + Sbjct: 64 IIGCEVYL----------AARTRFDKEPVDARSYHLVLLAENNKGYQNLIKMVSSGFI-E 112 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RL 182 + RI + L+E EGLI L +GP+ R ++ + A+ LT +++ G Sbjct: 113 GFYRRPRIDIELLRE-HHEGLIALGACLAGPVSRRLLNDNYEEAKAAALTLEEIMGKGNF 171 Query: 183 YVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ +Q H D+ + +Q+ ++LA +P+VATN+ ++ +ED H+VL+ + + Sbjct: 172 FLEIQDHGIKDQQKVNQLTLRLAEETGIPIVATNDVHYIKDEDANPHEVLLCIQTGKTME 231 Query: 242 QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +DR YLK+ SEM +F EALENT +IA+RC H LP+F E Sbjct: 232 DEDRMVYEGGQFYLKSPSEMAMLFPYAEEALENTNKIAQRCHVDFTFHELKLPKFDVPEG 291 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 K E LR + GL+ R + +RL++EL +I +M F YFLIV Sbjct: 292 ----KTAETFLRERCYEGLKKRYET-------ITPELEERLEYELGIIIQMGFVDYFLIV 340 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++AK ++IPVGPGRGS AGS+ AY L IT+IDP+++ LLFERFLNP+R+SMPD DI Sbjct: 341 GDFIKYAKDHDIPVGPGRGSAAGSIVAYTLEITNIDPIKYQLLFERFLNPERVSMPDIDI 400 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC +RR EVI YV KYG +RVAQI+TFG+L A+A +RDVGRA+ MPY+ VD++ K+IP Sbjct: 401 DFCYERRQEVIEYVIRKYGADRVAQIVTFGTLAARAVIRDVGRAINMPYADVDKVAKMIP 460 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N+ + +A+ + RE + + LL+ S KLEGL RH+S HAAG+VI ++P+ Sbjct: 461 NELKITIK-KALNMNDELRELYNTNEQIKYLLDTSMKLEGLPRHSSMHAAGVVISNKPVV 519 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 + VP+ + + TQ+ M +E+ GL+K DFLGL+TLT++ ++ + + Sbjct: 520 EYVPL--NASEGVVTTQYPMTTLEELGLLKMDFLGLRTLTVIDNAVKLVKKNHDIDIDIE 577 Query: 601 IPFDDH-ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 D + Y L+ + T GIFQLES+GM+ ++ + P C+EDIIA VSLYRPGP+D I Sbjct: 578 KIDDHDPKVYELIASGNTEGIFQLESAGMKNFMKELAPTCLEDIIAGVSLYRPGPMDFIP 637 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y K I HP ++P+L+ T G I+YQEQVMQI + L+GYSL +D+LRRAMGK Sbjct: 638 KYVQGKRDANSITYTHPALEPILENTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMGK 697 Query: 720 KIKEEMDKQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 K + M+K++E F + G KN I I IF+ + FA Y FNKSHAAAYAV+ Sbjct: 698 KKIDVMNKEREIFLYGDGDSVPGCVKNNIPAEIGNKIFDEMVDFAKYAFNKSHAAAYAVV 757 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTA++KT+Y VEF+AA MT MD KI + + ++ I+++ P +N F Sbjct: 758 AYQTAYLKTYYKVEFMAALMTSVMDVTTKITGYMETCKRMGIEVLSPDINEGHAYFDANG 817 Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 ++I Y LAAIK VG I+E + F SL DF +R++SK N+R +ESL+ AGA Sbjct: 818 DKIIYGLAAIKNVGKNVIDRIVEERQRNGRFKSLTDFYNRMESKDTNKRSIESLILAGAF 877 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSV 950 D G R Q + I KN ++F + DK L +S Sbjct: 878 DHLGGRRSQYMAVYKQIANGINLNRKNNIQGQIDLFGLGSEEVVEDKDHLPDIPEFDSKE 937 Query: 951 RFENEQRVLGFYFSGHPLD 969 E+ V+G Y SGHPLD Sbjct: 938 LLNYEKEVMGIYLSGHPLD 956 >gi|226323536|ref|ZP_03799054.1| hypothetical protein COPCOM_01311 [Coprococcus comes ATCC 27758] gi|225208220|gb|EEG90574.1| hypothetical protein COPCOM_01311 [Coprococcus comes ATCC 27758] Length = 1159 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1060 (36%), Positives = 588/1060 (55%), Gaps = 64/1060 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + + ++ A AITD ++ ++F + A AAGI P Sbjct: 2 NFAHLHVHTEYSLLDGSNKIKEYVARVKELGMTAAAITDHGVMYGVIDFYRAARAAGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC++ + T G+ +VLL GY L+++VSR + +G Sbjct: 62 VLGCEVYVAPGSRFDKTAVGRDE-DRYYHLVLLAENNTGYANLMKIVSRAFT--EGYYYK 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 L E EG+I L+ +G + R + +K L ++++FG ++ LQ Sbjct: 119 PRVDYELLETYHEGIIALSACLAGEVQRNLARGMYEEGKKAALHYEQIFGKGNFFLELQD 178 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H R Q+++L+ + LVATN+ + ED + HD+L+ + ++ +DR R Sbjct: 179 HGIPEQRTVNQQLMRLSQEIGIDLVATNDVHYTYAEDEKPHDILLCLQTGKKLADEDRMR 238 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF----------- 295 +Y+K++ EM ++F PEALENT +IA RC ++ LP+F Sbjct: 239 YEGGQYYVKSKEEMAALFPYAPEALENTQKIADRCHVEIEFGVTKLPKFDVPEGFTSWEY 298 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + K C D K E + A+ +RL++EL VI M + Sbjct: 299 LNKLCFDGLKRRYGEDPDPALV---------------------ERLNYELGVIKSMGYVD 337 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DFI +AK N I VGPGRGS AGS+ AY L IT+IDP+R+ LLFERFLNP+R+SM Sbjct: 338 YFLIVWDFIHFAKSNGIMVGPGRGSAAGSIVAYTLAITNIDPIRYQLLFERFLNPERVSM 397 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DFC +RR EVI YV KYG +RV QI+TFG+LQA+ LRDVGR + +PY+ VD + Sbjct: 398 PDIDVDFCFERRQEVIDYVVRKYGKDRVVQIVTFGTLQARGVLRDVGRVMDLPYAFVDSI 457 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + + +++ + ++ DP V L+++S++LEGL RH S HAAG+VI Sbjct: 458 AKMIPKELNITLD-KSLKMNHELKKLYDEDPQVKELIDMSKRLEGLPRHTSMHAAGVVIS 516 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 + + + VP+ +++ VTQF M +E+ GL+K DFLGL+TLT++Q ++ + + GV Sbjct: 517 QKDVDEYVPLALGADNNV-VTQFTMTTLEELGLLKMDFLGLRTLTVIQDAIRLVEKSTGV 575 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 K+ + ++D + T T GIFQ+ES+GM+ ++ ++P +EDIIA +SLYRPGP Sbjct: 576 KLVTEKLNYNDKAVLDYIGTGKTDGIFQIESAGMKSFMKELRPQSLEDIIAGISLYRPGP 635 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I Y KN E I P + P+L T G I+YQEQVMQI + L+GYSL +D++R Sbjct: 636 MDFIPQYIKGKNHPELITYECPQLKPILAPTYGCIVYQEQVMQIVRDLAGYSLGRSDLVR 695 Query: 715 RAMGKKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 RAM KK + M ++++ F I G KNGI + +A I++ + FA Y FNKSHA Sbjct: 696 RAMSKKKGDVMQRERQNFVYGNEEEGIPGCVKNGIDEKVANKIYDEMIDFAKYAFNKSHA 755 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYAV+SYQTA++K +YPVE++AA MT +DN K+ ++ RQ I I+PP +N Sbjct: 756 AAYAVVSYQTAYLKYYYPVEYMAALMTSVIDNPGKVAEYIYTCRQMGISILPPDINRGVG 815 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885 DF V + I Y LAAIKGVG I+ + F L+DF R+ K++N+R +E+ Sbjct: 816 DFSVDNGNIRYGLAAIKGVGRPVIEQIIRDREEHGTFRDLKDFLERLSGKEVNKRAVENF 875 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLE 941 + +GA D +R Q + I +KN ++F +K F ++TL Sbjct: 876 IKSGAFDSLKGTRKQFMIIYVQIMDQVAQNKKNSLAGQMSLFDIVDDEQKKEF--EVTLP 933 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVAT-IR-GN 993 E+ VLG Y SGHPL+ Y+ RK + + EE+ T +R G+ Sbjct: 934 DVGEYQKETMLAFEKEVLGVYISGHPLEEYEEKWRKSISATTLDFQLDEETGRTKVRDGS 993 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + M+ SK K T+K + ++T + E FP Sbjct: 994 REIIGGMITSKMIKYTKKNQTMAFITVEDLLGTVEVVIFP 1033 >gi|320159593|ref|YP_004172817.1| DNA polymerase III alpha subunit [Anaerolinea thermophila UNI-1] gi|319993446|dbj|BAJ62217.1| DNA polymerase III alpha subunit [Anaerolinea thermophila UNI-1] Length = 1321 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/1053 (37%), Positives = 594/1053 (56%), Gaps = 55/1053 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G + ++ + PA+AITD +F +EF Q A AAGI+P Sbjct: 2 SFAHLHVHTQYSLLDGFSNPKQLVARAKEMGMPAVAITDHGTMFGVIEFFQAATAAGIKP 61 Query: 70 IIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG + + MQD + K+ F ++LL GYQ L+++ S L + Sbjct: 62 IIGLEAYMAARRMQD--RDPKLDKSSF----HLLLLAENQTGYQNLLKIASAAQL-EGFY 114 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 + RI +L E EGLI TG S I A + A K + ++FG + + Sbjct: 115 YNPRIDHDFLAE-HHEGLICTTGCLSAEIPEALKEGDVERARKLADWYYEVFGAENFFFE 173 Query: 186 LQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 LQ H + +R Q+++L + +ATN+ +++ ED DVL+ + ++ Sbjct: 174 LQNHDIPELQAVNR----QLIELGKRYNARFIATNDVHYINPEDARLQDVLLCIQTGNLL 229 Query: 241 SQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 S+ R R++ D YL++ EM +F+D+PEAL NT+ IA RC+ L LPRF E Sbjct: 230 SEPKRFRMSVDTFYLRSPEEMSRLFADIPEALSNTLLIAERCNVDLTSKGYHLPRFPVPE 289 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYF 357 E LR GL R G A D R+RL++EL VI +M F YF Sbjct: 290 G----YTAETYLRELCEQGLRRRY-------GTRADDPVVRERLEYELRVIHQMGFDAYF 338 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV D Q+A++N I RGS AGS+ AY L IT ++P+ L+FERFLNP R+SMPD Sbjct: 339 LIVWDLTQYAQRNGIWYN-ARGSAAGSMVAYVLGITMVEPIEHGLIFERFLNPGRISMPD 397 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D+DF D R ++ Y ++YG ++VAQIITFG+L AKAA+RDVGR + +P ++VDRL K Sbjct: 398 IDLDFQDDLRPRMLEYCASRYGDDKVAQIITFGTLGAKAAIRDVGRVMDIPLAEVDRLSK 457 Query: 478 LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 ++ P V++ +A+ F+ A + L++ + ++EG+ R+A THAAG+VI D Sbjct: 458 MLSTAPNKNVTIREALETVPEFKAAYEEADYLRDLIDTAARMEGVVRNAGTHAAGVVITD 517 Query: 537 RPLSQLVPMYRDVRS--DLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 P+ Q +P++R + P VTQF M IE GL+K DFLGL TLT++Q++ + Q Sbjct: 518 EPIVQYLPLHRPTSGSEESPIKTVTQFEMSIIESLGLLKVDFLGLATLTIMQRACQLIEQ 577 Query: 592 R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 R GV+++L IP DD ETY L T G+FQLE SGM + L M+P ++ +IA+V+LY Sbjct: 578 RHGVRLNLHNIPTDDPETYEFLAQGHTAGVFQLEGSGMTRFLVQMRPQTLDHVIAMVALY 637 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I Y R +G+E + HP ++P+ KET G+ +YQEQ+M+ A L+GY++SE+ Sbjct: 638 RPGPLDFIPTYIRRMHGEEPVQYRHPALEPIFKETYGIPVYQEQIMRAAVELAGYTMSES 697 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D LR+A+ KK K+++ K +E+FI GA + GI + A IF+ +FA YGFNKSHAA Y Sbjct: 698 DELRKAIAKKQKDKLLKHREKFIKGAVQRGIDEETAAAIFDDWEEFARYGFNKSHAADYG 757 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VI+ QTA++K HY E++ A ++ + EK+ + DA+ + ++PP +NT DF + Sbjct: 758 VIAVQTAYLKKHYTAEYMTALLSASKNETEKVAFYVADAKNLGVPVLPPDINTSGWDFTI 817 Query: 831 -----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884 G I + L A+K VG I++A + PF SL DF SRVD + + +R LE Sbjct: 818 EDQPDGKPAIRFGLGAVKNVGQNAVEMILQAREEGGPFQSLTDFASRVDLRSVGKRSLEC 877 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LE 941 L+ GALD FG +R LL+ +D I + + ++ F G D I L Sbjct: 878 LIKVGALDRFG-NRKALLEIMDTILNVSASHFRAVSSGQLTFFGATVGANVDAIENIHLP 936 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAM 1000 + ++ + E E+ ++G Y S HPL+ Y +RK + Y +A +R + + + M Sbjct: 937 FTTSMDTREQLEWERELIGLYVSDHPLNPYWNSMRKR-LSYYSNQLADLRNHTPVSVGGM 995 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V +Q +T+ G + +VT + E FP Sbjct: 996 VTRFRQHQTKNGKPMAFVTLEDLRGPIELVIFP 1028 >gi|301646507|ref|ZP_07246382.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 146-1] gi|301075293|gb|EFK90099.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 146-1] Length = 770 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/787 (44%), Positives = 500/787 (63%), Gaps = 34/787 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAAS 791 EF+AA Sbjct: 764 AEFMAAG 770 >gi|237750345|ref|ZP_04580825.1| DNA polymerase subunit III [Helicobacter bilis ATCC 43879] gi|229373875|gb|EEO24266.1| DNA polymerase subunit III [Helicobacter bilis ATCC 43879] Length = 1268 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1023 (37%), Positives = 599/1023 (58%), Gaps = 78/1023 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L+ + +I ++A+TD N+F A+EF + AGI+PI Sbjct: 9 FTHLHLHTEYSLLDGANKLDVLAKRIKELGMNSVAMTDHGNMFGAIEFYKIMKKAGIKPI 68 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129 IG + I +++L K+P I L EGY+ L+ L S+ ++ QG ++ Sbjct: 69 IGIEAYIHNKEDLG----DKSPNTPKFHICLYAKNEEGYKNLMYLSSQSFI--QGFYRTS 122 Query: 130 RICLSWLQEIGTEGLIM----LTGGSSGPIDRAFFFNSSQVAEKRLL------------- 172 RI L+E ++G+I L G S ++ + + +S + +K ++ Sbjct: 123 RINKKILREY-SKGIICSSACLNGEISWNLNLSPYMDSKKRDKKIIMGAKGYDGAKEAIH 181 Query: 173 TFKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++ +FGD Y+ + RH D R+ ++ +++L+ L+ATN++ + ++ED + Sbjct: 182 EYQDIFGDDFYIEIMRHGIADQRFIDNDLLRLSLETGAKLIATNDAHYTNKEDSSMQEAA 241 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV--- 287 M +A +T ++ R R T + Y+K+ +M+ +F D+PEA+ NT EIA +C + + Sbjct: 242 MMIAMATDINDPKRLRHTVQEFYIKSPKQMLDLFMDIPEAVFNTQEIADKCDLTIDLKDD 301 Query: 288 -HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + P P F E E IQ E E K GL RL Q + K H + Y +R Sbjct: 302 KNPPTPPSFKFAKEYAENEGLTIQDEAEY-FAYKCKQGLVKRLEQ--VEKDKH-EIYHKR 357 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 L E+++I +MKF GY LIV DFI +AK+N IPVGPGRGS AGS+ AY L ITD+DP+++ Sbjct: 358 LQEEIDIITQMKFPGYMLIVWDFINYAKQNKIPVGPGRGSAAGSLVAYCLEITDVDPIKY 417 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 +LLFERFLNP+R+SMPD D DFCQ RR E+ Y++ KYG VAQ+ITFG + A+ +RD Sbjct: 418 NLLFERFLNPERISMPDIDTDFCQRRRPEMFEYMKAKYGEYNVAQVITFGKMLARGVIRD 477 Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512 V R M DR KLIP+ ++L+ + F E A +P + L+ Sbjct: 478 VARIYGMSIPNADRFAKLIPSKLG--ITLKGYNKNGNFIEGAYELEPKIQELITEGDNDR 535 Query: 513 ------------EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSD-LPVTQF 558 E++ +LE L R+ HAA +V+ ++ L VP+Y R+ + VTQ+ Sbjct: 536 DEKNRGLARKVWEMALRLEKLNRNTGKHAAALVVDSEKELWHKVPLYVSERTKGVMVTQY 595 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617 +MK++E LIKFDFLGLKTLT++Q +LD + + ++LS + +D + Y L + T Sbjct: 596 SMKYLEPVDLIKFDFLGLKTLTVIQDALDIIKDTNNIDINLSTLDVNDEKVYRTLRSGNT 655 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIH 675 LGIFQLESSGM++ +QP I+D IAL++L+RPGP+D+ + Y NRK+G+ + Sbjct: 656 LGIFQLESSGMQEFNRRLQPSGIDDAIALLALFRPGPMDSGMSDEYINRKHGRSPVSYTF 715 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 ++P+LK T GVI+YQEQVMQI Q++ G+SL EAD++RRAMGKK + M + + +F G Sbjct: 716 KELEPILKNTYGVIVYQEQVMQIVQVIGGFSLGEADLVRRAMGKKDAQIMAENRTKFADG 775 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A KNG +T A +F+ +AKFA+YGFNKSH+AAY ++++QTA++KT+Y EF+AA ++ E Sbjct: 776 AEKNGFDRTKAEELFDQIAKFAEYGFNKSHSAAYGILTFQTAYLKTYYEHEFMAAMLSSE 835 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTA 850 +E + + +AR I+I+PP VNT +F V G +I + L AIKG G Sbjct: 836 SHKIEAVATYIDEARAMGIEILPPHVNTSQTNFSVIIDSNGKKKIVFGLNAIKGAGEGAL 895 Query: 851 RHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + I++ K F +LEDF ++ D K+++++VLE LV +G+LD GY+R +L +LD I Sbjct: 896 QSIIDDRKQKGAFKNLEDFITKADFKRISKKVLEPLVKSGSLDNLGYTRASMLDNLDYIC 955 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + + + R+ +F E+ ++ ++ ++ E E LG Y SGHPLD Sbjct: 956 DLGRRMSRERSGG--GLFGAEE--LCPELQIKPLPELHNKSLLEYEYESLGIYLSGHPLD 1011 Query: 970 VYK 972 ++ Sbjct: 1012 DFR 1014 >gi|45644755|gb|AAS73143.1| predicted DNA polymerase III, alpha subunit [uncultured marine gamma proteobacterium EBAC20E09] Length = 1148 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/1026 (36%), Positives = 607/1026 (59%), Gaps = 43/1026 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL+V S +S+ +G L+++ I++ + P++A+TD +N+F ++F K + GI+PI Sbjct: 5 FSHLRVSSEFSISQGLLTIDQIVENASRLSMPSVALTDKSNMFGMVKFFNKCESVGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G + + K I+ L T G++ L++++S + S Sbjct: 65 SGVTIRTIFDGDDKSY-----------EILCLAKTNIGHKNLMKIISNAH----NSNSFN 109 Query: 131 ICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + + ++ + + +++++GG I N+ + A K++ F++ FGD + +QR Sbjct: 110 VPIIKFDDLISLKDDILIISGGRGTHIFEYLKINNFEDANKKIDKFRESFGDDFILEVQR 169 Query: 189 HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D ++ ++Y +PL+ATN+ LF S++DY+ H+ + + ++ +R + Sbjct: 170 TNRSDELEYFKNILPISYEKNIPLIATNDVLFSSQDDYDTHETKVCINTGKTLNDPNREK 229 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKECDDI 303 + D Y K+ EM +F+D ++NT EI+++C+ L LP + E + D Sbjct: 230 LFSDQQYFKSSKEMSLLFNDYSSLVDNTNEISKKCNVSLSTKGYFLPEYPVPKEHDFDSF 289 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 K+ ++ N ++GL AK +Y+ RL++EL+ I +M FS YFLIV DF Sbjct: 290 IKKLSSDRLNTLISGL---------AKD-KQDEYKSRLNYELDQIKKMGFSSYFLIVYDF 339 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K N++PVGPGRGSGAGS+ AYAL IT +DP++ LLFERFLNP+R+SMPDFD+DFC Sbjct: 340 IEWSKNNDVPVGPGRGSGAGSLVAYALGITTLDPIKHGLLFERFLNPERLSMPDFDVDFC 399 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI YV KYG E V+QI TFG++ A+A +RDV RAL P+ DR+ K+IP P Sbjct: 400 MEKRDLVIDYVSQKYGSEAVSQIATFGTMAARAVIRDVTRALGKPHPLGDRIAKMIPFTP 459 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + QA + F E + V +++++ KLEG+ R+ HA G+VI +S Sbjct: 460 GITLD-QAKKEQPLFAETIRKEDEVREIVDLAYKLEGIARNVGKHAGGVVIAPGSISDFC 518 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDLSL 600 P+Y D SD +TQ++ +EK GL+KFDFLGL+TLT++ KS++ K+DL+ Sbjct: 519 PVYVDRSSDSIMTQYDKDDVEKIGLVKFDFLGLRTLTVIDRAVKSINEDLDEFNKLDLNK 578 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659 IP DD + L++ T +FQLESSGMR ++ ++P E+I AL++LYRPGP+++ + Sbjct: 579 IPLDDKNVFKFLSSGKTTAVFQLESSGMRDLIKRLKPTKFEEITALLALYRPGPLNSGMH 638 Query: 660 -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + +RK+G + H L++P+L+ET GVI+YQEQVM+ A++L+G+SL +AD+LRRAMG Sbjct: 639 DEFVDRKHGNSPVTYPHKLLEPILEETYGVIVYQEQVMEAARVLAGFSLGQADILRRAMG 698 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK KEEM++Q+E F++G +KN IS + A +IF L+ +FA+YGFNKSH+AAYA+ISYQTA+ Sbjct: 699 KKKKEEMEEQREIFVNGCAKNDISTSNAEHIFNLINQFAEYGFNKSHSAAYALISYQTAY 758 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYY 837 +KT+YP F+A+ ++ E+ N +KI Q+ + NI+++ P++ F V N+ I Y Sbjct: 759 LKTYYPEYFMASVLSSELSNTDKIYSLIQECSRMNIKVLKPNILLGKKRFFVNANKEIEY 818 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIKGV ++ H+ E A +L DF ++D K ++ LE+L ++GA D + Sbjct: 819 GLGAIKGVASSFIDHVCEKRASIKLRNLWDFSQKIDIKLGGKKSLEALSYSGAFDSLAPT 878 Query: 898 RMQLLQSL-DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R ++ + D ++ A KN K ++FA + F + + + E E+ Sbjct: 879 RNVAIECVKDMVRDGANRSAKNNL-KSGDLFAQVEEDFDPYEKFKDLPKLKLTEKLEFEK 937 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 + LG+Y SGHP+ + ++ + ++ T L ++ + +Q K RKG + Sbjct: 938 KSLGYYLSGHPVLAIENKIKNLRTLAIQQ--VTNDTQKASLVCLINNVRQIKDRKGQPLI 995 Query: 1017 WVTFSE 1022 +V FS+ Sbjct: 996 FVNFSD 1001 >gi|288819165|ref|YP_003433513.1| DNA polymerase III alpha subunit [Hydrogenobacter thermophilus TK-6] gi|288788565|dbj|BAI70312.1| DNA polymerase III alpha subunit [Hydrogenobacter thermophilus TK-6] Length = 1155 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1052 (38%), Positives = 594/1052 (56%), Gaps = 93/1052 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA+ + ++ K A+AITD NLF LEF + GI+PI Sbjct: 4 FVHLHLHTQYSLLDGAIKIKDLAKKARELGYKAVAITDHGNLFGILEFYRSMKKEGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVSRMYLLDQG 125 IG ++ + +GK + ++L+ G + L++L S Y +G Sbjct: 64 IG--MEAYFTTGSRHDRKGKASEDNITDRYNHHLILIAMNDTGLKNLMQLSSISY--QEG 119 Query: 126 -KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI L + EGLI +T G + A + FK LFG+ LY+ Sbjct: 120 FYYKPRIDYEVLSQ-HCEGLIAITACLKGVPTHYASLGDEEKATHWVKKFKDLFGENLYL 178 Query: 185 NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ ++ ++ +++ + +A + L+ATN+S +L+ +D AH VLMAV + + Sbjct: 179 ELQSNQLPEQEIANRILINIAKKMGVKLIATNDSHYLNPDDRLAHQVLMAVQMKKTLME- 237 Query: 244 DRPRVTPDHYLKNRSEMVSI-------------FSDLPEALENTVEIARRC--SF-ILQV 287 + + +K +E + F EAL+NT+E+A + SF +L+ Sbjct: 238 ----IKQESAIKCSNEGLHFAGPEEVWEKFKGKFEGWEEALKNTLEVAEKVQDSFELLEN 293 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 + P++ D K LR+ AV GL R+ QG +AK + +Y RL++EL V Sbjct: 294 RGYLFPKY-----DTEDKTTAEFLRHLAVKGLRQRIQQG-LAK--DSPEYWNRLEYELEV 345 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 + RM F GYFLIV DFI WAK +IPVGPGRGS AGS+ A++L ITDIDP++ LLFERF Sbjct: 346 VFRMGFEGYFLIVQDFINWAKSQSIPVGPGRGSAAGSLLAFSLGITDIDPIKHGLLFERF 405 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPD D+DFC ++RD+VI YV++KYG E VAQIIT+ ++AK LRDV RAL + Sbjct: 406 LNPERISMPDIDVDFCMEKRDKVIEYVKSKYGEENVAQIITYNVMKAKQTLRDVARALGV 465 Query: 468 PYSQVDRLCKLIPN----------DPAHPVSLQAIADD------------SRFREARLAD 505 PYS D L KLIP + + V ++ + D S+FR+ + Sbjct: 466 PYSVADSLAKLIPQGDVQGTWLSLEEMYLVPIKELLDKYGHHRRDIEDHVSKFRKMCSEN 525 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P + L+EI+ KLEGL RH S HAAG+VI PL + +P+Y D + + TQF+M +E+ Sbjct: 526 PEIKTLVEIALKLEGLTRHTSLHAAGVVISPLPLRERIPLYYD-KDQVLATQFDMVNLEE 584 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTLT L++ + +R V ++ +P DD Y LL T G+FQLE Sbjct: 585 LGLIKMDFLGLKTLTELERMKQLVEERHKVSINYLSLPLDDPLVYELLRKGNTTGVFQLE 644 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPML 682 S GM+ L+ ++PD +DI+A+++LYRPGP+ + +V Y NRK+GKE++ I P ++P+L Sbjct: 645 SVGMKNLLKRLEPDSFDDIVAVLALYRPGPLKSGLVDSYINRKHGKEQVDYIFPELEPVL 704 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 K+T G+I+YQEQVM+I+Q+L+G++ +AD LR+A+GKK KE M + KE+FI GA + G + Sbjct: 705 KDTYGIIVYQEQVMKISQVLAGFTPGQADTLRKAIGKKKKEVMQEMKEKFIRGALERGYN 764 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 + + ++ + +FA Y FNKSH+ AY ISY TA+MK HYP EF ++ E + +K Sbjct: 765 QEKVIKLWNDIEEFASYSFNKSHSVAYGYISYWTAYMKAHYPEEFFVVKLSTEKSD-KKF 823 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861 +DA+ F +I+ P +N VDF + +I + LA IKGVG TAR I+EA + Sbjct: 824 INLIKDAKSFGFEILQPDINESHVDFTIESKGKIRFGLARIKGVGEDTARSIVEARNGR- 882 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + L DF +D +K+N+RVLE+L+ AGA D G SR +LL +D K Sbjct: 883 WKGLGDFLKSIDQRKVNKRVLEALIKAGAFDFTGESREKLLSYMDKASK----------- 931 Query: 922 KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 G L VE + E+ VLG Y S HP+D ++ +L G Sbjct: 932 ----------GGVLPLGDLFGTKVEQKVDPLKYEKEVLGIYISKHPVDPFEKLLS--GKV 979 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 + E + ++ +V + KKT+ G+ Sbjct: 980 KWLEELEELQEGTYNFVGVVSDLKVKKTKNGT 1011 >gi|224438383|ref|ZP_03659310.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818] gi|313144825|ref|ZP_07807018.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818] gi|313129856|gb|EFR47473.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818] Length = 1144 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1039 (36%), Positives = 593/1039 (57%), Gaps = 73/1039 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL +H+ YSLL+GA + N+ +I ++A+TD N+F AL+F G+ P Sbjct: 2 NFTHLHLHTEYSLLDGANKIKNLAKRIRELGMESVAVTDHGNMFGALDFYVSMKEEGLNP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + I D L K F + L GY+ L+ L S+ ++ + Sbjct: 62 IIGMEAYIHNGDELN-DKSIKQRF----HLCLFAKNEVGYKNLMYLSSQAFI-NGFYYYP 115 Query: 130 RICLSWLQEIGTEGLIMLTG----------GSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 RI L+E +EGL+ + ++ P + F ++A++ L +K +FG Sbjct: 116 RINKRLLRE-RSEGLVCSSACLQGEVNWQLNTNNPRNVQFGAKGYEMAKEVALEYKDIFG 174 Query: 180 DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y+ + RH D+ + + Q+++L ++ ++ATN++ + ++D +A ++ M VA Sbjct: 175 EDFYLEIMRHGINDQLFLDEQILRLGRELDIKVIATNDTHYTFQKDAKAQEIAMCVAMGK 234 Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---------- 287 ++ KDR + + + Y+K+ +M +F D+PE LENT EIA++C L + Sbjct: 235 TLNDKDRLKHSVKEFYVKSPQQMAQLFLDVPEVLENTQEIAQKCRLNLNLKNIEIKNKHT 294 Query: 288 ------HAPILPRFIEKECDDIQKEEENELRN--------------KAVAGLEVRLAQGA 327 H+P P ++ + +KE ++ N K GL+ RL Sbjct: 295 GEVILEHSPATPPNFKRTQEYAKKENLPQILNCELESIDDAAYFAFKCREGLKERLEH-- 352 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387 IA+ H Q Y+ RL+ E+ +I MKF GY LIV DF+ +AK+N IPVGPGRGS AGS+ A Sbjct: 353 IAESKH-QTYKDRLEREIEIINSMKFPGYMLIVWDFVNFAKQNGIPVGPGRGSAAGSLVA 411 Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 YAL IT+IDPL++ LLFERFLNP+R+SMPD D+DF Q+RR E+I YV N YG VAQ++ Sbjct: 412 YALKITNIDPLKYDLLFERFLNPERVSMPDIDMDFSQERRQELIEYVSNTYGKFNVAQVV 471 Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507 TF SL AK +RDV R L MP D KLIPN+ ++ QA D A +P Sbjct: 472 TFNSLLAKGVIRDVARVLDMPLKDADGFAKLIPNELGITLTKQAGKDGKEKDGAWEKEPK 531 Query: 508 VDRLLE----------ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVT 556 + L+E + LEGL R+ HAA IVI + L VP+Y + + + Sbjct: 532 IKELVERNPLAKQVWDYAVLLEGLKRNTGLHAAAIVIDSNDELWNKVPLYTNDKMNGVAV 591 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615 Q++M W+E LIKFDFLGLKTL ++ ++ + +R GV +D S + +D + Y + + Sbjct: 592 QYSMNWLEPVDLIKFDFLGLKTLDVISDAIKLVKKRYGVDIDFSTMDMEDSKVYETIQSG 651 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS 673 TLG+FQ+ES GM+ + ++P EDIIA+++LYRPGP+++ ++ + NRK+G I Sbjct: 652 STLGLFQIESEGMQALAKRLKPSNFEDIIAMLALYRPGPMESGMLDDFVNRKHGLASITY 711 Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733 ++P+LK T GVI+YQEQVMQI Q + G+SL AD++RRAMGKK +EM + K+ F Sbjct: 712 AFNALEPILKPTYGVIVYQEQVMQIVQTIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFA 771 Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793 GA K G ++T A +++EL+ KFA YGFNKSH+AAYA+I+YQTA++KT+Y EF+AA +T Sbjct: 772 DGAEKQGYNRTKAEDLWELIVKFAGYGFNKSHSAAYAMITYQTAYLKTYYEHEFMAAMLT 831 Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTT 849 E VE + K+ + + I+I+PP +N DF VG+ +I + L+AIKG+G + Sbjct: 832 SETRKVESVAKYINEVKSLGIEIIPPHINISENDFGVGEFDGVKKIIFGLSAIKGLGESP 891 Query: 850 ARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 +I+ + + + ++EDF +RVD K+ +R LE L+ +G LD G+SR +L+++D + Sbjct: 892 IENIITDREKNGEYKNVEDFIARVDFSKMTKRSLEPLIKSGGLDGLGFSRHTMLENIDLL 951 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 + +K ++F + + ++ + + E +G Y SGHPL Sbjct: 952 CDKGREKDKAHEMMSNSLFGEGGVEINVHLPIQDKPEYDIRTLLDYEYECMGIYISGHPL 1011 Query: 969 DVYKPILRKMGIKGYEESV 987 D +K L K IKG +SV Sbjct: 1012 DDFKEKLDK--IKGVVKSV 1028 >gi|308752748|gb|ADO46231.1| DNA polymerase III, alpha subunit [Hydrogenobacter thermophilus TK-6] Length = 1158 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1052 (38%), Positives = 594/1052 (56%), Gaps = 93/1052 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA+ + ++ K A+AITD NLF LEF + GI+PI Sbjct: 7 FVHLHLHTQYSLLDGAIKIKDLAKKARELGYKAVAITDHGNLFGILEFYRSMKKEGIKPI 66 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVSRMYLLDQG 125 IG ++ + +GK + ++L+ G + L++L S Y +G Sbjct: 67 IG--MEAYFTTGSRHDRKGKASEDNITDRYNHHLILIAMNDTGLKNLMQLSSISY--QEG 122 Query: 126 -KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI L + EGLI +T G + A + FK LFG+ LY+ Sbjct: 123 FYYKPRIDYEVLSQ-HCEGLIAITACLKGVPTHYASLGDEEKATHWVKKFKDLFGENLYL 181 Query: 185 NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ ++ ++ +++ + +A + L+ATN+S +L+ +D AH VLMAV + + Sbjct: 182 ELQSNQLPEQEIANRILINIAKKMGVKLIATNDSHYLNPDDRLAHQVLMAVQMKKTLME- 240 Query: 244 DRPRVTPDHYLKNRSEMVSI-------------FSDLPEALENTVEIARRC--SF-ILQV 287 + + +K +E + F EAL+NT+E+A + SF +L+ Sbjct: 241 ----IKQESAIKCSNEGLHFAGPEEVWEKFKGKFEGWEEALKNTLEVAEKVQDSFELLEN 296 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 + P++ D K LR+ AV GL R+ QG +AK + +Y RL++EL V Sbjct: 297 RGYLFPKY-----DTEDKTTAEFLRHLAVKGLRQRIQQG-LAK--DSPEYWNRLEYELEV 348 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 + RM F GYFLIV DFI WAK +IPVGPGRGS AGS+ A++L ITDIDP++ LLFERF Sbjct: 349 VFRMGFEGYFLIVQDFINWAKSQSIPVGPGRGSAAGSLLAFSLGITDIDPIKHGLLFERF 408 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPD D+DFC ++RD+VI YV++KYG E VAQIIT+ ++AK LRDV RAL + Sbjct: 409 LNPERISMPDIDVDFCMEKRDKVIEYVKSKYGEENVAQIITYNVMKAKQTLRDVARALGV 468 Query: 468 PYSQVDRLCKLIPN----------DPAHPVSLQAIADD------------SRFREARLAD 505 PYS D L KLIP + + V ++ + D S+FR+ + Sbjct: 469 PYSVADSLAKLIPQGDVQGTWLSLEEMYLVPIKELLDKYGHHRRDIEDHVSKFRKMCSEN 528 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P + L+EI+ KLEGL RH S HAAG+VI PL + +P+Y D + + TQF+M +E+ Sbjct: 529 PEIKTLVEIALKLEGLTRHTSLHAAGVVISPLPLRERIPLYYD-KDQVLATQFDMVNLEE 587 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTLT L++ + +R V ++ +P DD Y LL T G+FQLE Sbjct: 588 LGLIKMDFLGLKTLTELERMKQLVEERHKVSINYLSLPLDDPLVYELLRKGNTTGVFQLE 647 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPML 682 S GM+ L+ ++PD +DI+A+++LYRPGP+ + +V Y NRK+GKE++ I P ++P+L Sbjct: 648 SVGMKNLLKRLEPDSFDDIVAVLALYRPGPLKSGLVDSYINRKHGKEQVDYIFPELEPVL 707 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 K+T G+I+YQEQVM+I+Q+L+G++ +AD LR+A+GKK KE M + KE+FI GA + G + Sbjct: 708 KDTYGIIVYQEQVMKISQVLAGFTPGQADTLRKAIGKKKKEVMQEMKEKFIRGALERGYN 767 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 + + ++ + +FA Y FNKSH+ AY ISY TA+MK HYP EF ++ E + +K Sbjct: 768 QEKVIKLWNDIEEFASYSFNKSHSVAYGYISYWTAYMKAHYPEEFFVVKLSTEKSD-KKF 826 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861 +DA+ F +I+ P +N VDF + +I + LA IKGVG TAR I+EA + Sbjct: 827 INLIKDAKSFGFEILQPDINESHVDFTIESKGKIRFGLARIKGVGEDTARSIVEARNGR- 885 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + L DF +D +K+N+RVLE+L+ AGA D G SR +LL +D K Sbjct: 886 WKGLGDFLKSIDQRKVNKRVLEALIKAGAFDFTGESREKLLSYMDKASK----------- 934 Query: 922 KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 G L VE + E+ VLG Y S HP+D ++ +L G Sbjct: 935 ----------GGVLPLGDLFGTKVEQKVDPLKYEKEVLGIYISKHPVDPFEKLLS--GKV 982 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 + E + ++ +V + KKT+ G+ Sbjct: 983 KWLEELEELQEGTYNFVGVVSDLKVKKTKNGT 1014 >gi|325996713|gb|ADZ52118.1| DNA polymerase III alpha subunit [Helicobacter pylori 2018] gi|325998307|gb|ADZ50515.1| DNA polymerase III alpha subunit [Helicobacter pylori 2017] Length = 1211 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1040 (37%), Positives = 598/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ LI +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLI-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F ++E D + ++ + +KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAKEEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YKERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNEIAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHKIGVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N DF V + +I + L AIKGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINYSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RTKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F +G +++ L+ + ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|291542868|emb|CBL15978.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus bromii L2-63] Length = 1174 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/1048 (35%), Positives = 581/1048 (55%), Gaps = 46/1048 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL +H+ YSLL+GA L+ + A+AITD ++ A++F ++ GI+P Sbjct: 2 AFTHLHLHTEYSLLDGACRLSRLAKAAKEKGMTALAITDHGVMYGAVDFYKECKKQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + Q T + + +VLL GYQ LI+LVS+ + + Sbjct: 62 IIGCEVYVAPQSRFDKT----SSYGKYYHMVLLCKNHTGYQNLIKLVSKGFT-EGFYTKP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L E EGL+ L+ +G I + A+ + ++ +FG + ++ LQ Sbjct: 117 RIDDELLAEY-HEGLVCLSACLAGEIPQKLLDGDYAGAKSKAEFYRDIFGSENFFIELQD 175 Query: 189 HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R ++++A + +VATN+ ++ ++D H++L+ + + V+ DR Sbjct: 176 HGIEEQKRIIPSLIKIAREIGVDIVATNDCHYIEKQDSTVHNILLCIQTNRTVNDSDRME 235 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + YLK EM +F+ PEA++NT +IA C+ + LPRF D+ Sbjct: 236 FKTSEFYLKTEDEMREVFASYPEAIDNTQKIADMCNVDFEFGVRKLPRF------DVPNN 289 Query: 307 EEN--ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E++ R K GL + Q RL++E+N +++M F Y+LIV DF+ Sbjct: 290 EDHLHYFRRKCYEGLYKHYGENP------DQSLIDRLEYEINTVSQMGFVDYYLIVNDFV 343 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +AK IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFD+DFC+ Sbjct: 344 SYAKSCQIPVGPGRGSGAGSLCAYCIGITAIDPIKYNLLFERFLNPERVSMPDFDVDFCK 403 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV KYG + VAQII+FG++ A+ A+RDVGR L++PY+ VD + KL+P + Sbjct: 404 ERRGEVIDYVVRKYGEDHVAQIISFGTMAARGAIRDVGRVLEIPYATVDSVAKLVPME-- 461 Query: 485 HPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 H +++ +A+ R DP + +LL+++ +EG+ RHA+ HAAG+VI D+P+S V Sbjct: 462 HDMTIEEALKLSPNLRSRCNNDPQIKKLLDVAMSIEGMPRHATMHAAGVVITDKPVSDYV 521 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+ ++ D VTQF M +E+ GL+K DFLGL+ LT++ + + + + ++ Sbjct: 522 PLSKN--DDNVVTQFTMTALEELGLLKMDFLGLRNLTVINDAEKQIKHKNPDYNPDMVDE 579 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D + + + + T G+FQ ES GM+ L ++P+ IED+IA+ +LYRPGP+D+I VY + Sbjct: 580 NDKKVFEMFSKGYTEGVFQFESQGMKNVLTQLKPERIEDLIAVTALYRPGPMDSIPVYID 639 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 ++ I HPL+ +L T G IIYQEQVMQI + L+GYSL AD++RRAM KK Sbjct: 640 CRHNPSHIRYKHPLLKEILGVTSGCIIYQEQVMQIFRTLAGYSLGRADIVRRAMSKKKLA 699 Query: 724 EMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 M+ ++E FI G + + G+ + A+++++ + FA Y FNKSHAAAYA Sbjct: 700 VMESEREIFIHGLTDDDGNIIVEGCIRRGVDEKTAISVYDEMESFAHYAFNKSHAAAYAN 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISY+TAW+K HYP E++AA ++ +DN K+ + + ++ I+++PP+VN + F V Sbjct: 760 ISYKTAWLKCHYPREYMAALLSSVLDNQNKLASYITECKRLGIRVLPPNVNESNLHFTVS 819 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 N I Y L A+K +G I+ + P++ DFC R+ + +N R +ESL+ GA Sbjct: 820 GNDIRYGLLAVKNLGRNFIDEIISERINNPYEDFFDFCKRLYGRNMNSRAIESLIKCGAF 879 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSV 950 D G +R QLL + ++ + + F E S K + S Sbjct: 880 DGLGANRRQLLAISKTVLDDVEYESRRNAGGQMSFFDDAEVDAQSSKPKIPDLPEFPVSE 939 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILR-----KMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 E + G Y SGHPLD Y + K G +S G + L +V + Sbjct: 940 LLHMENEIAGMYLSGHPLDEYTTFSKAIHSDKTGDIINNDSGMYFDGKKVNLVCIVAKLK 999 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + T+ + +V + E FP Sbjct: 1000 TQLTKNNRIMAFVNAEDRYGMLEIVIFP 1027 >gi|225572766|ref|ZP_03781521.1| hypothetical protein RUMHYD_00957 [Blautia hydrogenotrophica DSM 10507] gi|225039823|gb|EEG50069.1| hypothetical protein RUMHYD_00957 [Blautia hydrogenotrophica DSM 10507] Length = 1156 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1057 (36%), Positives = 597/1057 (56%), Gaps = 60/1057 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + ++++ + AITD ++ ++F + AAGI P Sbjct: 2 NFTHLHVHTEYSLLDGSNKITEYVERVKELGMDSAAITDHGVMYGCIDFYRACKAAGINP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+GC++ + + T G+ + +VLL +GY L+++VS+ ++ + Sbjct: 62 ILGCEVYVAPSSRFDRETGAGEDRYY---HLVLLAENNQGYSNLMKIVSKSFV-EGFYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 R+ L+ L+E EG+I L+ +G + R + +K L ++++FG ++ LQ Sbjct: 118 PRVDLALLREY-HEGIIALSACLAGEVARYLTRGMYEEGKKAALRYEEIFGKGNFFLELQ 176 Query: 188 RHRGYDRYRESQVVQLAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 H + +Q QL H+ + LVATN+ + ED HD+L+ + +S ++ Sbjct: 177 DHGISQQQTVNQ--QLLRMHQETGIDLVATNDVHYTYAEDEAPHDILLCIQTGKKLSDEN 234 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R V +Y+K+ +M +F EALENT +I +RC ++ LP++ D Sbjct: 235 RMRYVGGQYYVKSAEQMAELFPYALEALENTYKIGQRCHVDIEFGVTKLPKY-----DVP 289 Query: 304 QKEEENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E NK GLE R ++ RQRL +EL+ I M + YFLIV D Sbjct: 290 EGYTSWEYLNKLCFEGLEERYQP-------VTEELRQRLSYELDTIKNMGYVDYFLIVWD 342 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI++A+ + I VGPGRGS AGS+ +Y L IT +DP+R+ LLFERFLNP+R+SMPD D+DF Sbjct: 343 FIKYARDHGIMVGPGRGSAAGSLVSYTLGITKLDPMRYDLLFERFLNPERVSMPDIDVDF 402 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV KYG +RV QI+TFG+L A+ +RDVGR L MPYSQVD + K+IP + Sbjct: 403 CFERRQEVIDYVVKKYGKDRVVQIVTFGTLAARGVIRDVGRVLDMPYSQVDTIAKMIPTE 462 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + L A+ + + DP + L++++++LEGL RH S HAAG+VI + + + Sbjct: 463 LNITIDL-ALKKNPELAKVYEEDPEIHHLIDMAKRLEGLPRHTSMHAAGVVISQKDVDEY 521 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601 VP+ R TQF M +E+ GL+K DFLGL+TLT++Q +++ + A +G+ +D+ I Sbjct: 522 VPLSR-AADGTITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVELVEADKGIHLDMDAI 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 ++D + L T T G+FQLES GM+ ++ ++P +ED+IA +SLYRPGP+D I Y Sbjct: 581 DYNDPKVLDSLGTGHTDGVFQLESGGMKSFMKELKPQSLEDVIAGISLYRPGPMDFIPQY 640 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 KN E I P ++P+LK T G I+YQEQVMQI + L GY+L +D+LRRAM KK Sbjct: 641 IRGKNHPETITYDCPQLEPILKATYGCIVYQEQVMQIVRNLGGYTLGRSDLLRRAMSKKK 700 Query: 722 KEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 M+K+++ F+ G + NGI + IA I++ + FA Y FNKSHAAAYAV+S Sbjct: 701 ASVMEKERQSFVYGNEEEGVPGCINNGIDEKIANRIYDNMIDFAKYAFNKSHAAAYAVVS 760 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K +YPVEF+AA MT +DN K+ ++ R+ IQI+PP +N F V Sbjct: 761 YQTAFLKYYYPVEFMAALMTSVIDNPGKVSEYIFTCRKMGIQILPPDINRGETVFSVDHG 820 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y+LAAIK +G + I+ E + F S++DF +R+++K +N+R LE+ + AGA D Sbjct: 821 AIRYALAAIKSIGKSVIDEIVKERKTNGEFVSMKDFVTRINNKDINKRSLENFIKAGAFD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSV 950 C +R Q + + + A +KN ++F E+ +I L K + Sbjct: 881 CLEGNRRQQMMVYPLVMESAIQEKKNMMAGQMSLFDLVGEEDKKDYEIQLPKVEEYDQDT 940 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRK--------------MGIKGYEESVATIRGNNIR 996 E+ VLG Y SGHPL+ Y+ ++ K G ++ V I G Sbjct: 941 LLNFEKEVLGIYISGHPLEKYRALMEKNVTAWTSDFQPDEETGFPKVKDGVKAIIG---- 996 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ K+ K TR + ++T + E FP Sbjct: 997 --GMITEKKVKYTRTNKVMAFLTLEDLVGIVEVVVFP 1031 >gi|300949784|ref|ZP_07163758.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 116-1] gi|300450816|gb|EFK14436.1| putative DNA polymerase III subunit alpha [Escherichia coli MS 116-1] Length = 788 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/787 (43%), Positives = 499/787 (63%), Gaps = 34/787 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAAS 791 EF+A Sbjct: 764 AEFMAGG 770 >gi|145652210|gb|ABP88150.1| putative DnaE [Borrelia lonestari] Length = 1072 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/928 (39%), Positives = 559/928 (60%), Gaps = 34/928 (3%) Query: 99 IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158 ++LL GY+ L++L S YL + RI S +++ ++GLI + G I + Sbjct: 18 LILLAKNELGYKNLLKLTSISYL-EGFYYRPRIDKSDIEKY-SKGLICTSACIGGIIPQL 75 Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHEL--PLVATNN 216 A+ +L FK +FGD Y+ LQRH G + + Y+ EL PL +N+ Sbjct: 76 IIAGRFDDAKNEILWFKTVFGDDFYLELQRH-GIKQQDMVNKKLIGYSKELNVPLTVSND 134 Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTV 275 S ++++ED +A D+++ + + ++ +R ++ D Y+K++ EM +F DLPEAL NT+ Sbjct: 135 SHYVNKEDAKAQDIIICIGTGSKINDPNRLKMETDEFYIKSQEEMYELFKDLPEALANTL 194 Query: 276 EIARRCS-FILQVHAPILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 EIA +C F ++ PI P + I E + + L GL+ R Sbjct: 195 EIAEKCDEFEIKFPGPIFPEYQIPSEFSTLGQY----LEYLTFEGLKFRYDN-------I 243 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 ++R +EL+ I +M F YFLIV DFI++A N IPVGPGRGSGAGS+ AYAL +T Sbjct: 244 NDSIKERALYELSTIIKMGFEAYFLIVWDFIKFAHDNGIPVGPGRGSGAGSIVAYALRVT 303 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 DIDPL+++LLFERFLNP+R+SMPDFDIDFC + RDEVI+YV +KYG +RVAQIITFG+L+ Sbjct: 304 DIDPLKYNLLFERFLNPERVSMPDFDIDFCFEGRDEVIKYVTSKYGEDRVAQIITFGTLK 363 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV-DRLL 512 KA +DVGR L +P+S+ + + KLIP+ P V L+ + D R A L S+ + L+ Sbjct: 364 PKAVFKDVGRVLDIPFSESNEITKLIPDGPK--VCLKEVFADGALR-AYLNKGSIYNELM 420 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + LEG+ RH STHAAGIVI L+ VP+Y+D + + TQ+ M +E GL+K D Sbjct: 421 NAALVLEGMNRHVSTHAAGIVIAKTALTDYVPLYKDYKQNTVSTQYTMDLLEDCGLVKMD 480 Query: 573 FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 FLGLKTLTL++ + + ++ I D +T+ +L + +FQ ES GM+Q L Sbjct: 481 FLGLKTLTLIKNAEKLIRITNPDFSIANISDSDPKTFKMLAEGRSASVFQFESEGMQQVL 540 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 +PD IED+IAL +LYRPGP+ I + + K G ++I HP + +LK T GVI+YQ Sbjct: 541 REAKPDSIEDLIALNALYRPGPMQFIPQFISAKTGIKRIKYPHPDLKDVLKPTYGVIVYQ 600 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM++A++++G+SL +AD+LRRAMGKK ++EM++ K FI GA G +++A++IFEL Sbjct: 601 EQVMEVAKIIAGFSLGKADILRRAMGKKKEDEMNRMKVDFIKGAISKGYDESLAIDIFEL 660 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L FA+YGFNKSHAAAY++I+YQTA++K +YP F+AA++T E++N EK+ + ++A+ Sbjct: 661 LKPFANYGFNKSHAAAYSLIAYQTAYLKANYPENFMAANLTNEINNTEKLSYYIEEAKLM 720 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871 I ++ P +N +F+V D +I Y L IK +G + I+ E + + S EDF R Sbjct: 721 GIDVLKPDINQSFKEFRVVDCKISYGLNGIKNIGGSMVDLIIAERQKNSEYKSFEDFVRR 780 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928 VD K +N++ LES + +G D G +R L ++LD + + +R ++F+ Sbjct: 781 VDDKVINKKFLESAIKSGLFDSLGQNRRTLFENLDRLIDVVTQDKNDRKFGQNSLFSIFG 840 Query: 929 ---HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 +FS I E +E + FE E +LGFY SGHPLD YK + E Sbjct: 841 PQDVAYKSFSYDIFEEYSYIE--LLGFEKE--LLGFYVSGHPLDPYKTEIECFTDFNILE 896 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 +A + + ++ A ++ S + T++ + Sbjct: 897 DLAIKKDSTVKFAGILNSIRVIHTKRNN 924 >gi|109946747|ref|YP_663975.1| DNA polymerase III subunit alpha [Helicobacter acinonychis str. Sheeba] gi|109713968|emb|CAJ98976.1| DNA polymerase III, alpha chain [Helicobacter acinonychis str. Sheeba] Length = 1209 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/1088 (36%), Positives = 617/1088 (56%), Gaps = 82/1088 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKETKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSMTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLMYLSSMAYL--E 113 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ----------VAEKRLLT 173 G RI L+E ++G+I + G ++ NS + A+K Sbjct: 114 GFYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNSERNRRYGAKGYDEAKKIACE 172 Query: 174 FKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 ++++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 173 YQEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAM 232 Query: 233 AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---- 287 VA ++ + R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 233 CVAMGKTLNDQGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDK 292 Query: 288 -HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + P P F + E D + ++ + +KA GL+ RL + K H Q YR+R Sbjct: 293 KNPPTPPSFKFTKTYAQNEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHEQ-YRER 348 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 L+ E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 349 LEKEIEVITNMKFPGYMLIVWDFIRYAKERGIPVGPGRGSAAGSLVAFALKITDIDPLKY 408 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RD Sbjct: 409 DLLFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRD 468 Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512 V R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 469 VARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNDTAR 526 Query: 513 ---EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E L Sbjct: 527 QVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDL 586 Query: 569 IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 IKFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SG Sbjct: 587 IKFDFLGLKTLTVIDDALKIIKTQHQIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SG 645 Query: 628 MRQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684 M Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK Sbjct: 646 MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKP 705 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 706 TYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMAGNKAKFVEGAKNLGHDGQ 765 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 A+N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + + Sbjct: 766 KAINLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVAR 825 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG-------DNRIYYSLAAIKGVGTTTARHIMEAS 857 + + R I++MPP +N+ DF V + +I + L AIKGVG+ ++I+E Sbjct: 826 YIDEVRALEIEVMPPHINSSMQDFSVAEFKNEKVEKKIVFGLGAIKGVGSEPIKNIIEER 885 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + +LEDF SR+D KL ++ LE LV +G+LD GY+R +L +LD I + K Sbjct: 886 TKGDYKNLEDFISRMDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDVGR--AK 943 Query: 918 NRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ N+ ++F + +++ L+ ++ + E E LG + SG+PLD + Sbjct: 944 DKANEMMQGGNSLFGAMESETREQVILDMADLGEHDAKMLLEYEYETLGIHVSGNPLDEF 1003 Query: 972 KPILRKMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 K IKG++ V +I + L ++ K++ R G G + Sbjct: 1004 KE-----EIKGFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTAEILDRY 1058 Query: 1025 KEYEANFF 1032 ++E FF Sbjct: 1059 GKFELMFF 1066 >gi|15646069|ref|NP_208251.1| DNA polymerase III subunit alpha [Helicobacter pylori 26695] gi|2494191|sp|P56157|DPO3A_HELPY RecName: Full=DNA polymerase III subunit alpha gi|2314638|gb|AAD08502.1| DNA polymerase III alpha-subunit (dnaE) [Helicobacter pylori 26695] Length = 1211 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1040 (37%), Positives = 598/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + ++ ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + E + + ++ + KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F +G +++ L+ + ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMEGGTKEQVVLDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|308183558|ref|YP_003927685.1| DNA polymerase III subunit alpha [Helicobacter pylori PeCan4] gi|308065743|gb|ADO07635.1| DNA polymerase III subunit alpha [Helicobacter pylori PeCan4] Length = 1211 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1040 (37%), Positives = 598/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A++ + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKRIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F ++E D + ++ + +KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAKEEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YQERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F G +++ L+ ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMDGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|317014874|gb|ADU82310.1| DNA polymerase III subunit alpha [Helicobacter pylori Gambia94/24] Length = 1211 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1041 (37%), Positives = 596/1041 (57%), Gaps = 77/1041 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A++ + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKRIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRFIEKECDDIQKEEENELRN-------KAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + P P F K KEE + + KA GL+ RL + K H Q Y++R Sbjct: 294 NPPTPPSF--KFTKAYAKEEGLDFEDDASYFAYKAREGLKERLI--LVPKEKHDQ-YKER 348 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 L+ E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 349 LEKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKY 408 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RD Sbjct: 409 DLLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRD 468 Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512 V R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 469 VARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNEVAK 526 Query: 513 ---EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E L Sbjct: 527 QVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDL 586 Query: 569 IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 IKFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SG Sbjct: 587 IKFDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SG 645 Query: 628 MRQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684 M Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK Sbjct: 646 MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKP 705 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 706 TYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQ 765 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + + Sbjct: 766 KAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVAR 825 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIME 855 + + R I++MPP +N+ DF V + +I + L A+KGVG ++I+E Sbjct: 826 YIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIE 885 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 886 ERAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR-- 943 Query: 916 EKNRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLD 969 K++ N+ ++F +G +++ L+ ++ E E LG + SG+PLD Sbjct: 944 AKDKANEMMQGGNSLFGAMEGGTKEQVILDMADLGEHDAKTLLECEYETLGIHVSGNPLD 1003 Query: 970 VYKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1004 EFKE-----EIKGFKNLVKSI 1019 >gi|157693324|ref|YP_001487786.1| DNA polymerase III DnaE [Bacillus pumilus SAFR-032] gi|157682082|gb|ABV63226.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus SAFR-032] Length = 1111 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1041 (36%), Positives = 587/1041 (56%), Gaps = 69/1041 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+VHLQVHS YSLL A + ++ K A+A+TD + ++ +EF ++ I+P Sbjct: 2 SYVHLQVHSGYSLLSSAAKVKELVLKAKELGYKALALTDDHVMYGTVEFYKECKKHDIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG + + + Q +P +VLL EGYQ LI++ S + + K Sbjct: 62 VIGLTASVFIDE------QETEAYP----LVLLAKNNEGYQNLIKISSVL----KSKSKA 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 + WL+ GLI +T G SG I+ + + A K +FG+ +Y+ LQ Sbjct: 108 GLKEKWLKSY-HRGLIAITPGVSGYIETLLQHDQIEEAHHAAKQLKHIFGEGHVYIALQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + D +++ ++ ++PLVAT + ++ ED A+ L A+ + + + R Sbjct: 167 FQQ-DESLVAKLRDVSKMADIPLVATGDVHYIKREDKMAYTCLKAIKAGQQLPEVEEDRA 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + + + EM ++ E L TVEIA RC L + LP + + Q + Sbjct: 226 --EKHFRTFEEMKEWYTQDTELLTRTVEIADRCEVDLNLGQTKLPSYPTPD----QSTAD 279 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR G++ R A Y +RL++EL++I +M FS YFLIV DF+++A Sbjct: 280 QFLRKVCAEGMKQRKIASNDA-------YVKRLEYELSIIQKMNFSDYFLIVWDFMKYAH 332 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 I GPGRGS AGS+ AY L ITD+DPL LLFERFLNP+R+SMPD DIDF RRD Sbjct: 333 DQGIVTGPGRGSAAGSLVAYVLFITDVDPLCHGLLFERFLNPERISMPDIDIDFPDTRRD 392 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+I YV++KYG VAQI+TFG+L AKAALRDVGR + + DRL KLIP+ P Sbjct: 393 EIISYVKDKYGDMHVAQIVTFGTLAAKAALRDVGRVMGIDSKAADRLAKLIPSKPG---- 448 Query: 489 LQAIADDSRFREARLADPSVDRLL----EISQ------KLEGLYRHASTHAAGIVIGDRP 538 + +EA A P + +L E+SQ K+EGL RH STHAAG+V+ + P Sbjct: 449 -------TTLKEALTASPELKTMLQQSEELSQVFQTALKVEGLPRHTSTHAAGVVLSEEP 501 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597 L+++VP+ +D + +TQ+ M ++E GL+K DFLGL+ LTL++ + + Q V ++ Sbjct: 502 LTEIVPI-QDGHDGVYLTQYAMNYLEDLGLLKMDFLGLRNLTLIESIKNQIERQENVHIN 560 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 S I ++D +T+ LL+ T GIFQLES GMRQ L ++P +EDI+A+ +LYRPGP++N Sbjct: 561 FSDISYEDQKTFELLSAGDTTGIFQLESQGMRQVLRRLKPSSLEDIVAVNALYRPGPMEN 620 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I ++ +RK+G+ K+ HP + +LK+T GVI+YQEQ+M IA ++G+ L EAD+LRRA+ Sbjct: 621 IPLFIDRKHGRVKVSYPHPDLYDILKDTYGVIVYQEQIMLIAAKMAGFQLGEADLLRRAV 680 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK K+ +D+++ F+ G K IA ++++L+ KFA+YGFN+SHA AY++I +Q A Sbjct: 681 SKKDKKVLDEERSHFVEGCLKKEYPVNIANDVYDLIVKFANYGFNRSHAVAYSMIGFQLA 740 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP+ F+ +T + N +K+ ++ +A++ I ++ PS+N F V I Y Sbjct: 741 YLKAHYPLYFMCGLLTSVIGNQDKVAQYFYEAKEKGISVLKPSINKSEFPFTVEKGEIRY 800 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 SL AIK VG + + I A +KPF+ L DFC+RV +K +NR+ +E+L+F+GA+D + Sbjct: 801 SLRAIKNVGVSAVKDIYRARQEKPFEDLFDFCARVSAKSVNRKTIEALIFSGAMDELYPN 860 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R LL S+D + ++ N + + TFS K + + E+ Sbjct: 861 RASLLASIDIALDHVSFL-----NPDDQLDFLGDTTFSIKPKYAEIEELPLVDLLQFEKE 915 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-----GNNIRLAAMVVSKQQKKTRKG 1012 LG Y S HP+ Y+ LR+ G +V IR + + ++ + +T+ G Sbjct: 916 ALGLYLSNHPVQAYRDRLRENG------AVEIIRLSSFIKRKVSMGGLLTKVKSIRTKNG 969 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + +VTF + E E FP Sbjct: 970 QSMAFVTFGDETGEMEGVVFP 990 >gi|317011593|gb|ADU85340.1| DNA polymerase III subunit alpha [Helicobacter pylori SouthAfrica7] Length = 1211 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1041 (37%), Positives = 599/1041 (57%), Gaps = 77/1041 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++K+ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKKTKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-ASKETKQRF----HLCLFAKNQEGYENLMYLSSMAYL--E 113 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLT 173 G RI L+E ++G+I + G ++ R + A+K Sbjct: 114 GFYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRRYGAKGYDEAKKIACE 172 Query: 174 FKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 ++++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 173 YQEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAM 232 Query: 233 AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 233 CVAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDK 292 Query: 288 -HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + P P F + E D + ++ + +KA GL+ RL + K H Q Y++R Sbjct: 293 KNPPTPPSFKFTKAYAQNEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHEQ-YKER 348 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 L+ E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 349 LEKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKY 408 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RD Sbjct: 409 DLLFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRD 468 Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512 V R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 469 VARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNDIAK 526 Query: 513 ---EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E L Sbjct: 527 QVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDL 586 Query: 569 IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 IKFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SG Sbjct: 587 IKFDFLGLKTLTVIDDALKIIKTQHQISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SG 645 Query: 628 MRQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684 M Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK Sbjct: 646 MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKP 705 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 706 TYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQ 765 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + + Sbjct: 766 KAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVAR 825 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIME 855 + + R I++MPP +N+ DF V + +I + L AIKGVG+ ++I+E Sbjct: 826 YIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGSEPIKNIIE 885 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915 + +LEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 886 ERTKGDYKNLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR-- 943 Query: 916 EKNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLD 969 K++ N+ ++F + +++ L+ + ++ E E LG + SG+PLD Sbjct: 944 AKDKANEMMQGGNSLFGAMESETREQVILDMVDLGEHDAKTLLEYEYETLGIHVSGNPLD 1003 Query: 970 VYKPILRKMGIKGYEESVATI 990 +K +KG++ V +I Sbjct: 1004 EFKE-----EVKGFKNLVKSI 1019 >gi|317010167|gb|ADU80747.1| DNA polymerase III subunit alpha [Helicobacter pylori India7] Length = 1211 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1040 (37%), Positives = 597/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + E D + ++ + KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAQNERLDFE-DDASYFAYKAREGLKERLI--LVPKEKHDQ-YKERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L A+KGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F +G +++ L+ ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMEGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|229006940|ref|ZP_04164570.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock1-4] gi|228754340|gb|EEM03755.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock1-4] Length = 1096 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/1018 (36%), Positives = 594/1018 (58%), Gaps = 52/1018 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+ A ++ ++ + +++ITD N ++ + F + G++PIIG + Sbjct: 1 MLKSACKIDELVSRAKELGFSSLSITDENVMYGVIPFYKACKKNGVRPIIGLTASV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + + +P +VLL GYQ L+++ S + K I WL Sbjct: 57 ---FSEEEEQSYP----LVLLAENEMGYQNLLKISSTI----MTKSKDGIPKKWLSHYA- 104 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQV 200 +GLI ++ G G I++ ++AE+ ++ +FG Y++LQ H D + + ++ Sbjct: 105 KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMFGS-FYMSLQHHAIQDELFLQEKL 163 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSE 259 Q A +P+VATN+ ++++ D + L++V T ++ DRPR+ D +YLK+ +E Sbjct: 164 PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M ++FS EAL+NTV IA RC + H LP+F NE + + Sbjct: 224 MEALFSHAEEALQNTVCIAERCHVEIPFHVNQLPKF---------PVPSNETSDAYLR-- 272 Query: 320 EVRLAQGAIAKGYHA-QD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 R+ + + K Y A QD +R+RL+ EL VI+ M FS YFLIV DF+++ ++ I GPG Sbjct: 273 --RICEDGLNKRYGAVQDVHRKRLNHELEVISCMGFSDYFLIVWDFMKYGHEHGILTGPG 330 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF RRDE+IRYV++K Sbjct: 331 RGSAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDK 390 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497 YG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + +A + Sbjct: 391 YGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLK-EAYEESGS 449 Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557 RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + ++ +D+ VTQ Sbjct: 450 LREFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI-QEGHNDVYVTQ 508 Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKG 616 + + +E+ GL+K DFLGL+ LTLL+ L F+ + G ++D+ +P D +T+ LL Sbjct: 509 YPAEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGD 568 Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676 T G+FQLES GMR L ++P+ EDI+A+ +LYRPGP++ I + K+GK +I +H Sbjct: 569 TTGVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKCQIHYLHS 628 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736 + P+LK T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK +E +D++++ F+ G Sbjct: 629 DLKPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGC 688 Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796 +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++ + Sbjct: 689 LRNGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAI 748 Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856 N +KI ++ ++ ++ ++PPS++ +F++ N I YSL +I+ +G T ++E Sbjct: 749 GNEDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEE 808 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 PF L +FC R+ +K + R LE+ V+AG D F SR L S+ +YA Sbjct: 809 RERNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYAS--- 865 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYFSGHPLDVYKPIL 975 A E G S ++ E S + + NE+ LGFY S +P Y ++ Sbjct: 866 ----------LARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYPTAQYAKLV 915 Query: 976 RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +++ I +++ R N R V + +T+K ++ +VTF + E EA FP Sbjct: 916 KELEIPSLAQAMRQKR-NVQRAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972 >gi|207091746|ref|ZP_03239533.1| DNA polymerase III subunit alpha [Helicobacter pylori HPKX_438_AG0C1] Length = 1211 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1040 (37%), Positives = 597/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + ++ ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + E D + ++ + +K GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAKNEGLDFE-DDASYFAHKVREGLKERLI--LVPKEKHDQ-YQERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F G +++ L+ + ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|218135117|ref|ZP_03463921.1| hypothetical protein BACPEC_03022 [Bacteroides pectinophilus ATCC 43243] gi|217990502|gb|EEC56513.1| hypothetical protein BACPEC_03022 [Bacteroides pectinophilus ATCC 43243] Length = 1200 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/1002 (37%), Positives = 573/1002 (57%), Gaps = 61/1002 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E +F HL VH+ YSLL+G +N I+ + ++AITD ++ ++F + A Sbjct: 1 MEIRMAFTHLHVHTEYSLLDGLSKINEIVSQAKKLGMDSLAITDHGVMYGVIDFYRAALK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + + + +VLL GY L+++VS+ ++ + Sbjct: 61 EGIKPIIGCEVYV--APGSRFDKEAGAGDDRYYHLVLLAENDTGYHNLMKIVSKGFV-EG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183 R+ L E EG+I L+ +G + R N + K L ++++FG + Sbjct: 118 FYYKPRVDYEVLSEY-HEGVIALSACLAGEVQRYLARNMYEEGVKAALRYQEIFGKGNYF 176 Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H R+ Q+++++ + LVATN+ + +D AHD+L+ + S ++ Sbjct: 177 LELQDHGIPEQRFVNQQLMRMSRELGIDLVATNDVHYTFADDASAHDILLCIQTSKKITD 236 Query: 243 KDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 DR + +YLK+ EM +F+ P+AL+NT +IA RC+ ++ LP++ + Sbjct: 237 TDRMKYEGGQYYLKSEQEMRELFAYAPQALDNTAKIAARCNVEIEFGVQKLPKY---DTP 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + LR G R +D R+RLD+EL+VI M + YFLIV Sbjct: 294 AVYASSSEYLRWLCNRGFGKRYPDAP-------EDVRKRLDYELSVINEMGYVDYFLIVW 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +AK N+I VGPGRGS AGSV AY L ITDIDP+++SL+FERFLNP+R+SMPD D+D Sbjct: 347 DFINYAKSNDISVGPGRGSAAGSVVAYCLEITDIDPIKYSLIFERFLNPERVSMPDIDVD 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR EVI YV KYG +RV QI+TFG++ A+A ++DVGR L +PY+ D + K+IP Sbjct: 407 FCFERRQEVIDYVVRKYGKDRVCQIVTFGTMAARAVIKDVGRVLDLPYALRDSVSKMIPR 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +AI + + +D +V L++ S++LEGL RHAS HAAG+VI + + + Sbjct: 467 ELGITID-KAIEMNPELKALYNSDETVHDLIDKSRRLEGLPRHASMHAAGVVISQKAVDE 525 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 VP+ R + V QF M +E+ GL+K DFLGL+TLT++Q + + + D+ I Sbjct: 526 YVPLSRGSDGSI-VAQFVMTTLEELGLLKMDFLGLRTLTVIQSAEHMVRKVVPDFDIDKI 584 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 ++D + +L+T T G+FQLESSGM+ ++ ++P +EDIIA +SLYRPGP+D I Y Sbjct: 585 DYNDAAVFDMLSTGRTEGVFQLESSGMKSFMKELKPHSMEDIIAGISLYRPGPMDFIPQY 644 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 KN + IV P ++P+L+ T G I+YQEQVMQI + L+GYS +D++RRAM KK Sbjct: 645 IKGKNDRSSIVYDCPQLEPILEPTYGCIVYQEQVMQIVRDLAGYSWGRSDLVRRAMSKKK 704 Query: 722 KEEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 M++++ FI G NGI + +A +I++ + FA Y FNKSHAA YAV++ Sbjct: 705 AYVMEQERRNFIYGNPEENVKGCVNNGIDEKVAGHIYDNMIDFAKYAFNKSHAACYAVVA 764 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++KTHYP +F+AA MT +DN K+ ++ RQ I I+PP VN F V N Sbjct: 765 YQTAFLKTHYPTQFMAALMTSVIDNSTKVAEYVMACRQMGIDILPPDVNEGEYGFSVSGN 824 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L+AIK +G ++ E S + F +L DF R+ K+ N+R +E+ + +GA D Sbjct: 825 AIRYGLSAIKSLGRPVIEALVNERSENGKFKNLRDFIERM-GKEANKRTIENFIKSGAFD 883 Query: 893 CF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 CF G R Q+L Y+Q V +++ +EK + + +++L F E + Sbjct: 884 CFEGNRRQQMLV-------YSQIV--------DDVARNEKNSLTGQMSLFDFVDEETKAE 928 Query: 952 FE----------------NEQRVLGFYFSGHPLDVYKPILRK 977 FE E+ VLG Y SGHPLD Y + K Sbjct: 929 FEIKMPDVPEYGKKELLAFEKEVLGIYVSGHPLDEYIDMWNK 970 >gi|188528231|ref|YP_001910918.1| DNA polymerase III subunit alpha [Helicobacter pylori Shi470] gi|188144471|gb|ACD48888.1| DNA polymerase III subunit alpha [Helicobacter pylori Shi470] Length = 1211 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1040 (37%), Positives = 597/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + E + + ++ + KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F G +++ L+ + ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|297380684|gb|ADI35571.1| DNA polymerase III, alpha subunit [Helicobacter pylori v225d] Length = 1211 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1039 (37%), Positives = 597/1039 (57%), Gaps = 73/1039 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF----IEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + P P F + + + E++ + KA GL+ RL + K H Q Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL--------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 471 RVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQV 528 Query: 513 -EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIK Sbjct: 529 WEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIK 588 Query: 571 FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 FDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 589 FDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGMF 647 Query: 630 QAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 648 QGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTY 707 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A Sbjct: 708 GTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKA 767 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 768 ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYI 827 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEAS 857 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 828 DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEER 887 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + K Sbjct: 888 AKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--AK 945 Query: 918 NRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ N+ ++F G +++ L+ + ++ E E LG + SG+PLD + Sbjct: 946 DKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005 Query: 972 KPILRKMGIKGYEESVATI 990 K IKG++ V +I Sbjct: 1006 KE-----EIKGFKNLVKSI 1019 >gi|225571413|ref|ZP_03780409.1| hypothetical protein CLOHYLEM_07511 [Clostridium hylemonae DSM 15053] gi|225159889|gb|EEG72508.1| hypothetical protein CLOHYLEM_07511 [Clostridium hylemonae DSM 15053] Length = 1159 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1052 (37%), Positives = 592/1052 (56%), Gaps = 48/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ ++AITD +F ++F + A AG++P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKECISRVKELGMDSVAITDHGVMFGVIDFYRAAKEAGVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC++ + G + +VLL GY L++LVSR + + Sbjct: 62 VLGCEVYVAPGSRFD-KEAGGSGEDRYYHLVLLAENDMGYHNLMKLVSRGFT-EGYYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L L+E EG+I L+ +G + R A+ ++ +FG+ ++ LQ Sbjct: 120 RVDLELLEEY-HEGIIALSACLAGEVQRNIMRGMYSEAKAAAQRYEGIFGEGNFFLELQD 178 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +Q +++L+ + LVATN+ + E+D + HD+L+ + ++ +DR R Sbjct: 179 HGMQEQKMVNQSLLRLSQETGIELVATNDIHYTYEDDVKPHDILLCLQTGKKLADEDRMR 238 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM +F +ALENT +IA RC+ ++ LP++ E Sbjct: 239 YEGGQYYIKSEEEMRRLFPYALQALENTQKIADRCNVEIEFGVTKLPKYDVPE----GYT 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL+ R G A +RL++EL+VI M + YFLIV DFI++ Sbjct: 295 SWEYLRKLCFEGLKRRYPDGEEALA-------ERLEYELSVIQSMGYVDYFLIVWDFIKY 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK ++I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD DIDFC +R Sbjct: 348 AKDHDIIVGPGRGSAAGSIVSYCLDITSIDPIKYQLLFERFLNPERVSMPDIDIDFCFER 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG+L A+ +RDVGR + +PY+ VD + K++P + Sbjct: 408 RQEVIDYVVEKYGSDRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDNIAKMVPTELNMT 467 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+A + R D V L+++S++LEGL RH S HAAG+VI + + + VP+ Sbjct: 468 LE-RALAMNPELRRVYQEDEQVRELIDMSKRLEGLPRHTSMHAAGVVISQKAVDEYVPL- 525 Query: 547 RDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604 + SD V TQF M +E+ GL+K DFLGL+TLT++Q + G +D+ I +D Sbjct: 526 -SLGSDGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAAQLAGVSTGQPIDMDNIDYD 584 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + + T T GIFQLES GM+ ++ ++P +EDIIA +SLYRPGP+D I Y Sbjct: 585 DKKVLSSIGTGRTDGIFQLESGGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKG 644 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN + I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM KK + Sbjct: 645 KNNAQSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDV 704 Query: 725 MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 M K+++ F + G KNGI + A I++ + FA Y FNKSHAAAYAV+SYQT Sbjct: 705 MKKERQNFVYGNEEEGVPGCIKNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQT 764 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRI 835 AW+K +YPVEF+AA MT +DN K+ ++ R Q I+IMPP +N +F V + RI Sbjct: 765 AWLKYYYPVEFMAALMTSCIDNPGKVAEYIYTCRQQMGIEIMPPDINKGLGNFTVENGRI 824 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y LAAIK +G I+ E A PF +L+DF R+ K++N+R LE+ + +GA D Sbjct: 825 RYGLAAIKSIGRPVIDAIVSERGAGGPFKTLKDFIERMSGKEVNKRTLENFIKSGAFDSL 884 Query: 895 GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSS 949 G +R Q + Q LD + + ++ + + + +K F + + ++ EN Sbjct: 885 GGTRKQFMIIYVQILDQVNQERKYSMTGQMTLFDMVDEDQKAEFDIPLPDVGEYEKEN-L 943 Query: 950 VRFENEQRVLGFYFSGHPLDVY-----KPILRKMGIKGYEESVATIR---GNNIRLAAMV 1001 + FE E VLG Y SGHP++ Y K I R +E + G + ++ Sbjct: 944 LSFEKE--VLGIYLSGHPMEEYEEKWKKSITRTTLDFQLDEETGQTKVHDGAQEVVGGII 1001 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K T+ + ++T + A E FP Sbjct: 1002 ADKTIKYTKNNKTMAFLTLEDLAGTVEVVVFP 1033 >gi|317181143|dbj|BAJ58929.1| DNA polymerase III subunit alpha [Helicobacter pylori F32] Length = 1211 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1040 (37%), Positives = 596/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + E + + ++ + KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKST 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RTKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F G +++ L+ + ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|56421279|ref|YP_148597.1| DNA-directed DNA polymerase III subunit alpha [Geobacillus kaustophilus HTA426] gi|56381121|dbj|BAD77029.1| DNA-directed DNA polymerase III alpha subunit [Geobacillus kaustophilus HTA426] Length = 1091 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1032 (38%), Positives = 589/1032 (57%), Gaps = 65/1032 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL V S YSL + A ++ + + A+A+TD N L+ A+ F ++ GI+PI Sbjct: 3 FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG D+ + G+ FP +VLL + EGY+ L+E +S M + + K Sbjct: 63 IGVTADVALS--------GEEAFP----LVLLAANEEGYRHLLE-ISTMMQMGETKHMEE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 L L + G+I +T GS G ++ + A++ L + +LF RLYV +QR Sbjct: 110 AALVRL----SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 165 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKDRPRV 248 E+ ++QL +P+VATN+ ++ D A L A+ +++ + D R Sbjct: 166 QTRAPYEAGLLQLVEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLADIEDDNGR- 224 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 YL EM F+DLPEALEN++ IA +C ++ LP + + + + Sbjct: 225 ----YLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGET----AD 276 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR RL++ +A+ + D Y +RL EL+VI + FS YFLIVAD + + Sbjct: 277 SYLR---------RLSEQGLARRVPSADERYWRRLSHELDVIQSLHFSDYFLIVADVLAY 327 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++ I GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF DR Sbjct: 328 ARRRGILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDDR 387 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVIRYV +KYG +RVAQIITFG+ AKAALR+ +AL +P + +++ L+P+ Sbjct: 388 REEVIRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSK--QS 445 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L Q A+ + FR A A P L ++QKLEGL RH S HAAG++I PL + VP+ Sbjct: 446 VTLRQWHAESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPL 505 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604 + + P+TQ+ M +E GL+K DFLGL+TLTL+++ + + Q G D+ +P + Sbjct: 506 -QPSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLN 564 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY LL T GIFQLESSGM++ L ++P +ED++A+ +LYRPGP+ I VY R Sbjct: 565 DEKTYALLGAGDTNGIFQLESSGMKRVLAELRPSQLEDVVAVNALYRPGPMQMIPVYIRR 624 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K G+E + HP ++ +L T GV+IYQEQ+MQIA L+G+SL +ADVLRRA+ KK K Sbjct: 625 KRGEEPVSYAHPDLETILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKAL 684 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + +Q++ F++G NG K +A ++ + +FADYGFN+SHA +YA++SY A+MK HYP Sbjct: 685 LAEQRQAFVAGCVANGYPKAVAEELYRHIVRFADYGFNRSHAVSYALLSYAMAYMKAHYP 744 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 + F A +T + EK + +A + I ++ PSVN V + I LA +K Sbjct: 745 LCFYAVMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSSVEGSAIRLGLAMVKQ 804 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG+ + E A+ PF DF +R+ K L R LE+L+ GA D FG R LL S Sbjct: 805 VGSAAKLIVEERKANGPFADFFDFAARLLPKGLGRPALEALISVGAFDEFGADRASLLAS 864 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGF 961 +D ++AQWV+ A + G S K K++ +S S R E LGF Sbjct: 865 IDIAIEHAQWVQ-----------ALQAGGLSLK---PKYAAAHSWPLSERRRREAEFLGF 910 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HP V +P+L+ G VA ++G + + VV ++ +T++G + + T Sbjct: 911 AVTPHPAAVCRPLLQAAGAV----CVADVQGPSTVVGGAVVRIRKTRTKQGEEMAFFTVG 966 Query: 1022 EPAKEYEANFFP 1033 + + E EA FP Sbjct: 967 DESGELEAVAFP 978 >gi|331268630|ref|YP_004395122.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925] gi|329125180|gb|AEB75125.1| DNA polymerase III, alpha subunit [Clostridium botulinum BKT015925] Length = 1168 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1067 (36%), Positives = 605/1067 (56%), Gaps = 67/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL H+ YSLL+G+ + ++ + ++AITD +F ++F +KA AGI+P Sbjct: 7 NFVHLHTHTEYSLLDGSGKIGGLISRAKELGMKSLAITDHGTMFGCVDFYKKAKEAGIKP 66 Query: 70 IIGCQLDIDMQD----NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 IIGC++ + L N+ +VLLV +GY+ L+++VS+ +D Sbjct: 67 IIGCEIYVASNSMHIKRLDSENRNH-------HLVLLVKNEQGYKNLMKIVSKA-AIDGF 118 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L+E +EGLI L+ +G + + A + L +K +F + Y+ Sbjct: 119 YYKPRVDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKDKAREVALFYKDIFKEGFYIE 177 Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H G D+ +V+LA ++PLVATN+ ++ +ED ++H+VL+ + + + Sbjct: 178 LQYH-GIDKQLRVNEMLVELARELDIPLVATNDVHYIKKEDAKSHEVLLCIQTGKTLDDE 236 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR R P YLK+ EM FS + EALENT +IA C+F H LP F E D Sbjct: 237 DRMRYEPQKFYLKSPEEMYETFSYVSEALENTNKIADECNFDYVFHESKLPNFPLPEGAD 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E EL K GLEVR + + ++RL++EL VI +M + YFLIV D Sbjct: 297 -HFEYMKELCYK---GLEVRYLEVT-------DELKERLEYELGVIKQMGYVDYFLIVWD 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F +++ + I GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DF Sbjct: 346 FFRFSHEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV KYG E V+QI+TFG++ +A +RDVGRA+ Y++VDR+ K+IP Sbjct: 406 CYERRGEVIDYVVEKYGKENVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTV 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ + +E D + L+++++ LEGL RH STHAAG+VI +PL Sbjct: 466 LGITID-KALEMNPELKEVYDKDMRIKELIDVARDLEGLPRHTSTHAAGVVIASQPLVSY 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+ ++ + VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + G K+DL I Sbjct: 525 VPLSKN--EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIELIKKNTGTKIDLDKI 582 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 F+D Y++L T+G+FQLES+GM ++ ++P+ +EDIIA +SLYRPGP+ I Y Sbjct: 583 NFEDENVYNMLGRGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKY 642 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 KN + I I P ++ +L T GV++YQEQVMQI + L+GYS+ +D++RRAM KK Sbjct: 643 IKNKNNPKNIEYITPKLEGILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKK 702 Query: 722 KEEMDKQKERFISGAS-----------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+++++ FI G +NGIS+ A I++ + FA Y FNKSHAAAYA Sbjct: 703 HKVMEEERKNFIYGIEEDGKVVVPGCLRNGISEDAANKIYDQMMDFASYAFNKSHAAAYA 762 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 V++Y TA++ +YP EF+AA + N +K+ + + A+Q +I+ +PP +N F V Sbjct: 763 VVAYYTAYLVHYYPTEFMAAMLNSVRGNSDKVAIYIRAAKQMDIETLPPDINKSFGKFTV 822 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + +I + L+AIK VG I+++ +K F+S DFC+++ +N+R++ESL+ AG Sbjct: 823 QNGKIRFGLSAIKNVGENIIDVIVKSREEKGEFNSFVDFCNKISMGSINKRMVESLIKAG 882 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948 DCFG R QLL + I K ++F F D +I N Sbjct: 883 VFDCFGIYRSQLLAVYEKIIDSVVNQRKKNIEGQVSLFGSFDNEFKDTEIKYPAIDEFNK 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILR----------------------KMGIKGYEES 986 + E+ + G Y +GHPL+ Y+ IL+ ++ + E++ Sbjct: 943 KSKLAMEKEMTGLYLTGHPLEDYEEILKNATSAKTTDIIIDESLEENLIDEVSLHVEEQN 1002 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + ++ + +K T+ S + ++T + E FP Sbjct: 1003 SKIKDGDKVIIGGLITNVTRKITKTNSMMAFITLEDLYSSIEVIIFP 1049 >gi|15612418|ref|NP_224071.1| DNA polymerase III subunit alpha [Helicobacter pylori J99] gi|11132624|sp|Q9ZJF9|DPO3A_HELPJ RecName: Full=DNA polymerase III subunit alpha gi|4155965|gb|AAD06929.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99] Length = 1211 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1039 (37%), Positives = 598/1039 (57%), Gaps = 73/1039 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A++ + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF----IEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + P P F + + + E++ + +KA GL RL + + H Q Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLSFEDDASYFAHKAREGLRERLI--LVPEEKHEQ-YKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL--------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 471 RVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQV 528 Query: 513 -EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIK Sbjct: 529 WEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIK 588 Query: 571 FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 FDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 589 FDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGMF 647 Query: 630 QAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 648 QGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTY 707 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A Sbjct: 708 GTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKA 767 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 768 ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYI 827 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEAS 857 + R I++MPP +N+ DF V + +I + L A+KGVG ++I+E Sbjct: 828 DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEER 887 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + K Sbjct: 888 AKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--AK 945 Query: 918 NRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ N+ ++F +G +++ L+ + ++ E E LG + SG+PLD + Sbjct: 946 DKANEMMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005 Query: 972 KPILRKMGIKGYEESVATI 990 K IKG++ V +I Sbjct: 1006 KE-----EIKGFKNLVKSI 1019 >gi|217033909|ref|ZP_03439333.1| hypothetical protein HP9810_870g41 [Helicobacter pylori 98-10] gi|216943672|gb|EEC23117.1| hypothetical protein HP9810_870g41 [Helicobacter pylori 98-10] Length = 1211 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1039 (37%), Positives = 597/1039 (57%), Gaps = 73/1039 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIRMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF----IEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + P P F + + + E++ + KA GL+ RL + K H Q Y++RL+ Sbjct: 294 NPPTPPSFKFTKTYAQNEGLSFEDDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL--------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 471 RVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQV 528 Query: 513 -EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIK Sbjct: 529 WEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIK 588 Query: 571 FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 FDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 589 FDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGMF 647 Query: 630 QAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 648 QGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTY 707 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K++F+ GA G A Sbjct: 708 GTIVYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKDKFVEGAKNLGHDGQKA 767 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 768 ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYI 827 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEAS 857 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 828 DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEER 887 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + K Sbjct: 888 TKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--AK 945 Query: 918 NRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ N+ ++F G +++ L+ + ++ E E LG + SG+PLD + Sbjct: 946 DKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005 Query: 972 KPILRKMGIKGYEESVATI 990 K IKG++ V +I Sbjct: 1006 KE-----EIKGFKNLVKSI 1019 >gi|168185626|ref|ZP_02620261.1| DNA polymerase III subunit alpha [Clostridium botulinum C str. Eklund] gi|169296453|gb|EDS78586.1| DNA polymerase III subunit alpha [Clostridium botulinum C str. Eklund] Length = 1167 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1075 (36%), Positives = 622/1075 (57%), Gaps = 76/1075 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL H+ YSLL+G+ + ++++ ++AITD +F ++F +KA AG Sbjct: 2 KGQKFVHLHTHTEYSLLDGSGKIGGLINRAKELGMDSLAITDHGTMFGCVDFYKKAKEAG 61 Query: 67 IQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 I+PIIG ++ + + N+K + +VLLV GY+ L+++VS+ +D Sbjct: 62 IKPIIGSEIYVASKSMNIKRNDSENKNH----HLVLLVKNEIGYKNLMKIVSKA-AIDGF 116 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L+E +EGLI L+ +G + + + A + L +K +F + Y+ Sbjct: 117 YYKPRVDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKEGFYLE 175 Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H G D+ +++L+ ++PLVATN+ ++ +ED ++HDVL+ + + + Sbjct: 176 LQYH-GIDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDE 234 Query: 244 DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR R P + YLK+ EM + FS +PEALENTV+IA+ C+F H LP F E D Sbjct: 235 DRMRYEPQNFYLKSPEEMYNTFSYVPEALENTVKIAQECNFDYIFHESKLPNFPLPEGKD 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E EL K GLEVR ++ + +RL++EL VI M + YFLIV D Sbjct: 295 -HFEYMKELCYK---GLEVRYSE-------ITPELEERLEYELGVIKEMGYVDYFLIVWD 343 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F +++ + I GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DF Sbjct: 344 FFRFSHEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDF 403 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV KYG + V+QI+TFG++ +A +RDVGRA+ Y++VDR+ K+IP Sbjct: 404 CYERRGEVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTV 463 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ + +EA +D V L+++++ LEGL RH STHAAG+VI +PL Sbjct: 464 LGITID-KALEMNPELKEAYDSDNRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNY 522 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+ ++ + VTQF M +E+ GL+K DFLGL+TLT+++ ++D + + G K+DL I Sbjct: 523 VPLSKN--EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLIEENTGTKIDLDKI 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 F+D Y +L T+G+FQLES+GM ++ ++P+ +EDIIA +SLYRPGP+ I Y Sbjct: 581 NFEDENVYGMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKY 640 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 KN + I + P ++P+L T GV++YQEQVMQI + L+GYS+ +D++RRAM KK Sbjct: 641 IKNKNNPKNIEYLTPELEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKK 700 Query: 722 KEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 + M+++++ FI G KNGIS+ A I++ + FA Y FNKSHAAAY Sbjct: 701 HKVMEEERKNFIYGIEDEKGNVIVPGCLKNGISEDAANKIYDQMMDFASYAFNKSHAAAY 760 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 AV++Y TA++ +YP EF+AA + N +K+ + + A+Q I+++PP++N F Sbjct: 761 AVVAYYTAYLVYYYPTEFMAAILNSVRGNSDKVAVYIRAAKQMEIEVLPPNINKSFGKFT 820 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V + +I + L+AIK VG +I + +K F+S DFC+++ S +N+R++ESLV A Sbjct: 821 VQNGKICFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVESLVKA 880 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--------TL 940 GA DCFG R Q+L + I K + ++F G+F D+ + Sbjct: 881 GAFDCFGIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLF----GSFDDEFKDTEIKYPAI 936 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR----------------------KM 978 ++F +N + E+ + G Y +GHPL+ Y+ ILR ++ Sbjct: 937 DEFDKKN---KLAMEKEMTGLYLTGHPLEEYEEILRNRTSAKTTDIIVDESLEEELIDEV 993 Query: 979 GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + E++ G+ + + ++ + +K TR S + ++T + E FP Sbjct: 994 TLHVEEQNSKIKDGDKVIICGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFP 1048 >gi|73749142|ref|YP_308381.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. CBDB1] gi|289433116|ref|YP_003462989.1| DNA polymerase III subunit alpha [Dehalococcoides sp. GT] gi|73660858|emb|CAI83465.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. CBDB1] gi|288946836|gb|ADC74533.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. GT] Length = 1170 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1022 (38%), Positives = 582/1022 (56%), Gaps = 47/1022 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ +SLL+G ++ ++ + A+AITD + F ++A AGI+PI Sbjct: 2 FCHLHVHTEFSLLDGMCRISQLVVRAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + + D T K + +VLL +GY LI+L SR +L + R Sbjct: 62 LGSEFYLAYGDRTAKTAADKNYY----HLVLLAKNNKGYHNLIQLSSRSHL-EGFYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ +EGL+ L+ SG + R N A + L +KK F + Y+ +QRH Sbjct: 117 IDKELLEKY-SEGLVCLSACPSGEVPRLILENRYDEAREAALWYKKTF-ENYYIEIQRHP 174 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + S ++ +A ++PLVATN++ +L +ED HD+L+ + + +VS + R ++ Sbjct: 175 MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234 Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE- 307 ++ YLK+ EM + D+P+A+ENT +IA C+ L LP DI K + Sbjct: 235 GEYFYLKSPQEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEI------DIPKGKT 288 Query: 308 -ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L + GL V + RL +EL+VI +F+ YFL+ D I++ Sbjct: 289 PDEYLADLCYEGLPVFYPDAG-------PEILDRLKYELDVIKTTEFANYFLVTWDIIRF 341 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 K+ + G RGS A S+ Y L IT +DP+R+ L+FERFLN +R MPD D+DF DR Sbjct: 342 VKEKGLYYGV-RGSAASSIVLYCLGITALDPIRYKLVFERFLNIERKEMPDIDMDFQDDR 400 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YV KYG + V+QIITFG+L AKAA+RDVGRAL M Y+ VDR+ K+IP P H Sbjct: 401 REEVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDVGRALGMAYADVDRVAKVIPFSP-HM 459 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +A+ + S +E D V L++ ++K+EGL RHASTHAAG+VI PL+ VP+ Sbjct: 460 TLDKAMEESSELKEMYNQDAVVRNLVDAARKVEGLSRHASTHAAGVVISKDPLTDHVPLQ 519 Query: 547 RDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 R + + L +TQ+ M+ I K GL+K DFLGL L +L K+ + + G +D IP Sbjct: 520 RLSKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIP 579 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +T+ LL T+G+FQLE +GMR+ ++ ++P DI A+V+LYRPGP++ I + Sbjct: 580 LDDQKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFI 639 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K+G E I HP ++P+L+ET GVI+YQEQV+ IAQ SGY+L +AD+LR+AMGKKI Sbjct: 640 KSKHGLEPITYPHPALEPLLEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIA 699 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 M KQK F+ GA KNG ++ IA +F L+ FA Y FNK+HA +YA+I+YQTA++K + Sbjct: 700 AVMQKQKANFVDGAMKNGYTREIADEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKAN 759 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYY 837 YPVE++ A + D EK+ +AR I+++PP +N +F++ G +I + Sbjct: 760 YPVEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGANFEIEQAEGGVKKIRF 819 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAAIK VG I+ E A+ + S+ED C R + LN+RV+ESLV AGALD G Sbjct: 820 GLAAIKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDNMG- 878 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSV---- 950 R L +L NI AQ +K + + +F FS + + + +E S V Sbjct: 879 DRGTLFFNLPNILSLAQREQKMKDSNQTTMF----DLFSQQSPVPMTNLELEESPVTTRE 934 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + + E+ ++G + S HP Y ++ + + + +A MV S + TR Sbjct: 935 KLQWEKELVGIFISEHPFTPYASSALEVTTALCGQIDEELHNQLVTVAGMVASVRVSATR 994 Query: 1011 KG 1012 +G Sbjct: 995 EG 996 >gi|308062724|gb|ADO04612.1| DNA polymerase III subunit alpha [Helicobacter pylori Cuz20] Length = 1211 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1039 (37%), Positives = 597/1039 (57%), Gaps = 73/1039 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF----IEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + P P F + + + E++ + KA GL+ RL + K H Q Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL--------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 471 RVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQV 528 Query: 513 -EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIK Sbjct: 529 WEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIK 588 Query: 571 FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 FDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 589 FDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGMF 647 Query: 630 QAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 648 QGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTY 707 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G IIYQEQVMQI Q + G+SL E+D++RRAMGKK + M K +F+ GA G A Sbjct: 708 GTIIYQEQVMQIVQTIGGFSLGESDLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKA 767 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 768 ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYI 827 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEAS 857 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 828 DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEER 887 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + K Sbjct: 888 AKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--AK 945 Query: 918 NRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ N+ ++F G +++ L+ + ++ E E LG + SG+PLD + Sbjct: 946 DKANEMMQGGNSLFGAMDGGTKEQVILDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005 Query: 972 KPILRKMGIKGYEESVATI 990 K IKG++ V +I Sbjct: 1006 KE-----EIKGFKNLVKSI 1019 >gi|218962013|ref|YP_001741788.1| DNA polymerase III, alpha subunit [Candidatus Cloacamonas acidaminovorans] gi|167730670|emb|CAO81582.1| DNA polymerase III, alpha subunit [Candidatus Cloacamonas acidaminovorans] Length = 1146 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1037 (37%), Positives = 591/1037 (56%), Gaps = 39/1037 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA ++ ++ PA+AITD NLF A++F + A AGI+P Sbjct: 2 SFVHLHNHTQYSMLDGACRVDRMIKLAKEYAMPAVAITDHGNLFGAIDFYKTAKNAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQS 128 I+G + I D T + + + ++LL +GY+ L++L S Y+ +G Sbjct: 62 ILGIEAYIINGDLESETGKNEIRY----HLILLAQNEQGYKNLMKLSSYSYI--KGFYYK 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI + L++ +EGLI L+ G I + + Q AE+ L +K LF + Y+ +Q Sbjct: 116 PRISKTLLKQY-SEGLICLSACVKGEIPALIYNDRMQQAEEVALWYKDLFQEHFYIEIQD 174 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++ LA E+P+V TN+ +L++ DYEAHD+L+ + ++ DR Sbjct: 175 HNLEPEKKIMPRLIDLAKKLEIPMVLTNDCHYLNKNDYEAHDILLCIQTGKLLHDPDRLH 234 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T Y K+ EM +F D+PEA NT++IA L +LP E Sbjct: 235 YGTNQLYFKSPEEMKELFPDVPEAYNNTLKIADMVDLELHYDKFLLPNI----------E 284 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVADF 363 E + G +R AK + + +QR+++EL VI RM F+GYFLIV D Sbjct: 285 TPPEFK---TMGEYLRFLCYENAKIKYPDLNETIKQRIEYELEVIDRMGFNGYFLIVKDI 341 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I A+K ++PVGPGRGSGAGS+ AY L IT IDPL++ L+FERFLNPDR+SMPD DIDFC Sbjct: 342 IDNARKQSVPVGPGRGSGAGSIVAYLLDITQIDPLQYGLVFERFLNPDRISMPDIDIDFC 401 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 R +VI Y+ +YG E V QIITF +L AK+ ++DV R L +P S+ + + K I + Sbjct: 402 AQNRSKVIDYIIQRYGRESVTQIITFSTLGAKSVIKDVARVLSVPASEANAITKTIQGNK 461 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +A F ++ + + S+ LEGL R S H AG+VI L+ V Sbjct: 462 TLD---EAYNQYPEFSSLINSNDLYRTIFKHSKVLEGLVRQTSVHPAGVVIAPGDLTDYV 518 Query: 544 PMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 P+ + + + QF KW+ L+K D LGLK LTL+QK++D + Q + + +D++ Sbjct: 519 PLACSTQKGEEKVILVQFEGKWLNDLKLLKMDILGLKNLTLIQKTIDLVKQAQDIDIDIN 578 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I +D + Y++L T G+FQ ES GMR+ L ++P+ IED+IA+V+LYRPGP+ I Sbjct: 579 HISLEDKKVYNILGKGETDGVFQFESDGMRKYLIELKPNKIEDLIAMVALYRPGPMQFID 638 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y RK+G+EK+V HPL++ LKET GV IYQEQVMQIA+ + G++ EAD LR+AMGK Sbjct: 639 SYIARKHGREKVVYDHPLMENALKETYGVTIYQEQVMQIAREMGGFTGGEADSLRKAMGK 698 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + M + +E+F GA + + I++ +FA+Y FNKSHA YA+++YQTA++ Sbjct: 699 KNSDLMQQYQEKFRQGAKAQNVPDAVIEKIWQDWLRFAEYAFNKSHATCYALVAYQTAYL 758 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YPVEF+AA ++LE D+ KI + ++ I+I+PP++N +F+V + + L Sbjct: 759 KAYYPVEFMAALLSLE-DDPTKIPGKIEVCKKMGIKIIPPNINRSDSEFRVHGKEVLFGL 817 Query: 840 AAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIK +G R I+E + + P+ S+ +FC+R+DS +N+ +LESL+ +GA+D +R Sbjct: 818 RAIKNLGDAAMRDIIEDRNQNGPYTSIFEFCNRLDSTSVNKTILESLIASGAMDELEGTR 877 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF-SVENSS--VRFENE 955 Q ++ +++ +K+R IF D SVE S + E E Sbjct: 878 AQKWNVIELALQFSSNDQKDRKRGQSTIFDFMDTEDEDNNYYPPLPSVEPWSYIYQLEKE 937 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + VLGFY SGHPL Y+ +++ + + T + +A ++ + +KK KG+ I Sbjct: 938 KEVLGFYLSGHPLFEYRSLIKHL-TNANSSTGKTKNNGELLIAGIINNISKKKDNKGNPI 996 Query: 1016 GWVTFSEPAKEYEANFF 1032 +V F + ++E F Sbjct: 997 AFVEFEDLCGKFEVPLF 1013 >gi|169824700|ref|YP_001692311.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328] gi|167831505|dbj|BAG08421.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328] Length = 1161 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/1059 (35%), Positives = 597/1059 (56%), Gaps = 62/1059 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G + +LDK Q AIAITD ++F ++F ++ I+P Sbjct: 4 TFTHLHVHTEYSLLDGFSPIEKLLDKAKDLQMKAIAITDHGSMFGTVKFYKECKKRNIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ +D+ K+ N + +VLL +GY L+++VS Y+ + Sbjct: 64 IIGCEIYTTNKDH-KIKNPENKFYN---HLVLLAKNQQGYSNLMKIVSLGYV-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ + L++ +EG+I L+ G + + A+ K ++G+ Y+ LQ H Sbjct: 119 RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177 Query: 190 RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 RE VV ++A ++ LV TN+ ++ +EDY+ H++L+ + + + + Sbjct: 178 SS----REDMVVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDN 233 Query: 245 RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + P + +L++ +M +F + PEA+ENT +IA C+ L+ LP F + Sbjct: 234 KMSYIPGEFFLRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPDG--- 290 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + L+ GLE R A Q+ ++R ++EL+VI +M + YFLIV DF Sbjct: 291 -FTNSSYLKKLVFDGLEKRFANDE-----RLQEAKERCEYELSVIEKMGYVDYFLIVWDF 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC Sbjct: 345 IRFAKSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M + VD K +PN Sbjct: 405 YERREEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLL 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +++ FR+A + V +L+++++++EG+ RH STHAAG+VI P+ + V Sbjct: 465 NINID-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYV 523 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ + D +TQFNM +E+ GL+K DFLGL+TLT++ + ++ + + + V+ + Sbjct: 524 PLA--INKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMN 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D + + T TLGIFQ ES GMR L+ ++P +D+IA +L+RPGP++ I Y Sbjct: 582 ENDPKVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYI 641 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 + K+ +E + + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK Sbjct: 642 HNKHNEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKM 701 Query: 723 EEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+ ++ F I GA + G+ + +A I++L+ FA Y FNKSH+AAY+ Sbjct: 702 KVMEDGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYS 761 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +++ +TAW+K +YPVEFLAA ++ M N +I + ++AR+ I+I PP +N F V Sbjct: 762 LVAMRTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLEIEISPPDINYSLDKFDV 821 Query: 831 GDNRIYYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLV 886 DN I Y L AIK VGT + I+ + + F S DF R+ D +N+R +ESL+ Sbjct: 822 KDNSIIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLI 881 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEK 942 AGA G +R L+ +I Q KN N+F ++E+ D E+ Sbjct: 882 KAGAFSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREE 941 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGNN 994 F + S E+ VLG Y S HPL Y I+ + + Y E G Sbjct: 942 F---DKSELLRMEKEVLGIYLSDHPLRAYSSIIGQYSNFSTGDLEDDAYNEK--NFDGKR 996 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +++ ++ S +K T+ + +V F + E FP Sbjct: 997 VKVVGIIESINKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035 >gi|315585849|gb|ADU40230.1| DNA-directed DNA polymerase III alpha subunit [Helicobacter pylori 35A] Length = 1211 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1040 (37%), Positives = 596/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIRMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + E + + ++ + KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKSYAQNEGLNFE-DDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDTQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + + Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVACY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F G +++ L+ + ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|317179636|dbj|BAJ57424.1| DNA polymerase III subunit alpha [Helicobacter pylori F30] Length = 1211 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1040 (37%), Positives = 596/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + E + + ++ + KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RTKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F G +++ L+ + ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|229019828|ref|ZP_04176629.1| DNA polymerase III subunit alpha [Bacillus cereus AH1273] gi|229026053|ref|ZP_04182436.1| DNA polymerase III subunit alpha [Bacillus cereus AH1272] gi|228735269|gb|EEL85881.1| DNA polymerase III subunit alpha [Bacillus cereus AH1272] gi|228741435|gb|EEL91634.1| DNA polymerase III subunit alpha [Bacillus cereus AH1273] Length = 1095 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/1022 (36%), Positives = 600/1022 (58%), Gaps = 61/1022 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+ A ++ ++ + ++AITD N ++ + F + GIQPIIG I Sbjct: 1 MLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIGLTASI---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + + +P +VLL GYQ L+++ S ++ + K+ I WL Sbjct: 57 ---FSEEEEKSYP----LVLLAENEIGYQNLLKISSS--IMTKSKEG--IPKKWLAHYA- 104 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQV 200 +GLI ++ G G I++ + AE+ T++ +F + Y++LQ H D + ++ Sbjct: 105 KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFSN-FYISLQHHAIQDELLLQEKL 163 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSE 259 + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ D +YLK+ E Sbjct: 164 PEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKTDQYYLKSSDE 223 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE--LRNKAVA 317 M ++FS EA++NT++IA RC + H LP+F + E N+ LR Sbjct: 224 MEALFSHAEEAIQNTIKIAERCRVEIPFHVNQLPKF------PVPSNETNDTYLRRVCEE 277 Query: 318 GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 GL R G + + QRL+ EL+VI+ M FS YFLIV DF+++A +N+I GPG Sbjct: 278 GLRKRY-------GTPKEVHIQRLNHELDVISSMGFSDYFLIVWDFMKYAHENHILTGPG 330 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+IRYV++K Sbjct: 331 RGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDK 390 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497 YG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ ++L+ ++S+ Sbjct: 391 YGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--ITLKDAYEESQ 448 Query: 498 -FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + ++ +D+ VT Sbjct: 449 SLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAI-QEGHNDVYVT 507 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615 Q+ +E+ GL+K DFLGL+ LTLL+ + F+ ++ G +D+ +P D +T+ LL Sbjct: 508 QYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKHIDIRNLPLQDEKTFQLLGRG 567 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675 T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK +I +H Sbjct: 568 DTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKRRIEYLH 627 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 P + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D++++ F+ G Sbjct: 628 PDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQERKHFVQG 687 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 KNG +T + I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ A ++ Sbjct: 688 CLKNGYDETASEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTALLSSA 747 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855 + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T ++E Sbjct: 748 IGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQMEGNAIRYSLLSIRNIGMATVTALLE 807 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915 K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL +YA Sbjct: 808 EREGKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGALEYAN-- 865 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF----ENEQRVLGFYFSGHPLDVY 971 A + G D + K+ V+ + F E+ LGFY S +P Y Sbjct: 866 -----------LARDLG---DAVPKSKY-VQGEELPFIEQLNKEKEALGFYLSSYPTAQY 910 Query: 972 KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 + +++ I +++ + R + S + +T+K ++ ++TF + E EA Sbjct: 911 AKLGKELEIPSLAQAMRHKKKVQ-RAIVYITSVRVIRTKKFQKMAFITFCDQNDEMEAVV 969 Query: 1032 FP 1033 FP Sbjct: 970 FP 971 >gi|303235030|ref|ZP_07321654.1| DNA polymerase III, alpha subunit [Finegoldia magna BVS033A4] gi|302493885|gb|EFL53667.1| DNA polymerase III, alpha subunit [Finegoldia magna BVS033A4] Length = 1161 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/1056 (35%), Positives = 595/1056 (56%), Gaps = 56/1056 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G + +LDK+ + AIAITD ++F ++F ++ I+P Sbjct: 4 TFTHLHVHTEYSLLDGFSPIEKLLDKVEELKMKAIAITDHGSMFGTVKFYKECKKRNIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ +D+ K+ N + +VLL +GY L+++VS Y+ + Sbjct: 64 IIGCEIYTTNKDH-KIKNPENKFYN---HLVLLAKNQKGYSNLMKIVSLGYV-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ + L++ +EG+I L+ G + + A+ K ++G+ Y+ LQ H Sbjct: 119 RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177 Query: 190 RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 RE VV Q+A ++ LV TN+ ++ +EDY+ H++L+ + + + + Sbjct: 178 SS----REDMVVMENIPQIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDN 233 Query: 245 RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + P + +L++ +M +F + PEA+ENT +IA C+ L+ LP F E Sbjct: 234 KMSYIPGEFFLRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPEG--- 290 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + L+ GLE R A Q+ ++R ++EL+VI +M + YFLIV DF Sbjct: 291 -FTNSSYLKKLVFDGLEKRFANDE-----RLQEAKERCEYELSVIEKMGYVDYFLIVWDF 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC Sbjct: 345 IRFAKSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M + VD K +PN Sbjct: 405 YERREEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLL 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +++ FR+A + V +L+++++++EG+ RH STHAAG+VI P+ + V Sbjct: 465 NINID-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYV 523 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ + D +TQFNM +E+ GL+K DFLGL+TLT++ + ++ + + + V+ + Sbjct: 524 PLA--INKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMN 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D + + T TLGIFQ ES GMR L+ ++P +D+IA +L+RPGP++ I Y Sbjct: 582 ENDPKVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYI 641 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 + K+ +E + + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK Sbjct: 642 HNKHNEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKM 701 Query: 723 EEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 + M+ ++ F I GA + G+ + +A I++L+ FA Y FNKSH+AAY+ Sbjct: 702 KVMEDGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYS 761 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +++ +TAW+K +YPVEFLAA ++ M N +I + ++AR+ +I+I P +N F V Sbjct: 762 LVAMRTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLDIKIEEPDINYSLDKFDV 821 Query: 831 GDNRIYYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLV 886 DN I Y L AIK VGT + I+ + + F S DF R+ D +N+R +ESL+ Sbjct: 822 KDNSIIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLI 881 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSV 945 AGA G +R L+ +I Q KN N+F E +D+ + Sbjct: 882 KAGAFSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNDENDRDDFTRREE 941 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGNNIRL 997 + S E+ VLG Y S HPL Y I+ + + Y E G +++ Sbjct: 942 FDKSELLRMEKEVLGIYLSDHPLRAYSSIIDQYSNFSTGDLEDDAYNEK--NFDGKRVKV 999 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ S +K T+ + +V F + E FP Sbjct: 1000 VGIIESINKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035 >gi|147669904|ref|YP_001214722.1| DNA polymerase III catalytic subunit, DnaE type [Dehalococcoides sp. BAV1] gi|146270852|gb|ABQ17844.1| DNA polymerase III catalytic subunit, DnaE type [Dehalococcoides sp. BAV1] Length = 1170 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1022 (37%), Positives = 582/1022 (56%), Gaps = 47/1022 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ +SLL+G ++ ++ + A+AITD + F ++A AGI+PI Sbjct: 2 FCHLHVHTEFSLLDGMCRISQLVVRAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + + D T K + +VLL +GY LI+L SR +L + R Sbjct: 62 LGSEFYLAYGDRTAKTAADKNYY----HLVLLAKNNKGYHNLIQLSSRSHL-EGFYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ +EGL+ L+ SG + R N A + L +KK F + Y+ +QRH Sbjct: 117 IDKELLEKY-SEGLVCLSACPSGEVPRLILENRYDEAREAALWYKKTF-ENYYIEIQRHP 174 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + S ++ +A ++PLVATN++ +L +ED HD+L+ + + +VS + R ++ Sbjct: 175 MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234 Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE- 307 ++ YLK+ EM + D+P+A+ENT +IA C+ L LP DI K + Sbjct: 235 GEYFYLKSPQEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEI------DIPKGKT 288 Query: 308 -ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L + GL V + RL +EL+VI +F+ YFL+ D I++ Sbjct: 289 PDEYLADLCYEGLPVFYPDAG-------PEILDRLKYELDVIKTTEFANYFLVTWDIIRF 341 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 K+ + G RGS A S+ Y L IT +DP+++ L+FERFLN +R MPD D+DF DR Sbjct: 342 VKEKGLYYGV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDR 400 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YV KYG + V+QIITFG+L AKAA+RDVGRAL M Y+ VDR+ K+IP P H Sbjct: 401 REEVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDVGRALGMAYADVDRVAKVIPFSP-HM 459 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +A+ + S +E D V L++ ++K+EGL RHASTHAAG+VI PL+ VP+ Sbjct: 460 TLDKAMEESSELKEMYNQDAVVRNLVDAARKVEGLSRHASTHAAGVVISKDPLTDHVPLQ 519 Query: 547 RDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 R + + L +TQ+ M+ I K GL+K DFLGL L +L K+ + + G +D IP Sbjct: 520 RLSKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIP 579 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +T+ LL T+G+FQLE +GMR+ ++ ++P DI A+V+LYRPGP++ I + Sbjct: 580 LDDQKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFI 639 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K+G E I HP ++P+L+ET GVI+YQEQV+ IAQ SGY+L +AD+LR+AMGKKI Sbjct: 640 KSKHGLEPITYPHPALEPLLEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIA 699 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 M KQK F+ GA KNG ++ IA +F L+ FA Y FNK+HA +YA+I+YQTA++K + Sbjct: 700 AVMQKQKANFVDGAMKNGYTREIADEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKAN 759 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYY 837 YPVE++ A + D EK+ +AR I+++PP +N +F++ G +I + Sbjct: 760 YPVEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGANFEIEQAEGGVKKIRF 819 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAAIK VG I+ E A+ + S+ED C R + LN+RV+ESLV AGALD G Sbjct: 820 GLAAIKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDNMG- 878 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSV---- 950 R L +L NI AQ +K + + +F FS + + + +E S V Sbjct: 879 DRGTLFFNLPNILSLAQREQKMKDSNQTTMF----DLFSQQSPVPMTNLELEESPVTTRE 934 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + + E+ ++G + S HP Y ++ + + + +A MV S + TR Sbjct: 935 KLQWEKELVGIFISEHPFTPYASSALEVTTALCGQIDEELHNQLVTVAGMVASVRVSATR 994 Query: 1011 KG 1012 +G Sbjct: 995 EG 996 >gi|317178164|dbj|BAJ55953.1| DNA polymerase III subunit alpha [Helicobacter pylori F16] Length = 1211 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1039 (37%), Positives = 596/1039 (57%), Gaps = 73/1039 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF----IEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + P P F + + + E++ + KA GL+ RL + K H Q Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIGVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL--------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 471 RVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQV 528 Query: 513 -EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIK Sbjct: 529 WEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIK 588 Query: 571 FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 FDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 589 FDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGMF 647 Query: 630 QAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 648 QGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTY 707 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A Sbjct: 708 GTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKA 767 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 768 ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYI 827 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEAS 857 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 828 DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEER 887 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + K Sbjct: 888 TKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--AK 945 Query: 918 NRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ N+ ++F G +++ L+ + ++ E E LG + SG+PLD + Sbjct: 946 DKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005 Query: 972 KPILRKMGIKGYEESVATI 990 K IKG++ V +I Sbjct: 1006 KE-----EIKGFKNLVKSI 1019 >gi|261418242|ref|YP_003251924.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC61] gi|319767798|ref|YP_004133299.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52] gi|261374699|gb|ACX77442.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61] gi|317112664|gb|ADU95156.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52] Length = 1092 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/1032 (38%), Positives = 587/1032 (56%), Gaps = 65/1032 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL V S YSL + A ++ + + A+A+TD N L+ A+ F ++ GI+PI Sbjct: 2 FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG D+ + G+ FP +VLL + EGY+ L+E +S M + + K Sbjct: 62 IGVTADVALS--------GEEAFP----LVLLAANEEGYRHLLE-ISTMMQMGETKHMEE 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 L L + G+I +T GS G ++ + A++ L + +LF RLYV +QR Sbjct: 109 AALVRL----SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 164 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKDRPRV 248 E+ ++QLA +P+VATN+ ++ D A L A+ +++ + D R Sbjct: 165 QTRAPYEAGLLQLAEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLADIEDDNGR- 223 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 YL EM F+DLPEALEN++ IA +C ++ LP + + + + Sbjct: 224 ----YLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGET----AD 275 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR RL++ +A+ + D Y +RL EL+VI + FS YFLIVAD + + Sbjct: 276 SYLR---------RLSEQGLARRVPSADERYWRRLSHELDVIQSLHFSDYFLIVADVLAY 326 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++ I GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF R Sbjct: 327 ARRRGILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDGR 386 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVIRYV +KYG +RVAQIITFG+ AKAALR+ +AL +P + +++ L+P+ Sbjct: 387 REEVIRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSK--QS 444 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L Q A+ + FR A A P L ++QKLEGL RH S HAAG++I PL + VP+ Sbjct: 445 VTLRQWHAESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPL 504 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604 + + P+TQ+ M +E GL+K DFLGL+TLTL+++ + + Q G D+ +P + Sbjct: 505 -QPSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLN 563 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY LL T GIFQLESSGM++ L ++P +ED++A+ +LYRPGP+ I VY R Sbjct: 564 DEKTYALLGAGDTNGIFQLESSGMKRVLAELRPSQLEDVVAVNALYRPGPMQMIPVYIRR 623 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K G+E + HP ++ +L T GV+IYQEQ+MQIA L+G+SL +ADVLRRA+ KK K Sbjct: 624 KRGEEPVSYAHPDLETILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKAL 683 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + KQ + F++G NG K +A ++ + +FADYGFN+SHA +YA++SY A+MK HYP Sbjct: 684 LAKQHQAFVAGCVANGYPKAVAEELYRHIVRFADYGFNRSHAVSYALLSYAMAYMKAHYP 743 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 + F A +T + EK + +A + I ++ PSVN V + I LA +K Sbjct: 744 LCFYAVMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSFVEGSAIRLGLAMVKQ 803 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG+ + E A+ PF DF R+ K L R LE+L+ GA D FG R LL S Sbjct: 804 VGSAAKLIVEERKANGPFADFFDFAVRLLPKGLGRPALEALISVGAFDEFGADRASLLAS 863 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGF 961 +D ++AQWV+ A E G S K K++ +S S R E LGF Sbjct: 864 IDIAIEHAQWVQ-----------ALEAGGLSLK---PKYAAAHSWPLSERRRREAEFLGF 909 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HP V +P+L+ G VA ++G + + VV ++ +T++G + + T Sbjct: 910 AVTPHPAAVCRPLLQAAGAV----CVADVQGPSTVVGGAVVRIRKTRTKQGEEMAFFTVG 965 Query: 1022 EPAKEYEANFFP 1033 + + E EA FP Sbjct: 966 DESGELEAVAFP 977 >gi|317013227|gb|ADU83835.1| DNA polymerase III subunit alpha [Helicobacter pylori Lithuania75] Length = 1211 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1040 (37%), Positives = 597/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A++ + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGHLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + E D + ++ + +KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAQNEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YQERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK+ +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKSVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L A+KGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F G ++I L+ ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMDGGTKEQIILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 ++ IKG++ V +I Sbjct: 1005 FEE-----EIKGFKNLVKSI 1019 >gi|269795562|ref|YP_003315017.1| DNA polymerase III subunit alpha [Sanguibacter keddieii DSM 10542] gi|269097747|gb|ACZ22183.1| DNA polymerase III, alpha subunit [Sanguibacter keddieii DSM 10542] Length = 1181 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/1082 (36%), Positives = 599/1082 (55%), Gaps = 85/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +S FVHL VH+ YS+L+GA L ++ ++ Q AIA TD LF A +F ++A AG Sbjct: 7 RSEDFVHLHVHTEYSMLDGAARLGDLFEETKRVGQSAIATTDHGYLFGAYDFWKQATDAG 66 Query: 67 IQPIIGCQLDIDMQ----DNLKM-------TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 ++PIIG + + DN ++ + + + + EG L Sbjct: 67 VKPIIGVEAYVTPGTSRFDNTRVRWGDASQASDDVSARGAYTHLTMWARNNEGMHNLFRA 126 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S L Q + R+ L+ + GLI TG SG + A K + Sbjct: 127 SSLASLEGQMGKWPRMDRDLLERY-SPGLIASTGCPSGEVQTRLRLGHYDEAVKAAGELQ 185 Query: 176 KLFG-DRLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 +FG + YV L H G D E++V ++LA P+VATN+ ++ +ED + + Sbjct: 186 DIFGKEYFYVELMDH-GLDI--ETRVFKDLLRLAKDIGAPIVATNDLHYVRQEDSGSQEA 242 Query: 231 LMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 L+A+ + ++ DR + D +Y+K+ +EM ++ +LPEA +NT+ IA +C A Sbjct: 243 LLAINSGSTLTDPDRFKFDGDGYYVKSAAEMRRLWKELPEACDNTLVIAEQCEVSFNTAA 302 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P F +D E + + GL+ R G + R+R DFE VI Sbjct: 303 NYMPNFPAPAGED----ETSWFIKEVETGLQYRYPDGI------PTEVRERADFETKVIT 352 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFL+VADFI W+K NNI VGPGRGSGAGS+ AYA+ ITD+DPL L+FERFLN Sbjct: 353 QMGFPGYFLVVADFINWSKDNNIRVGPGRGSGAGSMVAYAMRITDLDPLVHGLIFERFLN 412 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+SMPDFD+DF + RR EVIRYV +KYG +RVAQI+T+G+++AK AL+D R L +PY Sbjct: 413 PDRVSMPDFDVDFDERRRGEVIRYVTDKYGEDRVAQIVTYGTIKAKQALKDSSRLLGLPY 472 Query: 470 SQVDRLCKLIPNDPA---HPVSLQAI--ADDSR------FREARLADPSVDRLLEISQKL 518 + D+L K +P PA +SL I DD R FR+ ADP R++E+++ + Sbjct: 473 AMGDKLTKAMP--PAIMGKDISLTGIFDPDDKRYSEAEEFRQVHAADPEAQRVVELAKGI 530 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R HAAG+++ PL ++P+ R ++ +TQF+ E+ GLIK DFLGL+ Sbjct: 531 EGLKRQWGVHAAGVIMSSEPLIDIIPIMRRLQDGAVITQFDYPKCEELGLIKMDFLGLRN 590 Query: 579 LTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT+L +L+ + G + +DL + DD TY LL+ TLG+FQL+ GMR L+ M+P Sbjct: 591 LTILDDALENIVMNGKEAIDLESLTLDDPNTYALLSRGDTLGVFQLDGGGMRTLLKLMRP 650 Query: 638 DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691 D EDI A+ +LYRPGP+ ++ Y RKNG +++V IHP ++ L E T G+I+Y Sbjct: 651 DNFEDISAVGALYRPGPMGANSHTNYALRKNGLQEVVPIHPELEEPLAEVLGTTHGLIVY 710 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVM IAQ+++G+SL +AD+LRRAMGKK K E+DKQ E F G + G S +++ Sbjct: 711 QEQVMSIAQIVAGFSLGQADILRRAMGKKKKSELDKQFEGFSGGMVERGYSMAAVKALWD 770 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L F+DY FNK+H+AAY V+SY TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 771 ILLPFSDYAFNKAHSAAYGVVSYWTAFLKANYPTEYMAALLTSVRDDKDKSALYLNECRR 830 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 I ++PP VN+ +F I + L A++ VG I+ A + F S DF Sbjct: 831 MGITVLPPDVNSSSANFTAVGKDIRFGLTAVRNVGANVVEAIVTTREAKQNFTSFTDFLD 890 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENI 926 +V + N+R +ESL+ AGA D + R L Q++D++ V++ ++ Sbjct: 891 KVPAVVCNKRTIESLIKAGAFDSLDHPRRALQVVHEQAVDSVIG----VKRKEAEGQFDL 946 Query: 927 FAHEKGTFSDKITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 FA D ++ FSV+ + FE E +LG Y S HPL + +L++ Sbjct: 947 FAGFGDEADDGMS---FSVDIPDLPDWEKKQLLAFERE--MLGLYVSDHPLSGLEHVLQQ 1001 Query: 978 MGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 E S+A + G+ + +A ++ S Q+K +++G+ VT + E Sbjct: 1002 AA----EVSIAKLLTDEDRPDGSTVVIAGLITSLQRKMSKQGNPWAAVTIEDLDGGVEVM 1057 Query: 1031 FF 1032 FF Sbjct: 1058 FF 1059 >gi|308064219|gb|ADO06106.1| DNA polymerase III subunit alpha [Helicobacter pylori Sat464] Length = 1211 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1040 (37%), Positives = 596/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTYNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + E + + ++ + KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAYKAREGLKERLF--LVPKEKHDQ-YKERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSVAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F G +++ L+ ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMDGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|154503521|ref|ZP_02040581.1| hypothetical protein RUMGNA_01345 [Ruminococcus gnavus ATCC 29149] gi|153795621|gb|EDN78041.1| hypothetical protein RUMGNA_01345 [Ruminococcus gnavus ATCC 29149] Length = 1157 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1052 (36%), Positives = 601/1052 (57%), Gaps = 50/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F ++A GI+P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYREARKQGIKP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+GC++ + + T G++ + +VLL GY L+++VSR + + Sbjct: 62 ILGCEVYVAPNSRFDRETAGGESRYH---HLVLLAENNTGYANLMKIVSRGFT-EGYYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 R+ L++ EG+I L+ +G + R ++ A+K L ++ +FG ++ +Q Sbjct: 118 PRVDKDLLRQY-HEGIIALSACLAGEVQRYLSRGLTEEAKKVALEYQDIFGKGNFFLEMQ 176 Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ +Q +QL+ + LV TN+ + ED + HD+L+ + + ++R Sbjct: 177 DHGIPEQQLVNQRQIQLSKETGIELVVTNDIHYTYAEDAKPHDILLCIQTGKKLDDENRM 236 Query: 247 RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R +Y+K+ EM ++F +ALENT +IA RC ++ LP++ D Sbjct: 237 RYEGGQYYVKSPQEMEALFPYAKQALENTQKIANRCEVEIEFGVTKLPKY-----DVPDG 291 Query: 306 EEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E NK GLE G +++ ++RL +EL+ I M + YFLIV DFI Sbjct: 292 MTSWEYLNKLCWEGLEKHY-------GEPSRELKERLRYELDTIRNMGYVDYFLIVWDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AK + I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R++MPD D+DFC Sbjct: 345 KYAKDHGIAVGPGRGSAAGSIVSYCLEITNIDPIRYQLLFERFLNPERVTMPDIDVDFCF 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV KYG +RV QI+TFG+L A+ +RDVGR + +PY+ VD + K+IP + Sbjct: 405 ERRQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDSIAKMIPQELN 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ + R+ DP V L+++ ++LEGL RH+S HAAG+VIG R + VP Sbjct: 465 ITID-KALQMNPELRKTYENDPQVKLLIDMCKRLEGLPRHSSMHAAGVVIGQREIDDFVP 523 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + R + TQF M +E+ GL+K DFLGL+TLT++Q ++ + ++D+ I ++ Sbjct: 524 LSRASDGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVQLAKSKNPELDMDQIDYN 582 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + + T T GIFQLES GM+ ++ ++P+ +EDIIA +SLYRPGP+D I Y Sbjct: 583 DKQVLSYIGTGKTDGIFQLESGGMKGFMKELKPNSLEDIIAGISLYRPGPMDFIPQYIRG 642 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM KK + Sbjct: 643 KNDAGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDV 702 Query: 725 MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 M K+++ F + G KNGI + A I++ + FA Y FNKSHAAAYAV+SYQT Sbjct: 703 MQKERQIFVYGDEENGVPGCIKNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQT 762 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K +YPVE++AA MT ++N K+ ++ RQ NIQI+ P +N +F V N I Sbjct: 763 AYLKYYYPVEYMAALMTSVIENPSKVAEYIYACRQMNIQILSPDINRGIGNFSVDGNNIR 822 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCF 894 Y LAAIK +G I+E + PF +LEDF SR+ K LN+R +E L+ +GALDC Sbjct: 823 YGLAAIKSIGRPVIAAIIEDRDEFGPFKNLEDFISRMSFKDGLNKRAIEHLIKSGALDCL 882 Query: 895 GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSS 949 G +R Q + Q +D++ + ++ + + + EK F K+ + ++S EN Sbjct: 883 GGTRKQFMSIYVQIVDHVNQEKKYAMTGQMTLFDMVGEEEKEQFEIKLPDVGEYSKEN-L 941 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIR--LAAMV 1001 + FE E VLG Y SGHPL Y+ RK + + EE+ + R + M+ Sbjct: 942 LAFEKE--VLGAYLSGHPLQEYEDKWRKSISATTLDFQPDEETGRAKVHDGTREIVGGMI 999 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K K T+ + +++ + E FP Sbjct: 1000 TAKTIKHTKTNQMMAFLSLEDLVGTVEVIVFP 1031 >gi|225847875|ref|YP_002728038.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium azorense Az-Fu1] gi|225643592|gb|ACN98642.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium azorense Az-Fu1] Length = 1172 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1056 (36%), Positives = 595/1056 (56%), Gaps = 44/1056 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA+ + ++ K A+ +TD N+F A+EF Q+ + G++PI Sbjct: 5 FVHLHLHTHYSLLDGAIKIKDLAKKAVEYGYKAVGLTDHGNIFGAVEFYQEMKSVGVKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IG + + + +G T + ++L G++ L++L S Y +G Sbjct: 65 IGME-SYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSLSYT--EG-FY 120 Query: 129 VRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + + W L E EGLI T G I + A+K K +FG+ LY +Q Sbjct: 121 YKPRIDWELLEKYHEGLICQTACLKGFIPNLLSKGQYEEAKKYAKRLKDIFGEDLYFEIQ 180 Query: 188 RHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS---Q 242 + G + E+ +++LA + +V TN+S +L+ ED AHDV+ A+ + + Sbjct: 181 VN-GLEEQEEANKGIIKLAKELGIKVVGTNDSHYLNPEDQPAHDVIKALQMKETLQSLQE 239 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRF-IEK 298 K + + + EM F E L+NT+EIA +C+ + + + P++ I Sbjct: 240 KGKAFKVKGLHFTSPEEMYEKFKGYEEYLKNTMEIAEKCNVEIDTAETRGYLFPKYQIPG 299 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + Q++ + + GLE RL + Q+YR+RL +E++VI M F+ YFL Sbjct: 300 IENPTQEDIKAYFEKLSKEGLEKRLEKEKNLSKEKLQEYRERLQYEIDVINNMGFAEYFL 359 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI +AK N IPVGPGRGS GS+ AY L IT+IDPL+ L+FERFLNP+R+SMPD Sbjct: 360 IVQDFINYAKNNGIPVGPGRGSAGGSLVAYCLGITEIDPLKHGLIFERFLNPERISMPDI 419 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC + R++VIRYV++KYG + VAQIITF +++K +RDV R L PY + D++ K+ Sbjct: 420 DVDFCMENREKVIRYVKDKYGEDSVAQIITFNFMKSKMVIRDVARVLGFPYQEADKIAKM 479 Query: 479 IPNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 I P +L + + + FR+ DP V +LL++++KLEG RH HAAGIVI Sbjct: 480 ILPGPIQGSTLTIDENLEANPDFRKLYETDPKVKQLLDLARKLEGSARHTGIHAAGIVIA 539 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 PL + VP+YRD + TQF MK +E+ GL+K DFLGLKTLT L + +R G+ Sbjct: 540 PGPLDEYVPVYRDKDGN-KATQFEMKTLEQLGLVKMDFLGLKTLTELDLMKKLIKERHGI 598 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +++ +P DD Y LL + T G+FQLES GM+ L ++P ++IIA+++L+RPGP Sbjct: 599 EINYQDLPLDDENVYKLLQSGKTTGVFQLESKGMQDLLVRLKPTVFDEIIAILALFRPGP 658 Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 + + +V Y RK+G++ I + +LKET G+I+YQEQ+M ++ +LSG+S++EAD Sbjct: 659 LMSGMVDEYIERKHGRKPIEYPFEEVKEVLKETYGLIVYQEQIMFMSNILSGFSMAEADT 718 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LR+A+GKK E M K K RF+ GA + G + +++ + KFA Y FNKSH+ AYA + Sbjct: 719 LRKAIGKKNPETMAKMKGRFVEGAVERGFDREKVEKLWDDIEKFASYSFNKSHSTAYAYL 778 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +Y TAW+KT+Y EF A ++ E+ N K D F I+++PP VN +F + Sbjct: 779 TYWTAWVKTYYTDEFFAVKLSTEV-NDSKFLNLLIDMENFGIKLLPPDVNKSMAEFYIES 837 Query: 833 NR-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + I + LA IK VG ++A+ I+ E + F + DFC R+D+K N+RVLESL+ AGA Sbjct: 838 PKNIRFGLARIKNVGESSAKEIVKEREKNGEFVDIFDFCERLDTKTANKRVLESLIKAGA 897 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-------HEKGTFSDKITLEKF 943 D R LL ++D Q +++ ++FA + K T+ D T K Sbjct: 898 FDFEKVDRAILLNNVDKAISSGQKARESKMAGQNSLFALTTTPVVNVKHTYED--TGIKK 955 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN------NIRL 997 E +++E E VLGFY SGHP++ YK L+ K E G ++ Sbjct: 956 LTEREKLKYEKE--VLGFYLSGHPINAYKKELKGKVAKIGEIYDLVFSGKRPEGDLKVKF 1013 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A +V + KKT+ G+ + +FS+ + + FP Sbjct: 1014 AGVVDEIKLKKTKSGNTMMMFSFSDETGQIDCRAFP 1049 >gi|255281425|ref|ZP_05345980.1| DNA polymerase III, alpha subunit [Bryantella formatexigens DSM 14469] gi|255267913|gb|EET61118.1| DNA polymerase III, alpha subunit [Bryantella formatexigens DSM 14469] Length = 1150 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1050 (36%), Positives = 595/1050 (56%), Gaps = 45/1050 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + + ++ + AITD ++ ++F + A A GI+P Sbjct: 2 NFTHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGAMYGVIDFYRAARAEGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + N G +VLL GY LI++VS ++ + Sbjct: 62 ILGCEVYVAPNSRFDRENTGGED--RYYHLVLLAENNTGYANLIKIVSAGFV-EGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L++ EG+I L+ +G I R + +K L ++++FG ++ LQ Sbjct: 119 RVDKELLRQY-HEGIIALSACLAGEIPRYLVRGLYEEGKKVALEYQEIFGKGNFFLELQD 177 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + Q+++++ + LVATN+ + D E HD+L+ + + +DR R Sbjct: 178 HGIANQQIVNQQLLRMSAETGIELVATNDVHYTLASDAEPHDILLCIQTGKKLQDEDRMR 237 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM +F +ALENT +IA RC+ ++ LPRF D + Sbjct: 238 YEGGQYYVKSPEEMAQLFPYALQALENTQKIADRCNVEIEFGVTKLPRF-----DVPEGY 292 Query: 307 EENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E NK GL +R A++ ++RL++EL +I +M + YFLIV DFI+ Sbjct: 293 TSWEYLNKLCFDGLALRYPPE------QAEELKERLNYELGIIQKMGYVDYFLIVWDFIR 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ ++I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD DIDFC + Sbjct: 347 YARDHDISVGPGRGSAAGSLVSYTLGITKLDPIKYNLLFERFLNPERVSMPDIDIDFCFE 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG +RV QI+TFG+L A+ +RDVGR + +PYS VD + K++P + Sbjct: 407 RRQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDIPYSVVDSVAKMVPQELNI 466 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ ++S R+ DP + RL++++++LEGL RH S HAAG+VI + + VP+ Sbjct: 467 TLD-KALQENSELRKIYEEDPQMHRLIDMAKRLEGLPRHTSMHAAGVVICQKAADEYVPL 525 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 R + TQF M +E+ GL+K DFLGL+TLT++Q ++ + + GV +D+ I +D Sbjct: 526 SRGSDGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKLVQKDTGVLLDMDKIDYD 584 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + L T T G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y Sbjct: 585 DKAVLNSLGTGKTDGVFQLESAGMQNFMKELKPQSLEDLIAGISLYRPGPMDFIPQYIRG 644 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN E I P + P+L+ T G I+YQEQVMQI + L GY+L +D+LRRAM KK Sbjct: 645 KNHPETITYDCPQLKPILEPTYGCIVYQEQVMQIVRDLGGYTLGRSDLLRRAMSKKKASV 704 Query: 725 MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 M+K++ F + G KNGIS+ +A I++ + FA Y FNKSHAAAYAV+SYQT Sbjct: 705 MEKERRNFVYGNEEEGVPGCIKNGISEQVANKIYDDMIDFAKYAFNKSHAAAYAVVSYQT 764 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 AW+K +YP+EF+A+ MT +DN K+ + R+ I+I+PP VN F V + +I Sbjct: 765 AWLKYYYPLEFMASLMTSVIDNPPKVAAYHMTCRKMGIEILPPDVNCGEGGFSVENGKIR 824 Query: 837 YSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L+AIK +G A + E + + SL++ R+ K +N+R LES + +GALD G Sbjct: 825 YGLSAIKSIGRPVIAALVEEREKNGRYTSLKNLVERMSGKDINKRTLESFIKSGALDSLG 884 Query: 896 YSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 +R Q++ Q D + + + + + + + EK + +I++ Sbjct: 885 ATRRQMMTVYSQVCDAVNQERKTSLAGQMSLFDFVGEEEKKHY--EISMPDVGEYEKEQL 942 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIR--LAAMVVS 1003 E+ VLGFY SGHPL+ Y+ + RK + EE+ + + R + M+ + Sbjct: 943 LAYEKEVLGFYVSGHPLEAYEELWRKRITNVTTDFQPDEETGIPLVQDQSRVTVGGMITA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K T+ + ++T + E FP Sbjct: 1003 KTIKYTKTNKTMAFLTLEDLLGTVEVVVFP 1032 >gi|225619527|ref|YP_002720784.1| DNA polymerase III subunit alpha [Brachyspira hyodysenteriae WA1] gi|225214346|gb|ACN83080.1| DNA polymerase III, alpha subunit [Brachyspira hyodysenteriae WA1] Length = 1236 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/987 (37%), Positives = 567/987 (57%), Gaps = 40/987 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSA 55 SFVHL VH+ YS+L+GA + ++ +D+ P IA+TD N+F A Sbjct: 2 SFVHLHVHTQYSILDGAARIKSLYSKKDKTKRLIPGLIDRAKELGMPGIAMTDHGNMFGA 61 Query: 56 LEFSQKACAAGIQPIIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 +EF +A GI PIIGC++ + + K+ N + + ++LL EGY L Sbjct: 62 MEFFSEAKDKGIIPIIGCEVYVAPKTRFDKKIENSEEK---SAMHLILLAKDKEGYNNLC 118 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +LV+ Y +G L E +GLI L+ G I A + A K Sbjct: 119 KLVTFGYT--EGFYYRPRVDHELIEKYNKGLICLSACMGGEIPIAIRKKDYKQASKLAEY 176 Query: 174 FKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +K +FG+ Y+ LQ H ++ S + QLA H + LV TN+ ++S+ED +AH++L+ Sbjct: 177 YKSIFGNDFYIELQDHNIPEEKALNSALYQLAKHHNIELVVTNDVHYVSKEDAKAHEILL 236 Query: 233 AVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAP 290 A+ + R + + + LK EM+ F+ LP+A ENTV+IA +C + + Sbjct: 237 AIQTKATLDSPRRYKFPSNEFHLKTEEEMMKSFAKLPKAFENTVKIAEQCQDLNIMTKTY 296 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 +P + E + + E LRN + GL + I K A D RL+ EL VI + Sbjct: 297 YMPNY---ELPN-GETETTALRNMCMDGLN-KYYNNNIPK--EAMD---RLEMELGVIGK 346 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYFL+V DFI +A+ +++ VGPGRGS AGS+ A+A IT ++PL ++LLFERFLNP Sbjct: 347 MGFEGYFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNP 406 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R SMPD D+DF D+R+ +I YV+ KYG + V+QI TFG+L ++ +RDV R + + + Sbjct: 407 ERKSMPDIDVDFQDDKREVIIDYVKEKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLA 466 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 DRL K IP+D V + D + + + + + EIS +L+GL R+ HAA Sbjct: 467 TADRLAKSIPDDVKRVVDIYDHPDCAALVKEIEGNRELKNMYEISTRLDGLVRNVGLHAA 526 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G++I P+ L P+Y+D ++ Q+ M ++E AGLIK DFLG+K L L++ ++ + Sbjct: 527 GVIISSHPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIK 586 Query: 591 QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 R G+++D+ IP DD Y + T G+FQ ES GMRQ L +QP +D+++ V+L Sbjct: 587 DRYGIEIDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVAL 646 Query: 650 YRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 YRPGP+++ + Y +RKN +++IV HP ++P+LKE+QGV+IYQEQ+M I++++ G++ Sbjct: 647 YRPGPLNSGMDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRVIGGFTA 706 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 +EAD LR+AMGKKI E+M+ +E+FI G + G K + +F+ + FA+YGFNKSH+ Sbjct: 707 AEADDLRKAMGKKIVEKMNSMEEKFIKGGLERGYDKELLTYLFDTMKGFAEYGFNKSHSV 766 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 YA+I+YQ A++K HYP+E+ A + + + +KI + + +Q NI+I+ SV Sbjct: 767 CYALIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEIKQKNIEIVTASVFESDAL 826 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F D +I Y+L A+KGVG A I E + F +LEDF RVD +NR+V E+L+ Sbjct: 827 FSQKDGKIVYALHAVKGVGIHAALAIQEEREKNGQFKNLEDFVKRVDVHLVNRKVYETLI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFS 944 GA FG++ LL SLD I +A +K + +F E + S + +EK Sbjct: 887 KCGAFSEFGHTESALLSSLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASLVIEKQV 946 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVY 971 S++ ENE+ VLGF HP Y Sbjct: 947 EYASNILMENEKEVLGFSLRYHPFARY 973 >gi|281358509|ref|ZP_06244989.1| DNA polymerase III, alpha subunit [Victivallis vadensis ATCC BAA-548] gi|281314991|gb|EFA99024.1| DNA polymerase III, alpha subunit [Victivallis vadensis ATCC BAA-548] Length = 1187 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/1030 (37%), Positives = 593/1030 (57%), Gaps = 48/1030 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YS+L+GA ++ +L + A+AITD + EF Q AGI PI Sbjct: 5 FVHLHLHTHYSMLDGACTVKGLLQLAQEHEMNAMAITDHGYMGGVEEFHQVLSGAGINPI 64 Query: 71 IGCQLDI---DMQD--NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 IG + + DM+D + K N+G ++LL +GY L +++S D Sbjct: 65 IGVEAYVAPGDMRDFDSNKPFNRGGF------HLILLCENEDGYSSLCKMMSAANK-DGF 117 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 RI +++ +GLI + G I + + + AE+ L + +FG D ++ Sbjct: 118 HYKPRIDKELMRQY-HKGLICTSACIGGEISQYYLQGDVKRAEQALGEYLDIFGRDNFFI 176 Query: 185 NLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 L H G + R+ +V+LA ++L L+ATN+ ++ +ED EAH++++ + +++ Sbjct: 177 ELMDH-GMEEERKCNKFLVELAKKNDLRLIATNDVHYMRKEDAEAHEIMLCIQTGARLAE 235 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 K P+ Y K+ +EM +F +LPE++ NT IA RCS + P + + + D Sbjct: 236 KHFRFPAPEFYFKSEAEMKELFRELPESITNTRLIAERCSMKFH-YVPEVNHYPKFYMPD 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ-----RLDFELNVIARMKFSGYF 357 + + N+LR +E R G + D RQ R+++EL VI + F YF Sbjct: 295 GRLADRNDLREVCYDNMEYRY--GFDPRKTPELDDRQKKILERMEYELGVIEKTGFISYF 352 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 +V+DFI+ AK +IPVGPGRGSGAGS+ AY ITDIDPLRF+L FERFLNP+R+S PD Sbjct: 353 FVVSDFIRHAKGQDIPVGPGRGSGAGSLVAYLTRITDIDPLRFNLFFERFLNPERVSPPD 412 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC+ RR EVI YV+ +YG + VAQI T+G L+AKA ++DV R L + +RL K Sbjct: 413 FDVDFCERRRGEVIDYVRGRYGFDSVAQICTYGQLKAKAVVKDVARVLGCDFEFGNRLSK 472 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP DP + +A+ + E DP + ++ + ++ LEGL R HAAG++IGD+ Sbjct: 473 MIPEDPKMTLD-KAVEQNKELAEKIETDPMIAKVWKFAKVLEGLNRQTGIHAAGVIIGDQ 531 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596 L LVP+ R SD V F E+ GL+K DFLGLKTLT+++ +LD + + G+ + Sbjct: 532 RLDNLVPLARSA-SDSMVVPFPAHPCEEQGLLKMDFLGLKTLTIIKDALDMIKKDYGIVI 590 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D IP DD +T+ +L T+ +FQLES GM+ + +E IIAL+++YRPGP+ Sbjct: 591 DTMKIPLDDPKTFEMLQRGDTVAVFQLESGGMQNLCRSFGVETLEHIIALLAIYRPGPMQ 650 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + RK G+EKI+ HPL++ LKET G+++YQEQ+MQ+ Q+L+G++L AD+LRRA Sbjct: 651 FIPDFIRRKKGEEKIIYDHPLMEDCLKETYGIMLYQEQIMQVVQVLAGFTLGGADILRRA 710 Query: 717 MGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 +GKK + + KQKE+F G + N I + +A I+E + FA YGFNKSH+AAY + YQ Sbjct: 711 IGKKKVDVLAKQKEKFFKGCKETNNIDEKLADQIWEKIKLFAGYGFNKSHSAAYGFVCYQ 770 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K +YPV+F+AA + E+++ E+I ++ I ++PP VN+ + F + I Sbjct: 771 TAYLKANYPVQFMAAILNGEIESAERIAFMINTCKEMGINVLPPDVNSSDIRFSTDNGNI 830 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L AIKGVG A I+E+ D F++ DFC R S +N R+LE L AGALD Sbjct: 831 RFGLGAIKGVGEVAASQIIESRQKDGKFETFLDFCERCGS-NVNSRMLEHLTRAGALDGL 889 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT------LEKFSVENS 948 G R Q+L + + +A ++R ++F G +D + +F E+ Sbjct: 890 GLRRSQILAIAEPMMAFAAGRARDRAAGQGSLFDLLDGGDADDACSVPIPDIPEFDKEDI 949 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILR---KMGIKGYEESVATIRGN-NIRLAAMVVSK 1004 ++E+ +LGFY +GHPLD Y ++R + I+ EE + N IR+A MV + Sbjct: 950 ---LKSEKELLGFYVTGHPLDPYAELVRTYSTVPIRSLEE----LNDNAQIRIAGMVNTF 1002 Query: 1005 QQKKTRKGSR 1014 QK ++ + Sbjct: 1003 TQKLSKNSGK 1012 >gi|332180545|gb|AEE16233.1| DNA polymerase III, alpha subunit [Treponema brennaborense DSM 12168] Length = 1179 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/1050 (36%), Positives = 588/1050 (56%), Gaps = 53/1050 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA + ++ + A+A+TD N+F AL F Q GI+P+ Sbjct: 29 FVHLHVHSDYSLLDGAAKVKTLVARAKELGMSALALTDHGNMFGALRFEQLCHKEGIKPL 88 Query: 71 IGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +GC+ + + K T QG + ++L+ EGY+ L+ L SR Y + Sbjct: 89 VGCEFYVAGSSRHEHKGTEQGNKYY----HLILIAKNVEGYRNLMMLTSRSYT-EGMYYK 143 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI ++E + GL+ L+ +G + + N ++ AE + ++ +FG + ++ LQ Sbjct: 144 PRIDEELIREY-SGGLVCLSACLAGQLPQLLLNNQNKEAEDLVRRYRDIFGAENYFIELQ 202 Query: 188 RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H G + +E +++ +A +P+V TN+ + +EDY A DVL+ + +D Sbjct: 203 DH-GIAQQKEVAPKLIDIARKLGVPMVVTNDIHYCLKEDYIAQDVLVCIGTKKT---RDD 258 Query: 246 PRVT----PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 PR + Y+K EM +F PE +ENT +A C + P+F KE Sbjct: 259 PRRMKFEGTEFYMKTGEEMAQLFPAYPEMIENTKRVADMCDLTI-------PQFSTKELK 311 Query: 302 DIQ---------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 D K +++ +R+ GLE R + ++ RQR ++EL +I +M Sbjct: 312 DCLPVYQIPPEFKTQDDYVRHLVYKGLEKRYPE-------ITEEIRQRAEYELGIIFQMG 364 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 FSGYFLIV DFI WAK+N+IPVGPGRGSGAGS+ AYA+TITDIDP RF+L+FERFLNP+R Sbjct: 365 FSGYFLIVWDFINWAKQNDIPVGPGRGSGAGSLVAYAMTITDIDPFRFNLIFERFLNPER 424 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+D C + R +VI Y + KYG +V I+TFG+L+AKA ++DV R L +P S+V Sbjct: 425 ISMPDFDVDICYEGRQDVIEYTRRKYGDPQVGHIVTFGTLKAKAVIKDVARVLDIPLSEV 484 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLA----DPSVDRLLEISQKLEGLYRHASTH 528 + L KL+P+ P + ++ +LA DP L ++ KLE R+ S H Sbjct: 485 NILTKLVPDGPKVHLKDAFEVNEKIPGSGQLAPYRNDPRYKELFDLCFKLEDNNRNTSLH 544 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 A+GIVIG L + P+Y+D ++ Q+ M IE GL+K D+LGLKTLTL++ + Sbjct: 545 ASGIVIGKSKLPEWAPVYKDSKTGKVAVQYTMDIIEPCGLVKMDYLGLKTLTLIKYAERI 604 Query: 589 LAQRG--VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + +R + + D +T+ L T +FQ ES GM++ L+ QP +EDI+AL Sbjct: 605 IRKRPGYEQFRADEVSETDEKTFDLFCAGQTSAVFQFESPGMQKILKQAQPRRLEDIVAL 664 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 +LYRPGP+D I Y K KI P + +L+ET GV++YQEQVMQ+AQ ++GYS Sbjct: 665 NALYRPGPMDYIPQYIEGKFDSSKITYPDPCLKSILEETYGVMVYQEQVMQVAQRIAGYS 724 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK E M +K +FI GA KNG + A +IFE++ FA YGFNKSHA Sbjct: 725 LGGADMLRRAMGKKKVEVMAAEKTKFIEGAVKNGFTAEHAADIFEIMIPFAGYGFNKSHA 784 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAY+V++Y+TA++K ++P EF+AA++T E+ + +K+ ++ + R ++I PP +N Sbjct: 785 AAYSVVAYRTAYLKANFPAEFIAANLTNEITSTDKLPEYITEGRSMGLEIDPPDINRSDK 844 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D RI + L IKG+G A I+ A+ P+ +F RV++ +N++ +E L Sbjct: 845 VFDVVDGRIVFGLLGIKGLGEAAADAIIAERKANGPYTDFMNFLDRVNTHDVNKKAIEVL 904 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKF 943 + GA D +R L +++ YA+ + ++F + G F+D E+ Sbjct: 905 IKTGAFDKLDKNRATLTANMERAIDYAESKKSAGRFGQVSLF-EDSGVQEFADFKYEEQP 963 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ ++G Y SGHPLD Y+ ++ G ++ ++ + Sbjct: 964 EIPVMEM-LNMEKELIGCYVSGHPLDKYRETIKNAATVTSATMGRAQEGKQYQIIGLLKN 1022 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + T+KG+++ + + ++ FFP Sbjct: 1023 IRTITTKKGAQMAFAQLEDLNGSFDLTFFP 1052 >gi|308185224|ref|YP_003929357.1| DNA polymerase III subunit alpha [Helicobacter pylori SJM180] gi|308061144|gb|ADO03040.1| DNA polymerase III subunit alpha [Helicobacter pylori SJM180] Length = 1211 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1041 (37%), Positives = 598/1041 (57%), Gaps = 77/1041 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKEDKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLMFLSSMAYL--K 113 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLT 173 G RI L+E ++G+I + G ++ R + A++ Sbjct: 114 GFYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACE 172 Query: 174 FKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 ++++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 173 YQEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAM 232 Query: 233 AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 233 CVAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDK 292 Query: 288 -HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + P P F + E + + ++ + +KA GL+ RL + K H Q Y++R Sbjct: 293 KNPPTPPSFKFTKAYAQNEGLNFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YQER 348 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 L+ E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 349 LEKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKY 408 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RD Sbjct: 409 DLLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRD 468 Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512 V R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 469 VARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAK 526 Query: 513 ---EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E L Sbjct: 527 QVWEYSLNLENLNRNAGVHAAALVVDSQKELWYKTPLFASEKTGGIVTQYSMKYLEPVDL 586 Query: 569 IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 IKFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SG Sbjct: 587 IKFDFLGLKTLTVIDDALKIIKTQHKIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SG 645 Query: 628 MRQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684 M Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK Sbjct: 646 MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKP 705 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 706 TYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQ 765 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + + Sbjct: 766 KAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVAR 825 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIME 855 + + R I++MPP +N+ DF V + +I + L A+KGVG ++I+E Sbjct: 826 YIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIE 885 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 886 ERTKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR-- 943 Query: 916 EKNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLD 969 K++ N+ ++F +G +++ L+ + ++ E E LG + SG+PLD Sbjct: 944 AKDKANEMMQGGNSLFGAMEGGIKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLD 1003 Query: 970 VYKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1004 EFKE-----EIKGFKNLVKSI 1019 >gi|240142402|ref|YP_002966912.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1] gi|240012346|gb|ACS43571.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1] Length = 1316 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/1084 (36%), Positives = 601/1084 (55%), Gaps = 82/1084 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNI---LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 FVHL V S +S G ++ + + + AA QPA+A+TD N+F +FS A G+ Sbjct: 6 FVHLNVLSDFSFSHGTRGVSGVKELVARAAALGQPALALTDDMNMFGVYKFSSAAAEKGV 65 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGK 126 QPI+G ++ + TN ++ LL S+ GY L L+ D +G+ Sbjct: 66 QPIVGTKIWV----RAGATN-------VFGTMQLLASSETGYVNLCRLLKVALFPDAEGR 114 Query: 127 QSVRICLSWLQEIG-------TEGLIMLTGGSSGPIDRAF--FFNSSQVAEKRLL----- 172 S S++Q +G ++ ++ L+GG G + R + ++Q A L Sbjct: 115 ISAHKDRSYVQ-LGHLLNAEYSQDVVCLSGGKDGFMSRVWDAARQNAQGAADWLSWVEDP 173 Query: 173 -TFKKLFGDRLYVNLQRH---RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 +FGDR + + R+ D RE+ ++ A P+VAT L+ +EE ++A Sbjct: 174 GGLAAVFGDRFFFEICRNGVETDEDFAREAWLLDTAARQGRPVVATTQVLYAAEERHDAL 233 Query: 229 DVLMAVAHS-----TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283 ++L AVA TV R RV +++++ +EM +F+DLP A +N +E+AR +F Sbjct: 234 EILSAVARKENGSITVGPGTLRARVEARYHMRSDAEMRELFADLPTAYDNALEVARCTAF 293 Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 + P LPRF D + E EL ++A GLE R + ++ Q+YR RL+F Sbjct: 294 KVAKRKPRLPRF-----DAAGRSEREELVHQARTGLEERFGELGTSEEAR-QEYRDRLEF 347 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL VI +M F GYFLIV+DFI+WA +++PVGPGRGSGAGS+ AYAL IT++DPLRF LL Sbjct: 348 ELGVIGKMGFDGYFLIVSDFIKWALAHDVPVGPGRGSGAGSLVAYALRITNLDPLRFGLL 407 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+SMPDFDIDFC R V++YV+ +YG + V+QI +FG +++K A++D GR Sbjct: 408 FERFLNPDRVSMPDFDIDFCIQGRASVVQYVRERYGSDLVSQIASFGEIKSKTAIKDAGR 467 Query: 464 AL------QMPYSQVDRLCKLIPNDPAHPVSLQAIADD-SRFREARLADPSVDRLLEISQ 516 L YS+ D + KL+P +P +L+ D+ R+ A L + ++ Sbjct: 468 VLTHERDGSYGYSETDGMTKLVPMVQGNPYTLKRAYDEIPDLRQFVDASEKTRVLFDNAR 527 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 K+EGL R HAAGI+IGD PL +L+P+ + +P+ QF++K E GL+KFDFLGL Sbjct: 528 KIEGLLRQRGVHAAGILIGDVPLEELLPVTWNATDGMPLAQFDLKGAEDVGLVKFDFLGL 587 Query: 577 KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 +TL++L+ + ++ RGV +D IP DD Y + T IFQ ES GM++AL M Sbjct: 588 ETLSVLKLARQYVKDSRGVDLDFDKIPLDDAGVYEIFARGMTNAIFQFESGGMKRALREM 647 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL--IDPMLKETQGVIIYQE 693 +P IED+IA +LYRPGP++ I VYN+ KNG+++ P P+L+ET G+++YQE Sbjct: 648 KPTRIEDLIAANALYRPGPMEMIPVYNDCKNGRQEPDYPEPREKTKPILEETFGIMVYQE 707 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVM +A+ ++G +L +AD+LRRAMGKKIK EMD QK F+ GA ++G S A +F+ + Sbjct: 708 QVMAVARAVAGLTLGQADLLRRAMGKKIKAEMDAQKAGFVKGALEHGTSARTAEELFDKI 767 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM--DNVEKIKKFCQDARQ 811 AKFA+YGFNKSH+AAYA+I+Y T W+K HYP EF AA ++ E +NV ++ +D Sbjct: 768 AKFAEYGFNKSHSAAYALIAYHTGWLKKHYPQEFYAAVLSFEAAKNNVHEMSLVKEDLDA 827 Query: 812 FNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867 F I ++PP VN F I + L IKG+ + E A+ PF ++ D Sbjct: 828 FGIPLLPPDVNRSTGQFAPERTEQGGAIRFGLVGIKGLSGGIDAMVAEREANGPFRTVAD 887 Query: 868 FCSRVDSKKLNRRVLESLVFAGA-----LDCFGYSRMQLLQSLDNIQKYAQWVEKN-RTN 921 F R + NR +E+L GA + G ++ Q +A ++ ++ Sbjct: 888 FGRRT-AGLFNRSQIENLAAVGAFVGLPIVAGGPPETNRAKAAIAAQFFANGAKREAKST 946 Query: 922 KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK---- 977 +FA E+ T +++ E S + E R +GFYF HPL + +P + K Sbjct: 947 DQFGLFAAEE-TAREELPEEMHSTAEWPDIPDREFRAVGFYFDQHPLKMLRPRMAKADLE 1005 Query: 978 -----MGIKGYEESVATIRGNNIRLA---AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +G +G + T R + A AM+ + ++ T +G R+ V S+ Y Sbjct: 1006 NEDVRVGTRGSVYEIMTARRESETRAVVVAMIENVRKTTTERGPRLD-VEASDTTGNYRF 1064 Query: 1030 NFFP 1033 +P Sbjct: 1065 YVYP 1068 >gi|108563880|ref|YP_628196.1| DNA polymerase III subunit alpha [Helicobacter pylori HPAG1] gi|107837653|gb|ABF85522.1| DNA polymerase III alpha-subunit [Helicobacter pylori HPAG1] Length = 1211 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1039 (37%), Positives = 597/1039 (57%), Gaps = 73/1039 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + E + + ++ + +KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAKNEGLNFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YKERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L A+KGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + + Sbjct: 887 RVKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKD 946 Query: 917 K-NRTNKHENIF--AHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971 K N + N A E GT +++ L+ + ++ E E LG + SG+PLD + Sbjct: 947 KANEMMQGGNSLFGAMECGT-KEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005 Query: 972 KPILRKMGIKGYEESVATI 990 K IKG++ V +I Sbjct: 1006 KE-----EIKGFKNLVKSI 1019 >gi|220928884|ref|YP_002505793.1| DNA polymerase III DnaE [Clostridium cellulolyticum H10] gi|219999212|gb|ACL75813.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10] Length = 1159 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1065 (36%), Positives = 610/1065 (57%), Gaps = 67/1065 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL VH+ YSLL+GA + +++ ++ ++AITD ++ +EF ++A GI+P Sbjct: 3 NFVHLHVHTEYSLLDGANRIKDLIQRVKELGMDSVAITDHGVMYGVVEFYKEAVENGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 I+GC++ K T Q K P +VLL GY+ L+++VS + + Sbjct: 63 ILGCEVY-----TAKRTMQDKQPGIDSDYGHLVLLAKNQIGYKNLMKIVS-LGFTEGYYY 116 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186 R+ L+ +EG+I L+ SG I A N + A + ++FG Y+ L Sbjct: 117 KPRVDYETLERY-SEGIIALSACLSGDIPSAILSNDYEKAVELANRLNRIFGQGNFYLEL 175 Query: 187 QRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Q H G + +++++ +PLVATN++ +L++E ++H++L+ + ++ + Sbjct: 176 Q-HNGINEQNLVNQHLIKMSGELGIPLVATNDAHYLTKESAKSHEILLCIQTGKTINDDN 234 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R D Y+K+ EM F ++ +ALENTV+IA C+ L+ LP F D+ Sbjct: 235 RMRFNTDEVYVKSPEEMYDNFKNIKQALENTVKIAEMCNVELEFGKLHLPSF------DV 288 Query: 304 QK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ LR + GL+ R + +++ RL++EL+VI++M + YFLIV Sbjct: 289 EEGYTPYEYLREQCYKGLKSRYGESC------SEEIVHRLEYELSVISQMGYVDYFLIVW 342 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A+ +I VGPGRGS AGS+ +YAL IT IDPL+++LLFERFLNP+R+SMPD DID Sbjct: 343 DFIRYARDQDIMVGPGRGSAAGSIVSYALGITSIDPLKYNLLFERFLNPERISMPDIDID 402 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR EVI YV KYG +RV+QIITFG++ A+A +RDVGRAL +PY VD + K+IP Sbjct: 403 FCYERRQEVIDYVIRKYGKDRVSQIITFGTMAARAVIRDVGRALDIPYGDVDAIAKMIPF 462 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ + ++ D L++ ++ LEGL RHASTHAAG+VI P+ + Sbjct: 463 QIGMNID-KALELNQELKKRYDTDEETQVLIDTARTLEGLPRHASTHAAGVVISKEPIVE 521 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 VP+ + + TQ +E+ GL+K DFLGL+TLT+++ ++D + Q G K+D+ Sbjct: 522 YVPL--QLNDNSVTTQVTAVPLEELGLLKMDFLGLRTLTVIRDAVDLVEQGHGRKIDIQQ 579 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I FDD + Y ++ T+G+FQLES+GM Q ++ +QP +EDIIA +SLYRPGP+D I Sbjct: 580 IDFDDKDVYKMIGEGRTVGVFQLESAGMTQFMKELQPTSLEDIIAGISLYRPGPMDQIPR 639 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y KN + I HP+++ +L T G ++YQEQVMQI + L GYS+ +D++RRAM KK Sbjct: 640 YIRNKNNPKHIRYHHPMLEKILDVTYGCMVYQEQVMQIVRELGGYSMGRSDLVRRAMSKK 699 Query: 721 IKEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 M+++++ FI GA KNG+ + A IF+ + FA Y FNKSHAAA Sbjct: 700 KISVMEQERKNFIYGITDEEGNEIVKGAVKNGVDEITANKIFDEMMDFASYAFNKSHAAA 759 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YAV++YQTAW+K +YP+EF+AAS+ + + +K+ ++ + + NI+++PP +N V F Sbjct: 760 YAVVAYQTAWLKFYYPIEFMAASINSFLGSSDKVSQYVNECKILNIKVLPPDINESNVKF 819 Query: 829 KVGDNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I + LAAIK VG + I+E + F S DFC R++ + +N+R +ESL+ Sbjct: 820 TVINKNIRFGLAAIKNVGENAIKSVIVERQQNGEFKSFLDFCQRIEGRDINKRCIESLIK 879 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKF 943 +GA D R +L+ + + K + +IF ++ D ++++ Sbjct: 880 SGAFDSLKVFRSKLMAVYERLLDGISQNRKKNMDGQLSIFDMMSEPQELLQEDYPDIKEY 939 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNN-------- 994 ++V E+ +LG Y SGHPL Y+ IL + + E + T +N Sbjct: 940 P---ANVLLAMEKEMLGLYVSGHPLSEYQDILETNVNLYSSEMFIDTDENSNDIELNSKK 996 Query: 995 ------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + +VVSK+ K T+ + + +V + E FP Sbjct: 997 LQDSMKVTVGGIVVSKKTKATKNNNLMAFVGLEDLYGTMELIVFP 1041 >gi|15835446|ref|NP_297205.1| DNA polymerase III subunit alpha [Chlamydia muridarum Nigg] gi|270285627|ref|ZP_06195021.1| DNA polymerase III subunit alpha [Chlamydia muridarum Nigg] gi|301337023|ref|ZP_07225225.1| DNA polymerase III subunit alpha [Chlamydia muridarum MopnTet14] gi|14194688|sp|Q9PJJ7|DPO3A_CHLMU RecName: Full=DNA polymerase III subunit alpha gi|7190859|gb|AAF39632.1| DNA polymerase III, alpha subunit [Chlamydia muridarum Nigg] Length = 1237 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1047 (36%), Positives = 590/1047 (56%), Gaps = 65/1047 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + K PA+A+TD NLF A++F + I+P Sbjct: 2 TWIPLHCHSQYSILDATCSIKKFVAKAVEYHIPALALTDHGNLFGAVDFYKTCKQNAIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + + K+ ++LL EGY+ L L+S + + Sbjct: 62 IIGCELYVAPSSRFDKKKERKSQVAN--HLILLCKDEEGYRNLC-LLSSLAYTEGFYYFP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L++ ++GLI L+ SG I +A S + EK LL ++ LF + + +Q H Sbjct: 119 RIDRELLKQ-HSKGLICLSACLSGSIAQAAL-ESEEALEKDLLWYQDLFQEDFFSEVQLH 176 Query: 190 RG----------------YDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEA 227 + Y ++ E Q V+ ++ + VATN+ +L +D+ A Sbjct: 177 KSSEEKIALFEEEWLRQNYYQFIEKQLKVKDAVLTVSKRLGISSVATNDIHYLDPDDWLA 236 Query: 228 HDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 H++L+ V ++ V + K + + + Y K+ EM +F+D PE + NT+ + Sbjct: 237 HEILLNVQSREPIRTAKQNTYVPNPKRKTYPSREFYFKSPQEMAELFADHPETISNTLIV 296 Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKE---EENELRNKAVAGLEVRLAQGAIAK---- 330 A RC+ L P ++ +D+QK+ E E N + A LE QG K Sbjct: 297 ADRCNLELDFVTKHYPIYVP---EDLQKKGSYSEEERYNASSAFLEQLCEQGLKTKYTPE 353 Query: 331 --GYHAQDY---------RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 G+ AQ + ++RL E +I Y LIV D I WAK + IPVGPGRG Sbjct: 354 LLGHIAQKFPEKDPLTVVKERLSLESTIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRG 413 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 SGAGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R++VI Y ++G Sbjct: 414 SGAGSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMIGREKVINYAIERHG 473 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499 E VAQIITFG+++AK A++DVGR L P S+V+ + K IP+ A S A+ D R Sbjct: 474 KENVAQIITFGTMKAKMAIKDVGRTLDTPLSKVNLIAKKIPDLNATIAS--ALESDPDLR 531 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 + + D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++ Sbjct: 532 QLYIDDAEAAEIIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYS 591 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTL 618 MK +E G++K DFLGLKTLT + + + ++ G+ + + +P +D T+ LL T+ Sbjct: 592 MKPVESVGMLKVDFLGLKTLTSIHVATKAIYKKTGILLQAATLPLNDRNTFSLLHQGKTM 651 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 GIFQ+ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL+ Sbjct: 652 GIFQMESRGMQELAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLM 711 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 +P+LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S AS Sbjct: 712 EPILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRASA 771 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NGI +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D+ Sbjct: 772 NGIDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDD 831 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-S 857 +EK+ K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E Sbjct: 832 IEKVGKLIQEAHSMNIPVLPPDINESGQDFEATQEGIRFSLGAVKGVGVSIVDSIVEERE 891 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + P+ SL+DF R D KK+ ++ LESLV AG+ +CF ++ + L+++ +K Sbjct: 892 KNGPYRSLQDFVQRSDFKKVTKKQLESLVDAGSFNCFEPNKDLAIAILNDLYDTFSREKK 951 Query: 918 NRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPI 974 F+ T K+T+ ++ S + + E+ +LG Y + HP+D K + Sbjct: 952 EAATGVLTFFSLNSMTKDPVKVTISPENIVRRSDKELLKREKELLGVYLTAHPMDAVKHL 1011 Query: 975 LRKMGIKGYEESVATIRGNNIRLAAMV 1001 L + + ++ G+ +R ++ Sbjct: 1012 LPFLSVVQSKDFEGLPHGSVVRTVFLI 1038 >gi|208435328|ref|YP_002266994.1| DNA polymerase III alpha-subunit [Helicobacter pylori G27] gi|208433257|gb|ACI28128.1| DNA polymerase III alpha-subunit [Helicobacter pylori G27] Length = 1211 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1041 (37%), Positives = 597/1041 (57%), Gaps = 77/1041 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + ++ ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLMFLSSMAYL--E 113 Query: 125 GKQSV-RICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLT 173 G RI L+E ++G+I + G ++ R + A++ Sbjct: 114 GFYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACE 172 Query: 174 FKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 ++++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 173 YQEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAM 232 Query: 233 AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 233 CVAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDK 292 Query: 288 -HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + P P F + E D + ++ + +KA GL+ RL + K H Q Y++R Sbjct: 293 KNPPTPPSFKFTKAYAQNEGLDFE-DDASYFAHKAREGLKERLI--LVPKEKHDQ-YQER 348 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 L+ E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 349 LEKEIGVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKY 408 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RD Sbjct: 409 DLLFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRD 468 Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL------- 512 V R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 469 VARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNDTAR 526 Query: 513 ---EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E L Sbjct: 527 QVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDL 586 Query: 569 IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 IKFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SG Sbjct: 587 IKFDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SG 645 Query: 628 MRQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE 684 M Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++ +LK Sbjct: 646 MFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELESILKP 705 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 706 TYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQ 765 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + + Sbjct: 766 KAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVAR 825 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIME 855 + + R I++MPP +N+ DF V + +I + L A+KGVG ++I+E Sbjct: 826 YIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIE 885 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L LD I + Sbjct: 886 ERAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLAHLDLICDAGR-- 943 Query: 916 EKNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLD 969 K++ N+ ++F G +++ L+ + ++ E E LG + SG+PLD Sbjct: 944 AKDKANEMMQGGNSLFGAMDGGTKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLD 1003 Query: 970 VYKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1004 EFKE-----EIKGFKNLVKSI 1019 >gi|167760733|ref|ZP_02432860.1| hypothetical protein CLOSCI_03118 [Clostridium scindens ATCC 35704] gi|167661620|gb|EDS05750.1| hypothetical protein CLOSCI_03118 [Clostridium scindens ATCC 35704] Length = 1158 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1052 (36%), Positives = 597/1052 (56%), Gaps = 49/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ ++AITD +F ++F + A A GI+P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKECVSRVKELGMDSVAITDHGVMFGVIDFYRAAKAVGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G +VLL T GY L+++VSR + + Sbjct: 62 ILGCEVYVAPGSRFDKEAVGSGD-NRYYHLVLLAETDLGYHNLMKIVSRGFT-EGYYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ + L+E +G+I L+ +G + + + + L ++++FG+ ++ LQ Sbjct: 120 RVDMEILKEF-HQGIIALSACLAGEVQKNIVRGMYEEGKAAALRYQEIFGEGNFFLELQD 178 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +Q ++++A ++ LVATN+ + ED +AHD+L+ + V+ +DR R Sbjct: 179 HGIQEQKLVNQSLLRMAKETQIGLVATNDVHYTYAEDEKAHDILLCIQTGKKVADEDRMR 238 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM ++F EALENT +IA RC+ ++ LP++ D + Sbjct: 239 YEGGQYYIKSEEEMKTLFPYALEALENTQKIADRCNVEIEFGVTKLPKY-----DVPEGY 293 Query: 307 EENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E NK GL+ R G ++RL++EL+VI M + YFLIV DFI+ Sbjct: 294 TSWEYLNKLCYDGLKERYPDGE-------GSLKERLEYELSVIKSMGYVDYFLIVWDFIK 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ ++I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD D+DFC + Sbjct: 347 YARDHDIMVGPGRGSAAGSIVSYTLGITSIDPIKYQLLFERFLNPERVSMPDIDVDFCFE 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG +RV QI+TFG++ A+ +RDVGR + +PY+ VD + K++P + Sbjct: 407 RRQEVIDYVVEKYGSDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDGIAKMVPTELNI 466 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + F+ D V L+++S++LEGL RH S HAAG+VI + + + VP+ Sbjct: 467 TLE-RALTVNPEFKRMYQEDEQVRELIDMSKRLEGLPRHTSMHAAGVVISQKAIDEYVPL 525 Query: 546 YRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLIP 602 + SD V TQF M +E+ GL+K DFLGL+TLT++Q ++ LA R G +++ I Sbjct: 526 --SLGSDGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVK-LASRSSGKDINMEQID 582 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 ++D + T T GIFQLES GM+ ++ ++P +EDIIA +SLYRPGP+D I Y Sbjct: 583 YNDKAVLDSIGTGRTDGIFQLESGGMKSFMKELKPQNLEDIIAGISLYRPGPMDFIPQYI 642 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN + I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM KK Sbjct: 643 KGKNHMDNITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKG 702 Query: 723 EEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 + M K+++ F + G NGI + A I++ + FA Y FNKSHAAAYAV+SY Sbjct: 703 DVMKKERQSFVYGNEAEGVPGCIANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTAW+K +YPVEF+AA MT ++N K+ ++ RQ I+I+PP +N F V + Sbjct: 763 QTAWLKYYYPVEFMAALMTSVIENPGKVSEYIYTCRQMGIEILPPDINKGEGSFSVDNGN 822 Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y LAAIK +G + I+ E A F +++DF R+ K++N+R +ES + +GA D Sbjct: 823 IRYGLAAIKSIGKPVIQAILTEREARGEFKNMKDFIERLSGKEVNKRTIESFIKSGAFDS 882 Query: 894 FGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 G +R Q + Q LD + + ++ + + + + +K F I L Sbjct: 883 LGGTRKQFMVIYVQILDQVNQERKYSMTGQMSLFDMVDEDQKAEFD--IPLPDVGEYEKE 940 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIR--LAAMV 1001 + E+ VLG Y SGHP++ Y+ RK + + E++ T + R + M+ Sbjct: 941 TKLAFEKEVLGVYLSGHPMEEYEEKWRKSISKTTLDFQLVEDTGHTKVSDGAREIIGGMI 1000 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K T+ + +VT + E FP Sbjct: 1001 TDKTIKYTKNNKVMAFVTLEDMLGSVEVVVFP 1032 >gi|148242424|ref|YP_001227581.1| DNA polymerase III subunit alpha [Synechococcus sp. RCC307] gi|147850734|emb|CAK28228.1| DNA polymerase III alpha subunit [Synechococcus sp. RCC307] Length = 1179 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1064 (37%), Positives = 603/1064 (56%), Gaps = 61/1064 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L HS YSLL+GA L ++ + PA+A+TD ++ A+E + AGI+P Sbjct: 6 SFVPLHNHSDYSLLDGATQLPAMVQRAVDLGMPAVALTDHGVMYGAIELLKLCSKAGIKP 65 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVP---SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + P P +V+L GY+ L++L S +L Sbjct: 66 IIGNEMYV-------VNGSIDDPQPKKERRYHLVVLAKNNVGYRNLVKLTSISHLRGMRG 118 Query: 127 QSV--RICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + + R C+ LQ+ +EGLI+ T G I +A VA + ++ L GD Sbjct: 119 RGIFARACIDKHLLQQY-SEGLIVATACLGGEIPQAILRGRMDVARQVASWYRDLLGDDF 177 Query: 183 YVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q H DR + ++ L+ + L+ATN++ +LS +D EAHD L+ V ++S Sbjct: 178 YLEIQDHGSPEDRIVNTGLLTLSRELGIQLIATNDAHYLSRDDVEAHDALLCVLTGKLLS 237 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPILPRF 295 + R R T Y+K+R EM +F D LP +AL+NT+ +A + + +PRF Sbjct: 238 DEKRLRYTGTEYIKSREEMERLFVDHLPAEVVQQALDNTMSVAEKVEDYDILGRYQMPRF 297 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 E + L GL RL A + + Y +R+ EL ++ +M F Sbjct: 298 PIPEG----HTPVSYLHEVTEQGLRQRLQLDADSS--IDELYGERMRHELKIMEQMGFPT 351 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D+I++A+ N IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SM Sbjct: 352 YFLVVWDYIRFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSM 411 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D DFC RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL Sbjct: 412 PDIDTDFCIARRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRL 471 Query: 476 CKLIPNDPAHPVSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 KLIP P L Q I++DS FR+ +DP V R +++++++EG + HAAG Sbjct: 472 AKLIPVVRGKPAKLAQMISEDSPEPEFRQKYESDPQVKRWVDMARRIEGTNKTFGVHAAG 531 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-A 590 +VI PL +LVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT+++K+L+ + A Sbjct: 532 VVIAADPLDELVPLQRNNDGQV-ITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVSA 590 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + G + D +P DD ETY LL GIFQLES+GMRQ + ++P +EDI ++++LY Sbjct: 591 EHGDRPDPDQLPADDPETYQLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALY 650 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+D ++ + NRK+G+E I + P+L+ET G+++YQEQ+M+IAQ L+GYSL Sbjct: 651 RPGPLDAGLIPKFINRKHGREAIEFADAKLQPILQETYGIMVYQEQIMRIAQDLAGYSLG 710 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 EAD+LRRAMGKK EM K + F+ GAS+ G+ +A +F+ + FA+Y FNKSH+ A Sbjct: 711 EADLLRRAMGKKKVSEMQKHRGIFVEGASQRGVDAKVADELFDQMVLFAEYCFNKSHSTA 770 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++YQTA++K HYPV ++AA +T+ EK++++ ++ I ++PP VN +DF Sbjct: 771 YGAVTYQTAYLKAHYPVAYMAALLTVNAGVTEKVQRYIANSNAMGIAVLPPDVNRSGIDF 830 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVDS-KKLNRRVLESL 885 RI + L+A++ +G A H + AS +D PF SL + C R+ +LNRR LESL Sbjct: 831 TPVGQRILFGLSAVRNLG-DGAIHALIASRQSDGPFTSLAELCDRMAGIGQLNRRSLESL 889 Query: 886 VFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTN--KHENIFAHEKGTFSDKITLE 941 + +GALD +R QL+ LD + +A ++R + + Sbjct: 890 IHSGALDALEPDGNRAQLMADLDLLLDWATARARDRASGQGNLLDLLGGGSEAEAASATP 949 Query: 942 KFSVENSSV-------RFENEQRVLGFYFSGHPLDVY---KPILRKMGIKGYEESVATIR 991 + + +SV + E+ ++GFY S HPL + +L +G+ E + Sbjct: 950 ASAPKAASVPDYAPTEKLRLEKELVGFYLSDHPLKQLQDTRRLLMPVGLGSLSE-----Q 1004 Query: 992 GNNIRLAAMVVSKQQK--KTRKGSRIGWVTFSEPAKEYEANFFP 1033 + R++ +V+ + + TRKG R+ + + EA FP Sbjct: 1005 SDRQRVSTLVMVPEMRVVTTRKGDRMAILQIEDLTGSAEAVVFP 1048 >gi|302873297|ref|YP_003841930.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B] gi|307688537|ref|ZP_07630983.1| DNA polymerase III DnaE [Clostridium cellulovorans 743B] gi|302576154|gb|ADL50166.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B] Length = 1204 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/1062 (36%), Positives = 607/1062 (57%), Gaps = 58/1062 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VH+ YSLL+G+ ++ ++ + A+AITD ++ +EF + A GI Sbjct: 2 SRDFVHLHVHTGYSLLDGSGKISLMVKRAKELGMNAMAITDHGVMYGCVEFYKAAKEVGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+G ++ + ++ + QG+ +VLLV + GY L+++VS + D Sbjct: 62 KPILGSEIYV-ASKSMHIKEQGRKN--DTHHLVLLVKNSTGYDNLMKIVSAASI-DGFYY 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ +L++ +EGLI L+ G + ++ +A++ L +K+ F D Y+ LQ Sbjct: 118 KPRVDHDFLKK-HSEGLIALSACLGGEVQGHILKSNLDIAKETALFYKETFKDGFYLELQ 176 Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ ++ ++ ++PLVATN+ ++++ED AHD+L+ + + +K R Sbjct: 177 NHGMREQIMVNEHLIAMSKELDIPLVATNDIHYINKEDSRAHDILLCIQTGKTIDEKGRM 236 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQ 304 P+ Y++++ EM +F + EAL+NTV+IA +C+F + H LP F + E D Q Sbjct: 237 SYQPEQFYIRSQEEMEELFGYVEEALDNTVKIAEQCNFDYEFHVSKLPNFPLPSEQDHFQ 296 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 LR+ GL A+ Y ++ + RLD+EL++I M + YFLIV D Sbjct: 297 Y-----LRDTCYKGL---------AELYEEITEEIKVRLDYELDIIKTMGYVDYFLIVWD 342 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI++A +N IP GPGRGS AGS+ A+ L IT IDP+++SLLFERFLNP+R+SMPD D DF Sbjct: 343 FIRFANENGIPTGPGRGSAAGSIVAFTLGITKIDPIKYSLLFERFLNPERVSMPDIDSDF 402 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +KYG+E V+QIITFG++ A+ +RDVGRA+ YS+VD + K+IPN Sbjct: 403 CYERRQEVIDYVVDKYGYESVSQIITFGTMAARMCIRDVGRAMNYSYSEVDAIAKMIPNM 462 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ +S + A + V L+++S+ LEGL RH STHAAG+VI +PL Sbjct: 463 LGINIE-RALEVNSELKAAYEENERVRDLIDVSKTLEGLPRHTSTHAAGVVIASQPLVSY 521 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601 VP+ ++ + VTQ+ M +E+ GL+K DFLGL+TLT+L+ ++D + Q + +++DL I Sbjct: 522 VPLQKN--DEAIVTQYTMGTLEELGLLKMDFLGLRTLTVLKDAVDMVKQNKRIEIDLDKI 579 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 D + Y ++ T+G+FQLES+GM ++ ++PD +EDIIA +SLYRPGP+ I Y Sbjct: 580 DDADPKVYTMVGEGKTVGVFQLESAGMTSFMKDLKPDSLEDIIAGISLYRPGPMAEIPRY 639 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K KI P ++P+L T GV++YQEQVM+I + L+GYS+ +D++RRAM KK Sbjct: 640 IEGKRNPAKIRYETPELEPILGVTYGVMVYQEQVMEIVRKLAGYSMGRSDLVRRAMSKKK 699 Query: 722 KEEMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 + M+++++ FI G +NGIS A IF+ + FA Y FNKSHAAAY Sbjct: 700 HKVMEEERQNFIYGIVDKDGNIEVPGCLRNGISVEAANKIFDQMMDFASYAFNKSHAAAY 759 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 AV++YQTA+M +YP EF+AA + M N EK+ + + A++ +I+++PP +N F Sbjct: 760 AVVAYQTAYMMCYYPTEFIAAMLNSVMGNNEKVAYYIRFAKEKDIEVLPPHINESYSKFT 819 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V +I + +A+IK VG I++ +K F DF ++D +N+R ESL+ + Sbjct: 820 VNKEKIRFGMASIKNVGGNVTDSIVKVREEKGKFKDFMDFAEKIDVSTVNKRAAESLIKS 879 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FAHEKGTFSDKITLEKFSV 945 GA D FG R QLL ++ + +K N+ F ++ T KI K Sbjct: 880 GAFDEFGVYRSQLLAIMEKVLDGVSSQKKRNIQGQLNLFQDFENDDSTMDIKIEYPKIKE 939 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVY------------KPILRKMGIKGYEESVAT-IR- 991 E+ + G Y SGHPLD Y I+ ++G E+ T IR Sbjct: 940 FEKKYILAMEKEMTGLYLSGHPLDEYVQTLNYVTNTNSSEIVSNQLLEGEEQLDNTKIRD 999 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + + +K TR + + ++ + E FP Sbjct: 1000 GDKVIIGGTIAEISKKITRNNAMMAFLRLEDLYGSVEVIIFP 1041 >gi|295110725|emb|CBL24678.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus obeum A2-162] Length = 1155 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1054 (37%), Positives = 605/1054 (57%), Gaps = 55/1054 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + +D++ + AITD ++ ++F + A AAGI P Sbjct: 2 NFTHLHVHTEYSLLDGSNKIKEYVDRVRELGMDSAAITDHGVMYGVIDFYRAARAAGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + + + +VLL +GY L+++VS+ ++ + Sbjct: 62 ILGCEVYV--APGSRFDREAGSGDDRYYHLVLLAENNQGYSNLMKIVSKGFV-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ LS L++ EG+I L+ +G + R + A+K L ++ +FG ++ LQ Sbjct: 119 RVDLSLLEKY-HEGIIALSACLAGEVARFLTRGMYEDAKKAALRYQDIFGKGNFFLELQD 177 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ Q++++ + LVATN+ + ED + HDVL+ + ++ +DR R Sbjct: 178 HGIPEQQNVNQQLLKMHRETGIELVATNDVHYTLAEDAQPHDVLLCLQTGKKLADEDRMR 237 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM +F PEALENT +IA+RC ++ LP+F E E Sbjct: 238 YEGGQYYVKSPEEMERLFPYAPEALENTHKIAQRCHVEIEFGVTKLPKFGVPE-GYTSWE 296 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 NEL GLE R ++ ++RL++EL+ I M + YFLIV DFI++ Sbjct: 297 YLNEL---CFKGLEERYQP-------VTEELKERLNYELSTIRNMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 ARDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV+ KYG + V QI+TFG+L A+ +RDVGR + +PY+QVD + K+IP + Sbjct: 407 RQEVIDYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVMDLPYAQVDTIAKMIPQELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + F++A + L++ +++LEGL RH S HAAG+VI + +S+ VP+ Sbjct: 467 ID-KALQMNPEFKKAYEEQKEIHDLIDTAKRLEGLPRHTSMHAAGVVISQKDVSEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 R + VTQF M +E+ GL+K DFLGL+TLT++Q ++ + Q GVK+D+ I ++D Sbjct: 526 RASDGSI-VTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVHLIEQDAGVKLDMQHIDYND 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + L T + G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y K Sbjct: 585 KKVLDSLGTGRSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N + I P ++ +LK T G I+YQEQVMQI + L+GY+L +D++RRAM KK M Sbjct: 645 NRPDTIKYDCPQLESILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKAAVM 704 Query: 726 DKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K+++ F+ G + NGIS+ A I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 705 EKERQNFVYGNEEEGVPGCIANGISEQTANKIYDDMIDFAKYAFNKSHAAAYAVVSYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YPVEF+AA MT ++ K+ ++ Q RQ NI+I+PP VN F V + I Y Sbjct: 765 FLKYYYPVEFMAALMTSVIEMPTKVAEYIQVCRQMNIKILPPDVNRGAYGFSVDNGAIRY 824 Query: 838 SLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+AIK VG ++E A+ + SL+DF R+ + +N+R +E+ + AGALDC Sbjct: 825 GLSAIKSVGRPVINALVEEREANGEYRSLKDFIERL-TGTVNKRAIENFIKAGALDCLEG 883 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SD------KITLEKFSVEN 947 +R Q + Y Q V+ K +N FA + F SD +I + + Sbjct: 884 NRRQ------KMLVYGQIVDSIAQEK-KNSFAGQMSLFDLVSDEEKKEYEIRMPDVEEYD 936 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKM------GIKGYEES--VATIRGNNIRLAA 999 + E+ VLG Y SGHPL+ Y+ I+ KM + EES G + + Sbjct: 937 KEMILAFEKDVLGIYLSGHPLERYRNIMEKMISAKTTDFQPDEESGIPKVYDGQKVIIGG 996 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ K K TR + ++T + E FP Sbjct: 997 MITEKTIKYTRNNKVMAFLTVEDLLGTVEIVVFP 1030 >gi|317182665|dbj|BAJ60449.1| DNA polymerase III subunit alpha [Helicobacter pylori F57] Length = 1211 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1040 (37%), Positives = 594/1040 (57%), Gaps = 75/1040 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKEDKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDDQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + E + + ++ + KA GL+ RL + K H Q Y++RL Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFE-DDASYFAYKAREGLKERLV--LVPKEKHDQ-YKERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ Sbjct: 350 EKEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL-------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 470 ARVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQ 527 Query: 513 --EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LI Sbjct: 528 VWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLI 587 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+E SGM Sbjct: 588 KFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIE-SGM 646 Query: 629 RQAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 647 FQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPT 706 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G Sbjct: 707 YGTIVYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQK 766 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+ A +T E + +E + ++ Sbjct: 767 AANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMVAMLTSESNKIESVARY 826 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEA 856 + R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 827 IDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEE 886 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + Sbjct: 887 RTKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--A 944 Query: 917 KNRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDV 970 K++ N+ ++F G +++ L+ + ++ E E LG + SG+PLD Sbjct: 945 KDKANEMMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDE 1004 Query: 971 YKPILRKMGIKGYEESVATI 990 +K IKG++ V +I Sbjct: 1005 FKE-----EIKGFKNLVKSI 1019 >gi|154484297|ref|ZP_02026745.1| hypothetical protein EUBVEN_02010 [Eubacterium ventriosum ATCC 27560] gi|149734774|gb|EDM50691.1| hypothetical protein EUBVEN_02010 [Eubacterium ventriosum ATCC 27560] Length = 1161 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1061 (35%), Positives = 594/1061 (55%), Gaps = 57/1061 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + I + ++AITD ++ ++F + A GI+P Sbjct: 2 NFAHLHVHTEYSLLDGSSKIKEITKRAKELGMNSLAITDHGVMYGCIDFYRAALENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + ++LL EGY L ++VS+ ++ + Sbjct: 62 IIGCEVYV--APGSRFEKEAGDNEDRYYHLILLAENNEGYANLCKIVSKGFV-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L++ EG+I L+ +G + + + ++ L ++K+FG ++ +Q Sbjct: 119 RVDYEVLEKY-HEGIICLSACLAGEVQKYLARGEYEKGKEAALKYEKIFGKGNYFLEMQD 177 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ Q+++++ E+ LV TN+ + +D EAHD+L+ + + +DR R Sbjct: 178 HGIPEQATVNQQLMRMSEELEIDLVCTNDVHYTFADDVEAHDILLCIQTGKKKADEDRMR 237 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 YLK+ EM +F P+A+ENT +IA RC+ + +P F E Sbjct: 238 YEGGQFYLKSPEEMYQLFKYAPQAMENTQKIADRCNVTFEFGVTKIPNFPVPE----GYT 293 Query: 307 EENELRNKAVAGLEVR--LAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 L+ GL R + +G + + H ++ +RL++ELN I M + YFLIV D Sbjct: 294 SWTYLKELCETGLHNRYPVFKGEVDQNCHLTKEELEERLNYELNTIKNMGYIEYFLIVWD 353 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI +AK N I VGPGRGS AGS+ +Y L ITDI+P+R++LLFERFLNP+R+SMPD D+DF Sbjct: 354 FIHYAKSNGIAVGPGRGSAAGSIVSYCLEITDIEPMRYNLLFERFLNPERVSMPDIDVDF 413 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV KYG + VAQI+TFG+L+A+ +RDVGR L MPY+QVD + K+IP + Sbjct: 414 CIERRQEVIDYVGRKYGKDHVAQIVTFGTLKARGVIRDVGRVLDMPYAQVDNIAKMIPQE 473 Query: 483 PAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 ++L A+ + + +DP V L+++S++LEGL RHAS HAAG+VI +P+ + Sbjct: 474 LN--ITLDGALKQNRELKTLYDSDPEVKYLIDMSRRLEGLPRHASMHAAGVVICGKPVDE 531 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 VP+ R + TQ+ M +E+ GL+K DFLGL+ LT++Q + F+ + RG+++DL Sbjct: 532 YVPLSRAADGSI-TTQYIMTTLEELGLLKMDFLGLRNLTVIQNAQRFIKKNRGIELDLMK 590 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I ++D + + T T GIFQLES+GM+ ++ ++P +EDIIA ++LYRPGP+D I Sbjct: 591 IDYNDKKVLDYIGTGNTEGIFQLESAGMKNFMKELKPQSLEDIIAGIALYRPGPMDFIPK 650 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y KN ++ + P + P+L+ T G I+YQEQVMQI + L+GYSL +D+LRRAM KK Sbjct: 651 YLEGKNNRDSVTYDCPQLIPILEPTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKK 710 Query: 721 IKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 + M+K+++ F + G KNGIS+ IA I++ + FA Y FNKSHAAAY V+ Sbjct: 711 KQAVMEKERQSFVYGNREEGVKGCIKNGISEEIANKIYDEMIDFAKYAFNKSHAAAYGVV 770 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTA++K +Y EF+AA +T MD K+ ++ R I+I+PP +N F Sbjct: 771 AYQTAYLKYYYAAEFMAAMLTSVMDISTKVAEYVYSCRSMGIEILPPDINEGESGFSAKG 830 Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 N I Y L AIK VG I+E + LEDF +R + +N+R +E+ + AGA Sbjct: 831 NSIRYGLTAIKNVGKNIIDGIVEEREKHGKYTDLEDFITRTANLGVNKRAIENFIKAGAF 890 Query: 892 DCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 D +R Q++ Q LD + K K+ +IF +D T EK+ V+ Sbjct: 891 DSLNATRKQMMMVYIQILDGVNK----ENKDAWEGQMSIF-----DMADDSTKEKYKVKM 941 Query: 948 SSV-------RFENEQRVLGFYFSGHPLDVYKPILRK----MGIKGYE----ESVATIRG 992 V + E+ V+G Y SGHPL + RK M I E E Sbjct: 942 PDVGEYTVDQKLAFEKEVIGIYASGHPLQAQEQKWRKHITNMSIDFTEPEEGEESKVPDK 1001 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + + ++ + +K T+ G ++ ++T + E FP Sbjct: 1002 SKVAVGGIISAITKKFTKTGQQMAFITLEDLVGTVEVVVFP 1042 >gi|323142803|ref|ZP_08077516.1| DNA polymerase III, alpha subunit [Succinatimonas hippei YIT 12066] gi|322417448|gb|EFY08069.1| DNA polymerase III, alpha subunit [Succinatimonas hippei YIT 12066] Length = 1206 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1068 (38%), Positives = 605/1068 (56%), Gaps = 88/1068 (8%) Query: 23 LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82 ++G S+ I+ + AA + PA+AITD +N+ ++F +AGI+PI+G DI++++ Sbjct: 1 MDGLESVGAIVKRAAALKIPALAITDISNICGFIKFYTACKSAGIKPIMGA--DIEVEEE 58 Query: 83 LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRICLSWLQEIGT 141 +K + T F + LL G Q L +++S +L D G + + L+ L++ + Sbjct: 59 VK-PGEKATSF----KLTLLAMDRVGQQNLYDILSDAWLRSDAGAFNAKTSLADLKKY-S 112 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EG+I+L G G I S+ RL + + F DR + R +R + E+ Sbjct: 113 EGIIILDG-FRGDIAAMAQRKDSKAIRARLKFYLENFNDRFCFEITRTNRIGESEFENFA 171 Query: 201 VQLAYTHELPLVATNNSLFLSEED---------YEAHDVLMAVAHSTVVSQKDRPR-VTP 250 + L + + VATN+++FL ED Y+ HDV +++ K+ R + Sbjct: 172 LNLCVEYNIAPVATNDTVFLFGEDNVGKDGFSDYQIHDVRVSIQAGCQRGNKEMARKYSK 231 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 + YLK +M ++F+D+PEAL+NT IA RC+ +++ P LPR+ D+ E Sbjct: 232 EQYLKTPEQMEALFADIPEALQNTRNIAERCNIEIELDHPRLPRY---PTGDLSPAEY-- 286 Query: 311 LRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR KA GLE RL + Q Y RL+ EL+VI M F GYFLIV +FIQW+ Sbjct: 287 LRKKAAEGLEERLEFLYPDEKERNEKRQTYVDRLNTELDVIINMDFPGYFLIVMEFIQWS 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K++ +PVGPGRGSG GS+ AY+L ITD DPLRF LLFERFLNP+R+SMPDFD+DFCQ R Sbjct: 347 KEHGVPVGPGRGSGGGSLVAYSLKITDFDPLRFDLLFERFLNPERISMPDFDVDFCQRNR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN------ 481 ++ + +V+N+YG+ V+QI TFG++ KAA++D GRAL M Y VD + K +P Sbjct: 407 EKTLEHVKNRYGNNAVSQIATFGTMAPKAAIKDAGRALGMGYGAVDFVAKQLPTQPGLTF 466 Query: 482 -------------DPAHP--VSL--QAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 DP P V+L +A+ DD R R L+ I+ +LEG+ R+ Sbjct: 467 KAAMGIGKDGKPCDPLAPDFVNLYQKALQDDDRQRV---------ELIHIALRLEGVIRN 517 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HAAG+VI ++ P+ D + +TQF+ K +E AGL+KFDFLGL TLT++ Sbjct: 518 IGKHAAGVVISPTRTAEFSPLMLDSDGN-SITQFDKKDVEHAGLVKFDFLGLTTLTIIDD 576 Query: 585 SLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +L + R K V++ +P++D E++ +L T +FQLES+GMR+ + MQPD Sbjct: 577 ALTMINARKAKHHEPPVNIHAVPYEDPESFAVLQQCETTAVFQLESAGMRKLIGQMQPDR 636 Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQ 692 +D+IALV+LYRPGPI + +V + RK+GKE++ P + P+L T GVI+YQ Sbjct: 637 FDDLIALVALYRPGPIKSGMVDHFVQRKHGKEEVAYPSPDFQDLDLKPILDSTYGVIVYQ 696 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQIAQ+L+GYSL AD+LRRAMGKK EM Q+ F GA K G IA+ IF+ Sbjct: 697 EQVMQIAQVLAGYSLGGADILRRAMGKKNPAEMAGQRSVFKEGAGKKGKDTDIAMKIFDQ 756 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA+YGFNKSH+AAYA++++ T W+KTHYP EFLAA MT + VEK+ + + + Sbjct: 757 VEKFAEYGFNKSHSAAYALVAWWTLWLKTHYPAEFLAAMMTADRQRVEKLVSYIAECNRL 816 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871 I++ PP V +F V D I Y + A+KG+G I++ A KPF DF R Sbjct: 817 KIKVNPPDVTEGLFNFTVNDAGEIIYGIGAVKGIGEDVVEDIIKERAQKPFKDFFDFVKR 876 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V K LNRR E+LV +GALD G SR Q++ S+ KYA + + ++FA Sbjct: 877 VGPKHLNRRTFEALVASGALDKLGPSRAQMMASIPTAMKYAVQESSDAASGQLDLFAAIS 936 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI- 990 T + T + R E+ VLG Y SGHP+++Y L + Y +++T+ Sbjct: 937 ETTAP--TFVACRPWSEKYRLYLEKNVLGLYLSGHPINIYIDEL----TRNYRSTISTLR 990 Query: 991 -----RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 R N + +V+S ++ ++ GS+ + + + E + + Sbjct: 991 PGTAQRPNPVTFYGIVISSTERTSKNDGSKFYILILDDGTSQLEFSLY 1038 >gi|270308619|ref|YP_003330677.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. VS] gi|270154511|gb|ACZ62349.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. VS] Length = 1170 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/1025 (37%), Positives = 585/1025 (57%), Gaps = 53/1025 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ +SLL+G ++ ++ + A+AITD + F ++A AGI+P+ Sbjct: 2 FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + + D T K + +VLL +GY LI+L SR ++ + R Sbjct: 62 LGSEFYLAYGDRTAKTAADKNYY----HLVLLAKNNKGYHNLIQLSSRSHI-EGFYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ +EGL+ L+ SG + R N A + L +KK F + Y+ +QRH Sbjct: 117 IDKELLEKY-SEGLVCLSACPSGEVPRLILENRFNEAREAALWYKKTF-ENYYIEIQRHP 174 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + S ++ +A ++PLVATN++ +L +ED HD+L+ + + +VS + R ++ Sbjct: 175 MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234 Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDIQK 305 D+ YLK+ EM + D+P+A+ENTV+IA C+ L ++H P + +K D+ Sbjct: 235 GDYFYLKSPEEMAEAYQDIPDAIENTVKIAEMCNVSLDFGRLHLPEIDIPADKTPDEYLA 294 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + L G + K Y +Q+ RL +EL+VI +F+ YFL+ D Sbjct: 295 D----------------LCYGGLPKFYPDASQEILDRLKYELDVIKTTEFANYFLVTWDI 338 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++ K+ + G RGS A S+ Y L IT +DP+++ L+FERFLN +R MPD D+DF Sbjct: 339 IRFVKEKGLYYGV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQ 397 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRR+EVI YV KYG + V+QIITFG+L AKAA+RD GRAL M Y+ VDR+ K+IP Sbjct: 398 DDRREEVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFS- 456 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 H +A+ + + ++ D V L++ ++K+EGL RHASTHAAG+VI PL+ V Sbjct: 457 LHMTLDKAMEESTELKDMFNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHV 516 Query: 544 PMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 P+ R + + L +TQ+ M+ I K GL+K DFLGL L +L K+ + + G +D Sbjct: 517 PLQRLSKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPL 576 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL T+G+FQLE +GMR+ ++ ++P DI A+V+LYRPGP++ I Sbjct: 577 AIPLDDAKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIP 636 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K+G E I HP + P+L+ET GVI+YQEQV+ IAQ SGY+L +AD+LR+AMGK Sbjct: 637 RFIKSKHGLEPITYPHPALAPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGK 696 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KI M KQK FI GA KNG + IA +F L+ FA Y FNK+HA +YA+I+YQTA++ Sbjct: 697 KIAAVMQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYL 756 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----R 834 K +YPVE++ A + D EK+ +AR I+++PP +N V+F++ N + Sbjct: 757 KANYPVEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDGVKK 816 Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + LAA+K VG I+ E A+ + S+ED C R + LN+RV+ESLV AGALD Sbjct: 817 IRFGLAAVKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDS 876 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE------N 947 G R LL +L NI AQ +K + + +F F + + S+E Sbjct: 877 LG-DRGTLLFNLPNILSLAQREQKLKDSNQTTMF----DLFGQQSPMPMPSLEMAESPVT 931 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 + + + E+ ++G + S HP Y +++ + + + +A MV S + Sbjct: 932 TREKLQWEKELVGIFISEHPFTPYASSAQEVTTALCGQIDEELHNQPVTVAGMVASVRVS 991 Query: 1008 KTRKG 1012 TR+G Sbjct: 992 ATREG 996 >gi|291520859|emb|CBK79152.1| DNA polymerase III catalytic subunit, DnaE type [Coprococcus catus GD/7] Length = 1156 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/988 (37%), Positives = 563/988 (56%), Gaps = 60/988 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + ++ ++ ++AITD ++ ++F ++A GI P+ Sbjct: 3 FTHLHVHTEYSLLDGSNKIKELIARVKELGMDSVAITDHGVMYGVIDFYKEAQKQGIHPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + G +VLL GY L+++VS+ + + R Sbjct: 63 IGCEVYV--APGSRFDKSGNMSSNRYHHLVLLAENDTGYHNLMKIVSKGFT-EGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L+E EG+I L+ +G I A Q A ++FG D Y+ LQ H Sbjct: 120 VDKELLKEY-HEGIIALSACLAGEIPDALRKGLYQTALNAAQEMSEIFGEDHFYLELQDH 178 Query: 190 RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D+ +Q +++LA L LVATN+ + ED +AHDVL+ + V+ DR R Sbjct: 179 GIPDQKTVNQGLLRLAKDTGLELVATNDIHYTLAEDAQAHDVLLCIQTGKKVADTDRMRY 238 Query: 249 TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +Y+K+ EM S+F EA+ENT +IA RC ++ LP F E D + Sbjct: 239 EGGQYYVKSPEEMASLFPYAREAIENTHKIAMRCHVDIEFGHYKLPEFPVPEGYDSWEY- 297 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ G R Q + ++R+ +ELN I M F YFLIV DFI +A Sbjct: 298 ---LQKLVWDGFYERYPQAD-------EKLKERVSYELNTIKTMGFVDYFLIVWDFIHYA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+++I VGPGRGS AGS+ +Y L IT +DP+R++LLFERFLNP+R++MPD D+DFC +RR Sbjct: 348 KEHDIMVGPGRGSAAGSIVSYCLDITTLDPIRYNLLFERFLNPNRVTMPDIDVDFCFERR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG ERV QI+TFG++ A+ +RDVGR L +PY+ D + K+IPN+ + Sbjct: 408 QEVIDYVVRKYGKERVVQIVTFGTMAARGVIRDVGRVLDLPYAICDSVAKMIPNELGITI 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + ++ D S+ L++++++LEGL RH S HAAG+VI + + + VP+ R Sbjct: 468 D-KALKMNPELKKLYDGDDSIHNLIDMARRLEGLPRHTSMHAAGVVISPKAVDEFVPLSR 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDH 606 D+ TQ+ M +E+ GL+K DFLGL+TLT+++ ++ + G VD+ I ++D Sbjct: 527 GA-DDVITTQYTMTTLEELGLLKMDFLGLRTLTVIRNAVKLINADGRHHVDMHEIDYNDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + ++ T T GIFQLESSGM+ ++ ++P +EDIIA +SLYRPGP+D I Y KN Sbjct: 586 AVFDMIGTGKTDGIFQLESSGMKSFMKELKPHNLEDIIAGISLYRPGPMDFIPRYIKGKN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I P ++ +L+ T G I+YQEQVMQI L+GY L +D++RRAM KK + M Sbjct: 646 EPASITYECPQLEEILEPTYGCIVYQEQVMQIVMKLAGYDLGRSDLVRRAMSKKKADVMA 705 Query: 727 KQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ F+ G + NGI + A IF+ + FA Y FNKSHAAAY ++SYQTAW Sbjct: 706 KERQYFVYGNDELGVPGCIANGIDEATANRIFDEMTDFAKYAFNKSHAAAYTIVSYQTAW 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVEF+AA MT +DN K+ ++ RQ I+I+PP +N F V + RI Y Sbjct: 766 LKYYYPVEFMAALMTSVIDNSVKVAEYIMTCRQMGIKILPPDINHGVSSFSVDNGRILYG 825 Query: 839 LAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L+A+K +G I E + PF SL++F R+ K++N+R +E+ + AGA D FG + Sbjct: 826 LSAVKSIGRPVVAAIEQERTLAGPFTSLKNFIERMSGKEVNKRSIENFIKAGAFDSFGAT 885 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS----SVRFE 953 R Q + YAQ +++ ++ +NI S ++TL F E +R+ Sbjct: 886 RRQ------QMMVYAQIMDQVAQDRKKNI--------SGQMTLFDFMDEEEKQAFEIRYP 931 Query: 954 N------------EQRVLGFYFSGHPLD 969 N E+ VLG Y SGHPLD Sbjct: 932 NVGEYDKGTLLSFEKEVLGVYISGHPLD 959 >gi|210135627|ref|YP_002302066.1| DNA polymerase III subunit alpha [Helicobacter pylori P12] gi|210133595|gb|ACJ08586.1| DNA polymerase III alpha-subunit [Helicobacter pylori P12] Length = 1211 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1039 (37%), Positives = 595/1039 (57%), Gaps = 73/1039 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + + K F + L EGY+ L+ +S M L+ Sbjct: 61 EGIKPIIGMEAYIHNDDNLS-SKETKQRF----HLCLFAKNQEGYENLM-FLSSMAYLEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPID----------RAFFFNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ R + A++ + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D R+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----- 287 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 288 HAPILPRF-----IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + P P F K +++ + +KA GL+ RL + K H Q Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAKNEGLSFEDDASYFAHKAREGLKERLI--LVPKEKHEQ-YKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+ MPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVGMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE-ARLADPSVDRLL--------- 512 R L MPY + D KLIPN ++L+ + F E A +P + L+ Sbjct: 471 RVLDMPYKEADDFAKLIPNRLG--ITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQV 528 Query: 513 -EISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 E S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIK Sbjct: 529 WEYSLNLENLNRNAGVHAAALVVDSQKELWYKTPLFASEKTGGIVTQYSMKYLEPVDLIK 588 Query: 571 FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 FDFLGLKTLT++ +L + Q + VD + +D + Y + + T+GIFQ+E SGM Sbjct: 589 FDFLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMNDPKVYKTIQSGDTVGIFQIE-SGMF 647 Query: 630 QAL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQ 686 Q L + ++P EDIIA+++L RPGP+++ +V + NRK+G E I ++P+LK T Sbjct: 648 QGLNKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTY 707 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G I+YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A Sbjct: 708 GTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKA 767 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + + Sbjct: 768 ANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVACYI 827 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEAS 857 + R I++MPP +N+ DF V + +I + L A+KGVG ++I+E Sbjct: 828 DEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEER 887 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 A + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + K Sbjct: 888 AKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGR--AK 945 Query: 918 NRTNKH----ENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ N+ ++F +G +++ L+ + ++ E E LG + SG+PLD + Sbjct: 946 DKANEMMQGGNSLFGAMEGGVKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEF 1005 Query: 972 KPILRKMGIKGYEESVATI 990 K IKG++ V +I Sbjct: 1006 KE-----EIKGFKNLVKSI 1019 >gi|268610019|ref|ZP_06143746.1| DNA polymerase III DnaE [Ruminococcus flavefaciens FD-1] Length = 1135 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1045 (36%), Positives = 603/1045 (57%), Gaps = 52/1045 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL +H+ YSLL+GA L +++ I + Q A+AITD N++ A+EF +A AGI Sbjct: 3 SSDFVHLHLHTEYSLLDGACRLKPLMEHIKSLGQTAVAITDHGNMYGAVEFWNEAKNAGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTP-FPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQG 125 +PIIGC++ + + T + P + P ++LL EGY+ L++LVS + ++ Sbjct: 63 KPIIGCEVYV-----ARRTRHDRDPKLDSSPYHLILLCKNNEGYKNLVKLVS-IASIEGF 116 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184 R+ L L++ +GLI L+ +G I R ++ + A+ +T+ +FG+ ++ Sbjct: 117 YNKPRVDLELLKKY-HDGLICLSACLAGEIPRLLNNSTYEEAKAVAMTYLDIFGEGNYFI 175 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H +R + +L+ +PL ATN+ ++S++D E +VL+ + ++ + Sbjct: 176 EIQDHGIAAERKILPHLYRLSEETGIPLAATNDCHYISKDDAEMQNVLICIQTGKILGEP 235 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + D Y+K+ EM +F+ EAL+NT IA C+ + LP+F + D Sbjct: 236 NGMSFETDEFYVKSTEEMAELFAGHEEALKNTARIAEMCNVEFEFGNIKLPKFTVEGVTD 295 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E R+ G+ R + +K +RL++EL+VI RM ++ YFLIV D Sbjct: 296 ----NEAYFRDLCRKGMYERYGRSPDSK------VEERLEYELSVITRMGYTDYFLIVWD 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI++A+ +N+PVGPGRGSGAGS+ AY + IT IDP++F+LLFERFLNP+R+SMPDFDIDF Sbjct: 346 FIRYARDHNVPVGPGRGSGAGSLCAYCIGITGIDPMKFNLLFERFLNPERVSMPDFDIDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + R V YV KYG + V++II F +L+A+AA+RD GR + +PY+ D++ K I Sbjct: 406 CIEGRQSVKDYVVRKYGKDYVSEIIAFDTLKARAAVRDTGRVMSLPYALCDKVAKQI--- 462 Query: 483 PAHPVSLQAIADDSRFREARLA-----DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 ++ DD+ LA D SV +L++ ++KLEG+ RHASTHAAG+VI Sbjct: 463 -----DMRNTLDDALKESEELAQLYKSDRSVKKLIDTAKKLEGMPRHASTHAAGVVISAV 517 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 PLS LVP+ ++ D VTQ+ M +E GL+K DFLGL+ LT+++ +++ + + D Sbjct: 518 PLSDLVPLQKN--DDTVVTQYTMTVLESLGLLKMDFLGLRNLTIIRDAVNEIRRSEPDFD 575 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I F D Y +L+ T G+FQ ES+GM L + P+ +ED+I ++SLYRPGP+ + Sbjct: 576 IDKIDFADQNVYKMLSDGDTCGVFQFESAGMTARLMELCPERLEDLIVILSLYRPGPMKS 635 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I VY K + I HP++ +L +T G ++YQEQVM+I + ++GYS AD++RRAM Sbjct: 636 IPVYIENKKHPDSIKYKHPILKDILADTYGCMVYQEQVMEICRKMAGYSYGHADIVRRAM 695 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + M K++E+F+SG+ +NG+S+T+A +F+ + FA Y FNKSHAAAYA ++YQTA Sbjct: 696 AKKKHDVMLKEREKFVSGSVENGVSETVANEVFDEMVSFASYAFNKSHAAAYAYLAYQTA 755 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HY ++AA M+ M + +K+ ++ R I++ P VN F D +Y+ Sbjct: 756 YLKYHYRGIYMAALMSSVMGSSDKLAEYINSCRDNGIKVCCPDVNKSFRGFTFKDGVMYF 815 Query: 838 SLAAIKGVGTTTA-RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIK G+ A + I++ F L+DFC R++ ++LN++ LE+++ AGA D G Sbjct: 816 GLLAIKNAGSGLADKLILDRQQHGDFKGLQDFCERIEGRELNKKALENMIKAGAFDGLGL 875 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT-FSDKITLEKFSVENSSVR 951 +R Q+L S + + A ++ + +F +HE G S K EK + Sbjct: 876 NRRQMLDSYETFIEMAGEGKRGVIDGQLGLFRNEESHEMGVKISYKPEFEKKRL------ 929 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 F E+ G Y SG PLD YK I M + G + G N++L V S + Sbjct: 930 FAMEKEATGMYLSGDPLDSYKWISDLMHTDTVSGLSSPDTAVDGKNVKLLCTVESTKVHI 989 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 T++G ++ + S+ E FP Sbjct: 990 TKRGDKMCFAEVSDGTGVMECVVFP 1014 >gi|197303992|ref|ZP_03169024.1| hypothetical protein RUMLAC_02729 [Ruminococcus lactaris ATCC 29176] gi|197296960|gb|EDY31528.1| hypothetical protein RUMLAC_02729 [Ruminococcus lactaris ATCC 29176] Length = 1157 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/987 (37%), Positives = 574/987 (58%), Gaps = 38/987 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F ++A GI P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREARKQGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + N + + +VLL EGY+ L ++VS+ ++ +G Sbjct: 62 ILGCEVYV--APNSRFDREVTGGDDRYYHLVLLAENNEGYENLTKIVSKGFV--EGYYYK 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 L +G+I L+ +G + R + A+ R L ++++FG ++ LQ Sbjct: 118 PRVDKELLRTYHKGIIALSACLAGEVPRYLTKGMYEEAKDRALEYQEIFGKGNYFLELQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ Q+++L+ + LVATN+ + +D +AHD+L+ + +S ++R R Sbjct: 178 HGIPDQQLVNQQLMKLSQETGIELVATNDVHYTYADDEKAHDILLCIQTGKKLSDENRMR 237 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM ++F +ALENT +IA RCS ++ LP++ E Sbjct: 238 YEGGQYYVKSEEEMAALFPYARQALENTQKIADRCSVEIEFGVTKLPKYDVPEG----YT 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L+ GL+ R +Q+ + RL +EL+ I M + YFLIV DFI++ Sbjct: 294 SWEYLQKLCYEGLDQRYRT-------PSQELKDRLAYELDTIRHMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ +Y L IT IDP+ + LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIHYQLLFERFLNPERVSMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG + VAQI+TFG+L A+ +RDVGR + +PY+ VD + K+IP + Sbjct: 407 RQEVIDYVTRKYGKDCVAQIVTFGTLAARGVIRDVGRVMDLPYAYVDSIAKMIPQELGIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R+ +D +V L++++++LEGL RH S HAAG+VI +P+ + VP+ Sbjct: 467 ID-KALQMNPELRKLYESDETVTHLIDMAKRLEGLPRHCSMHAAGVVICQKPVEEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R + TQF M +E+ GL+K DFLGL+TLT++Q ++ ++ + + I ++D Sbjct: 526 RAADGTI-TTQFIMTTLEELGLLKMDFLGLRTLTVIQNAVQLARKKQPDLQIDKIDYNDK 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + T T GIFQLES GM+ ++ +QP +ED+IA +SLYRPGP+D I Y KN Sbjct: 585 AVLDYIGTGKTEGIFQLESGGMKNFMKELQPHSLEDVIAGISLYRPGPMDFIPQYIRGKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM KK M+ Sbjct: 645 DRSSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKAAVME 704 Query: 727 KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ F + G KNGI + A I++ + FA Y FNKSHAAAYAV+SYQTAW Sbjct: 705 KERKTFVYGDEETGVPGCIKNGIDEQTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAW 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVE++AA MT +DN K+ ++ RQ I+I+PP +N DF V I Y Sbjct: 765 LKYYYPVEYMAALMTSVIDNPTKVAEYIYVCRQMGIKILPPDINKGEADFSVDGGDIRYG 824 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFGY 896 LAAIK +G R I+ + F +LEDF +R+ S++L N+R++E+L+ AGALD G Sbjct: 825 LAAIKSIGRPVIRAIVNDRKELGEFRNLEDFITRISSRELMNKRLVENLIKAGALDVLGG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEKFSVENSSVR 951 +R Q + I + Q +KN ++F +K F ++ + +++ EN + Sbjct: 885 TRKQFMSIYIQIVDHMQQEKKNSMVGQMSLFDMVSEEQKEEFQIRMPDVGEYTKEN-LLG 943 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKM 978 FE E VLG Y SGHPL+ Y+ RK+ Sbjct: 944 FEKE--VLGVYVSGHPLESYEEEWRKV 968 >gi|297583642|ref|YP_003699422.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10] gi|297142099|gb|ADH98856.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10] Length = 1126 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1041 (36%), Positives = 595/1041 (57%), Gaps = 62/1041 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 ++ HL VH+ +SLL + ++++ ++ ++ A+A+TD NN++ A+ F + A GI+P Sbjct: 2 AYAHLHVHTEFSLLSSLIRIDDLTEQASSQGFTALAMTDLNNIYGAVSFYRACRARGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L ++ +++ PT S++L + GYQ L+ LV+ M + + V Sbjct: 62 ILGVELSME-----RLSLNSGRDVPT--SLLLYAKSFRGYQSLVRLVT-MACAREAEPYV 113 Query: 130 RICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNL 186 + E+ EG L++++ S G + + A L T + +FG+ +YV + Sbjct: 114 T-----MDELEAEGEELVVISPFSEGRMQLLAEEGRDEEASAFLKTIRNVFGEEDVYVEI 168 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++R R ++ + +P+VATN+ L + + A L A+ + + D Sbjct: 169 QNHWLRWERERMQRIRKWLTNERVPVVATNHVHALEPDQFGALQTLQAIKDGVRIEEIDE 228 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 PD YLKN EM F+ AL+ T EI +C L + ILP + + + Sbjct: 229 SLRAPDMYLKNEEEMREQFAKWNTALDVTEEIVAKCEVELPLGGQILPSYPVSDGETAA- 287 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LRN GL R YHA + +R+RL+ EL VI M + YFLIVADF Sbjct: 288 ---SLLRNWCEKGLYER---------YHAPEEKHRERLEKELQVIHDMGYEDYFLIVADF 335 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 + +A +N I GPGRGS AGS+ AY L ITD+DP+ + LLFERFLNP+R+SMPD DIDF Sbjct: 336 MDYAHRNGILTGPGRGSAAGSLVAYLLRITDVDPILYDLLFERFLNPERVSMPDIDIDFS 395 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RD+VI YV +YG +VAQI+TFG+L AKAALRD R L +P + VDRL KLIP P Sbjct: 396 DLDRDQVIHYVHERYGASKVAQIVTFGTLAAKAALRDTARVLGIPTADVDRLSKLIPARP 455 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ A+ + F +A P D LL+ + +EG+ RH S HAAG+V+ PL+ +V Sbjct: 456 NMTIT-AALEEAPAFNKAIREMPKGDLLLKTALDIEGIARHTSIHAAGVVMSKDPLTDIV 514 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602 P+ + L +TQF M +E GL+K DFLGL+ L+ +++ + + ++ G +DL+ +P Sbjct: 515 PL-QPSNDGLTITQFPMGDLEDLGLLKMDFLGLRNLSFMERIAETVKEKTGEALDLTRLP 573 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D + LL T GIFQLES GMR+ L+ ++P+ EDI+A+ +LYRPGP++ I +Y Sbjct: 574 LEDERMFALLGKGETNGIFQLESQGMRRVLKQLKPERFEDIVAVNALYRPGPMEQIPLYI 633 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RKNG+E + H + +L T GV+IYQEQ+MQIA ++G+SL+EAD+LRRA+ KK K Sbjct: 634 RRKNGEEPVTYPHEDLREILAPTYGVMIYQEQIMQIASKMAGFSLAEADMLRRAVSKKKK 693 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EE+++ + F+ GA G ++ A ++EL+ +FA+YGFN+SHA AY++IS + AW+KT Sbjct: 694 EELERSRTLFVEGAVGRGYAEDEATRVYELIERFANYGFNRSHAVAYSMISCRLAWLKTV 753 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 +P F+AA M + +K+ ++ +A+Q +++ PSV F V + I +L I Sbjct: 754 HPEAFMAALMEQSVHAPDKLVRYIAEAKQMGLRVSGPSVQRSSRRFTVNNGEIVMALQVI 813 Query: 843 KGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 + G A I+ A ++ PF SL DFC RV K ++R+ +ESL+ AGA+D FG R L Sbjct: 814 RHTGHHAAAEIIRAREEEGPFGSLFDFCKRVSLKIVSRKTVESLIMAGAMDDFGVDRTSL 873 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL++ ++ + + ++F E+G D + ++ + + + E+ V+GF Sbjct: 874 FASLEDAFQFG-----DEDAEGFSLFEQEEGE-PDYRQGGRMTLMD---KLDEEREVMGF 924 Query: 962 YFSGHP-------LDVYK--PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 Y SGHP L YK IL MG+ + +V RLA M+ + +T+KG Sbjct: 925 YLSGHPVEDDLELLKTYKRQSILEAMGVASEKMTV--------RLAGMIEHIRLIRTKKG 976 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 ++ +V+ S+ + FP Sbjct: 977 DQMAFVSMSDETGAMDITVFP 997 >gi|256832318|ref|YP_003161045.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603] gi|256685849|gb|ACV08742.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603] Length = 1181 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1068 (36%), Positives = 582/1068 (54%), Gaps = 65/1068 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA L+++ + A Q IA TD +F A EF KA AAG++PI Sbjct: 8 FVHLHVHTEYSMLDGAARLDDLFQETARLGQHTIATTDHGYIFGAYEFWSKARAAGVKPI 67 Query: 71 IGCQLDI-------DMQDNLKMTNQGK----TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IG + + D L + + L EG L + S Sbjct: 68 IGVEAYLTPGTSRFDQTRRLWGEQSQREDDVSARGAYTHFTLWARNNEGLHNLFRMSSLA 127 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 L Q + R+ LQ +EGLI +G S + A + +++FG Sbjct: 128 SLEGQMGKWPRMDRELLQTY-SEGLIASSGCPSSEVQTRLRLGQFDEALRAAGEMQEIFG 186 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 + YV L H + S+++++A PLVATN+S ++ +D + + L+ + Sbjct: 187 KENFYVELMDHGLSIENRVRSELLEVARKINAPLVATNDSHYVRRDDAASQEALLCINSG 246 Query: 238 TVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + + DR + D +Y+K+ EM ++ D+PEA +NT+ IA +C A +P+F Sbjct: 247 STLLDPDRFKFDGDGYYIKSAQEMRDLWRDIPEACDNTLLIAEQCDVSFNTSANYMPKFP 306 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 +D E + + GL R QG D R + FE+NVI +M F GY Sbjct: 307 CPPGED----ETSWFIKEVERGLHARYPQGI------PDDVRAQAKFEINVITQMGFPGY 356 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+ L+FERFLNPDR+SMP Sbjct: 357 FLVVADFINWAKNNGIRVGPGRGSGAGSMAAYAMRITDLDPLKHGLIFERFLNPDRVSMP 416 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DF + RR EVIRYV KYG +RVAQI+T+G+++AK AL+D R L P++ ++L Sbjct: 417 DFDVDFDERRRGEVIRYVSEKYGEDRVAQIVTYGTIKAKQALKDSSRLLGFPFAMGEKLT 476 Query: 477 KLIPNDPA---HPVSLQAIAD--DSRFREA------RLADPSVDRLLEISQKLEGLYRHA 525 K +P PA +SL I D D R+ EA DP R++E+++ +EGL R Sbjct: 477 KAMP--PAIMGKDISLTGIFDPQDKRYHEAEEFRQLHAGDPDAQRVVELAKGIEGLKRQW 534 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 HAAG+++ PL ++P+ R + +TQF+ E GLIK DFLGL+ LT+L + Sbjct: 535 GVHAAGVIMSSDPLIDIIPIMRRPQDGAVITQFDYPTCETLGLIKMDFLGLRNLTILDDA 594 Query: 586 LDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 LD + Q + V L + DD +TY LL TLG+FQL+ +GMR L M+PD EDI Sbjct: 595 LDNIVQNNKEPVILEDLLLDDRKTYELLARGETLGVFQLDGNGMRSLLRLMRPDNFEDIS 654 Query: 645 ALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQI 698 A+ +LYRPGP+ ++ Y RKNG++ + IHP ++ L E T G+I+YQEQVM I Sbjct: 655 AVGALYRPGPMGANSHTNYALRKNGQQAVTPIHPELEEPLAEILGNTYGLIVYQEQVMAI 714 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ L+GYSL +AD+LRRAMGKK K E+DKQ E F G G S ++++L F+D Sbjct: 715 AQKLAGYSLGQADILRRAMGKKKKSELDKQFEMFSQGMIDRGYSMQAVKTLWDILVPFSD 774 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 Y FNK+H+AAY V+SY TA++K +YP E++AA +T D+ +K + + R+ I ++P Sbjct: 775 YAFNKAHSAAYGVVSYWTAYLKANYPTEYMAALLTSVKDDKDKSALYLNECRRMGITVLP 834 Query: 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKL 877 P VN+ +F D I + L A++ VG I+ DK F S DF +V + Sbjct: 835 PDVNSSLANFAAVDRDIRFGLTAVRNVGGNVVDAIIATREDKGEFSSFTDFLDKVPAVVC 894 Query: 878 NRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAH---- 929 N+R +ESL+ AGA D G+ R L Q++D++ V++ ++FA Sbjct: 895 NKRTIESLIKAGAFDSLGHPRKALHIIHEQAVDSVIS----VKRKEAEGQFDLFAEFGSE 950 Query: 930 -EKG-TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK---MGIKGYE 984 E+G +FS + + + + FE E +LG Y S HPL + +L + + I Sbjct: 951 PEEGMSFSVDVPMLDDWDKKQLLAFERE--MLGLYVSDHPLSGIEHVLTQASDLAIAKLL 1008 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G+ + +A +V + Q+K +++G+ T + + FF Sbjct: 1009 ADEGRPDGSTVTIAGLVTTVQRKMSKQGNPWASATVEDLDGSIDVMFF 1056 >gi|297588670|ref|ZP_06947313.1| DNA-directed DNA polymerase III alpha subunit [Finegoldia magna ATCC 53516] gi|297574043|gb|EFH92764.1| DNA-directed DNA polymerase III alpha subunit [Finegoldia magna ATCC 53516] Length = 1161 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/1060 (35%), Positives = 596/1060 (56%), Gaps = 64/1060 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G + +LDK+ Q +IAITD ++F ++F ++ I+P Sbjct: 4 TFTHLHVHTEYSLLDGFSPIEKLLDKVEELQMKSIAITDHGSMFGTVKFYKECKKRNIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ +D+ K+ N + +VLL GY L+++VS Y+ + Sbjct: 64 IIGCEIYTTNKDH-KIKNPENKFYN---HLVLLAKNQTGYSNLMKIVSLGYV-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L++ +EG+I L+ G + + A+ K ++G+ Y+ LQ H Sbjct: 119 RVDKDTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177 Query: 190 RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 RE VV ++A ++ LV TN+ ++ +EDY+ H++L+ + + +++ Sbjct: 178 SS----REDMVVMENIPKIANELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEEN 233 Query: 245 RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + P + +L++ +M +F D PEA+ENT +IA C+ L+ LP F + Sbjct: 234 KMSYIPGEFFLRSEEQMRDLFKDYPEAIENTKKIAEMCNVELEFGNLHLPYFAIPDG--- 290 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + L+ GLE R A ++ ++R ++EL+VI +M + YFLIV DF Sbjct: 291 -FTNSSYLKKLVFDGLEKRFANDD-----RLEEAKERCEYELSVIEKMGYVDYFLIVWDF 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK +IPVGPGRGS AGS+ +Y L ITDI+PL ++L+FERFLNP+R+SMPD DIDFC Sbjct: 345 IRFAKSQDIPVGPGRGSAAGSIISYCLEITDINPLDYNLIFERFLNPERVSMPDIDIDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M + VD K +PN Sbjct: 405 YERREEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLL 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +++ FR+A + V +L+++++++EG+ RH STHAAG+VI P+ + V Sbjct: 465 NINID-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYV 523 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+ + D +TQFNM +E+ GL+K DFLGL+TLT++ + ++ ++ +D+S Sbjct: 524 PLA--INKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCMKYI-KKNKDIDVSFEDM 580 Query: 604 D--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 D D + + T TLGIFQ ES GMR L+ ++P +D+IA +L+RPGP++ I Y Sbjct: 581 DENDPKVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTY 640 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 + K+ +E + + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK Sbjct: 641 IHNKHNEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKK 700 Query: 722 KEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 + M+ ++ F I GA + G+ + +A I++L+ FA Y FNKSH+AAY Sbjct: 701 MKVMEDGRKEFIFGKEDEDGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAY 760 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 ++++ +TAW+K +YPVEFLAA ++ M N ++ + ++AR+ +I+I P +N F Sbjct: 761 SLVAMRTAWLKYYYPVEFLAALISSVMGNTSQLSLYIEEARRLDIKIEAPDINYSLDKFD 820 Query: 830 VGDNRIYYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESL 885 V DN I Y L AIK VGT + I+ + + F S DF R+ D +N+R +ESL Sbjct: 821 VKDNSIIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESL 880 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLE 941 + AGA G +R L+ +I Q KN N+F ++ D E Sbjct: 881 IKAGAFTSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNADDDRDDFTRRE 940 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGN 993 +F + S E+ VLG Y S HPL Y I+ K + Y E G Sbjct: 941 EF---DKSELLRMEKEVLGIYLSDHPLRAYSNIIGKYSNFSTGDLEDDAYNEK--NFDGK 995 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +++ +V S +K T+ + +V F + E FP Sbjct: 996 RVKVVGIVESINKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035 >gi|153853950|ref|ZP_01995283.1| hypothetical protein DORLON_01274 [Dorea longicatena DSM 13814] gi|149753332|gb|EDM63263.1| hypothetical protein DORLON_01274 [Dorea longicatena DSM 13814] Length = 1158 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1055 (36%), Positives = 587/1055 (55%), Gaps = 55/1055 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ ++AITD ++ ++F + A AAGI+P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKECVARVKELGMNSVAITDHGVMYGVIDFYRAARAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G +VLL GY L+++VSR + + Sbjct: 62 ILGCEVYVAPGSRFDKEAVGSGD-DRYYHLVLLAENDLGYHNLMKIVSRGFT-EGYYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L LQE EG+I L+ +G + + + + L ++ +FG ++ LQ Sbjct: 120 RVDLEVLQEF-HEGIIALSACLAGEVQKNILRGMYEEGKAAALRYQDIFGKGNFFLELQD 178 Query: 189 HRGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 H +E Q+V +++ + LVATN+ + ED + HD+L+ + ++ + Sbjct: 179 HG----MQEQQIVNQSLLRMSQETGIELVATNDVHYTYAEDVKPHDILLCIQTGKKLADE 234 Query: 244 DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR R +Y+K+ EM +F +ALENT +IA RC+ ++ LP++ D Sbjct: 235 DRMRYEGGQYYIKSEEEMKQLFPYALQALENTQKIADRCNVEIEFGVTKLPKY-----DV 289 Query: 303 IQKEEENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E NK GL+ R G ++RL++EL+VI M + YFLIV Sbjct: 290 PEGYTSWEYLNKLCFDGLKERYPDGD-------DSLKERLEYELSVIKSMGYVDYFLIVW 342 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +A+ I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD D+D Sbjct: 343 DFINYARTQGIKVGPGRGSAAGSIVSYCLGITSIDPIKYQLLFERFLNPERVSMPDIDVD 402 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR EVI YV KYG +RV QI+TFG++ A+ +RDVGR + +PY+ VD + K++P Sbjct: 403 FCFERRQEVIDYVGRKYGADRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDSIAKMVPT 462 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A+ + F++ D V L+++S++LEGL RH S HAAG+VIG R + + Sbjct: 463 ELNITLD-KALKMNPEFKKLYQEDEQVKELIDMSRRLEGLPRHTSMHAAGVVIGQRAIEE 521 Query: 542 LVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS 599 VP+ + SD V TQF M +E+ GL+K DFLGL+TLT++Q + + G +D++ Sbjct: 522 FVPL--SLGSDGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQDAERLASISSGKTIDIN 579 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I +DD + T T G+FQLES+GM+ ++ ++P +EDIIA +SLYRPGP+D I Sbjct: 580 KIDYDDKAVLASIGTGKTDGVFQLESAGMKNFMKELKPQNLEDIIAGISLYRPGPMDFIP 639 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y KN + I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM K Sbjct: 640 QYIKGKNNPDSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSK 699 Query: 720 KIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 K + M K+++ F + G NGI + A I++ + FA Y FNKSHAAAYAV Sbjct: 700 KKGDVMQKERQNFVYGNPDEGVPGCIANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAV 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQTAW+K +YPVEF+AA MT +DN K+ ++ RQ I+I+PP +N F V Sbjct: 760 VSYQTAWLKYYYPVEFMAALMTSVIDNPGKVSEYIYSCRQMGIKILPPDINKGEGSFSVD 819 Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I Y LAAIK +G I+ E F +L+DF R+ K++N+R +ES + +GA Sbjct: 820 GGNIRYGLAAIKSIGKPVIESIIQERKNGGEFSNLKDFIERLSGKEVNKRTIESFIKSGA 879 Query: 891 LDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 D G +R Q + Q LD + + ++ + + + + +K F I L Sbjct: 880 FDSLGGTRKQFMVVYVQILDQVNRERKYSMTGQLSLFDIVSDDQKSEFD--IPLPDVGEY 937 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIR--LA 998 + E+ VLG Y SGHPL+ Y+ +K + + +E+ T + + + Sbjct: 938 EKETKLAFEKEVLGVYLSGHPLEDYEEKWKKNISRTTLDFQIDDETGRTKVHDGAKEIVG 997 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ +K K T+ + ++T + E FP Sbjct: 998 GMITNKTIKYTKTNKVMAFITLEDLVGSVEVVIFP 1032 >gi|237802974|ref|YP_002888168.1| DNA polymerase III subunit alpha [Chlamydia trachomatis B/Jali20/OT] gi|231274208|emb|CAX11002.1| DNA polymerase III alpha subunit [Chlamydia trachomatis B/Jali20/OT] Length = 1237 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1059 (36%), Positives = 585/1059 (55%), Gaps = 68/1059 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+N + K Q PA+A+TD NLF A+EF + I+P Sbjct: 2 TWIPLHCHSQYSILDATCSINKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + + K+ ++LL EGY+ L L S Y +G V Sbjct: 62 IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117 Query: 130 -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q Sbjct: 118 PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175 Query: 189 HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226 H+ Y ++ E Q+ LA + L P VATN+ +L+ +D+ Sbjct: 176 HKSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235 Query: 227 AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276 AH++L+ V ++ + + K + + + Y K+ M +F+ PE + NT Sbjct: 236 AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCI 295 Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327 +A RC L P ++ + E E + A LE QG Sbjct: 296 VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355 Query: 328 --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 IAK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSG Sbjct: 356 GHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + Sbjct: 416 AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501 VAQIITFG+++AK A++DVGR L P ++V+ + K IP+ A S A+ D R+ Sbjct: 476 NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 + D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK Sbjct: 534 YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E G++K DFLGLKTLT + + + ++ G+ + + IP DD T+ LL T+GI Sbjct: 594 PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ+ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P Sbjct: 654 FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NG Sbjct: 714 ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E Sbjct: 774 IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859 K+ K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + Sbjct: 834 KVGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKN 893 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 P+ SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 894 GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953 Query: 920 TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976 F+ + KIT+ +V S + + E+ +LG Y + HP+D + +L Sbjct: 954 ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013 Query: 977 KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008 + + + G IR + + S +QKK Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052 >gi|256372403|ref|YP_003110227.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256008987|gb|ACU54554.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 1189 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1084 (37%), Positives = 600/1084 (55%), Gaps = 81/1084 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA +N++L AAD QPA+AITD NL+ ALEF + A G++P Sbjct: 3 SFVHLHTHTEYSMLDGASRINDLLRAAAADGQPALAITDHGNLYGALEFYKAATRTGVRP 62 Query: 70 IIGCQLDID-------------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 IIG + + + D + +G+ + + LL GY LI+L Sbjct: 63 IIGLEAYMAGGSRFERPQRRGRLDDTGGESERGEKLYY---HLTLLAENETGYHNLIQLS 119 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 SR +L + RI L+E EGLI LTG G + + + A T ++ Sbjct: 120 SRAFL-EGYYYKPRIDFELLEE-HREGLIALTGCLGGLVLQHLLRGDEEGARTVAGTLRE 177 Query: 177 LFG-DRLYVNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 + G D ++V LQ H ++ R + Q+++LA L VATN+S + ED+E HD L+ V Sbjct: 178 ILGPDNVFVELQDHGLAEQRRTNPQLLELAKHLGLRTVATNDSHYTHREDHETHDALLCV 237 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 ++ ++R R +HYLK+ EM F ++PEA + T++IA RCS L P LP Sbjct: 238 QTGATINDQNRFRFEGSEHYLKSAEEMRERFREVPEACDATLDIAERCSLELTFGQPALP 297 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARM 351 E D + +A L + QGA A+ + D +R+ +EL+VI M Sbjct: 298 -----EIDIPVRITGATYDERAGEYLAELVWQGARARYGNDLDETTSERIRYELSVIESM 352 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+V D I+ A++ +I VGPGRGS AGSV AY L IT IDPL + L+FERFLNP Sbjct: 353 GFPGYFLVVWDLIRHAREAHIRVGPGRGSAAGSVVAYCLGITQIDPLAYDLIFERFLNPG 412 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R MPD D+DF + R E+IRY +YGH+ VAQI+TF +++A+AA+RD R L PY+ Sbjct: 413 RKQMPDIDMDFDERYRGEMIRYAAERYGHDHVAQIVTFSTIKARAAVRDAARVLGYPYAV 472 Query: 472 VDRLCKLIPN---------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516 D++ K +P P H A + RE +DP V R++++++ Sbjct: 473 GDKIAKAMPPLVMGRDTPLAACLELTPGHE---DGYAQAAALREMVESDPDVARVVQVAK 529 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR-----SDLP-VTQFNMKWIEKAGLIK 570 LEGL R HAA +VI PL++ +P+ R S+ P VTQF M +E+ GL+K Sbjct: 530 GLEGLRRQDGIHAAAVVISRDPLTEYLPIQRKPDPGQDPSEAPIVTQFEMHGVEELGLLK 589 Query: 571 FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 DFLGL+TL+++ ++++ + A RGV +D+ I DD T+ +L +G+FQLE MR Sbjct: 590 MDFLGLRTLSVIDRAVELIRATRGVDLDIDAIALDDEATFAMLRAGDAIGVFQLEGGPMR 649 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 Q + + P ED+ ALV+LYRPGP+ + V Y +RKNG++ + +HP ++P+L++T G Sbjct: 650 QLMRQLAPSRFEDVAALVALYRPGPMAANMHVDYADRKNGRKPVSYLHPDLEPVLRDTYG 709 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 ++IYQE +M++AQ ++GYSL EAD LR+A GKKI+ + ++E+FI+G +G + Sbjct: 710 LMIYQESMMRVAQQIAGYSLEEADNLRKACGKKIRTLIAAEREKFIAGCVASGYGPELGT 769 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +F+++ FADY FNKSHA Y ++SYQTA++K ++PV+FLAA +T D+ +K+ + Sbjct: 770 ALFDIIEPFADYAFNKSHAFGYGLVSYQTAYLKANFPVQFLAAILTSVRDDKDKLAVYLA 829 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIM-EASADKPF 862 DA +I ++ P VN VDF V +I + LAA++ VG R I+ E + PF Sbjct: 830 DAAAHHIAVLVPDVNASDVDFSVTSGPEGEQIRFGLAAVRNVGEGLVRSIIDERTRSGPF 889 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 S DF RVD+ LNRR LESL+ AGA D FG+ R L ++L+ + + R Sbjct: 890 TSFADFLLRVDASVLNRRTLESLIKAGAFDSFGHPRRALYEALEGALERVNERRRQRDRG 949 Query: 923 HENIFAH--EKGTFSDKITLEKFSVENSSVR-FENEQRVLGFYFSGHPL----------D 969 ++F E + + L+ SVE S+ E+ +LG Y S HP+ D Sbjct: 950 LGSLFEEPSEDESVVPDLRLDIGSVEWSTPELLAFERDMLGLYVSAHPMHGVNVDRLGRD 1009 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 V PIL + T G + + + + Q+ TRKG + + + E Sbjct: 1010 V-TPILDLI-------EADTPPGEPVTVVGAITALAQRTTRKGDLMATLRLEDLQAGIEV 1061 Query: 1030 NFFP 1033 FP Sbjct: 1062 MVFP 1065 >gi|227873299|ref|ZP_03991564.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227840866|gb|EEJ51231.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 1156 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/1061 (35%), Positives = 598/1061 (56%), Gaps = 68/1061 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VHSSYSLL+G+ + ++ ++ +IA+TD ++ ++F ++A GI P Sbjct: 2 AFTHLHVHSSYSLLDGSGKIPEMIARVKELGMDSIALTDHGVMYGVIDFYKEAKKQGIHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G ++ + + +G + +VLL GY L++LVS + + Sbjct: 62 ILGSEIYLSRSMEERFIQKGGARYY---HLVLLAENDIGYHNLMKLVS-LGFTEGYYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ + L++ EG+I L+ +G + R + + A++ L ++ +FG ++ +Q Sbjct: 118 RVDYAVLEKY-HEGIIALSACLAGEVSRNLRLSQYEEAKQAALRYEGIFGKGNFFLEMQD 176 Query: 189 HRGYDRYRESQVVQ--LAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 H Y E ++V + HE +PLV TN+ + +ED +AHD+L+ + + + Sbjct: 177 HG----YAEQKLVNQGMLRLHEETGIPLVVTNDIHYTYKEDAKAHDILLCLQTGKKLMDE 232 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR R Y+K+ EM +F EALENT +IA+RC + LP++ E Sbjct: 233 DRMRYPGGQFYIKSEEEMEELFPYTKEALENTGKIAKRCQVNITFGEYHLPKYPVPEGHT 292 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L + GLE R G Q+ + RL +ELN I+ M F YFL+V D Sbjct: 293 AY----SYLEELCLKGLEKRY-------GESWQENKDRLYYELNTISDMGFVDYFLVVWD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I +AK + I VGPGRGS AGS+ AYA+ ITD+DP+ LLFERFLNP+R++MPD D+DF Sbjct: 342 YIHFAKTHGIAVGPGRGSAAGSIVAYAIGITDVDPMEHQLLFERFLNPERVTMPDIDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 +RR EVI YV KYG E+V+QIITFG+L A+ +RDVGR L +PY++ D+L KL+PN+ Sbjct: 402 EYERRQEVIDYVGKKYGKEQVSQIITFGTLAARGVIRDVGRVLDIPYAKCDQLAKLVPNE 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A++ + + +++++ +LEGL RH+S HAAG+VI P+S Sbjct: 462 LNMTLE-KALSVSKELKNLYDTEEETRQMIDMCLRLEGLPRHSSMHAAGVVIAGSPVSDY 520 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601 VP+ R + TQF M IE+ GL+K DFLGL+TLT++Q +L F+ + GVK+DL + Sbjct: 521 VPLSRGSDGSI-TTQFTMTTIEELGLLKMDFLGLRTLTVIQDALRFIEENHGVKLDLDKL 579 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P+DD + Y +L+ G+FQLES+GM ++ +QP C++DIIA V+LYRPGP+D I Y Sbjct: 580 PYDDAKVYAMLSKGDCAGVFQLESAGMVNFMKRLQPSCLDDIIAGVALYRPGPMDFIPDY 639 Query: 662 NNRKNGKEKIVSIH---PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 GK+ ++H ++ +LK T GVI+YQEQVMQI + L+G+++ +D+LRRAM Sbjct: 640 ---IAGKKNPATVHYDCKEMESILKNTYGVIVYQEQVMQIVRDLAGFTMGGSDLLRRAMS 696 Query: 719 KKIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 KK M++ ++ F+ G +K GIS+ +A I++ + FA Y FNKSHA +YA Sbjct: 697 KKKTSVMEEARQSFVYGNAKEGIAGCISKGISEEVANRIYDKMIDFAKYAFNKSHAVSYA 756 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTA++K +Y EF AA+M+ MDN K ++ + AR+ I+I+PP + V F V Sbjct: 757 LLSYQTAYLKYYYAPEFYAATMSSFMDNTVKTAEYIEVAREQGIEILPPDIQLAEVGFSV 816 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + +I Y L+A+KGVG + A I+ + PF + ED R+ + +NRR +ES + AGA Sbjct: 817 KEGKIRYGLSAVKGVGRSAAEQIILERKNGPFRNFEDLVQRLSQRGINRRAMESFIHAGA 876 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----------AHEKGTFSDKITL 940 D +R + L L + + Q +K++ ++ + F D L Sbjct: 877 FDNLEGNRREKLVMLPEVLEDLQKGKKDQIAGQMSLLDLLGEEAEERQEFELIFPD---L 933 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM--------GIKGYEESVATIRG 992 E+F + NE+ LG Y SGHPLD + +L+++ ++ EE + Sbjct: 934 EEFP---KAELLRNEKDALGVYLSGHPLDSDRALLKQLCSRRARDFSLEAIEEEKNLVDD 990 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+ ++ T+K + +VT + E FP Sbjct: 991 EHCTVGGMITGINRRITKKNDMMAFVTLEDNTGSMEVVVFP 1031 >gi|227500122|ref|ZP_03930193.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] gi|227217837|gb|EEI83134.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] Length = 1150 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/999 (37%), Positives = 584/999 (58%), Gaps = 73/999 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + +F HL VH+ YSLL+G ++ +LD+ +IAITD +++ A+EF ++A I Sbjct: 2 TGNFTHLHVHTEYSLLDGFSRIDLLLDRAKELGMESIAITDHGSMYGAIEFYKQAKKRDI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC++ + +D+ + + + ++LL + EGY+ LI++VS Y+ + Sbjct: 62 KPIIGCEVYVSEKDHKIKDSTNRRYY----HLILLAKSKEGYKNLIKIVSEAYV-NGFYY 116 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186 R+ ++++ + +I L+ +G +++ N + A+K L +++ FG ++ L Sbjct: 117 KPRVSFDFIKKHAGD-IIALSACLNGEVNQKILENDYEGAKKAALNYEEAFGKGNYFLEL 175 Query: 187 QRHRGYDRYRESQVV--QLAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Q H +E +V +L H+ +PLVATN+ ++++ED+ DVL+ + ++ Sbjct: 176 QNHG----IKEESLVNAKLNRIHQETAIPLVATNDVHYVNKEDFYYQDVLLCIQTGKLIK 231 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +DR R+ + + YLK+ EM IF+D +AL NT IA +C H P LP F Sbjct: 232 DEDRMRMPSSEFYLKSYEEMEEIFADYEDALTNTKLIADQCKLEFTFHEPHLPYF----- 286 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLI 359 K EE L N + L+ + QG I K G ++ R R D E+NVI+ M + YFLI Sbjct: 287 ---SKVEEG-LSN--LEYLKKLVDQGLIKKYGKIDKEIRSRADMEINVISSMGYVDYFLI 340 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DF+++A+ N+I VGPGRGS AGS+ +YAL IT IDP++++L+FERFLNP+R+SMPD D Sbjct: 341 VWDFVRYARDNDIAVGPGRGSAAGSIVSYALDITQIDPIKYNLIFERFLNPERVSMPDID 400 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDF RD V+ YV + YG + V+QIITFG +QA+ A+RDVGR L + Y++VD++ KLI Sbjct: 401 IDFDYVLRDRVVDYVNDVYGRDHVSQIITFGRMQARNAIRDVGRVLDISYAKVDKIAKLI 460 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+ + +A S+F+E +D RL++ ++KLEGL RH S HAAG+VI L Sbjct: 461 PSTLGMTID-KAFEASSKFKEIYESDLEGKRLIDTARKLEGLPRHTSIHAAGVVISKEAL 519 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDL 598 + ++P+ + +D VTQF+M IE+ GL+K DFLGL+ LT+++ ++ D RG+ VDL Sbjct: 520 TDIIPLA--LSNDQLVTQFDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGIDVDL 577 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I +D + T+GIFQ ES+GMR L+ ++P +D+IA SL+RPGP+D I Sbjct: 578 GKIDVNDKKVIEQFNKAKTIGIFQFESAGMRNFLKNLRPTVFDDLIAANSLFRPGPMDEI 637 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y + KN + + I P + P+L T G+I+YQEQVMQI Q L+GYSL EAD LRRAM Sbjct: 638 PKYIHNKNNPKDVSFITPALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMS 697 Query: 719 KKIKEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 KK M++ +E F I+G +NG+ + A I++ + FA Y FNKSH+ Sbjct: 698 KKKMAVMEENREIFIHGRLDEKGEVEIAGCVRNGVDELSANQIYDEMISFAKYAFNKSHS 757 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAY++++ QTA++K +YP E++A ++ MD K+ + + + I+++PP VN Sbjct: 758 AAYSLVAVQTAYLKHYYPEEYMANLISSVMDQSTKLYLYVNETKALGIEVLPPDVNKSLA 817 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCSRVDS---KKLNRRV 881 +F+V + RI + L+AIK +G I+ A DK F++ +DF RVD + LN++ Sbjct: 818 EFRVEEGRIIFGLSAIKNLGINMISAIVRAR-DKGGKFENFKDFLQRVDEVDQRALNKKG 876 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 +ESL+ AGA D GY+R L+ EK + EN + KG + Sbjct: 877 IESLIKAGAFDRMGYNRSSLM----------AIYEKAMASVSENRKVNLKGQLNLLDDFS 926 Query: 942 KFSVENSSVRFEN------------EQRVLGFYFSGHPL 968 S ++ V+ +N E+ VLGFY S HPL Sbjct: 927 SVSKKSDDVKIQNINEYPKKTKLKLEKEVLGFYISDHPL 965 >gi|325478762|gb|EGC81873.1| putative DNA polymerase III subunit alpha [Anaerococcus prevotii ACS-065-V-Col13] Length = 1150 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1077 (35%), Positives = 595/1077 (55%), Gaps = 98/1077 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G +N +LDK +IAITD ++ A+EF ++A A GI+PI Sbjct: 5 FTHLHVHTEYSLLDGFSRINVLLDKCKELGMNSIAITDHGEMYGAIEFYKQAVARGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + D+ + + ++LL +GY+ LI++VS Y+ + R Sbjct: 65 IGCEVYVSENDHTIKEPNNRRYY----HLILLAKNNDGYKNLIKIVSEAYV-NGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + ++++ L+ L+ +G + + + A++ + ++ FG ++ LQ H Sbjct: 120 VSFDYIKK-HANNLVALSACLNGEVSQRLIEGDYEAAKETAIKYESTFGKGNYFLELQNH 178 Query: 190 ---------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 RG D+ +PLVATN+ ++++ED DVL + +V Sbjct: 179 GIKEQNTVNRGLDKIHRDL--------NIPLVATNDIHYVNKEDAYYQDVLQCIQTGKLV 230 Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 +DR ++ + + YLK+ EM +FS A+ENT I+ C+ H P LP F Sbjct: 231 KDEDRMKMPSNEFYLKSYDEMNELFSSYEGAIENTQVISDMCNVSFTFHEPHLPYF---- 286 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFL 358 K EE + + + L + QG + K G +D R+R + E+N+I M + YFL Sbjct: 287 ----SKVEEGLTKLQYLKKL---VDQGLVQKYGVITEDIRKRSEMEINIIHNMGYVDYFL 339 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DF+++A+ ++I VGPGRGS AGS+ +YAL IT IDP+++ LLFERFLNP+R+SMPD Sbjct: 340 IVWDFVRYARDHDIAVGPGRGSAAGSIVSYALDITQIDPIKYDLLFERFLNPERVSMPDI 399 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF RD+V+ YV + YG + V+QI+TFG +QA+ A+RDVGR L + Y++VD++ KL Sbjct: 400 DIDFDYVLRDKVVDYVNDLYGRDHVSQIVTFGRMQARNAIRDVGRVLDISYAKVDKIAKL 459 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + +A +F+E +D RL++ ++K+EGL RH S HAAG+VI P Sbjct: 460 IPTTIGMTID-KAFDASPKFKEMYDSDVESKRLIDTARKVEGLPRHTSIHAAGVVISKDP 518 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVD 597 L+ ++P+ + +DL VTQF+M IE+ GL+K DFLGL+ LT+++ ++ D RG++VD Sbjct: 519 LTDIIPLA--LSNDLVVTQFDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVRKNRGIEVD 576 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 LS I +D T+GIFQ ES GMR L+ ++P +D+IA SL+RPGP+D Sbjct: 577 LSKIDVNDKNVIDQFNKARTIGIFQFESPGMRNFLKNLKPTVFDDLIAANSLFRPGPMDE 636 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y + KN + + I P + P+L T G+I+YQEQVMQI Q L+GYSL EAD LRRAM Sbjct: 637 IPNYIHNKNNPKDVKFIDPALRPILDVTYGIIVYQEQVMQIVQQLAGYSLGEADNLRRAM 696 Query: 718 GKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSH 765 KK M+ ++ FI G +NG+++ A I++ + FA Y FNKSH Sbjct: 697 SKKKMSVMEANRDIFIHGKVDSDGNIEIPGCIRNGVNEKAANQIYDEMISFAKYAFNKSH 756 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY++++ QTA++K +YP E++A ++ MD+ K+ + +++ I+++PP VN Sbjct: 757 SAAYSLVAVQTAYLKHYYPEEYMANLISSVMDSSSKLYLYVNESKSLGIEVLPPDVNKSL 816 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV---DSKKLNRRV 881 +F V + +I + L+ IK VG T + I+ + D F +DF R+ DS+ LN++ Sbjct: 817 AEFTVEEGKIIFGLSGIKNVGVNTIKSIVASRKKDGSFIDFDDFLQRIYEFDSRSLNKKA 876 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS------ 935 +ESL+ AGA D G++R L+ A + EK HEN + KG Sbjct: 877 VESLIKAGAFDSLGHNRASLM---------AHY-EKAMDAVHENRKVNVKGQIDMFGGFT 926 Query: 936 ------DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 K + N + + E+ VLGFY S HPL YK +L K E + +T Sbjct: 927 ENKEKKTKTKYDNIKEYNKKTKLKLEKEVLGFYISDHPLSEYKDVLDK------EVNFST 980 Query: 990 IRGNN-------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +N + +A ++ K + T+KG + + + + E FP Sbjct: 981 DYRDNMNDFQIQKLDRKFVTMAGVITEKSEIMTKKGQLMSFASLEDMYGTIEIVIFP 1037 >gi|258512318|ref|YP_003185752.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479044|gb|ACV59363.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 992 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/897 (40%), Positives = 540/897 (60%), Gaps = 46/897 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS++S E L + +I+ A + PA+AITDTN ++ AL F + A A GI PI Sbjct: 3 FVHLHVHSAFSFRESLLRVEDIVRAAKACEMPAVAITDTNAMYGALSFYRLARAEGISPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 +G Q+ + + + + TV V+L EGY+RL L + + K+ V Sbjct: 63 LGMQVSLAVGEEEAAPGRAAEWLDTV---VVLAMGMEGYRRLTRLATSA----RWKRPVP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF---NSSQVAEKRLLTFKKLFG-DRLYVN 185 + L L E ++GL++L GG P R F F ++ AE+RLL +L+V Sbjct: 116 HVTLRELAE-SSDGLVVLCGG---PESRLFDFLARGEAEAAERRLLQVAGAVPVGQLFVE 171 Query: 186 LQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H G R RE ++QLA +++PLVAT++ +L+ ED H +A + + Sbjct: 172 VQDH-GLRREREGLPSLIQLAKRYDVPLVATHDVRYLAREDASWHRAYAQLARADAAERF 230 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---C 300 T + + ++EM F++LPEAL T EIA C+ L +H +PR+ K+ Sbjct: 231 ----ATDEFHFATKAEMADRFANLPEALGRTAEIAEMCALDLPLHQVRMPRYATKDGRPA 286 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D++ +E + L + + + L+VI RM ++ YFL+V Sbjct: 287 DEVLREAARAGAARRYGALSPEVEERLERE--------------LDVICRMGYADYFLVV 332 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI+ A + I GPGRGS AGS+ AYAL ITD+DP+R LLFERFLNP R+S+PD D Sbjct: 333 ADFIRHAHQQGISTGPGRGSAAGSLVAYALRITDVDPIRHKLLFERFLNPARVSLPDIDT 392 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF +RR EVIRYV KYG +RVAQI TFG+LQA+AALRD GR + VDRL KL+P Sbjct: 393 DFEFERRGEVIRYVIEKYGRDRVAQIGTFGTLQARAALRDAGRMTGADPALVDRLAKLVP 452 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 H A + + FRE P RL E ++++E L H S HAAG++I P++ Sbjct: 453 G-VVHASLDGAYQESAAFRELVDGSPDARRLFEAAKRIEDLPHHTSIHAAGVIISPEPIA 511 Query: 541 QLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 +P+ D+ +D PVT + M+ +E G +K DFLGLKTLTL+ + LD + +R GV +D Sbjct: 512 DWIPL--DLAADDTPVTAYPMEDVEALGFVKMDFLGLKTLTLIDRCLDSIRKRTGVTIDW 569 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + D TY LLT T G+FQLES+GMR+ L ++P ++D+IA++SL RPGP++NI Sbjct: 570 RQVDEGDKATYALLTRADTNGVFQLESAGMRRVLRELRPTSLDDVIAVISLNRPGPMENI 629 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + + K+G+ + HP ++P+L +T GVI+YQEQ+MQIA ++G+SL+EAD+LRRA+ Sbjct: 630 PAFCDAKHGRRPVTYPHPDLEPILADTYGVIVYQEQIMQIASRMAGFSLAEADLLRRAVS 689 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK +E +D+++ RF+ G + G S+ A +++L+ +FADYGFN+SHAAAYAV++++TA+ Sbjct: 690 KKKREILDEERARFVDGCVRRGYSEETAREVYDLIVRFADYGFNRSHAAAYAVLAFRTAY 749 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837 ++ H+ +FLAA +TL M +KI+ + QDAR+ IQ+ PPSV + V D + Sbjct: 750 LRAHFLPDFLAALLTLSMGAPDKIRLYEQDARRHGIQVRPPSVLRSERGYTVEEDGSLRA 809 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 L +I+ VG HI+ ++KPF SL DF R++ + +NR+ L+SL AGALD F Sbjct: 810 GLISIRNVGEAAVDHILSLRSEKPFASLVDFLRRIEPRIVNRKALDSLFAAGALDEF 866 >gi|166154760|ref|YP_001654878.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 434/Bu] gi|166155635|ref|YP_001653890.1| DNA polymerase III subunit alpha [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336034|ref|ZP_07224278.1| DNA polymerase III subunit alpha [Chlamydia trachomatis L2tet1] gi|165930748|emb|CAP04245.1| DNA polymerase III alpha subunit [Chlamydia trachomatis 434/Bu] gi|165931623|emb|CAP07199.1| DNA polymerase III alpha subunit [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 1237 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/1059 (36%), Positives = 585/1059 (55%), Gaps = 68/1059 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+P Sbjct: 2 TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + + K+ ++LL EGY+ L L S Y +G V Sbjct: 62 IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117 Query: 130 -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q Sbjct: 118 PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175 Query: 189 HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226 H+ Y ++ E Q+ LA + L P VATN+ +L+ +D+ Sbjct: 176 HKSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235 Query: 227 AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276 AH+VL+ V ++ + + K + + + Y K+ EM +F+ PE + NT Sbjct: 236 AHEVLLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEMAELFAAHPETITNTCI 295 Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327 +A RC L P ++ + E E + A LE QG Sbjct: 296 VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355 Query: 328 --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 IAK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSG Sbjct: 356 GHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + Sbjct: 416 AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501 VAQIITFG+++AK A++DVGR L P ++V+ + K IP+ A S A+ D ++ Sbjct: 476 NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELKQL 533 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 + D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK Sbjct: 534 YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E G++K DFLGLKTLT + + + ++ G+ + + IP DD T+ LL T+GI Sbjct: 594 PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ+ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P Sbjct: 654 FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NG Sbjct: 714 ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E Sbjct: 774 IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859 K+ K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + Sbjct: 834 KVGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKN 893 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 P+ SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 894 GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953 Query: 920 TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976 F+ + KIT+ +V S + + E+ +LG Y + HP+D + +L Sbjct: 954 ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013 Query: 977 KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008 + + + G IR + + S +QKK Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052 >gi|57233855|ref|YP_182167.1| DNA polymerase III, alpha subunit [Dehalococcoides ethenogenes 195] gi|57224303|gb|AAW39360.1| DNA polymerase III, alpha subunit [Dehalococcoides ethenogenes 195] Length = 1170 Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust. Identities = 386/1024 (37%), Positives = 582/1024 (56%), Gaps = 51/1024 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ +SLL+G ++ ++ + A+AITD + F ++A AGI+PI Sbjct: 2 FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + + D T K + +VLL +GY LI+L SR ++ + R Sbjct: 62 LGSEFYLAYGDRTAKTAADKNYY----HLVLLAKNNKGYHNLIQLSSRSHI-EGFYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ +EGL+ L+ SG + R N A + L +KK F + Y+ +QRH Sbjct: 117 IDKELLEKY-SEGLVCLSACPSGEVPRLILENRFDEAREAALWYKKTF-ENYYIEIQRHP 174 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D + S ++ +A ++PLVATN++ +L +ED HD+L+ + + +VS + R ++ Sbjct: 175 MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234 Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--KE 306 D+ YLK+ EM + D+P+A+ENT +IA C+ L LP DI K Sbjct: 235 GDYFYLKSPEEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEI------DIPAGKT 288 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L + GL K Y +Q+ RL +EL+VI +F+ YFL+ D I Sbjct: 289 PDEYLADLCYEGL---------PKFYPDASQEILDRLKYELDVIKTTEFANYFLVTWDII 339 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++ K+ + G RGS A S+ Y L IT +DP+++ L+FERFLN +R MPD D+DF Sbjct: 340 RFVKEKGLYYGV-RGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQD 398 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVI YV KYG + V+QIITFG+L AKAA+RD GRAL M Y+ VDR+ K+IP Sbjct: 399 DRREEVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFS-L 457 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 H +A+ + + ++ D V L++ ++K+EGL RHASTHAAG+VI PL+ VP Sbjct: 458 HMTLDKAMEESTELKDMYNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHVP 517 Query: 545 MYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 + R + + L +TQ+ M+ I K GL+K DFLGL L +L K+ + + G +D Sbjct: 518 LQRLSKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLA 577 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +T+ LL T+G+FQLE +GMR+ ++ ++P DI A+V+LYRPGP++ I Sbjct: 578 IPLDDVKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPR 637 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K+G E I HP ++P+L+ET GVI+YQEQV+ IAQ SGY+L +AD+LR+AMGKK Sbjct: 638 FIKSKHGLEPITYPHPALEPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKK 697 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I M KQK FI GA KNG + IA +F L+ FA Y FNK+HA +YA+I+YQTA++K Sbjct: 698 IAAVMQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYLK 757 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835 +YPVE++ A + D EK+ +AR I+++PP +N V+F++ N +I Sbjct: 758 ANYPVEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDGVKKI 817 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + LAA+K VG I+ E A+ + S+ED C R + LN+RV+ESLV AGALD Sbjct: 818 RFGLAAVKNVGVAAVEPIVAERKANGEYLSVEDLCRRAEGSSLNKRVMESLVKAGALDSL 877 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE------NS 948 G R LL +L NI AQ +K + + +F F + + S+E + Sbjct: 878 G-DRGTLLFNLPNILSLAQREQKLKDSNQTTMF----DLFGQQSPMPMPSLEMAESPVTT 932 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + + E+ ++G + S HP Y +++ + + + +A MV S + Sbjct: 933 REKLQWEKELVGIFISEHPFTPYASAAQEVTTALCGQIDEELDNQPVTVAGMVASVRVSA 992 Query: 1009 TRKG 1012 TR+G Sbjct: 993 TREG 996 >gi|255348923|ref|ZP_05380930.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 70] gi|255503463|ref|ZP_05381853.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 70s] gi|255507141|ref|ZP_05382780.1| DNA polymerase III subunit alpha [Chlamydia trachomatis D(s)2923] gi|289525590|emb|CBJ15068.1| DNA polymerase III alpha subunit [Chlamydia trachomatis Sweden2] gi|296435150|gb|ADH17328.1| DNA polymerase III subunit alpha [Chlamydia trachomatis E/150] gi|296438870|gb|ADH21023.1| DNA polymerase III subunit alpha [Chlamydia trachomatis E/11023] Length = 1237 Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust. Identities = 387/1059 (36%), Positives = 585/1059 (55%), Gaps = 68/1059 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+P Sbjct: 2 TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + + K+ ++LL EGY+ L L S Y +G V Sbjct: 62 IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117 Query: 130 -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q Sbjct: 118 PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175 Query: 189 HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226 H+ Y ++ E Q+ LA + L P VATN+ +L+ +D+ Sbjct: 176 HKSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235 Query: 227 AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276 AH++L+ V ++ + + K + + + Y K+ E+ +F+ PE + NT Sbjct: 236 AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCI 295 Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327 +A RC L P ++ + E E + A LE QG Sbjct: 296 VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355 Query: 328 --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 IAK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSG Sbjct: 356 GHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + Sbjct: 416 AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501 VAQIITFG+++AK A++DVGR L P ++V+ + K IP+ A S A+ D R+ Sbjct: 476 NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 + D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK Sbjct: 534 YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E G++K DFLGLKTLT + + + ++ G+ + + IP DD T+ LL T+GI Sbjct: 594 PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ+ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P Sbjct: 654 FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NG Sbjct: 714 ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E Sbjct: 774 IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859 K+ K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + Sbjct: 834 KVGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKN 893 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 P+ SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 894 GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953 Query: 920 TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976 F+ + KIT+ +V S + + E+ +LG Y + HP+D + +L Sbjct: 954 ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013 Query: 977 KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008 + + + G IR + + S +QKK Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052 >gi|255311363|ref|ZP_05353933.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 6276] gi|255317664|ref|ZP_05358910.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 6276s] Length = 1237 Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust. Identities = 387/1059 (36%), Positives = 585/1059 (55%), Gaps = 68/1059 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+P Sbjct: 2 TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + + K+ ++LL EGY+ L L S Y +G V Sbjct: 62 IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117 Query: 130 -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q Sbjct: 118 PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175 Query: 189 HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226 H+ Y ++ E Q+ LA + L P VATN+ +L+ +D+ Sbjct: 176 HKSSEEKVALFEETWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235 Query: 227 AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276 AH++L+ V ++ + + K + + + Y K+ E+ +F+ PE + NT Sbjct: 236 AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCI 295 Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327 +A RC L P ++ + E E + A LE QG Sbjct: 296 VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355 Query: 328 --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 IAK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSG Sbjct: 356 RHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + Sbjct: 416 AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501 VAQIITFG+++AK A++DVGR L P ++V+ + K IP+ A S A+ D R+ Sbjct: 476 NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 + D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK Sbjct: 534 YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E G++K DFLGLKTLT + + + ++ G+ + + IP DD T+ LL T+GI Sbjct: 594 PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ+ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P Sbjct: 654 FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NG Sbjct: 714 ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E Sbjct: 774 IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859 K+ K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + Sbjct: 834 KVGKLIQEAHSMNILVLPPDINESGQDFEATQKGIRFSLGAVKGVGMSIVDSIVEEREKN 893 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 P+ SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 894 GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953 Query: 920 TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976 F+ + KIT+ +V S + + E+ +LG Y + HP+D + +L Sbjct: 954 ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013 Query: 977 KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008 + + + G IR + + S +QKK Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052 >gi|15605274|ref|NP_220060.1| DNA polymerase III subunit alpha [Chlamydia trachomatis D/UW-3/CX] gi|14194664|sp|O84549|DPO3A_CHLTR RecName: Full=DNA polymerase III subunit alpha gi|3328984|gb|AAC68147.1| DNA Pol III Alpha [Chlamydia trachomatis D/UW-3/CX] gi|297748675|gb|ADI51221.1| DNA polymerase III alpha subunit [Chlamydia trachomatis D-EC] gi|297749555|gb|ADI52233.1| DNA polymerase III alpha subunit [Chlamydia trachomatis D-LC] Length = 1237 Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust. Identities = 387/1059 (36%), Positives = 585/1059 (55%), Gaps = 68/1059 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+P Sbjct: 2 TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + + K+ ++LL EGY+ L L S Y +G V Sbjct: 62 IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117 Query: 130 -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q Sbjct: 118 PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175 Query: 189 HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226 H+ Y ++ E Q+ LA + L P VATN+ +L+ +D+ Sbjct: 176 HKSSEEKVALFEETWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235 Query: 227 AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276 AH++L+ V ++ + + K + + + Y K+ E+ +F+ PE + NT Sbjct: 236 AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCI 295 Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327 +A RC L P ++ + E E + A LE QG Sbjct: 296 VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355 Query: 328 --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 IAK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSG Sbjct: 356 GHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + Sbjct: 416 AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501 VAQIITFG+++AK A++DVGR L P ++V+ + K IP+ A S A+ D R+ Sbjct: 476 NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 + D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK Sbjct: 534 YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E G++K DFLGLKTLT + + + ++ G+ + + IP DD T+ LL T+GI Sbjct: 594 PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ+ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P Sbjct: 654 FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NG Sbjct: 714 ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E Sbjct: 774 IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859 K+ K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + Sbjct: 834 KVGKLIQEAHSMNILVLPPDINESGQDFEATQKGIRFSLGAVKGVGMSIVDSIVEEREKN 893 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 P+ SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 894 GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953 Query: 920 TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976 F+ + KIT+ +V S + + E+ +LG Y + HP+D + +L Sbjct: 954 ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013 Query: 977 KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008 + + + G IR + + S +QKK Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052 >gi|300871757|ref|YP_003786630.1| DNA polymerase III subunit alpha [Brachyspira pilosicoli 95/1000] gi|300689458|gb|ADK32129.1| DNA polymerase III, alpha subunit [Brachyspira pilosicoli 95/1000] Length = 1208 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 365/984 (37%), Positives = 565/984 (57%), Gaps = 46/984 (4%) Query: 16 VHSSYSLLEGALSLNNILDKIAADQQ--------------PAIAITDTNNLFSALEFSQK 61 +H+ YS+L+GA + ++ K+ ++ PAIA+TD N+F A+EF + Sbjct: 1 MHTQYSILDGAARIKSLYSKVDKTKRLIPGLIDRAKELDMPAIAMTDHGNMFGAMEFFSE 60 Query: 62 ACAAGIQPIIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 A GI PIIGC++ + + K+ N + + +VLL EGY L +LV+ Sbjct: 61 AKDKGIIPIIGCEVYVAPKTRFDKKLDNSEEK---SAMHLVLLAKDKEGYNNLCKLVTFG 117 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Y +G L E +GLI L+ G I A + A K +K +FG Sbjct: 118 YT--EGFYYRPRVDHELIEKYNKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYKSIFG 175 Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y+ LQ H D+ S + +LA H + LV TN+ ++S+ED +AH++L+A+ Sbjct: 176 EDFYIELQDHGLAEDKTLNSALYKLANHHNIELVVTNDVHYVSKEDAKAHEILLAIQTKA 235 Query: 239 VVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAPILPRFI 296 + R + + + LK EM F+ LP+A ENTV+IA +C + + +P + Sbjct: 236 TLDSPRRYKFPSNEFHLKTEEEMKKSFAKLPKAFENTVKIAEQCKDLNIMTKTYYMPNY- 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKF 353 E + + E LR + GL K Y+ ++ +RLD EL VIA+M F Sbjct: 295 --ELPN-GETETTALRKMCIEGLN---------KHYNNDIPKEAMERLDMELGVIAKMGF 342 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL+V DFI +A+ +++ VGPGRGS AGS+ A+A IT ++PL ++LLFERFLNP+R Sbjct: 343 EGYFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFASGITKVNPLDYNLLFERFLNPERK 402 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D+DF D+R+ VI YV NKYG + V+QI TFG+L ++ +RDV R + + + D Sbjct: 403 SMPDIDVDFQDDKREVVIDYVTNKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLATAD 462 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 RL K IP+D V + D + FR+ + + EIS +L+GL R+ HAAG++ Sbjct: 463 RLAKSIPDDIKRVVDIYDHPDCAEFRKEIDNSRELKNMYEISMRLDGLVRNVGLHAAGVI 522 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592 I P++ L P+Y+D ++ Q+ M ++E AGLIK DFLG+K L L++ ++ + +R Sbjct: 523 ISSHPIADLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIKERY 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 G ++D+ IP DD Y + T G+FQ ES GMRQ L +QP +D+++ V+L+RP Sbjct: 583 GKEIDIDKIPLDDEAVYKIFRHADTGGVFQFESPGMRQMLLNIQPTAFDDLVSSVALFRP 642 Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+ + + Y +RKN +++IV HP ++P+LKE+QGV+IYQEQ+M I++ + G++ +EA Sbjct: 643 GPLKSGMDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRAIGGFTAAEA 702 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D LR+AMGKKI E+M+ +E+FISG + G + + +F+ + FA+YGFNKSH+ YA Sbjct: 703 DDLRKAMGKKIVEKMNSMREKFISGGLERGYDEELLNYLFDTMKGFAEYGFNKSHSVCYA 762 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +I+YQ A++K HYP+E+ A + + + +KI + + +Q NI+++ SV F Sbjct: 763 LIAYQEAYIKAHYPMEYYVALLNTVIADTDKIALYLNEIKQKNIEVVTASVFESDALFSQ 822 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + +I Y+L A+KGVG A I E + F +LEDF RVD +NR+V E+L+ G Sbjct: 823 KNGKIVYALHAVKGVGLQAALAIQEERENNGQFKNLEDFVKRVDVHLVNRKVYETLIKCG 882 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVEN 947 A FG++ L+ SLD I +A +K + +F E T S + +EK Sbjct: 883 AFSDFGHTESALISSLDAILAHASNYQKETLSGQTMLFDSMSEDDTGSASLVIEKQVEYA 942 Query: 948 SSVRFENEQRVLGFYFSGHPLDVY 971 +++ ENE+ VLGF HP Y Sbjct: 943 NNILMENEKEVLGFSLRYHPFARY 966 >gi|76789282|ref|YP_328368.1| DNA polymerase III subunit alpha [Chlamydia trachomatis A/HAR-13] gi|76167812|gb|AAX50820.1| DNA polymerase III alpha subunit [Chlamydia trachomatis A/HAR-13] Length = 1237 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 387/1059 (36%), Positives = 584/1059 (55%), Gaps = 68/1059 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+P Sbjct: 2 TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + + K+ ++LL EGY+ L L S Y +G V Sbjct: 62 IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117 Query: 130 -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q Sbjct: 118 PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175 Query: 189 HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226 H+ Y ++ E Q+ LA + L P VATN+ +L+ +D+ Sbjct: 176 HKSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235 Query: 227 AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276 AH++L+ V ++ + + K + + + Y K+ M +F+ PE + NT Sbjct: 236 AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCI 295 Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327 +A RC L P ++ + E E + A LE QG Sbjct: 296 VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355 Query: 328 --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 IAK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSG Sbjct: 356 GHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + Sbjct: 416 AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501 VAQIITFG+++AK A++DVGR L P ++V+ + K IP+ A S A+ D R+ Sbjct: 476 NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 + D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK Sbjct: 534 YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E G++K DFLGLKTLT + + + ++ G+ + + IP DD T+ LL T+GI Sbjct: 594 PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ+ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P Sbjct: 654 FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NG Sbjct: 714 ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E Sbjct: 774 IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859 K+ K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + Sbjct: 834 KVGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKN 893 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 P+ SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 894 GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953 Query: 920 TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976 F+ + KIT+ +V S + + E+ +LG Y + HP+D + +L Sbjct: 954 ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013 Query: 977 KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008 + + + G IR + + S +QKK Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052 >gi|325281577|ref|YP_004254119.1| DNA polymerase III, alpha subunit [Odoribacter splanchnicus DSM 20712] gi|324313386|gb|ADY33939.1| DNA polymerase III, alpha subunit [Odoribacter splanchnicus DSM 20712] Length = 1254 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 368/1097 (33%), Positives = 594/1097 (54%), Gaps = 80/1097 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F H VHS YS+L+GA S+ +++K AD Q A+A+TD N+F F GI+PI Sbjct: 3 FTHFHVHSQYSILDGAASIPGLIEKAKADGQTALALTDHGNMFGIKLFYDTCRQKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+ + + + N+ K + +++L GY L++L S + D R Sbjct: 63 LGCEAYVA---RVSLYNKEKPIDRSGEHLIILAKNLTGYLNLVKLCSTAFC-DGFYYRPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I + L++ EGLI+ + G ID+ + AEK L +K LFG+ Y+ + RH Sbjct: 119 IDKTQLEK-HHEGLIISSACLGGEIDQKIMAGDLEGAEKAALWYKNLFGEDYYLEVMRHP 177 Query: 191 GYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 D + +++ +++A + L+ATN+ FL+EED EAHD+L+ + Sbjct: 178 AADPKQRAEIYDNQQRCIQEKIKIARKLNIKLIATNDVHFLNEEDAEAHDLLICLNTRKD 237 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--- 296 + R R T + K EM+ +F DLPEA+ENT EI + P++P F Sbjct: 238 IDDPTRMRYTRQEWFKTTQEMIDLFPDLPEAIENTQEITDKVEEYELDSDPLMPVFPIPP 297 Query: 297 -----------------------EKECDDIQKEEENELRNKAVAG--------LEV---- 321 +++ + + EEE + K + G LE Sbjct: 298 ELGTEEEYRQKFSQEDLFNEFTRDEKGNVVLTEEEANKKIKKLGGYDRLYRIKLEADYLK 357 Query: 322 RLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378 L + K Y + + +R+ FEL+++ M F GYFLIV DFI+ A+ + VGPGR Sbjct: 358 ELTMKGVVKRYGENPSPEIMERIIFELHIMKTMGFPGYFLIVQDFIRAARDMGVIVGPGR 417 Query: 379 GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438 GS AGS AY L IT+IDP+++ LLFERFLNPDR+S+PD D+DF R +V+ +V KY Sbjct: 418 GSAAGSAVAYCLGITNIDPIKYDLLFERFLNPDRISLPDIDVDFDDAGRQQVLEWVTEKY 477 Query: 439 GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498 G ++V+ I+TFGS+ AK A++DV R L++ S+ +RL K++P P + + Sbjct: 478 GADKVSHIVTFGSMAAKMAIKDVARVLKLELSEANRLAKMVPEAPKMTLKKAYKENPDLE 537 Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558 +E + +P + + ++ ++ LEG R HA GI+I PL+ +P+ L TQ+ Sbjct: 538 KEKQSLNPLISKTIQFAETLEGSIRQTGVHACGILISRDPLTDHIPIMPTEGESLMTTQY 597 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617 + ++E GLIK DFLGL+TL++++ LD + + + + ++ + IP DD ET+ L T T Sbjct: 598 DGHFVEPIGLIKMDFLGLRTLSIIKTCLDNIKKSKHIVLNENEIPLDDEETFKLFTRGDT 657 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 G+FQ ES GM++ L +QP+ ED++A+ +LYRPGP++ I + RK+G+E I HP+ Sbjct: 658 TGLFQFESPGMKKHLRALQPNRFEDLVAMNALYRPGPMEYIPSFIRRKHGEEPIEYDHPM 717 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++P LK+T G+ +YQEQVM ++ L ++ ++D LR+AMGKK E + + K +F+ G Sbjct: 718 MEPYLKDTYGITVYQEQVMLQSRALGLFTRGQSDTLRKAMGKKKFELLAELKGKFVEGCK 777 Query: 738 KNGI----SKTIAVNIFELLAK-------FADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 N +K ++ EL+ K FA Y FNKSH+ YA I+YQT ++K HYP E Sbjct: 778 NNPDFVQGAKEKGKDVEELVNKIWGDWEAFASYAFNKSHSVCYAYIAYQTGFLKAHYPAE 837 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGV 845 F+AA+++ + ++ K+ F + ++ + ++ P VN DF V + +I + +AAIKGV Sbjct: 838 FMAANLSNNLSDITKVTVFMDECKRMGLSVLAPDVNESYNDFTVNSHGQIRFGMAAIKGV 897 Query: 846 GTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ- 903 G I+E + P+ + DF R+D K +N++ +E+LV AG LD FGY R Q L Sbjct: 898 GEAAVEKIIEEREKNGPYKDVYDFFERIDYKSVNKKTIENLVTAGGLDSFGYHRAQYLHL 957 Query: 904 ------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 LDN+ Y Q +++ N +F G K + + + + E+ Sbjct: 958 VDATTTVLDNLVNYGQKNQQDSMNLQATLFGELDGFEVTKPNIPDCEPWHDYEKSKKEKE 1017 Query: 958 VLGFYFSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 ++G Y + HPLD YK ++ + ++ + T +G I +A ++ +K++ KT+ G Sbjct: 1018 LIGIYLTSHPLDPYKLEMQLLCTPVEELNSGLETFKGKEINIAGIITAKREGKTKTGKDF 1077 Query: 1016 GWVTFSEPAKEYEANFF 1032 G +T + + YE FF Sbjct: 1078 GILTLEDFSGTYELAFF 1094 >gi|317129921|ref|YP_004096203.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315474869|gb|ADU31472.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM 2522] Length = 1128 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 369/1036 (35%), Positives = 599/1036 (57%), Gaps = 48/1036 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL L ++ + A+AITD + ++ + F + I+P Sbjct: 2 SFVHLHVHSEYSLLRSTGKLEELVKQAKHLGYEALAITDIDAMYGVIPFYKACLKNNIKP 61 Query: 70 IIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG +L + QD +K + ++ L EGYQ LI L +R Q K S Sbjct: 62 IIGVELAYVKNQDEVKKDHH---------RLLFLAENNEGYQSLIRLTTRA----QEKSS 108 Query: 129 VRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 +E+ + G+I ++ + G + + + A + + +FG + +++ Sbjct: 109 SFGPYVTYEELQANSNGVIAISPFAEGLVQQYIYDKQDASALQHFEWLQSIFGKENVFLE 168 Query: 186 LQRH-RGYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 LQ H R +R + + E + ++A+N+ F +E ++AH + ++ + + Sbjct: 169 LQNHWRQEEREKLLAISNWLKGKEDAIRVIASNHIHFTHKEQHDAHRAIQSIRLGIKLDE 228 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + ++YLK+ EM +F EA NT+ +A +C+ +++ ILP F Sbjct: 229 LPHDYSSSEYYLKSIDEMHHLFKKDGEASRNTLRVADKCNVKIELGNMILPHF------- 281 Query: 303 IQKEEENELRNKAVAGLEVR-LAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLI 359 L N+ A +R L I + Y +++ +RLD+EL VI+ MK+ YFLI Sbjct: 282 -------PLPNETTATEYLRELCYKGIQERYENPSEETWKRLDYELEVISEMKYEDYFLI 334 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADF+++A + I GPGRGS AGS+ AY L IT++DP+++ L+FERFLN +R+SMPD D Sbjct: 335 VADFMRYAHEKKILTGPGRGSSAGSIVAYVLKITNVDPMKYGLIFERFLNRERISMPDID 394 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDF +RRDEVIRYV+ KYG VAQIITFG+L AKAA+RDVGR L + +D++ K I Sbjct: 395 IDFPDNRRDEVIRYVKEKYGRTHVAQIITFGTLAAKAAIRDVGRVLGIELPIIDKISKSI 454 Query: 480 PNDPAHPVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P+ P ++L+ +S + + ++ V L I++++EGL RH+S HAAGIV+ P Sbjct: 455 PSRPN--ITLENALKESTVLQGMIESEEKVAELFTIAKEVEGLPRHSSIHAAGIVMSKEP 512 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597 L+ +VP+ + ++ +TQF M IE GL+K DFLGL+ L+ +++ L + Q+ + ++ Sbjct: 513 LTNVVPL-QIGNDEMYLTQFPMGDIEDIGLLKMDFLGLRNLSFIEQILKLIHNQQHIDIE 571 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L+ IPF D T+ LL T G+FQLES+GMR L+ ++P EDI+A+ +LYRPGP++N Sbjct: 572 LNNIPFHDVNTFTLLGKGQTSGVFQLESTGMRSVLKRLKPTEFEDIVAVNALYRPGPMEN 631 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I VY R + +EK+ HP ++ +L T GV+IYQEQ+MQIA ++G+SL EAD+LRRA+ Sbjct: 632 IPVYIRRLHKEEKVTYPHPSLEEILSPTYGVLIYQEQIMQIASKMAGFSLGEADILRRAV 691 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK ++ +++Q+++F+ G+ G + A ++ L+ +FADYGF +SHA AY++I+Y A Sbjct: 692 GKKKRDVLEEQRQKFVQGSISKGYDEKEANEMYNLILRFADYGFPRSHAVAYSIIAYYLA 751 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +Y +EF+ A M + + +K+ ++ +AR+ +++ PPS+ F + + I+ Sbjct: 752 YLKANYQLEFMTALMGSVIHHHDKLGEYITEARRSGMKVHPPSIQQSEAQFSIKNKDIWI 811 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIK VG + I+E A FDSL D C+R+ ++ L +R L++L+ AGALDC Sbjct: 812 GLHAIKNVGVQAVQAILEERAKSDFDSLFDLCARIPTRLLPKRALDALIVAGALDCIHDD 871 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R QLL S+D+ +Y + + + N +F E + +++ S S R E++ Sbjct: 872 RAQLLASVDDAIEYGEKLREQEKNAQTELFIEEVKQ-PEYMSVPPLS---SKDRLNFEKQ 927 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 VLGFY SGHP++ ++ G + A + + +R+A M+ + KT+KG ++ + Sbjct: 928 VLGFYASGHPIESELALVESFGRLSVID--AKEKKSTLRIAGMIEDVKVIKTKKGDQMAF 985 Query: 1018 VTFSEPAKEYEANFFP 1033 S+ E + FFP Sbjct: 986 AQLSDETGEIDLTFFP 1001 >gi|326201799|ref|ZP_08191670.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] gi|325988399|gb|EGD49224.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] Length = 1158 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 373/989 (37%), Positives = 580/989 (58%), Gaps = 42/989 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL VH+ YSLL+GA + +++ ++ +IAITD ++ ++F ++A GI+P Sbjct: 3 NFVHLHVHTEYSLLDGANRIKDLIQRVKELGMDSIAITDHGVMYGVVDFYKEAVKNGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + N+K G +VLL GY+ L+++VS + + Sbjct: 63 ILGCEV-YTAKRNMKDKQPGIDS--NYGHLVLLAKNQIGYKNLMKIVS-LGFTEGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L++ +EG+I L+ SG I A N + A + ++FG Y+ LQ Sbjct: 119 RVDYETLEKY-SEGIIALSACLSGDIPSAILNNDYERAVELSNNLNRIFGQGNFYLELQ- 176 Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G Q+++L+ +PLVATN++ +L++E+ ++H++L+ + ++ +R Sbjct: 177 HNGISEQNLVNQQLIKLSGELGIPLVATNDAHYLTKENAKSHEILLCIQTGKTINDDNRM 236 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D Y+K+ EM F ++ +ALENTV+IA C+ L+ LP F E ++ Sbjct: 237 RFNTDEVYVKSPEEMYDNFKNVKQALENTVKIAEMCNVELEFGKLHLPSF---EVEEGYT 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E LR + GL+ R +++ RL++EL+VI++M + YFLIV DFI+ Sbjct: 294 PYE-YLREQCYKGLKSRYGDNC------SEEIIHRLEYELSVISQMGYVDYFLIVWDFIK 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++ I VGPGRGS AGS+ +YAL IT IDPL+++LLFERFLNP+R+SMPD DIDFC + Sbjct: 347 YAREQGIMVGPGRGSAAGSIVSYALGITSIDPLKYNLLFERFLNPERISMPDIDIDFCYE 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG +RV+QIITFG++ A+A +RDVGRAL + Y VD + K+IP Sbjct: 407 RRQEVIDYVIRKYGKDRVSQIITFGTMAARAVIRDVGRALDISYGDVDAIAKMIPFQIGM 466 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + ++ D L++ ++ LEGL RHASTHAAG+VI P+ + VP+ Sbjct: 467 NID-KALEMNQELKKRYETDEETQVLIDTARTLEGLPRHASTHAAGVVISKEPIVEYVPL 525 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 + + TQ +E+ GL+K DFLGL+TLT+++ ++D Q G K+D+ I FD Sbjct: 526 --QLNDNSVTTQVTAVPLEELGLLKMDFLGLRTLTVIRDAVDLAEQVHGKKIDIQQIDFD 583 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + Y ++ T G+FQLES+GM Q ++ +QP+ +EDIIA +SLYRPGP+D I Y Sbjct: 584 DKDVYKMIGDGRTAGVFQLESAGMTQFMKDLQPNSLEDIIAGISLYRPGPMDQIPRYIRN 643 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN + I HP+++ +L T G ++YQEQVMQI + L GYSL +D++RRAM KK Sbjct: 644 KNNPKLIKYHHPMLESILDVTYGCMVYQEQVMQIVRELGGYSLGRSDLVRRAMSKKKISV 703 Query: 725 MDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 M+++++ F + GA NG+ + A IF+ + FA Y FNKSHAAAYAV+ Sbjct: 704 MEQERKNFVYGITDEEGNEVVKGAVNNGVDEITANKIFDEMMDFASYAFNKSHAAAYAVV 763 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTAW+K +YPVEF+AAS+ + + +K+ ++ + + NIQ++PP +N V F V + Sbjct: 764 AYQTAWLKHYYPVEFMAASINSFLGSSDKVSQYVNECKSLNIQVLPPDINESNVKFTVVN 823 Query: 833 NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I + LAAIK VG + ++ E + F S DFC R++ + +N+R +ESL+ +GA Sbjct: 824 KNIRFGLAAIKNVGENAIKSVIAERQQNGEFSSFLDFCQRIEGRDINKRCVESLIKSGAF 883 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKITLEKFSVENS 948 D R +L+ + + K + +IF + + + K N+ Sbjct: 884 DSLKVFRSKLMAVYERLLDGISQNRKKNMDGQLSIFDMMSEPQELLQEDFPDIKEYPANA 943 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + E E +LG Y SGHPL Y+ IL + Sbjct: 944 LLSMEKE--MLGLYVSGHPLSEYQSILER 970 >gi|15615731|ref|NP_244035.1| DNA polymerase III alpha subunit [Bacillus halodurans C-125] gi|14194680|sp|Q9K838|DPO3A_BACHD RecName: Full=DNA polymerase III subunit alpha gi|10175791|dbj|BAB06888.1| DNA polymerase III alpha subunit [Bacillus halodurans C-125] Length = 1116 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 367/1029 (35%), Positives = 597/1029 (58%), Gaps = 52/1029 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VH+ VHS Y+LL + +++K A Q A+A+TD + ++ A+ F + +G++PII Sbjct: 4 VHIHVHSEYTLLSSMCRIPALVEKAKAAQFSALALTDRHVMYGAVPFYKACKESGLKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G + + ++ + ++L + +GY+ L++L + + Q ++ Sbjct: 64 GMETTVRFAEDRE------------SDLLLYARSNKGYEHLLKLST----IIQCREEKEK 107 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK--LFGDRLYVNLQRH 189 ++W + + + ++ SG RA + + +R + F K L G+ +Y+ +Q Sbjct: 108 YVTWEELLAYKDDLLYVIPYSGGFVRACLEDEALERGERFIQFLKDHLGGESVYLEIQ-- 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G DR + + QLA +PLV + + L ED +A V+ A+ +V + R Sbjct: 166 -GTDRSKVEPINQLAAKLAIPLVCSQHIQVLEREDLDAWKVIQAIREGVLVEEL-RIEQE 223 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 D +EM F PEAL+NT ++A RC L + P LP+F ++ E+ Sbjct: 224 EDVCFFTLTEMEQTFRAYPEALQNTKKLADRCHVELTLGKPRLPKFQTPN----EQSAED 279 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR G + R + ++ QRL EL VI RM FS YFLIV DF+++A++ Sbjct: 280 YLRKLCEQGAKERYGEE------WTKEKAQRLGEELAVIERMGFSDYFLIVWDFMRFARE 333 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +I GPGRGS AGS+ AY L ITD+DPL + LLFERFLNP+R+S+PD D+DF RR+E Sbjct: 334 ASIVTGPGRGSVAGSLVAYVLFITDVDPLHYDLLFERFLNPERISLPDIDLDFPDHRREE 393 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI YV+ KYG RVAQI+TFG+L A+A++RDVG+AL +P + ++++ K I P + + Sbjct: 394 VIVYVKKKYGANRVAQILTFGTLAARASVRDVGKALAIPPNVIEKISKEISGRPGMTL-V 452 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 +A ++ R R+ A +++++++K+EGL RH STHAAG+VI ++PL++++ + Sbjct: 453 KAYNENERLRQLVHASDEAQKVMKLARKVEGLPRHTSTHAAGVVISEQPLTEVIALQHG- 511 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608 + ++P+TQ M+ +E GLIK DFLGL+ LTLL+ + + + G +++ +P +D +T Sbjct: 512 QGEVPLTQGTMETVEDVGLIKMDFLGLRNLTLLEMVVKRVRETYGHSLNVKQLPLNDAKT 571 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + LL T G+FQLES GMR+ L ++P+ DI+A+ +LYRPGP++ I Y K G Sbjct: 572 FALLAKGETTGVFQLESGGMRKVLRELKPNTFADIVAVNALYRPGPMEFIPDYIQGKEGT 631 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 ++I +HP ++P+L T GVI+YQEQ+MQIA ++G+SL EAD+LRRA+ KK E + +Q Sbjct: 632 KEITYLHPDLEPILSSTYGVIVYQEQIMQIAAKMAGFSLGEADLLRRAISKKKGEALRQQ 691 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 +E F++GA + G + A I+EL+ +FA+YGFNKSHA AY++++YQ A++K HYP F Sbjct: 692 EEAFVTGAVRQGYEQETAKKIYELIVRFANYGFNKSHAVAYSMLAYQLAYLKAHYPSSFY 751 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 AA + + EK+++ Q+ +Q I+++PPS++ + F + + + L ++ V Sbjct: 752 AALASTIWNQPEKLERLLQEMKQQGIRVLPPSLSKSDIHFSEEEEGVRFPLLPLRYVSVR 811 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 R +++A + P SL D CSRVD + + RV+ESL+ AGALD G R LL +++ Sbjct: 812 AIRELIKARREAPVRSLFDLCSRVDGRIVTSRVMESLIKAGALDELG-ERATLLANIEEA 870 Query: 909 QKYAQWVEKNRTNK----HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 ++A+ V++ + N ++ E LEK + E +V GFY S Sbjct: 871 FQFAEQVKEFQENTGGLFQLSVEEPEYIKVEPLTDLEKLAYEKEAV---------GFYLS 921 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 GHPL Y LR+ Y E ++LA M+ ++ +T++G +G++T S+ Sbjct: 922 GHPLLAYTESLRQYDRLTYLEGTER---RFVKLAGMIHRIRRIRTKRGEVMGFLTMSDET 978 Query: 1025 KEYEANFFP 1033 E+EA FP Sbjct: 979 GEWEAVVFP 987 >gi|225028022|ref|ZP_03717214.1| hypothetical protein EUBHAL_02291 [Eubacterium hallii DSM 3353] gi|224954622|gb|EEG35831.1| hypothetical protein EUBHAL_02291 [Eubacterium hallii DSM 3353] Length = 1160 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 378/1055 (35%), Positives = 598/1055 (56%), Gaps = 55/1055 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + +L + ++AITD ++ ++F +KA GI+P Sbjct: 2 AFTHLHVHTEYSLLDGSSKIKELLPRAKELGMDSLAITDHGVMYGVIDFYKKAKEVGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + QG+ +VLL +GY+ L+++V+R + + Sbjct: 62 ILGCEIYVAPGSRFD-REQGRGE-DRYYHLVLLAENNQGYKNLMKIVTRGFT-EGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---FNSSQVAEKRLLTFKKLFGDR-LYVN 185 R+ L++ EG+I L+ +G I F+ ++ A ++ + +FG+ ++ Sbjct: 119 RVDYEVLEKY-HEGIIALSACLAGEIPNKILKEDFDGARAAANKM---RDIFGENNFFLE 174 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H + + + +++L+ +P+V TN+ ++ EED HD+L+ + VS +D Sbjct: 175 LQDHGIRQQTQVNTSLIRLSRELGIPMVVTNDVHYIREEDAVPHDLLLCIQTGKKVSDQD 234 Query: 245 RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R +YLK+ EM +F EA++NT +IA RC+ + +P+F E D Sbjct: 235 RMRYEGGQYYLKSEEEMQKVFPYAREAMDNTHKIAERCNVEIVFGEQKVPKFDVPEGYD- 293 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIV 360 A + L+ L + + K Y Q+ ++RL +EL+ I M + YFLIV Sbjct: 294 -----------AFSYLK-ELCETGLVKRYGDPPPQELQERLSYELSTIKNMGYVDYFLIV 341 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++AK I VGPGRGS AGS+ +Y L IT+IDP+R+ L+FERFLNP+R+SMPD DI Sbjct: 342 WDFIRFAKSQGIAVGPGRGSAAGSIVSYCLEITNIDPIRYQLIFERFLNPERVSMPDIDI 401 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC +RR EVI YV KYG ++V QI+TFG++ A+ A+RDVGR L +PY QVD + K+IP Sbjct: 402 DFCYERRQEVIDYVYEKYGKDKVVQIVTFGTMAARMAVRDVGRVLDIPYVQVDNVAKMIP 461 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A+ + ++A +D V L+++S +LEGL RH S HAAG+VIG +PL Sbjct: 462 MELGITIE-KALKSNPELKQAYESDDVVKNLIDMSMRLEGLPRHTSIHAAGVVIGSKPLD 520 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 + VP+ R ++ TQF M IE+ GL+K DFLGL+TLT++Q + + ++ G + Sbjct: 521 EFVPLSRGA-DNVITTQFTMTTIEELGLLKMDFLGLRTLTVIQDAARMIGKKLGHDFSID 579 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I +DD + Y ++ T G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Sbjct: 580 TIDYDDAKVYEMIGQGKTEGVFQLESAGMKSFMKELKPTNLEDVIAGISLYRPGPMDFIP 639 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y K ++ I P ++ +L T G I+YQEQVMQI L+GY+L +D++RRAM K Sbjct: 640 KYIKGKQNQDSIQYTCPELEEILAPTYGCIVYQEQVMQIVMRLAGYTLGRSDLVRRAMSK 699 Query: 720 KIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 K + M ++++ F + G K GI + A IF+ + FA Y FNKSHAAAYAV Sbjct: 700 KKGDVMARERQNFVYGNEEEGVEGCIKRGIPEETANKIFDEMIDFAKYAFNKSHAAAYAV 759 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQTAW++ +YPVEF+AA +T + N +KI ++ R I I+PP +N V F V Sbjct: 760 VSYQTAWLRCYYPVEFMAALLTSVITNPKKITEYINTCRVMGISILPPDINEGEVGFSVA 819 Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + I Y LAAIK +G + + E A+ + L+DF R+ SK++N+R +E+L+ +GA Sbjct: 820 GDSIRYGLAAIKSLGKSVIDVMTQEREANGKYKDLKDFMGRLTSKEINKRTIENLIKSGA 879 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVE 946 LD FG +R Q + + + +K + ++F EK + ++ Sbjct: 880 LDSFGKTRKQQMLVYPVVLEQVNREKKESMSGQMSLFDFFSEEEKKEY--EMQYPDVGEY 937 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVY------KPILRKMGIKGYEES-VATIR-GNNIRLA 998 + + + E+ VLG Y SGHPL+ Y + R + EES A +R G + + Sbjct: 938 DDAQKLALEKDVLGIYVSGHPLEKYMDSIEKQTTARSTDFEPDEESGRAIVRDGQHYVVG 997 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ + K T+ + +VT + E FP Sbjct: 998 GLISNITAKLTKNNQNMAFVTLEDLYGTVEIIVFP 1032 >gi|153813022|ref|ZP_01965690.1| hypothetical protein RUMOBE_03430 [Ruminococcus obeum ATCC 29174] gi|149830824|gb|EDM85914.1| hypothetical protein RUMOBE_03430 [Ruminococcus obeum ATCC 29174] Length = 1155 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 385/1049 (36%), Positives = 596/1049 (56%), Gaps = 45/1049 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + +D++ + AITD ++ ++F + A AAGI P Sbjct: 2 NFTHLHVHTEYSLLDGSNKIKEYVDRVKELGMDSAAITDHGVMYGVIDFYRAARAAGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + + + +VLL +GY L+++VS+ ++ + Sbjct: 62 ILGCEVYV--APGSRFDREAGSGEDRYYHLVLLAENNQGYSNLMKIVSKGFV-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L L++ EG+I L+ +G + R + A+ L ++ +FG ++ LQ Sbjct: 119 RVDLQLLEKY-HEGIIALSACLAGEVARFLTRGMYEDAKAAALRYQDIFGKGNFFLELQD 177 Query: 189 HRGYDRYRESQVVQLAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H ++ +Q QL H + LVATN+ + ED + HDVL+ + ++ +DR Sbjct: 178 HGIPEQQNVNQ--QLLKMHRETGIDLVATNDVHYTLAEDAQPHDVLLCLQTGKKLADQDR 235 Query: 246 PRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R +Y+K+ EM +F EALENT +IA+RC ++ LP+F + Sbjct: 236 MRYEGGQYYVKSPEEMERLFPYATEALENTHKIAQRCHVEIEFGVTKLPKFGVPD-GYTS 294 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E NEL GLE R ++ ++RL++EL I M + YFLIV DFI Sbjct: 295 WEYLNEL---CFKGLEERYQP-------VTEELKERLNYELTTIKNMGYVDYFLIVWDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A+ ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC Sbjct: 345 KYARDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCF 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV+ KYG + V QI+TFG+L A+ +RDVGR + +PY+QVD + K+IP + Sbjct: 405 ERRQEVIDYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVMDLPYAQVDTIAKMIPQELN 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ + F++ D + L++ +++LEGL RH S HAAG+VI + +S+ VP Sbjct: 465 ITID-KALQMNPEFKKVYEEDKEIHELIDTAKRLEGLPRHTSMHAAGVVISQKDVSEYVP 523 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + R + VTQF M +E+ GL+K DFLGL+TLT++Q ++ + Q GVK+D+ I + Sbjct: 524 LSRASDGSI-VTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVHLVEQDTGVKLDMQHIDY 582 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D + L T + G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y Sbjct: 583 NDKKVLDSLGTGHSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIR 642 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 KN + I P ++P+LK T G I+YQEQVMQI + L+GY+L +D++RRAM KK Sbjct: 643 GKNRPDTIKYDCPQLEPILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKAA 702 Query: 724 EMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 M+K+++ F + G NGI + A I++ + FA Y FNKSHAAAYAV+SYQ Sbjct: 703 VMEKERQNFVYGNEAEGVPGCIANGIPEQTANKIYDDMIDFAKYAFNKSHAAAYAVVSYQ 762 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K +YPVEF+AA MT ++ K+ ++ Q R+ NI+I+PP VN F V + I Sbjct: 763 TAFLKYYYPVEFMAALMTSVIEMPIKVAEYIQVCRKMNIKILPPDVNRGAYGFSVDNGAI 822 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y L+AIK VG ++E A+ + SL+DF R+ + +N+R +E+ + AGALDC Sbjct: 823 RYGLSAIKSVGRPVINALVEEREANGEYRSLKDFIERL-TGTVNKRAIENFIKAGALDCL 881 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRF 952 +R Q + I +KN ++F E+ +I + + + Sbjct: 882 EGNRRQKMVVYSQIVDSIAQEKKNSFAGQMSLFDLVGEEDKKDYEIRMPDVEEYDKDMIL 941 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKM------GIKGYEES--VATIRGNNIRLAAMVVSK 1004 E+ VLG Y SGHPL+ Y+ I+ KM + EES G + + M+ K Sbjct: 942 GFEKDVLGIYLSGHPLEKYRNIMEKMISARTIDFQPDEESGIPKVYDGQKVIIGGMITEK 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K TR + ++T + E FP Sbjct: 1002 TIKYTRNNKVMAFLTLEDLMGTVEIVVFP 1030 >gi|315453387|ref|YP_004073657.1| DNA polymerase III, alpha chain [Helicobacter felis ATCC 49179] gi|315132439|emb|CBY83067.1| DNA polymerase III, alpha chain [Helicobacter felis ATCC 49179] Length = 1190 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 381/1000 (38%), Positives = 582/1000 (58%), Gaps = 56/1000 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL +H+ YSLL+GA + + +I +++++D N+F A++F GI+P Sbjct: 3 NFTHLHLHTEYSLLDGANKIKILAQRIKELGMTSVSMSDHGNMFGAIDFYTCMKKEGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + +NL+ Q + F + L EGY L+ L S+ +L +G Sbjct: 63 IIGIETYLHNAENLE-DKQSRQRF----HLCLYAKDQEGYANLMYLSSQAFL--KGFYYF 115 Query: 130 -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS----------QVAEKRLLTFKKLF 178 RI L+E +GLI + G I+ N+ + A++ ++ +F Sbjct: 116 PRINKKLLKE-RAKGLICSSACLQGEINWHLNLNNPKNKQYGAKGYEEAKRIACEYQDIF 174 Query: 179 GDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 GD Y+ + RH D+ Y + Q+++L+ + L+ATN++ + +ED A +V M VA + Sbjct: 175 GDDFYMEIMRHGITDQLYIDEQLIKLSLQTGIKLIATNDTHYTKQEDARAQEVAMCVAMN 234 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----HAPIL 292 KDR + + + Y+K+ ++M +F+D+PEALE+T EIAR+C L + + P Sbjct: 235 KTFGDKDRLKHSVHEFYIKSPAQMAELFADIPEALEHTQEIARKCQLELDLKDDSNPPTP 294 Query: 293 PRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 PRF KE D + E+ +KA GL+ RL I HA Y++RL++E+ Sbjct: 295 PRFKFTKEYATKEGLDFE-EDALYFAHKAREGLKKRLE--IIDPSQHAT-YQERLEYEIK 350 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 I MKF+GY LIV DFI+ A+++ IPVGPGRGS AGS+ A+ L ITDIDPL++ LLFER Sbjct: 351 TIVEMKFAGYMLIVWDFIRHARESGIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLLFER 410 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD D DFCQ RR E++ Y+ +KYG VAQ+ITF + AK +RDV R L Sbjct: 411 FLNPERVSMPDIDTDFCQRRRGEMLDYMVSKYGKYNVAQVITFNKMLAKGVIRDVARVLD 470 Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 MPY + D + KLIPN + +A + + + + ++ E + LE L R A Sbjct: 471 MPYKEADEMAKLIPNRLGITLK-EAFELEPKIAMLINTNKTAKQVWEFALNLENLNRSAG 529 Query: 527 THAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 HAA +V+ +R L P+Y R+ VTQ++MK++E LIKFDFLGLKTL+++ + Sbjct: 530 KHAAALVVDSERELWHKTPLYTSERTGGIVTQYSMKYLEAVDLIKFDFLGLKTLSVIDDA 589 Query: 586 LDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL-EGMQPDCIEDI 643 L + + K+D + DD Y + T+GIFQ+E SGM Q L + ++P C EDI Sbjct: 590 LKLIEKYAHQKIDFLSVDMDDPSVYQTIQEGNTIGIFQIE-SGMFQTLNKRLRPSCFEDI 648 Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 IA+++L RPGP+++ +V + NRK+G E I ++P+L+ T G I+YQEQVMQI Q Sbjct: 649 IAIIALGRPGPMESGMVDDFVNRKHGLEPITYAFDALEPILRPTYGTIVYQEQVMQIVQT 708 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 + G+SL EAD++RRAMGKK + M + +FI GA K G A ++F+L+ KFA YGF Sbjct: 709 IGGFSLGEADLIRRAMGKKDAQIMADNRAKFIEGARKRGYEADKAGDLFDLIVKFAGYGF 768 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSH+AAYA++++QTA++KTHY EF+AA ++ E ++E++ + +A I++ P V Sbjct: 769 NKSHSAAYAMLTFQTAYLKTHYKHEFMAAMISSECRHIEEVAHYVDEASSMGIEVQRPHV 828 Query: 822 NTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876 N V F+V G I + L AIKG G ++E F L+DF S++D K Sbjct: 829 NVSDVRFRVQEEGGKKHIVFGLEAIKGAGEGPLGTLVEIREKHGAFKDLQDFISKIDFSK 888 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 ++R+LE L+ +G+LD GY+R +L++LD I + + +K +FA + ++ Sbjct: 889 FSKRILEPLIKSGSLDNLGYNRRTMLENLDAICEEGRRKDKTNAQMRAGLFADAQ---TE 945 Query: 937 KITLEKFSVE----NSSVRFENEQRVLGFYFSGHPLDVYK 972 + LE E N+ + FE E +G YFSGHPL+ +K Sbjct: 946 RAHLELTPYEEYDINTLLDFEYE--CMGIYFSGHPLNEFK 983 >gi|313906491|ref|ZP_07839825.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6] gi|313468681|gb|EFR64049.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6] Length = 1157 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 379/1063 (35%), Positives = 592/1063 (55%), Gaps = 72/1063 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YSLL+G+ + + + ++ A AITD ++ + F ++ AAGI+P Sbjct: 2 SFVHLHTHTEYSLLDGSNKIKDYVARVKELGMNAAAITDHGVMYGCIAFYKECLAAGIRP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + + ++LL EGY L+++VSR + + Sbjct: 62 ILGCEVYV--APGSRFQKEAGNSEERYYHLILLAENNEGYHNLLKIVSRGF-TEGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L L+E EG+I L+ +G + N + + L ++++FG ++ LQ Sbjct: 119 RVDLEVLREY-HEGIICLSACLAGEVATYLAKNMYEEGLQAALRYQEIFGKGNFFLELQD 177 Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G + + Q+++++ + LV TN+ + ED +AHD+L+ + VS ++R Sbjct: 178 H-GIPQQQVVNPQLLRMSEETGIELVCTNDCHYTRAEDADAHDILLCIQTGKKVSDENRL 236 Query: 247 RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR----------- 294 R +Y+K+ EM ++F +ALENT +IA RC+ ++ H LP+ Sbjct: 237 RYEGGQYYVKSEEEMAALFPYAKQALENTQKIADRCNVEIRFHELKLPKYEVPEGYTSWT 296 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMK 352 +++K C+D I K Y + R+RLD+EL+VI M Sbjct: 297 YLQKICED------------------------GIRKLYDPVTDEIRERLDYELDVIRTMG 332 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + YFLIV D+I +AK++ IPVGPGRGS AGS+ +YA+ IT++DPL++SLLFERFLNP+R Sbjct: 333 YVDYFLIVWDYIHFAKEHGIPVGPGRGSAAGSIVSYAMGITELDPLKYSLLFERFLNPER 392 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D+DF +RR EVI YV KYG +RV QI+TFG++ A+ A+RDVGR L +PY+ Sbjct: 393 VSMPDIDVDFGFERRQEVIDYVVRKYGKDRVVQIVTFGTMAARNAIRDVGRVLDLPYALC 452 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 D K+IP + + +A+ + ++ AD + L+++++KLEGL RH S HAAG+ Sbjct: 453 DSTAKMIPQELNITID-KALKMNPELKKEYEADDQIRYLIDMARKLEGLPRHTSMHAAGV 511 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI + + + VP+ + TQ+NM +E+ GL+K DFLGL+TLT++Q ++ +AQR Sbjct: 512 VISSKEVDEFVPL-QTAADGTVTTQYNMTELEELGLLKMDFLGLRTLTVIQDAVS-MAQR 569 Query: 593 --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 V +D+ I ++D ++ G+FQLES+GM+ ++ ++P +EDI+A V+LY Sbjct: 570 NHNVSIDMMKIDYNDPAVMKMIGEGKDEGVFQLESAGMKSFMKELKPSSLEDIVAGVALY 629 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I Y K +++ P + +L+ T G I+YQEQVMQI + L+GYS + Sbjct: 630 RPGPMDFIPQYIRGKKHPDEVQYDCPQLKAILEPTYGCIVYQEQVMQIVRELAGYSYGGS 689 Query: 711 DVLRRAMGKKIKEEMDKQK--------ERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 D+LRRAM KK M++++ ER I G +NGI + +A I++ + FA Y FN Sbjct: 690 DLLRRAMSKKKMHVMEEERRNFVYGNEERGIPGCIRNGIDEKVANKIYDDMIDFAKYAFN 749 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSHAAAYA++S+QTAW+K +YPVEF+AA MT +DN K ++ R I+I+PP++N Sbjct: 750 KSHAAAYALVSFQTAWLKCYYPVEFMAALMTSVIDNTAKCAEYMMHTRALGIEILPPNIN 809 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRV 881 F V D +I Y+L+AIKGVG I +E + F +L DFC R+ +++N+R Sbjct: 810 KSEGTFSVEDGKIRYALSAIKGVGRPVIDAISLERDQNGSFKNLGDFCRRLTGREVNKRT 869 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKIT 939 LE+ + AGA DC G +R Q +Q + A +KN ++F E+ +I Sbjct: 870 LENFIKAGAFDCLGGTRRQFMQVYTLVADQAVKEKKNNATGQLSLFDLMGEEDRQQYEIR 929 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-------- 991 L + E+ V G Y SGHPL+ + RK I A Sbjct: 930 LPDVGEFDKEEILSFEKEVTGIYISGHPLESDEKKWRK-NITCVSADFALPEEGNLPKLK 988 Query: 992 -GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 GN + ++V K K T K + ++T + E FP Sbjct: 989 DGNRETIGGIIVDKTIKYTSKNQTMAFLTIEDLVGSVEVIVFP 1031 >gi|124002816|ref|ZP_01687668.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134] gi|123992044|gb|EAY31431.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134] Length = 1403 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 381/1045 (36%), Positives = 584/1045 (55%), Gaps = 61/1045 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++K F HL VHS +S+L+ S+ ++ PAIA TD N+ +A + + Sbjct: 234 VDKFIPFSHLHVHSQFSILQSTASVGGLIKFAKEHGMPAIAFTDHGNMHAAFKAVGEGAK 293 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 ++ IIGC+ + Q+ K T K+ + VLL E Y RL +L S Y+ Sbjct: 294 NDVKVIIGCEFYV-AQERTK-TKFTKSDRDRRFNQVLLAKDQEAYHRLAKLSSLGYIEGY 351 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI ++E EGLI LTG G I AE+ + LFGD YV Sbjct: 352 YAGFPRIGKDLIEEY-HEGLIALTGNLQGEIPDLILNQGEHEAEEAFKWWHNLFGDDFYV 410 Query: 185 NLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + RH + R ++V+ + A + + +ATNN ++ +ED +AHD L+ V + +K Sbjct: 411 EIMRHGQEEEERVNEVLLKFAAKYGVKPIATNNVYYIGDEDADAHDSLLCVKGA---DKK 467 Query: 244 DRPRV-TPD--------------HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 P++ TPD +Y+K EM +FSD+P ALE T EI +CS I Sbjct: 468 STPKMFTPDIKRRNLRYGMPNEEYYMKTPEEMNELFSDIPIALETTQEIVDKCSPIKLKR 527 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 ++P + E +++ LR+ G R G ++ R+RLD ELN+I Sbjct: 528 DILMPVY---EMPSEFATQDDYLRHLTYEGATKRY-------GEITEEIRERLDHELNII 577 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 M F GYFLIV DFI A+ + VGPGRGS AGS A+ + IT+IDP++++LLFERFL Sbjct: 578 KSMGFPGYFLIVQDFINAARDMGVFVGPGRGSAAGSAVAFCIGITNIDPIKYNLLFERFL 637 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD DIDF + R + I YV +KYG +VAQIIT+G++ AK A++DV R L++P Sbjct: 638 NPERVSMPDVDIDFDDEGRQDAINYVIDKYGKNQVAQIITYGTMAAKMAIKDVARVLELP 697 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD---RLLEISQKLEGLYRHA 525 ++L K +P+ P + A A+ ++ LA P D ++L ++ LEG R Sbjct: 698 IPDSNKLAKYVPDKPGTKLK-DAFAEVQELKDV-LARPEGDLENQVLRQAKILEGSVRGT 755 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 HAAG++I L + +P+ +DL VTQF+ K IE AG++K DFLGLKTLT+++ + Sbjct: 756 GIHAAGVIIAPDDLLKYIPVCTSKDADLLVTQFDGKVIEDAGMLKMDFLGLKTLTVIKDA 815 Query: 586 LDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 L + + + +D+ IP DD T L T+G FQ ES GMR L+ ++P IED+I Sbjct: 816 LRMIKKNYDIDIDMDKIPLDDQATLELYQNGETVGTFQFESEGMRMYLKQLKPTNIEDLI 875 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 A+ +LYRPGP+ I + NRK+G E++ H L++P+L T G+++YQEQ+MQ AQ+L G Sbjct: 876 AMNALYRPGPLQFIPNFINRKHGTEEVEYPHDLLEPILNNTYGIMVYQEQIMQTAQILGG 935 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNK 763 YSL AD+LRRAMGKK EEMD+Q+ F+ GA + +GI + + +FE++ +FA YGFN+ Sbjct: 936 YSLGGADLLRRAMGKKKLEEMDRQEVIFMKGAKEIHGIPEEKSRKVFEVMKEFAKYGFNR 995 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAY+V++YQTA++K +YP E++A+ +T M+N++K+ F + + +QI+ P VN Sbjct: 996 SHSAAYSVVAYQTAYLKANYPSEYMASVLTHNMNNIDKVTFFIDETKNMGLQILGPDVNE 1055 Query: 824 PCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRV 881 F V +I + L A+KG G +I+E + PF + DF RV+ + +N++ Sbjct: 1056 SEQSFTVNPVGQIRFGLGAVKGTGDAAVENIIEERKKNGPFKDMFDFARRVNLRTVNKKS 1115 Query: 882 LESLVFAGALDCFG-YSRMQLLQSLDN--------IQKYAQWVEKNRTNKHENIFAHEKG 932 E AGA D G R Q ++ N I K+ +K N ++F Sbjct: 1116 FECFAQAGAFDNLGKLHRAQFFAAMPNDTATFLERIIKFGNAYQKEIENAKTSLFGA--- 1172 Query: 933 TFSDKITLEKFSVENSSV-----RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 S +T+ + V + + E+ V+GFY SGHPLD Y+ ++K G ++ + Sbjct: 1173 --SGAVTIAQPKVPYTEPWSQLEKLNREKEVVGFYMSGHPLDRYRAGMKKFGAVALDK-I 1229 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKG 1012 + + + +A +V K+ ++T+ G Sbjct: 1230 ESFQHQEVTVACIVTKKELRQTKNG 1254 >gi|325507930|gb|ADZ19566.1| DNA polymerase III DnaE [Clostridium acetobutylicum EA 2018] Length = 1164 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 388/1068 (36%), Positives = 602/1068 (56%), Gaps = 74/1068 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+G+ + ++++ +IAITD ++ +EF + A GI+PI Sbjct: 8 FVHLHVHTEYSLLDGSGKVKKLVERAKELGMKSIAITDHGAMYGCVEFYKAAKEVGIKPI 67 Query: 71 IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IGC++ + + ++K + + +VLLV GY+ L+E+VS + + Sbjct: 68 IGCEIYVAGKSMHIKHPDAENETY----HLVLLVKNEIGYKNLMEIVSTASI-EGFYYKP 122 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ +L +EGLI + G + ++ + A+K L +K+ F D Y+ LQ H Sbjct: 123 RVDHEYLMS-HSEGLIASSACFGGEVQSYILKDNLEKAKKAALFYKETFKDGFYLELQYH 181 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D + +V ++ ++PL+ATN+ ++++ED AHD+L+ + + +++R R Sbjct: 182 ALKDDMKVNDTLVNMSKELDIPLIATNDVHYINKEDSIAHDILLCIQTGKTIDEENRMRY 241 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ YLK++ EM FS + EAL NT +IA C+F + H LP F E +D Sbjct: 242 APEQFYLKSQEEMYEQFSYVKEALLNTSKIADECNFEYKFHESKLPNFPLPEGED----H 297 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ GL R ++RL++EL +I M + YFLIV DFI++A Sbjct: 298 YEYLKKLCYEGLNERYNP-------ITDTIKERLEYELGIIKEMGYVDYFLIVWDFIKFA 350 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++N +P GPGRGS AGS+ AY L IT IDP+++SL+FERFLNPDR+SMPD D DFC + R Sbjct: 351 RENGVPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPDRVSMPDIDSDFCYENR 410 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN------ 481 +VI YV KYG + V+QI+TFG++ A+ +RDVGRA+ Y +VD++ K+IPN Sbjct: 411 QKVIDYVVEKYGKDCVSQIVTFGTMAARLCIRDVGRAMNYSYGEVDKIAKMIPNVLNINI 470 Query: 482 DPAHPVS--LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 D A ++ L+AI DD D + L++IS+KLEGL RH STHAAG+VI +PL Sbjct: 471 DKALEMNPELKAIYDD---------DDRIKDLIDISRKLEGLPRHTSTHAAGVVISSQPL 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 VP+ ++ S V QF M +E+ GL+K DFLGL+TLT++ ++ + Q R + +D+ Sbjct: 522 VNYVPLLKNEES--IVAQFTMGILEELGLLKMDFLGLRTLTVINDTIKMVKQNRNIDIDI 579 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I FDD+ Y ++ T+G+FQLES+GM ++ ++PD +EDIIA +SLYRPGP++ I Sbjct: 580 DDIDFDDYGVYKMIGEGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRPGPMNEI 639 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y KN E+I + P + +L T G IIYQEQVMQI + L+GYS+ +D++RRAM Sbjct: 640 PRYIRNKNNPEEIKYVTPELKHILDVTYGCIIYQEQVMQIVRDLAGYSMGRSDLVRRAMS 699 Query: 719 KKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHA 766 KK M++++ FI G KNGIS+ IA IF+ + FA Y FNKSHA Sbjct: 700 KKKHHVMEEERHNFIHGVVDENGNVEVPGCIKNGISEKIANEIFDSMMDFASYAFNKSHA 759 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYAV++Y+TA++ +YP E+LAA + M N EK+ + + A + IQ++PP +N Sbjct: 760 AAYAVVAYETAYLIHYYPAEYLAAMLNSVMGNSEKVAFYIRCAEELKIQVLPPDINGSYS 819 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V ++ I + LAAIK VG I+ A +K F S DFC+++D+ ++N+R +ES+ Sbjct: 820 RFTVKEDTIRFGLAAIKNVGFNVIESIVRARNEKGNFISFTDFCNKIDTSEVNKRAVESI 879 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + +G D G R +LL + I K N+F +++ ++ + Sbjct: 880 IKSGGFDTLGVYRSKLLAVFEKIMDGISGQRKKNIKGQMNLFTDFVQDDYEEVEIQYPDI 939 Query: 946 ENSSVRF--ENEQRVLGFYFSGHPLDVYKPILRKM------------------GIKGYEE 985 + ++ E+ + G Y SGHPL+ Y+ L+ M G+K +E Sbjct: 940 KEFDKKYLLAMEKEMTGLYLSGHPLEDYEETLKNMTSIKISDIVAPQSLEDNDGVK-LDE 998 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G + + +V S +K TR + + ++ + E FP Sbjct: 999 NTDVQDGTRVIIGGIVTSVTKKVTRSNTMMAFIKLEDMYAAIEVVIFP 1046 >gi|169334376|ref|ZP_02861569.1| hypothetical protein ANASTE_00775 [Anaerofustis stercorihominis DSM 17244] gi|169259093|gb|EDS73059.1| hypothetical protein ANASTE_00775 [Anaerofustis stercorihominis DSM 17244] Length = 1215 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 364/1018 (35%), Positives = 585/1018 (57%), Gaps = 93/1018 (9%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F HL VH+ YSLL+G + + + +IAITD N+F +EF + GI Sbjct: 2 SIPFTHLHVHTEYSLLDGFCKIKELPKLVKDMGMDSIAITDHGNMFGVIEFYRACRKEGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI--VLLVSTAEGYQRLIELVSRMYLLDQG 125 +P++GC++ + M D +G+ P S +L GY+ L+++VS Y + Sbjct: 62 KPVLGCEIYMTMGDR-----KGRDPMNDKQSFHFILFAENEIGYKNLMKVVSIAYT-EGF 115 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 R L++ +EG+I + G I R + A+K L F ++G D ++ Sbjct: 116 YYKPRADFDLLEKY-SEGIIATSACIGGIIPRKINSGEIEEAKKYLERFINIYGKDNFFL 174 Query: 185 NLQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 +Q H G + + + +++++A + + L+ATN+S +L + D EAHDVL+ V ++ +S Sbjct: 175 EIQDH-GLEEEKTANEELIKMAKEYGVGLIATNDSHYLRKSDSEAHDVLLCVQTASNLSD 233 Query: 243 KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILP----- 293 ++R R D Y+K EM +F PEA+ENT +IA RC+ ++ H P+ P Sbjct: 234 ENRMRFPNDEFYIKTPEEMSDLFKYCPEAIENTHKIAERCNVEIEFGHYHLPVFPLPEGM 293 Query: 294 ---RFIEKEC-DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 ++++K C D + K+ +N ++ +RL++EL VI Sbjct: 294 TSQQYLKKLCMDGLYKKYDNV-----------------------TKELTERLEYELGVIN 330 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F+ YFLIV DFI +++ ++IPVGPGRGS AGS+ +Y L IT IDP++++L+FERFLN Sbjct: 331 DMGFNDYFLIVWDFINYSRTHDIPVGPGRGSAAGSIVSYTLDITQIDPIKYALIFERFLN 390 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 +R+SMPD DIDFC ++R E I YV KYG + V+QI+TFG+L+ KAA++D+ R++ + + Sbjct: 391 NERVSMPDIDIDFCYEKRHEAIEYVIEKYGFDNVSQIVTFGTLKPKAAVKDIARSMGISF 450 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 Q +++ KLIP D A +AIA + + DP++ +LL+ ++ +EG+ RH+STHA Sbjct: 451 DQSNKIAKLIP-DEAKITIEKAIAMNPELHQMYDEDPTIKKLLDTAKAVEGMPRHSSTHA 509 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG++I DR +S VP+Y + D QFNM +E+ GL+K DFLGLK LT+++ +LD + Sbjct: 510 AGVIISDRAVSDYVPLY--LNKDSIAAQFNMTTVEELGLLKMDFLGLKNLTVIKHTLDNI 567 Query: 590 A-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 +G+ VD+ I D + ++ T+G+FQL S GM+ ++ ++P+ EDIIA +S Sbjct: 568 KLSKGIDVDIDNISLTDQNVFDTISRGDTIGVFQLASPGMQSFMQRLKPNTFEDIIAGIS 627 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I Y + K+ I +HP ++P+L T G+IIYQEQVMQI + L+GYS+ Sbjct: 628 LYRPGPMDMIPTYIDNKHNPANISYLHPSLEPILNVTYGIIIYQEQVMQIVRDLAGYSMG 687 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKN----------------GISKTIAVNIFEL 752 +D++RRAMGKK E + K++E F+ G + GI + I++L Sbjct: 688 RSDLIRRAMGKKKHEVIAKEREIFLHGNEEAFNKGEDKEKVHGCVAIGIDEKTGNEIYDL 747 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSHAAAY VISYQTA++KT+YP EF+AA +T+ + + +++ + ++ Sbjct: 748 MEKFASYGFNKSHAAAYGVISYQTAYLKTYYPAEFMAALITVYIGSDDRM-LYMNHLKEK 806 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871 I+++PP VN F V + + + L A+KG+G + I++A +K F S DF ++ Sbjct: 807 GIKLLPPDVNKSYSRFTVDNGSVRFGLLALKGLGESAIEEIIQAREEKGDFTSFPDFVNK 866 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLL------------QSLDNIQKYAQWVEKNR 919 ++ LN++ +ESL+ +GA D G +R +L Q NI +E Sbjct: 867 IEFNSLNKKGVESLILSGAFDSLGNNRRELYCVYEDFLNDTLRQRKQNIAGQTTLLEMLS 926 Query: 920 TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 ++E I ++T+ + + + + E+ V+G Y SGHPL ++ L K Sbjct: 927 QEENEQI----------EMTIPTMAEFETKEKLKFEKEVMGMYISGHPLAEHEEDLNK 974 >gi|269926189|ref|YP_003322812.1| DNA polymerase III, alpha subunit [Thermobaculum terrenum ATCC BAA-798] gi|269789849|gb|ACZ41990.1| DNA polymerase III, alpha subunit [Thermobaculum terrenum ATCC BAA-798] Length = 1180 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 378/1053 (35%), Positives = 604/1053 (57%), Gaps = 57/1053 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL +HS YSLL+G + + + A AIA+TD ++ A+E +A AGI Sbjct: 2 SSDFVHLHLHSDYSLLDGLGKIKDYVSLAKAYGMKAIALTDHGVMYGAIEMYTEALEAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC+L + + + + + +++L EGYQ LI+LVS +L + Sbjct: 62 KPIIGCELYVAPRSRHDREKRLDSDYA---HLLVLAKDYEGYQNLIKLVSYAFL-EGYYY 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 RI L + ++GLI+ + G + + + A + ++ + G + ++ L Sbjct: 118 KPRIDHELLAKY-SKGLIVTSSCIGGEVPQLLLQGKDKEARELADKYRSIVGRENYFIEL 176 Query: 187 QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H + R +++++LA E+PLVAT + + +ED D+L+ V V+ K+R Sbjct: 177 QDHPFEEQRIANTKLIELAKDLEIPLVATCDVHYPRQEDAAIQDILLCVQTGKQVTDKNR 236 Query: 246 PRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R++ D +Y+++ EM F D PEA++NT IA C+ + + ILP F E D+Q Sbjct: 237 MRMSSDTNYMRSPQEMEQAFRDYPEAIKNTALIAEMCNLQIPMGKWILPHFDVPEGYDLQ 296 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR GL + ++ Q+ R RL++EL+VI ++ Y LIV DF+ Sbjct: 297 ----SYLRYLCEEGLRQKYSE-------VTQEIRDRLEYELDVINTKGYTAYMLIVQDFV 345 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WA+ I V RGS AGS+ +Y L IT DP+ + L FERFL R S PD D+DF Sbjct: 346 NWARSRGIAV-TSRGSAAGSLVSYLLNITTADPIEYKLPFERFLTIHRPSPPDIDMDFED 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR+EVI YV +KYG E VAQIITFG+++A+AA+RDVGRAL + YS D + K+I P Sbjct: 405 KRREEVIEYVTSKYGEENVAQIITFGTMEARAAVRDVGRALGISYSDTDTIAKMI--QPG 462 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ + R+ D + +L++++ KLEG+ RHASTHAAG++I P+ P Sbjct: 463 WSIK-EALENSLALRQWYERDERIKQLIDVASKLEGVTRHASTHAAGVIISREPIINYAP 521 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + +D P+ QF+M+ EK GL+K DFLGL L++L +++ + Q RG+ ++L +P Sbjct: 522 LQKDKNGSRPLVQFDMRMCEKIGLLKMDFLGLANLSILGRAVKTIKQTRGIDIELDKLPL 581 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY LL++ T G+FQLES+GMR+ ++ ++P I D+ A+++LYRPGP+D I Y Sbjct: 582 DDTKTYELLSSGETTGVFQLESAGMRRYIKELKPSNIRDVAAMIALYRPGPMDMIPTYIA 641 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+E + + P ++P+LK++ GV++YQ+ ++ IA ++GY+ EAD LR+A+GKKI+E Sbjct: 642 RKHGREPVEYLVPGLEPILKDSYGVLVYQDDILLIAIEIAGYTWEEADKLRKAVGKKIRE 701 Query: 724 EMDKQKERFISGASKN-GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E++ Q+++FI G ++ G+S A +++ + FA YGFNK+HAAAY++++YQTA++K + Sbjct: 702 ELEAQRDKFIKGCQEHGGLSPEKARELWDWMEPFARYGFNKAHAAAYSLVAYQTAYLKAN 761 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-------- 834 YP E++++ +T+ MDN EK+ + + I+++PPSVN +F + Sbjct: 762 YPSEYMSSLLTVGMDNSEKVASGIVECNRMGIRVLPPSVNDSFEEFTLEPQSQRPGEPIP 821 Query: 835 IYYSLAAIKGVGTTTARHIM---EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I + L A+K VG+ I+ E+ DK F S E FC+ VD K++N+R LESL+ AGA Sbjct: 822 IRFGLGAVKNVGSGPISAIVSARESLPDKRFKSFEHFCTVVDFKQINKRALESLIKAGAF 881 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-----ITLEKFSVE 946 D FG+ R QLL ++D Q +++ ++F FS + +TL + Sbjct: 882 DEFGH-RSQLLAAIDEAIALNQKMQRASDLGQFSLFGD---AFSSQDHLPSLTLPEVDEA 937 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 E+ +LG Y S HPL+ R E + G +R+AAM+V+ Q Sbjct: 938 PKEQLLAWEKEMLGLYLSEHPLNAVLGKRRLDSTSLISEISEEMVGQTVRVAAMLVNPQI 997 Query: 1007 KKTRK------------GSRIGWVTFSEPAKEY 1027 + T++ S I +V F E ++Y Sbjct: 998 RTTKRQQEMLIGKLEDQTSSIDFVVFPEQYEKY 1030 >gi|15893807|ref|NP_347156.1| DNA polymerase III DnaE [Clostridium acetobutylicum ATCC 824] gi|15023379|gb|AAK78496.1|AE007566_6 DNA polimerase III, alpha chain (dnaE) [Clostridium acetobutylicum ATCC 824] Length = 1167 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 388/1068 (36%), Positives = 602/1068 (56%), Gaps = 74/1068 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+G+ + ++++ +IAITD ++ +EF + A GI+PI Sbjct: 11 FVHLHVHTEYSLLDGSGKVKKLVERAKELGMKSIAITDHGAMYGCVEFYKAAKEVGIKPI 70 Query: 71 IGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IGC++ + + ++K + + +VLLV GY+ L+E+VS + + Sbjct: 71 IGCEIYVAGKSMHIKHPDAENETY----HLVLLVKNEIGYKNLMEIVSTASI-EGFYYKP 125 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ +L +EGLI + G + ++ + A+K L +K+ F D Y+ LQ H Sbjct: 126 RVDHEYLMS-HSEGLIASSACFGGEVQSYILKDNLEKAKKAALFYKETFKDGFYLELQYH 184 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D + +V ++ ++PL+ATN+ ++++ED AHD+L+ + + +++R R Sbjct: 185 ALKDDMKVNDTLVNMSKELDIPLIATNDVHYINKEDSIAHDILLCIQTGKTIDEENRMRY 244 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ YLK++ EM FS + EAL NT +IA C+F + H LP F E +D Sbjct: 245 APEQFYLKSQEEMYEQFSYVKEALLNTSKIADECNFEYKFHESKLPNFPLPEGED----H 300 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ GL R ++RL++EL +I M + YFLIV DFI++A Sbjct: 301 YEYLKKLCYEGLNERYNP-------ITDTIKERLEYELGIIKEMGYVDYFLIVWDFIKFA 353 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++N +P GPGRGS AGS+ AY L IT IDP+++SL+FERFLNPDR+SMPD D DFC + R Sbjct: 354 RENGVPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPDRVSMPDIDSDFCYENR 413 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN------ 481 +VI YV KYG + V+QI+TFG++ A+ +RDVGRA+ Y +VD++ K+IPN Sbjct: 414 QKVIDYVVEKYGKDCVSQIVTFGTMAARLCIRDVGRAMNYSYGEVDKIAKMIPNVLNINI 473 Query: 482 DPAHPVS--LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 D A ++ L+AI DD D + L++IS+KLEGL RH STHAAG+VI +PL Sbjct: 474 DKALEMNPELKAIYDD---------DDRIKDLIDISRKLEGLPRHTSTHAAGVVISSQPL 524 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 VP+ ++ S V QF M +E+ GL+K DFLGL+TLT++ ++ + Q R + +D+ Sbjct: 525 VNYVPLLKNEES--IVAQFTMGILEELGLLKMDFLGLRTLTVINDTIKMVKQNRNIDIDI 582 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I FDD+ Y ++ T+G+FQLES+GM ++ ++PD +EDIIA +SLYRPGP++ I Sbjct: 583 DDIDFDDYGVYKMIGEGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRPGPMNEI 642 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y KN E+I + P + +L T G IIYQEQVMQI + L+GYS+ +D++RRAM Sbjct: 643 PRYIRNKNNPEEIKYVTPELKHILDVTYGCIIYQEQVMQIVRDLAGYSMGRSDLVRRAMS 702 Query: 719 KKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHA 766 KK M++++ FI G KNGIS+ IA IF+ + FA Y FNKSHA Sbjct: 703 KKKHHVMEEERHNFIHGVVDENGNVEVPGCIKNGISEKIANEIFDSMMDFASYAFNKSHA 762 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYAV++Y+TA++ +YP E+LAA + M N EK+ + + A + IQ++PP +N Sbjct: 763 AAYAVVAYETAYLIHYYPAEYLAAMLNSVMGNSEKVAFYIRCAEELKIQVLPPDINGSYS 822 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V ++ I + LAAIK VG I+ A +K F S DFC+++D+ ++N+R +ES+ Sbjct: 823 RFTVKEDTIRFGLAAIKNVGFNVIESIVRARNEKGNFISFTDFCNKIDTSEVNKRAVESI 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + +G D G R +LL + I K N+F +++ ++ + Sbjct: 883 IKSGGFDTLGVYRSKLLAVFEKIMDGISGQRKKNIKGQMNLFTDFVQDDYEEVEIQYPDI 942 Query: 946 ENSSVRF--ENEQRVLGFYFSGHPLDVYKPILRKM------------------GIKGYEE 985 + ++ E+ + G Y SGHPL+ Y+ L+ M G+K +E Sbjct: 943 KEFDKKYLLAMEKEMTGLYLSGHPLEDYEETLKNMTSIKISDIVAPQSLEDNDGVK-LDE 1001 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G + + +V S +K TR + + ++ + E FP Sbjct: 1002 NTDVQDGTRVIIGGIVTSVTKKVTRSNTMMAFIKLEDMYAAIEVVIFP 1049 >gi|237804896|ref|YP_002889050.1| DNA polymerase III subunit alpha [Chlamydia trachomatis B/TZ1A828/OT] gi|231273196|emb|CAX10109.1| DNA polymerase III alpha subunit [Chlamydia trachomatis B/TZ1A828/OT] Length = 1237 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 386/1059 (36%), Positives = 584/1059 (55%), Gaps = 68/1059 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+P Sbjct: 2 TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + + K+ ++LL EGY+ L L S Y +G V Sbjct: 62 IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117 Query: 130 -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q Sbjct: 118 PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175 Query: 189 HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226 H+ Y ++ E Q+ LA + L P VATN+ +L+ +D+ Sbjct: 176 HKSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235 Query: 227 AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276 AH++L+ V ++ + + K + + + Y K+ M +F+ PE + NT Sbjct: 236 AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCI 295 Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327 +A RC L P ++ + E E + A LE QG Sbjct: 296 VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355 Query: 328 --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 IAK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSG Sbjct: 356 GHIAKKFPGEDPLTLVKERLKLESSIIIPKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + Sbjct: 416 AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501 VAQIITFG+++AK A++DVGR L P ++V+ + K IP+ A S A+ D R+ Sbjct: 476 NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 + D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK Sbjct: 534 YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E G++K DFLGLKTLT + + + ++ G+ + + IP DD T+ LL T+GI Sbjct: 594 PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ+ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P Sbjct: 654 FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NG Sbjct: 714 ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E Sbjct: 774 IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859 K+ K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + Sbjct: 834 KVGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKN 893 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 P+ SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 894 GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEA 953 Query: 920 TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976 F+ + +IT+ +V S + + E+ +LG Y + HP+D + +L Sbjct: 954 ATGVLTFFSLDSMARDPVRITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013 Query: 977 KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008 + + + G IR + + S +QKK Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052 >gi|167750256|ref|ZP_02422383.1| hypothetical protein EUBSIR_01230 [Eubacterium siraeum DSM 15702] gi|167656818|gb|EDS00948.1| hypothetical protein EUBSIR_01230 [Eubacterium siraeum DSM 15702] Length = 1109 Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust. Identities = 375/1004 (37%), Positives = 569/1004 (56%), Gaps = 39/1004 (3%) Query: 41 QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSI 99 Q A+A+TD ++ +++F + GI+ IIGC++ + + K T P + Sbjct: 3 QTAVALTDHGVMYGSIDFYNECVENGIKAIIGCEVYVAPRTRFDKSTKSDMKPH----HL 58 Query: 100 VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159 VLL EGY+ L +LV+ Y + R+ L+ ++GLI L+ SG + R Sbjct: 59 VLLCKDNEGYKNLSKLVTLGYT-EGFYNKPRVDRELLRRY-SKGLICLSACISGELARTL 116 Query: 160 FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSL 218 A + ++++FG+ Y+ LQ H ++ R ++++A LVATN++ Sbjct: 117 LDGRLADAVTLVKEYREIFGEDYYIELQSHGISEQERILPYLLRVAKDTGTQLVATNDAH 176 Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPE-ALENTVE 276 ++ +ED VL +A +T + K+ + D YLK+ EM ++ P+ A +NTV+ Sbjct: 177 YVEKEDSYVQRVLTCIATNTTLDDKNSMQFATDEFYLKSEDEMKAL--GFPQSAYDNTVK 234 Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336 IA +C+ ILP F + D+ + ++R GL R ++ Sbjct: 235 IAEKCNVSFTFGHTILPFFKAEGYDNNEIYFNAQVRK----GLVKRYGDPV------PKE 284 Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 R ++E++VI +M F YFLIVADFI +AK+N I VGPGRGSGAGSV AY L ITDID Sbjct: 285 VLDRAEYEMSVIKKMGFIDYFLIVADFIGYAKRNGIAVGPGRGSGAGSVCAYCLGITDID 344 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 P+RF+LLFERFLNP+R++MPDFD+DFC RR EVI YV KYG + VAQIITFG++ A+ Sbjct: 345 PIRFNLLFERFLNPERVTMPDFDVDFCYIRRQEVIDYVVRKYGRDHVAQIITFGTMAARG 404 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516 A+RD GRA+ +PY +VD + KLIP H A+ + + +D V L+E ++ Sbjct: 405 AIRDAGRAMGLPYGKVDTVAKLIPMS-MHSTIDGALKSEKELVKLASSDSEVSLLIETAK 463 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 K+EG+ R+ S HAAGIVI P++ VP+Y++ ++ +TQ+ M IE+ GL+K DFLGL Sbjct: 464 KIEGMARNTSIHAAGIVITRDPVADYVPLYQNSEGEV-MTQYTMTAIERLGLLKMDFLGL 522 Query: 577 KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 + LT++Q + + D+ IP +D ETY ++++ GTLG+FQ ES+GM L M+ Sbjct: 523 RYLTVIQDCCKLVVKSCPDFDIEKIPENDAETYDMMSSGGTLGVFQFESAGMTSLLSRMK 582 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 P +ED+ A +SLYRPGP+D+I Y + EKI HPL+ +L T G I+YQEQVM Sbjct: 583 PRSVEDLTAALSLYRPGPMDSIPTYLANRRNPEKIRYKHPLLKGILDVTYGCIVYQEQVM 642 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 I ++L+GYS AD++RRAM KK E M K++ F+ GA N + + +A IF+ + F Sbjct: 643 MICRVLAGYSYGRADIVRRAMAKKKPEVMVKERATFVEGAVANNVDRQVAEEIFDDMMSF 702 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A Y FNKSHAAAY++++Y+TA+++ HY E++ A +T + K ++ D Q +++ Sbjct: 703 ASYAFNKSHAAAYSLLAYRTAYLRCHYYKEYMVALLTSVIGWGGKTAEYIGDLAQHGLKL 762 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 +PP VN F ++ I + L AIK VG I+E PF SL DFC R+ K Sbjct: 763 LPPHVNYSETGFSCENDGIRFGLLAIKNVGANMIADIIEERTKHPFKSLFDFCERMSDKN 822 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLD---NIQKYAQWVEKNRTNKHENIFAHEKGT 933 +N+R LESL+ GA D G +R +++ SL+ + +E + E+ A E G Sbjct: 823 INKRALESLIKCGAFDGLGNNRREMMISLELMLDTLSQRHDLEGQMSLMGEDDAADE-GA 881 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 F K E + S E+ +LG Y SGHP D + I R+ GYE + + N Sbjct: 882 FQIKPADEYSHAQLLSY----EKEMLGIYISGHPADPFYRIARE---SGYENIGSILESN 934 Query: 994 ----NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 N+R+ A++ S + T+ G +G++ + + E E FP Sbjct: 935 KDKQNVRVTALLTSVRNHITKSGKTMGFIVIEDASGEIECLVFP 978 >gi|194476714|ref|YP_002048893.1| DNA polymerase III subunit alpha [Paulinella chromatophora] gi|171191721|gb|ACB42683.1| DNA polymerase III subunit alpha [Paulinella chromatophora] Length = 1175 Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust. Identities = 385/1062 (36%), Positives = 595/1062 (56%), Gaps = 55/1062 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA + ++ PA+A+TD ++ ++E + AAGI+P Sbjct: 2 TFVPLHNHSDYSLLDGASQIPQMVKLAKELNMPALALTDHGVMYGSIELLKLCKAAGIKP 61 Query: 70 IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG ++ + + D K + +V+L A GY+ L+++ S +L Sbjct: 62 IIGNEMYVINGSINDPQKKKERRY-------HLVVLAKNALGYKNLVKITSISHLRGMRG 114 Query: 127 QSV--RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + R C+ L E +EGLI+ T G I ++ A + ++K+FGD Y Sbjct: 115 RGIFARACIDKQLLEQYSEGLIVSTACLGGEIPQSIINGQLDSAREIARWYQKIFGDDFY 174 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR ++V++A + L+ATN++ +L+++D EAHD L+ + +V+ Sbjct: 175 LEIQDHGSLEDRTVNVEIVRIAEELGIELIATNDAHYLTKDDVEAHDALLCILTGKLVTD 234 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R T Y+K+ EM +F D A+ NT ++A + + +P F Sbjct: 235 EKRLRYTGTEYIKSEEEMGLLFRDHLDRDIACNAILNTKKVADKVGEYALLEDHQMPHFP 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 L + GL +RL K Y +RL++EL VI M F Y Sbjct: 295 LPS----NHTPITYLTKISQQGLSLRLKLSN--KDKDDSTYHKRLNYELKVINEMGFPTY 348 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+V D+I++A++ I VGPGRGS AGS+ AY L IT+IDP+ L+FERFLNP+R SMP Sbjct: 349 FLVVWDYIRFAREVGISVGPGRGSAAGSLVAYVLGITNIDPISNGLIFERFLNPERKSMP 408 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY + DRL Sbjct: 409 DIDTDFCIERRHEVISYVMQRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGEADRLA 468 Query: 477 KLIPNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 KLIP P L+ IADDS FRE +PS+ + +++++EG + HAAG+ Sbjct: 469 KLIPVVRGKPAKLETMIADDSPVPEFREKYKNNPSIMHWVNMARRIEGTNKTFGVHAAGV 528 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQ 591 VI PL +LVP+ + + +TQ+ M+ IE GL+K DFLGLK LT++ K+++ + A Sbjct: 529 VIAASPLDELVPLQLNNDGQI-ITQYFMEDIESMGLLKMDFLGLKNLTMISKTVEIVRAA 587 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G +++ +P D E + +L GIFQLESSGMRQ + ++P C+EDI ++++LYR Sbjct: 588 SGEDLNMDRLPATDTEAFKILEDGDVEGIFQLESSGMRQIVRDLKPSCLEDISSILALYR 647 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+D ++ + NRK+G E I HP ++P+L ET G+++YQEQ+M+IAQ L+GYSL E Sbjct: 648 PGPLDAGLIPKFINRKHGAEAINFTHPSLEPILGETYGIMVYQEQIMRIAQDLAGYSLGE 707 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EM K + FI GA + G+ + +A +F+ + FA+Y FNKSH+AAY Sbjct: 708 ADLLRRAMGKKKTSEMQKHRNLFIKGAKERGVEEPLAKELFDQMVLFAEYCFNKSHSAAY 767 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 ++YQ A++K HYP+ ++AA +T+ +K++++ + +I++ P +N DF Sbjct: 768 GAVTYQAAYLKAHYPIAYMAALLTVNSGTSDKVQRYIANCNDIDIEVTAPDINYSGYDFT 827 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +I + L+A+K +G R I E+ A F SL D C RV ++NRR LESL+ Sbjct: 828 PVKGKILFGLSAVKNLGNGAIRQISESRAHYGQFLSLADMCDRVPIPQINRRGLESLINC 887 Query: 889 GALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------AHEKGTFSDKIT 939 GA+D +R QL+ +LD +A K+R N+F +K + +T Sbjct: 888 GAMDSLEPTRNRAQLIANLDLTLDWANSRSKDRAIGQGNLFDLLVISAQGKKSIRASLVT 947 Query: 940 LEKFS-----VENSSVRFENEQRVLGFYFSGHPL-DVYKP--ILRKMGIKGYEESVATIR 991 K S + +R E E ++GFY S HPL + +P +L ++ + +E + I Sbjct: 948 APKSSPVLDYLPAEKLRLEKE--LVGFYLSDHPLKQLAQPAKLLPQISLSILQEQI-DID 1004 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + L ++ +K TRKG + + + EA FP Sbjct: 1005 KAKVSLVVILPEIHEKITRKGDLMAVLQLEDLTGCCEAVIFP 1046 >gi|289450822|ref|YP_003474944.1| DNA polymerase III subunit alpha [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185369|gb|ADC91794.1| DNA polymerase III, alpha subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1325 Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust. Identities = 388/1065 (36%), Positives = 589/1065 (55%), Gaps = 66/1065 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL GA ++ + +IA A AITD ++ ALEF Q I+PI Sbjct: 4 FVHLHMHTEYSLLSGANRISELPRRIAELGMSACAITDHGVMYGALEFYQACRKENIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSV 129 IGC++ + + N ++ G T ++LL G + L +LV+ Y GK V Sbjct: 64 IGCEVYVAL--NGRLAKDGVADRRTA-HLILLAENNCGLRNLNKLVTLSYTEGFYGKPRV 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPID----RAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 L L EGLI L+G G I R F + ++A + ++ +FG + Sbjct: 121 DHELLALYH---EGLIALSGCIEGEIPLALRRGDFAGACELARQ----YQDIFGSENFFL 173 Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + G S ++++A +P VATN+ ++ + D AH++L+ + ++ + Sbjct: 174 EMQATGLPEQNMVNSGLIRIAKKLGIPPVATNDCHYMQQTDATAHEILLCIKTGKKLNDE 233 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE--C 300 RPR+ D Y+K+ SEM + F DLPEAL NTV IA RC + LP+F + E Sbjct: 234 HRPRIGSDQLYIKSPSEMAAAFPDLPEALANTVRIAERCKAEFEFGVLHLPKFKQPEEFS 293 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D + L K AGLE RLAQ A A + Y +RL +EL+VI M ++ Y+LIV Sbjct: 294 DSVAY-----LTTKCRAGLERRLAQAAFAP---RETYEERLKYELSVINSMGYTDYYLIV 345 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +AK+N I VGPGRGSGAGS+ A+ L IT+IDPLR++L+FERFLN +R+SMPDFDI Sbjct: 346 WDFIDYAKRNGIFVGPGRGSGAGSLAAFCLGITNIDPLRYNLIFERFLNAERVSMPDFDI 405 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC +RR EVI YV KYG ERV Q+ITFG++ AKA +RDV R L P + D+L K+IP Sbjct: 406 DFCFERRQEVIDYVYRKYGTERVCQVITFGTMAAKAVVRDVARVLDYPLPETDKLAKMIP 465 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + +A+ ++ + DP V +L++ +Q LEGL RHASTHAAG++I P+ Sbjct: 466 GVLGMTLK-KALNINADLKMLYEKDPQVRQLIDYAQILEGLPRHASTHAAGVIICGEPVV 524 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599 P+ ++ + V Q+ +IE GL+KFDFLGL+TLT+L+ + + G ++D Sbjct: 525 NYAPLAKN--DEALVVQYTKNYIESIGLLKFDFLGLRTLTVLRDAAAAIKVNYGREIDFD 582 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 + D + +++L T G+FQLESSGM ++ ++P +EDIIA +SLYRPGP++ I Sbjct: 583 QLDLADEKVFNMLGRGETDGVFQLESSGMTSFIKELRPTSLEDIIAGISLYRPGPMEQIP 642 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y ++ I HPL+ P+L+ T G I+YQEQVMQI + L+G+S+ AD++RRAM K Sbjct: 643 RYVAARHNPALISYDHPLLRPILQVTYGCIVYQEQVMQIVRDLAGFSMGMADIVRRAMAK 702 Query: 720 KIKEEMDKQKERF-----------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 K +E+ + F + G NG+ + + IF + FA Y FNK HAA+ Sbjct: 703 KKPKELATYEGLFLFGGHDFKGNKVPGCIANGVEENVGRKIFNEVLAFAGYAFNKPHAAS 762 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++Y TAW++ +YP EF+AA + + ++ K + Q RQ I+++P +VN V F Sbjct: 763 YAIVAYYTAWLRLYYPTEFMAAILNSFIGDLSKAAHYVQACRQLGIEVLPLNVNYSQVKF 822 Query: 829 KV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 G N+I ++L AIK VG R ++ E A+ F DF R + LNR++ ESL+ Sbjct: 823 ATEGKNKIRFALGAIKNVGFGAIREVVAEREANGLFKDPGDFWRRTANLSLNRKMQESLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---- 942 AGALDCF R +LL + + Y V + F+ G + I++ + Sbjct: 883 RAGALDCFNIDRARLLTA---VVTYLNTVSAGSGSCLAGQFSLFDGPEGESISVAEPVYL 939 Query: 943 -FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----------- 990 +S + EQ ++G Y +GHPL Y+ + + + ++ Sbjct: 940 PVKAFSSLEKLMMEQELIGLYLTGHPLADYRAQVAAFSVADSSWLLPSVDEQGQVIDERR 999 Query: 991 --RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G++++ A V+S ++ TR+ +++ + + +E FP Sbjct: 1000 AADGDSVKFMAFVLSVTERITRQSTKMARIVAEDFISRFEVVAFP 1044 >gi|218288798|ref|ZP_03493061.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] gi|218241156|gb|EED08332.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] Length = 992 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 364/897 (40%), Positives = 538/897 (59%), Gaps = 46/897 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+++S E L + +I+ A + PA+AITDTN ++ AL F + A A GI PI Sbjct: 3 FVHLHVHTAFSFRESLLRVGDIIRAAKACEMPAVAITDTNAMYGALSFYRLARAEGIAPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 IG Q+ + + + + TV V+L +GY+RL L +R + K+ V Sbjct: 63 IGMQVSLACDEEDAVPGRAAESLDTV---VVLAMGIDGYRRLTRLATRA----RWKRPVP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF---NSSQVAEKRLLTFKKLF-GDRLYVN 185 + L L E ++ L++L GG P R F F ++ AE+RLL +L+V Sbjct: 116 HVTLRELAE-SSDRLVVLCGG---PESRLFDFLARGEAEAAERRLLQVAGAVPAGQLFVE 171 Query: 186 LQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H G R RE ++QLA ++PLVAT++ +L+ ED H +A + + Sbjct: 172 VQDH-GLRREREGLPGLIQLAKRWDVPLVATHDVRYLAREDASWHRAYAQLARADAAERF 230 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---C 300 T + + ++EM F++LP+AL T EIA C+ L +H +PR+ K+ Sbjct: 231 ----ATDEFHFATKAEMADRFANLPDALRRTAEIAEMCALDLPLHQVRMPRYATKDGRPA 286 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D++ +E + L + + + L+VI RM ++ YFL+V Sbjct: 287 DEVLREAARAGAARRYGALSPEVEERLERE--------------LDVICRMGYADYFLVV 332 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI+ A + I GPGRGS AGS+ AYAL ITD+DP+R LLFERFLNP R+S+PD D Sbjct: 333 ADFIRHAHQQGISTGPGRGSAAGSLVAYALRITDVDPIRHKLLFERFLNPARVSLPDIDT 392 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF +RR EVIRYV KYG +RVAQI TFG+LQA+AALRD GR + VDRL KL+P Sbjct: 393 DFEFERRGEVIRYVIEKYGRDRVAQIGTFGTLQARAALRDAGRMTGADPALVDRLAKLVP 452 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 H A + + FRE P RL E ++++E L H S HAAG++I P++ Sbjct: 453 G-VVHASLDGAYQESAAFRELVDGSPDARRLFEAAKRIEDLPHHTSIHAAGVIISPEPIA 511 Query: 541 QLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 +P+ D+ +D PVT + M+ +E G +K DFLGLKTLTL+ + LD + +R GV +D Sbjct: 512 DWIPL--DLAADDTPVTAYPMEDVEALGFVKMDFLGLKTLTLIDRCLDSIRKRTGVSIDW 569 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + D TY LLT T G+FQLES+GMR+ L ++P ++D+IA++SL RPGP++NI Sbjct: 570 RQVNEGDPATYALLTRADTNGVFQLESAGMRRVLRELRPTSLDDVIAVISLNRPGPMENI 629 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + + K+G+ + HP ++P+L +T GVI+YQEQ+MQIA ++G+SL+EAD+LRRA+ Sbjct: 630 PAFCDAKHGRRPVTYPHPDLEPILADTYGVIVYQEQIMQIASQMAGFSLAEADLLRRAVS 689 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK +E +D+++ RF+ G + G S+ A ++EL+ +FADYGFN+SHAAAYAV++++TA+ Sbjct: 690 KKKREILDEERSRFVDGCVRRGYSEETAREVYELIVRFADYGFNRSHAAAYAVLAFRTAY 749 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837 ++ H+ +FLAA +TL M +KI+ + QDAR+ I + PPSV + V D + Sbjct: 750 LRAHFLPDFLAALLTLSMGAPDKIRLYEQDARRHGIAVRPPSVLRSERGYTVEEDGSLRA 809 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 L +I+ VG HI+ ++KPF SL DF R++ + +NR+ L+SL AGALD F Sbjct: 810 GLISIRNVGEAAVDHILSLRSEKPFASLVDFLRRIEPRIVNRKALDSLFAAGALDEF 866 >gi|239626635|ref|ZP_04669666.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516781|gb|EEQ56647.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1161 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 388/1051 (36%), Positives = 587/1051 (55%), Gaps = 47/1051 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + + + ++A+TD ++ ++F + A AGI+P Sbjct: 2 AFTHLHVHTEYSLLDGSCKIKELTARAKELGMDSMAVTDHGVMYGVIDFYKAAKEAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + N + + + +VLL +GY+ L+++VS+ ++ D Sbjct: 62 ILGCEVYV--APNSRFDRETVSGEDRYYHLVLLAENNQGYENLMKIVSKGFV-DGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L + +G+I L+ +G + R + A + + +FG D ++ LQ Sbjct: 119 RVDYEVLAKY-HQGVIALSACLAGEVQRYLTRGMYEEAVRAAGRYVDIFGKDNFFLELQD 177 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ +Q +++++ L LVATN+ + ED +AHD+L+ + V +DR R Sbjct: 178 HGLPDQKLVNQGLMRMSRETGLELVATNDIHYTFAEDEKAHDILLCIQTGKKVEDEDRMR 237 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y K+ EM ++F P+ALENT +IA RC+ ++ LPR+ E D Sbjct: 238 YEGGQYYCKSEEEMKALFPYAPQALENTHKIAGRCNVEIEFGVTKLPRYEVPEGFD---- 293 Query: 307 EENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L + G + R + G ++ RLD+EL+ I M + YFLIV DFI Sbjct: 294 SWSYLNHLCREGFKTRYPEDDGTLS---------SRLDYELDTIRTMGYVDYFLIVWDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A+ I VGPGRGS AGSV +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC Sbjct: 345 NYARSQGIMVGPGRGSAAGSVVSYTLGITNIDPVRYNLLFERFLNPERVSMPDIDIDFCY 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV KYG ++V QI+TFG+L AK +RDVGR L +PYS D + K+IPND Sbjct: 405 ERRQEVIDYVVRKYGKDQVVQIVTFGTLAAKGVVRDVGRVLGLPYSMCDTIAKMIPNDLG 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ + ++A D V L+++S++LEGL RH S HAAG+VIG R + + VP Sbjct: 465 MTLD-KALVMNPDLKKAYNEDQQVRNLIDMSKRLEGLPRHTSMHAAGVVIGSRSIDEFVP 523 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLIP 602 + R TQF M IE+ GL+K DFLGL+TLT++Q ++ LA++ G+ +D+ I Sbjct: 524 LSR-ASDGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVR-LAEKDYGISIDVDHID 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 FDD + + T T G+FQLES+GM+ ++ ++ + +EDIIA +SLYRPGP+D I Y Sbjct: 582 FDDKQVLESIGTGRTEGVFQLESAGMKSFMKELKAENLEDIIAGISLYRPGPMDFIPRYL 641 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN KE I P ++ +L T G I+YQEQVMQI + L+GY++ +D++RRAM KK Sbjct: 642 KGKNDKESITYECPQLEHILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKT 701 Query: 723 EEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 M+K++ F + G KNGI + A +I++ + FA Y FNKSHAAAYAV+SY Sbjct: 702 SVMEKERHNFVYGNEEEGVKGCVKNGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSY 761 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDN 833 QTA++K +YP EF+AA MT MDNV K ++ R+ I ++PP +N F V Sbjct: 762 QTAYLKYYYPREFMAALMTSVMDNVGKFSEYILTCRRMMGIPVLPPDINEGESGFSVSGE 821 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L+AIK VG I+ E PF S+EDF R+ K++N+R LE+ + +GALD Sbjct: 822 AIRYGLSAIKSVGKPVVDVILAERGKGGPFRSMEDFVGRMSMKEVNKRTLENFIKSGALD 881 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSV 950 +R Q + + + K+ ++F A E+ +IT + Sbjct: 882 TLPGTRRQKMAVAPTMLEEKARERKSMFEGQLSLFDIAGEEARNEFQITFPDVGEYSKEE 941 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGNNIRLAAMVV 1002 E+ +LG Y SGHPLD Y+ R+ + E G+ + + MV Sbjct: 942 LLAFEKEILGVYISGHPLDDYEEAWRRNITATSADFMVDEETEKAGVQDGSRVVIGGMVA 1001 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K TR + ++T + E FP Sbjct: 1002 GKTVKTTRTNQLMAFITLEDLMGSVEVIVFP 1032 >gi|302385506|ref|YP_003821328.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1] gi|302196134|gb|ADL03705.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1] Length = 1160 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 380/1055 (36%), Positives = 586/1055 (55%), Gaps = 56/1055 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + ++ + ++AITD ++ ++F + A GI+P Sbjct: 2 AFTHLHVHTEYSLLDGSCKIKELVARAKELGMDSMAITDHGVMYGVIDFYRAAREVGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + G +VLL +GYQ L+++VS+ ++ D Sbjct: 62 IIGCEVYVTSGSRFDRETAGGED--RYYHLVLLAENNQGYQNLMKIVSKGFV-DGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+E +EG+I L+ +G + R + + L ++++FG + ++ LQ Sbjct: 119 RVDYEVLREY-SEGIIALSACLAGEVQRLVSRGLYEKGMEAALRYQEIFGKENFFLELQD 177 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + +Q ++++++ + LVATN+ + ED HD+L+ + V+ ++R R Sbjct: 178 HGIPAQNTVNQGLLRMSHETGIQLVATNDIHYTYAEDATPHDILLCIQTGKKVADENRMR 237 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y K+ EM ++FS EA++NT IA RC+ ++ LP++ D + Sbjct: 238 YEGGQYYCKSEDEMRTLFSYAGEAIDNTHRIAERCNVEIEFGVTKLPKY-----DVPEGY 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFI 364 + NK L + Y D ++RLD+EL+VI M + YFLIV DFI Sbjct: 293 DSWSYLNK--------LCLDGFHRHYPLDDGTLKERLDYELDVIHSMGYVDYFLIVWDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A+ +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD D+DFC Sbjct: 345 HYARSQDIIVGPGRGSAAGSIVSYCLGITNIDPIRYNLLFERFLNPERISMPDIDVDFCF 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV KYG ++V QI+TFG+L AK +RDVGR L M Y++ D + K+IP D Sbjct: 405 ERRQEVIDYVVQKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDMSYARCDSIAKMIPGDLG 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ R A DP V L+++S +LEGL RH S HAAG+VI + + VP Sbjct: 465 MTLE-KALRQSPDLRNAYEGDPEVKYLIDMSMRLEGLPRHTSMHAAGVVISRTSVDEYVP 523 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + R + TQF M +E+ GL+K DFLGL+TLT++Q ++ + + R + +D+ I + Sbjct: 524 LSRAADGTI-TTQFPMTTLEELGLLKMDFLGLRTLTVIQNAVKAIEKNRNLSLDMDRIDY 582 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D + T G+FQLESSGM+ ++ ++P+ +EDIIA +SLYRPGP+D I Y Sbjct: 583 NDKAVLDSIGTGRDDGVFQLESSGMKSFMKELKPESLEDIIAGISLYRPGPMDFIPKYLK 642 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 KN + I ++P+L T G I+YQEQVMQI + L+GY++ +D++RRAM KK Sbjct: 643 GKNDRSSITYECKQLEPILNPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTY 702 Query: 724 EMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 M+K+++ F ++G NGI + IA I++ + FA Y FNKSHAAAYAV+SYQ Sbjct: 703 VMEKERQNFVYGNPEEEVTGCISNGIDEKIANQIYDEMIDFAKYAFNKSHAAAYAVVSYQ 762 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K +YP EF+AA +T MDNV K+ ++ RQ I I+PP +N F V I Sbjct: 763 TAFLKYYYPEEFMAALLTSVMDNVSKVSEYILSCRQMGIPILPPDINEGESGFSVSGRSI 822 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y L+AIK VG + I+ E + F +EDF R+ +K++N+R LE+ + +GALD Sbjct: 823 RYGLSAIKSVGKSVVELIVAEREQNGLFHDMEDFIDRMSNKEVNKRTLENFIKSGALDTL 882 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDKITLEKFSVE 946 +R Q L + + + KN +F H + TF D + +F E Sbjct: 883 PGTRKQKLLTAPELLEQRSKERKNTMEGQMTLFDIAGEEEKTHFQVTFPD---VGEFLKE 939 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLA 998 + + FE E LG Y SGHP++ Y+ R E V G+ + + Sbjct: 940 D-LLAFEKE--TLGIYLSGHPMEAYETTWRNHITATTIEFVVDEETGKAGVPDGSYVTVG 996 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ K K TR + ++T + A E FP Sbjct: 997 GMITGKTVKTTRNNKMMAFITLEDLAGAVEVIVFP 1031 >gi|291544638|emb|CBL17747.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus sp. 18P13] Length = 1161 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 374/1043 (35%), Positives = 591/1043 (56%), Gaps = 39/1043 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL VH+ YSLL+GA + ++ +I Q A+AITD ++ A+EF Q A AGI+ Sbjct: 2 PDFVHLHVHTEYSLLDGACRIQQLIQRIKELGQTAVAITDHGCMYGAVEFWQAAKEAGIK 61 Query: 69 PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGC++ + + + K+ +P+ +VLL GYQ LI+LVS Y+ + Sbjct: 62 PIIGCEVYVAPRSRHDKVHRLDTSPY----HLVLLCRNQTGYQNLIKLVSLGYI-EGFYN 116 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ L L++ EGLI L+ +G I R A++ L ++++FG D Y+ + Sbjct: 117 KPRVDLELLEQY-HEGLICLSACLAGEIPRRLVNGDYAGAKEAALRYRQIFGADSYYLEV 175 Query: 187 QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQK 243 Q H G + Q+ +L+ +PLVATN++ +++ ED VL+ + + TV Sbjct: 176 QDH-GIREQKTILPQLYRLSRETGIPLVATNDAHYITREDASLQHVLLCIQTNKTVEDPT 234 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 T + Y+K+ +EM +FS +P+A+ NTV IA +C+ LP F D Sbjct: 235 GMGFETDEFYVKSGAEMAELFSAVPDAISNTVRIAEQCNVEFTFGQLKLPAFQMDGVTDT 294 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ R GL R + A + R+R+ +EL VI +M + YFLIV DF Sbjct: 295 TAFFQHLCRE----GLHRRYGEDP------APEIRERMQYELRVIQQMGYVDYFLIVWDF 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A++ +PVGPGRGSGAGS+ AY + IT IDP+R+ LLFERFLNP+R+SMPDFDIDFC Sbjct: 345 IRYARQIGVPVGPGRGSGAGSLCAYCIGITGIDPMRYHLLFERFLNPERVSMPDFDIDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + R VI YV KYG +RVAQII F +++A+AA+RD GRA+ +PY DR+ KLIP + Sbjct: 405 IEGRQRVIDYVIEKYGSDRVAQIIAFDTMKARAAVRDTGRAMALPYGLCDRVAKLIPGEL 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ A+ E D V +LL+++Q+LEG+ RHA+THAAG+VI P+S+ V Sbjct: 465 NMTIA-GAMKVSKELTELYDTDSRVHKLLDMAQRLEGMPRHATTHAAGVVIASAPVSEFV 523 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+ ++ S VTQ+ M +E+ GL+K DFLGL+ LT+++ + + Q + IP Sbjct: 524 PLQKNEESI--VTQYPMTTLEQLGLLKMDFLGLRNLTVIRDACRAIQQLEPDFRIDQIPL 581 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD Y +++ T G+FQ ES+GM++ L ++P C+ED+IA++SLYRPGP+++I Y Sbjct: 582 DDPAVYRMMSQGKTGGVFQFESAGMQRVLTKLEPTCMEDLIAVISLYRPGPMESIPRYIR 641 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 ++ E+I HPL+ P+L+ T G ++YQEQVM+I + L+GYS AD++RRAM KK + Sbjct: 642 NRHAPEQITYAHPLLKPILQVTYGCMVYQEQVMEICRSLAGYSYGRADLVRRAMAKKKHK 701 Query: 724 EMDKQKERFI------------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 M+ +++ F+ GA NG+ + A IF+ + FA Y FNKSHAAAYA Sbjct: 702 VMEAERQTFLWGSRESDGTVSCPGAVANGVPEATANEIFDQMTSFASYAFNKSHAAAYAY 761 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++YQTA++K HY +++AA MT + N K+ ++ ++ + + P VN + F VG Sbjct: 762 LAYQTAYLKCHYFPQYMAALMTSVLSNTPKLMEYIALCEEYGMAVCRPDVNVSDMGFTVG 821 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I++ L A+KG+G +++ + + S DFC R+ + +R +++L+ GA Sbjct: 822 SKGIHFGLLAVKGLGKGVISQVIQERQEHGLYHSFLDFCERMVQLDVGKRTVDNLIRCGA 881 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 LD G++R ++L + I + ++F + + + + K + Sbjct: 882 LDGLGHNRREMLMCYEQIMDAQAGSSRTLIQGQMDLFG-QGSAMPESVPIPKMEEFPPNQ 940 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 E+ + G Y SGHPL + + + + +E G I + M+ S + R Sbjct: 941 LLRMEKELTGMYLSGHPLGHLQWCRKLLRLPELKELQDEKDGTGISVLCMLQSVKPHVAR 1000 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 G ++ ++T + + EA FP Sbjct: 1001 NGEKMCFLTLEDLSGTMEAVVFP 1023 >gi|183222285|ref|YP_001840281.1| DNA polymerase III subunit alpha [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912335|ref|YP_001963890.1| DNA-directed DNA polymerase subunit alpha [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777011|gb|ABZ95312.1| DNA-directed DNA polymerase, alpha subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780707|gb|ABZ99005.1| DNA polymerase III alpha subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1173 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 361/986 (36%), Positives = 567/986 (57%), Gaps = 38/986 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H++YS+L+GA+ +++++ ++ ++AITD N++ A+EF ++A ++PI Sbjct: 12 FAHLHLHTTYSMLDGAIRISDLMKRVKELGMSSVAITDHGNMYGAIEFYKEAVKHEVKPI 71 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ + + + T + I+LL GYQ +I+L SR + + + R Sbjct: 72 IGCEFYVTPSRSAE-TELDEIADGGAYHIILLCKNEVGYQNIIKLASRSFT-EGFYRKPR 129 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189 I L E +EGL+ LT +G ++R A ++F + Y+ +Q H Sbjct: 130 IDYDLL-ERHSEGLVCLTACLAGEVNRKILEGKEDKAYALAGRLHEIFRKEDFYLEIQDH 188 Query: 190 RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ ++ V+ + +PLV TN+S FL+++D EA D+L+ + + + R Sbjct: 189 GIPEQKTVAEAVIGFSKRTGIPLVLTNDSHFLTKDDREAQDILLRIGMRKNIDDEMRFGF 248 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + Y+K+ EM ++F + +A NT+ I +CS Q P+LP F D E Sbjct: 249 NQNFYVKSPEEMKTLFPNHLDAYYNTLAIRDKCSLNFQFGNPLLPPFEVPPGFDTDSYLE 308 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 +L I + Y ++R +FE+ I M F+GYFLIV D+I + Sbjct: 309 -------------KLVWEGIQEKYKEITPIVKERTEFEMQTIRNMHFAGYFLIVQDYINF 355 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++ IPVGPGRGS AGS+ AYAL IT++DP+R++LLFERFLNPDR MPD D DFC +R Sbjct: 356 ARRTGIPVGPGRGSAAGSIIAYALGITNVDPIRYNLLFERFLNPDRKDMPDIDTDFCVER 415 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI Y++++YG RV QIITFGSL AKAA++DV R +P+S+V+ + KL P Sbjct: 416 REEVINYIKHRYGENRVGQIITFGSLAAKAAIKDVARVFNVPFSEVNEMSKLFPKKLG-- 473 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +++Q + S+ R+ ++ I+QKLEG YR HAAG+VI L ++VP+ Sbjct: 474 ITIQEAVETSKDLRDIAEKSELNKKVFSIAQKLEGNYRQVGRHAAGVVIAPTALEEIVPL 533 Query: 546 Y------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 RD RS VTQ++ E+ GLIK D LGLK LT + + + +R G+ +DL Sbjct: 534 STVSEPGRDGRS--IVTQYDKNMSEQVGLIKMDILGLKNLTTIHHATKLIEKRHGILIDL 591 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLE-SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 IP DD T+ LL LGIFQL+ SSG+R Q E+I AL++LYRPGP+ + Sbjct: 592 DKIPLDDPATFSLLRKANVLGIFQLDSSSGIRDLFAKAQVQKFEEIAALLALYRPGPMGS 651 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 ++ Y +RKNGK+K+V H + +L ET GVI+YQEQVM I++++ G+S+ ++DVLR+ Sbjct: 652 GMLDDYLDRKNGKKKVVFPHESLAEVLGETYGVIVYQEQVMGISRIMGGFSVGDSDVLRK 711 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AM KK K ++ KE+F+ GA + I++ +A +FE L KF +YGFNKSH+ AYA ++YQ Sbjct: 712 AMAKKDKSKLPALKEKFVKGAIEKKINEKLATELFEQLEKFGEYGFNKSHSVAYAFVTYQ 771 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TA++K +Y +E+L A ++ + + + K+ +A++ I+I+ P V + F++ D+ Sbjct: 772 TAFLKANYSIEYLTALLSGDHSKITDVVKYINNAKEMGIRILGPDVKESGISFEITDDTT 831 Query: 835 IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + + L++IKGVG A++I+ + + L DF ++D++ N++VLESL GA D Sbjct: 832 VRFGLSSIKGVGELAAQNIIHNRNELGGYKQLSDFTKKLDTRLANKKVLESLAQGGAFDS 891 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE-NSSVRF 952 FGYSR + +S D I YA + ++F G + + L K +E N Sbjct: 892 FGYSRKTISESTDIILNYANKKQAEEKEGQFSLFGGVNGGSEENLNLPKDGIEWNDDELL 951 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKM 978 E+ G Y SGHPLD + L+ + Sbjct: 952 RREKETTGLYLSGHPLDKFTEQLKSL 977 >gi|322378547|ref|ZP_08052994.1| DNA polymerase III subunit alpha [Helicobacter suis HS1] gi|321149024|gb|EFX43477.1| DNA polymerase III subunit alpha [Helicobacter suis HS1] Length = 1212 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 385/1018 (37%), Positives = 590/1018 (57%), Gaps = 77/1018 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL +H+ YSLL+GA + + KI +++++D N+F A++F GI+P Sbjct: 18 NFTHLHLHTEYSLLDGANKIKVLAKKIKELGMESVSMSDHGNMFGAIDFYTCMKKEGIKP 77 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + I NL Q K F + L EGY L+ L S+ +L +G Sbjct: 78 IIGMEAYIHNSTNLG-DKQSKQRF----HLCLYAKDLEGYHNLMYLSSQAFL--EGFYYF 130 Query: 130 -RICLSWLQEIGTEGLIMLTGGSSGPIDRAF--------------FFNSSQVAEKRLLTF 174 RI L+E +GLI + G I+ + + +VAE+ + Sbjct: 131 PRINKKLLKE-RCKGLICSSACLQGEINWHLNTLSEKNKKYGAKGYDEAKRVAEE----Y 185 Query: 175 KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 + +FG+ Y+ + RH ++ + E Q+++L+ + L+ATN++ + ++ED A ++ M Sbjct: 186 QSIFGEDFYMEIMRHGIANQLFIEDQILKLSLETGIKLIATNDTHYTNQEDASAQEIAMC 245 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----H 288 VA ++ R R + + Y+K+ ++M +F+D+PEALENT EIA++C + + + Sbjct: 246 VAMGKTLNDPTRLRHSVHEFYIKSPAQMAKLFADIPEALENTQEIAQKCQLEIDLKDESN 305 Query: 289 APILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 P PRF E DI KE+ +KA GL+ RL I + HA+ Y +RL+ Sbjct: 306 PPTPPRFKFTQEYALSEGLDI-KEDAPYFAHKAREGLKKRLEMVDIKE--HAR-YEERLE 361 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +E+ VI M+F+GY LIV DF+++A++NNIPVGPGRGS AGS+ A+ L ITDIDPL++ L Sbjct: 362 YEIKVITDMRFAGYMLIVWDFVRYARENNIPVGPGRGSAAGSLVAFCLQITDIDPLKYDL 421 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E++ Y+ KYG VAQ+ITF + AK +RDV Sbjct: 422 LFERFLNPERVSMPDIDTDFCQRRRGEMLDYMIAKYGKYNVAQVITFNKMLAKGVIRDVA 481 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ------ 516 R L MPY + D + KLIPN ++LQ EA +P + LL+ S Sbjct: 482 RVLDMPYKEADEMAKLIPNRLG--ITLQ---------EAYDLEPKIQTLLQTSTLAKEVW 530 Query: 517 ----KLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 +LE L R A HAA +V+ +R L P+Y R+ VTQ++MK++E LIKF Sbjct: 531 DFSLRLENLNRSAGKHAAALVVDSERELWYKTPLYTSERTGGIVTQYSMKYLEAIDLIKF 590 Query: 572 DFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGLKTLT++ +L+ + + K+D + DD + Y + T+GIFQ+E SGM Q Sbjct: 591 DFLGLKTLTVIHDALNIIKKYSHEKIDFLRVDMDDPKVYATIQEGNTVGIFQIE-SGMFQ 649 Query: 631 AL-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687 L + ++P EDIIA+++L RPGP+++ +V + NRK+G I + ++P+L+ T G Sbjct: 650 TLNKRLRPSRFEDIIAIIALGRPGPMESGMVDDFVNRKHGSAPITYMFDALEPILRPTYG 709 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 IIYQEQVMQI Q ++G+SL EAD++RRAMGKK + M + +F+ GA K G A Sbjct: 710 TIIYQEQVMQIVQTIAGFSLGEADLIRRAMGKKDAQIMADNRAKFVEGAEKKGFDCNKAG 769 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +F+L+ KFA YGFNKSH+AAYA++++QTA++KTHY F+AA ++ E +++ + + + Sbjct: 770 ELFDLIVKFAGYGFNKSHSAAYAMLTFQTAYLKTHYKHAFMAAMLSSECRHIDSVAYYVE 829 Query: 808 DARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPF 862 +A I+I P VN V F+V G+ I + L AIKG G ++E F Sbjct: 830 EANSMGIEIKRPHVNVSDVQFRVQDENGEKVIIFGLEAIKGAGEGPLGMLVELREKYGKF 889 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 LED S++D K ++R+LE L+ +G+LD GY+R +L++LD I + + +K+ Sbjct: 890 KDLEDLISKIDFSKFSKRILEPLIKSGSLDNLGYNRKTMLENLDLICEEGRRKDKSNAQM 949 Query: 923 HENIFAHEKGTFSDK--ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +FA+ +K +TL+ + + S + E +G YFSGHPLD +K ++ + Sbjct: 950 SGGLFANLSTEDQEKAHLTLKIYDEYDDSTLLDFEYECMGLYFSGHPLDAFKDQIKAL 1007 >gi|322379743|ref|ZP_08054053.1| DNA polymerase III subunit alpha [Helicobacter suis HS5] gi|321147814|gb|EFX42404.1| DNA polymerase III subunit alpha [Helicobacter suis HS5] Length = 1212 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 385/1017 (37%), Positives = 589/1017 (57%), Gaps = 77/1017 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA + + KI +++++D N+F A++F GI+PI Sbjct: 19 FTHLHLHTEYSLLDGANKIKVLAKKIKELGMESVSMSDHGNMFGAIDFYTCMKKEGIKPI 78 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 IG + I NL Q K F + L EGY L+ L S+ +L +G Sbjct: 79 IGMEAYIHNSTNLG-DKQSKQRF----HLCLYAKDLEGYHNLMYLSSQAFL--EGFYYFP 131 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAF--------------FFNSSQVAEKRLLTFK 175 RI L+E +GLI + G I+ + + +VAE+ ++ Sbjct: 132 RINKKLLKE-RCKGLICSSACLQGEINWHLNTLSEKNKKYGAKGYDEAKRVAEE----YQ 186 Query: 176 KLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FG+ Y+ + RH ++ + E Q+++L+ + L+ATN++ + ++ED A ++ M V Sbjct: 187 SIFGEDFYMEIMRHGIANQLFIEDQILKLSLETGIKLIATNDTHYTNQEDASAQEIAMCV 246 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV----HA 289 A ++ R R + + Y+K+ ++M +F+D+PEALENT EIA++C + + + Sbjct: 247 AMGKTLNDPTRLRHSVHEFYIKSPAQMAKLFADIPEALENTQEIAQKCQLEIDLKDESNP 306 Query: 290 PILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 P PRF E DI KE+ +KA GL+ RL I + HA+ Y +RL++ Sbjct: 307 PTPPRFKFTQEYALSEGLDI-KEDAPYFAHKAREGLKKRLEMVDIKE--HAR-YEERLEY 362 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E+ VI M+F+GY LIV DF+++A++NNIPVGPGRGS AGS+ A+ L ITDIDPL++ LL Sbjct: 363 EIKVITDMRFAGYMLIVWDFVRYARENNIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLL 422 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD D DFCQ RR E++ Y+ KYG VAQ+ITF + AK +RDV R Sbjct: 423 FERFLNPERVSMPDIDTDFCQRRRGEMLDYMIAKYGKYNVAQVITFNKMLAKGVIRDVAR 482 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ------- 516 L MPY + D + KLIPN ++LQ EA +P + LL+ S Sbjct: 483 VLDMPYKEADEMAKLIPNRLG--ITLQ---------EAYDLEPKIQTLLQTSTLAKEVWD 531 Query: 517 ---KLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 +LE L R A HAA +V+ +R L P+Y R+ VTQ++MK++E LIKFD Sbjct: 532 FSLRLENLNRSAGKHAAALVVDSERELWYKTPLYTSERTGGIVTQYSMKYLEAIDLIKFD 591 Query: 573 FLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L+ + + K+D + DD + Y + T+GIFQ+E SGM Q Sbjct: 592 FLGLKTLTVIHDALNIIKKYSHEKIDFLRVDMDDPKVYATIQEGNTVGIFQIE-SGMFQT 650 Query: 632 L-EGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688 L + ++P EDIIA+++L RPGP+++ +V + NRK+G I + ++P+L+ T G Sbjct: 651 LNKRLRPSRFEDIIAIIALGRPGPMESGMVDDFVNRKHGSAPITYMFDALEPILRPTYGT 710 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 IIYQEQVMQI Q ++G+SL EAD++RRAMGKK + M + +F+ GA K G A Sbjct: 711 IIYQEQVMQIVQTIAGFSLGEADLIRRAMGKKDAQIMADNRAKFVEGAEKKGFDCNKAGE 770 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 +F+L+ KFA YGFNKSH+AAYA++++QTA++KTHY F+AA ++ E +++ + + ++ Sbjct: 771 LFDLIVKFAGYGFNKSHSAAYAMLTFQTAYLKTHYKHAFMAAMLSSECRHIDSVAYYVEE 830 Query: 809 ARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFD 863 A I+I P VN V F+V G+ I + L AIKG G ++E F Sbjct: 831 ANSMGIEIKRPHVNVSDVQFRVQDQEGERVIIFGLEAIKGAGEGPLGMLVELREKYGKFK 890 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 LED S++D K ++R+LE L+ +G+LD GY+R +L++LD I + + +K+ Sbjct: 891 DLEDLISKIDFSKFSKRILEPLIKSGSLDNLGYNRRTMLENLDLICEEGRRKDKSNAQMS 950 Query: 924 ENIFAHEKGTFSDK--ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +FA+ +K +TL+ + + S + E +G YFSGHPLD +K ++ + Sbjct: 951 GGLFANLSTEDQEKAHLTLKIYDEYDDSTLLDFEYECMGLYFSGHPLDAFKDQIKAL 1007 >gi|288553705|ref|YP_003425640.1| DNA polymerase III subunit alpha [Bacillus pseudofirmus OF4] gi|288544865|gb|ADC48748.1| DNA polymerase III alpha subunit [Bacillus pseudofirmus OF4] Length = 1117 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 381/1041 (36%), Positives = 597/1041 (57%), Gaps = 61/1041 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + +H V+S YSLL + ++ K A+A+TD N+F+A+ F + GI+P Sbjct: 2 NLLHTNVYSEYSLLSSTNRIKELVSKAKETGFTALALTDKGNMFAAVPFYKACLETGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG L+I ++DN + G S+ LL GY+ L+++ + L Q + ++ Sbjct: 62 VIG--LEIPIKDN---EHSG--------SLRLLAKNTTGYKSLLKIST----LLQTEDNL 104 Query: 130 RICLSW--LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK---RLLTFKKLFGDRLYV 184 R L+ L+ + LI++ S P+ + + A++ R +T K + Y+ Sbjct: 105 RAGLAPDDLRSRINDCLIIIPYDS--PMHQLIKAGEVEAAKEWCVRWITRSK--KEDWYI 160 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +L + + + V Q A + L L +N F S+E+YEA+ + A+ + +D Sbjct: 161 DLAGNADRESHHWEAVSQFASRYNLKLCGSNPVRFTSKENYEAYAAVRAIREGKTIHLQD 220 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 YLK++ E+ FS +P AL EI +C+ + + LP + + Sbjct: 221 EGHAERSFYLKSKEELKQSFSPVPAALSGLGEIVEQCNITIDLDRRYLPAY-----PFTK 275 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 E E+ KA +GA + H + R+RL+ EL VI +M F+ YFLIVAD Sbjct: 276 SEPAKEVLKKACL-------EGANKRFNHTITDEVRRRLEKELAVIDQMGFNDYFLIVAD 328 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F+Q A+K N+ GPGRGS AGS+TAY L ITD++PL++ LLFERFLNP+R+S+PD DIDF Sbjct: 329 FMQHARKRNMMTGPGRGSAAGSLTAYVLYITDVNPLKYDLLFERFLNPERISLPDIDIDF 388 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 RRDEVI+YVQ KYG + VAQI TFG+L A+AA+RD G+AL ++++ KLIP+ Sbjct: 389 PDHRRDEVIQYVQEKYGPDHVAQIATFGTLAARAAIRDTGKALSCDSFLIEKVAKLIPST 448 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A+ + ++ R ++LL I++ +EGL RH STHAAG+VI PL++L Sbjct: 449 PGITIK-KAMEQERGLQQIRNDSEDANKLLSIAESIEGLMRHVSTHAAGVVISPVPLTEL 507 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 V + + + + +TQ M +E GL+KFDFLGL+ LTLL++ L + Q G +VD+ I Sbjct: 508 VALQKG-QGPVRLTQATMGIVEDIGLVKFDFLGLRNLTLLERVLSIIEQESGRRVDIHSI 566 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P+DD +TY LL T G+FQLES GMR+ L + P EDI+A+ +LYRPGP+D I VY Sbjct: 567 PWDDVKTYELLANGDTTGVFQLESQGMRRVLRSLMPTEFEDIVAVNALYRPGPMDYIQVY 626 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N K+ K I IH + P+L +T GVI+YQEQ+MQIA ++G+SL+ AD+LRRA+ KK Sbjct: 627 INGKHKKAPINDIHEELTPILGKTYGVIVYQEQIMQIAVKMAGFSLARADLLRRAISKKN 686 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K +++K + F+ GA + G ++ IA +F+L+ +FA+YGFN+SHA AY++ISYQ A++K Sbjct: 687 KADLEKSRGDFLKGAKEKGYNEDIANKVFQLIERFANYGFNRSHAVAYSMISYQLAYLKA 746 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--NRIYYSL 839 H+P F A ++ + EK+ + Q+ ++ I IMPPS++ + F + D + + + L Sbjct: 747 HFPTAFYTALLSSVWNTPEKLTELLQETKKRKIDIMPPSISKSGLLFTLEDHGHTVRFGL 806 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 + VG A+HI++ + + P+ L D+C RV+ + +NRR E+L+ AGA+D +G R Sbjct: 807 LPVSHVGVQAAKHIIDTAREAPYKDLFDYCVRVNQRIVNRRATENLIKAGAMDEWGEDRA 866 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFS-VENSSV--RFENE 955 LL +LD +A+ V F E G F+ I ++ V+ S+ + E Sbjct: 867 TLLYNLDQAYSFAEKVLS---------FQDEMAGLFTLDIETPQYEHVDPLSLQEKLSFE 917 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---IRLAAMVVSKQQKKTRKG 1012 Q LG Y SGHP++ +L K + + +G +R+A MV S ++ T+KG Sbjct: 918 QEALGVYVSGHPIEQVSDVLAKYQRVLIADMIQDQKGQERKRLRIAGMVSSLKKITTKKG 977 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + ++ ++ + E FP Sbjct: 978 DPMAFLEAADESGHCEVVVFP 998 >gi|296436078|gb|ADH18252.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/9768] gi|296437006|gb|ADH19176.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/11222] gi|296437939|gb|ADH20100.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/11074] gi|297140439|gb|ADH97197.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/9301] Length = 1237 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 386/1059 (36%), Positives = 584/1059 (55%), Gaps = 68/1059 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+P Sbjct: 2 TWIPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + + K+ ++LL EGY+ L L S Y +G V Sbjct: 62 IIGCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT--EGFYYV 117 Query: 130 -RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q Sbjct: 118 PRIDRDLLSQ-HSKGLICLSACLSGSVAQAAL-ESEEDLEKDLLWYQDLFQEDFFSEVQL 175 Query: 189 HRG----------------YDRYRESQV----VQLAYTHEL--PLVATNNSLFLSEEDYE 226 H+ Y ++ E Q+ LA + L P VATN+ +L+ +D+ Sbjct: 176 HKSSEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWL 235 Query: 227 AHDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276 AH++L+ V ++ + + K + + + Y K+ E+ +F+ PE + NT Sbjct: 236 AHEILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCI 295 Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA--------- 327 +A RC L P ++ + E E + A LE QG Sbjct: 296 VAERCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELL 355 Query: 328 --IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 IAK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSG Sbjct: 356 GHIAKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSG 415 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + Sbjct: 416 AGSVMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKD 475 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501 VAQIITFG+++AK A++DVGR L P ++V+ + K IP+ A S A+ D R+ Sbjct: 476 NVAQIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITS--ALEADPELRQL 533 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 + D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK Sbjct: 534 YVDDAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMK 593 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E G++K DFLGLKTLT + + + ++ G+ + + IP DD T+ LL T+GI Sbjct: 594 PVESVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGI 653 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ+ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P Sbjct: 654 FQMESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEP 713 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NG Sbjct: 714 ILKETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANG 773 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E Sbjct: 774 IDPSIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIE 833 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SAD 859 K+ K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + Sbjct: 834 KVGKLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKN 893 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 P+ SL+DF R D KK+ ++ LE+LV AG D F ++ L L+++ +K Sbjct: 894 GPYKSLQDFVQRADFKKVTKKQLENLVDAGTFDRFEPNKDLALAILNDLYDTFSREKKEA 953 Query: 920 TNKHENIFAHEKGTFSD-KITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILR 976 F+ + KIT+ +V S + + E+ +LG Y + HP+D + +L Sbjct: 954 ATGVLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLP 1013 Query: 977 KMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKK 1008 + + + G IR + + S +QKK Sbjct: 1014 FLSVVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKK 1052 >gi|225376830|ref|ZP_03754051.1| hypothetical protein ROSEINA2194_02472 [Roseburia inulinivorans DSM 16841] gi|225211326|gb|EEG93680.1| hypothetical protein ROSEINA2194_02472 [Roseburia inulinivorans DSM 16841] Length = 1170 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 384/1070 (35%), Positives = 603/1070 (56%), Gaps = 73/1070 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ +SLL+G+ + + ++ + AITD +F ++F + A AAGI P Sbjct: 2 AFTHLHVHTEFSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYKAAKAAGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + N + + +VLL EGYQ L+++VS+ ++ D Sbjct: 62 ILGCEVYV--APNSRFDREAAHGEDRYYHLVLLAENNEGYQNLMKIVSKGFV-DGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDR----AFFFNSSQVAEKRLLTFKKLFGD-RLYV 184 R+ + LQ+ + G+I L+ +G + R + + +VAEK ++ FG ++ Sbjct: 119 RVDMEVLQQYHS-GIIALSACLAGEVQRYLVKGLYDEAKKVAEK----YENCFGKGNFFL 173 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H ++ Q+V+++ + LVATN+ + ED EAHD+L+ + +S + Sbjct: 174 ELQDHGIPEQQMVNPQLVRMSQETGIELVATNDVHYTYAEDAEAHDILLCIQTGKKLSDE 233 Query: 244 DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R R +Y+K+ EM +FS +A++NT +IA RC ++ LP F E D Sbjct: 234 NRMRYEGGQYYVKSEEEMRKLFSFASQAIDNTQKIADRCHVEIEFGVTKLPHFEVPEGYD 293 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGY--HAQDYRQRLDFELNVIARMKFSGYFLIV 360 NK L + K Y ++ +LD+ELNVI +M + YFLIV Sbjct: 294 SWT-----YLNK--------LCHEGLVKRYPDRHEELLPKLDYELNVIRKMGYVDYFLIV 340 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +A+ + IPVGPGRGS AGS+ +Y IT+IDP++++LLFERFLNP+R++MPD DI Sbjct: 341 WDFINYARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIKYNLLFERFLNPERVTMPDIDI 400 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC +RR EVI YV KYG + V+QI+TFG+L AK +RDVGR + +PYS D + K+IP Sbjct: 401 DFCYERRSEVIDYVVKKYGKDCVSQIVTFGTLAAKGVIRDVGRVMDLPYSFCDTIAKMIP 460 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N+ + +A+ + R +D +V L+++S++LEGL RH S HAAG+VI + + Sbjct: 461 NELNITIE-KALQMNPELRGMYESDENVRTLIDMSKRLEGLPRHTSMHAAGVVISQKAMD 519 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 + VP+ R + TQF M IE+ GL+K DFLGL+TLT+++ + D + + G+K+D++ Sbjct: 520 EYVPLSRASDGTI-TTQFIMTTIEELGLLKMDFLGLRTLTVIKDAADLVYKNHGIKIDVN 578 Query: 600 LIPFDDH-------------ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 I ++DH + + T T G+FQLES+GM+ ++ ++P +ED+IA Sbjct: 579 HIDYNDHTDPDAVLIDYNDKKVLDYIGTGRTEGVFQLESAGMKNFMKELKPQSLEDVIAG 638 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 +SLYRPGP+D I Y KN ++ I ++P+L+ T G I+YQEQVMQI Q L+GY+ Sbjct: 639 ISLYRPGPMDFIPKYIKGKNERDSITYECKELEPILEPTYGCIVYQEQVMQIVQELAGYT 698 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN--------IFELLAKFAD 758 + +AD +RRAM KK + +D +++ F+ G + GI IA + I++ + FA Sbjct: 699 MGQADNIRRAMSKKKQYVIDAERQNFVYGNEEQGIKGCIANDISEQAANKIYDSMVDFAK 758 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 Y FNKSHAAAYAV+SYQTA+ K +YPVEF+AA MT +DN K+ ++ RQ I+++P Sbjct: 759 YAFNKSHAAAYAVVSYQTAYFKYYYPVEFMAALMTSVIDNTRKVSEYIFTCRQMGIKVLP 818 Query: 819 PSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKK 876 P VN V VGDN I Y L AIK +G I+ E + + +L+ F RV ++ Sbjct: 819 PDVNEGEGVFTAVGDN-IRYGLYAIKSIGRPVVDLILQEREENGTYKTLQSFLERVSCRE 877 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKG 932 +N+R +E+L+ AGALD +R Q++ I +K + +F EK Sbjct: 878 VNKRAVENLIKAGALDGLDGNRQQMITVFSTIMDNLASEKKKSMSGQMTLFDLVPEEEKK 937 Query: 933 TFSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-------GIKGYE 984 + ++ LE++S E ++ E+ VLG Y +GHPL+ Y+ RK + E Sbjct: 938 DYEIRLPQLEEYSKE---IKLGFEKEVLGIYLTGHPLEEYEERWRKNISAVTTDFVLDEE 994 Query: 985 ESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ N + + M+ K K T+ + ++T + E FP Sbjct: 995 TNEVKVKDNQKVTVGGMITEKTVKYTKNNKVMAFLTLEDLVGTVEVIVFP 1044 >gi|291561482|emb|CBL40281.1| DNA polymerase III catalytic subunit, DnaE type [butyrate-producing bacterium SS3/4] Length = 1159 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 384/991 (38%), Positives = 569/991 (57%), Gaps = 48/991 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + + + ++AITD ++ ++F + A AAG++P Sbjct: 2 AFTHLHVHTEYSLLDGSSKIGELAARAKELGMDSMAITDHGVMYGVIDFYRAARAAGVKP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIGC++ + + T G+ + +VLL GYQ L+++VS+ ++ D Sbjct: 62 IIGCEVYVSPGSRFDRETVHGEDRYY---HLVLLAENNTGYQNLMKIVSKGFV-DGFYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAF---FFNSSQVAEKRLLTFKKLFGDRLY-V 184 RI ++E EG+I L+ +G + R + ++ A KR L ++FG+ Y + Sbjct: 118 PRIDEEVMREY-HEGIIALSACLAGEVPRYLEKGLYEDAKAAAKRHL---EIFGEGNYFL 173 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H R +++L+ +PLVATN+ +++ ED+EAHD+L+ + VS + Sbjct: 174 ELQDHGIPMQRQVNQGIMRLSKELNIPLVATNDCHYINAEDWEAHDILLCIQTGKKVSDE 233 Query: 244 DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R R +Y+K+ EM +F PEA+ENT +IA RC+ ++ LPRF E D Sbjct: 234 NRMRYEGGQYYVKSEEEMRRLFPYAPEAIENTHKIAERCNVEIEFGVTKLPRFDVPEGYD 293 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIV 360 G L A Y D R RLD+EL I M + YFLIV Sbjct: 294 -------------SWGYLNHLCDEGFAMRYPNDDGTLRARLDYELGTIKSMGYVDYFLIV 340 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +AK + I VGPGRGS AGS+ AY L ITDIDP+R+ LLFERFLNP+R+SMPD D+ Sbjct: 341 WDFINFAKSHGIAVGPGRGSAAGSIVAYCLKITDIDPIRYQLLFERFLNPERVSMPDIDV 400 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC +RR EVI YV KYG ++VAQI+TFG+L A+ +RDVGR + +PYS D++ K++P Sbjct: 401 DFCYERRQEVIDYVVEKYGKDQVAQIVTFGTLAARGVIRDVGRVMDLPYSLCDQVSKMVP 460 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + L A+ + + +D V +L+++S++LEGL RH S HAAG+VI + Sbjct: 461 AELNITLDL-ALRKNPELKALYDSDEQVRKLIDMSKRLEGLPRHTSMHAAGVVISRTSID 519 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 + VP+ R + VTQF M +E+ GL+K DFLGL+TLT++Q ++ + + GV +DL Sbjct: 520 EYVPLSRGADGTI-VTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKMIKKDHGVDLDLE 578 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I +DD + L T G+FQLES G + ++ ++P +EDIIA +SLYRPGP+D I Sbjct: 579 HIDYDDKKVMDSLGTGKNEGVFQLESGGFKTFMKELKPTTLEDIIAGISLYRPGPMDFIP 638 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y KN E I P ++P+LK T G I+YQEQVMQI + L+GY+L +D++RRAM K Sbjct: 639 KYLKGKNDPESITYTCPQLEPILKPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSK 698 Query: 720 KIKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 K M K+++ F+ G + NGI + A I++ + FA Y FNKSHAAAYAV Sbjct: 699 KKAAVMAKERQNFVYGNEEEGVKGCIANGIDEKTANQIYDDMTDFAKYAFNKSHAAAYAV 758 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++YQTA++K +YP EF+AA MT MDN K+ ++ R I I+PP +N F V Sbjct: 759 VAYQTAFLKYYYPKEFMAALMTSVMDNTTKVSEYILACRNMGIPILPPDINEGYSGFSVS 818 Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 N I Y L+AIK VG I+ E + F +L+DF SR+ +K++N+R LES + +GA Sbjct: 819 GNGIRYGLSAIKSVGRAVVDVIIAERESGGLFKNLDDFVSRMSNKEVNKRTLESFIKSGA 878 Query: 891 LDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 LD +R Q L L++ K + V + + + + EK F IT Sbjct: 879 LDTLPGTRKQKLIVSGDLLESKSKEKKTVMEGQMSFFDIAPEEEKDNFH--ITFPDVGEY 936 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + E+ +G Y SGHP++ Y+ + K Sbjct: 937 DKQTLLAFEKETIGIYVSGHPMEEYRELWEK 967 >gi|291550544|emb|CBL26806.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus torques L2-14] Length = 1157 Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust. Identities = 375/1047 (35%), Positives = 593/1047 (56%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ +SLL+G+ + + ++ + AITD ++ ++F ++A GI P Sbjct: 2 SFAHLHVHTEFSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYREAKKQGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + N + + +VLL EGY L ++VS+ ++ + Sbjct: 62 ILGCEVYV--APNSRFDREITGGDDRYYHLVLLAENEEGYANLTKIVSKGFV-EGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L++ +G+I L+ +G + R + A+K L ++++FG+ ++ LQ Sbjct: 119 RVDKELLRKY-HKGIIALSACLAGEVARFLTKGLYEEAKKTALEYQEIFGEGNFFLELQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ Q+ +++ + LVATN+ + ED + HD+L+ + +S ++R R Sbjct: 178 HGIPEQGLVNQQLFKMSEETGIELVATNDIHYTYAEDAKPHDILLCIQTGKKLSDENRMR 237 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM+ +F +ALENT +IA RC ++ LP++ + D Sbjct: 238 YDGGQYYVKSEEEMLRLFPYAKQALENTQKIADRCHVEIEFGVTKLPKY---DVPDGYTS 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E L+ GLE R G +++ ++RL +EL I +M + YFLIV DFI++ Sbjct: 295 WEY-LQKLCYEGLEKRY-------GDPSEELKERLSYELETIHQMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 AKDHGISVGPGRGSAAGSIVSYCLEITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG + VAQI+TFG+L A+ +RDVGR + +PY+ VD + K+IP + Sbjct: 407 RQEVIDYVTRKYGKDCVAQIVTFGTLAARGVIRDVGRVMDLPYAYVDSISKMIPQELGIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + ++ D +V L++++++LEGL RH S HAAG+VI +P+ + VP+ Sbjct: 467 ID-KALKMNPDLKKLYDTDETVTNLIDMAKRLEGLPRHCSMHAAGVVICQKPVDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R + TQF M +E+ GL+K DFLGL+TLT++Q ++ ++ +++++ I ++D Sbjct: 526 RAADGTI-TTQFIMTTLEELGLLKMDFLGLRTLTVIQNAVLLARRKQPELNINQIDYNDQ 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + T T G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y KN Sbjct: 585 KVLDYIGTGKTDGVFQLESAGMKGFMKELKPHNLEDVIAGISLYRPGPMDFIPQYIRGKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I P ++P+L T G I+YQEQVMQI + L+GYSL +D+LRRAM KK M+ Sbjct: 645 DSSSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKAAVME 704 Query: 727 KQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ FI G KNGI + A I++ + FA Y FNKSHAAAYAV+SYQTAW Sbjct: 705 KERKIFIYGDEETGVPGCIKNGIDEQTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAW 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K ++PVE++AA MT +DN K+ ++ RQ NI+I+PP +N +F V I Y Sbjct: 765 LKYYFPVEYMAALMTSVIDNPSKVSEYIYACRQMNIKILPPDINKGEANFSVDGGDIRYG 824 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGY 896 LAAIK +G + I+E + F +LEDF +R+ +K LN+R +E+L+ AGALD G Sbjct: 825 LAAIKSIGRPVIKAIVEDREELGLFQNLEDFITRLSAKNILNKRTIENLIKAGALDTLGG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + I + +KN +F E +I + + Sbjct: 885 TRKQFMSIYVQIVDHVTQEKKNSMVGQMTLFDLVSEDQKEEFQIRMPDVGEYSKETLLAF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNNIR--LAAMVVSKQQ 1006 E+ VLG Y SGHPL+ Y+ +K + EE+ T + + + M+ K Sbjct: 945 EKEVLGIYVSGHPLEAYEEKWKKSISATTADFQLDEETGHTKVHDGAKEIIGGMITEKTI 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + E FP Sbjct: 1005 KHTKTNQMMAFITVEDLLGTVEVVVFP 1031 >gi|226226143|ref|YP_002760249.1| DNA polymerase III alpha subunit [Gemmatimonas aurantiaca T-27] gi|226089334|dbj|BAH37779.1| DNA polymerase III alpha subunit [Gemmatimonas aurantiaca T-27] Length = 1165 Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust. Identities = 387/1052 (36%), Positives = 576/1052 (54%), Gaps = 47/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL HS YSLL+GA +++++ + + PA+AITD N+ +A EF +KA AGI+P Sbjct: 2 SFVHLHCHSEYSLLDGANRIDDLIKRAQHFEMPALAITDHGNMHAAWEFQEKARKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+G + + D Q P P V +VLL GY+ L++L S Y + Sbjct: 62 ILGMEAYVAPGDR----RQRGRPAPGVKPYYHLVLLARDIVGYRNLVKLTSLGYT-EGFY 116 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 RI L + +EGLI+ + +G + + A + + +LF R ++ + Sbjct: 117 TKPRIDRELLAQY-SEGLIVSSACLAGEVASHLMEDRVDQAREAAAWYAELFKGRYHLEV 175 Query: 187 QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H + ++++ LA LP+VATN++ FL ED++AHDVL+ + + +DR Sbjct: 176 QAHTSEGQAILNAKILSLADELSLPVVATNDAHFLKHEDHDAHDVLLCIGLGKDRNDRDR 235 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQVHAPILPRFIEKECDDI 303 + Y K E+ + F + L NT+ IA F + + P P + Sbjct: 236 MKYDDGLYFKAPDEIRTFFPGREDVLTNTLAIADAVDVQFAKKYYVPSFP------LPEG 289 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E + L A G + R A + ++RLD+EL VI + ++GYFLI ADF Sbjct: 290 VATENDMLVQIATDGAKERYGDPLPA------NVQERLDYELGVITKTGYAGYFLITADF 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+ A+ IPVGPGRGS AGS+ AYA ITD+ PL F LLFERFLNP+R+SMPD D+DFC Sbjct: 344 IKAARDRGIPVGPGRGSAAGSLVAYATRITDVCPLEFDLLFERFLNPERVSMPDVDVDFC 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV+ KYG + V QI+TFG+++++AA++DVGR L ++ D L KLIPN P Sbjct: 404 FERRGEVIEYVRQKYGKDSVGQIVTFGTMKSRAAIKDVGRTLGFTPAETDALAKLIPNAP 463 Query: 484 AHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +++ +AI + D +LL+ + KLEGL RH HAAG+VI PL + Sbjct: 464 NFSLTVKEAIEQVPEVKAFYKNDERYRQLLDFAVKLEGLSRHTGVHAAGVVIAPGPLDEF 523 Query: 543 VPMYR--------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G 593 VP+ D + VTQ++M +EKAG++K DFLGL TLT++ +L + +R G Sbjct: 524 VPICTQASKGAGGDGDERVIVTQYDMTALEKAGMLKMDFLGLTTLTVITDTLRNIKERLG 583 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 V L F D +TY +L T G+FQ ES L+ M+ D +D++A +L RPG Sbjct: 584 KDVVLEERGFTDEKTYQVLRAGRTGGVFQFESPLATDVLKRMRCDRFDDLVASNALLRPG 643 Query: 654 PIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+D + VY RK G+E V P ++P+L T GVI YQEQVM+IAQ+L+G SL+EAD Sbjct: 644 PLDAGMHNVYIRRKRGEEPTVYALPELEPILSNTYGVITYQEQVMRIAQVLAGISLAEAD 703 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 VLR+A+GKK E + K+ +F A G SK I + + F YGFNKSH+ AY+V Sbjct: 704 VLRKAVGKKDAELIKKELGKFTEKAIARGYSKKIIEELAGQIETFGRYGFNKSHSVAYSV 763 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 ++Y TA++KTHYP EF+AA ++ + E++ K+ +AR+ I+++ P VN F V Sbjct: 764 VAYHTAYLKTHYPAEFMAALLSSNIGKTEEVIKYIAEAREMGIEVLAPDVNESGWRFTVI 823 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 GD RI + L AI+ VG ++ A + F +L D C RVD + N+RV E+LV AGA Sbjct: 824 GDKRIRFGLGAIRNVGKGAIDSLLAARTEGAFPTLHDLCGRVDLRLCNKRVFEALVAAGA 883 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDKITLEK 942 D G R QLL +LD+ A ++ ++F + G + L Sbjct: 884 CDTLGGHRAQLLGALDHAISEASLQQEEAERGQGSLFGDLMGDAPGNGGGNNAAPQMLPN 943 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 ++ + S R + E+ +LGFY SGHPL+ ++ + + T + + +V Sbjct: 944 IAMWSESERLQREKELLGFYISGHPLEPHRTECELFATSTVAK-LGTWTAEPVTIGVVVT 1002 Query: 1003 S-KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++Q R G+ +T + + E FP Sbjct: 1003 AIRKQISKRTGAEFARLTVEDFSGSSEVLVFP 1034 >gi|108803937|ref|YP_643874.1| DNA polymerase III catalytic subunit, DnaE type [Rubrobacter xylanophilus DSM 9941] gi|108765180|gb|ABG04062.1| DNA polymerase III catalytic subunit, DnaE type [Rubrobacter xylanophilus DSM 9941] Length = 1165 Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust. Identities = 380/1059 (35%), Positives = 588/1059 (55%), Gaps = 62/1059 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F HL HS YS+L+GA + +++ + P IA+TD N++ A+ F Q+A AGI Sbjct: 5 SGEFAHLHCHSEYSMLDGASRIRDLVAFAREEGMPGIALTDHGNMYGAVRFYQEATKAGI 64 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P++GC++ + + M+++ ++ + + LL T EGY+ L++L S L Sbjct: 65 KPVMGCEVYV-TEWGTPMSDRSRSRYY---HLTLLARTPEGYKNLMKL-STAGFLHGFYY 119 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ L+ G G+I L+G S + A + LL + ++F D +Y+ +Q Sbjct: 120 KPRVDARTLRRHG-RGIICLSGCLSAEVPARILEGRLDRARELLLEYAEIF-DAVYLEMQ 177 Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ R ++ +++L LPLVATN+S + + D HDVL+ + + +R Sbjct: 178 DHGLEEQRRVNRGLLRLHRETGLPLVATNDSHYTARSDARMHDVLLCIGTGKFYNDPNRM 237 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAPILPRFIEKECDDIQ 304 R + Y+K EM +F+D PEALENT + R +++ LP F + E Sbjct: 238 RFHGEEFYVKPVEEMARLFADHPEALENTAGVVRSVEGPGIELGKTRLPNFPKPE----G 293 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LR GL R + A + R+RLDFEL IARM F YFLIV DF+ Sbjct: 294 YTGSQYLRELCERGLRKRYGRRA-----SDPEVRRRLDFELETIARMGFEDYFLIVWDFV 348 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AK I VGPGRGS AGS+ AYAL ITD+DPL++SLLFERFLNPDR+SMPD DIDF Sbjct: 349 KYAKDRGIAVGPGRGSAAGSIVAYALEITDLDPLQYSLLFERFLNPDRISMPDVDIDFSV 408 Query: 425 DRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 R EV+RYV KYG HE VAQIITFG++ AKAA+RD R Q PY++ D+L KLIP P Sbjct: 409 AGRSEVMRYVTEKYGGHEHVAQIITFGTIGAKAAIRDAARIFQYPYAETDKLAKLIPEKP 468 Query: 484 A---------------------HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 HP + + I RF E D + R+L+ + ++EG Sbjct: 469 VGTTLKDVLRRTGDGRYEPTEKHPGAAREIL---RFVER---DEAAKRVLDTAFEIEGYA 522 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581 RHA THAAG+VI + PL+ +VP+ R + + V Q M +E GL+K DFLGL+ L + Sbjct: 523 RHAGTHAAGVVISEEPLTDIVPLQRVAKDESSVMVQHPMSDVEALGLLKVDFLGLRNLDV 582 Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 ++++L + + G ++++ IP DD ET L T G+FQ ESSGM++ L+ ++PD Sbjct: 583 IEETLRIVRETTGERINIREIPLDDEETLKLFARGDTFGVFQFESSGMQRMLQEVRPDRF 642 Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 +D++AL +LYRPGP+D I + K+ E + P + P+L+ T GV YQEQ+M+I++ Sbjct: 643 DDLVALNALYRPGPMDYIPNFKKGKHDPESVRYPDPRLKPILEPTYGVAAYQEQLMEISK 702 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 +L G++ EAD LR+A+GKK K+ + +++F+ G +NG+ +A ++E + K Y Sbjct: 703 VLGGFTPGEADTLRKAIGKKKKDILATLRDKFMRGCEENGVEPGVARELWEWMEKAGGYS 762 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSH+A Y+ +++QTA++K HYP ++AA ++ M+ +++ ++ +AR I+++PP Sbjct: 763 FNKSHSACYSFLAFQTAYLKAHYPTAYMAALLSSVMNTKDRVPQYVAEARAMGIEVLPPD 822 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879 VN F V + I + L+A+K VG T I+ + + PF + DFC RVD N+ Sbjct: 823 VNESGKRFTVVGDTIRFGLSAVKNVGDNTVEAILASREEGGPFRDIFDFCERVDPSTYNK 882 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKI 938 R LESL+ GA D G+SR +L + + V + R E+ FA + + Sbjct: 883 RTLESLIKCGAFDRTGHSRSAMLAVH---TEAVERVSRGRRASSESQFAMFDLAEVAPPR 939 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---- 994 + ++ E E+ LG + S HPL +P++ K+ K + S++ + G Sbjct: 940 PEVPATPDDPRRNLEWEKETLGLFVSDHPL---RPVMHKL-RKHVDLSLSELDGRQDGAV 995 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +A + S + TRKG + + + E FP Sbjct: 996 VCVAGLATSVRVSTTRKGETMAVLQLDDTRGMAEVLVFP 1034 >gi|229829648|ref|ZP_04455717.1| hypothetical protein GCWU000342_01745 [Shuttleworthia satelles DSM 14600] gi|229791637|gb|EEP27751.1| hypothetical protein GCWU000342_01745 [Shuttleworthia satelles DSM 14600] Length = 1175 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 382/1051 (36%), Positives = 590/1051 (56%), Gaps = 46/1051 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ +SLL+G+ + + + ++ A AITD ++ +EF ++ A GI+P Sbjct: 2 SFVHLHSHTQFSLLDGSNKIRDYVSRVRELGMNAAAITDHGVMYGVIEFYKECHAQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + N G ++L+ GY LI++VS ++ D Sbjct: 62 LIGCEVYVATGSRFD-RNSGSAGEDRYYHLILIAENNRGYANLIKIVSAGFV-DGYYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+ EG+I + +G + + + A++ L + FG Y+ LQ Sbjct: 120 RVDREILERY-HEGIICTSACLAGQVQKYLQRGQYEAAKEAALWHENTFGHGNYYLELQD 178 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + D ++++L+ +PLVATN+ + ED+EAHDVL+ + ++ DR R Sbjct: 179 HGQAVDGRVVQELIRLSGETGIPLVATNDCHYTMAEDWEAHDVLLCIQTGKKITDTDRMR 238 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM +F PEA+ENT +IA RC ++ +P + D Sbjct: 239 YEGGQYYVKSEEEMRKLFPFAPEAIENTQKIADRCQVTIEFGVTKMPHYAVPRGYDAW-- 296 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GL+ R GA A + +L +EL VI +M + YFLIV D+I + Sbjct: 297 --TYLNKLCYEGLDRRYGDGADA-------LKPQLSYELGVIQKMGYVDYFLIVWDYINY 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ + VGPGRGS AGS+ AY ITDIDP+RF L+FERFLNP+R++MPD D+DF + Sbjct: 348 ARTHGCTVGPGRGSAAGSLVAYTTGITDIDPIRFQLIFERFLNPERVTMPDIDVDFDYEH 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R +VIRYV KYG + V QIITFG+L + A+RDVGR L +PY VD + K +P + Sbjct: 408 RGDVIRYVTEKYGEDAVTQIITFGTLAPRNAIRDVGRVLDLPYGLVDTVAKSVPQELKIT 467 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + +++ D V L+++++KLEGL R++STHAAG+VI + + + VP+ Sbjct: 468 ID-KALKANPELKKSYDEDEEVHNLIDMARKLEGLPRNSSTHAAGVVIAAKAMDEYVPLA 526 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQR-GVKVDLSLIPFD 604 R ++ VTQFNM +E+ GL+K DFLGL+TL ++ ++ D A G+ +D++ IP+D Sbjct: 527 RGTDGNV-VTQFNMIEVEELGLLKMDFLGLRTLNVIADAVRDARANHPGLDLDINRIPYD 585 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D E Y ++ G+FQLES+GM+ ++ ++P ++DIIA ++LYRPGP+D I Y Sbjct: 586 DPEVYAMIGRGQCEGVFQLESAGMKSFMKELKPANLDDIIAGIALYRPGPMDFIPRYIKG 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K + IV P + P+L+ T G I+YQEQVMQI Q L+GYSL AD++RRAM KK +E Sbjct: 646 KKNADAIVYDCPQLKPILESTYGCIVYQEQVMQIVQQLAGYSLGRADLVRRAMSKKHADE 705 Query: 725 MDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 M++++ FI +G NGIS+ +A I++ + FA+Y FNKSHAA YAVI+YQT Sbjct: 706 MERERHNFIFGNREEGVAGCLANGISEAVASKIYDEMMDFANYAFNKSHAACYAVITYQT 765 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K +YP EF+AA MT ++ +K+ ++ R+ I+++PP +N+ F D + Sbjct: 766 AYLKHYYPREFMAALMTTFINQSDKVSQYIAHCREIGIEVLPPDINSGDGRFVADDKGVR 825 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y + AIK VG I+ E +A PF +LEDF +RV K +N+R +E+L+ AGA D Sbjct: 826 YGMYAIKSVGHPVIDAIVAERNARGPFKTLEDFLTRVSDKAVNKRSVENLIKAGACDSLD 885 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKG--TFSDKI-TLEKFSVENSSV 950 +R Q+ I +K+ ++F A E+G F+ K+ +E+F + Sbjct: 886 GNRRQMTYIFPTIMDQVSSEKKHSMAGQMSLFDIAGEEGREDFAFKMPDVEEFD-RQQLL 944 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY-------EESVATIRG-NNIRLAAMVV 1002 FE E VLG Y SGHPL+ ++RK E+ A I+ + LA M+ Sbjct: 945 AFEKE--VLGIYVSGHPLEDDLDLIRKNTSDNTLEFRLDQEKGQAPIQDKKQVVLAGMIT 1002 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 SK + TR + + + E FP Sbjct: 1003 SKNVRFTRNNQPMAILNLEDLYGTVELVVFP 1033 >gi|289434854|ref|YP_003464726.1| DNA polymerase III, alpha subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171098|emb|CBH27640.1| DNA polymerase III, alpha subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1108 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 374/1031 (36%), Positives = 590/1031 (57%), Gaps = 47/1031 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S+++++ K PA+AITD N L+ A+EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ T GY L+++ S + ++G++ Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAETTAGYHELLKIASAIQTREEGQE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ ++ LI ++ G+ G ++R + A + +FG D +Y++LQ+ Sbjct: 110 LPQSWLRAY-SKDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + ++ ++ VAT N ++ +D +A +VL A+ + V + P Sbjct: 169 ---NPRLFGKIETFCMEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ + +D + E T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQKEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRF----PLNADQSAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR A AGLE R G A DY++RLD+EL VI M F+ YFLIV D I++++ Sbjct: 282 EVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ ++ Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--IT 451 Query: 489 LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 LQ +S E + ++ ++ E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 452 LQKAIQESPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQL 511 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 512 G-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLEDE 570 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T T G+FQ ES G+R+ L ++P EDI+A+ +LYRPGP++ I + RK+ Sbjct: 571 KTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKH 630 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKE I HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + ++ Sbjct: 631 GKEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLN 690 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +++ F+ GA G S++ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP Sbjct: 691 EERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPAA 750 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845 F+++ ++ N +KI ++ +A+ + I+++ PS+N F++ G+N I YS I+ V Sbjct: 751 FMSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQMEGENAIRYSFRVIRKV 810 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 T I+ PF DFC R+ K L +LE+LV +G D FG R +L ++ Sbjct: 811 PTKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLATI 870 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 871 DAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYV 927 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 S HP+ Y+ L+ + I +A I G N R+A V + +T+KG + ++T S+ Sbjct: 928 SAHPVSYYQTKLQNLAIT----RLADIHSGKNYRVAVYVHEIKSIRTKKGETMCFLTISD 983 Query: 1023 PAKEYEANFFP 1033 KE A FP Sbjct: 984 DTKELSAVMFP 994 >gi|148273031|ref|YP_001222592.1| DNA polymerase III subunit alpha [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830961|emb|CAN01906.1| dnaE2 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 1170 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 397/1066 (37%), Positives = 579/1066 (54%), Gaps = 54/1066 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ SFVHL VHS YS+L+GA + ++ A + PA+AITD N+F A +F ++A A Sbjct: 1 MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQKMPAVAITDHGNVFGAFDFWKQAKA 60 Query: 65 AGIQPIIGCQLDIDM------QDNLKMTNQGK---TPFPTVPSIVLLVSTAEGYQRLIEL 115 AG++PIIG + I + ++ N G+ + + +L T EG L L Sbjct: 61 AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 SR L +G L +GLI TG SG + A K F+ Sbjct: 121 SSRASL--EGYYFKPRMDRELLSTYAKGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFR 178 Query: 176 KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG + + + H G +R + + +LA LPLVATN+ + E D +H L+ Sbjct: 179 DIFGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLC 238 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V T + +R + D YLK +M +F D EA +NT+ IA RC A + Sbjct: 239 VQSGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYM 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 PR+ E + E+ + GL R +G + D R+R D+E+ VIA+M Sbjct: 299 PRYPVPEGE----SEQTWFVKEVERGLVRRYPRG------FSDDVRKRADYEVGVIAQMG 348 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPL LLFERFLNPDR Sbjct: 349 FPGYFLVVADFINWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDR 408 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+DF RR EVIRYV +KYG ERVAQI+T+G+++AK AL+D R L P+S Sbjct: 409 VSMPDFDVDFDDRRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMG 468 Query: 473 DRLCKLIPNDPA---HPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGL 521 D+L K +P PA + L I D FRE DP ++ E +Q +E L Sbjct: 469 DKLTKAMP--PAIMGKDIPLSGILDTDHPRYREAGDFREVLAMDPEAQKVFETAQGIENL 526 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HAAG+++ PL ++P+ + + VTQF+ E GLIK DFLGL+ LT+ Sbjct: 527 KRQWGVHAAGVIMSSEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTI 586 Query: 582 LQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L+ + + RG K+ L + DD Y LL TLG+FQL+ MR L M+PD Sbjct: 587 IDDALNNIESNRGEKLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNF 646 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQ 694 EDI A+++LYRPGP+ ++ Y RKNG ++I IHP ++ L+E T G+I+YQEQ Sbjct: 647 EDISAVIALYRPGPMGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQ 706 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM +AQ L+G++L++AD+LRRAMGKK K E+DKQ E F G NG S ++++L Sbjct: 707 VMSVAQKLAGFTLAQADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILL 766 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+DY FNK+H+AAY V+SY TA++K HYP E++AA +T D+ +K+ + + R+ I Sbjct: 767 PFSDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGI 826 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 +++PP VN F I + L A++ VG + A ++ F+S +DF +V Sbjct: 827 KVLPPDVNESIGFFAAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVP 886 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FAHE 930 N+R +ESL+ AGA D G +R LL+ + + + ++ N + Sbjct: 887 LPVANKRTVESLIKAGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWD 946 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT- 989 + + K+ + + FE E +LG Y S HPL + L K+ G E +AT Sbjct: 947 EPQHARKVPERPEWAKRDKLAFERE--MLGLYVSDHPLAGLEIPLAKLASTGIAELLATD 1004 Query: 990 --IRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + G + LA ++ S Q + R G++ G V + E F Sbjct: 1005 ASMDGETVTLAGLLTSVQHRTARNSGNQYGMVQLEDFGGEITCMFM 1050 >gi|149195118|ref|ZP_01872210.1| DNA polymerase III subunit alpha [Caminibacter mediatlanticus TB-2] gi|149134831|gb|EDM23315.1| DNA polymerase III subunit alpha [Caminibacter mediatlanticus TB-2] Length = 1016 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 350/884 (39%), Positives = 529/884 (59%), Gaps = 49/884 (5%) Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 L++ ++R + + E+ ++ L+ +PL+A+ N +L++EDY D L + + Sbjct: 42 LFLEIRRDKKEENLIENDLITLSKETNIPLIASTNIFYLNKEDYIYKDALECIESNKQFD 101 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF------ 295 R + YLK++ E +F DLPEALEN ++ + + + P P F Sbjct: 102 DVHREYDIGEFYLKSKEEYEELFKDLPEALENN-KVLEEINLEIPLGNPTPPTFKFTKEY 160 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 +KE +I + E K GL+ RL + I K H ++Y++RL++E+++I +MKF G Sbjct: 161 AKKEGLEIDSDVEY-FEYKCKEGLKKRLKK--IPKELH-EEYKKRLEYEIDIIKKMKFPG 216 Query: 356 YFLIVADFIQWAKK---------NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 Y LIV DFI +AK N IPVGPGRGS AGS+ AYAL IT+IDP+++ LLFER Sbjct: 217 YMLIVWDFINYAKDPSRHLRGDGNKIPVGPGRGSAAGSLVAYALEITNIDPIKYGLLFER 276 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD D+DFCQ+RR+EVI YVQ KYG E VAQ++TFGSL AK LRD+ R Sbjct: 277 FLNPERVSMPDIDVDFCQERREEVIEYVQKKYGKENVAQVVTFGSLLAKGVLRDIARIFG 336 Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHA 525 + YS D+ KLIP+ ++L+ + + + +E +P +RL + LEGL R+ Sbjct: 337 IEYSTADKFVKLIPDKLG--ITLKEAKELEPKIQEIVNEEPLYERLYSFGEALEGLKRNT 394 Query: 526 STHAAGIVIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HAAG+VI D L + P+Y+ D D TQ+++ ++E LIKFDFLGLKTLT++ K Sbjct: 395 GKHAAGVVISDTKLWEKSPLYKQDENDDFHTTQYSLNYLEPVDLIKFDFLGLKTLTVIDK 454 Query: 585 SLDFLAQRGVKVDLSLIPFDDHE-TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++ + Q K D E + L+ + TLG+FQ+ES GM+ + ++P+ ED+ Sbjct: 455 AIKNIKQNQNKDIDIDDLSLDDEKVFKLIQSGKTLGLFQIESDGMQDLAKRLKPENFEDV 514 Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKIV----SIHPLIDPMLKETQGVIIYQEQVMQ 697 IA+++LYRPGP+D ++ Y RK+G+++I ++ P+LK T GVI+YQEQVMQ Sbjct: 515 IAMLALYRPGPMDAGMLDDYIERKHGRKEISYFFDEFEEVLKPILKPTYGVIVYQEQVMQ 574 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 I Q + G+SL EAD++RRAMGKK + M K E F + A+K G S A ++F L+ KFA Sbjct: 575 IVQAIGGFSLGEADIIRRAMGKKKADLMAKYAEEFATRAAKRGFSYENAKSLFNLIEKFA 634 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 YGFNKSH+AAYA+I+YQTA++KT+YP EF A+ ++ E DN EKI K+ +A+ I+++ Sbjct: 635 GYGFNKSHSAAYAMITYQTAFLKTYYPTEFFASLLSYEADNTEKIAKYIDEAKSMQIEVL 694 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PP VN +F N+I + L+AIKGVG+ I+ ++PF LEDF ++D+ K+ Sbjct: 695 PPDVNKSNYEFTPVKNKILFGLSAIKGVGSKAIESIV---TNRPFSDLEDFILKIDTSKV 751 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 N++VLE L+ +GA+D FGYSR LLQ+L+N+ ++ K R +N H+ F+D Sbjct: 752 NKKVLEQLIKSGAMDSFGYSRKTLLQNLENMLEF-----KKRIEDRKNAINHKNSLFADI 806 Query: 938 ITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 + + + ++ + E LGFY S HPLD YK ++K+ E + Sbjct: 807 VEENEVEEKLEINITDEFDTKTLLDGEYETLGFYVSAHPLDPYKEEIQKIKYNLSSE-IE 865 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I G V S + + ++KG++ V+ + ++E F Sbjct: 866 EIIGKEALFIGKVESMKVRISKKGNKFAIVSIMDYHGKFEVMVF 909 >gi|319651827|ref|ZP_08005952.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2] gi|317396479|gb|EFV77192.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2] Length = 923 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 350/829 (42%), Positives = 512/829 (61%), Gaps = 51/829 (6%) Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARR 280 +ED AH+ L+A+ + + + R R+ D +YLK+ EM + S P+ALENT++IA + Sbjct: 5 KEDAFAHECLLAIKNGEKLQDEARERLKSDEYYLKSSGEMAELLSGYPDALENTIKIAEQ 64 Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV-RLAQGAIAKGYHAQ---- 335 C+ +L++ LP++ AV G+ L KG+ + Sbjct: 65 CNVMLELDKQNLPKY------------------PAVKGMSADELLAEVCWKGFADRYPDA 106 Query: 336 --DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 ++R+RL +ELN+I MKFS YFLIV DF++++++N I GPGRGS AGS+ AY L IT Sbjct: 107 DGEHRERLQYELNIIKNMKFSDYFLIVWDFMKFSRENGILTGPGRGSAAGSMVAYVLYIT 166 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 D+DP+ LLFERFLNP+R+SMPD DIDF RRDEVIRYV KYG VAQI+TFG+L Sbjct: 167 DVDPIEHQLLFERFLNPERISMPDIDIDFPDHRRDEVIRYVSRKYGELHVAQILTFGTLA 226 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVD 509 AKAALRDVGRA + ++D L + +P+ +SL+ +S RF E + Sbjct: 227 AKAALRDVGRAFGLNPKELDMLSRKVPSKLG--ISLKEAYKESEPLRRFTEESDLN---R 281 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 RL E + KLEGL RH STHAAG+VI + PL + +P+ + ++ +TQ++M+ +E GL+ Sbjct: 282 RLFETAIKLEGLPRHTSTHAAGVVISEHPLVEAIPIQKG-HENVYLTQYSMEHLEDVGLL 340 Query: 570 KFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ LTL++ L + ++ G ++D+ IP DD Y LL T GIFQLES GM Sbjct: 341 KMDFLGLRNLTLIENILSSIQRKTGTQIDIKNIPLDDEAVYSLLGRGDTTGIFQLESEGM 400 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 R L +QP EDI+A+ +LYRPGP++NI ++ +RK+G++ I+ HP + P+L+ T GV Sbjct: 401 RSVLTRLQPTRFEDIVAVNALYRPGPMENIPLFIDRKHGRKPIIFPHPDLKPILENTYGV 460 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK KE +D+++ F+ GA K G ++ A + Sbjct: 461 IVYQEQIMQIAAKMAGFSLGEADLLRRAVSKKQKEVLDRERVHFVGGAVKKGYNEQAAHD 520 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 I++L+ +FA+YGFN+SHA AY+ I+YQ A++KTHYP+ F+A+ +T + N +I ++ + Sbjct: 521 IYDLIVRFANYGFNRSHAVAYSFIAYQLAYLKTHYPLYFMASLLTSAVGNEGRIAQYIGE 580 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868 RQ + + PPS+N F V + I YSLAAIKGVG R I +A +K F+ L DF Sbjct: 581 LRQMGLALSPPSINKSGYSFLVEKDSIRYSLAAIKGVGAAALRDIFQARKNKRFEDLFDF 640 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV--EKNRTNKHEN- 925 C RV +K +NR+VLESLV +G+ D FG R LL SLD ++AQ V E ++ + E+ Sbjct: 641 CIRVSTKAVNRKVLESLVHSGSFDEFGEDRAVLLASLDVAAEHAQLVMPEDDQADFFEDD 700 Query: 926 -IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 F K T D I E +RFE + VLG Y S HP+ +Y+ + Sbjct: 701 EFFPKPKYTEVDPIRSE------DKLRFEKD--VLGLYLSDHPVSIYESSFHLLDASPLI 752 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E N + A + ++ +T+KG + +++ S+ + EA FP Sbjct: 753 E--LERNANKAKTVAYLSEVKKIRTKKGEPMAFLSLSDQTGDMEAVVFP 799 >gi|313633079|gb|EFR99983.1| DNA polymerase III subunit alpha [Listeria seeligeri FSL N1-067] Length = 1108 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 374/1031 (36%), Positives = 589/1031 (57%), Gaps = 47/1031 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S+++++ K PA+AITD N L+ A+EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ T GY L+++ S + ++G++ Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAETTAGYHELLKIASAIQTREEGQE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ ++ LI ++ G+ G ++R + A + +FG D +Y++LQ+ Sbjct: 110 LPQSWLRAY-SKDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + ++ ++ VAT N ++ +D +A +VL A+ + V + P Sbjct: 169 ---NPRLFGKIETFCTEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ +D + E T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQEEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRF----PLNADQSAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR A AGLE R G A DY++RLD+EL VI M F+ YFLIV D I++++ Sbjct: 282 EVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ ++ Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--IT 451 Query: 489 LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 LQ +S E + ++ ++ E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 452 LQKAIQESPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQL 511 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 512 G-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLEDE 570 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T T G+FQ ES G+R+ L ++P EDI+A+ +LYRPGP++ I + RK+ Sbjct: 571 KTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKH 630 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKE I HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + ++ Sbjct: 631 GKEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLN 690 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +++ F+ GA G S++ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP Sbjct: 691 EERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPAA 750 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845 F+++ ++ N +KI ++ +A+ + I+++ PS+N F++ G+N I YS I+ V Sbjct: 751 FMSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQIEGENAIRYSFRVIRKV 810 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 T I+ PF DFC R+ K L +LE+LV +G D FG R +L ++ Sbjct: 811 PTKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLATI 870 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 871 DAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYV 927 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 S HP+ Y+ L+ + I +A I G N R+A V + +T+KG + ++T S+ Sbjct: 928 SAHPVSYYQTKLQNLAIT----RLADIHSGKNYRVAVYVHEVKSIRTKKGETMCFLTISD 983 Query: 1023 PAKEYEANFFP 1033 KE A FP Sbjct: 984 DTKELSAVMFP 994 >gi|257066179|ref|YP_003152435.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548] gi|256798059|gb|ACV28714.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548] Length = 1148 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 379/1070 (35%), Positives = 597/1070 (55%), Gaps = 86/1070 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G ++ +LD+ ++AITD ++ +EF ++A GI+PI Sbjct: 5 FTHLHVHTEYSLLDGFSRIDLLLDRAKELGMDSLAITDHGQMYGVIEFYKQAKKRGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + D+ + + ++LL +GY+ LI++VS Y+ + R Sbjct: 65 IGCEVYVSENDHTIKEASNRRYY----HLILLAKNMDGYKNLIKIVSEAYV-NGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + ++++ +E +I L+ +G + + N + A++ +++ FG Y+ LQ H Sbjct: 120 VSFDFIKKY-SEDIIALSACLNGEVSQRLIENDYESAKETAQRYEEAFGKGNFYLELQNH 178 Query: 190 RGYDRYRESQVVQ--LAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +E +V LA HE +PLVATN+ ++++ED DVL+ + +V +D Sbjct: 179 G----IKEQNIVNRGLARIHEEEDIPLVATNDIHYINKEDAYYQDVLLCIQTGKLVKDED 234 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--IEKECD 301 R ++ + YLK+ +EM +F A+ENT +IA +C+ H P LP F +E+ Sbjct: 235 RMKMPASEFYLKSYNEMKELFGAYQGAIENTQKIADQCNVEFTFHEPHLPYFTKVEEGLT 294 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D++ L+ + QG I K G ++ R R D E+ VIA M + YFLIV Sbjct: 295 DLEY-------------LKKLVDQGLIKKYGSISEKIRSRADKEIKVIADMGYVDYFLIV 341 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DF+++A++N+I VGPGRGS AGS+ +YAL IT IDPL++ L+FERFLNP+R+SMPD DI Sbjct: 342 WDFVRYARENDIAVGPGRGSAAGSIVSYALDITQIDPLKYKLIFERFLNPERVSMPDIDI 401 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RD+V+ YV YG + V+QI+TFG +QA+ A+RDVGR L + Y++VD++ KLIP Sbjct: 402 DFDYVLRDKVVEYVNELYGRDHVSQIVTFGRMQARNAVRDVGRVLDISYAKVDKIAKLIP 461 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + +A S+F+E +D RL++ ++K+EGL RH S HAAG+VI L+ Sbjct: 462 QAIGMTID-KAFDSSSKFKEIYESDVEAKRLIDTARKVEGLPRHTSIHAAGVVISKEVLT 520 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLS 599 ++P+ + +DL VTQ++M IE+ GL+K DFLGL+ LT+++ ++ D RG+ VDLS Sbjct: 521 DIIPLA--LSNDLVVTQYDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGIDVDLS 578 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I +D T+GIFQ ES+GMR L+ ++P +D+IA SL+RPGP+D I Sbjct: 579 KIDVNDKNVIDQFNNAKTIGIFQFESAGMRNFLKNLKPTVFDDLIAANSLFRPGPMDEIP 638 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y + KN + I P + P+L T G+I+YQEQVMQI Q L+GYSL EAD LRRAM K Sbjct: 639 KYIHNKNNPADVTFIDPALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMSK 698 Query: 720 K------------IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 K IK + D I G +NG+ ++ A I++ + FA Y FNKSH+A Sbjct: 699 KKMAVMEENRGIFIKGKTDSSGNVVIPGCIRNGVDESSANQIYDEMISFAKYAFNKSHSA 758 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY++++ QTA++K +YP E++A ++ MD K+ + + + I+++PP VN + Sbjct: 759 AYSLVAIQTAYLKYYYPEEYMANLISSVMDQSSKLYLYVNETKALGIEVLPPDVNKSFAE 818 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV---DSKKLNRRVLE 883 F V + +I + L+ IK VG+ I++A D F + +DF RV DS+ LN++ +E Sbjct: 819 FSVEEGKIIFGLSGIKNVGSNLIDSIVKARKKDGKFTNFKDFLQRVDEIDSRSLNKKGIE 878 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 SL+ AGA D Y+R L+ Y + + N+ N+ KG + L Sbjct: 879 SLIKAGAFDSLKYTRSSLMAI------YEKAISAVSDNRKINV----KGQLNLLDDLADK 928 Query: 944 SVENSSVRFENE----------QRVLGFYFSGHPLDVYKPILRKMG-----IKGYEESVA 988 E+ ++ NE + VLGFY S HPL + ++G Y++ + Sbjct: 929 PKEDVRIQEINEFPKKTKLKLEKEVLGFYISDHPL---SDLGDRLGDFVNFTTDYKDHID 985 Query: 989 TIR-----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 R + +A ++ +K + T+K + + T + E FP Sbjct: 986 DTRIHLLDNKFVSMAGVITNKSEIMTKKRQLMCFATLEDMQGSIEIVIFP 1035 >gi|170781777|ref|YP_001710109.1| DNA polymerase III subunit alpha [Clavibacter michiganensis subsp. sepedonicus] gi|169156345|emb|CAQ01493.1| DNA polymerase III alpha chain [Clavibacter michiganensis subsp. sepedonicus] Length = 1170 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 397/1066 (37%), Positives = 578/1066 (54%), Gaps = 54/1066 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ SFVHL VHS YS+L+GA + ++ A PA+AITD N+F A +F ++A A Sbjct: 1 MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQGMPAVAITDHGNVFGAFDFWKQAKA 60 Query: 65 AGIQPIIGCQLDIDM------QDNLKMTNQGK---TPFPTVPSIVLLVSTAEGYQRLIEL 115 AG++PIIG + I + ++ N G+ + + +L T EG L L Sbjct: 61 AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 SR L +G L +GLI TG SG + A K F+ Sbjct: 121 SSRASL--EGYYFKPRMDRELLSTYAKGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFR 178 Query: 176 KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG + + + H G +R + + +LA LPLVATN+ + E D +H L+ Sbjct: 179 DIFGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLC 238 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V T + +R + D YLK +M +F D EA +NT+ IA RC A + Sbjct: 239 VQSGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYM 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 PR+ E + E+ + GL R +G + D R+R D+E+ VIA+M Sbjct: 299 PRYPVPEGE----SEQTWFVKEVERGLVRRYPRG------FSDDVRKRADYEVGVIAQMG 348 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPL LLFERFLNPDR Sbjct: 349 FPGYFLVVADFINWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDR 408 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+DF RR EVIRYV +KYG ERVAQI+T+G+++AK AL+D R L P+S Sbjct: 409 VSMPDFDVDFDDRRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMG 468 Query: 473 DRLCKLIPNDPA---HPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGL 521 D+L K +P PA + L I D FRE DP ++ E +Q +E L Sbjct: 469 DKLTKAMP--PAIMGKDIPLSGILDTEHPRYREAGDFREVLAMDPEAQKVFETAQGIENL 526 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HAAG+++ PL ++P+ + + VTQF+ E GLIK DFLGL+ LT+ Sbjct: 527 KRQWGVHAAGVIMSSEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTI 586 Query: 582 LQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L+ + + RG K+ L + DD Y LL TLG+FQL+ MR L M+PD Sbjct: 587 IDDALNNIESNRGEKLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNF 646 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQ 694 EDI A+++LYRPGP+ ++ Y RKNG ++I IHP ++ L+E T G+I+YQEQ Sbjct: 647 EDISAVIALYRPGPMGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQ 706 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM +AQ L+G++L++AD+LRRAMGKK K E+DKQ E F G NG S ++++L Sbjct: 707 VMSVAQKLAGFTLAQADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILL 766 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+DY FNK+H+AAY V+SY TA++K HYP E++AA +T D+ +K+ + + R+ I Sbjct: 767 PFSDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGI 826 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 +++PP VN F I + L A++ VG + A ++ F+S +DF +V Sbjct: 827 KVLPPDVNESIGFFAAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVP 886 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FAHE 930 N+R +ESL+ AGA D G +R LL+ + + + ++ N + Sbjct: 887 LPVANKRTVESLIKAGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWD 946 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT- 989 + + K+ + + FE E +LG Y S HPL + L K+ G E +AT Sbjct: 947 EPQHARKVPERPEWAKRDKLAFERE--MLGLYVSDHPLAGLEIPLAKLASTGIAELLATD 1004 Query: 990 --IRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + G + LA ++ S Q + R G++ G V + E F Sbjct: 1005 ASMDGETVTLAGLLTSVQHRTARNSGNQYGMVQLEDFGGEITCMFM 1050 >gi|299822765|ref|ZP_07054651.1| DNA-directed DNA polymerase III alpha subunit [Listeria grayi DSM 20601] gi|299816294|gb|EFI83532.1| DNA-directed DNA polymerase III alpha subunit [Listeria grayi DSM 20601] Length = 1110 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 375/1031 (36%), Positives = 596/1031 (57%), Gaps = 46/1031 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S++ LL SL+ ++ K A ++AITD N L+ A+ F +K AA I+PI Sbjct: 3 FVHLQVKSAFDLLSSTASLDALIAKAKACGFDSLAITDKNALYGAVNFYEKCQAAQIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + G ++LL T GYQ L+++ S + Q + Sbjct: 63 IGMTVSV----------YGYIDTTRSYELLLLAETTAGYQNLLKIASAI----QTQDEKV 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L+WL+ G +GLI ++ G++G ++ +S + A + ++ +F D ++++Q Sbjct: 109 LPLNWLKAYG-KGLIAISPGATGEVEHLLMDSSPESAAEVTAYWQSIFSQDSFFLSIQAE 167 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 R +E+ V + E+ +V T + +L D A +VLMA+ + V + P Sbjct: 168 N--PRLKEA-VQNFSSAQEIDVVLTKDVQYLDAGDVRAQEVLMAIRDNRTVDYEKLPLAG 224 Query: 250 PDHYLKNRSEMV-SIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ +L + EM S+ +D + A E T +IA RC ++ + +LPRF + + E Sbjct: 225 PN-FLASADEMAASLTTDFEQQAYEQTAKIAARCQVVIPMGLQLLPRFPLRSGSNASAE- 282 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L A+AGL+ R +A+ + Y RL +EL+VI +M F YFLIV D +++A Sbjct: 283 ---LEKLALAGLQER----NVARD---KRYLDRLHYELDVITKMGFQDYFLIVWDVMRFA 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GPGRGS AGS+ +YAL ITD+DP+ + LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REVGILTGPGRGSAAGSLVSYALRITDVDPIAYRLLFERFLNPERVTMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVIRYV +KYG + VAQI TFG+L AKAA+RD R + + K+IP+ + Sbjct: 393 DEVIRYVVDKYGADHVAQIGTFGTLAAKAAIRDTARTFGLNAVLLSEWSKMIPSQLG--I 450 Query: 488 SLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+A + + + + V+ ++ EI++KLEGL RH STHAAGIVI D PL P+ Sbjct: 451 TLKAAREQNPRLNSHIHSSHVNEMIWEIAEKLEGLPRHISTHAAGIVINDEPLVTYTPV- 509 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 + D +TQ+ M +E+ GL+K DFLGL+ L+LL + L + R + L+ IP +D Sbjct: 510 QSGSGDARLTQYAMGELERIGLLKMDFLGLRNLSLLDRILKIVNYNRTKPLTLADIPLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T +L T G+FQ ESSG+R+ L ++P EDI+A+ +LYRPGP++ I + RK Sbjct: 570 KATLNLFQKGDTTGVFQFESSGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+EKIV H + +L T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK +E + Sbjct: 630 HGEEKIVYPHEDLKQILDVTYGVIVYQEQIIQVANRMAGFSLGEADILRRAVSKKKREVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D +++F+SGA+ NG ++T A +++L+ +FA+YGFN+SHAAAY+ I++Q A++K HYP Sbjct: 690 DGFRKQFVSGANANGYAETTANEVYDLIVRFANYGFNRSHAAAYSKIAFQLAYLKAHYPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N EKI ++ +A+ + I+++ PSVN F+V +N+I YSL I+ Sbjct: 750 AFMSSLLSSVFGNDEKIAQYVTEAKNYGIEMLAPSVNKSGYYFQVEQENKIRYSLRIIRK 809 Query: 845 VGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 V ++ PF DFC R+ + L +VLE+L++AGA D FG R L+ Sbjct: 810 VPNKFILELLNVRKQGGPFADFFDFCERMPNNMLTHQVLEALIYAGAFDEFGKDRAVLMA 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVENSSVRFENEQRVLGFY 962 S++ +Y ++ N+FA E S K + + + E+ G Y Sbjct: 870 SIETGLQYTDLFGESEAGM--NLFATEDSFLKSMKPKYREADPMPMDTKLDKEKEFTGQY 927 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 S HP+ Y+ + + + + E GN+ +A V + +T+KGS++ ++T S+ Sbjct: 928 VSAHPVTSYQQVAQTLAVT---ELADVTNGNSYAIAVYVHQIKTVRTKKGSQMCFLTISD 984 Query: 1023 PAKEYEANFFP 1033 +KE+ A FP Sbjct: 985 ASKEFRAVVFP 995 >gi|260588911|ref|ZP_05854824.1| DNA polymerase III alpha subunit [Blautia hansenii DSM 20583] gi|331083399|ref|ZP_08332511.1| hypothetical protein HMPREF0992_01435 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540690|gb|EEX21259.1| DNA polymerase III alpha subunit [Blautia hansenii DSM 20583] gi|330404092|gb|EGG83640.1| hypothetical protein HMPREF0992_01435 [Lachnospiraceae bacterium 6_1_63FAA] Length = 1156 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 383/1052 (36%), Positives = 603/1052 (57%), Gaps = 50/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ +N + ++ + AITD +F ++F + A AAGI+P Sbjct: 2 NFAHLHVHTEYSLLDGSNKINEYVARVKELGMNSAAITDHGVMFGCIDFYRAAKAAGIKP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+GC++ + + Q + + +VLL GY+ L+++VS+ ++ D Sbjct: 62 ILGCEVYVAPGSRFDREIGQAEDRYY---HLVLLAENNHGYENLMKIVSKAFV-DGFYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 R+ + LQE EG+I L+ +G + + + A+ L ++K+FG ++ LQ Sbjct: 118 PRVDMDLLQEY-HEGIIALSACLAGEVAKNITRGMYEEAKSAALRYEKIFGKGNFFLELQ 176 Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H + R Q+++++ + LVATN+ + + D EAHD+L+ V ++S ++R Sbjct: 177 DHGIPQQQRVNQQLLRMSQETGIALVATNDVHYTYDTDAEAHDILLCVQTRKLLSDENRM 236 Query: 247 RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R +Y+K+ EM +F +PEALENT +IA RC ++ LP+F D Sbjct: 237 RYEGGQYYVKSPEEMAELFPYIPEALENTQKIADRCEVEIEFGVTKLPKF-----DVPAP 291 Query: 306 EEENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E NK GL+ R + G + + +RL++EL VI M + YFLIV DFI Sbjct: 292 YTSWEYLNKLCYDGLKERYS-GDLT------ELEKRLEYELGVIKTMGYVDYFLIVWDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A+ ++I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD D+DFC Sbjct: 345 RFARDHDIMVGPGRGSAAGSLVSYTLGITKLDPIKYNLLFERFLNPERVSMPDIDVDFCF 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV KYG +RV QI+TFG++ A+ +RDVGR + +PY+Q D + K+IP + Sbjct: 405 ERRQEVIDYVVEKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAQCDAIAKMIPEELN 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ + + D V +L+++S++LEGL RH S HAAG+VI + + + VP Sbjct: 465 ITID-KALKMNPELKNLYTTDEMVKKLIDMSRRLEGLPRHTSMHAAGVVISQKSVDEYVP 523 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + R + VTQF M +E+ GL+K DFLGL+TLT++QK++ + + +G+ +D+ + + Sbjct: 524 LARASDGSI-VTQFTMTTLEELGLLKMDFLGLRTLTVIQKAVKLIEKNKGISLDMDHVDY 582 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D Y +L T G+FQLES+GM ++ ++P+ +ED+IA +SLYRPGP+D I Y Sbjct: 583 NDKAVYDMLGAGKTEGVFQLESAGMTSFMKELKPESLEDVIAGISLYRPGPMDFIPQYIE 642 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 KN + I + P ++P+L T G I+YQEQVMQI + L GY+L +D++RRAM KK Sbjct: 643 GKNNPDSIHFLCPQLEPILSATYGCIVYQEQVMQIVRSLGGYTLGRSDLVRRAMSKKKAA 702 Query: 724 EMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 M+K+++ F + G GIS+ IA I+E + FA Y FNKSHAAAYAV++YQ Sbjct: 703 VMEKERQNFVYGNEEEGVPGCVNRGISEEIANKIYEQMMDFAKYAFNKSHAAAYAVVAYQ 762 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K H+PVEF+AA MT +DN K+ + R+ I I+PP +N F V I Sbjct: 763 TAYLKCHFPVEFMAALMTSVIDNPPKVADYILSCRRMGIAILPPDINKGDSTFSVDGGGI 822 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y L+AIK +G I+ E + F SL DF R+ K +N++ +E+ + AGA D Sbjct: 823 RYGLSAIKSIGKPVIESIVAERNQRGDFTSLRDFIERMTGKDVNKKAIENFIKAGAFDEL 882 Query: 895 GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSS 949 +R Q + Q LD I + + + + + + + EK + + +E++ E + Sbjct: 883 PGNRRQKMMVYAQILDAIVQEKKNMMAGQMSLFDFVSEEEKTAYEIHMPDVEEYPKE-AK 941 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKM-------GIKGYEESVATIR-GNNIRLAAMV 1001 + FE E VLG Y SGHPL+ Y+ RK + E +R G + + M+ Sbjct: 942 LAFEKE--VLGIYISGHPLEEYETCWRKNISAVTTDFMPDEESGQPKVRDGQQVIVGGMI 999 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K T+ + ++T + E FP Sbjct: 1000 TEKTIKYTKTNKVMAFLTLEDLLGTVEIVVFP 1031 >gi|253580959|ref|ZP_04858221.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847801|gb|EES75769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1155 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 379/1050 (36%), Positives = 592/1050 (56%), Gaps = 49/1050 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + + ++ + AITD ++ ++F + A A GI PI Sbjct: 3 FTHLHVHTEYSLLDGSNKIKEYVARVKELGMDSAAITDHGVMYGVIDFYRAARAEGINPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + + + +VLL +GY L+++VS+ + + R Sbjct: 63 LGCEVYV--APGSRFDREAGSGEDRYYHLVLLAENNQGYANLMKIVSKGFT-EGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + L+ L+E EG+I L+ +G + R + A+ L ++ +FG ++ LQ H Sbjct: 120 VDLAVLKEY-HEGIIALSACLAGEVARYLQRGMYEDAKAAALRYQDIFGKGNFFLELQDH 178 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R +++++ + LVATN+ + ED + HD+L+ + + ++ +DR R Sbjct: 179 GIPAQRLVNQELLRMHEETGIDLVATNDVHYTRAEDADPHDILLCLQTNKKLADEDRMRY 238 Query: 249 TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +Y+K+ EM +F EALENT +IA+RC ++ LPRF D Sbjct: 239 EGGQYYVKSPEEMAELFPYALEALENTHKIAQRCHVEIEFGVTKLPRF-----DVPDGLT 293 Query: 308 ENELRNK-AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E NK GLE R ++ + RL++EL+ I M + YFLIV DFI++ Sbjct: 294 SWEYLNKLCFEGLEERYQP-------VTEELKARLNYELSTIKNMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 ARDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV+ KYG + V QI+TFG+L A+ +RDVGR L MPY+QVD + K+IP + Sbjct: 407 RQEVIEYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVLDMPYAQVDSIAKMIPQELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + ++A + L++++++LEGL RH S HAAG+VI + +S+ VP+ Sbjct: 467 ID-KALTMNPELKKAYEEQDEIHYLIDMARRLEGLPRHTSMHAAGVVISQKDVSEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 R + VTQF M +E+ GL+K DFLGL+TLT++Q ++ + + GV +D+ I +DD Sbjct: 526 RASDGSI-VTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVKLIQKDAGVTLDMQKINYDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + L T + G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y K Sbjct: 585 KKVLDSLGTGRSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N + I P ++P+LK T G I+YQEQVMQI + L+GY+L +D++RRAM KK M Sbjct: 645 NRPDTIRYDCPQLEPILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKASVM 704 Query: 726 DKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K+++ F + G NGI + A I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 705 EKERQNFVYGNEAEGVPGCIANGIDEATANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YPVEF+AA MT +D K+ ++ RQ I+I+PP VN F V + I Y Sbjct: 765 YLKYYYPVEFMAALMTSVIDFPNKVAEYILVCRQMGIKILPPDVNCGMYGFSVDNGAIRY 824 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+AIK VG ++ E + + SL+DF R +S ++N+R +E+ + AGALDC Sbjct: 825 GLSAIKSVGRPVIESLVREREENGQYRSLKDFMER-NSPQMNKRAVENFIKAGALDCLDG 883 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEKFSVENSSVR 951 +R Q + I +KN ++F +K F ++ +E+F E Sbjct: 884 NRRQKMLVYQKISDSISQDKKNSLAGQMSLFDLVSEEDKKEFEIRMPDVEEFGKEE---L 940 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVAT-----IRGNNIRLAAMVVS 1003 E+ VLG Y SGHPL+ Y+ ++ K +++ T + G + + M+ Sbjct: 941 LGYEKEVLGIYLSGHPLENYRGMMEKTISAKTSDFQQDEETNLPKVMDGQKVIIGGMITD 1000 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K T+ + ++T + E FP Sbjct: 1001 KTIKYTKNNKVMAFLTVEDLVGTVEVVVFP 1030 >gi|317057698|ref|YP_004106165.1| DNA polymerase III subunit alpha [Ruminococcus albus 7] gi|315449967|gb|ADU23531.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7] Length = 1141 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 371/1044 (35%), Positives = 582/1044 (55%), Gaps = 50/1044 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +HS YSLL+GA ++ + ++ Q A A+TD N+F+A+EF AAGI+PI Sbjct: 4 FVHLHLHSEYSLLDGACRIDRLAARLKEVGQTACAVTDHGNMFAAIEFYNTMRAAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129 +GC++ + ++ P+ ++LL GY+ LI++VS Y +G S Sbjct: 64 LGCEVYVARGSREDKDHREGKPY----HLILLCENETGYRNLIKMVSLGYT--EGFYSRP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L L++ +GLI L+G +G + + + AE+ L ++ +FG D ++ +Q+ Sbjct: 118 RIDLELLRKY-HDGLICLSGCVAGELSTKIANGNYKGAEETALLYRDIFGADNYFIEIQK 176 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HR R +++L+ +PL TN+ +L ED +A VLM ++ +T Sbjct: 177 HRDPVEQRVMPSLIRLSQDTGIPLCLTNDCHYLRREDSQAQQVLMCISTATTTDDPAISF 236 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKE 306 + + Y+K+ EM ++ +PEA+ NTV IA RC ++ + +LP F I+ D+ Sbjct: 237 ASDEFYVKSAEEMAELYPAIPEAMLNTVRIADRCDVEIKFGSTVLPYFGIDGVSDNAAY- 295 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LRN GL R + +++ +R+++EL+VI M ++ Y+LIV DFI + Sbjct: 296 ----LRNMCREGLYRRYDE-------PSEEALERMEYELSVINGMGYTDYYLIVWDFINY 344 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK ++IPVGPGRGSGAGS+ AY + ITDIDPLR+ LLFERFLNP+R++MPDFDIDFC + Sbjct: 345 AKSHDIPVGPGRGSGAGSLCAYCIGITDIDPLRYDLLFERFLNPERVTMPDFDIDFCVEG 404 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R VI YV KYG + VAQI TFG+L AK ALRD RA+ PY+ DRL K P Sbjct: 405 RQRVIDYVVEKYGADHVAQIATFGTLGAKQALRDAARAMGEPYATGDRLAKAAPRSMLLS 464 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 S++ I + R+ +D + ++++ + +EG+ R+ STHAAG+VI P+ VP+Y Sbjct: 465 DSVEKIPE---LRDMYNSDMKLRKIIDTAILIEGMPRNVSTHAAGVVITKEPVDFYVPLY 521 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R TQ+ M +E+ GL+K DFLGL LT+++ D + + D+ IP DD Sbjct: 522 --ARDGAVSTQYTMTVLERLGLLKIDFLGLSNLTIIKHCCDEIKKTHPDFDIEHIPLDDK 579 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y +L+ T G+FQ ES GM + ++P IED+IA++SLYRPGP+D+I Y ++ Sbjct: 580 AVYDMLSRGETEGVFQFESGGMTATIMKLRPSGIEDLIAVLSLYRPGPMDSIPNYIRCRH 639 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + + HP++ P+L+ T G I+YQEQVMQI + L+GYS + AD++RRAM KK + ++ Sbjct: 640 DPKLVRYKHPMLKPILEVTYGCIVYQEQVMQIFRSLAGYSFARADLVRRAMSKKKADVLE 699 Query: 727 KQKERF------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 +++ F + GA NG+ + A +IF+ + FA Y FNKSHA AYA ++Y+TA++K Sbjct: 700 NERKAFVWGDEEVCGAVANGVPEKTANDIFDEMTSFASYAFNKSHATAYATVAYRTAYLK 759 Query: 781 THYPVEFLAASMTLEM-DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 H+ E+ ++ MT + ++ EK+ + AR+ + ++PP +N F + I + L Sbjct: 760 CHFFKEYFSSLMTDAINESTEKLYGYISAARKRGVAVLPPDINKSIGGFSGEGDSIRFGL 819 Query: 840 AAIKGVGTTT-ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IKG+G+ + A I E + F +L+DFC R+ + ++ + +E+L+ AGA+D +R Sbjct: 820 LGIKGLGSNSIAAIIRERTLGGDFLNLQDFCRRMQGRDIHTKAVEALIKAGAMDPLPLNR 879 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENEQ 956 + L + I +R + F G DK ++ + + + + Sbjct: 880 HEKLINCGIIMGDLSRAASDRLEGQLDFFGSGGASGDGLDKPMIDAEELTSEELLLYEHE 939 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKT 1009 LG Y S HP+D +P R G SV TI G + MV K+ T Sbjct: 940 -ALGMYLSAHPIDTCEPFARAAGFT----SVRTILEAGLKGEGRTADILVMVTRKRSIAT 994 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 +KG + + + E E FP Sbjct: 995 KKGDMMCFAACEDKTGEMEVIVFP 1018 >gi|258653337|ref|YP_003202493.1| DNA polymerase III subunit alpha [Nakamurella multipartita DSM 44233] gi|258556562|gb|ACV79504.1| DNA polymerase III, alpha subunit [Nakamurella multipartita DSM 44233] Length = 1175 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 386/1074 (35%), Positives = 588/1074 (54%), Gaps = 66/1074 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + SFVHL VH+ YS+L+GA L + + A PA+A+TD N+F A +F ++A A Sbjct: 1 MSNTDSFVHLHVHTEYSMLDGAARLGELFARTAELGMPALAMTDHGNVFGAHDFYRQARA 60 Query: 65 AGIQPIIGCQLDIDMQDN------LKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIEL 115 AG+ PIIG + + + ++ + G + I LL T +G L L Sbjct: 61 AGVNPIIGMEAYLTPNTSRFDKTRVRWADGGDDDVSGAGAYTHITLLSETTQGMHNLFRL 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 SR L + R L E + GLI TG SG + + A F+ Sbjct: 121 ASRASL-EGFFYKPRADRELLSEY-SAGLIGTTGCPSGEVQTWLRIGNYDKALASAAEFR 178 Query: 176 KLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + G + +V L H G R R+ +++LA +LP++ATN+ + ++ D AH+ L Sbjct: 179 DILGKENYFVELMDH-GLSIETRVRDG-LIRLARDLQLPMIATNDLHYTNKADASAHEAL 236 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQV 287 + V + +R + D YLK+ +EM ++++D L EA +NT+ IA RCS Sbjct: 237 LCVQSGKTLDDPNRFKFDADDFYLKSPAEMRALWADKYDLREACDNTLLIAERCSVAFDE 296 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 + +PRF + E+ + GL +R G + R++ D+E+ V Sbjct: 297 ASSYMPRFPVPAGE----TEQTWFVKEVDKGLAIRFPGGI------PPEVRKQADYEVGV 346 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I M F GYFL+VADFI WAK + I VGPGRGSGAGS+ AYA+ ITD++PL L+FERF Sbjct: 347 ITAMNFPGYFLVVADFINWAKDHGIRVGPGRGSGAGSMVAYAMRITDLNPLVHGLIFERF 406 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNPDR+SMPDFD+DF + RR +VIRYV +YG +RVAQI+T+G+++AK A++D R L M Sbjct: 407 LNPDRVSMPDFDVDFDERRRGDVIRYVTERYGDDRVAQIVTYGTIKAKQAVKDSARVLGM 466 Query: 468 PYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514 P+S DR+ K++P +P+ P + + FR DP V ++++ Sbjct: 467 PFSVGDRITKVMPPPVMGKDVPLSKIFEPSDPRYNEG----TEFRTLVDTDPDVRKVVDT 522 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEGL R HAAG+++ PL L+P+ + + +TQF+ EK GLIK DFL Sbjct: 523 ARGLEGLKRQWGVHAAGVIMSSAPLLDLIPIMKREQDGAIITQFDYPTCEKLGLIKMDFL 582 Query: 575 GLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT+L ++ + A R + + L +P DD TY LL+ TLG+FQL+ MR L Sbjct: 583 GLRNLTILDDAVGNIRANREIDLVLEDLPLDDKATYELLSRGDTLGVFQLDGGPMRALLR 642 Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQG 687 M+PD EDI A+++LYRPGP+ ++ Y +RK G++ + IHP + +L +T G Sbjct: 643 SMRPDNFEDISAVIALYRPGPMGANSHNEYADRKTGRKPVTPIHPELADALQDLLGDTYG 702 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVM IAQ L+GY+L AD+LRRAMGKK K E+D Q E F G + G S Sbjct: 703 LIVYQEQVMAIAQHLAGYTLGAADLLRRAMGKKKKAELDAQYETFSGGMAGRGYSPHAIK 762 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++++L F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K+ + Sbjct: 763 TLWDILLPFSDYAFNKAHSAAYGMLSYWTAYLKANYPAEYMAALLTSVGDDKDKMAIYLA 822 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866 + R I++M P VN +F I + L+AI+ VGT I+ DK + Sbjct: 823 ECRSMGIKVMAPDVNASVQNFAPVGTDIRFGLSAIRNVGTGVVASIVACRKDKGAYTDFY 882 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNK 922 DF +VD+ N++V+ESL+ AGA D G+ R LL +++D + + + + Sbjct: 883 DFLDKVDATACNKKVVESLIKAGAFDSMGHPRKGLLMDHVRAIDEVLGLKKAEAIGQFDL 942 Query: 923 HENIFAHEKG-TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 + EKG TF + ++ ++ +R E+ +LG Y SGHPL + IL Sbjct: 943 FGEMSQEEKGDTFRGNVPDTEW---DTKLRLGFEREMLGLYVSGHPLAGVEHILSAQSDA 999 Query: 982 GYEESV-ATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + TI I + ++ + Q++ T+KG T + A E FFP Sbjct: 1000 SIPDVLDGTIPDRALITVGGILTNLQRRLTKKGDPWASATLEDLAGGVEVAFFP 1053 >gi|158314206|ref|YP_001506714.1| DNA polymerase III subunit alpha [Frankia sp. EAN1pec] gi|158109611|gb|ABW11808.1| DNA polymerase III, alpha subunit [Frankia sp. EAN1pec] Length = 1178 Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust. Identities = 383/1080 (35%), Positives = 588/1080 (54%), Gaps = 82/1080 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA L ++ ++++ PA+AITD ++ A +F ++A AAG++P Sbjct: 4 SFVHLHVHTEYSMLDGAARLKDMFNEVSRQGMPAVAITDHGYMYGAYDFYKQATAAGVKP 63 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPF---------PTVPSIVLLVSTAEGYQRLIELVSRM 119 IIGC+ + + L K + P + + + AEG L L SR Sbjct: 64 IIGCEAYVAPESRLLKQRVRWGEPHQKSDDVSGGGSYTHMTIWARNAEGLHNLFRLNSRA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 + + R+ QEI +E GL+ TG SG + A K T+++ Sbjct: 124 SIEGHYIKWPRMD----QEIISEHAAGLMATTGCPSGEVQTRLRLGQYDAALKAAATYQE 179 Query: 177 LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++G D Y + H +R +V +A ++ V TN+S + E + H L+ V Sbjct: 180 IYGRDNYYCEIMDHGIEIERRVRDGLVDIARALDMRFVVTNDSHYTYESERTTHAALLCV 239 Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCS----FILQVH 288 ++ V+ ++LK+ +M +I + + E T+ IA R F Q Sbjct: 240 QTASTVANPSFQFEGSGYFLKSAEQMYAIDTSDAWQQGCETTLMIAERVDPAGMFTKQ-- 297 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 ++PRF E + +E+ R + AG+ R G +++R R+++EL VI Sbjct: 298 -NLMPRFPVPEGE----TDESWFRKETWAGMARRFPDG------FDEEHRARVEYELGVI 346 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 M F YFL+VADFI WAK IPVGPGRGS AGS+ A+AL ITD+DP+ SLLFERFL Sbjct: 347 LAMGFPSYFLVVADFIMWAKSQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFL 406 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NPDR+SMPD DIDF + RR +VIRYV K+G +R+AQI+T+G+++AKAA++D R L P Sbjct: 407 NPDRVSMPDIDIDFDERRRGDVIRYVTEKWGDDRIAQIVTYGTIKAKAAIKDSSRVLGYP 466 Query: 469 YSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515 Y+ DR+ K +P DP HP +A R +D V ++++ + Sbjct: 467 YAVGDRITKAMPPAVMGKDIPLGGIFDPKHPRYSEA----GEIRGLYESDADVRKVIDTA 522 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + LEGL R A HAAG+++ P+ +P++R +TQF+ E GL+K DFLG Sbjct: 523 KGLEGLIRQAGVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCENLGLLKMDFLG 582 Query: 576 LKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L+ LT++ ++ + A RG K+DL + +D +Y LL TLG+FQL+ MR L Sbjct: 583 LRNLTVMDDAVRNVEANRGFKIDLMGLELNDAASYELLARGDTLGVFQLDGGPMRSLLRM 642 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGV 688 M+PD EDI A+++LYRPGP+ ++ + Y RKNG+++I IHP L +P+ L T G+ Sbjct: 643 MRPDNFEDISAVLALYRPGPMGANSHINYALRKNGQQEITPIHPELAEPLADILDTTHGL 702 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQVM IAQ ++GY+L +AD+LRRAMGKK KE +DK+ F G +G S+ Sbjct: 703 IVYQEQVMAIAQKVAGYTLGQADLLRRAMGKKKKEILDKEFVPFSDGMKSSGFSEAAIKT 762 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++++L F+DY FNK+H A Y ++SY TA++K ++P E++AA +T D+ +K + + Sbjct: 763 LWDILVPFSDYAFNKAHTAGYGLVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAIYLNE 822 Query: 809 ARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLE 866 R+ I+++PP VNT D+ GDN I LAAI+ VG I+ K F S Sbjct: 823 CRRMGIRVLPPDVNTSDADYTAHGDNEIRVGLAAIRNVGINVVESIVRNRKTKSRFTSFP 882 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF +VD+ N+R +ESL+ AGA D G++R L++ + V+K ++ Sbjct: 883 DFLDKVDAVACNKRTVESLIKAGAFDALGHTRRGLVEKHEQAVDAVMGVKKKNAEGQFDL 942 Query: 927 FAHEKGTFSDKITLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 FA + G +++ T F V+ + SV +E+ +LG Y S HPL + IL Sbjct: 943 FAFD-GEDAEEDTAPIFGVQEFSDQEWDKSVLLSHEREMLGLYVSDHPLLGVEHILAAKA 1001 Query: 980 IKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G +A++ G + + + ++ S Q+K T++G T + E FFP Sbjct: 1002 DCG----IASLNGGDYPDGSVVTIGGIISSLQRKVTKQGKLWALATVEDLEGGLEVMFFP 1057 >gi|313897381|ref|ZP_07830924.1| DNA polymerase III subunit alpha [Clostridium sp. HGF2] gi|312957751|gb|EFR39376.1| DNA polymerase III subunit alpha [Clostridium sp. HGF2] Length = 1026 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 368/1027 (35%), Positives = 582/1027 (56%), Gaps = 47/1027 (4%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL V S Y+LL+ L++ I+ A+A+TD + + A+ F I+PI Sbjct: 3 VHLHVRSCYTLLQSTLTIPKIVAAAKRCGYTAVALTDKHVMHGAMAFYHACKKENIKPIF 62 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G ++D+ Q+ L V+L GYQ L++L + L+ G++ Sbjct: 63 GMEVDVLEQEELY-------------GFVVLAKNDAGYQNLLKLST---WLNTGEERRIP 106 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-R 190 L L + I+LT G ++ + L +K F D YV++ R+ Sbjct: 107 DLDTLAYYAKD-CIVLTNGDQNQMETLIVKEELDLLRHWLKLCRKQFSD-FYVSIARNDS 164 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 G + + Q+ ++P A + F EED E++ L A+ + K +P Sbjct: 165 GLMEKKNPVLKQVCKELDIPYTALSRIYFEREEDEESYKTLCAIDQGVSLHDK-MLNYSP 223 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 Y + EM ++ D E L+ + IA C +Q+ +LP+F K E Sbjct: 224 RRYFRTPQEMQLLYED--EELQMSDRIAALCQVEMQLPKAVLPKFQNK----YGVSSEEF 277 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR+ GL+ R+ I+ Y +QRLD+EL+VI RM+++ YFLIV DFI++AK Sbjct: 278 LRSLCQKGLQKRMQYQPISSVY-----QQRLDYELDVIIRMQYADYFLIVWDFIRFAKTQ 332 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I +GPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D DF +RRDEV Sbjct: 333 HIYIGPGRGSAAGSLVAYCLGITHVDPIRYHLLFERFLNPERISMPDIDTDFPDNRRDEV 392 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I YV+ YG RV+ IITF +L AK LRDVG+A+++ Q+DRLCKL+PN V+L Sbjct: 393 IHYVEQLYGKHRVSHIITFNTLAAKQVLRDVGKAMEINPRQIDRLCKLVPN--VIKVTLD 450 Query: 491 -AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 A +D+RF+E + ++ RL ++KLEGL RHAS HAAGIV D + Q+ P+ DV Sbjct: 451 YAYQNDARFKELINSGETMRRLYATARKLEGLPRHASLHAAGIVFSDEAIEQVCPLI-DV 509 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHET 608 + TQF M+++E+ GLIK DFLGL+ LT++ + + + A K+D+ IP DD +T Sbjct: 510 DEGICATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVQHINATADKKLDIMRIPLDDAKT 569 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y L+ T+G+FQLES GM+ + MQP+C EDI+A ++L+RPGP++NI Y +R+ Sbjct: 570 YALIRAVDTVGVFQLESEGMKNLIRKMQPNCFEDIVATIALFRPGPMENIPEYLDRREHP 629 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 EK+ IHP + P+L+ T G++IYQEQ+MQ+AQ ++G++L +AD LR+A+ KK EE+ + Sbjct: 630 EKVDYIHPSLQPILQNTYGIMIYQEQIMQVAQTMAGFTLGKADNLRKAISKKKGEELRRM 689 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + FISGA + G + +A ++ L+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F Sbjct: 690 QAEFISGALRKGYDEALAQKVYALIMKFANYGFNRSHSVAYGMIAYQLAYLKANAPLYFF 749 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 + + + + K ++ +AR+ NIQI+ P VN + + DN + + IKG+G+ Sbjct: 750 NSLLNSVIGSETKTSEYVFEARKRNIQILLPDVNRSHNQYGIEDNALRFPFVGIKGIGSA 809 Query: 849 TARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + I+E K F DF +R++ K+ ++ +E L++AGALDCF R L+ SL++ Sbjct: 810 VSSLIVEERDKKGEFRDFFDFTARMNGNKIGKKTIEILIYAGALDCFKVGRASLMASLED 869 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA V + + + +T+ + +N+++R E E+ +GFY S HP Sbjct: 870 ALRYADLV---KIEDVDQVLFDFDLVSKPAMTMMR---DNATIRSEKEKEAIGFYLSRHP 923 Query: 968 L-DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 + DV + + + I S+ +G ++ +V +Q +T+ G + +V S+ + Sbjct: 924 IADVRSRMGKDLPILI---SLPKYKGRYVKFVCLVDRCRQYRTKNGDMMMFVIGSDETGK 980 Query: 1027 YEANFFP 1033 ++ P Sbjct: 981 FDLVCMP 987 >gi|330444096|ref|YP_004377082.1| DNA polymerase III subunit alpha [Chlamydophila pecorum E58] gi|328807206|gb|AEB41379.1| DNA polymerase III alpha subunit [Chlamydophila pecorum E58] Length = 1241 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 378/1078 (35%), Positives = 593/1078 (55%), Gaps = 63/1078 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S++ L HS YS+L+ + +++ + A PAIA+TD NLF A++F + I+P Sbjct: 2 SWIPLHCHSQYSILDATCPIKDLVAQAKAYDIPAIALTDHGNLFGAIDFYKTCVQQEIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC+ I + ++ ++LL +GY+ L L+S + ++ Sbjct: 62 ILGCECYIAPGSRFDKKKEKRSR--VAHHLILLCKNEQGYRNLC-LLSSLAFIEGFYYVP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L++ +EGL+ L+ S + A S + EK L +++LF + + +Q H Sbjct: 119 RIDKELLKK-HSEGLVCLSACLSSSVSEAAL-ESEEALEKELRWYQELFKENYFSEVQLH 176 Query: 190 R----------------GYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEA 227 + Y + + Q V++++ +P VATN+ +L ED++A Sbjct: 177 KMSEEKIASLPEEWLKQEYYNFIDKQTRVNTAVLEVSKRLGIPSVATNDIHYLHPEDWQA 236 Query: 228 HDVLMAVAHSTVVSQKDRPRVTP----------DHYLKNRSEMVSIFSDLPEALENTVEI 277 H++L+ + + + P + Y K+ +M+ +F+D+PE + NT+E+ Sbjct: 237 HEILLNIQSGETIRTAKQNTYIPNPKRKTYSSREFYFKSPQQMLELFADVPEVIANTLEV 296 Query: 278 ARRCSFIL---QVHAPI-LPRFIE-KECDDIQKEEENE---LRNKAVAGLEVRLAQ--GA 327 A+ C + H PI LP ++ KE Q E LR GL + Sbjct: 297 AKLCDVHFDFSKKHYPIYLPETLKTKEHYTEQDRYEASALFLRQLCEKGLSKYTPEVLAH 356 Query: 328 IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383 IAK + QD +QR++ E+++I Y LIV D I WAK +NIPVGPGRGSGAG Sbjct: 357 IAKKFPNQDPLELVKQRMEMEMSIIIPKGMCDYLLIVWDIIHWAKAHNIPVGPGRGSGAG 416 Query: 384 SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443 SV + L IT+I+P+RF L FERF+NP+R+S PD DID C + R+EVI Y K+G + V Sbjct: 417 SVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMEGREEVINYAIEKHGKDNV 476 Query: 444 AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503 AQIITFG+++AK A++DVGR L MP S+V+ + K IP A +++ D + + Sbjct: 477 AQIITFGTMKAKMAIKDVGRTLDMPLSKVNTIAKHIPELNA--TLAKSLETDPDLHQLYI 534 Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563 D ++++++ +LEG R+ HAAG++I PL+ +P+ S + TQF+MK Sbjct: 535 DDVEAAQVIDMAMRLEGSIRNTGVHAAGVIICGEPLTNHIPVCISKDSSMITTQFSMKPA 594 Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQ 622 E G++K D LGLKTLT + ++ + Q+ K + + +P DD T+ LL T+G+FQ Sbjct: 595 ESVGMLKVDLLGLKTLTSIHLAMSAIYQKTQKRLHMETLPLDDKMTFSLLHQGKTMGVFQ 654 Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682 +ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++ +L Sbjct: 655 MESKGMQELAKNLRPDSFEEIIAICALYRPGPMDMIPSFINRKHGKENIDYDHPLMESIL 714 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 KET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M +++ +F A+ NGI Sbjct: 715 KETYGIMVYQEQVMQIAGALANYSLGEGDVLRRAMGKKDHQQMVQERSKFCERAANNGID 774 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D+VEK+ Sbjct: 775 PDIATIIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPQEWLAALLTCDSDDVEKV 834 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKP 861 K ++A+ NI I+PP +N F + I ++L AIKGVG + H++ E P Sbjct: 835 GKLIREAQSMNIPILPPHINISSNHFVATNEGIRFALGAIKGVGKSFIEHLVKERELHGP 894 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + S++DF R + K++++ +ESLV AG DCF +R L SLD + +K Sbjct: 895 YRSIQDFIQRSNFTKISKKNMESLVDAGCFDCFEPNRDLALASLDALYNTVSKEKKEAAT 954 Query: 922 KHENIFA----HEKGTFSDKITLEKFSV-ENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 F+ HE+ + K V + E+ +LG Y + HP+D ++ Sbjct: 955 GVMTFFSLDSMHEQNPLP--VAAPKDVVFRTKKELLKKEKELLGIYLTEHPMDAFRETFP 1012 Query: 977 KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAKEYEANFFP 1033 ++ + + E G IR ++ K + KG + + S+ YE +P Sbjct: 1013 RLSVVPFGEFENLSHGAVIRTVFIIDKITTKFSSKGQKKFAILRVSDGMDSYELPVWP 1070 >gi|288870429|ref|ZP_06114074.2| DNA polymerase III alpha subunit [Clostridium hathewayi DSM 13479] gi|288867209|gb|EFC99507.1| DNA polymerase III alpha subunit [Clostridium hathewayi DSM 13479] Length = 1171 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 380/1053 (36%), Positives = 578/1053 (54%), Gaps = 46/1053 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 ++ +F HL VH+ YSLL+G+ + + + ++AITD ++ ++F + A G Sbjct: 10 RNVAFTHLHVHTEYSLLDGSCKIKELTARAKELGMDSMAITDHGVMYGVIDFYRAAREVG 69 Query: 67 IQPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 I+PIIGC++ + + T G+ + +VLL +GYQ L+++VS+ ++ D Sbjct: 70 IKPIIGCEVYVTAGSRFDRETTNGEDRYY---HLVLLAENNQGYQNLMKIVSKGFV-DGF 125 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184 R+ L E EG+I L+ +G + R + + L ++++FG+ ++ Sbjct: 126 YYKPRVDYEVL-ETYHEGIIALSACLAGEVQRYIERGMYEQGKNAALRYQQIFGEGNFFL 184 Query: 185 NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H ++ +Q +++++ + LVATN+ + +D HD+L+ + V+ + Sbjct: 185 ELQDHGIPAQHTVNQGLMRMSRETGIKLVATNDIHYTFADDATPHDILLCIQTGKKVTDE 244 Query: 244 DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R R +Y K EM +F EA++NT +IA RC+ ++ LPR+ E D Sbjct: 245 NRMRYEGGQYYCKTEEEMRKLFPYASEAIDNTHDIAERCNVEIEFGVTKLPRYDVPEGYD 304 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIV 360 G +L +AK Y D + RL++ELNVI M + YFLIV Sbjct: 305 -------------SWGYLNKLCFEGLAKHYPDDDGTLKARLEYELNVIHTMGYVDYFLIV 351 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +A+ +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD DI Sbjct: 352 WDFIHYARSQDIIVGPGRGSAAGSIVSYCLGITNIDPIRYNLLFERFLNPERVSMPDIDI 411 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC +RR EVI YV KYG E+V QI+TFG+L AK +RDVGR L MPY++ D + K+IP Sbjct: 412 DFCFERRQEVIDYVVRKYGKEQVVQIVTFGTLAAKGVVRDVGRVLDMPYARCDAIAKMIP 471 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 D + +A+ R A DP V L+++S +LEGL RH S HAAG+VI + Sbjct: 472 GDLGMTLE-KALKQSPDLRNAYNEDPEVKYLIDMSMRLEGLPRHTSMHAAGVVISRTSVD 530 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 + VP+ + TQF M +E+ GL+K DFLGL+TLT++Q ++ + + RGV +D+ Sbjct: 531 EYVPLSK-AADGTITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVKAVEKNRGVVLDMD 589 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I +DD + T G+FQLESSGM+ ++ ++P +EDIIA +SLYRPGP+D I Sbjct: 590 TIDYDDKAVLESIGTGKDDGVFQLESSGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIP 649 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y KN P ++P+L T G I+YQEQVMQI + L+GY++ +D++RRAM K Sbjct: 650 KYLKGKNDPSSATYDCPQMEPILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSK 709 Query: 720 KIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 K M+K+++ F + G NGI + A +I++ + FA Y FNKSHAAAYAV Sbjct: 710 KKTSVMEKERQNFVYGNPEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAV 769 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQTA++K +YP E++AA +T MDNV K+ ++ RQ I I+PP +N F V Sbjct: 770 VSYQTAFLKYYYPQEYMAALLTSVMDNVTKVSEYILSCRQMGISILPPDINEGESGFSVS 829 Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I Y L+AIK VG + I+ E + F S+EDF R+ +K++N+R LE+ + +GA Sbjct: 830 GGAIRYGLSAIKSVGKSVVDLIVTERESSGLFTSIEDFVDRMSNKEVNKRTLENFIKSGA 889 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENS 948 LD +R Q + + +KN +F A E+ +IT Sbjct: 890 LDTLPGTRKQKILVAPELLDQRSKEKKNSMEGQLTLFDIASEEEKTRYQITFPNVGEFPK 949 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGNNIRLAAM 1000 E+ LG Y SGHPL+ Y+ R + E G+ + + M Sbjct: 950 EELLAFEKEALGIYVSGHPLEAYETTWRNNITAVTIDFIVDEETEEARVKDGSYVTIGGM 1009 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K K TR + ++T + E FP Sbjct: 1010 ITGKTVKTTRNNKLMAFLTLEDLVGSVEVIVFP 1042 >gi|269127115|ref|YP_003300485.1| DNA polymerase III subunit alpha [Thermomonospora curvata DSM 43183] gi|268312073|gb|ACY98447.1| DNA polymerase III, alpha subunit [Thermomonospora curvata DSM 43183] Length = 1177 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 387/1074 (36%), Positives = 591/1074 (55%), Gaps = 71/1074 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA LN + ++ + PAIA+TD N+ A +F + A AG+ P Sbjct: 4 SFVHLHVHTEYSMLDGAARLNQLFAEVERQKMPAIAMTDHGNMHGAYDFWKHAKDAGVTP 63 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPT---------VPSIVLLVSTAEGYQRLIELVSRM 119 IIG + + + K Q P + + L G L +L SR Sbjct: 64 IIGIEAYMAPESRFHKKKVQWGEPSQKRDDVSGGGLINHMTLWARNKTGLHNLFKLSSRA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Y + R+ L E +EG++ TG SG I A K TF+++FG Sbjct: 124 YTEGFVFKYARMDEELLAE-HSEGVMATTGCPSGKIQTRLRLGQFDEALKAAATFQEIFG 182 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 + ++ L H +R ++++ +P V TN+S + E + AHD L+ V Sbjct: 183 KENYFLELMDHGLEIERRVRDGLLEIGKKLGIPPVVTNDSHYTHESEAAAHDALLCVQVG 242 Query: 238 TVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFI-LQVHAPILP 293 +S DR R +YLK+ EM S+ S E NT+ IA R H ++P Sbjct: 243 KQLSDPDRFRFDGTGYYLKSAEEMRSLDSSEVWAEGCRNTLLIAERVDPTGFFEHRNLMP 302 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 RF E + E + R + + G++ R G + + +R+++++E+++I +M F Sbjct: 303 RFPVPEGE----TEASWFRKEVMRGMDRRFPNG------YDEAHRRQVEYEIDIITQMGF 352 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL+ L+FERFLNP+R+ Sbjct: 353 PGYFLVVADFIMWAKNNGIAVGPGRGSAAGSLAAYALGITDLDPLQHGLIFERFLNPERV 412 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D+DF + RR +VIRYV K+G ++VA I TFG+++AKAA++D GR L PY+ D Sbjct: 413 SMPDIDVDFDERRRGDVIRYVTEKWGADKVAMIATFGTIKAKAAVKDAGRVLGFPYAMGD 472 Query: 474 RLCKLIPNDPA---HPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGLY 522 R+ K P PA + L AI D++ R+ + V ++L+++Q LEGL Sbjct: 473 RISKAFP--PAVMGKEIPLSAIFDENHPRYGEAGELRKMYEEEADVKQILDLAQGLEGLI 530 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ PL+ +P+ R +TQF+ E GL+K DFLGL+ LT++ Sbjct: 531 RQWGVHAAGVIMSSEPLTDHIPIMRRDSDGAIITQFDYPTCETLGLLKMDFLGLRNLTIM 590 Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +L + A +GV++DL +P DD +T+ LL TLG+FQL+ MR L M+PD E Sbjct: 591 DDALKAIKANKGVEIDLLKLPLDDKKTFELLARGDTLGVFQLDGGPMRALLRLMKPDNFE 650 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+++LYRPGP+ ++ Y RKNG+++I IHP ++ LK+ T G+I+YQEQV Sbjct: 651 DISAVLALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLKDILDTTYGLIVYQEQV 710 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++GY+L AD+LRRAMGKK K E+DKQ E F G +NG S ++++L Sbjct: 711 MAIAQRVAGYTLGGADLLRRAMGKKKKAELDKQFEFFEKGMRENGYSDEAIKALWDILLP 770 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 F+DY FNK+H A Y ++SY TA++K +YP E++AA +T D+ +K + + R+ + Sbjct: 771 FSDYAFNKAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSALYLNECRRMGVT 830 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 ++PP VN DF GD + + L+AI+ VG I+ A +K F DF ++V Sbjct: 831 VLPPDVNESDADFTPKGDAEVRFGLSAIRNVGENVVEAIIAARREKGAFTDFNDFLNKVP 890 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAH 929 S+ N+RV+ESL+ AGA D G+ R LL Q++D++ +++ +++F Sbjct: 891 SQVCNKRVVESLIKAGAFDSLGHRRRALLTVHEQAIDSVID----IKRKEAIGQDSLFGA 946 Query: 930 EKG---TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 G T + +T+ + + + E+ +LG Y S HPL + IL K + S Sbjct: 947 LDGGEDTTAFSVTIPDEEEWDKTTKLSFEREMLGLYVSDHPLLGVEHILAKEA----DTS 1002 Query: 987 VATIRGNNIR-------LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +A + G + R +A ++ + Q+K T++G+ + E FP Sbjct: 1003 IAALTGESDRPDGQVVTVAGLLSNLQRKVTKQGNSWAMFQLEDLGGSIEVMCFP 1056 >gi|189346342|ref|YP_001942871.1| DNA polymerase III, alpha subunit [Chlorobium limicola DSM 245] gi|189340489|gb|ACD89892.1| DNA polymerase III, alpha subunit [Chlorobium limicola DSM 245] Length = 1189 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 378/1013 (37%), Positives = 564/1013 (55%), Gaps = 67/1013 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+ + + ++A+TD ++F+ E A A ++ I Sbjct: 3 FVHLHVHTHYSMQSSPVFPGELFSACRQLGMKSVAVTDYCSIFNMPELFSDAKKADVKLI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQS 128 IG +L + +Q K F PSI+LLV + GY+ L L+SR G Sbjct: 63 IGTELFLLES---ATHSQAKNTFS--PSIILLVQSEAGYRNLCVLLSRASREGFINGTPH 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + S L E +GLI L+ SSG I RA S AE +K +FGD Y+ LQR Sbjct: 118 LE---SRLLEDHHDGLICLSAYSSGRIGRALLAGSLHEAETVTGYYKDIFGDNFYLELQR 174 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRP 246 H +D + + LA + LVATNN +L +D + ++A + SQ + Sbjct: 175 HATSFDDKLNAATIALAEKFSVELVATNNVHYLDRKDSGCYRAMIANRTKEKLSSQNLQA 234 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +HYLK EM IF D AL N+ IA +C+++ + PILP + D + Sbjct: 235 LPGSEHYLKTAEEMARIFPDNGSALANSARIAEKCTYVFKKKEPILPHY---RLPDGFDD 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E LR+ G + A G+ A G +D R R++ EL VI +M FS YFLIV+D I Sbjct: 292 EAKYLRHLTWEGAAEKYA-GSEADGITEEDVRARIELELGVIEKMGFSSYFLIVSDLISA 350 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 +++ VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R+SMPD DIDF Sbjct: 351 SRRMGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVG 410 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 + +V+ Y KYG + VA+++ G+L AKAA+RD GR L++P VDRL KL+P P Sbjct: 411 KQKVLEYTVEKYGDQSVAKVVAIGTLGAKAAIRDAGRVLEVPLPIVDRLAKLVPTKPG-- 468 Query: 487 VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ AI++ ++ + P +LLE ++ LEG R+ S HA +VI D PL + VP+ Sbjct: 469 ITLEKAISEVRDLKQFVESSPENLKLLEYARALEGRARNVSMHAGAVVITDGPLEEQVPL 528 Query: 546 Y------RDVRS-----DLP------------------VTQFNMKWIEKAGLIKFDFLGL 576 Y +VR DL VTQF+ WIE AGL+K D+LGL Sbjct: 529 YVSNKIETEVRKYADEIDLDETVQIGVKGADGVDEKQIVTQFDKNWIETAGLLKIDYLGL 588 Query: 577 KTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 +TL ++ ++L + +R + +DL +P +D +T+ + GIFQ ESSGM+ + + Sbjct: 589 ETLAVIDETLHLIRRRHNIDIDLEKVPMNDRKTFRIFQEGKMAGIFQFESSGMQNYMTRL 648 Query: 636 QPDCIEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQG 687 QP I DIIA+ +LYRPG ++ N V ++ +RK+G+E I +HP+++ +LKET G Sbjct: 649 QPTQIGDIIAMSALYRPGALNARIDENRNAVDLFVDRKHGRESIDYMHPMLEEILKETYG 708 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 VI+YQEQVMQI+Q++ G+S+++AD LR+AMGKK+ E M++ K F+SG G+ T+A Sbjct: 709 VIVYQEQVMQISQVMGGFSMAKADNLRKAMGKKMPEIMEQFKADFVSGGVAQGVHDTLAT 768 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +FEL+A+FA YGFNKSH+AAY V++Y T ++K HY EF+ A + E+ + +++K Sbjct: 769 RVFELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTAEFMTAILNSEIGDTDRMKHLTD 828 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFD 863 +A+ F I +PPS+N F + D++ I L+AIK VG AR ++ + K D Sbjct: 829 EAKSFGIMTLPPSINKSDTLFAIEDDKGKPCIRVGLSAIKQVG-GAARAVVTSRLRKKRD 887 Query: 864 --SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 +L D + VD + +NR+ LE L+ AG+ D +R +LL ++D K+ Q ++ T Sbjct: 888 FLNLFDLTASVDLRVMNRKALECLILAGSFDELDSNRAKLLANVDKAIKFGQMQNRSVTL 947 Query: 922 KHENIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 F E G + + L+ S + E++++GFY S HPL Y Sbjct: 948 GQCGFFTSEAGGTGEDVHYPDLDPADPMPESEKLLQEKKLVGFYLSRHPLSPY 1000 >gi|194336619|ref|YP_002018413.1| DNA polymerase III, alpha subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194309096|gb|ACF43796.1| DNA polymerase III, alpha subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 1189 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 378/1014 (37%), Positives = 572/1014 (56%), Gaps = 67/1014 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL H+ YS+ + + I ++A+TD +F+ E +A +AGI+ I Sbjct: 3 FIHLHAHTHYSMQSSPIFPDEIFSAAVKFGMKSVAVTDYCAMFNMPELFSEAKSAGIKLI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQS 128 IG +L + L+ + P PS+VLLV GY+ L L+SR G Sbjct: 63 IGSELLL-----LETDAHQHSRIPVSPSLVLLVQNDAGYRNLCILLSRAAREGFVNGMPH 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + S L E EGLI L+ S+G I RA ++ AE +K++FGDR Y+ LQR Sbjct: 118 IE---SRLLESCHEGLIALSAYSAGRIGRALLAGATDEAETFAAYYKQIFGDRFYLELQR 174 Query: 189 HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RP 246 H +D Q + LA + LVATNN +L +D + + ++A +S ++ + Sbjct: 175 HNTPFDDKLNEQTIALAEKLGIELVATNNVHYLERKDADCYRAMVANRTKEKLSNQNLQA 234 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 DHYLK+ EM ++FSD L NT IA +CS+ PILP F E + Sbjct: 235 LAGSDHYLKSSGEMSALFSDAHRELSNTALIAGKCSYSFSDKEPILPHFPLPEGFE---S 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E LR+ + G + + A A A G A+D R R++ EL VI +M FS YFLIV+D I Sbjct: 292 EFAYLRHLTLEGAKEKYAD-ADADGISAEDVRARIELELGVIEKMGFSSYFLIVSDLIAA 350 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 +++ VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R SMPD DIDF Sbjct: 351 SRRLGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERSSMPDIDIDFTPVG 410 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 + +V+ Y KYG E VA++I G+ AKAA+RD GR L++P VD+L KL+P P Sbjct: 411 KQKVLEYTVEKYGTESVAKVIAIGTFAAKAAIRDAGRVLEVPLPLVDKLAKLVPVKPG-- 468 Query: 487 VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ A+++ ++ + P + L+ ++ LEG R+ S HA +VI D L + VP+ Sbjct: 469 ITLEKALSEAKEMQQFAESTPELRELIRYARALEGRARNVSMHAGAVVITDGRLEEQVPL 528 Query: 546 Y------RDVRS-------DLP----------------VTQFNMKWIEKAGLIKFDFLGL 576 Y +VR D P VTQF+ WIE +GL+K D+LGL Sbjct: 529 YVSNKIETEVRKFADEIDLDEPDHVRGKASDGSEEKQVVTQFDKNWIETSGLLKIDYLGL 588 Query: 577 KTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 +TL ++ ++L + +R + ++L +P +D +T+ + GIFQ ESSGM+ + + Sbjct: 589 ETLAVIDETLKMIKRRHNLDIELEKVPMNDRKTFRIFQEGKMAGIFQFESSGMQSYMTRL 648 Query: 636 QPDCIEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQG 687 QP I DIIA+ +LYRPG ++ N V ++ +RK+G+E I +HP+++ +LKET G Sbjct: 649 QPTQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREAIDYMHPMLETILKETYG 708 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 VI+YQEQVMQI+Q++ G+SL++AD LR+AMGKK E M+K K F+ GA K G+ T+A Sbjct: 709 VIVYQEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMEKYKADFVQGAIKQGVHDTLAT 768 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +FEL+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A + E+ ++E++K Sbjct: 769 RVFELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAVLNSEIGDIERMKHLTD 828 Query: 808 DARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASA--DKP 861 +A+ F I +PPS+N F V G + I L+AIK VG AR ++ + + Sbjct: 829 EAKSFGISTLPPSINKSDALFAVEDAGGRSFIRVGLSAIKQVG-AAARAVVTSRLRRKRD 887 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +L D + VD + +NR+ LE L+ +GA D R +LL ++D K+ Q ++ T Sbjct: 888 FVNLFDLAASVDLRVMNRKALECLILSGAFDEIDQHRARLLANVDKAFKFGQMQNRSVTL 947 Query: 922 KHENIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 F E+G ++ ++ + + + +E++++GFY S HPL Y+ Sbjct: 948 GQCGFFTAEEGAELEEAHYPDMDAAEMMPEAEKLLHEKKLVGFYLSHHPLSPYR 1001 >gi|152967131|ref|YP_001362915.1| DNA polymerase III subunit alpha [Kineococcus radiotolerans SRS30216] gi|151361648|gb|ABS04651.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans SRS30216] Length = 1180 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 387/1077 (35%), Positives = 577/1077 (53%), Gaps = 67/1077 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + SF HL VH+ YS+L+GA ++++ A PA+A TD +F A +F + A Sbjct: 1 MASADSFAHLHVHTEYSMLDGAAKVDDLFRTAAEMGMPAVATTDHGFVFGAYDFWKTAKK 60 Query: 65 AGIQPIIGCQLDID----MQDNLKM--------TNQGKTPFPTVPSIVLLVSTAEGYQRL 112 G++PIIG + + QD ++ + + + + +L G L Sbjct: 61 HGVKPIIGVEAYLTPGTARQDKTRVKWGDPNGRSGDDVSGAGSYTHMTMLAQNTAGMHNL 120 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 ++ S + L+ R+ L + + GLI TG SG + A K Sbjct: 121 FKM-SSLASLEGFLYKPRMDRELLSQY-SAGLIATTGCPSGEVQTRLRLGQYDEARKAAA 178 Query: 173 TFKKLFG-DRLYVNLQRHRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHD 229 ++ +FG + + L H G D R Q L +L PL+ATN+ + D +AH Sbjct: 179 DYRDIFGAENFFCELMDH-GLDIERRVQDDLLKLAKDLDLPLLATNDLHYTHAGDSQAHA 237 Query: 230 VLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQV 287 L+ V + ++ R + D YLK+ +EM ++ D PEA +NT+ IA RC + Sbjct: 238 ALLCVQSGSTLADPKRFKFDADEFYLKSPAEMRHVWRDHPEACDNTLLIAERCEVEFTES 297 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 +PRF E +D EE+ + +GL R G D R++ D+E+ V Sbjct: 298 TGAYMPRFPCPEGED----EESWFVKEVWSGLAQRYPAGI------PDDVRKQADYEIEV 347 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I ++GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPLR L FERF Sbjct: 348 ITSKGYAGYFLVVADFINWSKENGIRVGPGRGSGAGSMAAYAMKITDLDPLRHGLFFERF 407 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+RMSMPDFD+DF + RR EVI+YV KYG +RVAQI+T+G+++AK A++D R L Sbjct: 408 LNPERMSMPDFDVDFDERRRGEVIQYVVEKYGTDRVAQIVTYGTIKAKQAVKDSSRVLGF 467 Query: 468 PYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514 P+S DR+ K +P DP H + ++ FRE +DP V ++++ Sbjct: 468 PFSMGDRITKTMPPAVMGKDIPLSGIFDPNH----KRYSEAGEFRELYKSDPEVVKVVDT 523 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEGL R HAAG+++ PL L+P+ + +TQF+ E GL+K DFL Sbjct: 524 ARGLEGLKRQWGVHAAGVIMSSDPLIDLIPIMKREADGAIITQFDYPTCETLGLVKMDFL 583 Query: 575 GLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT+L +L + G + VDL + DD T+ LL TLG+FQ + MR L Sbjct: 584 GLRNLTILDDALKNVVANGKEAVDLDALELDDQATFDLLGRGDTLGVFQFDGGPMRSLLR 643 Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687 M+PD EDI A+ +LYRPGP+ + Y RKNG+E I IHP ++ LKE T G Sbjct: 644 LMRPDNFEDISAVGALYRPGPMGAGSHTAYARRKNGQEPITPIHPELEEPLKEILGTTYG 703 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVM IAQ ++GYSL AD+LRRAMGKK +E +D + F G NG SK Sbjct: 704 LIVYQEQVMSIAQKVAGYSLGSADLLRRAMGKKKREVLDAEYVGFEKGMLDNGFSKECVK 763 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++++L F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K + Sbjct: 764 ALWDILVPFSDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAAVLTSVRDDKDKSALYLN 823 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLE 866 + R+ IQ++PP VN +F I + L AI+ VG ++EA A+K ++S Sbjct: 824 ECRRMGIQVLPPDVNESSANFTAVGADIRFGLTAIRNVGANVVDAVVEARAEKGRYESFT 883 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF ++V + N+R +ESL+ AGA D G+ R L+ ++ V++N ++ Sbjct: 884 DFLTKVPAVVCNKRTIESLIKAGAFDSLGHRRRALVAKHEDAVDAVVDVKRNEAIGQFDL 943 Query: 927 FAHEKGTFSDKITLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 FA D F VE + +E+++LG Y S HPL + +L Sbjct: 944 FAGL--GGDDDGGAGGFHVEIPDLPEWEKAELLAHERQMLGLYVSDHPLFGLERLLANAS 1001 Query: 980 ---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I E + G+NI +A M+ Q+K T++G+ VT + A E FFP Sbjct: 1002 DVPIATLLEDESRPDGSNITIAGMITGLQRKTTKQGNYWAIVTVEDLAGAIECLFFP 1058 >gi|254458525|ref|ZP_05071950.1| DNA polymerase III, alpha subunit [Campylobacterales bacterium GD 1] gi|207084833|gb|EDZ62120.1| DNA polymerase III, alpha subunit [Campylobacterales bacterium GD 1] Length = 1167 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 388/1044 (37%), Positives = 588/1044 (56%), Gaps = 84/1044 (8%) Query: 43 AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102 ++A+TD N+F A++F + AA I+PIIG + I + L K F I L Sbjct: 3 SVAMTDHGNMFGAIDFYHQMKAADIKPIIGMEGYIHNGETLD-DKSTKQRF----HICLF 57 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAF-F 160 +GY+ L+ L S+ ++ +G RI L +EGLI + G ++ Sbjct: 58 AKNKKGYENLMYLSSKAFI--EGMYYFPRINKKELAA-HSEGLICTSACLQGEVNWHLNL 114 Query: 161 FNSSQV---------AEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELP 210 N V A+ L +K++FGD Y+ L RH D+ + ++++++++ + Sbjct: 115 ANERNVRNGALGYEGAKAVALEYKEIFGDDFYLELMRHGIGDQLFIDNEILKISKETGIK 174 Query: 211 LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPE 269 +VATN++ + D + H+ M + + + +R R + + YLK+ +M +F+D+PE Sbjct: 175 IVATNDTHYTYPGDAQYHEAFMCIGMNKLYDDPNRMRHSVHEFYLKSPEQMARLFADIPE 234 Query: 270 ALENTVEIARRC-SFILQVHAPILPRFI---EKECDD---IQKEEENELRNKAVA----- 317 AL +T EI + F + V PI P F E +D I E++ L A A Sbjct: 235 ALAHTQEIVDKIEDFSITVKEPIPPNFKFTPEYAANDGLAINHEDDAPLSADASAEDKKK 294 Query: 318 -------------------GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 GL+ RL I +YR+RL+FE+N+I MKF GY L Sbjct: 295 WFSGIDKNDAEYFTFCCKRGLDNRLK---IVPQEKHDEYRERLEFEINIINSMKFPGYML 351 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DF++ AK I VGPGRGS AGS+ AY+L ITDIDP+++ LLFERFLNP+R+SMPD Sbjct: 352 IVWDFVKVAKDRGIAVGPGRGSAAGSLVAYSLDITDIDPMKYDLLFERFLNPERVSMPDI 411 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DF Q RR EVI YV KYG +VAQIITFGSL AK +RDV R L MP SQ D++ KL Sbjct: 412 DMDFMQARRGEVIDYVVEKYGRNQVAQIITFGSLLAKGVIRDVARVLDMPLSQADKMAKL 471 Query: 479 IPNDPAHPVSLQ---------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 IP++ ++ + A + + RE +D + R+ E ++KLEGL R++ HA Sbjct: 472 IPDELGITLNGKTKNGEFIDGAFQKEPKLRELIDSDANSKRVWEFAKKLEGLKRNSGIHA 531 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI + L P+Y+ VTQ+++ ++E LIKFDFLGLKTL ++ ++ + Sbjct: 532 AGVVISNEELWYKTPIYKPSGETTFVTQYSLNYLEDVDLIKFDFLGLKTLDVIDNAIKLV 591 Query: 590 AQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 +R K V + I +D + Y ++ T T+G+FQ+ESSGM+ + ++PD ED+IA+++ Sbjct: 592 KRRFDKDVIWNQIDENDPKVYEVIRTGETVGMFQIESSGMQDLNKRLKPDSFEDLIAVLA 651 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+++ ++ + RK+G+E I ++ +L +T GVI+YQEQVMQI Q + G+S Sbjct: 652 LYRPGPMESGMLDSFIERKHGRETIEYTFDTMETILGKTYGVIVYQEQVMQIVQTIGGFS 711 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L +D++RRAMGK K++M F GA K G A +F+L+ KFA YGFNKSH+ Sbjct: 712 LGYSDIIRRAMGK--KKDMSVFNHEFSDGAQKQGYDYDKASKLFDLIEKFAGYGFNKSHS 769 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++++QTAW+KT+YP EF+AA +T + DN EK+ ++ + R+ I++ PP VN + Sbjct: 770 AAYAMVTFQTAWLKTYYPNEFMAALLTSDKDNTEKVVRYIDEVRRMGIELAPPDVNDSYL 829 Query: 827 DF----KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRV 881 +F K + I + L AIKGVG I++ D F S+E+F +R+D K+N+R Sbjct: 830 EFSAITKDEKDIILFGLGAIKGVGGAAVESIIQTREEDGEFTSIENFVNRIDPSKVNKRF 889 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 +ES + +G D FGYSR LL ++ I A+ R N ++F + ++IT Sbjct: 890 VESSIKSGGFDRFGYSRKALLDQIELIVDTAKDASTARKNAVGSLFGDD-----EEITTV 944 Query: 942 KFSVENSSVR-----FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 K S++NS E E+ LGFY SGHPLD Y+ L ++ E G Sbjct: 945 KLSLKNSDEYELKEILEFEKDTLGFYVSGHPLDEYRDKLDELNYSLSSELEGIKDGTFAI 1004 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTF 1020 V Q+K ++KG++ G V+ Sbjct: 1005 FIGKVEEIQKKVSKKGNQFGIVSL 1028 >gi|309775411|ref|ZP_07670414.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308916800|gb|EFP62537.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 1026 Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust. Identities = 365/1029 (35%), Positives = 587/1029 (57%), Gaps = 51/1029 (4%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL V S Y+LL+ L++ I A+A+TD + + A+ F I+PI Sbjct: 3 VHLHVRSCYTLLQSTLTVAKIAAAAKRCGYTAVALTDKHVMHGAMAFYHACKKEQIKPIF 62 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G ++D+ +D+ V VLL GYQ L++L + L+ G+++ + Sbjct: 63 GMEVDVLEKDD-------------VYGFVLLAKNDHGYQNLMKLST---WLNTGEETRTL 106 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-R 190 L L + I++T G ++ + L + F D YV + R+ Sbjct: 107 DLDTLA-FYAKDCIVITNGDQNQMETLIVKEELDLLRHWLKVCQAQFAD-FYVAVSRNDS 164 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVT 249 G + + + QL +P A + F ED E++ L A+ VS +D+ + Sbjct: 165 GLMQKKNPVLKQLCKELGIPYTALSRVYFEYAEDEESYKTLCAIDQG--VSLQDKMLNYS 222 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P Y ++ +EM +++ D E L + IA C+ + +LP+F K E Sbjct: 223 PRRYFRSPAEMQALYED--EELAMSDHIAAMCNVEMSFPKAVLPKFHNK----YGVSSEE 276 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR+ GL+ R+ I+ Y +QRLD+EL+VI RM+++ YFLIV DFI++AK Sbjct: 277 FLRSLCQKGLQKRMQFQTISDVY-----QQRLDYELDVIIRMQYADYFLIVWDFIRFAKT 331 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +I +GPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D DF +RRDE Sbjct: 332 QHIYIGPGRGSAAGSLVAYCLGITHVDPIRYHLLFERFLNPERISMPDIDTDFPDNRRDE 391 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VIRYV+ YG RV+ IITF +L AK LRDVG+A+++ Q+DRLCKL+PN + Sbjct: 392 VIRYVEELYGKHRVSHIITFNTLAAKQVLRDVGKAMEINPRQIDRLCKLVPNVLKATLDF 451 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 A ++ RF+E ++ RL +++KLEGL RHAS HAAGIV + + Q+ P+ DV Sbjct: 452 -AYHNEPRFKEIINNGETMGRLYAVARKLEGLPRHASLHAAGIVFSNEDIEQVCPLI-DV 509 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHET 608 + TQF M+++E+ GLIK DFLGL+ LT++ + + + A K+D+ IP DD +T Sbjct: 510 DEGVCATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVQHINAASDQKLDIMHIPLDDPKT 569 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y L+ T+G+FQLES GM+ + MQP EDI+A ++L+RPGP++NI Y +R+ Sbjct: 570 YALIRAVDTVGVFQLESEGMKNLIRKMQPKSFEDIVATIALFRPGPMENIPEYLDRRAHP 629 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 EK+ IHP + P+L+ T G++IYQEQ+MQ+AQ ++G++L +AD LR+A+ KK +E+ K Sbjct: 630 EKVDYIHPSLQPILQNTYGIMIYQEQIMQVAQTMAGFTLGKADNLRKAISKKKGDELQKM 689 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 +E FI GA + G ++ +A ++ L+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F Sbjct: 690 REEFIQGALQKGYTEALAQRVYALIMKFANYGFNRSHSVAYGMIAYQLAYLKANAPLYFF 749 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 + + + + K ++ +AR+ IQI+ P VN C + + +N + + IKG+G+ Sbjct: 750 NSLLNSVIGSETKTSEYVFEARKRRIQILLPDVNRSCNQYVIEENALRFPFVGIKGIGSA 809 Query: 849 TARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + I+E K F DF +R++ K+ ++ +E L++AGALDCF ++R L+ SLD+ Sbjct: 810 VSSQIVEERKKKGQFRDFFDFTARMNGNKIGKKTIEILIYAGALDCFKFARASLMASLDD 869 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSG 965 +YA V+ ++ F D ++ +V +N+++R E E+ +GFY S Sbjct: 870 ALRYADLVKIEDVDQVLFDF--------DLVSKPAMTVVKDNAAIRAEKEKEAIGFYLSR 921 Query: 966 HPL-DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HP+ DV + R++ + S+ +G ++ ++ +Q +T+ G + +V S+ Sbjct: 922 HPIADVRSKMGRELPVL---VSLPKHKGRYVKFVCLIDRCRQYRTKNGDMMMFVVGSDET 978 Query: 1025 KEYEANFFP 1033 +++ P Sbjct: 979 GKFDLVCMP 987 >gi|116515088|ref|YP_802717.1| DNA polymerase III, a subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256942|gb|ABJ90624.1| DNA polymerase III, a subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 1172 Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust. Identities = 384/999 (38%), Positives = 573/999 (57%), Gaps = 71/999 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVH+++HS YS+++G + +++ + ITD +NL ++F AC GI+PI Sbjct: 6 FVHIRIHSDYSMIDGIIKPKKLVEYAKLMNMKVLGITDISNLHGVIKFYSSACKLGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + K ++ LL GY +I+L+S Y QS Sbjct: 66 IGVDIIV----------SSKFEQNVFSNLTLLARNNIGYNNIIKLLSESY------QS-- 107 Query: 131 ICLSWLQEIGT-----------EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + IG +GL++L+GG G I + F N ++ K LL +KK F Sbjct: 108 ---GYDNNIGLVIKIDDLLKYRKGLLVLSGGIKGNIGKCIFNNKKKLLYKYLLFYKKYFL 164 Query: 180 DRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 ++ Y+ + R + + ++Y LP+VATN LFL ++D++ H + +A+ Sbjct: 165 NKFYLEISRLGYEKEEEYIIYIKYISYKFSLPIVATNEVLFLKKKDFQVHKIKVAIYKKK 224 Query: 239 VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 +S + + T + +L+ EM+ IF D PEA+ N+ EI++RC+ I+ + LP F Sbjct: 225 TISDSNFVYKYTENQFLRKNDEMIKIFHDCPEAIINSFEISKRCNVIIPSGSYFLPLFPT 284 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFS 354 + + K+ GL+ RL + K + Y RL++EL +I +M F Sbjct: 285 GSIN-----LYDFFVKKSKEGLKKRLKTIYLNKNKREKKKDIYFSRLEYELLIIKKMGFI 339 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFLIV +FIQWAKKNNIPVGPGRGSG+GS+ ++AL IT+IDPL+F+LLFERFLNP+R+S Sbjct: 340 SYFLIVMEFIQWAKKNNIPVGPGRGSGSGSLVSFALNITEIDPLKFNLLFERFLNPNRIS 399 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 +PDFDIDFC ++RD VI +V KYG VAQIITFG++ AKA +RDVGR L PY +++ Sbjct: 400 LPDFDIDFCMNKRDLVIDHVSKKYGRNSVAQIITFGTMAAKAVVRDVGRVLGYPYGLINK 459 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 + KLIP D + +A + + + + +L+ IS+KLEG+ ++ HA G+VI Sbjct: 460 ISKLIPLDSNMNLK-KAFSIKKELIDLYHHNNDIKKLINISKKLEGVIKNIGKHAGGVVI 518 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 +S +P+ D + VTQF+ +E GL+KFDFLGLKTLT++ + + ++ Sbjct: 519 SPTKISDFIPIICDHLGNNQVTQFDKNDVEFVGLVKFDFLGLKTLTMIDMIIKRINKKDK 578 Query: 595 KVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 L+ I + +++ LL T +FQLES GMR ++ ++PD EDI++LV+LYR Sbjct: 579 IKKKFFLNKISLKNKKSFLLLKKSETTSVFQLESIGMRNLIKRLKPDSFEDIVSLVALYR 638 Query: 652 PGPIDNIVVYN--NRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V N NRK+GKEKI H + P+LK T G+I+YQEQVMQIAQ+LS Sbjct: 639 PGPLQSGMVDNFINRKHGKEKISYPDSKWQHKWLKPILKSTYGIILYQEQVMQIAQILSN 698 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 ++ SEAD+LRRAM KK +EM +QK+ F SGA +N I ++ IF LL KF+ YGFNKS Sbjct: 699 FTPSEADILRRAMAKKNPKEMMRQKKLFQSGAKENLIDVNLSKKIFYLLEKFSSYGFNKS 758 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+ YA+++YQT W+K +YP EF+ ++MTL+M N KI DAR+ ++I+PP+VN Sbjct: 759 HSVTYALLAYQTLWLKANYPSEFMVSAMTLDMTNTNKIVNLIYDARRMKLKIIPPNVNIS 818 Query: 825 CVDF---KVGDNRIYYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCSRVDSKKLNR 879 F K GD I Y L AIKG+G ++ I+E K F S DFC + KK+ R Sbjct: 819 NYSFSINKYGD--IIYGLGAIKGLGKSSIDIIIEERKKKNNAFFSFLDFCVCLLLKKITR 876 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 V E L+ +GA DCF R++L ++ + K A+ N +N + F KI+ Sbjct: 877 HVFEILIMSGACDCFNICRVELFNKIEYLLKLAKQKISN-IQLQQNNLFNFNNDFFQKIS 935 Query: 940 LEKFSVENSSVRFE----------NEQRVLGFYFSGHPL 968 ++ + E + FE E+ +LG Y S HP+ Sbjct: 936 IKNYKKEKNFYNFELYNIFLKKLQWEKEILGLYLSNHPI 974 >gi|160893094|ref|ZP_02073882.1| hypothetical protein CLOL250_00640 [Clostridium sp. L2-50] gi|156865177|gb|EDO58608.1| hypothetical protein CLOL250_00640 [Clostridium sp. L2-50] Length = 1183 Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust. Identities = 387/1049 (36%), Positives = 598/1049 (57%), Gaps = 46/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + +++ + ++AITD ++ ++F + A A GI+PI Sbjct: 3 FTHLHVHTEYSLLDGSAKIKSLVKRAKELGYDSLAITDHGVMYGVIDFYEAARAEGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IGC++ + N +G+ + +VLL +GY+ L ++VSR + + Sbjct: 63 IGCEIYVSPGSRFDRENTRGEERYY---HLVLLAENNQGYKNLSKIVSRGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQR 188 R+ + L++ EG+I L+ +G + N+ + A++ L K+FG+ Y + +Q Sbjct: 119 RVDMEVLEQY-HEGIIALSACLAGEVAVNLRKNNYEEAKEAALRHLKIFGENNYFLEMQD 177 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + V++L+ +P+V TN+S ++ ED+EAHDVL+ + + V +DR R Sbjct: 178 HGLAEQATVNAGVMRLSKELGIPMVVTNDSHYILAEDWEAHDVLLCIQTNRKVHDEDRMR 237 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T +YLK++ EM +F EAL NT +IA RC+ + +P F D + E Sbjct: 238 YTGGQYYLKSKEEMYKLFPYAKEALANTQKIADRCNVEIVFGEQKVPEF--DVPDGLTAE 295 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E E +L I K Y+ + +RL +E+N I +M + YFLIV+DFI Sbjct: 296 EYLE-----------KLCMEGIRKRYNPVTPELMERLTYEINTIKKMGYVDYFLIVSDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AK + I VGPGRGS AGS+ AY L IT+IDP+R++LLFERFLNP+R+SMPD D+DFC Sbjct: 345 RYAKDHGIAVGPGRGSAAGSIVAYCLEITNIDPIRYNLLFERFLNPERVSMPDIDVDFCY 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV KYG E+V QI+TF ++ A+ +RDVGRAL +PY+ D + K IP + Sbjct: 405 ERRQEVIDYVVRKYGKEKVVQIVTFQTMAARNVIRDVGRALDLPYALCDSVAKTIPMEIG 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + A+ +E + V +L+++++KLEGL R+ HAAG+VIG + + VP Sbjct: 465 MNID-TALKVSKELKEMYEGNADVKQLIDMARKLEGLPRNTGMHAAGVVIGRDSIDEYVP 523 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603 + R D +TQF M IE+ GL+K DFLGL+TLT++Q ++ F+ Q GV +D+ I + Sbjct: 524 LARG-GDDSIITQFTMTTIERLGLLKMDFLGLRTLTVIQDAVKFIKQETGVDIDIDHIDY 582 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD + + L+T+ T GIFQLESSGM+ ++ ++P +ED+IA +SLYRPGP+D I Y N Sbjct: 583 DDKKVFELITSGKTEGIFQLESSGMKSFMKELKPQSLEDVIAGISLYRPGPMDFIPNYIN 642 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 K EKI P + +L+ T G I+YQEQVMQI L+GY+L +D++RRAM KK + Sbjct: 643 GKEHPEKITYDVPELQEILEPTYGCIVYQEQVMQIVMKLAGYTLGRSDLVRRAMSKKKAD 702 Query: 724 EMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 M K+++ F+ G + GI + A IF+ + FA Y FNKSHAAAYAV++YQ Sbjct: 703 VMAKERQYFVYGNEELGVPGCIARGIPEATANKIFDDMTDFAKYAFNKSHAAAYAVVAYQ 762 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K +YPVEF+AA M+ DN K+ + Q RQ I+I+PP +N F I Sbjct: 763 TAFLKCYYPVEFMAALMSSVKDNSSKVAGYIQSCRQMGIRILPPDINEGYSGFSAAKGAI 822 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y ++ IK VG+ I+E A+ P+ ++DF R+ K+ N++ +E+L+ GA D F Sbjct: 823 RYGMSGIKSVGSAVVDRIVEEREANGPYKDMKDFLVRMTPKETNKKTVEALILGGAFDSF 882 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRF 952 G R Q++ + + KN + + G F++ + VE + + Sbjct: 883 GVKRRQMMMAYPMMIDEVYKERKNLSAGQMSFAEFFGGEFAEAAKTKFPDVEEYDEQEKL 942 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMG-------IKGYEESVATIRGNNIR-LAAMVVSK 1004 E+ VLG Y SGHPL Y+ ++ + + EE A ++ +I L MV Sbjct: 943 ALEKSVLGIYISGHPLLDYEKLMSEKTAFSSVDFMIDEEEGRARVQDQSICILGGMVADV 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + +VT + + E FP Sbjct: 1003 TVKMTKNNQNMAFVTLEDMVGQTEIIVFP 1031 >gi|312129891|ref|YP_003997231.1| DNA polymerase iii, alpha subunit [Leadbetterella byssophila DSM 17132] gi|311906437|gb|ADQ16878.1| DNA polymerase III, alpha subunit [Leadbetterella byssophila DSM 17132] Length = 1198 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 364/1070 (34%), Positives = 581/1070 (54%), Gaps = 82/1070 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL H+ YSLL+GA S+ + K D+ PA+AITD N+F +F A G++PI Sbjct: 3 FSHLHNHTQYSLLDGASSIKKLFAKAQQDEMPAVAITDHGNMFGVFDFVATAGKYGVKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+ + D+ + K +LL AEGY+ L +L S Y+ + R Sbjct: 63 VGCEFYV--VDDHTRKSFTKDQKDVRYHQLLLAKNAEGYKNLTKLCSLGYMEGLYSKYPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I + +++ +GLI T + + + AE+ + FG+ YV +QRH Sbjct: 121 ITKALIEKY-KDGLIATTCCIGALVPKTILKKGEEEAEQEFRWWLDRFGEDYYVEIQRHD 179 Query: 191 GYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ R ++V+ + A + + ++A+N+S ++ + D+ AHD+L+ + +S + Sbjct: 180 MAEQIRVNEVLLKFAKKYNVKVIASNDSHYVDQSDWVAHDILLCINTGEKLSTPSNKEFS 239 Query: 250 PD----------------HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 D Y K +EM +FSD+PEA++NT EI + + +LP Sbjct: 240 DDAEGSTKGTRFAFYNDQFYFKTTAEMTQLFSDIPEAIDNTNEIVGKVDHLNLKKDILLP 299 Query: 294 RF-----IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 F + DD + E LR+ G R G + + +RL+FEL+ I Sbjct: 300 NFPIPQEFKVHADDTLNQWEY-LRHLTFEGARKRY-------GTVSPEAEERLNFELHTI 351 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 M F+GYFLIV DFI+ ++ + +GPGRGS AGS AY + IT+IDP++++LLFERFL Sbjct: 352 KTMGFAGYFLIVMDFIKAGRELGVMIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFL 411 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NPDR SMPD D DF + R VI YV +KYG +VAQIIT+G++ K++++DV R + +P Sbjct: 412 NPDRKSMPDIDTDFDDEGRQRVIDYVVDKYGKNQVAQIITYGTMATKSSVKDVARVMDLP 471 Query: 469 YSQVDRLCKLIPNDPAHPVSLQA---------------------IADDSRFREARLADPS 507 ++ + + KLIP+ P + ++ Q I + + R+ Sbjct: 472 LAEANHIAKLIPDKPGYGMNFQKLIHAPISGPKSLTEIGLNPDEIENVKQIRDMYEGKDL 531 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 ++L+ ++KLEG R+ HAAGI+I LS++VP+ SDL +TQF K IE AG Sbjct: 532 TAKVLKQAEKLEGTVRNTGIHAAGIIIAPYDLSEIVPVSVAKDSDLLITQFEGKVIEDAG 591 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 +IK DFLGL+ LT+++++L + + GV++D+ IP DD ETY L T IFQ ES Sbjct: 592 VIKMDFLGLRNLTIIKEALRMIKENYGVEIDIDNIPLDDEETYRLFQRGETNAIFQFESD 651 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 GM++ ++ +QPD +D+IA+ +LYRPGPI I Y NRK+G+E I P ++ L ET Sbjct: 652 GMKKYMKELQPDRFDDLIAMNALYRPGPIGYIPNYINRKHGREPITYDLPEMEEHLAETY 711 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+ +YQEQVM ++Q L+ ++ +AD LR+AMGKK KE +DK K +F+ G +KNG + + Sbjct: 712 GITVYQEQVMLLSQKLANFTKGDADTLRKAMGKKQKEVLDKMKAKFMEGGAKNGHPEKVL 771 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 ++ FA Y FNKSH+ YA ++YQTA++KTHY E++A +T ++ N+EKI F Sbjct: 772 DKVWTDWEAFAQYAFNKSHSTCYAFVAYQTAYLKTHYTAEYMAGVLTSQLGNIEKITFFM 831 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864 ++ + +Q++ P +N F V + I + L IKG G I+E + F Sbjct: 832 EECKALGLQVLGPDINESQKRFSVNKKHEIRFGLGGIKGTGDAAVDAIIEEREKNGQFKD 891 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL--------QSLDNIQKYAQWVE 916 + DF +RV+ + +N++ LESL +AGA DCF + ++ + +YA V+ Sbjct: 892 IFDFITRVNLRTVNKKTLESLAYAGAFDCFEEIHRAIYFHVSEEGGTFIERLIRYANKVQ 951 Query: 917 KNRTNKHENIFAHEKGTFS---DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY-- 971 +++ + +F G + K +EK + + E+ V+GFY SGHPLD + Sbjct: 952 EDKMSTQNTLFGTLGGDTAFNIQKPKIEKVEEWGNIEKLRYEKEVVGFYISGHPLDQFAM 1011 Query: 972 -----KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 +P+ + K ++ TI G +V S ++++ G++ G Sbjct: 1012 EMSLCRPLDNTLLEKENKDKEFTIGG-------VVTSANIRQSKNGNQFG 1054 >gi|221632747|ref|YP_002521969.1| DNA polymerase III subunit alpha [Thermomicrobium roseum DSM 5159] gi|221155959|gb|ACM05086.1| DNA polymerase III alpha subunit [Thermomicrobium roseum DSM 5159] Length = 1166 Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust. Identities = 384/1053 (36%), Positives = 581/1053 (55%), Gaps = 59/1053 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + HL +H+ +SLL+G + + + +AI+D L+ +++ + A G+ PI Sbjct: 5 YAHLHLHTEFSLLDGLGRIPEYVGRARELGMEHLAISDHGVLYGIIDWYKAVRAEGLHPI 64 Query: 71 IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG + + +QD K T+ ++LL GY+ L++L +R L + Sbjct: 65 IGMEAYLAPRSVQDRDK----------TIYHLLLLAENERGYKNLLKLATRASL-EGFYY 113 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 RI ++ L E EGLI + GPI + + A + + ++LFG DR Y+ L Sbjct: 114 KPRIDMAMLAE-HAEGLIATSACLGGPIANNLLNGNHEAAREWGIRLRELFGPDRFYIEL 172 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ R S++V LA +LPLV TN+ +L +ED D+L+ + ++ + R Sbjct: 173 QDHGLPEQRRVNSELVALARELDLPLVVTNDVHYLRQEDASVQDLLICIQTNSTLDDPKR 232 Query: 246 PRVTPDH-YLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQ---VHAPILPRFIEKEC 300 RV D Y K+ EM +F +++PEAL NTV IA RC L+ +H P Sbjct: 233 MRVQSDQLYFKSAEEMWRLFGAEVPEALLNTVRIAERCEVELEFGRLHLPDPGIPAGMTA 292 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 DD L G+ R + ++ R+RL++EL+VI + FS Y LIV Sbjct: 293 DDY-------LAALCWEGIRQRYPE-------LTEEVRRRLEYELDVIRQTGFSSYMLIV 338 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DF ++A++ I G RGS A S+ YAL ITD+DPL L+FERFLNP+R MPD D+ Sbjct: 339 RDFAEFARQRGILYGV-RGSAAASIVLYALGITDVDPLANRLVFERFLNPERREMPDIDM 397 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF DRR EVI YV KYG E VAQIITFG++ AKAA+RDVGRA+ P+++VDR+ +LIP Sbjct: 398 DFADDRRHEVIEYVARKYGAEHVAQIITFGTMGAKAAIRDVGRAMGWPHAEVDRIARLIP 457 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A+ + R DP L++ ++KLEG+ RHA THAAG+VI PL Sbjct: 458 SGVNMTLE-RALEESPELRHLYETDPRSRELIDNARKLEGIARHAGTHAAGVVISASPLV 516 Query: 541 QLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596 + VP+ R R++ LP TQF M+ + + GL+K DFLGL LT+L +++ + + RG + Sbjct: 517 EHVPLQRPARAEEGALPTTQFPMETVAEIGLLKMDFLGLANLTILANAVELIRETRGETI 576 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL IP DD +T+ LL T G+FQLES+GMR+ + ++P + ++ A+++LYRPGP+ Sbjct: 577 DLKQIPMDDRKTFELLAEGQTFGVFQLESAGMRRYIRELRPTSVAELAAMIALYRPGPMQ 636 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +I Y K+G E I HP + +L ET GVI+YQ+QV+ IA+ +GY+L EAD++R+A Sbjct: 637 HIPRYCRAKHGLEPIQYPHPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRKA 696 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKKI E+M ++ERFI+GA G S+ A IF L+ FA Y FNK+HA YAV+SYQT Sbjct: 697 MGKKIPEKMRAERERFIAGAIAKGYSEEDAERIFNLIEPFAGYAFNKAHATCYAVVSYQT 756 Query: 777 AWMKTHYPVEFLAASM----TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-- 830 A++K +YPVE++ A + + V++I + ++ I ++PP +N F V Sbjct: 757 AYLKANYPVEYMTAILRNAPSHPSGTVKRIAAALAECQKLGISVLPPDINHSEATFTVEQ 816 Query: 831 ---GDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLES 884 G I + LA +K VG I+ A ++P F S E FC +D +NRR +ES Sbjct: 817 LPDGSRAIRFGLAMVKHVGEAAVEAILAARNEQPGKVFRSFEHFCETIDWSVVNRRAVES 876 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ GALDCFG ++ L Q IQ + R + ++F+ + + + Sbjct: 877 LIKCGALDCFGDRKILLAQLDQAIQAAQARQKALRRGQM-DLFSAVGHDQAAPLRFSRPD 935 Query: 945 VENSSVRFEN----EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 +E + E+ +LG Y S HPLD + + R G+ E G + L A+ Sbjct: 936 IEPPDIPTRTLLGWERELLGVYLSAHPLDEFVLLGRLRGLVQIAELDDESVGQTVELLAL 995 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ TR G + + + + EA FP Sbjct: 996 ISGVRKLTTRTGRVMAVLQLEDRSGTIEAVVFP 1028 >gi|78188863|ref|YP_379201.1| DNA polymerase III, alpha subunit [Chlorobium chlorochromatii CaD3] gi|78171062|gb|ABB28158.1| DNA polymerase III, alpha subunit [Chlorobium chlorochromatii CaD3] Length = 1189 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 371/1014 (36%), Positives = 560/1014 (55%), Gaps = 67/1014 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL H+ YS+ + + + A P IA+TD +F+ E +A GI+ I Sbjct: 3 FIHLHTHTHYSMQSSPIFPSELFKAAKAFGMPTIAVTDYGAMFNMPELFSEAKQVGIRLI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQS 128 IG ++ + D + + PS+VLLV GY+ L L+SR G Sbjct: 63 IGSEVLLLEHDEHQTSRH-----TVSPSLVLLVKNETGYRNLCILLSRASREGFVNGMPH 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 V S L E +GL+ L+ +G I RA S A ++++FG Y+ LQR Sbjct: 118 VE---SRLLEQYHDGLLCLSAYGAGRIGRALMAGSLDEAANFSAYYQEIFGSNFYLELQR 174 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +D Q++ LA + LVATNN +L + D + L+A +S Sbjct: 175 HNTSFDALLNEQIIGLAQKFSIELVATNNVHYLRQNDAGCYRALVANRTKEKLSGPVSAA 234 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + +HYLK+ EM +FS+ LENT+ IA +C+F P LPRF D + Sbjct: 235 LPGSEHYLKSAEEMQQLFSNEYGELENTLRIAEQCTFTFSDKEPALPRF---PLPDGFSD 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E + LR+ G + A+ +G ++ ++R++ EL VI +M FS YFLIV+D I Sbjct: 292 EASYLRHLTWEGAAEKYAKSE-EEGISQEEVKERIELELGVIEKMGFSSYFLIVSDLIAA 350 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 +++ VGPGRGS AGS+ AY IT +DPLR+ LLFERFLNP+R+SMPD DIDF Sbjct: 351 SRRMGYSVGPGRGSAAGSIVAYLTGITRVDPLRYKLLFERFLNPERLSMPDIDIDFTPVG 410 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 + +V+ Y KYG + VA++I G+L AKAA+RD GR L++P VD+L KL+P P Sbjct: 411 KQKVLEYTVEKYGADSVAKVIAIGTLGAKAAIRDAGRVLEVPLPLVDKLAKLVPTKPG-- 468 Query: 487 VSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ DSR RE + P + L++ ++ +EG R+ S HA +VI D L + VP+ Sbjct: 469 ITLEKALTDSRDLREMAESTPELKTLMQYARSMEGRARNVSMHAGAVVITDGALEEQVPL 528 Query: 546 Y-------------RDVRSDLP----------------VTQFNMKWIEKAGLIKFDFLGL 576 Y ++ D P VTQF+ WIE AGL+K D+LGL Sbjct: 529 YVSNKIETEERRFADELDLDQPDNGKAKAGESNDEKQVVTQFDKNWIETAGLLKIDYLGL 588 Query: 577 KTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 +TL ++ ++L + +R G+ +DL +P D +T+ + GIFQ ESSGM+ + + Sbjct: 589 ETLAVIDETLRMIKRRHGLDIDLEKVPMTDRKTFRIFQEGKMAGIFQFESSGMQSYMTRL 648 Query: 636 QPDCIEDIIALVSLYRPGPIDNIV--------VYNNRKNGKEKIVSIHPLIDPMLKETQG 687 QP I DIIA+ +LYRPG ++ V ++ +RK+G+E I +HP+++ +LKET G Sbjct: 649 QPTQIGDIIAMSALYRPGALNARVDEHRNAVDLFVDRKHGREAIDYMHPMLEGILKETYG 708 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 VI+YQEQVMQI+Q++ G+S+++AD LR+AMGKK E M+K K FI+G G+ T+A Sbjct: 709 VIVYQEQVMQISQVMGGFSMAKADNLRKAMGKKKPEIMEKFKADFIAGGVAQGVHDTLAT 768 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +F+L+++FA YGFNKSH+AAY V++Y T ++K HY +EF+ A + E+ + E++K Sbjct: 769 RVFDLMSEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAVLNSEIGDTERMKHLTD 828 Query: 808 DARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862 +A+ F I +PPS+N F V G + I L+AIK VG AR I+ + + Sbjct: 829 EAKSFGIATLPPSINKSDALFSVENSSNGRSAIRVGLSAIKQVG-GAARAIVTSRMRRKR 887 Query: 863 DSLE--DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 D L D + VD + +NR+ LE L+ AGA D F R +LL ++D K+ Q + T Sbjct: 888 DFLNIFDLTASVDLRVMNRKALECLILAGACDDFDPHRARLLANIDKAIKFGQMQNRTVT 947 Query: 921 NKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 F++E+G D L+ + + +E++++GFY S HPL Y+ Sbjct: 948 MGQCGFFSNEEGQEGDIHYPELDNADMMPDGEKLLHEKKLVGFYLSRHPLSAYR 1001 >gi|325263157|ref|ZP_08129892.1| DNA polymerase III, alpha subunit [Clostridium sp. D5] gi|324031550|gb|EGB92830.1| DNA polymerase III, alpha subunit [Clostridium sp. D5] Length = 1157 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 379/1069 (35%), Positives = 593/1069 (55%), Gaps = 86/1069 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + + ++ + AITD ++ ++F ++A GI+PI Sbjct: 3 FAHLHVHTEYSLLDGSNKIREYVARVKELGMNSAAITDHGVMYGVVDFYREAKKQGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + N + + +VLL GY L+++VS+ ++ + R Sbjct: 63 LGCEVYV--APNSRFDREISGGDDRYYHLVLLAENNIGYANLMKIVSKGFV-EGYYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + + L+E EG+I L+ +G + R + A+K L ++ +FG ++ LQ H Sbjct: 120 VDKALLEEY-HEGIIALSACLAGEVQRYLTKGLYEEAKKSALEYQDIFGKGNYFLELQDH 178 Query: 190 RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +Q ++Q++ ++ LVATN+ + ED + HD+L+ + + ++ ++R R Sbjct: 179 GIPEQTLVNQKLLQMSEELDIELVATNDVHYTLAEDEKPHDILLCIQTAKKLADENRMRY 238 Query: 249 TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +Y+K+ EM +F +ALENT IA RC ++ LP++ Sbjct: 239 EGGQYYVKSPEEMAHLFPYALQALENTQRIANRCEVEIEFGVLKLPKY------------ 286 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE--------------------LNV 347 + G A +Y +L FE LN Sbjct: 287 -------------------DVPDGLTAWEYLNKLCFEGLEKHYENPSEELRERLEYELNT 327 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I M + YFLIV DFI++AK N I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERF Sbjct: 328 IKNMGYVDYFLIVWDFIKYAKDNGIAVGPGRGSAAGSIVSYCLEITDIDPIRYQLLFERF 387 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPD D+DFC +RR EVI YV KYG +RV QI+TFG+L A+ +RDVGRA+ + Sbjct: 388 LNPERVSMPDIDVDFCYERRQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRAMDL 447 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 PY+ VD + K+IP + + +A+ + R+ D V L+++S++LEGL RH+S Sbjct: 448 PYAFVDTIAKMIPTELNITID-KALKMNPELRKTYETDEQVKYLIDMSKRLEGLPRHSSM 506 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAG+VI + + + VP+ R + TQF M +E+ GL+K DFLGL+TLT++Q ++ Sbjct: 507 HAAGVVISQKSVDEYVPLSRAQDGSI-TTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVR 565 Query: 588 FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + +D+ I ++D + + T T GIFQLES+GM+ ++ ++P +EDIIA + Sbjct: 566 LVKHKNPGLDMDQIDYNDKDVLDYIGTGKTDGIFQLESAGMKSFMKELKPHSLEDIIAGI 625 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+D I Y KN I P ++P+L T G I+YQEQVMQI + L+GY+L Sbjct: 626 SLYRPGPMDFIPQYIRGKNDAGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTL 685 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN--------IFELLAKFADY 759 +D+LRRAM KK + M K+++ F+ G +NG+ +A I++ + FA Y Sbjct: 686 GRSDLLRRAMSKKKGDVMQKERQIFVHGDEENGVPGCVANGIDEKTANKIYDEMIDFAKY 745 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAV+SYQTA++K +YPVEF+AA MT ++N K+ ++ RQ +I+I+PP Sbjct: 746 AFNKSHAAAYAVVSYQTAYLKYYYPVEFMAALMTSVIENPPKVAEYIYTCRQMDIKILPP 805 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KL 877 +N DF V + I Y LAAIK VG I+ + PF +LEDF SR+ K L Sbjct: 806 DINRGVADFSVDEGNIRYGLAAIKSVGKPVIEAIVSDRNEFGPFKNLEDFISRMSVKDSL 865 Query: 878 NRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 N+RV+E+ + AGALD +R Q + Q ++++ + ++ + + + + +K Sbjct: 866 NKRVIENFIKAGALDGLDGTRKQFMSIYVQIVEHVNQEKKYAMTGQMSLFDLVDDEQKSE 925 Query: 934 FSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEES 986 F K+ + +++ EN + FE E VLG Y SGHPL+ + RK + EE+ Sbjct: 926 FEIKLPDVGEYTKEN-LLAFEKE--VLGIYISGHPLEEDEEKWRKSISATTADFQPDEET 982 Query: 987 VATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 T + + + M+ K K TR + ++T + E FP Sbjct: 983 GTTKVHDGAKEIIGGMITDKTVKNTRNNQMMAFLTLEDLLGTVEVVVFP 1031 >gi|111223805|ref|YP_714599.1| DNA polymerase III subunit alpha [Frankia alni ACN14a] gi|111151337|emb|CAJ63049.1| DNA polymerase III alpha subunit [Frankia alni ACN14a] Length = 1177 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 380/1077 (35%), Positives = 592/1077 (54%), Gaps = 73/1077 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL VH+ YS+L+GA L ++ +++ Q PA+AITD ++ A +F ++A AAG+ Sbjct: 2 SNSFVHLHVHTEYSMLDGAARLKDMFSEVSRQQMPAVAITDHGYMYGAYDFHKQATAAGV 61 Query: 68 QPIIGCQLDIDMQDNL-KMTNQGKTPF---------PTVPSIVLLVSTAEGYQRLIELVS 117 +PIIGC+ + + L K + P + + + A+G + L L S Sbjct: 62 KPIIGCEAYVAPESRLLKQRVRWGEPHQKSDDVSGGGSYTHMTMWARNADGLKNLFRLNS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 R + + R+ + E +GL+ TG SG + A + T++++ Sbjct: 122 RASIEGHYIKWPRMDQEIIAE-HADGLMATTGCPSGIVQTRLRLGQYDAALQAAATYQEI 180 Query: 178 FG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 FG + + + H G D R +V +A ++ V TN+S + E + +AH L+ V Sbjct: 181 FGKENFFCEIMDH-GLDIERRVRDGLVDIARALDMRFVVTNDSHYTYEHERDAHAALLCV 239 Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRC--SFILQVHAP 290 ++ V+ ++LK+ EM I S E E T+ IA R + + H Sbjct: 240 QTASTVANPSFQFEGSGYFLKSAEEMYGIDSSDIWQEGCETTLLIAERVDPTGMFAKHN- 298 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 ++PRF + + EE+ R + AG++ R QG ++R+R+++E+ VI + Sbjct: 299 LMPRFPVPDGE----TEESWFRAETWAGMDRRFPQG------FDDEHRERVEYEIRVILQ 348 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F YFL+VADFI WAK IPVGPGRGS AGS+ A+AL ITD+DP+ SLLFERFLNP Sbjct: 349 MGFPSYFLVVADFIMWAKAQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNP 408 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPD DIDF + RR +VIRYV ++G +R+AQI+TFG+++AKAA++D R L PY+ Sbjct: 409 ERVSMPDIDIDFDERRRGDVIRYVTERWGDDRIAQIVTFGTIKAKAAIKDSSRVLGYPYA 468 Query: 471 QVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517 DR+ K +P DP HP +A R +D V +++E ++ Sbjct: 469 VGDRITKAMPPAVMGKDIPLGGIFDPKHPRFSEA----GEIRGLYESDADVKKVIETAKG 524 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R A HAAG+++ P+ +P++R +TQF+ E GL+K DFLGL+ Sbjct: 525 LEGLIRQAGVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCETLGLLKMDFLGLR 584 Query: 578 TLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ ++ + A RG+ +DL + DD Y LL TLG+FQL+ MR L M+ Sbjct: 585 NLTVMDDAVRNVEANRGITIDLLGLTLDDPAAYELLGRGDTLGVFQLDGGPMRSLLRMMR 644 Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690 PD EDI A+++LYRPGP+ ++ + Y RKNG+++I IHP + L + T G+I+ Sbjct: 645 PDNFEDISAVLALYRPGPMGANSHINYALRKNGQQEITPIHPELSEALADILDTTYGLIV 704 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM IAQ ++GYSL AD+LRRAMGKK KE +DK+ F G +G S+ ++ Sbjct: 705 YQEQVMAIAQKVAGYSLGGADLLRRAMGKKKKEILDKEFVPFSEGMKNSGYSEAAIKTLW 764 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L F+DY FNK+H A Y ++SY TA++K +YP E++AA +T D+ +K + + R Sbjct: 765 DILVPFSDYAFNKAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECR 824 Query: 811 QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDF 868 + I+++PP VN+ D+ G I LAAI+ VGT I+ K F S DF Sbjct: 825 RMGIRVLPPDVNSSNADYTAHGAAEIRVGLAAIRNVGTNVVESIVRTRKSKSRFVSFPDF 884 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHE 924 +VD+ N+R +ESL+ AGA D G++R L+ Q++D + + + + + Sbjct: 885 LDKVDAVVCNKRTIESLIKAGAFDALGHTRRGLVERHEQAVDAVMGVKKKNAEGQFDLFA 944 Query: 925 NIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 + G + +++FS + + +V+ +E+ +LG Y S HPL + IL Sbjct: 945 LDADDDPGA-APVFGVQEFSDQEWDKAVKLSHEREMLGLYVSDHPLREVEHILTARA--- 1000 Query: 983 YEESVATIR------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + S+A + G+ + +A ++ S Q+K T++G T + A E FFP Sbjct: 1001 -DCSIAALTGGEYADGSTVTIAGIISSLQRKVTKQGKLWALTTVEDLAGGLEVMFFP 1056 >gi|284991667|ref|YP_003410221.1| DNA polymerase III subunit alpha [Geodermatophilus obscurus DSM 43160] gi|284064912|gb|ADB75850.1| DNA polymerase III, alpha subunit [Geodermatophilus obscurus DSM 43160] Length = 1185 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 392/1089 (35%), Positives = 585/1089 (53%), Gaps = 94/1089 (8%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL VH+ YS+L+GA L + A PA+A+TD N+F A +F ++A AAG+ Sbjct: 6 SDSFVHLHVHTEYSMLDGAAKLPEVTKAAAEQGMPALAMTDHGNVFGAYDFYKQAKAAGV 65 Query: 68 QPIIGCQ-----------LDIDMQDNL------KMTNQGKTPFPTVPSIVLLVSTAEGYQ 110 +PIIG + D +NL +++GK + + LL T EG Sbjct: 66 KPIIGMEGYYTPGSRFDRAPFDFGENLIDEDGEGGSSRGKAAYT---HMTLLARTTEGMH 122 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L +S M L+ + R L+ GT GLI TG SG ++ A + Sbjct: 123 NLFR-ISSMASLEGQYRKPRFDRDLLERYGT-GLIATTGCPSGEVNMWLRAGKHDRARQA 180 Query: 171 LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 F+ +FG + Y + H ++ ++++A +PL+ TN+ + ED EAH Sbjct: 181 AADFQDIFGKENFYAEVMDHGLAIEKKTRPALLEIAKELGIPLLGTNDLHYTHREDAEAH 240 Query: 229 DVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 D L+ + + +++ +R + D +YLK+ +EM ++FS+LPEA +NT+ +A +C Sbjct: 241 DALLCIQTGSRLNETNRFKFNGDGYYLKSAAEMRALFSELPEACDNTLLVAEQCEVEFTE 300 Query: 288 HAPILPRFI----EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 A ++PRF E E KE E L + G+ + R++ D+ Sbjct: 301 GADLMPRFPLPPGEDETSWFIKEVERGLHKRWPGGIPDHV--------------RKQADY 346 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E+ +I +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DPL L+ Sbjct: 347 EVGIITQMGFPGYFLVVADFINWAKDNGIRVGPGRGSAAGSLAAYAMGITDLDPLAHGLI 406 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD DIDF RR EVI+YV KYG ERV+QI+T+G+++AKAA++D R Sbjct: 407 FERFLNPERVSMPDVDIDFDDRRRGEVIQYVSQKYGEERVSQIVTYGTIKAKAAIKDAAR 466 Query: 464 ALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDR 510 L PYS D L KL+P DPAHP +A + FR +DP Sbjct: 467 VLDRPYSVGDELTKLMPPDVMGKGIPLSGVFDPAHPRYKEA----AEFRARYESDPGAAE 522 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 +++ ++KLEGL R HAAG++IG PL +P+ R +TQF+ E GL+K Sbjct: 523 VVDQARKLEGLKRQWGVHAAGVIIGRYPLIDSIPIMRREADGAVITQFDYPTCETLGLLK 582 Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFD--DHETYHLLTTKGTLGIFQLESSG 627 DFLGL+ LT++ +L + G + +DL I D D TY LL+ TLG+FQ + Sbjct: 583 MDFLGLRNLTVIDDALRNIVANGKEPIDLDEISKDLTDPATYALLSRGDTLGVFQFDGGP 642 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM--- 681 MR L M+PD EDI A+ +LYRPGP+ ++ Y RKNG+++I IHP L +P+ Sbjct: 643 MRSLLRLMRPDNFEDISAVGALYRPGPMGANSHTNYALRKNGQQEITPIHPELAEPLEDI 702 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L T G+I+YQEQVM IAQ ++GYSL +AD+LRRAMGKK K +D + F +G + G Sbjct: 703 LGTTYGLIVYQEQVMAIAQKVAGYSLGKADLLRRAMGKKKKSVLDAEFVGFEAGMKERGF 762 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S ++++L FADY FNK+H+AAY ++SY TA++K +YP E++A +T D+ ++ Sbjct: 763 SDAAIKTLWDILVPFADYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDR 822 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860 + + R+ I+++PP VN DF I + LA+++ VG I A +K Sbjct: 823 RPIYLAECRRMGIKVLPPDVNESSWDFTAVGTDIRFGLASVRNVGHNVVDSIRRAREEKG 882 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 F DF ++D+ N++V+ESL AGA D G+SR ++ A +++ Sbjct: 883 AFKDFADFMRKIDTVACNKKVIESLAKAGAFDSLGHSRQGIVAVHAQAVDSAMALKRREA 942 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVE----------NSSVRFENEQRVLGFYFSGHPLDV 970 ++F G+F D+ + FS + S R E+ +LG Y S HPL Sbjct: 943 EGQFDLF----GSFGDEGADDPFSGALDIAIPTADWSKSERLVFERDMLGLYVSDHPLHG 998 Query: 971 YKPILRKMGIKGYEESVATIR------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 + +L + +A I G N+ +A ++ S + ++G+ T + Sbjct: 999 VEHVL----AANADTPIAEINAGGVEDGANVTIAGILTSVAPRTNKQGAPWAIATLEDLE 1054 Query: 1025 KEYEANFFP 1033 E FFP Sbjct: 1055 SGIEVLFFP 1063 >gi|138896305|ref|YP_001126758.1| DNA polymerase III subunit alpha [Geobacillus thermodenitrificans NG80-2] gi|134267818|gb|ABO68013.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans NG80-2] Length = 1095 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 377/1029 (36%), Positives = 584/1029 (56%), Gaps = 55/1029 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL V S YSL + ++ ++ K A+A+TD L+ A+ F ++ G++P Sbjct: 4 TFVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQRHGLRP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG D+ + + FP +VLL + EGY+ LIE+ + + Q ++ Sbjct: 64 IIGMMADVVLDGD-------SGAFP----LVLLAANEEGYRHLIEISTAV----QMREEK 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR--LLTFKKLFGDRLYVNLQ 187 + + L+ + + G+I +T G +G ++ F + +VA+ + LL +++LF RLY+ +Q Sbjct: 109 HVHEAALRRL-SGGIIAITPGLNGRVES--FLAAGEVAQAKETLLRYRQLFAGRLYIAIQ 165 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R ES +++LA +P+VATN ++ ED A L A+ ++ Sbjct: 166 RGERTRAPYESALLRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGVPLAHIPE-- 223 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YL EM F+DLPEALEN++ IA +C ++ LP+F + + Sbjct: 224 -EDERYLAALDEMARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGET----A 278 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQ 365 ++ LR RL + +A+ + D YR+RL+ EL++I M+FS YFLIVAD + Sbjct: 279 DSYLR---------RLCEQGLARRVPSADARYRERLEHELHIIQTMRFSDYFLIVADVLA 329 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++ I GPGRGS AGS+ AYAL+ITD+DP+ + LLFERFLNP+R+S+PD D+DF D Sbjct: 330 YARQRGILTGPGRGSAAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFPDD 389 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYV YG + VAQIITFG+ AKAALR+ + L + + +R+ L+PN Sbjct: 390 RREEVIRYVVETYGRDHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQGV 449 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +S Q + + FR A A P +R L I++KLEGL RH S HAAG++I PL + VP+ Sbjct: 450 TIS-QWHRESAAFRRALRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHVPL 508 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604 + + P+TQ+ M +E GL+K DFLGL+TLTLL + + + Q G D+ +P D Sbjct: 509 -QPSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGKPFDVRALPLD 567 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY LL+ T G+FQLESSGM++ L ++P +E+I+A+ +LYRPGP++ I Y R Sbjct: 568 DEKTYALLSAGDTSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPMNMIPTYIRR 627 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K G+E I +HP ++P+L T GV+IYQEQ+MQIA ++G+SL +ADVLRRA+ KK K Sbjct: 628 KRGEEAISYLHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEKAL 687 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + + +E F++G NG +A ++ + +FADYGFN+SHA +Y ++SY A++K HYP Sbjct: 688 LAEHREAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAHYP 747 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 + F A ++ + EK+ + +A + I ++PPSVN F V I LA +K Sbjct: 748 LCFYAVMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGEAIRAGLATVKH 807 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG+ I E + PF DF R+ K L R LE+L+ AGA D G R LL S Sbjct: 808 VGSAAKLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSLLAS 867 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 ++ ++ Q + E G S K + + R + E+ +LGF + Sbjct: 868 IEIAIEHVQLMRPYL----------EAGGLSLKPKYADAPPLSPAERRQREKELLGFAVT 917 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HP V +P+ + + A + G+ + + + ++ +T+ G + ++T S+ + Sbjct: 918 PHPAAVCRPLFQAV----RAVPAAEVHGSPVVVGGCIAELRKTRTKFGEEMAFITVSDES 973 Query: 1025 KEYEANFFP 1033 E EA FP Sbjct: 974 GELEAVAFP 982 >gi|229820885|ref|YP_002882411.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333] gi|229566798|gb|ACQ80649.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333] Length = 1190 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 400/1084 (36%), Positives = 594/1084 (54%), Gaps = 87/1084 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA + +++ ++ A Q A+AITD LF A +F ++A AAGI+PI Sbjct: 10 FVHLHVHTDYSMLDGAARVPDLVAEVKAQGQSAVAITDHGYLFGAYDFWKRARAAGIKPI 69 Query: 71 IGCQLDID----MQDNLKM-------TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IG + + QD ++ + L+ T G L + S + Sbjct: 70 IGLEAYVTPGTARQDRSRVRWGERDQVGDDVAGGGAYTHLTLVSETTAGMHNLFRMGS-L 128 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 L+ RI + ++GLI +G SG I A + + +FG Sbjct: 129 ASLEGYYFKPRIDRELMTRY-SDGLIAFSGCPSGEIQTRLRLGQWDEAVRAAAELQDIFG 187 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D Y+ L H ++ Q+++LA PLVATN+ ++ +ED AH++L+ V + Sbjct: 188 KDSFYIELMDHSLELEKRVAKQLMELAAHLGAPLVATNDLHYVRDEDEHAHELLLCVQSN 247 Query: 238 TVVSQK------DRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQV- 287 +++S +R ++ D +Y+++ +EM +F++LPEA +NT+ IA RC F QV Sbjct: 248 SLMSDPTYEQGGNRFALSGDGYYVRSSAEMRRLFAELPEACDNTLAIAERCEVEFTEQVG 307 Query: 288 ----HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 H P+ P E E KE E GL R + + +D Q+ + Sbjct: 308 RYMPHFPVPPG--EDEISLFVKEVER--------GLVSRFGE------HVPEDVAQQAKY 351 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E+ VI ++GY+L+VADFI WAK+N+I VGPGRGSGAGS+ AYA+ IT++DPL L+ Sbjct: 352 EIEVITSKGYAGYYLVVADFINWAKRNSIRVGPGRGSGAGSMAAYAMGITELDPLSNGLI 411 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+RMS+PDFDIDF + RR EVIRYV KYG E VA I+T+G+++AK +L+D GR Sbjct: 412 FERFLNPERMSLPDFDIDFDERRRGEVIRYVTQKYGEENVASIVTYGTIKAKQSLKDSGR 471 Query: 464 ALQMPYSQVDRLCKLIPNDPA---HPVSLQAIAD--DSRFREAR------LADPSVDRLL 512 L P++ ++L K +P PA VSL I D D R+ EA DP ++ Sbjct: 472 VLGYPFAMGEKLTKAMP--PALMGKDVSLSGIFDPEDKRYAEAAEFRTLYETDPDARKVT 529 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + ++ +EGL R HAAGI+I PL ++P+ R +TQ + E GL+K D Sbjct: 530 DAAKGIEGLKRQWGVHAAGIIISSEPLIDVIPIMRRDSDGAIITQIDFPAGEDLGLVKMD 589 Query: 573 FLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 FLGL+ LT+L+ +L + G K D+ + +P DD TY LL TLG+FQL+ SGMRQ Sbjct: 590 FLGLRNLTILEDALVNIGING-KPDVVIEDVPLDDAATYELLGRAETLGVFQLDGSGMRQ 648 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKE 684 L M+PD EDI A+ +LYRPGP+ ++ Y RKNG + IV IHP L P+ L Sbjct: 649 LLRLMRPDNFEDISAVGALYRPGPMGANSHTNYALRKNGLQDIVPIHPELAGPLEEVLGP 708 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+I+YQEQVM IAQ L+GY+L EAD+LRRAMGKK KE +DK+ F +G + G S+ Sbjct: 709 TYGLIVYQEQVMAIAQHLAGYTLGEADLLRRAMGKKKKEILDKEYVPFSNGMKERGYSEG 768 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 ++++L F+DY FNK+H+AAY +ISY TA++K +Y VE++AA +T D+ +K Sbjct: 769 AIKALWDVLVPFSDYAFNKAHSAAYGLISYWTAYLKVNYRVEYMAALLTSTRDDKDKSAL 828 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863 + + R I ++PP VN +F I + LAA++ VG I +A +K F Sbjct: 829 YLNECRHLGITVLPPDVNDSAANFTPVGEDIRFGLAAVRNVGANVVEAIAKAREEKGAFT 888 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 S DF +V + N+R +ESLV AGA D G++R LL + V++ Sbjct: 889 SFTDFLDKVPAVVCNKRTIESLVKAGAFDALGHTRRSLLLVHEQAVDAVIGVKRKEAEGQ 948 Query: 924 ENIFAHEKGTFSDKI-TLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 ++FA G D ++ F+VE + + E+++LG Y S HPL + +L Sbjct: 949 FDLFASLGGPADDAAGSVASFAVEIPDLPEWDKKQKLSFERQMLGLYVSDHPLAGVEHVL 1008 Query: 976 RKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + SVAT+ G+ + +A ++ S Q K +++G+ V + E Sbjct: 1009 TAAA----DVSVATLLADEARPDGSTVTIAGLITSLQVKVSKQGNPWAAVVIEDLEGSIE 1064 Query: 1029 ANFF 1032 FF Sbjct: 1065 VMFF 1068 >gi|269120359|ref|YP_003308536.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386] gi|268614237|gb|ACZ08605.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC 33386] Length = 1122 Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust. Identities = 366/979 (37%), Positives = 571/979 (58%), Gaps = 52/979 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ YSLLEG + LD+ +A+TDT +F +EF +KA GI+PI Sbjct: 6 FVHLKLHTEYSLLEGVGKIEEYLDRAKKLDIKQLAVTDTA-MFGVVEFYEKAFKKGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQSV 129 IG ++ +D ++G+ S+ LL GY+ L +L S + ++ + + Sbjct: 65 IGLEIFMD-----GFFSEGEY------SLTLLARNQTGYKNLCKLSSLSFSRFNRSRNKI 113 Query: 130 RICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186 R +E+ +EGL +L+GG + + + + + + FG+ YV + Sbjct: 114 R-----YEELKKHSEGLFILSGGINSELTESILTYKYSEFKNIITKLVQDFGEYFYVEVP 168 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R D+ + +++A VA N+ + + D +++++ T ++ ++ Sbjct: 169 AAERLKDKVK--LYIEMAEECNAEYVAANDVYYPNFGDSILQKIMISIKDGTKINSENTE 226 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D YLK+ +M FS +A+EN+++IAR C+ + P + E K Sbjct: 227 LKYNDLYLKSAEQMKENFSGYEKAIENSLKIARECNVSFEFDKFKFPEYNLPEG----KS 282 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E +R GL+ + + + +R ++EL++I +M ++GYF+IV DFI++ Sbjct: 283 ETEYIRELVYDGLKKKYGEPL------EEKITERAEYELDIINKMGYNGYFIIVWDFIKY 336 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N I VGPGRGS AGS+ +YAL IT++DP++++L+FERFLNP+R+SMPD DIDF Q++ Sbjct: 337 AKDNGIYVGPGRGSSAGSIVSYALNITEVDPIKYNLIFERFLNPERISMPDIDIDFDQEQ 396 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R++VI YV KYGHE+VA IITFG+L+A+AA+RDVGR L + +VD++ KLIP H Sbjct: 397 REQVIDYVVKKYGHEKVAHIITFGTLKARAAIRDVGRVLDINLKKVDKVAKLIP----HF 452 Query: 487 VSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ A+ + + +D V +++ S KLEG RHAS HAAG+VI L +P Sbjct: 453 SELEDAVKNVRELKTLYNSDSEVRDMIDYSLKLEGKVRHASVHAAGMVISKDVLDDEIPT 512 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604 Y D R+ TQ+ MK +E G++K DFLGLK LT+L+K+++ + +G + L IP D Sbjct: 513 YSDGRASFLSTQYQMKELEDLGILKMDFLGLKNLTILRKTMENIKITQGKVMVLDDIPLD 572 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662 D ETY +LT TLG+FQ ES G+R+ ++ M+ + EDI+AL++LYRPGP+ + +V + Sbjct: 573 DKETYKMLTAGDTLGVFQCESIGIRRLMQKMKIEKFEDIVALLALYRPGPLRSGMVDDFI 632 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN I H + +L ET GVI+YQEQV++I +L+ Y++ E D LRRAMGKKI Sbjct: 633 ASKNEGAAIKYPHEALIDVLSETYGVILYQEQVLKIVNVLANYTMGEGDSLRRAMGKKIP 692 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E M + +E FI A +N I+ A IF L+ KF+ YGF KSH+ AYA+++Y TA++KT+ Sbjct: 693 ELMAQNREVFIKRAVENNITPDKAEEIFNLIDKFSGYGFPKSHSVAYALVAYWTAYLKTN 752 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 Y EF AA+M+ EM N++++ F +AR ++++ P VN +F + I + L AI Sbjct: 753 YFKEFFAATMSTEMYNIDRLSLFINEARDKGVKVLLPDVNLSAYEFLAEKDGIRFGLLAI 812 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 K VG + ++E ++ FDS EDF + + LN++ LE+ VF+G+LD +R ++ Sbjct: 813 KHVGINIVKKVIEVRKNEKFDSYEDFVYNLKKEGLNKKQLEAFVFSGSLDKIHNNRKEMF 872 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-----SVRFENEQR 957 S+D + +W EK + N E++ G S KI L FS+E S S+ E E+ Sbjct: 873 SSIDRV---LEWCEK-KFNSEEDLQMILFGGKSQKIGL--FSMEKSEEYSESLLLEKEKE 926 Query: 958 VLGFYFSGHPLDVYKPILR 976 LG Y S HPLD YK ++R Sbjct: 927 FLGVYLSKHPLDNYKLLMR 945 >gi|50955139|ref|YP_062427.1| DNA polymerase III subunit alpha [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951621|gb|AAT89322.1| DNA polymerase III, alpha subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 1171 Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust. Identities = 391/1064 (36%), Positives = 585/1064 (54%), Gaps = 57/1064 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YS+L+GA + ++D PA+A+TD N+F A +F + A AGI+P Sbjct: 4 SFVHLHVHSEYSMLDGAARVKPLIDAAVEQGMPAVAVTDHGNMFGAFDFWRTAIDAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFP-----------TVPSIVLLVSTAEGYQRLIELVSR 118 IIG + + T++ + + + LL +T EG L + S Sbjct: 64 IIGTE--AYLTPGTHRTDKTRIRWGDGGGDDVSGSGAYTHMTLLAATTEGMHNLFRM-SS 120 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 + ++ R+ L + +G+I TG SG + + A+K F+ +F Sbjct: 121 LASIEGYYFKPRMDRELLSQY-AKGIIATTGCPSGEVQTRLRLGQYEEAKKAAAEFRDIF 179 Query: 179 G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G + Y + H G +R S +++LA LPLVATN+ + D ++H L+ V Sbjct: 180 GKENFYAEIMDHGLGIERRIMSDLIRLAKELGLPLVATNDLHYTHAADAKSHAALLCVQS 239 Query: 237 STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + + +R + D YLK +M +F D P+A +NT+ IA R A +PRF Sbjct: 240 GSTLDDPNRFKFDADEFYLKTSEQMRQLFRDHPDACDNTLTIAERVDVRFDTAANYMPRF 299 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + E+ + GL R + G + R++ D+E+ VI++M F G Sbjct: 300 PVPAGE----TEQTWFVKEVERGLAERYSNGVTP------EVRKQADYEIGVISQMGFPG 349 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPLR L+FERFLNPDR+SM Sbjct: 350 YFLVVADFINWSKDNGIRVGPGRGSGAGSMAAYAMRITDLDPLRHGLIFERFLNPDRVSM 409 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFD+DF RR EVI+YV +KYG ERVAQI+T+G+++AK AL+D R L P+ ++L Sbjct: 410 PDFDVDFDDRRRGEVIKYVTDKYGEERVAQIVTYGTIKAKQALKDSSRVLGFPFGMGEKL 469 Query: 476 CKLIPNDP-AHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEGLYRHAS 526 K +P + L I D R++EA +DP + + + LE L R Sbjct: 470 TKAMPPPVMGKDIPLTGIFDKQHPRYKEALDIRAVVESDPEAKTVFDTALGLENLKRQWG 529 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HAAG+++ PL ++P+ + + VTQF+ E GLIK DFLGL+ LT++ +L Sbjct: 530 VHAAGVIMSSDPLIDVIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDAL 589 Query: 587 DFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 D + A RG K+ L + DD Y LL+ TLG+FQL+ MR L M+PD EDI A Sbjct: 590 DNIEANRGEKLVLENLELDDRAAYELLSRGDTLGVFQLDGGPMRSLLRLMKPDNFEDISA 649 Query: 646 LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQVMQIA 699 L++LYRPGP+ ++ Y RKNG+++I IHP L P+ L + G+IIYQEQVM IA Sbjct: 650 LIALYRPGPMGANSHTNYALRKNGQQEITPIHPELAQPLQDILSTSYGLIIYQEQVMAIA 709 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q ++G+SL +AD+LRRAMGKK K E+DKQ E F G +NG S ++E+L F+DY Sbjct: 710 QKVAGFSLGQADILRRAMGKKKKSELDKQFEGFSQGMVENGYSVAAVNKLWEILLPFSDY 769 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY VISY TA++K HYP E++AA +T D+ +K+ + + R+ I+++PP Sbjct: 770 AFNKAHSAAYGVISYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIEVLPP 829 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878 VN + F I + + A++ VG + EA + F+S DF SRV N Sbjct: 830 DVNESSLYFAAVGEDIRFGMGAVRNVGANVVEGVREARESSGRFESFHDFLSRVPVHAAN 889 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN-----KHENIFAHEKGT 933 +R +ESL+ AGA D GY+R L++ ++ + A ++++ N ++++ ++ Sbjct: 890 KRTVESLIKAGAFDSLGYTRRALVEVHEDAVESAVKIKRSEANGDVGFDFDSLWGDDEPN 949 Query: 934 FSDKITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990 S E+ V+ + FE E +LG Y S HPL + L K+ + VA T+ Sbjct: 950 RSQHHIPERPEWVKRDKLAFERE--MLGLYVSDHPLAGLELHLAKLASTSIADLVASETV 1007 Query: 991 R-GNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFF 1032 + G + +A +V S Q + + G++ G + + E A F Sbjct: 1008 QDGETVVIAGLVTSVQHRVAKASGNQYGMIQVEDFGGEMTAMFM 1051 >gi|254824367|ref|ZP_05229368.1| DNA polymerase III [Listeria monocytogenes FSL J1-194] gi|293593601|gb|EFG01362.1| DNA polymerase III [Listeria monocytogenes FSL J1-194] Length = 1108 Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust. Identities = 373/1032 (36%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ EM + E A T E+A RC + + +LPRF E + Sbjct: 226 PN-YFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R GA +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 282 -DVLRQTAFAGLKERNLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F+V ++ I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|227494658|ref|ZP_03924974.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] gi|226831840|gb|EEH64223.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] Length = 1176 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 371/1074 (34%), Positives = 588/1074 (54%), Gaps = 76/1074 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YS+L+GA + ++ + A +QPA+AITD LF A EF +A AGI+PI Sbjct: 7 FVHLHNHTEYSMLDGASKIAPMVKEAARLEQPALAITDHGYLFGAYEFYSEARKAGIKPI 66 Query: 71 IGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 IG + + + Q + ++ +G + LL T EG L Sbjct: 67 IGLEAYVTPGTSRFDRTRVRWGEEWQASDDVSARG-----AYTHLTLLAETTEGMHNLFR 121 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S L Q + R + L++ ++GLI TG S + A + Sbjct: 122 LGSMASLDGQWGKWPRADMELLEQY-SKGLIAFTGCPSSEVQTRMRLGQWDKAVEAAGRL 180 Query: 175 KKLFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + +FG + ++V H G D + + +++L+ +P+V TN++ +++ +D + D L Sbjct: 181 QDVFGKENVFVEFMDH-GIDIEKRTRADLIKLSNQLNIPMVVTNDAHYVTADDRDIQDAL 239 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + + + DR + +Y+++ M + D+P+A +NT+ IA RC+ Sbjct: 240 LCINSGVTLDTPDRFKFDGSGYYIRSSESMRRDWEDIPQACDNTLLIAERCNVEFTEGVS 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 +PRF E +D E + + GL +R QG + R++ D+E+ +I + Sbjct: 300 YMPRFPVPEGED----ETSWFIKEVERGLHIRFPQGI------PDNVRKQADYEVGIINQ 349 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 MKF GYFL+V+DFI+WAKK I VGPGRGSGAGS+ AYA+ ITD++PL LLFERFLNP Sbjct: 350 MKFPGYFLVVSDFIRWAKKQGIRVGPGRGSGAGSMVAYAMQITDLNPLDHGLLFERFLNP 409 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFD+DF + RR EVI YV KYG +RVAQ++T+G ++AK AL+D R L PY+ Sbjct: 410 ERVSMPDFDVDFDERRRGEVIEYVTRKYGDDRVAQVVTYGKIKAKQALKDSCRVLGRPYA 469 Query: 471 QVDRLCKLIPNDP-AHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGL 521 ++L K +P + + I D + FR +P ++++++ LEGL Sbjct: 470 LGEQLTKAMPPSVMGKDIPVSGIFDKEHKRYEEAAEFRRYYNENPETHPIVDMAKGLEGL 529 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA +++ PL Q++P+ + + +TQF+ E GL+K DFLGL+ LT+ Sbjct: 530 TRQWGVHACAVIMSSVPLQQVIPLMQRPQDGATITQFDYPTCESLGLLKMDFLGLRNLTV 589 Query: 582 LQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +LD + + G + D+ + +D +TY LL+ TLG+FQL+ GM++ L+ M PD Sbjct: 590 ISDALDNIERNGKERPDIDHVELNDPKTYQLLSAGETLGVFQLDGDGMQKLLKRMAPDNF 649 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQ 694 EDI A+ +LYRPGP+ D+ Y +RKNG+ +I IHP + LKE T G+I+YQEQ Sbjct: 650 EDISAVGALYRPGPMGADSHNKYADRKNGRAEIEPIHPELAEPLKEILGTTYGLIVYQEQ 709 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM IAQ ++GYSL +AD+LRRAMGKK KE +DK+ F +G + G S+ ++E+L Sbjct: 710 VMAIAQKVAGYSLGQADLLRRAMGKKKKEILDKEYVPFHAGMIERGYSEDCIKTLWEILV 769 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F++Y FNKSH+AAY ++SY TAW+K +YPVE++A+ +T + DN +K+ + + R+ I Sbjct: 770 PFSNYAFNKSHSAAYGLVSYMTAWLKANYPVEYMASLLTSQKDNKDKLALYLSECRRMGI 829 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 ++PP VN +F N I + LAAI+ VG I+EA +K +DS F +V Sbjct: 830 TVLPPDVNVSEANFTAVGNDIRFGLAAIRNVGINVVEGIVEARKEKGKYDSFASFLDKVP 889 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 N+R +ESL+ +GA D R L+ + + A +++N ++F G Sbjct: 890 VAVCNKRTIESLIKSGAFDSVADCRRALVAVHEEAVESAVKLKRNEAAGQFDLF----GA 945 Query: 934 FSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 D ++ +V+ ++ + +E+ +LG Y S HPL + L + +E Sbjct: 946 MFDSAEVQMMTVDVPNMPDWPKHEKLSHERDMLGLYVSDHPLSGIQKALERY----QDEQ 1001 Query: 987 VATIRGNN-------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +A I + +++A ++ + K TRKG T + + + FFP Sbjct: 1002 IAQILTSETSRDRQMVKVAGLITAVTIKTTRKGELWAIATLEDLSGSIDLLFFP 1055 >gi|325108084|ref|YP_004269152.1| DNA polymerase III subunit alpha [Planctomyces brasiliensis DSM 5305] gi|324968352|gb|ADY59130.1| DNA polymerase III, alpha subunit [Planctomyces brasiliensis DSM 5305] Length = 1172 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 375/1025 (36%), Positives = 569/1025 (55%), Gaps = 39/1025 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F HL HS YSLL+GA + +++K ++AITD NLF ALEF +K GI Sbjct: 9 SQPFAHLHCHSHYSLLDGANRIPAMIEKCKTHGMNSLAITDHGNLFGALEFYEKCRGGGI 68 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 PIIG + I K T++ + + LL + G++ L+++ S+ YL +G Sbjct: 69 NPIIGYEAYIAPG---KRTDRSASRMKEASFHLTLLATNQVGFKNLVKMASKAYL--EGF 123 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 L E EG+I L+G +S + + + AE+ L ++K FGDRLY+ + Sbjct: 124 YYKPRIDKDLLEAHNEGIICLSGCASSELSHLLLTDQQEQAEQLLRWYEKTFGDRLYLEI 183 Query: 187 QRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Q G ++ + ++LA PLVATN++ +L++ D AHD+L+ V + V+ + Sbjct: 184 Q-DSGVQIQKDCMERTIELADRFGFPLVATNDAHYLNQGDAPAHDILLCVNTRSTVNDAN 242 Query: 245 RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R ++ + +L+ EM + F P+A+ + EIA RC L + P F Sbjct: 243 RMQLDGCEFHLRTPEEMYNAFPHCPDAVARSQEIADRCDIELDLTTRHFPVFDPPP---- 298 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 K + LR+ GL+ R Q Y RLD EL VI +M +S YFLIV DF Sbjct: 299 GKTDVQYLRDLCEEGLKWRYGDQP------DQVYYDRLDKELGVIEKMGYSSYFLIVWDF 352 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++A+ IP RGS G++ AY L ++D+ P+++ LLFERFL+P R PD DIDFC Sbjct: 353 ARFARDKGIPC-TARGSACGAIVAYLLGLSDVCPIQYDLLFERFLDPSRSEAPDIDIDFC 411 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +DRR VI +V+ KYG VAQI TFG+L+AK ALRDV RAL +P ++V+ + K+IP D Sbjct: 412 RDRRQWVIDFVKEKYGEASVAQIGTFGTLKAKNALRDVARALDVPLARVNEVAKMIP-DT 470 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + A+ +E D + +++ + LEGL R+ THAAG+VIGD+PL + V Sbjct: 471 LNIKLKDAVDSTPELKEQYDQDRQIREVIDFAMALEGLARNVGTHAAGVVIGDQPLDEYV 530 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI-- 601 P+ R +TQ+ +EKAGL+K DFLGL+ L++L K++ + + ++ I Sbjct: 531 PLQRITGKTDIITQWTD--VEKAGLLKMDFLGLRNLSILDKAVKNVRENNPDFNMRPIDF 588 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IV 659 P DD ET+ LL T GIFQLES GMR L M+PD DIIA +LYRPGP++ ++ Sbjct: 589 PLDDKETFALLQRGETKGIFQLESGGMRDLLTKMKPDKFADIIATSALYRPGPLEGGMVM 648 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y K+G++ + ++HP++D +L ET GV++YQEQVM+I + G LS A +A+ K Sbjct: 649 TYVEVKHGRQPVPTVHPIVDEVLAETYGVMVYQEQVMRILNRVGGIELSSAYRCIKAISK 708 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K E + E F+ G+ KN + K +A ++EL+ KFA YGFNKSH+ AY I+YQTA++ Sbjct: 709 KKLEMIAAFHEEFLEGSQKNDMDKKVAQELWELIEKFAGYGFNKSHSTAYGAIAYQTAYL 768 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP EF+AA ++ M++ E+I + D R+ I I+PP +NT VDF+V I + + Sbjct: 769 KAHYPKEFMAALLSCGMESSERIAEHIDDCRRMKITILPPDINTSEVDFRVAGENIAFGM 828 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKGVG + + ++ E A+ P+ S+ D C RVD K + + LE+L+ AGALD FG +R Sbjct: 829 GAIKGVGESAVQAVVDEREANGPYKSIFDLCERVDPKAMTKGNLETLIKAGALDSFGPNR 888 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE-------NSSVR 951 Q +++ + A K++ ++F G T+E+ + S + Sbjct: 889 EQHTLAVEMAVQMAARKHKDKLRGQRSLFGGGGGGDE---TVEELAATVPEAPDWTHSQK 945 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 E+ V GFY + HPL + + + +E + L M+ + ++ T+ Sbjct: 946 LNIEKEVFGFYLTSHPLTEFADQITPLCSHTTKELAEAEDQIEVILGGMISAIKKATTKN 1005 Query: 1012 GSRIG 1016 SR G Sbjct: 1006 PSRNG 1010 >gi|196249927|ref|ZP_03148622.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] gi|196210441|gb|EDY05205.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] Length = 1093 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 377/1029 (36%), Positives = 583/1029 (56%), Gaps = 55/1029 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL V S YSL + ++ ++ K A+A+TD L+ A+ F ++ G++P Sbjct: 2 TFVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQRHGLRP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG D+ + + FP +VLL + EGY+ LIE+ + + Q ++ Sbjct: 62 IIGMMADVVLDGD-------SGAFP----LVLLAANEEGYRHLIEISTAV----QMREEK 106 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR--LLTFKKLFGDRLYVNLQ 187 + + L+ + + G+I +T G +G ++ F + +VA+ + LL +++LF RLY+ +Q Sbjct: 107 HVHEAALRRL-SGGIIAITPGLNGRVES--FLAAGEVAQAKETLLRYRQLFAGRLYIAIQ 163 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R ES +++LA +P+VATN ++ ED A L A+ ++ Sbjct: 164 RGERTRAPYESALLRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGVPLAHIPE-- 221 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YL EM F+DLPEALEN++ IA +C ++ LP+F + + Sbjct: 222 -EDERYLAALDEMARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGET----A 276 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQ 365 ++ LR RL + +A+ + D YR+RL+ EL++I M+FS YFLIVAD + Sbjct: 277 DSYLR---------RLCEQGLARRVPSADARYRERLEHELHIIQTMRFSDYFLIVADVLA 327 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++ I GPGRGS AGS+ AYAL+ITD+DP+ + LLFERFLNP+R+S+PD D+DF D Sbjct: 328 YARQRGILTGPGRGSAAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFPDD 387 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYV YG + VAQIITFG+ AKAALR+ + L + + +R+ L+PN Sbjct: 388 RREEVIRYVVETYGRDHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQGV 447 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +S Q + + FR A A P +R L I++KLEGL RH S HAAG++I PL + VP+ Sbjct: 448 TIS-QWHRESAAFRRALRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHVPL 506 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604 + + P+TQ+ M +E GL+K DFLGL+TLTLL + + + Q G D+ +P D Sbjct: 507 -QPSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGKPFDVRALPLD 565 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY LL+ T G+FQLESSGM++ L ++P +E+I+A+ +LYRPGP++ I Y R Sbjct: 566 DEKTYALLSAGDTSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPMNMIPTYIRR 625 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K G+E I +HP ++P+L T GV+IYQEQ+MQIA ++G+SL +ADVLRRA+ KK K Sbjct: 626 KRGEEAISYLHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEKAL 685 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + + +E F++G NG +A ++ + +FADYGFN+SHA +Y ++SY A++K HYP Sbjct: 686 LAEHREAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAHYP 745 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 + F A ++ + EK+ + +A + I ++PPSVN F V I LA +K Sbjct: 746 LCFYAVMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGEAIRAGLATVKH 805 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG+ I E + PF DF R+ K L R LE+L+ AGA D G R LL S Sbjct: 806 VGSAAKLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSLLAS 865 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 ++ ++ Q + E G S K + R + E+ +LGF + Sbjct: 866 IEIAIEHVQLMRPYL----------EAGGLSLKPKYADAPPLSPDERRQREKELLGFAVT 915 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HP V +P+ + + A + G+ + + + ++ +T+ G + ++T S+ + Sbjct: 916 PHPAAVCRPLFQAV----RAVPAAEVHGSPVVVGGCIAELRKTRTKFGEEMAFITVSDES 971 Query: 1025 KEYEANFFP 1033 E EA FP Sbjct: 972 GELEAVAFP 980 >gi|290894457|ref|ZP_06557416.1| DNA polymerase III [Listeria monocytogenes FSL J2-071] gi|290555995|gb|EFD89550.1| DNA polymerase III [Listeria monocytogenes FSL J2-071] Length = 1108 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 373/1032 (36%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + A + +FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N +L +D +A +VL A+ + V P Sbjct: 169 ---NPRLFAKIETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIF-SDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ EM + +D + A T E+A RC + + +LPRF KE + Sbjct: 226 PN-YFTSQEEMERDWQTDFEKRACLETGELAERCHVEIALDQHLLPRFPLKEGQN----A 280 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A GL+ R GA +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 281 PDVLRQTAYDGLKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ + GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F+V ++ I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|256544919|ref|ZP_05472290.1| DNA polymerase III alpha subunit [Anaerococcus vaginalis ATCC 51170] gi|256399418|gb|EEU13024.1| DNA polymerase III alpha subunit [Anaerococcus vaginalis ATCC 51170] Length = 1149 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 370/1058 (34%), Positives = 585/1058 (55%), Gaps = 55/1058 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + +F HL +H+ YSLL+G ++ +++K+ + AITD N++ +EF +K A I Sbjct: 2 TNNFTHLHLHTEYSLLDGFTKIDKLMEKLKEFGMDSCAITDHGNMYGVIEFYKKCQANNI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC++ I D T Q K + ++LL GY+ L+++VS+ Y QG Sbjct: 62 KPIIGCEVYICENDYKIKTPQNKRYY----HLILLAKNNNGYKNLLKIVSKAYT--QGYY 115 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 RI L+E E LI L+ +G I++ N + A + LFG + Y+ Sbjct: 116 YKPRIDFEVLKEY-KEDLIGLSACLNGEINQRILENDIKKAYSTAKKYLDLFGKENFYLE 174 Query: 186 LQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H ++ + ++V+ ++ ++ LV TN+ ++ + D DVL + +++ ++ Sbjct: 175 VQYHGLKEQKKVNEVLLRIHKDLDIELVCTNDVHYVEKNDAFYQDVLSCIQTGSLLEDEN 234 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R ++ D YLK+ M IF + P A ENT +I+ C+ L+ H P LP F + D Sbjct: 235 RMKMPVDEFYLKDSQMMEEIFKEFPRAFENTQKISAMCNVSLEFHNPHLPYFTKLPKDTT 294 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGYFLIVA 361 E L++ + +G I K Y D + +R E++VI M + YFLIV Sbjct: 295 NLEY-----------LKILVKEGLIKK-YKNLDEKIIKRAKKEIDVINNMGYVDYFLIVW 342 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+++AK N I VGPGRGS AGS+ +YAL IT IDPL++ LLFERFLNP+R+SMPD DID Sbjct: 343 DFVKYAKDNKIAVGPGRGSAAGSIVSYALDITQIDPLKYDLLFERFLNPERVSMPDIDID 402 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RD+V+ YV YG + V+QI+TFG +QA+ A+RDVGR + + Y++VD++ KLIP Sbjct: 403 FCYENRDKVVEYVYELYGRDHVSQIVTFGRMQARNAIRDVGRVMNISYNKVDKIAKLIPQ 462 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ + D R+++ ++ +E L RH S HAAG+VI L+ Sbjct: 463 AIGMTID-KALDSTEKLAYEYQNDVETKRMIDTARNIEALPRHTSIHAAGVVISKEILTD 521 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSL 600 +VP+ + +D VTQFNM IE+ GL+K DFLGL+ LT++Q ++ D + +++DL Sbjct: 522 IVPLA--LSNDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDIKKNKNIEIDLGA 579 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I +D + T T+GIFQ ES+GMR L+ ++P +D++A SL+RPGP+D I Sbjct: 580 IDENDPKVISQFTKAETVGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPGPMDQIPN 639 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y K + I I + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD LRRAM KK Sbjct: 640 YIKNKINPQNISYIDDALKPILEVTYGIIVYQEQVMQIVQKLAGFSLGEADNLRRAMSKK 699 Query: 721 IKEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 M+ +E F+ G NGIS+ A I++ + FA Y FNKSH+AA Sbjct: 700 KMSVMEANREIFVHGKKNQNGEYEVIGCVNNGISEINANKIYDEMISFAKYAFNKSHSAA 759 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++ QTA++K ++ E++A +T M N K+ + +A++ I+I+PP++N F Sbjct: 760 YSLVAIQTAFLKYYFKEEYMANLLTSIMGNSSKVYLYISEAKRLGIKIVPPNINKSKRRF 819 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESL 885 +N I + L+AIK VG I+ +K F S +DF R+ D LN++ LESL Sbjct: 820 IASENEIVFGLSAIKNVGENLIDLIVNLRKEKNFKSFKDFLERIEANDPTVLNKKALESL 879 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKF 943 + AG DC GY R +L+ + + EK N+ F K D I Sbjct: 880 IKAGVFDCMGYKRSELMAVHETALQSIHDNEKVNLKGQMNLLDFDQNKEEIIDDIKFPPV 939 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--------GNNI 995 + + + + E+ VLGFY S HPL+ L+ + E ++ +R ++ Sbjct: 940 NEYKNKQKLKLEKEVLGFYISDHPLNSLGNNLKNY-VNFTTEILSELRPVDLDKFDNKSV 998 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 R+A ++ +K + T+K + + + + + + + FP Sbjct: 999 RMAGIITNKSETMTKKSTLMAFCSLEDMSGSIDMIIFP 1036 >gi|254992099|ref|ZP_05274289.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes FSL J2-064] Length = 1108 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 372/1032 (36%), Positives = 590/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ EM + E A T E+A RC + + +LPRF E + Sbjct: 226 PN-YFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 282 -DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F+V ++ I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|254852197|ref|ZP_05241545.1| DNA polymerase III [Listeria monocytogenes FSL R2-503] gi|258605503|gb|EEW18111.1| DNA polymerase III [Listeria monocytogenes FSL R2-503] Length = 1108 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 371/1032 (35%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ +M + E A T E+A RC + + +LPRF E + Sbjct: 226 PN-YFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 282 -DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GPGRGS AGS+ +YAL+ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGILTGPGRGSAAGSLVSYALSITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F+V ++ I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|46907805|ref|YP_014194.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b F2365] gi|46881074|gb|AAT04371.1| DNA polymerase III, alpha subunit [Listeria monocytogenes serotype 4b str. F2365] Length = 1108 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 371/1032 (35%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ +M + E A T E+A RC + ++ +LPRF E + Sbjct: 226 PN-YFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALNQHLLPRFPLNEGQNAS--- 281 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 282 -DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F+V ++ I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|254931514|ref|ZP_05264873.1| DNA polymerase III [Listeria monocytogenes HPB2262] gi|293583067|gb|EFF95099.1| DNA polymerase III [Listeria monocytogenes HPB2262] gi|328474924|gb|EGF45724.1| DNA polymerase III, alpha subunit [Listeria monocytogenes 220] Length = 1108 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 371/1032 (35%), Positives = 590/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ EM + E A T E+A RC + + +LPRF E + Sbjct: 226 PN-YFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 282 -DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GPGRGS AG++ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGILTGPGRGSAAGALVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F+V ++ I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|117928262|ref|YP_872813.1| DNA polymerase III subunit alpha [Acidothermus cellulolyticus 11B] gi|117648725|gb|ABK52827.1| DNA polymerase III, alpha subunit [Acidothermus cellulolyticus 11B] Length = 1190 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 392/1075 (36%), Positives = 589/1075 (54%), Gaps = 81/1075 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA + ++L + A PAIA+TD N++ A +F ++A A GI P Sbjct: 24 SFVHLHVHTEYSMLDGAARIKDLLAETVAMGAPAIAMTDHGNVYGAYDFYKQARACGINP 83 Query: 70 IIGCQLDID-------MQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + + +L G + I LL +G L L S + Sbjct: 84 IIGMEGYLAPGSRFDRRRVSLATAGPGDENAGEMYTHITLLAENTDGMHNLFRL-SSLAS 142 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180 L+ R+ L +G+I TG S ++R A + ++ +FG + Sbjct: 143 LEGFYYKPRMDRELLATY-AKGIIATTGCPSSEVNRLLQQGKYAAARQAAAEYRDIFGAE 201 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y L H +R +++LA LPL+ATN+ + +D+EAH+VL+ V Sbjct: 202 NFYCELMDHGLEIERRVRDDLLRLARELRLPLLATNDLHYTYAQDWEAHEVLLCVQTGKT 261 Query: 240 VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ +R + + YLK ++M +F DLPEA +NT+ IA R A ++PRF Sbjct: 262 LADPNRFKFDAKEFYLKTPAQMRELFRDLPEACDNTLAIAERVHVEFAEGANLMPRFPVP 321 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + EE+ L + AGL R G YR+R ++EL VI +M F GYFL Sbjct: 322 PGE----TEESWLVKEVEAGLHRRFPSGV------PDAYRERAEYELTVICQMGFPGYFL 371 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 +VAD +++AK+N I VGPGRGS AGS+ AYAL IT++DP++ LLFERFLNP+R+SMPD Sbjct: 372 VVADLVRYAKENGIRVGPGRGSAAGSMVAYALGITELDPIKHKLLFERFLNPERVSMPDI 431 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF + RR ++IRY KY + VAQIIT+G+++AK A++D R L PY+ DR+ KL Sbjct: 432 DIDFDERRRGDMIRYATQKYREDHVAQIITYGTIKAKQAIKDSARVLGYPYAISDRITKL 491 Query: 479 IPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525 +P DP+HP +A + FR DP V ++++ ++ LEGL R Sbjct: 492 MPPALMGRDLSLAAIFDPSHPRYAEA----AEFRAVYENDPDVRKIVDTARNLEGLKRQW 547 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 HAAG+++ PL ++P+ R + +TQF+M E GL+K DFLGL+ LT+L Sbjct: 548 GVHAAGVILSREPLLDVIPIQRREQDGAIITQFDMGACEALGLLKMDFLGLRNLTVLDDC 607 Query: 586 LDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 L + A RG+ + L +P DD TY LL TLG+FQL+ MR L M+PD EDI Sbjct: 608 LAGIKANRGIDLVLEEVPLDDPATYELLQRGETLGVFQLDGGPMRALLRSMRPDNFEDIS 667 Query: 645 ALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQVMQI 698 A+++LYRPGP+ + + Y +RKNG++ + IHP L +P+ L +T GVI+YQEQV+ I Sbjct: 668 AVLALYRPGPMGANAHIEYADRKNGRKPVEPIHPELAEPLADILDDTYGVIVYQEQVIAI 727 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ ++GYSL +AD+LRRAMGKK KE +DK+ F G KNG S+ ++E+L F+D Sbjct: 728 AQRVAGYSLGQADLLRRAMGKKKKEILDKEYIPFSEGMRKNGYSEDAIRTLWEILVPFSD 787 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 Y FNK+H A Y ++SY TA++K +YP E++AA +T D+ EK + + R+ I+++P Sbjct: 788 YAFNKAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVKDDKEKSALYLHECRRMGIRVLP 847 Query: 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKL 877 P VN +F + I + L+A++ VG I+E K F DF ++V+ Sbjct: 848 PDVNESDTNFTPRGDDIRFGLSAVRNVGENVVASIIETRRSKGRFTDFFDFLAKVEPVVC 907 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-- 935 N++V+ESL+ AGA D G++R LL +A+ V+ K AH G F Sbjct: 908 NKKVVESLIKAGAFDSLGHTRRGLLAV------HAEVVDSVMETKR----AHAVGQFDLF 957 Query: 936 -------DKITLEKFSVENSS----VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 + +++ + + + V E+ +LG Y S HPL + +L ++ + Sbjct: 958 GSAADAPEAVSIVRRPISDEEWEKPVLLAAEREMLGLYVSDHPLLGVEHVLARL----VD 1013 Query: 985 ESVATIR------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 S+A + G I + +VVS ++ TR+GS VT + E FP Sbjct: 1014 CSIAALTDDERPDGAQITIGGIVVSLTRRVTRQGSPWAVVTLEDLDGSIEVLVFP 1068 >gi|119357011|ref|YP_911655.1| DNA polymerase III, alpha subunit [Chlorobium phaeobacteroides DSM 266] gi|119354360|gb|ABL65231.1| DNA polymerase III, alpha subunit [Chlorobium phaeobacteroides DSM 266] Length = 1190 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 378/1013 (37%), Positives = 565/1013 (55%), Gaps = 64/1013 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+ + + + +IA+TD F+ E +A AGI+ + Sbjct: 3 FVHLHVHTHYSMQSSPVFPAELFSACSRFGMKSIAVTDYCAAFNMPELFAEAENAGIKLV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG +L + L+ + +T PS++LLV EGY+ L L+SR D + Sbjct: 63 IGTELYL-----LESASHHQTRHTVSPSLILLVQNDEGYRHLCILLSRA-AKDGFINGMP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 S L E GLI L+G SSG I +A + + AE + +K +FGD Y+ LQ HR Sbjct: 117 HIESSLLEACHGGLIALSGYSSGRIGKALLSGAQEEAESFVRYYKSVFGDNFYLELQNHR 176 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRV 248 +D + +A + + LVATNN +L +D + ++A + SQ + Sbjct: 177 MPFDDELRKATIAIAEKYAVELVATNNVHYLERKDAGCYRAMVANRTKEKLSSQNLQAHA 236 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH-APILPRFIEKECDDIQKEE 307 ++YLK+ EM +F D+ +AL NTV I+ +C++ + PILP F E +E Sbjct: 237 ESEYYLKSPEEMAMLFPDISKALTNTVIISDKCTYAFKKKDHPILPHFHLPEG---FSDE 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR+ G + + A A G ++D R++ EL VI +M FS YFLIV+D I + Sbjct: 294 AAYLRHLTWEGAKEKYADSG-ADGISSEDVEARIELELGVIEKMGFSSYFLIVSDLIAAS 352 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R SMPD DIDF + Sbjct: 353 RRLGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERSSMPDIDIDFTPVGK 412 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +V+ Y KYG E VA++I G+L AKAA+RD GR L++P VDRL KL+P P + Sbjct: 413 QKVLEYTVEKYGSESVAKVIAIGTLGAKAAIRDAGRVLEVPLPVVDRLAKLVPTKPG--I 470 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +L+ AI++ ++ + P LL+ ++ LEG R+ S HA +VI PL + VP+Y Sbjct: 471 TLEKAISEVRELKQFVESSPQTRELLDYARALEGRARNVSMHAGAVVITAGPLEEQVPLY 530 Query: 547 ------RDVRS-----DLP------------------VTQFNMKWIEKAGLIKFDFLGLK 577 +VR DL VTQF+ WIEKAGL+K D LGL+ Sbjct: 531 VSNKIETEVRKYADELDLGEPDPVVSKTAEVADEKQVVTQFDKNWIEKAGLLKIDLLGLE 590 Query: 578 TLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 TL ++ ++L + +R + ++L +P +D +T+ + GIFQ ESSGM+ + +Q Sbjct: 591 TLAVIDETLRLIQRRHQRTIELEKLPMNDRKTFRIFQEGKMAGIFQFESSGMQNYMTRLQ 650 Query: 637 PDCIEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 P I DIIA+ +LYRPG ++ N V ++ +RK+G+E I +HP+++ +LKET GV Sbjct: 651 PTQIGDIIAMSALYRPGALNARIDDHRNAVDLFVDRKHGREAIDYMHPMLEIILKETYGV 710 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQVMQI+Q++ G+SL++AD LR+AMGKK E M K +E FI GA G+ +A Sbjct: 711 IVYQEQVMQISQVMGGFSLAKADDLRKAMGKKKPEIMSKYEEDFIKGAVAQGVHDALARR 770 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 +F L+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A + E+ ++E++K + Sbjct: 771 VFTLMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAILNSEIGDIERMKHLTDE 830 Query: 809 ARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKP--F 862 A+ F I +PPS+N F V G I L+AIK VG AR I+ + K F Sbjct: 831 AKSFGIATLPPSINKSDTLFSVEEHNGKASIRVGLSAIKQVG-GAARAIVTSRMRKKREF 889 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 +L D + +D + +NR+ LE L+ +GALD R +L+ ++D K+ Q ++ T Sbjct: 890 INLFDLTASLDLRLMNRKALECLILSGALDEIDEHRARLIANIDKAIKFGQVQNRSVTLG 949 Query: 923 HENIFAHEKGTFSDKITLEKFSVEN---SSVRFENEQRVLGFYFSGHPLDVYK 972 F E G + I + S + +E++++GFY S HPL Y+ Sbjct: 950 QCGFFTSEHGGVMEDIHYPDMDPADPMPDSEKLLHEKKLVGFYLSRHPLSTYR 1002 >gi|47094219|ref|ZP_00231932.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b H7858] gi|226224175|ref|YP_002758282.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes Clip81459] gi|47017408|gb|EAL08228.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b H7858] gi|225876637|emb|CAS05346.1| Putative DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465072|gb|EGF36346.1| DNA polymerase III, alpha subunit [Listeria monocytogenes 1816] Length = 1108 Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust. Identities = 371/1032 (35%), Positives = 590/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ +M + E A T E+A RC + + +LPRF E + Sbjct: 226 PN-YFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 282 -DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F+V ++ I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|47096787|ref|ZP_00234369.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 1/2a F6854] gi|254898259|ref|ZP_05258183.1| hypothetical protein LmonJ_00550 [Listeria monocytogenes J0161] gi|254912248|ref|ZP_05262260.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254936575|ref|ZP_05268272.1| DNA polymerase III [Listeria monocytogenes F6900] gi|47014820|gb|EAL05771.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 1/2a F6854] gi|258609171|gb|EEW21779.1| DNA polymerase III [Listeria monocytogenes F6900] gi|293590225|gb|EFF98559.1| DNA polymerase III [Listeria monocytogenes J2818] Length = 1108 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 370/1032 (35%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY +L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHQLLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ ++ LI+++ G+ G I+R + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N +L +D +A +VL A+ + V P Sbjct: 169 ---NPRLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ EM + E A T E+A RC + + +LPRF E + Sbjct: 226 PN-YFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPLNEGQNAS--- 281 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 282 -DVLRQTAFAGLKERNLLG--------MEYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ + GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + +L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S+ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F++ + I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|167768149|ref|ZP_02440202.1| hypothetical protein CLOSS21_02705 [Clostridium sp. SS2/1] gi|317499630|ref|ZP_07957892.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] gi|167709673|gb|EDS20252.1| hypothetical protein CLOSS21_02705 [Clostridium sp. SS2/1] gi|291560175|emb|CBL38975.1| DNA polymerase III catalytic subunit, DnaE type [butyrate-producing bacterium SSC/2] gi|316893105|gb|EFV15325.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] Length = 1151 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 372/979 (37%), Positives = 567/979 (57%), Gaps = 41/979 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + ++ + +IAITD ++ ++F + A A GI+P Sbjct: 2 SFTHLHVHTEYSLLDGSSKIKELVHQAKELGMDSIAITDHGAMYGVIDFYRAAKAEGIKP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIGC++ + K +QG + +VLL GY L+++VSR + + Sbjct: 62 IIGCEIYVTTGSRFDKEASQGDKRYY---HLVLLAQNDTGYHNLMKIVSRGFT-EGFYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 R+ L+E EGLI L+ +G + N+ + A+ L + LFG D ++ LQ Sbjct: 118 PRVDYEVLEEY-KEGLIALSACLAGEVATYIRENNYEKAKNTALRLQDLFGKDNFFLELQ 176 Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H D+ + + +++++ + LVATN+ + +ED EAHD+L+ + V +DR Sbjct: 177 DHGIPDQTKVNTALLKMSKETGIDLVATNDIHYTFKEDAEAHDILLCIQTGKKVQDEDRM 236 Query: 247 RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R +YLK+ EM +F EA+ENT +IA+RC+ + +P + E Sbjct: 237 RYEGGQYYLKSPEEMQRLFPYAREAIENTGKIAKRCNVEIVFGEQKVPEYDVPEG----- 291 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADF 363 AV L L + + + Y ++ R+RLD+EL I M + YFLIV DF Sbjct: 292 -------YTAVTYLN-HLCEEGLKRRYPNITKELRERLDYELKTIENMGYVDYFLIVWDF 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +AK++ I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD D+DFC Sbjct: 344 IHYAKEHGIAVGPGRGSAAGSIVSYCLEITDIDPIRYQLLFERFLNPERVSMPDIDVDFC 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+ Sbjct: 404 YERRQEVIDYVVRKYGKDQVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGISKMVPNEL 463 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ R A D L+++S++LEGL RHAS HAAG+VIG + + V Sbjct: 464 NITID-KALKISKDLRNAYEQDEETHYLIDMSKRLEGLPRHASMHAAGVVIGKTAIDEYV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+ + VTQF M IE+ GL+K DFLGL+TLT++Q + + ++ D++ I Sbjct: 523 PLATGA-DNAAVTQFTMTTIEELGLLKMDFLGLRTLTVIQDAEKMVRRKVPDFDITKIDP 581 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 D E Y ++ T G+FQLESSGM+ ++ ++P +EDIIA +SLYRPGP+D I Y Sbjct: 582 TDKEVYEMIGNGHTEGVFQLESSGMKSFMKELKPQNMEDIIAGISLYRPGPMDFIPRYIE 641 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 KN +E I ++ +L+ T G I+YQEQVMQI L+GY+L +D++RRAM KK + Sbjct: 642 GKNHQESIHYECEQMEEILEPTYGCIVYQEQVMQIVMKLAGYTLGRSDLVRRAMSKKKGD 701 Query: 724 EMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 M K+++ F I G NGI + A I++ + FA Y FNKSHAAAYAV++Y+ Sbjct: 702 VMIKERQNFVYGNEEEGIPGCINNGIDEKTANQIWDEMLDFAKYAFNKSHAAAYAVVAYR 761 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA+++ HYPVEF+AA +T + N KI ++ ++ I+I+PP +N F V I Sbjct: 762 TAYLRCHYPVEFMAALLTSVLGNTNKISEYSYACKKLGIKILPPDINYGEGAFSVDHGNI 821 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y L AIK +G I+ E + + P+ +D R+ SK++N+R +E+L+ +GALDCF Sbjct: 822 RYGLTAIKSLGRPVIEAIIRERNLNGPYRDFKDLVERLSSKEINKRTVENLIKSGALDCF 881 Query: 895 GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 +R Q + +D+IQK + + + + + ++ +F +I+ Sbjct: 882 HVTRKQQMIVYASVIDSIQKERKNEIAGQMSLMDLLGEEDQQSF--QISYPDVGEYEKEQ 939 Query: 951 RFENEQRVLGFYFSGHPLD 969 + E+ VLG Y SGHPL+ Sbjct: 940 KLAMEKEVLGIYVSGHPLE 958 >gi|294055954|ref|YP_003549612.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM 45221] gi|293615287|gb|ADE55442.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM 45221] Length = 1243 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 392/1102 (35%), Positives = 595/1102 (53%), Gaps = 88/1102 (7%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK FVHL VH+ +SLL+G ++ + + A A++ITD L+ F ++A Sbjct: 3 EKDREFVHLHVHTDHSLLDGCSRVDRLCSRAAELGMKALSITDHGVLYGLTSFFKQAEKH 62 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+P++GC++ + ++ L N+ + + + LL GYQ L ++VS+ + QG Sbjct: 63 GIKPLLGCEIYLVYEEKLAEVNELRAKQKS-RHMGLLARNFTGYQNLCKIVSKAHT--QG 119 Query: 126 -KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ R L L +EGLI +G + I + + + A + F +FG ++ Sbjct: 120 FYRNPRTDLETLA-AHSEGLIGFSGCLAAVIPQYLLEDKFEEAREAAAKFIDIFGKEFFI 178 Query: 185 NLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 G R+ ++++A +L +VATN+ ++++ D++ HD ++ + V+ Sbjct: 179 IELMDHGIPEQRKIIPGLLKIATEFDLKVVATNDVHYVNDADWQPHDSMLCIQTGAKVAD 238 Query: 243 KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEK 298 + R R YLK+R EM F ++PEA+ NT IA C L H P+ R IE Sbjct: 239 EKRMRYDAQQFYLKSREEMDLAFKEVPEAITNTSGIAEMCEVKLPFGVDHYPVYERPIEI 298 Query: 299 ECD----------DIQKEEENEL-----------------RNKAVAGLEVRLAQGAIAKG 331 + DI E++NE+ ++K+ L + + + Sbjct: 299 DSGSDHENFERVLDIYVEKKNEILVRDGKDPIELNAETRAKHKSNGLYLFELCKAGLNER 358 Query: 332 YHA----------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375 Y + Y ++L++EL +IA F YFLIV DFI WA++++IPVG Sbjct: 359 YGTNYDACRADWDNSSEADKRYCEQLEYELAIIAGTGFVDYFLIVWDFINWAREHDIPVG 418 Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435 PGRGSGAG + AY L ITDIDPL F LLFER LN +R+S PDFD+DFC RRD V+ YV+ Sbjct: 419 PGRGSGAGCLVAYVLKITDIDPLSFGLLFERMLNLERVSPPDFDVDFCMRRRDLVVNYVR 478 Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495 +KYG +RVA IITFG+ AK +RD+ R + +S+ ++L K+IP++ L DD Sbjct: 479 DKYGKDRVANIITFGTFGAKMVVRDLARVNDIEFSEANKLAKMIPDE------LNISLDD 532 Query: 496 SRFREARL-----ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 S + L +P ++E + +EG+ R+ HA G++I D+ ++ L+P+ Sbjct: 533 SVKKSPELQQELKVNPVAQTIIEQGRVIEGMVRNTGKHACGVIIADQDITNLIPVTLQ-E 591 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--AQRGVKVDLSLIPFDDHET 608 DL TQ+ E GL+K DFLGLKTLT++ + + +R D+ + D T Sbjct: 592 GDL-TTQYPKGPSEDLGLLKMDFLGLKTLTVIDDAQTNVRNTRRMPDFDIEKVSLKDQPT 650 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y LL + T +FQLES GM+Q + E+IIAL++LYRPGP+ I + K Sbjct: 651 YDLLNSGRTTAVFQLESGGMQQLCRQIGLSSFEEIIALIALYRPGPMQFIPQFIEGKKDP 710 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 + HPL+ +++ET GV++YQEQVMQ AQ+++GY+L AD+LRRAMGKKIKE MD Q Sbjct: 711 STVQIPHPLLKDLVQETYGVLVYQEQVMQSAQIIAGYTLGGADILRRAMGKKIKEVMDAQ 770 Query: 729 KERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 K+ FI GA + N I + A +IF LL KFA YGFNKSH+AAYA++SY+TA++K +YPVEF Sbjct: 771 KQVFIDGAKATNNIDRKTAESIFALLEKFAQYGFNKSHSAAYAMLSYRTAFLKANYPVEF 830 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GD-NRIYYSLAAIK 843 +AA +T E N +K+ F ++ N+ ++ P VN F GD + I + +AAIK Sbjct: 831 MAAVLTSEQGNADKLSNFLEECNAMNVPVLSPDVNASGATFTPIINGDESSIRFGMAAIK 890 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG A I+E D P++S DF +R K +NRRV+E+L+ GA D G+ R LL Sbjct: 891 GVGEGAALVIIEERDKDGPYESFTDFITRSSDKAVNRRVIEALIKTGAFDSLGHDRAHLL 950 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSD---KITLEKFSVENSSVRFENEQ 956 LD A K+R ++F ++ G + + T K + + ++E+ Sbjct: 951 HDLDAELAEADSRRKDREAGQASLFDMLGNDAGIAEEDQTRKTPPKIPEMPMAEKLQHEK 1010 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNIRLAAMVVSKQQKKTRKG 1012 +LGFY SGHP+D Y + M I ++ + R RL +V + Q K TRK Sbjct: 1011 DLLGFYISGHPMDAYAGL--DMAIDSFQNADDLKRNFDDRQTYRLGGIVSNLQIKYTRKD 1068 Query: 1013 SR-IGWVTFSEPAKEYEANFFP 1033 SR + + + YE FP Sbjct: 1069 SRQMAVFNVATRTQNYELIMFP 1090 >gi|16803614|ref|NP_465099.1| hypothetical protein lmo1574 [Listeria monocytogenes EGD-e] gi|224501486|ref|ZP_03669793.1| hypothetical protein LmonFR_03047 [Listeria monocytogenes FSL R2-561] gi|254831975|ref|ZP_05236630.1| hypothetical protein Lmon1_11500 [Listeria monocytogenes 10403S] gi|284801965|ref|YP_003413830.1| hypothetical protein LM5578_1720 [Listeria monocytogenes 08-5578] gi|284995107|ref|YP_003416875.1| hypothetical protein LM5923_1672 [Listeria monocytogenes 08-5923] gi|16411003|emb|CAC99652.1| dnaE [Listeria monocytogenes EGD-e] gi|284057527|gb|ADB68468.1| hypothetical protein LM5578_1720 [Listeria monocytogenes 08-5578] gi|284060574|gb|ADB71513.1| hypothetical protein LM5923_1672 [Listeria monocytogenes 08-5923] Length = 1108 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 370/1032 (35%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY +L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHQLLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ ++ LI+++ G+ G I+R + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N +L +D +A +VL A+ + V P Sbjct: 169 ---NPRLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ EM + E A T E+A RC + + +LPRF E + Sbjct: 226 PN-YFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPLNEGQNAS--- 281 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 282 -DVLRQTAFAGLKERNLLG--------MEYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ + GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + +L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S+ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F++ + I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|224499768|ref|ZP_03668117.1| hypothetical protein LmonF1_08799 [Listeria monocytogenes Finland 1988] Length = 1108 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 370/1032 (35%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY +L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHQLLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ ++ LI+++ G+ G I+R + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N +L +D +A +VL A+ + V P Sbjct: 169 ---NPRLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ EM + E A T E+A RC + + +LPRF E + Sbjct: 226 PN-YFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPLNEGQNAS--- 281 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 282 -DVLRQTAFAGLKERNLLG--------MEYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ + GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + +L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S+ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F++ + I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|254828191|ref|ZP_05232878.1| DNA polymerase III [Listeria monocytogenes FSL N3-165] gi|258600578|gb|EEW13903.1| DNA polymerase III [Listeria monocytogenes FSL N3-165] Length = 1108 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 370/1032 (35%), Positives = 591/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY +L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHQLLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ ++ LI+++ G+ G I+R + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N +L +D +A +VL A+ + V P Sbjct: 169 ---NPRLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ EM + E A T E+A RC + + +LPRF E + Sbjct: 226 PN-YFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPLNEGQNAS--- 281 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 282 -DVLRQTAFAGLKERNLLG--------MEYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ + GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + +L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S+ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F++ + I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETAIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|217964278|ref|YP_002349956.1| DNA polymerase III subunit alpha [Listeria monocytogenes HCC23] gi|217333548|gb|ACK39342.1| DNA polymerase III subunit alpha [Listeria monocytogenes HCC23] Length = 1108 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 372/1032 (36%), Positives = 590/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + A + +FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N +L +D +A +VL A+ + V P Sbjct: 169 ---NPRLFAKIETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIF-SDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ EM + +D +A T E+A RC + + +LPRF E + Sbjct: 226 PN-YFTSQEEMERDWQTDFEKQACFETGELADRCHVEIALDQHLLPRFPLTEGQN----A 280 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A GL+ R GA +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 281 PDVLRQTAYDGLKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ + GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F+V ++ I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|300766000|ref|ZP_07075971.1| DNA polymerase III, alpha subunit [Listeria monocytogenes FSL N1-017] gi|300513318|gb|EFK40394.1| DNA polymerase III, alpha subunit [Listeria monocytogenes FSL N1-017] Length = 1108 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 370/1032 (35%), Positives = 590/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ +M + E A T E+A RC + + +LPRF E + Sbjct: 226 PN-YFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 282 -DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GPGRGS AGS+ +YAL+ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGILTGPGRGSAAGSLVSYALSITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI FG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGMFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P Sbjct: 690 NEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F+V ++ I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A + G N ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DDSKELSAVMFP 994 >gi|317124660|ref|YP_004098772.1| DNA polymerase III subunit alpha [Intrasporangium calvum DSM 43043] gi|315588748|gb|ADU48045.1| DNA polymerase III, alpha subunit [Intrasporangium calvum DSM 43043] Length = 1197 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 383/1085 (35%), Positives = 586/1085 (54%), Gaps = 80/1085 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL VH+ YS+L+GA + ++ + A PA+A TD +F A EF +KA G++P Sbjct: 12 NFVHLHVHTEYSMLDGAARIGDLFTEAARMGMPALATTDHGYVFGAYEFWKKAKGTGVKP 71 Query: 70 IIGCQLDID----MQDNLKMT--NQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMY 120 IIG + I D K++ + G+ + + +L +G L + S Sbjct: 72 IIGVEAYITPGTHRADRTKVSWGDGGRDDVSGSGAYTHMTMLAENNDGMHNLFRMSSIAS 131 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 L + RI L G +GLI+ TG S I F A + + +FG Sbjct: 132 LDQVYTKWPRIDRELLSSYG-KGLIVTTGCPSSEIQTKLRFGMYDAAREVAGELRDIFGR 190 Query: 180 DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++V L H G D R +Q +++LA +LPL+ATN+ + ED +AH L+ V Sbjct: 191 DNVFVELMDH-GLDIERRTQRELIRLARDLDLPLLATNDLHYTRAEDAKAHAALLCVQSG 249 Query: 238 TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHAPILPRF 295 + + +R + D YLK+ EM ++ +LPEA +NT+ +A RC + +PRF Sbjct: 250 STLMDPNRFKFDAEDFYLKSAQEMRHLWRELPEACDNTLLVAERCEVSFTEGEGRFMPRF 309 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRLDFELNVIARMKFS 354 E +D E + + GL+ R +G DY R++ FE +VI +S Sbjct: 310 PVPEGED----ETSWFIKEVETGLQRRFPEGV-------PDYARKQAAFEEDVIVSKGYS 358 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+ L+FERFLNP+RMS Sbjct: 359 GYFLVVADFINWAKRNGIRVGPGRGSGAGSMCAYAMGITDLDPIPHGLIFERFLNPERMS 418 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFD+DF + RR EVI+YV KYG ERVAQI+T+G+++AK A++D R + P+S ++ Sbjct: 419 MPDFDVDFDERRRGEVIKYVTEKYGSERVAQIVTYGTIKAKQAVKDAARVMGHPFSVGEQ 478 Query: 475 LCKLIPNDP-AHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525 L K +P D V L I + S FR + + +++ ++ LEGL R Sbjct: 479 LTKAMPPDVMGKGVPLAEIYNPEHKRYNEGSEFRALVQTERHFEEVVDAAKGLEGLKRQW 538 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 HAAG+++ PL ++P+ + ++ +TQF+ E GL+K DFLGL+ LT+L + Sbjct: 539 GVHAAGVIMSSEPLIDVIPIMKRLQDGQVITQFDYPSCEALGLVKMDFLGLRNLTILDDA 598 Query: 586 LDFL-AQRGVKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ + A R + +DL + D D TY LL TLG+FQL+ GMR L MQPD ED Sbjct: 599 IENIKANRDLDIDLDALSKDMTDRATYDLLGRGDTLGVFQLDGGGMRALLRLMQPDNFED 658 Query: 643 IIALVSLYRPGPIDNIVVYNN---RKNGKEKIVSIHP------------LIDPMLKETQG 687 I A ++LYRPGP+ + + N RKNGK+ + + P ++P+L T G Sbjct: 659 ISAALALYRPGPM-GVNAHTNFALRKNGKQALTPLDPKLEGKLQPEMVAALEPILGTTYG 717 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 ++IYQEQVM+IAQ L+GY+L AD+LRRAMGKK KE +D + F G + G ++ Sbjct: 718 LVIYQEQVMEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVPFSDGMKQKGFNEASVK 777 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++E+L F+DY FNK+H AAY ++SY T ++K +YP E++AA +T D+ +K + Sbjct: 778 ALWEVLVPFSDYAFNKAHTAAYGLVSYWTGYLKANYPAEYMAALLTSVRDDKDKSALYLN 837 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866 + R I+++PP VN +F I + +AAI+ VG +++A +K F S + Sbjct: 838 ECRHMGIKVLPPDVNESVANFAAVGTDIRFGMAAIRNVGVPVVEAVIKAREEKGAFASFK 897 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF S+V + N+R +ESL+ AGA D G SR +++ + V+K +++ Sbjct: 898 DFLSKVPAVVCNKRTIESLIKAGAFDSLGESRRGMVEVHERYVDALVEVKKQEAIGQDSL 957 Query: 927 FA-----------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 F G F + + +++ E+ +LG Y S HPL + IL Sbjct: 958 FGAFDMGDQSGSTGGAGAFDGLPGVPSLEWDKATL-LSFEREMLGLYVSDHPLFGIEHIL 1016 Query: 976 RKMGIKGYEESVATIRGNN-------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + S+A++ G++ + +A ++ S Q K+T+KG T + E Sbjct: 1017 QSHA----DTSIASLTGDDPKPDGTPVTVAGLITSLQLKRTKKGDLWAIATVEDLDGAIE 1072 Query: 1029 ANFFP 1033 FFP Sbjct: 1073 CLFFP 1077 >gi|331092255|ref|ZP_08341083.1| hypothetical protein HMPREF9477_01726 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401687|gb|EGG81266.1| hypothetical protein HMPREF9477_01726 [Lachnospiraceae bacterium 2_1_46FAA] Length = 1157 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 383/1052 (36%), Positives = 605/1052 (57%), Gaps = 52/1052 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + + ++ + AITD +F ++F + A A GI+PI Sbjct: 3 FAHLHVHTEYSLLDGSNKIKEYVARVKELGMDSAAITDHGVMFGVIDFYRAAKAEGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + Q + + T +VLL +GY+ L ++VS+ ++ + R Sbjct: 63 LGCEVYVAPQS--RFDKEVGTREDRYYHLVLLAENNKGYENLTKIVSKAFV-EGYYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + L++ EG+I L+ +G + + + A K ++K+FG ++ LQ H Sbjct: 120 VDYELLEQY-HEGIIALSACLAGEVQKNLLRGMYEEAVKSAKRYEKIFGKGNFFLELQDH 178 Query: 190 RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +Q +++L+ + LVATN+ + ED + HD+L+ + + ++R R Sbjct: 179 GIPEQATVNQRLLRLSQDTGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLQDENRMRY 238 Query: 249 TP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +Y+K+ EM +F +ALENT +IA RC ++ LPR+ D Sbjct: 239 EGGQYYVKSPEEMAELFPYALQALENTQKIADRCDVEIEFGVTKLPRY-----DVPSGYT 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E NK L +A Y ++ +RL +EL+VI +M + YFLIV DFI+ Sbjct: 294 SWEYLNK--------LCFDGLASRYQPVTEELGERLTYELSVIQKMGYVDYFLIVWDFIK 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ N+I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD DIDFC + Sbjct: 346 YARDNDIMVGPGRGSAAGSIVSYCLGITDIDPIRYQLLFERFLNPERVSMPDIDIDFCFE 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG +RV QI+TFG++ A+ +RDVGR + +PY+ VD + K+IP + Sbjct: 406 RRQEVIDYVVRKYGADRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDTIAKMIPTELNM 465 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++ +A++ + ++ D V L+++S +LEGL RH S HAAG+VI +P+ + VP+ Sbjct: 466 TLT-KALSVNPELKKVYEEDAEVKELIDMSLRLEGLPRHTSMHAAGVVISQKPVDEYVPL 524 Query: 546 YRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLIP 602 + +D V TQF M +E+ GL+K DFLGL+TLT++Q + LA++ G K+D+ I Sbjct: 525 --SLGADGAVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAAK-LAEKSSGHKIDMHKIN 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 ++D E + T T GIFQLES+GM+ ++ ++P +EDIIA +SLYRPGP+D I Y Sbjct: 582 YNDKEVLESIGTGKTDGIFQLESAGMKNFMKELKPQNLEDIIAGISLYRPGPMDFIPQYI 641 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN + I P ++P+L+ T G I+YQEQVMQI + L+GY+L +D+LRRAM KK Sbjct: 642 KGKNDRGSITYDCPQLEPILESTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKA 701 Query: 723 EEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 + M+K+++ F+ G + NGI + A I++ + FA Y FNKSHAAAYAV++Y Sbjct: 702 DVMEKERQNFVYGNEEEGVPGCVANGIPEETANKIYDEMIDFAKYAFNKSHAAAYAVVAY 761 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA MT +DN K+ ++ +RQ I I+PP +N +F V + Sbjct: 762 QTAYLKYYYPVEFMAALMTSVIDNPGKVSEYIYASRQMGIHILPPDINEGEGNFSVDNGN 821 Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y LAAIK +G I+ E + +L++F R+ K++N+R +E+ + AGA D Sbjct: 822 IRYGLAAIKSIGRPVIEAIITEREIGGKYQNLKNFIERLSGKEVNKRTIENFIKAGAFDS 881 Query: 894 FGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 +R QL+ Q LD + K + + + + + +K F + K + + Sbjct: 882 LPGTRKQLMMIYIQILDQVNKDRKNSMSGQMSLFDLVDEEQKKEFDIPLPDVKEYEKETM 941 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRK------MGIK-GYEESVATIR-GNNIRLAAMV 1001 + FE E VLG Y SGHP++ Y+ + +K M + G E + +R G+ + ++ Sbjct: 942 LAFEKE--VLGVYVSGHPMEEYEELWKKSISATTMDFQPGEETGRSKVRDGSKEIIGGLI 999 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V+K K T+ + ++T + E FP Sbjct: 1000 VNKTIKYTKNNKVMAFLTIEDLLGTVEVVIFP 1031 >gi|323488459|ref|ZP_08093706.1| DNA polymerase III DnaE [Planococcus donghaensis MPA1U2] gi|323397966|gb|EGA90765.1| DNA polymerase III DnaE [Planococcus donghaensis MPA1U2] Length = 1020 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 366/1040 (35%), Positives = 584/1040 (56%), Gaps = 75/1040 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S V+ + +S LL+ + L+ + + ++AI +T L+ L F + AGI Sbjct: 2 SMVYPHISTSADLLKSTVRLDELFPFLKEQGASSVAIVNTK-LYGMLPFWEACRRAGIHG 60 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G I+ ++ S+VL + +GY L+++ S + D+ Sbjct: 61 VVGLSTFIEYEEQHY-------------SVVLYAQSNKGYDNLLKISSALATRDKEA--- 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPI--DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL+ EGLI + + + DR+ K LFG + +++ Sbjct: 105 -IPEQWLKAY-KEGLICVIPNKAEWLLTDRSLVIG----------YIKSLFGQAAFGSIE 152 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R G ES ++L E+P++AT+ ++ ++D A++V A+ + D R Sbjct: 153 RPGGVVSAYESDFIELCAQLEIPIMATHEIRYMHQQDAFAYEVASAIGQG--LKMNDPER 210 Query: 248 VTPDH---YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 TP+H Y+ ++ E F+D E ++ T + + C + ++ +LP + E Q Sbjct: 211 QTPEHTNAYVPSQQEFFEWFADRNEWVQQTANMLKSCRVTIPMNQQLLPVYPLSE----Q 266 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++ + + GL+ R+ + ++Y++RL++EL+VIA+M F YFLIVADF+ Sbjct: 267 VDKASYIAQLCKTGLKERVPR-------FPENYQERLNYELSVIAKMGFIDYFLIVADFM 319 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AK +I GPGRGS A S+ AY+L IT++DP+ LLFERFLNP+R+++PD DIDF Sbjct: 320 KYAKDQDIMTGPGRGSSASSLVAYSLKITNVDPIEHGLLFERFLNPERVTLPDIDIDFAD 379 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR EV+ YV KYG R AQIITFG+L AKA RD R +++ + KLI N P Sbjct: 380 HRRHEVVDYVAKKYGAVRTAQIITFGTLSAKAVARDTARVFGFEAEELEAISKLISNRPG 439 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + A+ + S+F + + + + KLEGL RHASTHAAG+++ PL VP Sbjct: 440 TTLR-SALKESSKFNDWIIEREERKSWFKTALKLEGLPRHASTHAAGVILSPTPLVNHVP 498 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVDLSLIP 602 + + + +TQ+ M+ +E GL+K DFLGL+ LT+L+ ++L + + K++ S IP Sbjct: 499 IEKG-HEGIYLTQWPMQELEAIGLLKMDFLGLRNLTILEQIRNLVYWGTKQ-KINYSDIP 556 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +T+ LL + T G+FQLES GMRQAL+ +QP DI+A+ +LYRPGP++ I +Y Sbjct: 557 LDDEKTFKLLASGDTTGVFQLESDGMRQALQQIQPTAFGDIVAVNALYRPGPMEFIPLYA 616 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+E + IHP+++P+L ET GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK + Sbjct: 617 RRKHGQETVKYIHPILEPILSETYGVIVYQEQIMHIAAKMAGFSLGEADLLRRAVSKKKR 676 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E +D+++E F+ GA+ G +K+ A +++L+ +FADYGF KSHA AY++ISYQ ++MK H Sbjct: 677 EILDEEREHFVLGATSKGFTKSEAAEVYDLIVRFADYGFPKSHAVAYSMISYQLSYMKAH 736 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPV F + +T N EK K+ Q+ ++ I I+PPSV F V D +I + L A+ Sbjct: 737 YPVYFYTSLLTNSAGNAEKTKQLLQEIKEKKIPILPPSVQKSRHTFSVEDGQIRFGLNAV 796 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGV TT + ++ A + PF L + R+ + NR+ E L+ AGALD FGY R +L Sbjct: 797 KGVPGTTIKALLAAREEGPFTGLFNIAERISALHFNRKSFEPLIKAGALDEFGYDRGVIL 856 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KITLEKFSVENSSVRFENEQ 956 SLD+ K+A+ V+ N E G F D K K S +++ E E+ Sbjct: 857 ASLDSAIKHAELVKPN----------DEPGLFDDMGASFMKPKYTKASEMPENLKLEFEK 906 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRG-NNIRLAAMVVSKQQKKTRKGS 1013 VLGFY S HP++ K + K Y+ +S+ + R ++++ ++ ++ +T+KG Sbjct: 907 DVLGFYLSKHPIEREK----EHRQKSYDALKSLKSKRDRESVKVLGVIEEIKRIRTKKGD 962 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + ++T + FP Sbjct: 963 AMAFLTLMDETGPASVTLFP 982 >gi|116873003|ref|YP_849784.1| DNA polymerase III, alpha subunit [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741881|emb|CAK21005.1| DNA polymerase III, alpha subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1108 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 374/1034 (36%), Positives = 595/1034 (57%), Gaps = 53/1034 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGK-TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IG + +T QG P + I++ STA GY +L+++ S + ++G + Sbjct: 63 IG----------MTVTIQGYFNPINSYELILIAESTA-GYHQLLKIASAIQTREEGPE-- 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 + SWL+ ++ LI ++ G+ G I+R + A + +FG+ +Y++ Q+ Sbjct: 110 -LPQSWLRAYSSD-LIAISPGAKGEIERLLMEENRDGALEAYENLVAIFGNSSVYLSAQK 167 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + +++ + E+P+VAT + +L +D +A +VL A+ + V P Sbjct: 168 E---NPRLFAKIEVFSAEEEVPVVATKDVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLA 224 Query: 249 TPDHYLKNRSEMVSIF-SDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 P+ Y ++ EM + +D +A T ++A RC + + +LPRF E ++ Sbjct: 225 GPN-YFSSQDEMERDWQTDFEKQACLETGKLAERCHVEIALDQHLLPRFPLDE----KQN 279 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR A AGL+ R ++Y+ RLD+EL VI M F+ YFLIV D I++ Sbjct: 280 ASDVLRQTAYAGLKER--------DLLTREYQNRLDYELKVITEMGFADYFLIVWDVIRY 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 +++ I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +R Sbjct: 332 SREAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ Sbjct: 392 RDEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGMT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 452 LP-KALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDLSLIPF 603 D +TQF M +EK GL+K DFLGL+ L+LL KS+++ +++ + L+ I Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYASEK--PLTLADISL 567 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + Sbjct: 568 EDKKTLTLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIA 627 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+GKEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + Sbjct: 628 RKHGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKAD 687 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +++++ F+ GA G S+ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K HY Sbjct: 688 VLNEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHY 747 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAI 842 P F+++ ++ N +KI ++ +A+ + I ++ PS+N F++ + I YS I Sbjct: 748 PAAFMSSLLSSVFGNDDKISQYITEAKNYGINMLAPSINHSNYYFQMENETSIRYSFRVI 807 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 + V I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L Sbjct: 808 RKVPAKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATIL 867 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLG 960 ++D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Sbjct: 868 ATIDAVLQYISLLGED--SKGMNLFA-EDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTG 924 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HP+ Y+ L+ + I +A I G N ++AA V + +T+KG + ++T Sbjct: 925 QYVSAHPVSYYQNKLQNLSIT----KLANITSGKNYQVAAYVHEVKSIRTKKGETMCFLT 980 Query: 1020 FSEPAKEYEANFFP 1033 S+ +KE A FP Sbjct: 981 ISDDSKELSAVMFP 994 >gi|78187124|ref|YP_375167.1| DNA polymerase III, alpha subunit [Chlorobium luteolum DSM 273] gi|78167026|gb|ABB24124.1| DNA polymerase III, alpha subunit [Chlorobium luteolum DSM 273] Length = 1188 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 370/1011 (36%), Positives = 553/1011 (54%), Gaps = 62/1011 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YS+ + + K A+ ++A+TD +F+ E A AG++ I Sbjct: 3 FVHLHAHTHYSMQSSPIFPGELFTKAASLGMKSVAVTDYCAIFNMPELFSDAAGAGVRLI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q K PS+VLLV GY+ L L+SR D + Sbjct: 63 IGSE----LLLLEGEEHQQKQA--QAPSLVLLVQNETGYRNLCVLLSRASK-DGFHNGMP 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 L E +GL L+ SSG I RA ++ AE + ++++FG+R ++ LQRH Sbjct: 116 HVDPKLLETYHDGLFCLSAYSSGRIGRALLSGAAGEAESQAAYYREVFGNRFHLELQRHS 175 Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRV 248 YD + V L +PLVATNN +L D + ++A + SQ Sbjct: 176 THYDDELNAATVALGEKLSIPLVATNNVHYLERRDAGCYRAMVANRTKEKLSSQNLLALP 235 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 ++YLK+ EM +F D L T+ IA C++ PILP F E +E Sbjct: 236 GKEYYLKSPEEMGLLFDDRYGELSATLRIAEACTYAFSEKDPILPHFPVPEA---FPDEA 292 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR+ G + G +D ++R++ EL VI +M FS YFLIV+D IQ ++ Sbjct: 293 AYLRHLTWEGAREKYGDNP-EDGITPEDVKERIELELGVIEKMGFSSYFLIVSDLIQASR 351 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 K VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R+SMPD DIDF + Sbjct: 352 KMGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGKQ 411 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +V+ Y KYG E VA+++ G+L AKAA+RD R L++P S DRL KL+P+ P + Sbjct: 412 KVLEYTVEKYGPESVAKVVAVGTLGAKAAIRDAARVLEVPLSVADRLAKLVPSRPGTTLE 471 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY-- 546 +A+ + RE + P + L++ ++ LEG R+ S HA +VI + PL + VP+Y Sbjct: 472 -KALLEVKELREYADSTPEIRELMDYARALEGRARNVSMHAGAVVITEGPLEEQVPLYVS 530 Query: 547 -----------RDVRSDLP----------------VTQFNMKWIEKAGLIKFDFLGLKTL 579 ++ D P VTQF+ WIE AGL+K D+LGL TL Sbjct: 531 NKIETEERQYADEIDLDEPAAGKPKSADGAGEKQVVTQFDKNWIETAGLLKIDYLGLVTL 590 Query: 580 TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ ++L + +R GV ++L +P +D +T+ + GIFQ ESSGM+ + +QP Sbjct: 591 AVIDETLRLIKKRHGVDIELEEVPMNDRKTFKIFQEGKMAGIFQFESSGMQSYMTRLQPT 650 Query: 639 CIEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690 I DIIA+ +LYRPG ++ N V ++ +RK+G+E I +HP+++ +LKET GVI+ Sbjct: 651 QIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGRETIDYMHPMLETILKETYGVIV 710 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVMQI+Q++ G+S+++AD LR+AMGKK E M+K K F+ G + G+ ++A +F Sbjct: 711 YQEQVMQISQVMGGFSMAKADNLRKAMGKKKPEIMEKFKADFVKGGVEQGVHDSLATRVF 770 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 EL+A+FA YGFNKSH+AAY V++Y T W+K HY +EF+ A + E+ + E++K +A+ Sbjct: 771 ELMAEFAGYGFNKSHSAAYGVLAYWTGWLKAHYTIEFMTAILNSEIGDTERMKHLTDEAK 830 Query: 811 QFNIQIMPPSVNTP----CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866 F I I+PPS+N VD G I L+AIK VG AR I+ A + D L Sbjct: 831 SFGISILPPSINKSDALFSVDDSTGPPAIRVGLSAIKQVG-GAARAIITARLRRKRDYLN 889 Query: 867 --DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 D + VD + +NR+ LE L+ GA D R +LL ++D K+ Q + T Sbjct: 890 LFDLTASVDQRVMNRKALECLILCGAFDEIDPHRARLLANIDKAIKFGQIENRAVTLGQC 949 Query: 925 NIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 F+ E+GT + +E + + +E++++GFY S HPL ++ Sbjct: 950 GFFSVEEGTVEEDAHYPDMEPAAEMPEPEKLMHEKKLVGFYLSRHPLSPWR 1000 >gi|163815364|ref|ZP_02206739.1| hypothetical protein COPEUT_01529 [Coprococcus eutactus ATCC 27759] gi|158449338|gb|EDP26333.1| hypothetical protein COPEUT_01529 [Coprococcus eutactus ATCC 27759] Length = 1195 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 367/988 (37%), Positives = 565/988 (57%), Gaps = 32/988 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+GA + ++ + ++AITD ++ +EF + A GI+PI Sbjct: 3 FTHLHVHTGYSLLDGAAKIKELVHRAKELGYDSLAITDHGVMYGVIEFYEACMAEGIKPI 62 Query: 71 IGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC++ + + +G + +VLL T +GY L ++V+R + + Sbjct: 63 LGCEVYVSPGSRFDREVGKGDDRYY---HLVLLAETDQGYHNLSKIVTRGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQR 188 R+ + L++ EG+I L+ +G + N + A K + ++ +FG+ Y + +Q Sbjct: 119 RVDMEVLEKY-HEGIIALSACLAGEVATHLRKNDYEGARKAAVKYRNIFGENNYFLEMQD 177 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ + V++L+ +P+V TN+S ++ ED+EAHDVL+ + + V ++R R Sbjct: 178 HGIPDQATVNAGVMRLSKELGIPMVVTNDSHYIYAEDWEAHDVLLCIQTNRKVQDENRMR 237 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +YLK++ EM +F EALENT +IA RC+ + +PRF + D Sbjct: 238 YDGGQYYLKSKEEMAELFPYALEALENTHKIAERCNVKIIFGEQKVPRF---DVPDGYTA 294 Query: 307 EENELRNKAVAGLE----VRLAQGA-IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 EE L G+E ++ A +++G D RQR+D+EL+VI M F YFLIV Sbjct: 295 EEY-LEKLVYDGMERKYGIKYADTEDLSEGDKGYDVRQRIDYELSVIKSMGFVDYFLIVW 353 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +AK N I VGPGRGS GSV AY L IT I+P+++ LLFERFLNP+R+SMPD DID Sbjct: 354 DFIHFAKTNGIAVGPGRGSAVGSVVAYCLDITTIEPMQYDLLFERFLNPERVSMPDIDID 413 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RR EVI Y KYG E V QII + ++ A+ +RDVGRA+ +PY+Q D L K IP Sbjct: 414 FCYIRRQEVIDYCVKKYGEECVTQIIAYQTMGARNVIRDVGRAMDIPYAQCDALAKAIPA 473 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + + A+ F++ + +L++I++KLEGL R+A HAAG+VIG + + Sbjct: 474 EKDMTIDI-ALKTSKDFQDMYRGSDEIRKLVDIAKKLEGLPRNAGMHAAGVVIGREAIEE 532 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600 P+ + VTQF +E G++K DFLGL+T T++Q ++ + + G +D+ Sbjct: 533 YAPLSVGAEGAV-VTQFEKNTVEHLGMLKMDFLGLRTATVIQDTVKLIKENTGRDLDIDN 591 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I +DD L+ T G+FQLES GM+ + ++P ++D+IA V+L+RPGP+ I Sbjct: 592 IDYDDPNILGLMGQGKTEGMFQLESPGMKNFMMKLKPQSLDDVIAGVALFRPGPMQFIDD 651 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y K +E + P ++ +L+ T G IIYQEQVMQI L+GY+L +D++RRAM KK Sbjct: 652 YIRGKENRELVRYDTPELEEILEPTYGCIIYQEQVMQIVMKLAGYTLGRSDLVRRAMAKK 711 Query: 721 IKEEMDK--------QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 EEM+K KE + G NGIS+ +A IF+ + KFA+Y FNKSH+ AYAV+ Sbjct: 712 KPEEMEKERKNFVYGNKELNVPGCVANGISEDVANKIFDEMMKFAEYAFNKSHSVAYAVL 771 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 + QTA++K +YPVEF+AA ++ +DN K+ K+ +Q N++I+PP +N F + D Sbjct: 772 AAQTAYLKYYYPVEFMAALISSVLDNNGKVAKYINVCKQMNVEILPPDINEGVAKFSISD 831 Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +I Y L+ IK VG I+E + F L DF +R+ SK N++ +E+L+ +GA Sbjct: 832 GKIRYGLSGIKSVGAAVVDRIVEERKKNGRFKDLHDFLTRMPSKDTNKKTVEALILSGAF 891 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN--SS 949 D G +R Q+ +L I + K+R + ++F F+ + VE + Sbjct: 892 DGMGANRKQMFMALPAISEETARERKSRESGQLSLFDIMGEDFAASTRVPYPEVEEYPDT 951 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRK 977 + E+ VLG Y SGHPL Y +L+K Sbjct: 952 EKLSLEKSVLGVYISGHPLGKYVDLLQK 979 >gi|257068282|ref|YP_003154537.1| DNA polymerase III subunit alpha [Brachybacterium faecium DSM 4810] gi|256559100|gb|ACU84947.1| DNA polymerase III, alpha subunit [Brachybacterium faecium DSM 4810] Length = 1191 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 394/1080 (36%), Positives = 583/1080 (53%), Gaps = 68/1080 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VH+ YSLL+GA ++ ++ + QPA+AITD LF A EF + A AGI Sbjct: 6 SDDFVHLHVHTDYSLLDGAAKIDKLVAETVRQGQPAVAITDHGYLFGAYEFYKAAKDAGI 65 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPT---------------VPSIVLLVSTAEGYQRL 112 +PIIG + + ++ +T + T + LL + G L Sbjct: 66 KPIIGIEAYV--TPGTSRHDRTRTQWGTREQQLAGDDVSARGAYTHMTLLSHSTTGMHNL 123 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 L S L Q + R+ L + ++GLI TG SG + A K Sbjct: 124 FRLGSAASLEGQMGKWPRMDREILSQY-SDGLIATTGCPSGEVQTRLRLGQFDEAVKAAG 182 Query: 173 TFKKLFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 F+ +FG + +V L H G D + ++++A PL+ATN+ +++E+D D Sbjct: 183 EFQDIFGKEHYFVELMDH-GLDIEKRVSKDLLEVAKAVGAPLLATNDLHYVTEQDATIQD 241 Query: 230 VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 VL+ + + ++ DR + +YLK+ +M +F ++PEA +NT+ +A C + Sbjct: 242 VLLCINSGSRLNDPDRFKFGGSGYYLKSAQQMRELFREMPEACDNTLRVAEMCDVEFRTT 301 Query: 289 AP---ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 A +P F +D EE+ + GLE R G D ++R D+E+ Sbjct: 302 AEGANYMPHFPTPPGED----EESWFVKEVQRGLEYRYPAGI------PDDVQKRADYEV 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI +M F GYFL+V+D+I+WAK+ +I VGPGRGSGAGS+ AYA+ ITD+DPL LLFE Sbjct: 352 SVILQMGFPGYFLVVSDYIKWAKEQDIRVGPGRGSGAGSMVAYAMRITDLDPLEHGLLFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNPDR+SMPDFD+DF RR EVI YV+ KYG +R+AQ+ T+G ++ K +L+D R L Sbjct: 412 RFLNPDRVSMPDFDVDFDDRRRGEVIEYVERKYGDDRIAQVATYGVMKTKNSLKDAARVL 471 Query: 466 QMPYSQVDRLCK-LIPNDPAHPVSLQAIAD--DSRFREA----RL--ADPSVDRLLEISQ 516 P+S DRL K L P +S++ I D D R+ EA R+ DP V +++EI++ Sbjct: 472 DYPFSMGDRLSKALPPTVMGKDISVKGIFDPEDKRYAEAGEFRRIHDEDPDVQKVVEIAK 531 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +EGL R HA +++ PL +VPM R +TQF +E GL+K DFLGL Sbjct: 532 GVEGLTRGWGVHACAVIMSSDPLVDIVPMMRRPSDGQIITQFEYPTLETLGLLKMDFLGL 591 Query: 577 KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT+L ++ +A+ G DL +PFDD TY LL TLG+FQL+ SGMR L M Sbjct: 592 RNLTVLSDAVANMARNGKTPPDLETLPFDDPATYELLQKGDTLGVFQLDGSGMRTLLRQM 651 Query: 636 QPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVI 689 +PD DI A+ +LYRPGP + + Y RKNG ++I IHP L +P+ L ET GV+ Sbjct: 652 KPDQFGDITAVSALYRPGPMGMGSHTNYALRKNGLQEITPIHPELEEPLAEILDETYGVL 711 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQ AQ ++GYSL EAD+LRRAMGKK K E+DKQ F +G NG S + Sbjct: 712 VYQEQVMQTAQKVAGYSLGEADILRRAMGKKKKAELDKQYVSFEAGMKSNGYSDAAVQAL 771 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 +E L FADY FNKSH+AAY V+SY TA++K ++P E++AA +T +N +++ + D Sbjct: 772 WETLLPFADYAFNKSHSAAYGVVSYWTAYLKANHPTEYMAALLTSTQENRDRLGLYLGDC 831 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDF 868 R I ++PP VN + F I + L+AI+ VG I++ +K F S DF Sbjct: 832 RHRGITVLPPDVNESDLYFSAVGEDIRFGLSAIRNVGAHVVEEIIKTREEKGAFTSFTDF 891 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHE 924 +V N+R +ESL+ GA D G +R L+ ++D++ + + + + Sbjct: 892 LDKVPLSVCNKRTIESLIKGGAFDELGANRRSLVLIHEDAVDSVVDVKRKEAQGQYDLFA 951 Query: 925 NIFAHEKGTFSDK--------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++FA G + IT+ + + E+ +LG Y S HPL + ++ Sbjct: 952 DMFAGAGGDGEESMASGSAATITVPDLPEWDRKEKLAFERNMLGLYVSDHPLYGLEHVIA 1011 Query: 977 K---MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + I + A G + +A ++ S Q+K T+KG T + + FP Sbjct: 1012 QNSSTSISALADDGAVQDGTMVTIAGLITSLQRKTTKKGDMWAIATVEDLEGSIDCLLFP 1071 >gi|16800677|ref|NP_470945.1| hypothetical protein lin1609 [Listeria innocua Clip11262] gi|16414096|emb|CAC96840.1| dnaE [Listeria innocua Clip11262] Length = 1108 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 369/1032 (35%), Positives = 592/1032 (57%), Gaps = 49/1032 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G ++R + A + +FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEVERLLMEENRDGALEVYENLVSIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + + P+VAT + ++ +D +A +VL A+ + V P Sbjct: 169 ---NPRLFAKIEAFSAEEKAPVVATKDVQYMEPKDAQAKEVLTAIRDNRTVDWATLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y +++EM + E A T ++A RC + + +LPRF E ++ Sbjct: 226 PN-YFTSQAEMERDWQTGFEKQACLETEKLAERCHVEIALDQHLLPRFPLNE----EQNA 280 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R A++Y++RLD+EL VI M F+ YFLIV D I+++ Sbjct: 281 PDVLRETAYAGLKER--------NLLAKEYQERLDYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ F+ GA G S++ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K HYP Sbjct: 690 NEERIHFVEGARSKGYSESSANQVYDMIIQFANYGFNRSHAAAYSKIAFQLAYLKAHYPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F+++ ++ N +KI ++ +A+ + I ++ PS+N F++ + I YS I+ Sbjct: 750 AFMSSLLSSVFGNDDKISQYITEAKNYGINMLAPSINHSNYYFQMENETSIRYSFRVIRK 809 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 V T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L + Sbjct: 810 VPTKFILEIINERKKAPFKDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILAT 869 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFY 962 +D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 870 IDAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQY 926 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HP+ Y+ L+ + I +A++ I ++AA V + +T+KG + ++T S Sbjct: 927 VSAHPVSYYQNKLQNLAIT----RLASVSSGKIYQVAAYVHEVKSIRTKKGETMCFLTIS 982 Query: 1022 EPAKEYEANFFP 1033 + +KE A FP Sbjct: 983 DESKELSAVMFP 994 >gi|296129453|ref|YP_003636703.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109] gi|296021268|gb|ADG74504.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109] Length = 1187 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 390/1088 (35%), Positives = 579/1088 (53%), Gaps = 91/1088 (8%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 + PSFVHL VHS YS+L+GA + +LD+ Q A+AITD LF A EF QKA G Sbjct: 7 EDPSFVHLHVHSEYSMLDGAARIGEMLDEAKRLGQTAMAITDHGYLFGAFEFWQKATERG 66 Query: 67 IQPIIGCQLDID-----MQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIEL 115 I+PIIG + + N + V + + LL T EG L + Sbjct: 67 IKPIIGVEAYVTPGTSRFDQNRVRWGEAHQAADDVSARGAYTHLTLLSRTTEGMHNLFRM 126 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S + Q + R+ L +GLI +G SG I A + + Sbjct: 127 GSLASVEGQMGKWPRMDRELLSRY-ADGLIATSGCPSGEIQTRLRLGHVDEALRAAGELQ 185 Query: 176 KLFG-DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +FG + +V + H G + R ++++A P+VATN+ + EED AH+VL+ Sbjct: 186 DIFGKEHFFVEVMDH-GLEIERRVIKDLLRIAEGIGAPIVATNDLHYTREEDAHAHEVLL 244 Query: 233 AVAHSTVV----SQKDRPRVT---PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 AV + + S + R +Y+K+ +EM +++LPEA +NT+ +A +C Sbjct: 245 AVQSGSTLDEPTSDQGGSRFAFGGTGYYVKSAAEMRRTWAELPEACDNTLLVAEQCEVKF 304 Query: 286 QVHAPILPRFI----EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 A +PRF E E KE EN L +R GAI R++ Sbjct: 305 NTGANYMPRFPVPAGENEDSWFVKEVENGL---------LRRYHGAIP-----DHVRKQA 350 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 D+E VI ++ FSGYFL+VADFI WAKK I VGPGRGS AGS+ +YA+ IT++DPL Sbjct: 351 DYETGVITQLGFSGYFLVVADFINWAKKQGIRVGPGRGSAAGSMASYAMGITELDPLEHG 410 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 L+FERFLNP+R+S PD D+DF + RR EVIRYV KYG +RV QI+T+G+++AK AL+D Sbjct: 411 LIFERFLNPERVSWPDVDVDFDERRRGEVIRYVTEKYGDDRVCQIVTYGTIKAKQALKDA 470 Query: 462 GRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSV 508 R L P++ ++L K +P DP HP A+ FR+ ADP Sbjct: 471 SRVLGFPFAMGEKLTKAMPPPVMGKDIPLSGMYDPEHP----RYAEADEFRQVVAADPEA 526 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 R+LE ++ LE L R HAAG+++ PL ++P+ + + +TQF+ E GL Sbjct: 527 QRVLETARGLENLKRQWGVHAAGVIMSSEPLLDIIPIMKRPQDGAIITQFDQPASESLGL 586 Query: 569 IKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 IK DFLGL+ LT+L +L+ + G + + + DD TY LL TLG+FQL+ Sbjct: 587 IKMDFLGLRNLTILDDALENIVMNGKPPILIEEVALDDPPTYELLGRGDTLGVFQLDGGP 646 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM--- 681 MR L M+PD ED+ A+++LYRPGP +++ Y RKNG ++I IHP L++P+ Sbjct: 647 MRSLLRQMRPDNFEDVSAVIALYRPGPMGMNSHTNYALRKNGLQEIEPIHPELVEPLEDV 706 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 + T G+I+YQEQV + AQ L+GYSL +AD+LRRAMGKK KE +DK+ F +G + G Sbjct: 707 VGVTYGLIVYQEQVQRAAQKLAGYSLGQADLLRRAMGKKKKEVLDKEFVPFQAGMRERGY 766 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S ++++L FA Y FNK+H+AAY V+SY TA++K ++P E++AA +T D+ +K Sbjct: 767 SDAAIQAVWDVLVPFAGYAFNKAHSAAYGVVSYWTAYLKANFPTEYMAALLTSVRDDKDK 826 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860 + + R I ++PP VN+ +F I + L A++ VG I+ A +K Sbjct: 827 SALYLGECRHMGITVLPPDVNSSSANFTAVGKDIRFGLTAVRNVGANVVDAIVAAREEKG 886 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVE 916 F S DF +V + N+R +ESL+ AGA D G++R LL Q++D + V+ Sbjct: 887 AFTSFTDFLDKVPAVVCNKRTIESLIKAGAFDSLGHARRALLLVHEQAVDAVID----VK 942 Query: 917 KNRTNKHENIFA-----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 + ++FA E GT + + + R E+ +LG Y S HPL Sbjct: 943 RKEATGQFDLFADLGGGDETGT-GIAVQIPDLPDWDKKQRLAFEREMLGLYVSDHPLSGL 1001 Query: 972 KPILRKMGIKGYEESVATIR-------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 + +L + S+AT+ G+ + +A +V S Q+K +++G+ VT + Sbjct: 1002 EHVLSAQA----DVSIATLNADTERPDGSTVVVAGLVTSLQRKMSKQGNPWAAVTLEDME 1057 Query: 1025 KEYEANFF 1032 E FF Sbjct: 1058 GGVEIMFF 1065 >gi|62184719|ref|YP_219504.1| DNA polymerase III subunit alpha [Chlamydophila abortus S26/3] gi|62147786|emb|CAH63532.1| putative DNA polymerase III alpha subunit [Chlamydophila abortus S26/3] Length = 1248 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 377/1080 (34%), Positives = 593/1080 (54%), Gaps = 66/1080 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + + K Q P++A+TD NL+ A+EF ++ I+P Sbjct: 8 TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKP 67 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + K+ ++LL GY+ L L+S + + Sbjct: 68 IIGCEVYVAPSSRFDKKKEKKSR--VAHHLILLCKNELGYRNLC-LLSSLAFTEGFYYFP 124 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L + EGLI L+ S + +A S + EK L ++ LFG+ Y +Q H Sbjct: 125 RIDRELLSQ-HAEGLICLSACLSSSVAQAAL-ESEEALEKDLRWYQNLFGEDFYSEIQLH 182 Query: 190 R----------------GYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEA 227 + Y ++ +SQ V+ + + VATN+ ++ +D+ A Sbjct: 183 KMSEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLA 242 Query: 228 HDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 H++L+ V ++ + + K + + ++Y K+ EM +F+D PE + NT+E+ Sbjct: 243 HEILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMARLFADHPETITNTLEV 302 Query: 278 ARRCSFILQV---HAPI-LPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQ---G 326 A +C+ L + H PI +P F++ + + ++E LR GL + Sbjct: 303 ADKCNLHLNLSSKHYPIYVPEFLKSKQNYTEEERYAASAAFLRELCEKGLSTKYTPEKLA 362 Query: 327 AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382 I+K + +D ++RL+ E+++I Y LIV D I WAK N IPVGPGRGSGA Sbjct: 363 HISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGA 422 Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442 GSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + Sbjct: 423 GSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 482 Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502 VAQIITFG+++AK A++DVGR L +P S+V+ + K IP + +A+ D E Sbjct: 483 VAQIITFGTMKAKMAVKDVGRTLDVPLSKVNHIAKHIPE--LNTTLAKALETDPHLNELY 540 Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMK 561 D ++++++ +LEG R+ HAAG++I GDR L+ +P+ S + TQF+MK Sbjct: 541 TNDAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDR-LTNHIPICISKDSTMITTQFSMK 599 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E G++K DFLGLKTLT + ++ + ++ G ++++ +P DD T+ LL T+GI Sbjct: 600 PVESVGMLKVDFLGLKTLTSIHIAMRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGI 659 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ+ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++ Sbjct: 660 FQMESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMES 719 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M K++ RF A KNG Sbjct: 720 ILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERARKNG 779 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E Sbjct: 780 IDAELATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTSDSDDIE 839 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860 KI K +A +I I+PP +N DF D I +++ AI+G+G I+E Sbjct: 840 KIGKLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKH 899 Query: 861 -PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 P+ S+ DF R D KK+ ++ E+L+ AG D F R +L+++ +K Sbjct: 900 GPYQSIRDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEA 959 Query: 920 TNKHENIFA----HEKGTFSDKITLEKFSVENSSVR-FENEQRVLGFYFSGHPLDVYKPI 974 F+ H+K +T V S + E+ +LG Y + HP+D K I Sbjct: 960 ATGVMTFFSLNAMHQKHPIP--LTPATNVVRRSKKDILKKEKELLGIYLTEHPMDAVKDI 1017 Query: 975 LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033 L ++ + E G IR ++ + + KG R + ++ YE +P Sbjct: 1018 LPRLSVVSPGEFANLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1077 >gi|322648192|gb|EFY44659.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 826 Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust. Identities = 322/706 (45%), Positives = 450/706 (63%), Gaps = 33/706 (4%) Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP Sbjct: 1 MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 60 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY Sbjct: 61 ERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYG 120 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 VDR+ KL+P DP ++ +A + + E AD V L+++++KLEG+ R+A HA Sbjct: 121 FVDRISKLVPPDPGMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAG 179 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 180 GVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMIN 239 Query: 591 QRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 +R K +D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IA Sbjct: 240 KRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIA 299 Query: 646 LVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQI 698 LV+L+RPGP+ + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQI Sbjct: 300 LVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQI 359 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+LSGY+L AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA Sbjct: 360 AQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAG 419 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+P Sbjct: 420 YGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILP 479 Query: 819 PSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKK 876 P +N+ F V D I Y + AIKGVG I++A + F L D C+R D+KK Sbjct: 480 PDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKK 539 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 LNRRVLE L+ +GA D G R L+ SL + K A K ++F G ++ Sbjct: 540 LNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMF----GVLAE 595 Query: 937 KITLEKFSVENS---------SVRFENEQRVLGFYFSGHPLDVY-KPILRKMGIKGYEES 986 E +E S V + E+ LG Y +GHP++ Y K I R +G ++ Sbjct: 596 ----EPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDM 651 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T RG A +V++ + T++G+RIG T + + E F Sbjct: 652 HPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 697 >gi|184201117|ref|YP_001855324.1| DNA polymerase III subunit alpha [Kocuria rhizophila DC2201] gi|183581347|dbj|BAG29818.1| DNA polymerase III alpha subunit [Kocuria rhizophila DC2201] Length = 1184 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 379/1000 (37%), Positives = 560/1000 (56%), Gaps = 58/1000 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F HL VH+ YS+L+GA LN++ ++ ++A TD +F A +F KA AAGI+P Sbjct: 9 GFTHLHVHTEYSMLDGAARLNDLFEECHRLGMDSLATTDHGFVFGAFDFWNKARAAGIKP 68 Query: 70 IIGCQLDID----MQDN--LKMTNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSRMY 120 IIG + + QD +K + G+ + + LL ++EG Q L ++ Sbjct: 69 IIGVEAYLTPGTARQDRTRVKFADGGRDDVSGAGAYTHMTLLAQSSEGMQNLFRASTKAS 128 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 L Q + R+ L + G +GLI TG SG + A K F+ +FG Sbjct: 129 LEGQLYKP-RMDRELLNQYG-KGLIATTGCPSGEVQTRLRLGQYDEAVKAAAEFRDIFGA 186 Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y L H G ++ +++LA LPLVATN+ + ED ++H L+ V + Sbjct: 187 ENFYCELMDHGLGIEKRVTQDLLRLAKELNLPLVATNDLHYTHAEDAKSHAALLCVQSGS 246 Query: 239 VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + R + D YLK+ +M +F D P+A +NT+EIA RC A +PRF Sbjct: 247 TLQDPKRFKFDADEFYLKSPEQMRELFRDFPDACDNTLEIAERCEVEFDTSANYMPRFPT 306 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E +D E + + GL R +G D R++ ++E +I +M F GYF Sbjct: 307 PEGED----ETSWFIKEVEKGLHYRFPEGI------PDDVREQAEYEKKIIIQMGFPGYF 356 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+VADFI W+K N I VGPGRGSGAGS+ AYA+ IT+++PL L+FERFLNPDR+SMPD Sbjct: 357 LVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITELNPLAHGLIFERFLNPDRVSMPD 416 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DF RR EVI YV KYG ERVA I+T+G+++AK AL+D R L P+S +RL K Sbjct: 417 FDVDFDDRRRSEVIHYVTEKYGDERVAMIVTYGTIKAKQALKDSSRVLGYPFSMGERLTK 476 Query: 478 LIPNDP-AHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 +P D +SLQ + D RE DP ++ E +Q LEGL R H Sbjct: 477 AMPPDVMGKGISLQDVYDKDAKRYDEAGELREVLEDDPESMKVFETAQGLEGLKRQWGVH 536 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+++ PL ++P+ R + +TQF+ E GLIK DFLGL+ LT++ +L+ Sbjct: 537 AAGVIMSSDPLIDIIPLMRREQDGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDALEN 596 Query: 589 LA--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 +A + G +DL +P DD +Y LL TLG+FQL+ MRQ L+ M+PD EDI A Sbjct: 597 IALNRDGFVLDLEHLPIDDPGSYELLARGDTLGVFQLDGGPMRQLLKLMRPDNFEDISAT 656 Query: 647 VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQVMQIAQ 700 ++LYRPGP+ ++ Y RKNG ++I IHP L +P+ L T G+I+YQEQVM IAQ Sbjct: 657 IALYRPGPMGANSHTNYALRKNGAQEITPIHPELAEPLEDILGTTYGLIVYQEQVMAIAQ 716 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 ++GYSL +AD+LRRAMGKK K E+DKQ + F G G S+ ++++L F+DY Sbjct: 717 KVAGYSLGQADILRRAMGKKKKAELDKQYQGFHQGMVDRGYSEAAIKALWDILLPFSDYA 776 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNK+H+AAY ++SY TA++K HYP E++AA +T D+ +K+ + + R I ++PP Sbjct: 777 FNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLTECRHMGITVLPPD 836 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879 VN ++F I + + A++ VG + +++A ++ F S DF ++V + N+ Sbjct: 837 VNESELNFTPVGTDIRFGMGAVRNVGANVVQAMVDARNEQGKFTSFNDFLAKVPAVVCNK 896 Query: 880 RVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 R +ES++ AGA D G++R L+ Q+++++ +K + + E F S Sbjct: 897 RTIESMIKAGAFDQLGHTRRSLVMCHEQAVEDV-----VAQKKKEDNGEFTFDIFSMGGS 951 Query: 936 DKITLEKFSVENSSV-RFEN------EQRVLGFYFSGHPL 968 + E FSVE V +E E+ +LG Y S HPL Sbjct: 952 EDDEQETFSVEVPDVPEWERKDLLAFEREMLGLYVSDHPL 991 >gi|225163584|ref|ZP_03725893.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] gi|224801819|gb|EEG20106.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] Length = 1183 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 372/967 (38%), Positives = 549/967 (56%), Gaps = 59/967 (6%) Query: 8 SPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SPS F+HL VH+ YSLL+G+ ++ ++ + Q AIA+TD N+F A+ F +A AG Sbjct: 3 SPSDFIHLHVHTDYSLLDGSCRVDRLMSRAKELGQTAIALTDHGNMFGAISFYNEAKKAG 62 Query: 67 IQPIIGCQLDIDMQDNLKMTNQ---GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 I+P+IGC+ I L+ T + GK+ + + +L EGYQ L++LVS +L Sbjct: 63 IKPLIGCEFYIAPGSRLEKTGKSEDGKSYY----HLGVLARNLEGYQNLLKLVSDAHL-- 116 Query: 124 QG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 +G R L L ++GLI TG + + + + + A + ++FG + Sbjct: 117 KGFYYKPRADLETLARY-SKGLIGFTGCLASEVCQNLMHDRFEDARAACARYVEIFGREN 175 Query: 182 LYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 +V +Q H G R+ +++L L ++ATN+ ++ ED HD L+ + Sbjct: 176 YFVEIQDH-GIPEQRKIIPGLLKLGEEFGLKVIATNDVHYIRSEDANPHDALLCIQTGAK 234 Query: 240 VSQKDRPRV-TPDHYLKNRSEMVSIFS-DLPEALENTVEIARRC--SFILQVHAPILPRF 295 +++++R + T + YLK+R EM IF +LPE+L NT+ +A C S + PR+ Sbjct: 235 LAEENRMKFDTQEFYLKSRDEMFKIFGRELPESLTNTLAVAEMCDLSIPFPKGSERYPRY 294 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQG--------------------AIAKGYHAQ 335 + L V GL+ R A + Sbjct: 295 PLPAEIKARYSASQYLHQLCVEGLKHRYGHDHDPVALRPVVAERLAKLHNLAPGQKPAPP 354 Query: 336 DYRQ---------RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 DY + R+ +E +I F YFL+V DFI WAK++ IPVGPGRGSGAG + Sbjct: 355 DYTELAPEEVLVLRMGYEQAIINVTGFVDYFLVVWDFINWAKQHTIPVGPGRGSGAGCLV 414 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY L IT+IDP+RF LLFERFLNP+R+S PDFDIDFC RR+EVI YV+ KYG++ VA I Sbjct: 415 AYLLGITNIDPIRFGLLFERFLNPERVSPPDFDIDFCMRRREEVINYVRQKYGNDCVANI 474 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLAD 505 IT+G+L AK A+RD+ R + ++ DR+ K+IP + +SL+ +I R + Sbjct: 475 ITYGTLGAKMAIRDIARVHDLAFADADRISKMIPEEIG--ISLEDSIKKSEELRTEISRN 532 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P R+++ + +EGL R+ HAAGI+I D+PL VP+ D+ V QF+M I K Sbjct: 533 PMTKRIIDTALVVEGLVRNTGKHAAGIIITDQPLDDFVPLTSQ-EGDVTV-QFDMGAITK 590 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQR--GVK-VDLSLIPFDDHETYHLLTTKGTLGIFQ 622 GL+K DFLGLKTLT++ ++D + G K D+ IP DD +TY LL T+G+FQ Sbjct: 591 LGLLKMDFLGLKTLTIISDAVDNVRHTVPGQKDFDIDTIPLDDPKTYELLNAGKTVGVFQ 650 Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682 LES GM+ A + ++DI A+ +LYRPGP+ I Y K I H L++P+L Sbjct: 651 LESPGMQNASRQVGISTVDDINAISALYRPGPMQFIPDYARGKKDPANITYPHKLLEPVL 710 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGI 741 KET G+I+YQEQVM+ A++++GY+L AD+LRRAMGKK E M +++ +F+SGA + + I Sbjct: 711 KETFGIIVYQEQVMECARVIAGYTLGGADMLRRAMGKKDAEAMAQERVKFVSGAKEHHNI 770 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 + A IF+LL KFA YGFNKSH+AAYAV++YQTA++K +YPV+F+AA +T E+ N EK Sbjct: 771 DEKKANEIFDLLNKFAQYGFNKSHSAAYAVVAYQTAYLKANYPVQFMAAVLTAELGNAEK 830 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADK 860 + F +A + ++ P +N +F ++I + LA IKGVG ++ I+ E A+ Sbjct: 831 VAHFIAEAEAMGLTVLGPDINESGANFTPVGDKIRFGLAGIKGVGEGASQKIIAEREANG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 P+ +DF RVD+K N+RVLE L GA D G SR + +D A K+R Sbjct: 891 PYKDFDDFTLRVDNKSANKRVLEHLAKTGAFDFSGESRKAIFARVDAALASAVLQAKDRA 950 Query: 921 NKHENIF 927 F Sbjct: 951 AGQSGFF 957 >gi|260906536|ref|ZP_05914858.1| DNA polymerase III subunit alpha [Brevibacterium linens BL2] Length = 1185 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 390/1076 (36%), Positives = 580/1076 (53%), Gaps = 73/1076 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA L +++ A AIA TD LF A +F +A AAGI+PI Sbjct: 6 FVHLHVHTEYSMLDGAARLTDLMAATKASGMSAIATTDHGYLFGAFDFWSQATAAGIKPI 65 Query: 71 IGCQLDI----DMQDNLKM---TNQGK-----TPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IG + + D +D ++ T++ + + + LL G + L + S Sbjct: 66 IGVEAYVTPGTDRRDKTRVKWRTDESQKRDDLSGGGAYTHMTLLSRNNTGMRNLFKASSY 125 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 L + RI L E +EGLI TG SG I + A ++++F Sbjct: 126 ASLDSVFSKWPRIDQDLL-ETYSEGLIATTGCPSGEIQVRLRLGQYEEARAAAGKYREMF 184 Query: 179 G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G D YV L H ++ +++L+ ++PLVATN+ + E D +AH+ L+A+ Sbjct: 185 GKDNYYVELMDHGLSIEKRVTKDLIRLSKEMDIPLVATNDLHYTHESDAKAHEALLAIQS 244 Query: 237 STVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + + + + +YLK+ +EM ++FS+ PEA +NT+EIA +C A Sbjct: 245 GSKLIEPTYDQGGSRFAFSGSGYYLKSGAEMRALFSEFPEACDNTLEIAEKCEVSFDTSA 304 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P+F +D E + L + GLE R G D R++ D+EL+VI Sbjct: 305 NYMPKFPCPPGED----ETSWLVKEVQTGLEYRYPGGI------PDDVRKQADYELDVII 354 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPL+ L FERFLN Sbjct: 355 SMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDLDPLKHGLFFERFLN 414 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+SMPDFD+DF RR EVI YV KYG ERVA I+T+G+++ K AL+D R L P+ Sbjct: 415 PDRVSMPDFDVDFDDRRRGEVIDYVTRKYGDERVAMIVTYGTIKTKMALKDSARVLGKPF 474 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIAD-----------DSRFREARLADPSVDRLLEISQKL 518 S +RL K +P PA +AD FRE +DP E ++ + Sbjct: 475 SMGERLTKALP--PAEMAKDIPLADIENAESKRYNEAGEFREFVDSDPDARETFETAKGI 532 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R HAAG+++ P+ ++P+ R + +TQF+ E GLIK DFLGL+ Sbjct: 533 EGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLRN 592 Query: 579 LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ +++ + A R + L + DD Y LL+ TLG+FQL+ G+R L M+P Sbjct: 593 LTIISDAVENIKANRDYDLGLEHLDLDDRGAYDLLSRGDTLGVFQLDGGGLRALLRLMKP 652 Query: 638 DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIY 691 D EDI A ++LYRPGP+ D+ + RKNG +++ IHP L +P+ L T G+IIY Sbjct: 653 DNFEDISATIALYRPGPMGADSHTNFALRKNGLQEVTPIHPELEEPLEDILGTTYGLIIY 712 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ+ F G + G S+ A +++ Sbjct: 713 QEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQQVGFFGGMKERGYSEAAAQALWD 772 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L F+DY FNK+H+AAY ++SY TA++K HY E++AA +T DN +K+ + + R+ Sbjct: 773 ILLPFSDYAFNKAHSAAYGLVSYWTAFLKAHYTAEYMAALLTSVGDNKDKLAIYLNECRR 832 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCS 870 I ++PP VN + F I + + A++ VG I+EA +K + S DF Sbjct: 833 LGITVLPPDVNDSALHFTPVGEDIRFGMGAVRNVGANVVDGIVEARGEKGAYTSFTDFLD 892 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 +V S N+R +ESL+ AG D G +R L++ + V++ N ++FA Sbjct: 893 KVPSHVCNKRTIESLIKAGGFDSLGQTRRSLVEVHEEAVDSVIGVKRQEANGQFDLFAGL 952 Query: 931 KG-----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 G +FS I + + FE + ++G Y S HPL+ + +L E Sbjct: 953 GGDDDEPSFSVAIPDRPEWEKKEKLAFERD--MIGLYVSDHPLNGLEGVLAAES----EA 1006 Query: 986 SVATI--------RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 S+A + G+ +++ M+ +K ++ G VT + E E FF Sbjct: 1007 SIAEVVDPESHRHDGSQVKICGMITQVSRKVSKNSGKPYAIVTVEDLNAEVEVMFF 1062 >gi|283780088|ref|YP_003370843.1| DNA polymerase III subunit alpha [Pirellula staleyi DSM 6068] gi|283438541|gb|ADB16983.1| DNA polymerase III, alpha subunit [Pirellula staleyi DSM 6068] Length = 1192 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 372/991 (37%), Positives = 566/991 (57%), Gaps = 40/991 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS YSLL+GA S+ +L + A+A+TD NL ALEF KA A GI PI Sbjct: 6 FVHLHCHSHYSLLDGASSVPKLLKRAKEHGMSALALTDHGNLHGALEFYNKAKALGINPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I + + + + + LL +G++ LI+L S L + R Sbjct: 66 IGYEAYIAPGSRFEKKDAANSKEASY-HLTLLAQNRQGFKNLIKLASAASL-EGFYYKPR 123 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-----QVAEKRLLTFKKLFGDRLYVN 185 I LQ +EG+I L+G S A + A++ F K+FGDR ++ Sbjct: 124 IDKEILQA-HSEGIICLSGCVSSEFSNAVLRGHGGDKELKDAQEIAGWFHKVFGDRYFLE 182 Query: 186 LQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + + G D R++ V +A LPLVAT+++ + ED EA DVL+ V + Sbjct: 183 IMNN-GIDIQRFQLEGAVDVAKKMGLPLVATSDAHYAYAEDAEAQDVLLCVNTGKFRTDT 241 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKE 299 +R ++ YL++ EM F L +A+ + EIA L++ H P+ P EK Sbjct: 242 NRMKMENGSFYLRSAEEMYEHFHGLEDAVARSQEIADSVHIDLELGKRHFPVYPIPPEKT 301 Query: 300 CDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +D LR V GL+ R A + + G ++ RL+ ELNVI ++ F YF Sbjct: 302 AEDY-------LRELCVQGLKERYAGDEEMLPGGELSEVVVARLERELNVINKLGFPNYF 354 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DF++ A++ ++P RGSG G++ +AL ++ + P+++ LLFERFL+ +R PD Sbjct: 355 LIVWDFVRHAREQDVPA-TARGSGVGALVCFALYLSHVCPIKYDLLFERFLDLNRKEAPD 413 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DIDFC+DRR ++IRYV++KYG VAQI TFG+L A+AA++DVGR L +P +V+++ Sbjct: 414 IDIDFCKDRRGDIIRYVKDKYGESNVAQIGTFGTLAARAAIKDVGRVLGIPMERVNKVTA 473 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 ++P D H A+ + DP V +L+++ ++EGL R+ THAA +VI D+ Sbjct: 474 MVP-DELHIHLSDALEKSDELKAVYNGDPDVREMLDLAMRIEGLARNVGTHAAAVVIADK 532 Query: 538 PLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595 PL++ VP+ R +SD+ +TQ++M +E AGL+K DFLGL+ LT+L K+++ + Q G + Sbjct: 533 PLTEYVPLGRVGGKSDI-ITQWSMGDVEAAGLLKMDFLGLRNLTILSKAVEIIQQTTGKR 591 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD P DD T+ LL T GIFQLES G+R L+ M+PD DIIA +LYRPGP+ Sbjct: 592 VDPYKFPLDDKRTFALLQRGETKGIFQLESGGIRDLLQKMKPDHFRDIIATNALYRPGPL 651 Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 + +V Y K+G+++ IHP+ + +L ET GV++YQEQVM+I L G L+ + + Sbjct: 652 EGGMVADYVAVKHGRKQAEYIHPVCEKILSETNGVMVYQEQVMRILNELGGIELAASYTV 711 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 +A+ KK ++ ++K K +F+ GA + GI++ A + + L+ KFA YGFNKSH+ AYA+I+ Sbjct: 712 IKAISKKKEDLINKNKVQFLKGAVEKGITEKQADDFWNLIIKFAGYGFNKSHSTAYALIA 771 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDN-----VEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y TA++K HYPVEF+AA ++ ++ + + + +D + I + PP+VN VDF Sbjct: 772 YMTAYLKAHYPVEFMAALLSGDIQGRNFKTKDSLVEHLEDCTRMGITVQPPNVNESNVDF 831 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D +I + L+AIKG G + I+ A + PF L DFC RVD+ ++ +E+L+ Sbjct: 832 AVKDGKILFGLSAIKGCGGSAGESIVAARTKGGPFRDLFDFCERVDATGSSKGTIETLIK 891 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFS 944 AGA DCFG R Q ++ + Q V +R + +N+F E+ + + TL Sbjct: 892 AGAFDCFGARRSQQFAIVERAIQSGQSVAADRKSGQKNLFGAFEEEEPSKAKSTTLPDVP 951 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 S E+ VLGFY S HPLD +K L Sbjct: 952 ELASKEMATQEKEVLGFYLSSHPLDEHKRTL 982 >gi|254442121|ref|ZP_05055597.1| DNA polymerase III, alpha subunit subfamily, putative [Verrucomicrobiae bacterium DG1235] gi|198256429|gb|EDY80737.1| DNA polymerase III, alpha subunit subfamily, putative [Verrucomicrobiae bacterium DG1235] Length = 1259 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 389/1107 (35%), Positives = 602/1107 (54%), Gaps = 108/1107 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+G + PA+A+TD NLF A++F + GI+P+ Sbjct: 9 FVHLHNHTHYSLLDGCAKPLRAAQRCLELGMPALAMTDHGNLFGAIDFYRSCKKVGIKPL 68 Query: 71 IGCQL---------DIDMQDNLKMTNQGKTPFPTVPSIV-----------LLVSTAEGYQ 110 IGC+L + ++ + + G P VP ++ EGYQ Sbjct: 69 IGCELYYVNDHKQSERPRRERKRTDDIGDIPEHYVPPKEDFPKYQIHHKGVIAKNFEGYQ 128 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L +LVS ++ + R + L + ++GLI L+G +G + + + A K Sbjct: 129 NLCKLVSDAHI-NGVYYKPRADIETLAKY-SKGLIGLSGCINGVAAQYLIYGDEENARKA 186 Query: 171 LLTFKKLFG-DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 TF +FG + ++ +Q H G R +++LA +L ++ N+S ++ +ED Sbjct: 187 TATFVDIFGKENYFIEIQDH-GMPVQRRIIPGLLKLAKEFDLKVICANDSHYVYKEDANP 245 Query: 228 HDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL- 285 HD L+ + ++ ++R + + + YLK+R EM IF ++PE+L+NTV +A + Sbjct: 246 HDALLCIQTGKIIEDENRMKYPSQEFYLKSRQEMYEIFKEVPESLDNTVHVAEMVDLEIP 305 Query: 286 --QVHAPIL---PRFIEKECDD----------------------------IQKEEENELR 312 + H P+ P K DD +E N + Sbjct: 306 FDEDHYPVFECPPELGYKSDDDAFDRILDIYELEKTKVNKQNGDDTVCKLTAEERANHKK 365 Query: 313 NKAV------AGLEVRLA------QGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGY 356 N V GL+ R + K +D+ + ++DF+L +I F Y Sbjct: 366 NGFVLLDLCKKGLKERYGVDYDDRASYVPKEGEREDFAEFVCDQMDFQLAIITGTGFVDY 425 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFI +A+ IPVGPGRGSGAG + AY L ITDIDPLRF LLFER LN +R+S P Sbjct: 426 FLIVWDFINFARSQGIPVGPGRGSGAGCIIAYVLKITDIDPLRFGLLFERMLNLERVSPP 485 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC RRD V+ YV+ KYGH+ VA IITFG+ AK +RD+ R + +++ D++ Sbjct: 486 DFDIDFCMRRRDVVVNYVREKYGHDSVANIITFGTFGAKMIVRDLARVNNLQFAEADKIA 545 Query: 477 KLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP++ +SL ++ S R +P +++E + +EG+ R+ HA GI+IG Sbjct: 546 KMIPDELN--ISLDDSVEKSSDLRNEIAVNPVAKKIVEHGKVIEGMVRNTGKHACGIIIG 603 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594 D+P+ LVP+ DL TQ+ E GL+K DFLGLKTLT++ + D + A R + Sbjct: 604 DQPIHNLVPVTLQ-EGDL-TTQYPKGPSEDLGLLKMDFLGLKTLTVISDAQDNIQATRNL 661 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 D+ + +D +TY LL T+G+FQLES GM+ + + E+IIAL++LYRPG Sbjct: 662 PDFDIEKVTLEDPKTYDLLNAGNTVGVFQLESGGMQNLCKQIGLSVFEEIIALIALYRPG 721 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+ I + K +KI HPL++ ++ ET GV++YQEQVM+ A++++GY+L AD+L Sbjct: 722 PMQFIPQFIEGKRDPKKIQIPHPLLEELVSETYGVLVYQEQVMESARIIAGYTLGGADML 781 Query: 714 RRAMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 RRAMGKKI M+ QK+ F+ GA + +GI + A+NIF +L KFA YGFNKSH+AAYA++ Sbjct: 782 RRAMGKKIASVMEAQKQIFVDGAKATHGIKEKEALNIFAILEKFAQYGFNKSHSAAYAML 841 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN------TPCV 826 SY+TA++K +YPVEF+AA ++ E+ N +K+ F +A I+++ P +N TP + Sbjct: 842 SYRTAYLKANYPVEFMAALLSAELGNADKVSHFIDEANSMGIRVLSPDINKSKEMFTPVI 901 Query: 827 DFK--VGDNR---IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRR 880 D + + D + I + + A+KGVG + A+ I+ E A+ P++ +++ RVD+K +N+R Sbjct: 902 DSEEDIADGKLGSIVFGMGAVKGVGDSAAKTIIAERDANGPYEGMDELLERVDTKSVNKR 961 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSD 936 VLE+L+ GA D G R L L+ A ++++ E+ F K + Sbjct: 962 VLENLIKTGAFDFTGEPRGSLFHRLEGAMNQAAEAQRDKERGQESFFDMIVEEPKEKDAP 1021 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 + L K + +R+E E +LGFY SGHPLD YK I + ++ S G+ + Sbjct: 1022 QWDLSKQFTKTEMLRYEKE--LLGFYVSGHPLDEYKGIAE--ALTNFDLSKVDQLGDKVE 1077 Query: 997 LAAMVVSKQ--QKKTRKGSRIGWVTFS 1021 A V+ +K +RK +R W FS Sbjct: 1078 FQACGVAGGVVKKLSRKDNR-PWAFFS 1103 >gi|29839841|ref|NP_828947.1| DNA polymerase III subunit alpha [Chlamydophila caviae GPIC] gi|29834188|gb|AAP04825.1| DNA polymerase III, alpha subunit [Chlamydophila caviae GPIC] Length = 1242 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 373/1078 (34%), Positives = 592/1078 (54%), Gaps = 62/1078 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + + K Q P++A+TD NL+ A+EF ++ I+P Sbjct: 2 TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECRQNDIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + K+ ++LL +GY+ L L+S + + Sbjct: 62 IIGCEIYVAPTSRFDKKKERKSRVAN--HLILLCKNEQGYRNLC-LLSSLAFTEGFYYFP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L + +EGL+ L+ SG + +A S + EK LL ++ LFGD Y +Q H Sbjct: 119 RIDRELLSQ-HSEGLVCLSACLSGSVAQAAL-ESEEALEKDLLWYQNLFGDDFYSEIQLH 176 Query: 190 R----------------GYDRYRESQV----VQLAYTHELPL--VATNNSLFLSEEDYEA 227 + Y ++ E+Q+ LA + L + VATN+ ++ D+ A Sbjct: 177 KMSEEKIASLGEEWLKHEYHQFIEAQIKVNQAVLATSRRLGIRSVATNDIHYIHPNDWLA 236 Query: 228 HDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 H++L+ V ++ + + K + + ++Y K+ EM +F+D PE + NT+E+ Sbjct: 237 HEILLNVQIGETIRIAKQNTYIPNPKRKAFRSREYYFKSPEEMALLFADHPETISNTLEV 296 Query: 278 ARRCSFILQV---HAPI-LPRFIEKECDDIQKEEENE-----LRNKAVAGLEVRLAQ--- 325 A +C+ L + H PI +P F+ KE +EE LR GL + Sbjct: 297 ADKCNLSLNLSSKHYPIYVPEFL-KEKQTYTEEERYAASSTFLRELCEQGLFTKYTAEQL 355 Query: 326 GAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 I+K + +D ++RL+ E+++I Y LIV D I+WAK N IPVGPGRGSG Sbjct: 356 AHISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIRWAKDNGIPVGPGRGSG 415 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + Sbjct: 416 AGSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKD 475 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501 VAQIITFG+++AK A++DVGR L +P S+V+ + K IP + +A+ D E Sbjct: 476 NVAQIITFGTMKAKMAVKDVGRTLDVPLSKVNHIAKHIPE--MNTTLAKALETDPHLNEL 533 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 D ++L+++ LEG R+ HAAG++I L+ +P+ S + TQF+MK Sbjct: 534 YTNDSEAAQVLDMAMHLEGSIRNTGVHAAGVIICGDHLTNHIPICISKDSTMITTQFSMK 593 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E G++K DFLGLKTLT + ++ + ++ G ++++ +P DD T+ LL T+GI Sbjct: 594 PVESVGMLKVDFLGLKTLTSIHIAIQAIQKKTGKLLEMASLPLDDKTTFALLHQGKTMGI 653 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ+ES GM++ + + PD E+IIA+ +LYRPGP+D I + +RK+GKE I HPL++ Sbjct: 654 FQMESKGMQELAKNLCPDSFEEIIAIGALYRPGPMDMIPSFISRKHGKEIIEYDHPLMES 713 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M +++ +F A KNG Sbjct: 714 ILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIQQMLQERTKFCERACKNG 773 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E Sbjct: 774 IDADLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIE 833 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860 K+ K +A +I I+PP +N +F D I +++ AI+G+G I+E Sbjct: 834 KVGKLIHEAHSMDICILPPDINESGTNFVATDKGIRFAMGAIRGIGKGLVESIVEEREKH 893 Query: 861 -PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 P+ S++DF R D KK+ ++ E+L+ AG D F R +L+ + +K Sbjct: 894 GPYQSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFESDRDVAQATLETLYDTISKEKKEA 953 Query: 920 TNKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 F+ ++ L + + + E+ +LG Y + HP+D K IL Sbjct: 954 ATGVMTFFSLNTMHQEHRVALPPATNVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILP 1013 Query: 977 KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033 ++ + E G+ IR ++ + + KG R + ++ YE +P Sbjct: 1014 QLSVVNSGEFENLPHGSVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1071 >gi|110597394|ref|ZP_01385681.1| DNA polymerase III, alpha subunit [Chlorobium ferrooxidans DSM 13031] gi|110340938|gb|EAT59409.1| DNA polymerase III, alpha subunit [Chlorobium ferrooxidans DSM 13031] Length = 1191 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 370/1014 (36%), Positives = 566/1014 (55%), Gaps = 65/1014 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YS+ + + A ++A+TD +F+ E +A AGI+ I Sbjct: 3 FVHLHAHTHYSMQSSPIFPGELFSAAAGFGMKSVAVTDYCAIFNMPELFYEAKNAGIKLI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG +L + L+ + PT PS+VLLV GY+ L L+SR D + Sbjct: 63 IGSELLL-----LESDTHQHSRIPTSPSLVLLVQNDTGYRNLCILLSRA-AKDGFVNGMP 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 S L E +GL+ L+ SSG I RA + AE ++++FGD Y+ LQ+H+ Sbjct: 117 HIESRLLEHYHDGLVCLSAYSSGRIGRALLAGAIDEAETFAAYYQEIFGDNFYLELQQHQ 176 Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQKDRPRV 248 +D + + LA + LVATNN +L +D + ++A + SQ + Sbjct: 177 APFDEKLNRETIALAEKLSIELVATNNVHYLERKDAGCYRAMVANRTKEKLSSQNLQALA 236 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 DHYLK+ EM +FSD L N++ IA +C++ P+LP F E ++E Sbjct: 237 GSDHYLKSSDEMSRLFSDEHRELSNSLLIAEKCTYTFCQKEPVLPHFPLPEG---FQDEF 293 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L + G + + A A+G ++ + R++ EL VI +M FS YFLIV+D I ++ Sbjct: 294 TYLSHLTWEGAKEKYADSE-AEGISKEEVKSRIELELGVIEKMGFSSYFLIVSDLIAASR 352 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 VGPGRGS AGS+ AY IT IDPLR+ LLFERFLNP+R SMPD DIDF + Sbjct: 353 TLGYSVGPGRGSAAGSIVAYLTGITRIDPLRYKLLFERFLNPERSSMPDIDIDFTPVGKQ 412 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +V+ Y KYG E VA++I G+L AKAA+RD GR L++P VD+L KL+P P ++ Sbjct: 413 KVLEYTVEKYGTESVAKVIAIGTLGAKAAIRDAGRVLEVPLPLVDKLAKLVPTKPG--IT 470 Query: 489 LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY- 546 L+ A+ + + ++ + P + L+ ++ LEG R+ S HA +VI PL + VP+Y Sbjct: 471 LEKALHESNELKQFSESSPEIRELVRYARALEGRARNVSMHAGAVVITSGPLEEQVPLYV 530 Query: 547 -----RDVRS-------DLP----------------VTQFNMKWIEKAGLIKFDFLGLKT 578 +VR D P VTQF+ WIE AGL+K D+LGL+T Sbjct: 531 SNKIETEVRKFADEIDLDEPGPGSMKGSDGVDEKQLVTQFDKNWIETAGLLKIDYLGLET 590 Query: 579 LTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 L ++ ++L + +R + ++L +P +D +T+ + GIFQ ESSGM+ + +QP Sbjct: 591 LAVIDETLRMIKRRYDLDIELEKVPMNDRKTFKIFQEGKMAGIFQFESSGMQSYMTRLQP 650 Query: 638 DCIEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 I DIIA+ +LYRPG ++ N V ++ +RK+G+E I +HP+++ +LKET GVI Sbjct: 651 TQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREAIDYMHPMLEEILKETYGVI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI+Q++ G+SL++AD LR+AMGKK+ E M+K K F+ GA G+ T+A + Sbjct: 711 VYQEQVMQISQVMGGFSLAKADNLRKAMGKKMPEIMEKYKADFVQGAIAQGVHDTLATRV 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 FEL+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A + E+ + E++K +A Sbjct: 771 FELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAVLNSEIGDTERMKHLTDEA 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDN------RIYYSLAAIKGVGTTTARHIMEASA--DKP 861 + F I +PPS+N F V D+ I L+AIK VG AR ++ + + Sbjct: 831 KSFGISTLPPSINKSDALFSVEDSDDGRSCSIRVGLSAIKQVG-GAARAVVTSKLRRKRD 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +L D + VD + +NR+ LE L+ AGA D R +L+ ++D K+ Q ++ T Sbjct: 890 FQNLFDLAASVDLRVMNRKALECLILAGAFDEIDQHRARLIANVDKAIKFGQMQNRSVTL 949 Query: 922 KHENIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 F E+G ++ +++ + + +E++++GFY S HPL Y+ Sbjct: 950 GQCGFFTAEEGALLEEEHYPDMDQAEPMAEAEKLLHEKKLVGFYLSHHPLSPYR 1003 >gi|320531635|ref|ZP_08032577.1| DNA polymerase III subunit alpha [Actinomyces sp. oral taxon 171 str. F0337] gi|320136164|gb|EFW28170.1| DNA polymerase III subunit alpha [Actinomyces sp. oral taxon 171 str. F0337] Length = 1197 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 373/1077 (34%), Positives = 585/1077 (54%), Gaps = 70/1077 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA + + + + QPA+AITD +F A EF A AAGI+PI Sbjct: 16 FVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEFYAAATAAGIKPI 75 Query: 71 IGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 IG + + + Q + ++ +G + + LL EG L+ Sbjct: 76 IGVEAYMTPGTSRFDKTRVFWGDESQRSDDVSARG-----SYTHMTLLSRNNEGLHNLMR 130 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 + S L Q ++ RI L + GLI TG S + A + Sbjct: 131 MDSFASLEGQWGKAPRIDRELLSRY-SGGLIGSTGCPSSEVQTRLRLGQWDEALRTAGEL 189 Query: 175 KKLFGDRL-YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG YV L H R ++ +++LA PL+ATN+S ++ ED D ++ Sbjct: 190 QDIFGKEFFYVELMDHGLEIEQRVTKDLLRLAQEIGAPLLATNDSHYVRPEDRTIQDAML 249 Query: 233 AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288 + +V+S DR R D +YL+ SEM +FS++P+A +NT+ +A +C + Sbjct: 250 CINSGSVLSDPDRFRFDGDTYYLRPGSEMRRLFSEMPQACDNTLLVAEQCDVHFRTVDEG 309 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 A +P F E + +E+ + G++ R G +D R++ ++E++VI Sbjct: 310 ASFMPAFPVPEGE----TDESWFIKECWRGMDHRF------NGDIPEDCRKQAEYEISVI 359 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR L+FERFL Sbjct: 360 TQMGFPGYFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIFERFL 419 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D R + P Sbjct: 420 NPERISMPDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRVMGYP 479 Query: 469 YSQVDRLCKLIPND-PAHPVSLQAI--ADDSR------FREARLADPSVDRLLEISQKLE 519 Y+ DRL K +P +S++ I DD R FR+ DP +++E+++ LE Sbjct: 480 YAVGDRLTKAMPPSVQGKDISIKGIFNPDDERYGEAEEFRKLHAEDPDAQKIVELAKGLE 539 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGL+ L Sbjct: 540 GMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLGLRNL 599 Query: 580 TLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +L+ + G +D+ + DD TY LL+ TLG+FQL+ GMR L M+PD Sbjct: 600 TVISDALENIVANGKPALDIDHVELDDRATYELLSRGETLGVFQLDGGGMRTLLRLMKPD 659 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQ 692 EDI A+ +LYRPGP+ ++ Y RKNG +++V IHP +DP+L T G+I+YQ Sbjct: 660 NFEDISAVGALYRPGPMGAESHTNYALRKNGLQEVVPIHPELKDALDPILGTTHGLIVYQ 719 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM+IA L+G+S+ +AD LR+AMGKK + + K F +G + G SK ++++ Sbjct: 720 EQVMKIATDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQAGFSKESVKTLWDV 779 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+ + + R Sbjct: 780 VVPFAKYAFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGECRHM 839 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871 I ++PP VN F D + + L+A++ VG I+ A +K F S EDF + Sbjct: 840 GITVLPPDVNASRAQFSAVDEDVRFGLSAVRNVGINVVDAIVAAREEKGEFTSFEDFLDK 899 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + N+R ++SL+ AGA D G++R L ++ V++N ++FA Sbjct: 900 VPAVVCNKRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLFASLV 959 Query: 932 G--TFSDKITLEKFSVENSSV----------RFENEQRVLGFYFSGHPLDVYKPILRKMG 979 G +D V +S V + E+ +LG Y S HPL + +L K+ Sbjct: 960 GGPDDADDSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLLGKLA 1019 Query: 980 ---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I E+ G + +A ++ S +K T++G+ + A E FFP Sbjct: 1020 DKEISELHENDELPDGAMVTIAGLITSLTRKTTKQGNLWAIAQVEDLAGSVEVLFFP 1076 >gi|309812629|ref|ZP_07706373.1| putative DNA polymerase III subunit alpha [Dermacoccus sp. Ellin185] gi|308433324|gb|EFP57212.1| putative DNA polymerase III subunit alpha [Dermacoccus sp. Ellin185] Length = 1182 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 389/1083 (35%), Positives = 576/1083 (53%), Gaps = 80/1083 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +S SFVHL H+ YS+L+GA ++++ + PAIA TD LF A EF K+ Sbjct: 4 QSKSFVHLHNHTEYSMLDGAARIDDMFARAQEFGMPAIATTDHGYLFGAYEFWSKSRKYD 63 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQRLI 113 ++PIIG L+ M T++ +T + + LL EG L Sbjct: 64 VKPIIG--LEAYMTPGTHRTDKTRTTWGERGQEADDVSNRGLYTHMTLLAKNNEGMHNLF 121 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 + S+ L + R+ L GT G+I TG SG I A + Sbjct: 122 RMGSQASLDQVYSKYPRLDRELLNAYGT-GIIGTTGCPSGEIQTRLRLGQYDKAREAAAE 180 Query: 174 FKKLFGD-RLYVNLQRHR---GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 F+ +FGD Y L H +R S +++LA LPL+ATN+ + ++ED HD Sbjct: 181 FRDIFGDGNFYCELMEHDLDVDIERRVRSDLLKLAKDLNLPLLATNDLHYTNKEDAVHHD 240 Query: 230 VLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQV 287 L+ + + ++ +R + + + YLK+ EM +F D P+A +NT+ IA +C + Sbjct: 241 ALLCINSGSRLTDPNRFKFGSHEFYLKSADEMRHLFRDHPDACDNTLLIAEQCEVSFTEG 300 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR-QRLDFELN 346 +PRF E +D E + + GL R +G DY ++ +E + Sbjct: 301 EGRYMPRFPCPEGED----ETSWFIKEVETGLRRRFPEGV-------PDYAVKQAKYEQD 349 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI + GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+ L+FER Sbjct: 350 VIIGKGYPGYFLVVADFINWAKRNGIRVGPGRGSGAGSMCAYAMGITDLDPVPHGLIFER 409 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R SMPDFD+DF + RR EVIRYV +KYG +RV+ I+T+G+++AK A++D R + Sbjct: 410 FLNPERQSMPDFDVDFDERRRSEVIRYVVDKYGEDRVSYIVTYGTIKAKQAVKDASRVMD 469 Query: 467 MPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLADPSVDRLLEISQK 517 P++ +++ K +P D V L + D+S FRE +DP+ + + Sbjct: 470 FPFAIGEQMTKAMPADVMGKGVPLAKMYDESHPRYAEGGEFRELIASDPTFKNIFDAGVG 529 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R HAAG+++ PL ++P+ R ++ +TQF+ E GL+K DFLGL+ Sbjct: 530 LEGLKRQWGVHAAGVIMSSEPLIDVIPIMRRLQDGAVITQFDYPSCETLGLVKMDFLGLR 589 Query: 578 TLTLLQKSL-DFLAQRGVKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEG 634 LT+L +L + A R +DL + D D +TY LL TLG+FQL+ GMRQ L Sbjct: 590 NLTILDDALKNIKANRDEDIDLDALSKDMTDAKTYDLLARGDTLGVFQLDGGGMRQLLRL 649 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNN--RKNGKEKIVSIHP----LIDPMLKETQGV 688 MQPD EDI A ++LYRPGP+ N RKNGK++I IHP ++P+L T G+ Sbjct: 650 MQPDNFEDISAALALYRPGPMGANAHTNFALRKNGKQQIDYIHPELTEALEPILNMTYGL 709 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 IIYQEQVM+IAQ L+GY+L AD+LRRAMGKK KE +D + F G NG SK Sbjct: 710 IIYQEQVMEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVNFEKGMLDNGFSKESVQT 769 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++ +L F+DY FNK+H AAY ++SY T ++K +YP E++AA +T D+ +K + + Sbjct: 770 LWSILLPFSDYAFNKAHTAAYGLVSYWTGYLKANYPAEYMAALLTSVRDDKDKSALYLNE 829 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLED 867 R I+++PP VN +F I + L AI+ VG+ I+ A +K F S ED Sbjct: 830 CRHMGIKVLPPDVNESIGNFAAVGEDIRFGLEAIRNVGSNVVAAIIAAREEKGRFTSFED 889 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH--EN 925 F + + LN+R +ESLV AGA D G+ R L+Q ++ +++ R +H ++ Sbjct: 890 FLRKCPATVLNKRTVESLVKAGAFDDLGHQRQGLVQIHESYVD--ALIDEKRKEEHGQDS 947 Query: 926 IFAHEKGTFSDKITLEKFSV--------ENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 +FA F D +F+ + + E+ +LG Y S HPL + L + Sbjct: 948 LFA----GFGDDAPGIEFAALPQIPPIEWDKQTKLAFEREMLGLYVSDHPLFGIEAALAQ 1003 Query: 978 MGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 + SVA + G + +A ++ Q K+T+KG T + E Sbjct: 1004 FS----DTSVARLLAEDALPDGATVTIAGLITGLQIKRTKKGDLWAIATVEDMDGAIECL 1059 Query: 1031 FFP 1033 FFP Sbjct: 1060 FFP 1062 >gi|269219520|ref|ZP_06163374.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269211099|gb|EEZ77439.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 1175 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 376/1069 (35%), Positives = 578/1069 (54%), Gaps = 64/1069 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YS+L+GA + ++ + A Q A+AITD F A EF ++ A G++PI Sbjct: 5 FAHLHVHTEYSMLDGAAKIKKLVAQAKAQNQKAVAITDHGYCFGAYEFYKECKAQGVKPI 64 Query: 71 IGCQLDID------MQDNLKMTNQGK-----TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IG + + D + +G+ + + LL +G L + SR Sbjct: 65 IGVEAYMTPGTSRFGSDRVLWGEEGQRADDVSARGAYTHLTLLAYNNKGLHNLFRMDSRA 124 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID---RAFFFNSSQVAEKRLLTFKK 176 L Q + R+ + L E EGLI G SG + R F+ + A R+ + Sbjct: 125 SLEGQMGKWPRMDMDLL-ETYHEGLIATAGCPSGEVQTRLRLGQFDEAYEAAGRM---QD 180 Query: 177 LFG-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 LFG + YV + H ++ ++++ LA + PL+ATN+S ++ D D ++ + Sbjct: 181 LFGKENYYVEVMDHDNSIEKRVRNELLDLARKIDAPLIATNDSHYVEAGDAPIQDAMLCI 240 Query: 235 AHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAP 290 + + DR Y L++ EM +F DLP A ENT+ +A RC+ A Sbjct: 241 NSGSTLQDPDRFTFDGTGYHLRSSEEMHELFGDLPGACENTLLVAERCNVSFTTADEGAN 300 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 +P F E +D+ E+ GL VR + A D R+R D+E++VI + Sbjct: 301 YMPVFPVPEGEDLTSWFVKEVDR----GLHVRFGERIPA------DVRERADYEVSVILQ 350 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYFL+V+D+I WAK+N I VGPGRGSGAGS+ AYAL IT++DP+R LLFERFLNP Sbjct: 351 MGFPGYFLVVSDYILWAKRNGIRVGPGRGSGAGSMVAYALQITELDPIRHGLLFERFLNP 410 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPD D+DF + RR EVI YV+ KYG E+V+Q++TFG+++ K AL+D R L P+ Sbjct: 411 ERVSMPDIDVDFDERRRGEVIEYVEKKYGAEKVSQVVTFGTIKTKQALKDSARVLGYPFE 470 Query: 471 QVDRLCKLIP-----NDPA----HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 +R+ K +P D A H + + FR+ D ++ E++Q L GL Sbjct: 471 MGERMTKALPPTVQGKDIALADIHNEKAERFVEAGDFRQLVAGDQDASKVFELAQGLAGL 530 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA +++ PL ++P+ + +TQF E+ G++K DFLGL LT Sbjct: 531 TRQWGVHACAVLMCSEPLMDVIPIMKRPSDGATITQFEYPLCEELGVLKMDFLGLSNLTT 590 Query: 582 LQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 ++ +LD + G +V + + DD T+ LL TLG+FQL+ SGMR L+ M+P Sbjct: 591 IEDALDNIVYNGKERVAIEEVELDDQPTFELLQRADTLGVFQLDGSGMRALLKQMRPTEF 650 Query: 641 EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQ 694 EDI A+ +LYRPGP +++ Y RKNG ++I IHP ++ L+E T G+I+YQEQ Sbjct: 651 EDISAVSALYRPGPMGMNSHTSYALRKNGLQEIAPIHPELEEPLREILAPTYGLIVYQEQ 710 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VMQIA++ +G+++ +AD LR+AMGKK + + KQ E F +G NG SK ++E+L Sbjct: 711 VMQIARVCAGFTMGQADTLRKAMGKKKLDVLQKQFEGFSAGMLANGYSKECVDRLWEILV 770 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSH+A Y VISY TA++K +YPVEF+AA +T + DN +K+ + + R+ I Sbjct: 771 PFAQYAFNKSHSACYGVISYWTAFLKANYPVEFMAALLTSKKDNKDKLALYLGECRRMGI 830 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 ++ P VN DF ++ + L+A++ VG I+ A +K F S +DF +V Sbjct: 831 TVLVPDVNDSDSDFSAVGEQVRFGLSAVRNVGANVVEGILGARREKGAFTSFQDFLDKVP 890 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---E 930 + N+R +E LV AGA D GYSR LL ++ ++KN ++F + Sbjct: 891 LQVCNKRAIECLVKAGAFDSMGYSRKALLAKVEEAVDSVVSLKKNEAAGQFDLFGGADVD 950 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG----IKGYEES 986 G D + + + V+ ++E+ +LG Y S HPL + +L + ++ E Sbjct: 951 LGAGVD-VVVPDIPEWDKKVKLDHERDMLGLYVSDHPLSGMEHVLDRAADTTIVRLMNEE 1009 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYEANFFP 1033 +I+ + LA ++ S Q + ++K ++ W T + E NFFP Sbjct: 1010 --SIQEGFVSLAGLITSVQPRVSKKNGKL-WATIILEDLTGSAEINFFP 1055 >gi|145628379|ref|ZP_01784180.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21] gi|144980154|gb|EDJ89813.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21] Length = 847 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 323/719 (44%), Positives = 449/719 (62%), Gaps = 32/719 (4%) Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 Y +RL EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+D Sbjct: 9 YDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLD 68 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 PL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V YG V+QIITFG++ AKA Sbjct: 69 PLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKA 128 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516 +RDVGR L PY VDR+ KLIP DP ++ +A + + + A +D V L+++++ Sbjct: 129 VIRDVGRVLGHPYGFVDRISKLIPLDPGMTLA-KAFEAEPQLQTAYDSDEEVQALIDMAR 187 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 KLEG+ R+A HA G+VI ++ P+Y D PVT F+ +E AGL+KFDFLGL Sbjct: 188 KLEGVTRNAGKHAGGVVISPTLITDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGL 247 Query: 577 KTLTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 +TLT+++ +LD + R V +VD++ IP DD E++ LL T +FQLES GM+ Sbjct: 248 RTLTIIKWALDMINVRMVREGKPRVDIAAIPLDDPESFELLKRAETTAVFQLESRGMKDL 307 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKE 684 ++ +QPDC EDIIALV+L+RPGP+ + +V N +RK+G+E++ H + P+L+ Sbjct: 308 IKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREEVSYPDAEYQHESLKPILEP 367 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F GA KNG+ Sbjct: 368 TYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMAKQRSVFKEGAVKNGVDGE 427 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTH+P EF+AA MT EMDN +KI Sbjct: 428 LSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVG 487 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-F 862 + + +++ PP +N F V + I Y + AIKGVG ++ A + F Sbjct: 488 LYDECLRMGLKVTPPDINVGKHHFSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIF 547 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 L D C+RVD KK+NRR ESL+ +GA D G R L ++L++ K + K+ Sbjct: 548 KDLFDLCARVDLKKINRRTFESLIMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMG 607 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVR---------FENEQRVLGFYFSGHPLDVYKP 973 ++F T D VEN+ + E+ LG Y S HP+ Y Sbjct: 608 QTDMFGVLTETHED--------VENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLK 659 Query: 974 ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 L ++ RG +A ++VS + T+KG+R+G T + + + F Sbjct: 660 ELSHYTSTRLKDLAPNRRGQISTVAGLLVSSRIAITKKGNRLGIATLDDRSGRLDLTLF 718 >gi|313637979|gb|EFS03276.1| DNA polymerase III subunit alpha [Listeria seeligeri FSL S4-171] Length = 962 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 366/999 (36%), Positives = 572/999 (57%), Gaps = 47/999 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S+++++ K PA+AITD N L+ A+EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ T GY L+++ S + ++G++ Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAETTAGYHELLKIASAIQTREEGQE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ +E LI ++ G+ G ++R + A + +FG D +Y++LQ+ Sbjct: 110 LPQSWLRAY-SEDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + ++ ++ VAT N ++ +D +A +VL A+ + V + P Sbjct: 169 ---NPRLFGKIETFCTEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ +D + E T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQEEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRF----PLNADQSAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR A AGLE R G A DY++RLD+EL VI M F+ YFLIV D I++++ Sbjct: 282 EVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ ++ Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--IT 451 Query: 489 LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 LQ AI ++ R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 452 LQKAIQENPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQL 511 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 512 G-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLEDE 570 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T T G+FQ ES G+R+ L ++P EDI+A+ +LYRPGP++ I + RK+ Sbjct: 571 KTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKH 630 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKE I HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + ++ Sbjct: 631 GKEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLN 690 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +++ F+ GA G S++ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP Sbjct: 691 EERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPAA 750 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845 F+++ ++ N +KI ++ +A+ + I+++ PS+N F++ G+N I YS I+ V Sbjct: 751 FMSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQMEGENAIRYSFRVIRKV 810 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 T I+ PF DFC R+ K L +LE+LV +G D FG R +L ++ Sbjct: 811 PTKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLATI 870 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +Y + ++ +K N+FA E F K+ S+ + E E+ G Y Sbjct: 871 DAVLQYISLLGED--SKGMNLFA-EDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYV 927 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMV 1001 S HP+ Y+ L+ + I +A I G N R+A V Sbjct: 928 SAHPVSYYQTKLQNLAIT----RLADIHSGKNYRVAVYV 962 >gi|328947381|ref|YP_004364718.1| DNA polymerase III subunit alpha [Treponema succinifaciens DSM 2489] gi|328447705|gb|AEB13421.1| DNA polymerase III, alpha subunit [Treponema succinifaciens DSM 2489] Length = 1213 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 378/1055 (35%), Positives = 569/1055 (53%), Gaps = 76/1055 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL VHS YS+L+GA ++ ++ + PA+A+TD N+F +L F + GI P Sbjct: 18 NFVHLHVHSDYSILDGASKIDTLVARAKELNMPALALTDHGNMFGSLNFEKLCHVNGINP 77 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRMYLLD 123 I+G + + + T PF ++LL GY+ + L S Y Sbjct: 78 IVGEEFYVAWGSH---TEHNDVPFGRNGKNSHYFHLILLCENQTGYKNMSWLSSIAYTEG 134 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182 RI L++ EGLI L+ G + + + A + +K+LFG DR Sbjct: 135 LYYGKPRIDFELLKKY-HEGLICLSACIQGELPQLLLNGREEDAYRVAKEYKELFGPDRY 193 Query: 183 YVNLQRHRGYDRYRESQV--VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ +Q H G D +E V ++L+ ++PLV TN+ + +++D EA D L + ++ Sbjct: 194 YIEIQDH-GLDEQKEVAVNLIKLSKDLDIPLVLTNDVHYCNKDDAEAQDALRCIGFKKLL 252 Query: 241 SQKDRPRVT-----PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHAP---- 290 D P T + YLK EM +F + PEA+ NT++IA C+ I Q P Sbjct: 253 ---DEPHQTMGGGRKEWYLKTEQEMSILFPNYPEAMANTIKIANMCNLTIHQYTTPELKG 309 Query: 291 ILPRF---IE-KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 LPRF IE ++ +D + +++ +R GL VR + Q R+R ++EL Sbjct: 310 CLPRFSLPIEFQKHEDYTENQDDYVRCLVEKGLRVRYPE-------ITQAIRRRCEYELG 362 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 +I +M FSGYFLIV +FI WAK++ IP+GPGRGSGAGS+ AY +TITDIDP RF L+FER Sbjct: 363 IIFKMGFSGYFLIVWEFINWAKEHGIPIGPGRGSGAGSLVAYCMTITDIDPFRFKLIFER 422 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPDFDID D R +I++ + YG +V I+TFG+L+ K L DVGR L Sbjct: 423 FLNPERVSMPDFDIDMDFDFRQNIIQHTRETYGEPQVGHIVTFGTLKPKNCLADVGRILN 482 Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP--------------SVDRLL 512 +P S V ++ IP++P + +F + P + DR + Sbjct: 483 IPLSIVTKVKACIPDNPKAKLKNALEPPTDKFPDGGQLIPISENPETTIGLDKKTFDRWI 542 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + +KLEGL R+ HA+G+VIG L P+++D ++ Q+ M IE GL+KFD Sbjct: 543 ALCKKLEGLIRNTGLHASGMVIGLTALPDWAPVFKDPKTGEVAVQYTMDIIEPCGLVKFD 602 Query: 573 FLGLKTLTLLQKSLDFLAQRGVKVDLSL----IPFDDHETYHLLTTKGTLGIFQLESSGM 628 +LGLKTL+L++ + + + + + + D ET+ L ++ IFQ ES GM Sbjct: 603 YLGLKTLSLIRYAENIINKHKKPDEPEFKTENVSETDSETFDLFCRGDSVAIFQFESPGM 662 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 ++ L QP C+E+++AL +LYRPGP+D I Y K E + P ++ +LKET GV Sbjct: 663 QKILRQCQPRCVEELVALNALYRPGPLDYIPQYIEGKWKPETVHYPDPCLEGILKETYGV 722 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 ++YQEQVMQ+AQ ++G+SL AD+LRRAMGKK E + +K F GA K G +K A Sbjct: 723 MVYQEQVMQVAQKIAGFSLGGADMLRRAMGKKKLEVLMGKKVEFEEGAIKQGYTKEHADE 782 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 IF+++ FA YGFNKSHAAAY V++Y+T W+KTH EF+AA++T E+ + + + ++ ++ Sbjct: 783 IFDIMVPFAGYGFNKSHAAAYTVLAYRTGWLKTHKKAEFMAANLTNEITSTDTLPEYIEE 842 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867 AR+ I + PP VN F V D I + L IKG+G AR I+E + P+ S D Sbjct: 843 ARKMGIPVDPPDVNRSDSIFDVIDGHIVFGLKGIKGMGEGAARAIVEEREKNGPYKSFVD 902 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F R+ SK +N++ +E L+ GA D G +R L + + + +Y +KN + ++ Sbjct: 903 FIERLSSKDVNKKAIEVLIKTGAFDNLGQNRATLTMNFERVIEYED--KKNASKEYGQAS 960 Query: 928 AHEKGTFSDKITLEKFSVENSS-----VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 E + E F E R E+ ++G + SGHPLD YK + Sbjct: 961 LFEDAGIKE---FEDFKFEECEDLPKMERLNMEKELIGCFVSGHPLDDYKTAI------- 1010 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 E+ AT NI A + ++ R W Sbjct: 1011 --ETCATCNSENIERWAKIDKAEKASLESSGRSSW 1043 >gi|306818530|ref|ZP_07452253.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus mulieris ATCC 35239] gi|304648703|gb|EFM46005.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus mulieris ATCC 35239] Length = 1273 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 371/1052 (35%), Positives = 579/1052 (55%), Gaps = 64/1052 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VH+ YS+L+GA + +++K A + Q A+AITD LF A EF A G+ Sbjct: 6 SSDFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVKTGV 65 Query: 68 QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114 +PIIG + + L+ G + + LL T EG L Sbjct: 66 KPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHNLFR 125 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S + Q + R+ LQ GL+ +G SG + A + Sbjct: 126 LGSLASIDGQMGKWPRLDRELLQRYAG-GLVGTSGCPSGEVQVKLRLGLYDEALRTAGEL 184 Query: 175 KKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG Y+ L H +R +++LA + PL+ATN+S ++++ED E D ++ Sbjct: 185 QDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQDAML 244 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288 + ++ ++R R D+YL+ +EM +F DLP+A +NT+ +A +C Sbjct: 245 CINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTVDDG 304 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 A +P+F ++ EE+ + GL R QG + R+R D+E+ +I Sbjct: 305 ASFMPKFQVPAGEN----EESWFVKEVERGLNYRYPQGI------TEAVRKRADYEVGII 354 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F+GYFL+V+D+IQWAK+ I VGPGRGSGAGS+ AYA+ ITD+DPL+ LLFERFL Sbjct: 355 LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 414 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR EVI YV KYG +++AQ++T+G+++ K AL+D R Sbjct: 415 NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 474 Query: 469 YSQVDRLCKLIPNDPAH-----PVSLQAIADDSRFREAR-----LADPSVDR-LLEISQK 517 +S + L K +P PA P+S D R++EA +A ++ + ++ Sbjct: 475 FSVGENLTKALP--PAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASG 532 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EG+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGLK Sbjct: 533 VEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLK 592 Query: 578 TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ +LD + G DL +P DD TY LL++ TLG+FQL+ GMR L+ ++ Sbjct: 593 NLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLR 652 Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVII 690 P +DI ALV+LYRPGP+ D+ Y RKNG I IHP L DP+ L T G+II Sbjct: 653 PTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLII 712 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G NG S+ ++ Sbjct: 713 YQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLW 772 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D +K+ + + R Sbjct: 773 DILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNEVR 831 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869 + I+++PP VN F I + LA+I+ VG I+++ DK + S +DF Sbjct: 832 RMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFL 891 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 ++V ++ N+R +ESL+ AGA D FG +R L+ + +++ + ++FA Sbjct: 892 NKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFAS 951 Query: 930 EKGTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 G D LE FSVE ++ + E+++LG Y S HPL + +LR++ Sbjct: 952 LDGGGDD--LLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQ 1009 Query: 983 YEESVATIRGNN---IRLAAMVVSKQQKKTRK 1011 E + N +R+A ++ S + K +++ Sbjct: 1010 IIELTSEDGKPNDAEVRIAGLITSVEHKTSKR 1041 >gi|227875268|ref|ZP_03993410.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|227844173|gb|EEJ54340.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] Length = 1273 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 371/1052 (35%), Positives = 579/1052 (55%), Gaps = 64/1052 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VH+ YS+L+GA + +++K A + Q A+AITD LF A EF A G+ Sbjct: 6 SSDFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVKTGV 65 Query: 68 QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114 +PIIG + + L+ G + + LL T EG L Sbjct: 66 KPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHNLFR 125 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S + Q + R+ LQ GL+ +G SG + A + Sbjct: 126 LGSLASIDGQMGKWPRLDRELLQRYAG-GLVGTSGCPSGEVQVKLRLGLYDEALRTAGEL 184 Query: 175 KKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG Y+ L H +R +++LA + PL+ATN+S ++++ED E D ++ Sbjct: 185 QDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQDAML 244 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288 + ++ ++R R D+YL+ +EM +F DLP+A +NT+ +A +C Sbjct: 245 CINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTVDDG 304 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 A +P+F ++ EE+ + GL R QG + R+R D+E+ +I Sbjct: 305 ASFMPKFQVPAGEN----EESWFVKEVERGLNYRYPQGI------TEAVRKRADYEVGII 354 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F+GYFL+V+D+IQWAK+ I VGPGRGSGAGS+ AYA+ ITD+DPL+ LLFERFL Sbjct: 355 LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 414 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR EVI YV KYG +++AQ++T+G+++ K AL+D R Sbjct: 415 NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 474 Query: 469 YSQVDRLCKLIPNDPAH-----PVSLQAIADDSRFREAR-----LADPSVDR-LLEISQK 517 +S + L K +P PA P+S D R++EA +A ++ + ++ Sbjct: 475 FSVGENLTKALP--PAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASG 532 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EG+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGLK Sbjct: 533 VEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLK 592 Query: 578 TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ +LD + G DL +P DD TY LL++ TLG+FQL+ GMR L+ ++ Sbjct: 593 NLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLR 652 Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVII 690 P +DI ALV+LYRPGP+ D+ Y RKNG I IHP L DP+ L T G+II Sbjct: 653 PTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLII 712 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G NG S+ ++ Sbjct: 713 YQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLW 772 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D +K+ + + R Sbjct: 773 DILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNEVR 831 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869 + I+++PP VN F I + LA+I+ VG I+++ DK + S +DF Sbjct: 832 RMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFL 891 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 ++V ++ N+R +ESL+ AGA D FG +R L+ + +++ + ++FA Sbjct: 892 NKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFAS 951 Query: 930 EKGTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 G D LE FSVE ++ + E+++LG Y S HPL + +LR++ Sbjct: 952 LDGGGDD--LLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQ 1009 Query: 983 YEESVATIRGNN---IRLAAMVVSKQQKKTRK 1011 E + N +R+A ++ S + K +++ Sbjct: 1010 IIELTSEDGKPNDAEVRIAGLITSVEHKTSKR 1041 >gi|307700773|ref|ZP_07637798.1| DNA polymerase III subunit alpha [Mobiluncus mulieris FB024-16] gi|307613768|gb|EFN93012.1| DNA polymerase III subunit alpha [Mobiluncus mulieris FB024-16] Length = 1270 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 371/1052 (35%), Positives = 579/1052 (55%), Gaps = 64/1052 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VH+ YS+L+GA + +++K A + Q A+AITD LF A EF A G+ Sbjct: 3 SSDFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVKTGV 62 Query: 68 QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114 +PIIG + + L+ G + + LL T EG L Sbjct: 63 KPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHNLFR 122 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S + Q + R+ LQ GL+ +G SG + A + Sbjct: 123 LGSLASIDGQMGKWPRLDRELLQRYAG-GLVGTSGCPSGEVQVKLRLGLYDEALRTAGEL 181 Query: 175 KKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG Y+ L H +R +++LA + PL+ATN+S ++++ED E D ++ Sbjct: 182 QDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQDAML 241 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288 + ++ ++R R D+YL+ +EM +F DLP+A +NT+ +A +C Sbjct: 242 CINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTVDDG 301 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 A +P+F ++ EE+ + GL R QG + R+R D+E+ +I Sbjct: 302 ASFMPKFQVPAGEN----EESWFVKEVERGLNYRYPQGI------TEAVRKRADYEVGII 351 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F+GYFL+V+D+IQWAK+ I VGPGRGSGAGS+ AYA+ ITD+DPL+ LLFERFL Sbjct: 352 LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 411 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR EVI YV KYG +++AQ++T+G+++ K AL+D R Sbjct: 412 NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 471 Query: 469 YSQVDRLCKLIPNDPAH-----PVSLQAIADDSRFREAR-----LADPSVDR-LLEISQK 517 +S + L K +P PA P+S D R++EA +A ++ + ++ Sbjct: 472 FSVGENLTKALP--PAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASG 529 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EG+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGLK Sbjct: 530 VEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLK 589 Query: 578 TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ +LD + G DL +P DD TY LL++ TLG+FQL+ GMR L+ ++ Sbjct: 590 NLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLR 649 Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVII 690 P +DI ALV+LYRPGP+ D+ Y RKNG I IHP L DP+ L T G+II Sbjct: 650 PTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLII 709 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G NG S+ ++ Sbjct: 710 YQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLW 769 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D +K+ + + R Sbjct: 770 DILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNEVR 828 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869 + I+++PP VN F I + LA+I+ VG I+++ DK + S +DF Sbjct: 829 RMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFL 888 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 ++V ++ N+R +ESL+ AGA D FG +R L+ + +++ + ++FA Sbjct: 889 NKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFAS 948 Query: 930 EKGTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 G D LE FSVE ++ + E+++LG Y S HPL + +LR++ Sbjct: 949 LDGGGDD--LLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQ 1006 Query: 983 YEESVATIRGNN---IRLAAMVVSKQQKKTRK 1011 E + N +R+A ++ S + K +++ Sbjct: 1007 IIELTSEDGKPNDAEVRIAGLITSVEHKTSKR 1038 >gi|269978157|ref|ZP_06185107.1| DNA polymerase III subunit alpha [Mobiluncus mulieris 28-1] gi|269933666|gb|EEZ90250.1| DNA polymerase III subunit alpha [Mobiluncus mulieris 28-1] Length = 1270 Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust. Identities = 371/1052 (35%), Positives = 579/1052 (55%), Gaps = 64/1052 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VH+ YS+L+GA + +++K A + Q A+AITD LF A EF A G+ Sbjct: 3 SSDFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVKTGV 62 Query: 68 QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114 +PIIG + + L+ G + + LL T EG L Sbjct: 63 KPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHNLFR 122 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S + Q + R+ LQ GL+ +G SG + A + Sbjct: 123 LGSLASIDGQMGKWPRLDRELLQRYAG-GLVGTSGCPSGEVQVKLRLGLYDEALRTAGEL 181 Query: 175 KKLFGDRL-YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG Y+ L H +R +++LA + PL+ATN+S ++++ED E D ++ Sbjct: 182 QDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQDAML 241 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288 + ++ ++R R D+YL+ +EM +F DLP+A +NT+ +A +C Sbjct: 242 CINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTVDDG 301 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 A +P+F ++ EE+ + GL R QG + R+R D+E+ +I Sbjct: 302 ASFMPKFQVPAGEN----EESWFVKEVERGLNYRYPQGI------TEAVRKRADYEVGII 351 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F+GYFL+V+D+IQWAK+ I VGPGRGSGAGS+ AYA+ ITD+DPL+ LLFERFL Sbjct: 352 LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 411 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR EVI YV KYG +++AQ++T+G+++ K AL+D R Sbjct: 412 NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 471 Query: 469 YSQVDRLCKLIPNDPAH-----PVSLQAIADDSRFREAR-----LADPSVDR-LLEISQK 517 +S + L K +P PA P+S D R++EA +A ++ + ++ Sbjct: 472 FSVGENLTKALP--PAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASG 529 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EG+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGLK Sbjct: 530 VEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLK 589 Query: 578 TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ +LD + G DL +P DD TY LL++ TLG+FQL+ GMR L+ ++ Sbjct: 590 NLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLR 649 Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVII 690 P +DI ALV+LYRPGP+ D+ Y RKNG I IHP L DP+ L T G+II Sbjct: 650 PTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLII 709 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G NG S+ ++ Sbjct: 710 YQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLW 769 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D +K+ + + R Sbjct: 770 DILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNEVR 828 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869 + I+++PP VN F I + LA+I+ VG I+++ DK + S +DF Sbjct: 829 RMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFL 888 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 ++V ++ N+R +ESL+ AGA D FG +R L+ + +++ + ++FA Sbjct: 889 NKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFAS 948 Query: 930 EKGTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 G D LE FSVE ++ + E+++LG Y S HPL + +LR++ Sbjct: 949 LDGGGDD--LLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQ 1006 Query: 983 YEESVATIRGNN---IRLAAMVVSKQQKKTRK 1011 E + N +R+A ++ S + K +++ Sbjct: 1007 IIELTSEDGKPNDAEVRIAGLITSVEHKTSKR 1038 >gi|229826056|ref|ZP_04452125.1| hypothetical protein GCWU000182_01420 [Abiotrophia defectiva ATCC 49176] gi|229789798|gb|EEP25912.1| hypothetical protein GCWU000182_01420 [Abiotrophia defectiva ATCC 49176] Length = 1160 Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust. Identities = 369/1071 (34%), Positives = 586/1071 (54%), Gaps = 81/1071 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL +H+ +SLL+G+ ++ ++ ++ A AITD ++ +EF + A GI+P Sbjct: 2 SFTHLHLHTGFSLLDGSSKISELVKRVKELGMDACAITDHGVMYGVIEFYKACKAEGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + N + + ++LL G++ L+++VSR + + Sbjct: 62 IIGCEVYV--APNSRFEKGTEKSAKRYNHLILLAENDTGHKNLMKIVSRGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 R+ L+E EG+I + +G + + A+ L + +FG+ ++ LQ Sbjct: 119 RVDYELLREY-HEGIIASSACLAGIVPTKLREGDYEGAKAEALRLRDVFGENNFFLELQD 177 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++++ +PL+ATN+ +L +ED EAHDVL+ + +V+ DR + Sbjct: 178 HGLPEQKFVNQGLMRISAETGIPLIATNDCHYLYKEDAEAHDVLICIQTQKIVTDDDRMK 237 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILP--------RF 295 Y+K+ EM IF +PEA++NT +IA RC+ ++ H P P + Sbjct: 238 YEGGQFYVKSPEEMKEIFHYIPEAIKNTEKIAERCNVEIEFGKYHLPEYPVPEGYTALSY 297 Query: 296 IEKECDD--------IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 + K C+D I +EENELR RL +E++ Sbjct: 298 LNKLCEDGFKSRYEGITGDEENELR--------------------------ARLKYEIDT 331 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I+ M F YFLIV D+I +AK+NNI VGPGRGS AGS+ AY L IT +DP++++LLFERF Sbjct: 332 ISNMGFVDYFLIVWDYINFAKENNIAVGPGRGSAAGSIVAYCLGITGVDPIKYNLLFERF 391 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R++MPD DIDFC RR EVI YV KYG E+V QI+TFG++ AK +RDVGRAL + Sbjct: 392 LNPERVTMPDIDIDFCVLRRQEVIDYVTEKYGREKVVQIVTFGTMAAKMVIRDVGRALDL 451 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 PYS D++ K+IPN+ + +A+ D+ + + +L+++S++LEGL RH S Sbjct: 452 PYSFCDKVAKMIPNELKMNID-KALKDNPDLMQLYEENEEAKKLIDLSRRLEGLPRHTSI 510 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HAAG+VI R + VP+ SD V TQ+ M+ IE+ GL+K DFLGL+ LT+++K++ Sbjct: 511 HAAGVVISKREVDSYVPI--STSSDGAVTTQYTMETIEQLGLLKMDFLGLRNLTVIEKAV 568 Query: 587 DFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 + + + K D+ I +D Y +++ T G+FQLES GM ++ ++PD IE Sbjct: 569 ELVNRNRRKSGQEDFDIEKIDMEDENIYLMISEGKTEGVFQLESPGMTSFMKKLRPDNIE 628 Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 DIIA +SLYRPGP++ I Y N K +I + P+LK T G I+YQEQVMQI + Sbjct: 629 DIIAGISLYRPGPMEFIDDYINGKRNSTEIEYDCEELKPILKSTYGCIVYQEQVMQIVRE 688 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELL 753 L+GYS ++D+LRRAM KK M ++++ F I G G+S+ +A I++ + Sbjct: 689 LAGYSYGQSDLLRRAMSKKKDSVMRQERQNFVYGDETKGIPGCVAKGVSEQVANKIYDKM 748 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FN+SHAAAYA I+YQTA++K +YP E++AA +T M N K+ ++ ++ Sbjct: 749 IDFAKYAFNRSHAAAYAFITYQTAYLKYYYPKEYMAALLTSVMSNTGKVSEYILSSKNMG 808 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872 I I+PP VN +F I Y ++AIKG+G I++ ++ + SL D R+ Sbjct: 809 IAILPPDVNEGEGNFTAVKEGIRYGMSAIKGLGENVTETIVKDREERGEYKSLSDLVERL 868 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHE 930 S LN++ LE+L+ +GALD +R + + + + + ++ ++F A + Sbjct: 869 -SGILNKKGLEALIKSGALDGLSGTRREKMAVYEQVLDSVSHEKHSKMAGQLSLFDIAPQ 927 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------- 983 + + ++ + + + E+ ++G Y SGHPL Y+ LR + Sbjct: 928 EDLSALEVKMPVLGEFDMETKLAFEKEMIGIYLSGHPLYDYQDFLRGICNTNSMDFAYDE 987 Query: 984 EESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 EE +R G N L + K TR R+ ++T + E FP Sbjct: 988 EEGRVNVRSGMNYVLGGIATGVNIKLTRNNQRMAFITLEDLVGNIEIIVFP 1038 >gi|182413909|ref|YP_001818975.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1] gi|177841123|gb|ACB75375.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1] Length = 1271 Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust. Identities = 391/1124 (34%), Positives = 594/1124 (52%), Gaps = 124/1124 (11%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+FVHL VHS YSLL+G+ ++ +L + AIA+TD NL+ A+EF + A A ++ Sbjct: 6 PNFVHLHVHSDYSLLDGSCRIDRLLKRTNELGMKAIALTDHGNLYGAIEFYKAAKDAQVK 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127 P+IGC+L + L+ + T+ + LL GYQ L++LVS +L +G Sbjct: 66 PLIGCELYLVEHSRLEKHGRSDDDGKTIFHLGLLARNLTGYQNLLKLVSDAHL--KGFYY 123 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R + L + GLI +G + + + + A K F ++FG + ++ L Sbjct: 124 KPRTDIETLAKYAG-GLIGFSGCLASLVPQHLLNDREDEARKACARFVEIFGRENYFIEL 182 Query: 187 QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Q H G R+ ++ LA +L ++ +N+ +++ D HD ++ + + + + Sbjct: 183 QDH-GIPEQRKIIPGLLDLAQEFKLQVICSNDVHYVNHGDAGPHDAMLCIQTGSKIDDEK 241 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-- 301 R R + YLK+R EM +F ++P +L NT +A C + P+ E+ Sbjct: 242 RMRFSGSQFYLKSREEMAQVFREVPASLTNTQLVADMCELAIP-----FPKGSERYPKYP 296 Query: 302 ---DIQKEEENELRNKAVAGLEVR-----------------------LAQGAIAKG---- 331 +I+ + L++ VAGL R L G + Sbjct: 297 LPPEIKTDRGGYLQDLCVAGLRRRYGVDYFAAASHPAAAERLDKLTNLPAGEKPQPPDYT 356 Query: 332 --YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 H ++ R+ +EL++I F YFL+V DFI WAK + +PVGPGRGSGAG + AY Sbjct: 357 GLTHEEELVVRMGYELSIIRVTGFIDYFLVVWDFIAWAKSHGVPVGPGRGSGAGCLVAYL 416 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L IT++DPLRF LLFERFLNP+R+S PDFDIDFC RR+EVI YV+ KYG + VA IIT+ Sbjct: 417 LGITNLDPLRFKLLFERFLNPERVSPPDFDIDFCMRRREEVINYVREKYGKDCVANIITY 476 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509 G+L AK +RDV R +P+++ DRL K+IP D + AIA + +P Sbjct: 477 GTLGAKMVIRDVSRVHNLPFAEADRLAKMIP-DELNITLTDAIAKSAELSSEIARNPVAK 535 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 ++++ + LEG+ R+ HAAGI+I D+PL VP+ D+ V QF+M + K GL+ Sbjct: 536 KIVDQALVLEGMVRNTGKHAAGIIITDQPLDDFVPLTLQ-EGDVTV-QFDMGAVTKLGLL 593 Query: 570 KFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGLKTLT++ ++D + + K D+ IP DD +TY +L T+G+FQLESSGM Sbjct: 594 KMDFLGLKTLTVIADAVDNVRRTADPKFDIETIPLDDPKTYAMLNAGKTVGVFQLESSGM 653 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 + A + + I+DI A+ +LYRPGP+ I Y K + HPL++ L+ET G+ Sbjct: 654 QSACKQVGVSNIDDINAICALYRPGPMQFIPDYARGKKDPSTVEYPHPLLEQSLQETYGI 713 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAV 747 I+YQEQVM+ A++++GY+L AD+LRRAMGKK E M K++ +F+ GA + N I + A Sbjct: 714 IVYQEQVMECAKIIAGYTLGGADMLRRAMGKKDAEAMAKERVKFVEGAKRVNAIDEKKAN 773 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 IF+LL KFA YGFNKSH+AAYA++SYQTA++K +YPV+F+AA +T E+ N EK+ F Sbjct: 774 EIFDLLNKFASYGFNKSHSAAYALVSYQTAFLKANYPVQFMAAVLTAELGNAEKVSHFIA 833 Query: 808 DARQFNIQIMPPSVN------TPCV---------------------------------DF 828 +A I ++ P +N TP + + Sbjct: 834 EAEAMGITVLGPDINESREMFTPVLRGASSPRAQSPESRVQSQADSELSALNSQLSAAEA 893 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 I + LA IKGVG A+ I+E + F +DF +R+D + +N+RVLE LV Sbjct: 894 DRAGGAIRFGLAGIKGVGELAAQKIIEERDKNGAFCDFDDFAARMDGRAVNKRVLEHLVK 953 Query: 888 AGALDCFGYSRMQLLQSLDN-------------------IQKYAQWVE-----KNRTNKH 923 GA D G R L +D + +A+ + KN +N H Sbjct: 954 TGAFDYSGAPRKPLFDGIDAALATVAARARDRAAGQHSFLDMFAEDLAPKKNGKNGSNGH 1013 Query: 924 ENIFAHEK-GTFSDKITLE-KFSVEN----SSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + + SD TL+ + S + S+ R E+ +LGFY SGHPL+V+ + Sbjct: 1014 GAATPSSRPASGSDFSTLDSQLSTSSDDFTSTERLTFEKELLGFYVSGHPLNVFAGLTEA 1073 Query: 978 MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + E + RL +V ++ ++K +R W +F+ Sbjct: 1074 IDTYPITELLNQGDRTEFRLCGIVSGIAKRLSKKDNRP-WASFT 1116 >gi|160939913|ref|ZP_02087260.1| hypothetical protein CLOBOL_04804 [Clostridium bolteae ATCC BAA-613] gi|158437347|gb|EDP15112.1| hypothetical protein CLOBOL_04804 [Clostridium bolteae ATCC BAA-613] Length = 1161 Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust. Identities = 384/1052 (36%), Positives = 592/1052 (56%), Gaps = 49/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + + + ++A+TD ++ ++F + A AGI+P Sbjct: 2 AFTHLHVHTEYSLLDGSCKIRELTARAKELGMDSMAVTDHGVMYGVIDFYKAAREAGIKP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+GC++ + + T G+ + +VLL +GY+ L+++VS+ ++ D Sbjct: 62 ILGCEVYVAPGSRFDRETVSGEDRYY---HLVLLAENNKGYENLMKIVSKGFV-DGFYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 R+ L+ EG+I L+ +G + R + A + + +FG D ++ LQ Sbjct: 118 PRVDYEVLRTY-HEGVIALSACLAGEVQRCLTRGMYEEAVRASEKYVDIFGKDNFFLELQ 176 Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H D+ +Q +++++ L LVATN+ + ED +AHD+L+ + V+ +DR Sbjct: 177 DHGLPDQKLVNQGLMRMSRDTGLKLVATNDIHYTFAEDEKAHDILLCIQTGKKVADEDRM 236 Query: 247 RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R +Y K+ EM ++F PEA+ENT IA RC+ ++ LP++ E D Sbjct: 237 RYEGGQYYCKSEEEMRALFPYAPEAIENTHMIAERCNVEIEFGVTKLPKYEVPEGFD--- 293 Query: 306 EEENELRNKAVAGLEVRLAQ--GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + L + G + R G ++ RLD+EL+VI M + YFLIV DF Sbjct: 294 -SWSYLNHLCREGFKTRYPDDDGTLS---------SRLDYELDVIRSMGYVDYFLIVWDF 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +A+ +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC Sbjct: 344 INYARSQDIIVGPGRGSAAGSIVSYTLGITNIDPVRYNLLFERFLNPERVSMPDIDIDFC 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG ++V QI+TFG+L AK +RDVGR L +PYS D + K+IP D Sbjct: 404 YERRQEVIDYVVRKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDLPYSLCDTIAKMIPGDL 463 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ + ++A D V L+++S++LEGL RH S HAAG+VIG R + + V Sbjct: 464 GMTLD-KALTMNPDLKKAYNEDEQVHYLIDMSRRLEGLPRHTSMHAAGVVIGSRSIDEFV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLI 601 P+ R TQF M IE+ GL+K DFLGL+TLT++Q ++ LA++ G+ +D+ I Sbjct: 523 PLSR-ASDGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVR-LAEKDYGITIDIDHI 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 FDD + + T T G+FQLES+GM+ ++ ++ + +EDIIA +SLYRPGP+D I Y Sbjct: 581 DFDDKKVLESIGTGRTEGVFQLESAGMKSFMKELKAENLEDIIAGISLYRPGPMDFIPKY 640 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 KN + I P ++P+L T G I+YQEQVMQI + L+GY++ +D++RRAM KK Sbjct: 641 LKGKNDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKK 700 Query: 722 KEEMDKQKERFISGAS--------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 M+K+++ F+ G+ NGI + A +I++ + FA Y FNKSHAAAYAV+S Sbjct: 701 TSVMEKERQNFVYGSQSEGVKGCVNNGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVS 760 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGD 832 YQTA++K +YP EF+AA MT MDNV K ++ R+ I ++PP +N F V Sbjct: 761 YQTAYLKYYYPREFMAALMTSVMDNVSKFSEYVLTCRRMMGIPVLPPDINEGESGFSVSG 820 Query: 833 NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 + I Y L+AIK VG I+ E + PF S+EDF R+ K++N+R LE+ + +GAL Sbjct: 821 DAIRYGLSAIKSVGKPVTEVILAERERNGPFRSMEDFVGRMSMKEVNKRTLENFIKSGAL 880 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSS 949 D +R Q + + + +K+ ++F A E+ +IT + Sbjct: 881 DTLPGTRRQKMAVAPTMLEEKAREKKSMFEGQLSLFDIAGEEDRNEFQITFPDVGEYSKD 940 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRK--------MGIKGYEESVATIRGNNIRLAAMV 1001 E+ +LG Y SGHPLD Y+ R+ + ++ G+ + +V Sbjct: 941 ELLAFEKEILGVYISGHPLDDYEDTWRRNITATSAQFIVDEETDAAGVADGSRAVIGGLV 1000 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K TR + ++T + E FP Sbjct: 1001 AGKTVKTTRTNQLMAFITLEDLLGPVEVIVFP 1032 >gi|312196291|ref|YP_004016352.1| DNA polymerase III subunit alpha [Frankia sp. EuI1c] gi|311227627|gb|ADP80482.1| DNA polymerase III, alpha subunit [Frankia sp. EuI1c] Length = 1178 Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust. Identities = 381/1073 (35%), Positives = 586/1073 (54%), Gaps = 64/1073 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL VH+ YS+L+GA L ++ +++ Q PA+AITD ++ A +F ++A AAG+ Sbjct: 2 SDSFVHLHVHTEYSMLDGAARLKDMFTEVSRQQMPAVAITDHGYMYGAYDFHKQATAAGV 61 Query: 68 QPIIGCQLDIDMQDNL-KMTNQGKTPF---------PTVPSIVLLVSTAEGYQRLIELVS 117 +PIIGC+ I + L K + P + + + AEG L L S Sbjct: 62 KPIIGCEAYIAPESRLLKQRVRWGEPHQKSDDVSGSGSYTHMTIWARNAEGLHNLFRLNS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 R + + R+ + E + GL+ TG SG + ++A K T++++ Sbjct: 122 RASIEGHYIKWPRMDREIISE-HSAGLMATTGCPSGEVQTRLRLGQPELALKAAATYQEI 180 Query: 178 FGDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG Y G + R +V +A + V TN+S + E + E H L+ V Sbjct: 181 FGPENYFCEIMDHGIEIERRVRDGLVDIARKLNMRFVVTNDSHYTYESERETHSALLCVQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSD-LPEALENTVEIARRC--SFILQVHAPI 291 ++ V+ ++LK+ +M +I +SD E + T+ IA R + + H + Sbjct: 241 TASTVANPSFQFEGSGYFLKSADQMRAIDYSDAWREGCDTTLLIAERVDTTGMFPKHN-L 299 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P + E + EE+ R + + G+E R G K +R ++++E+ VI +M Sbjct: 300 MPVYPTPEGE----TEESFFRAEVLRGMERRFPGGIDEK------HRTQVEYEIGVILQM 349 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL L+FERFLNP+ Sbjct: 350 GFPSYFLVVADFIMWAKNNGIAVGPGRGSAAGSLIAYALGITDLDPLPHGLIFERFLNPE 409 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF RR +VIRYV K+G +R+AQI+T+G+++AKAA++D R L PY+ Sbjct: 410 RVSMPDIDIDFDDRRRADVIRYVTEKWGEDRIAQIVTYGTIKAKAAIKDSARVLGYPYAV 469 Query: 472 VDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518 DR+ K +P DP HP ++ R +D V ++++ ++ L Sbjct: 470 GDRITKAMPPMVMGKDIPLPGIFDPNHP----RFSEAGEIRALYESDADVRKVIDTAKGL 525 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R A HAAG+++ P+ +P++R + +TQF+ E GL+K DFLGL+ Sbjct: 526 EGLIRQAGVHAAGVIMSAEPIIDHIPVWRRDADGVIITQFDYPTCENLGLLKMDFLGLRN 585 Query: 579 LTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ ++ + + RG+K+DL + DD TY LL+ TLG+FQL+ +R L M+P Sbjct: 586 LTVMDDAVRNVESNRGIKIDLLSLGLDDKTTYELLSRGDTLGVFQLDGGPLRSLLRLMRP 645 Query: 638 DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIY 691 D EDI A+++LYRPGP+ ++ Y RKNG+++I+ IHP +D +L T G+I+Y Sbjct: 646 DNFEDISAVIALYRPGPMGANSHTNYALRKNGQQEIIPIHPELGTALDEVLGTTYGLIVY 705 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVM IAQ++ GYSL +AD+LRRAMGKK KE +DK+ F +G NG S +++ Sbjct: 706 QEQVMAIAQVVGGYSLGQADLLRRAMGKKKKEILDKEFAPFSAGMKANGYSDAAIKTLWD 765 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 766 ILVPFSDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRR 825 Query: 812 FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869 I+++PP VN D+ G++ I LAAI+ VG I K P+ S DF Sbjct: 826 MGIKVLPPDVNISDADYTAHGESEIRVGLAAIRNVGINVVESITRTRRTKSPYTSFPDFL 885 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +V++ N+R +ESL+ AGA D FG++R L++ + V+K ++FA Sbjct: 886 DKVEAVVCNKRTIESLIKAGAFDSFGHTRRGLVEKHEQAVDAVMAVKKKTAEGQFDLFAF 945 Query: 930 EKGTFSDKITLE-------KFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 G D LE +FS + + +V NE+ +LG Y S HPL + +L Sbjct: 946 -GGDDEDGSPLETPGLGVGEFSEKEWDKAVLLSNEREMLGLYVSDHPLSGVEHVLAAKAD 1004 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V G + + ++ S Q+K T++G T + E FFP Sbjct: 1005 TTVANLVDYPDGAVVTIGGIISSLQRKVTKQGKVWALTTIEDLEGGLEVMFFP 1057 >gi|193215617|ref|YP_001996816.1| DNA polymerase III subunit alpha [Chloroherpeton thalassium ATCC 35110] gi|193089094|gb|ACF14369.1| DNA polymerase III, alpha subunit [Chloroherpeton thalassium ATCC 35110] Length = 1190 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 363/1015 (35%), Positives = 566/1015 (55%), Gaps = 69/1015 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL H+ YS+ + + + A+ +TD +++F+ E A ++ I Sbjct: 4 FIHLHTHTHYSMQSSTIMPGELFAECQKLDMAAVGVTDYSSMFNMPELFSYAKKHEVKLI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG +L + MT + + + ++LLV GY+ L +++S KQ R Sbjct: 64 IGAELFLVPG---AMTEKKEQ---VLYHLILLVKNETGYKNLCKILSAAARDGFYKQMPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + +Q+ EGLI LT G + + + A + +K LF D Y+ + H Sbjct: 118 ADFNLIQK-NAEGLICLTACREGELSQYILKDEIDKARDFVARYKNLFQDDFYIEMHSHN 176 Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D R ++ + LA + LVATN+ +L +ED + D L A+ + +S +R R+ Sbjct: 177 APDDARLNEAKIALAKEFGIKLVATNDVHYLKKEDAQYQDALQALKNKQTLSSPNRNRLP 236 Query: 250 PDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEE 307 +H YLK EM +F + L NT+EIA +C+F+ P LP F I E ++ + Sbjct: 237 TEHFYLKTPDEMARMFDNAQGELVNTLEIAEKCTFVFNDQQPHLPHFPIPSEFEN----D 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E LR+ G + + A G + R+R+++EL++I +M ++ YFLIV+D I + Sbjct: 293 EAYLRHLTYEGAKKKYGD-LDAMGEKGAEVRERIEYELSIICKMGYATYFLIVSDLISAS 351 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ VGPGRGS AGS+ AY IT +DP+++ LLFERFLNP+R+SMPD DIDF + Sbjct: 352 REMGYSVGPGRGSAAGSIVAYLTNITQVDPIKYKLLFERFLNPERVSMPDIDIDFTPVGK 411 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 V+ Y KYG VA++I G+L AKAA+RDVGR L + VD++ KL+P P + Sbjct: 412 QRVLDYTIKKYGAASVAKVIAVGTLGAKAAIRDVGRVLDINLQTVDKIAKLVPGKPG--M 469 Query: 488 SLQAIADDSR-FREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +L AD + F E + + + +L++ ++ LEG R+ S HAA +V+ D P+ ++VP+ Sbjct: 470 TLSKAADQVKEFAELESSPEQKIQKLMKFAKALEGRARNVSMHAAAVVVTDGPVEEVVPL 529 Query: 546 YRDVRSDLP----------------------------VTQFNMKWIEKAGLIKFDFLGLK 577 Y + + VTQF+ WIEKAGL+K D+LGL+ Sbjct: 530 YVSNKIETEERRYIDEFDEKSEKEKGKGKSGDDQKQVVTQFDKDWIEKAGLLKIDYLGLE 589 Query: 578 TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 TL ++ ++L + +R GV +DL +P DD + Y + GIFQ ES GM+Q + ++ Sbjct: 590 TLAVVDETLRLIQKRYGVTIDLESVPIDDKKAYKIFQEGKMAGIFQFESQGMQQYMMKLR 649 Query: 637 PDCIEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 P I DIIA+ +LYRPG ++ N V ++ +RKNG+EKI +HP++ +L+ET GV Sbjct: 650 PTVIGDIIAMSALYRPGALNARIDENRNAVDLFVDRKNGREKIEYMHPMLAEILEETYGV 709 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQVM ++Q++ G+SL++AD LR+AMGKK E M K K+ F+ GA + + K +A Sbjct: 710 IVYQEQVMLVSQVMGGFSLAKADNLRKAMGKKKPEIMAKFKDEFVEGAVEKSVDKAVATG 769 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 IF+L+A+FA YGFNKSH+AAY +++Y TA++K HY EF+AA + E + ++K + Sbjct: 770 IFDLMAEFAGYGFNKSHSAAYGILAYWTAYLKAHYTAEFMAAILNSEAGDTARMKHLTDE 829 Query: 809 ARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEA--SADKP 861 A+ I I+PPS+N F V G I +AIK VG AR I+ + +P Sbjct: 830 AKSMGIAILPPSINHSDALFMVEDIEKGKKAIRVGFSAIKHVG-GAAREIVRSRWRRKEP 888 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F L D CS VD + +N++ LE L+ AGALD F +R +L+ +L +Y Q K+ T Sbjct: 889 FADLFDLCSTVDLRVVNKKALECLIEAGALDEFDENRAKLIGNLPKAVEYGQKRNKSATL 948 Query: 922 KHENIFAHEKGTFSDKI----TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 E F +++ F+DK +E+F + + E E+ ++GFY S HPL+ Y+ Sbjct: 949 GQEGFF-NDENFFADKADAYPEMEEFEPWPDAEKLEREKNLIGFYVSTHPLEPYR 1002 >gi|329944570|ref|ZP_08292710.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328530123|gb|EGF57006.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 1197 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 371/1077 (34%), Positives = 581/1077 (53%), Gaps = 70/1077 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA + + + + QPA+AITD +F A EF A A GI+PI Sbjct: 16 FVHLHVHTDYSMLDGAGKVKDYVAEAKRLGQPALAITDHGYMFGAYEFYAAAKAVGIKPI 75 Query: 71 IGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 IG + + + Q ++ +G + + LL EG L+ Sbjct: 76 IGVEAYMTPGTSRFDKTRIFWGDESQRGDDVSARG-----SYTHMTLLSRNNEGLHNLMR 130 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 + S L Q ++ RI L G GLI TG S + A + Sbjct: 131 MDSFASLEGQWGKAPRIDRELLSRYGG-GLIGTTGCPSSEVQTRLRLGQWDEALRAAGEL 189 Query: 175 KKLFGDRL-YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG YV L H R ++ +++LA PL+ATN+S ++ ED D ++ Sbjct: 190 QDIFGKEFFYVELMDHGLEIEQRVTKDLLRLAQEIGAPLLATNDSHYVRPEDRTIQDAML 249 Query: 233 AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288 + +V+S DR R D +YL+ +EM +FS++P A +NT+ +A +C + Sbjct: 250 CINSGSVLSDPDRFRFDGDTYYLRPGAEMRRLFSEMPHACDNTLLVAEQCDVHFRTVDEG 309 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 A +P F E + +E+ + G++ R G +D R++ ++E++VI Sbjct: 310 ASFMPAFPVPEGE----TDESWFIKECWRGMDRRF------NGDIPEDCRKQAEYEISVI 359 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR L+FERFL Sbjct: 360 TQMGFPGYFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIFERFL 419 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D R + P Sbjct: 420 NPERISMPDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRVMGYP 479 Query: 469 YSQVDRLCKLIPND-PAHPVSLQAI--ADDSR------FREARLADPSVDRLLEISQKLE 519 Y+ DRL K +P +S++ I DD R FR+ DP +++++++ LE Sbjct: 480 YAVGDRLTKAMPPSVQGKDISIKGIFNPDDERYGEAEEFRKLHAEDPDAQKIVDLAKGLE 539 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGL+ L Sbjct: 540 GMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLGLRNL 599 Query: 580 TLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +LD + G +D+ + DD TY LL+ TLG+FQL+ GMR L M+PD Sbjct: 600 TVISDALDNIVANGKPALDIDHVELDDRGTYELLSRGETLGVFQLDGGGMRTLLRLMKPD 659 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQ 692 EDI A+ +LYRPGP+ ++ Y RKNG +++V IHP ++P+L T G+I+YQ Sbjct: 660 NFEDISAVGALYRPGPMGAESHTNYALRKNGLQEVVPIHPELKEALEPILGTTHGLIVYQ 719 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM+IA L+G+S+ +AD LR+AMGKK + + K F +G + G SK ++++ Sbjct: 720 EQVMKIATDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQAGFSKESVKTLWDV 779 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+ + + R Sbjct: 780 VVPFAKYAFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGECRHM 839 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871 I ++PP VN F D + + L+A++ VG I+ A +K F S EDF + Sbjct: 840 GITVLPPDVNASRAQFSAVDEDVRFGLSAVRNVGINVVDAIVAARREKGEFTSFEDFLDK 899 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + N+R ++SL+ AGA D G++R L ++ V++N ++FA Sbjct: 900 VPAVVCNKRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLFASLT 959 Query: 932 GTFS--DKITLEKFSVENSSV----------RFENEQRVLGFYFSGHPLDVYKPILRKMG 979 G D V +S V + E+ +LG Y S HPL + +L K+ Sbjct: 960 GGSDGEDSSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLLGKLA 1019 Query: 980 ---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I E+ G + +A ++ S +K T++G+ + A E FFP Sbjct: 1020 DKEISELHENDELPDGAMVSIAGLITSLTRKTTKQGNLWAIAQIEDLAGSIEVLFFP 1076 >gi|86141808|ref|ZP_01060332.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis MED217] gi|85831371|gb|EAQ49827.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis MED217] Length = 1460 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 367/1024 (35%), Positives = 560/1024 (54%), Gaps = 79/1024 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------ 64 FVHL HS +S+L+ S+++++ + PA+ ITD N+ A F + A Sbjct: 261 FVHLHNHSQFSILQSTASVHDLVAAAKKHKMPAVGITDMGNMMGAFHFVKALTAHNKAAQ 320 Query: 65 --------AG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 AG I+PI+G +L++ QD+ TN K+ IV L GY Sbjct: 321 KKNDELLEAGEEPTETIIKPIVGAELNV-CQDH---TN--KSQKDNGYQIVFLAKNKRGY 374 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S Y G V + E E +I+LTG G + + AE+ Sbjct: 375 HNLAKMASLAYT--DGFYYVPRIDRKIVERYKEDIIVLTGNLYGEVPSKVLNVGEKQAEE 432 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228 LL +K+ FGD LY+ + RH D R +Q +++ + H++ LVATNN+ ++ +ED AH Sbjct: 433 ALLWWKETFGDDLYIEVMRHGQEDEDRVNQTLIEFSKKHDVKLVATNNTFYIDKEDAPAH 492 Query: 229 DVLMAVAHS-TVVSQKDRPRV------TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 D+L+ V V + K R R ++Y K+ EM ++F+DLPEA+ N EI + Sbjct: 493 DILLCVKDGEKVATPKGRGRGYRFGLDNEEYYFKSADEMKALFTDLPEAISNVDEIVDKV 552 Query: 282 SFILQVHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYH 333 + +LP F E++ D K EN+ L++ G R + Sbjct: 553 EAFVLARDVLLPAFTIPEEFQFEEDKQDGGKRGENKYLKHITFEGARQRYPE-------I 605 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 D +RL+FEL+VI + GYFLIV DFI+ A+ + VGPGRGS AGS AY L IT Sbjct: 606 TPDIEERLNFELSVIENTGYPGYFLIVEDFIREARNMGVSVGPGRGSAAGSAVAYCLGIT 665 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 +IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV +KYG +VAQIIT+G++ Sbjct: 666 NIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIDKYGANQVAQIITYGTMA 725 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQAIAD-DSRFREARLADPSVDRL 511 AK+++RD R L +P S DR+ KLIPN + Q+ AD +FR L V+ L Sbjct: 726 AKSSIRDTARVLDLPLSDADRIAKLIPNMSKLAKIFGQSEADLKKKFRSEDLV--KVNEL 783 Query: 512 LEISQ-------------KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558 L +++ +LEG R+ HA G++I ++ VP+ SDL VTQF Sbjct: 784 LNLAEGDDLEGQTLRQARQLEGSVRNTGIHACGVIITPDDITNFVPVSIAKDSDLYVTQF 843 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGT 617 + +E+AGL+K DFLGLKTLTL++ ++ + + G+ +D P DD +TY L T Sbjct: 844 DNSVVEEAGLLKMDFLGLKTLTLIKDTVKLVKHKHGIDLDPDSFPLDDQKTYELFQRGDT 903 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +GIFQ ES GM++ ++ ++P ED+IA+ +LYRPGP++ I + RK+G+E+I P Sbjct: 904 VGIFQYESPGMQKHMQALKPTVFEDLIAMNALYRPGPMEYIPSFIARKHGEEEIQYDLPA 963 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ L+ET G+ +YQEQVM ++Q L+G+S +ADVLR+AMGKKI ++K K +F+ G Sbjct: 964 MEEYLEETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKIFALLEKLKPQFLDGGE 1023 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I I++ FA Y FNKSH+ YA I+YQTA+ K HYP E++AA ++ M+ Sbjct: 1024 KNGHDRKILEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYCKAHYPAEYMAAVLSNNMN 1083 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA 856 +++++ F ++ ++ ++++ P VN F V D + + + A+KGVG + I+E Sbjct: 1084 DIKQVTFFMEECKRMGLEVLGPDVNESFRKFTVNDRGAVRFGMGAVKGVGANAVKTIVEN 1143 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908 D P+ S+ D R+D + N++ ESL AG D F R Q + L+ Sbjct: 1144 REDGPYRSVFDLAKRIDLRAANKKAFESLALAGGFDSFMATHRAQYFKDEGDGITFLEKA 1203 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 KY ++N + ++F + + + + E+ V+G Y SGHPL Sbjct: 1204 VKYGAKFQENENSAQVSLFGEASEVQIPEPVVPPCEEWGTMEKLRREKEVVGIYISGHPL 1263 Query: 969 DVYK 972 D +K Sbjct: 1264 DDFK 1267 >gi|149177980|ref|ZP_01856577.1| DNA polymerase III alpha subunit [Planctomyces maris DSM 8797] gi|148843173|gb|EDL57539.1| DNA polymerase III alpha subunit [Planctomyces maris DSM 8797] Length = 1154 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 363/1007 (36%), Positives = 572/1007 (56%), Gaps = 31/1007 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+GA + ++ K+ ++AITD NL+ A++F Q + + PI+G + I + Sbjct: 1 MLDGASRIPEMVSKVKEAGMNSLAITDHGNLYGAMDFYQHCRSQDVNPILGLEAYIAPRS 60 Query: 82 NLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140 + +G + + LL +G++ LI+L S YL +G + E Sbjct: 61 RFE---KGASRMKEASFHLTLLAQNRQGFENLIKLSSASYL--EGFYYKPRIDKEILEAH 115 Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES-- 198 +EGLI+LTG ++G + + AEK ++K+FGDR+Y+ +Q + G + R+ Sbjct: 116 SEGLILLTGCAAGELSHHILGEDWEEAEKLCAWYEKVFGDRVYMEIQ-NAGLEIQRQCLE 174 Query: 199 QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-LKNR 257 V LA LPLVATN++ ++ ++D EA DVL+ V+ VVS + R ++T D + ++ + Sbjct: 175 GTVDLANRMGLPLVATNDAHYVDQKDAEAQDVLLCVSTRAVVSDEKRMKMTGDQFFVRTQ 234 Query: 258 SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317 EM + F L +A+ T E+A R I P F + D++ + LR Sbjct: 235 DEMYNAFPGLEDAVARTQELAERVD-IQMSDKKFYPVF--QPPDNLT--DTQYLRKLCEE 289 Query: 318 GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 L ++ Q + RLD EL VI +M +S YFLIV DF+Q+A+ IP Sbjct: 290 RLPIKYGDEL------TQAHWDRLDLELGVIEQMGYSSYFLIVWDFVQFAENEGIPC-TA 342 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS G++ A+ L ++ + PL++ LLFERFL+P R PD DIDFC+DRR VI Y + K Sbjct: 343 RGSACGAIVAFLLGMSQVCPLKYDLLFERFLDPSRTEPPDIDIDFCRDRRQLVIDYTKQK 402 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497 YG + VAQI TFG+L+AKAA+RDVGRAL +P ++V+ + K+IP + A+ + Sbjct: 403 YGEKSVAQIGTFGTLKAKAAIRDVGRALGVPLARVNEIAKMIPESLGIKLK-DALKESPD 461 Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557 + A D + RLL+++ +LEGL R A THAAG+V+ D PLS++VP+ +TQ Sbjct: 462 LQSAYDQDSEIKRLLDLAMQLEGLCRSAGTHAAGVVVADLPLSEVVPLQSITGKTDIITQ 521 Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKG 616 ++ +E GL+K DFLGL+ LT+L K++ + + RG+ ++ +P DD ET+ LL Sbjct: 522 WDGPTVESVGLLKMDFLGLRNLTILDKAVQNVKKHRGIDINPHKLPLDDQETFELLQRGE 581 Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI 674 T GIFQLES GMR L M+PD EDIIA +LYRPGP++ +V Y + KN + I + Sbjct: 582 TKGIFQLESGGMRDLLTKMKPDKFEDIIATSALYRPGPLEGGMVMQYVDVKNNRIPIPKV 641 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 HP++D +L ET GV++YQEQVM+I + G LS A +A+ KK + + +++++ Sbjct: 642 HPIVDEILDETYGVMVYQEQVMRILNRVGGIELSAAYRCIKAISKKKLKIIADFRDQYLE 701 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 GA K+G+ +A ++FE++ KFA YGFNKSH+ AY ++Y TA++K HYP EF+AA ++ Sbjct: 702 GAKKSGVDVKLATDLFEMIEKFAGYGFNKSHSTAYGGVAYATAYLKAHYPKEFMAALLSC 761 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854 M++ E+I + D R+ I+++PP +N V+F V +I + + AIKGVG ++ Sbjct: 762 GMESHERITEHVDDCRRMKIEVLPPDINRSEVEFSVDGEKIRFGMGAIKGVGEQVLEAVV 821 Query: 855 -EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 E + PF SL + C RVD K LN+ LE+L+ AGAL+ G ++ QL+ +++ + A Sbjct: 822 KEREENGPFTSLYNLCERVDPKTLNKSTLETLIKAGALNSLGGNQAQLMLTVERAVQSAL 881 Query: 914 WVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + ++R +++F E+ ++ +L + + + E+ V GFY + HPL Sbjct: 882 NIHRDRARGQKSLFGDETVDEETGAEEEASLPEAEDWPRAQKLGAEKEVFGFYLTSHPLA 941 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 L K E + LA MV S + T+K S+ G Sbjct: 942 EMGTSLTKYAQNQTNELAEMDDRVEVILAGMVSSIKMAATKKPSKNG 988 >gi|313847630|emb|CBY16618.1| putative DNA polymerase III alpha subunit [Chlamydophila psittaci RD1] Length = 1248 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 375/1078 (34%), Positives = 592/1078 (54%), Gaps = 62/1078 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + + K Q P++A+TD NL+ A+EF ++ I+P Sbjct: 8 TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKP 67 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + K+ ++LL GY+ L L+S + + Sbjct: 68 IIGCEIYVAPSSRFDKKKEKKSRVAN--HLILLCKNELGYRNLC-LLSSLAFTEGFYYFP 124 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L + EGLI L+ SG + +A S + EK L ++ LFG+ Y +Q H Sbjct: 125 RIDRDLLSQ-HAEGLICLSACLSGSVAQAAL-ESEEALEKDLRWYQNLFGEDFYSEIQLH 182 Query: 190 R----------------GYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEA 227 + Y ++ +SQ V+ + + VATN+ ++ +D+ A Sbjct: 183 KMSEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLA 242 Query: 228 HDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 H++L+ V ++ + + K + + ++Y K+ EM +F+D PE + NT+E+ Sbjct: 243 HEILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMAMLFADHPETITNTLEV 302 Query: 278 ARRCSFILQV---HAPI-LPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQ---G 326 A +C+ L + H PI +P F++ + + ++E LR GL + Sbjct: 303 ADKCNLELNLSSKHYPIYVPDFLKDKPNYTEEERYAASSAFLRELCEKGLSTKYTPEKLA 362 Query: 327 AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382 I+K + +D ++RL+ E+++I Y LIV D I WAK N IPVGPGRGSGA Sbjct: 363 HISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGA 422 Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442 GSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + Sbjct: 423 GSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 482 Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502 VAQIITFG+++AK A++DVGR L + S+V+ + K IP + +A+ D E Sbjct: 483 VAQIITFGTMKAKMAVKDVGRTLDVALSKVNHIAKHIPE--LNTTLAKALETDPHLNELY 540 Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMK 561 D ++++++ +LEG R+ HAAG++I GDR L+ +P+ S + TQF+MK Sbjct: 541 TNDAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDR-LTNHIPICISKDSTMITTQFSMK 599 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E G++K DFLGLKTLT + ++ + ++ G ++++ +P DD T+ LL T+GI Sbjct: 600 PVESVGMLKVDFLGLKTLTSIHIAIRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGI 659 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ+ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++ Sbjct: 660 FQMESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMES 719 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M K++ RF A KNG Sbjct: 720 ILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERACKNG 779 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E Sbjct: 780 IDADLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPREWLAALLTSDSDDIE 839 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860 K+ K +A +I I+PP +N DF D I +++ AI+G+G I+E Sbjct: 840 KVGKLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKH 899 Query: 861 -PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 P+ S++DF R D KK+ ++ E+L+ AG D F R +L+++ +K Sbjct: 900 GPYQSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEA 959 Query: 920 TNKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 F+ ITL + + + E+ +LG Y + HP+D K IL Sbjct: 960 ATGVMTFFSLNTMNQKHPITLTPAADVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILP 1019 Query: 977 KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033 ++ + E G IR ++ + + KG R + S+ YE +P Sbjct: 1020 RLSVVSPGEFDNLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVSDGVDSYELPIWP 1077 >gi|255530778|ref|YP_003091150.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366] gi|255343762|gb|ACU03088.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366] Length = 1476 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 367/1042 (35%), Positives = 571/1042 (54%), Gaps = 95/1042 (9%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------- 58 K +FVHL H+ +S+L+ +++ +++ AA + PA+AITD N+ A F Sbjct: 257 KDAAFVHLHNHTQFSVLQSTINIPSLIKATAAHKMPAVAITDHANMMGAFHFVSQVLNHN 316 Query: 59 -------------SQKACAAGIQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVS 104 + A I+PIIGC+ + + ++ K + G +V L Sbjct: 317 KGVEARNAAAIEKGETAEEQTIKPIIGCEFFVCENHEDKKRKDDGY-------QVVFLAK 369 Query: 105 TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164 GY L ++ S Y +G + + E E +++L+G G I Sbjct: 370 NKAGYHNLAKMSSIAYT--RGFYYIPRIDKAIVEQYKEDILVLSGNLYGEISSKLLNMGE 427 Query: 165 QVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEE 223 + AE+ LL +K FGD Y+ L RH D + +V LA HE+ L+ATNN+ +++++ Sbjct: 428 KQAEEALLWWKSQFGDDFYIELMRHNQEDEDIVNATLVNLAKKHEVKLIATNNTYYINKK 487 Query: 224 DYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVE 276 D AHD+L+ V +T + + R ++Y K+ EM S+F+DLPEA+ N E Sbjct: 488 DANAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSPEEMKSLFADLPEAISNIQE 547 Query: 277 IARRCSFILQVHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAI 328 + + +LP+F ++++ +D K EN+ LR+ G + R Sbjct: 548 VVDKIEAYKLAREVLLPKFDIPEEFLVKEDEEDGGKRGENKFLRHLTYVGAKKRY----- 602 Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388 G D +RLDFEL I + + GYFLIV DFI A+ ++ VGPGRGS AGS AY Sbjct: 603 --GEITDDIAERLDFELQTIEKTGYPGYFLIVQDFIAEARNLDVSVGPGRGSAAGSAVAY 660 Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448 L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV KYG +VAQIIT Sbjct: 661 CLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIKKYGSNQVAQIIT 720 Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADP 506 +G++ AK++++D R L +P + +++ KLIPN + L I D+ +EA AD Sbjct: 721 YGTMAAKSSVKDTARVLDLPLFEAEKIAKLIPN-----MKLAKIFTLDEKSLKEALRAD- 774 Query: 507 SVDRLLEI----------------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 +++LE+ +Q LEG R+ HA G++I ++ VP+ Sbjct: 775 EYEKILELKALAGAKDLGAKTLEQAQILEGSLRNTGIHACGVIITPSDITNFVPVATAKD 834 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609 SDL VTQF+ +E AGL+K DFLGLKTLTL++ ++ + R + +D P DD TY Sbjct: 835 SDLYVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKSRHNIDLDPDNFPIDDERTY 894 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T+GIFQ ES+GM++ ++ ++P D+IA+ +LYRPGP++ I + RKNG+E Sbjct: 895 ELFQRGETIGIFQYESTGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEE 954 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +I + LKET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK K+ +DK K Sbjct: 955 EIKYDLDACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMK 1014 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI A++ G I I++ FA Y FNKSH+ YA I+YQTA++K HYP E++A Sbjct: 1015 PKFIKQAAEKGHDAVILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMA 1074 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTT 848 A ++ M +++++ F ++ +Q +Q++ P VN + F V + + L+ IKGVG Sbjct: 1075 AVLSNNMSDIKQVAFFMEECKQMGVQVLGPDVNESDIKFSVNAQGEVRFGLSGIKGVGEK 1134 Query: 849 TARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL------ 901 I+E +K + L DF R +++ +N++ ES V++GA D FGY R Q Sbjct: 1135 AVESIIEDRLEKGMYKDLYDFARRSNTRTVNKKAYESFVYSGAFDAFGYHRAQYFFVGIN 1194 Query: 902 --LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--ENSSV-RFENEQ 956 + ++ + KYA + N ++ ++F G+ +D I V E S + + + E+ Sbjct: 1195 DKMNGIEKVIKYANDFQNNESSSQSSLFG---GSVADLILEPALPVAPEWSLIDKLKYEK 1251 Query: 957 RVLGFYFSGHPLDVYKPILRKM 978 +G + SGHPLD YK L++ Sbjct: 1252 DAIGIFLSGHPLDNYKLELKEF 1273 >gi|327439235|dbj|BAK15600.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046] Length = 1024 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 367/1029 (35%), Positives = 582/1029 (56%), Gaps = 53/1029 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 V+ QV +S LL+ + ++ ++ + + + AI +T L+ L F + AGI P++ Sbjct: 3 VYPQVRTSADLLKSTIRIDELIPFLHHQKAKSCAIVNTK-LYGLLPFWFEMKRAGIHPVV 61 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G + L++T + P +VL T EGY+ L+++ S + + + I Sbjct: 62 GLTI------QLELTEEQSLP------LVLYAKTNEGYRNLLKISSSIAI----RPEQTI 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L WL G M+ +A + Q+AE L F K + D +Y+ + R Sbjct: 106 PLRWLLAYGKGIAFMIPALE----QQAIWLQ--QMAEPVLAEFMKAYPDEVYIGISRLSD 159 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 ES VQLA + LP+VAT+ SLF +EED+ A++V A+ H+ V + Sbjct: 160 TSSL-ESSAVQLAEKNALPIVATHESLFFNEEDFFAYEVAQAI-HTGVKLNDAVQSNKQE 217 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 ++L + F D + L + + C L + +P+F E + EN L Sbjct: 218 NHLLTAEQWQQKFHDQQQWLVQSENLLLSCQIELNTNNVYMPKFPVGEGET----AENLL 273 Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 + + + GL+ RL + Y +R+++EL+VI M +S YFLIVADF+Q+A++ Sbjct: 274 QQQVMTGLQRRLNTNTLPG-----HYVERMNYELHVIQSMGYSDYFLIVADFMQFAREAQ 328 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 I GPGRGS A S+ A+AL IT +DPL++ LLFERFLNP+R+++PD DIDF RR EVI Sbjct: 329 ILTGPGRGSSASSLVAFALEITQVDPLQYDLLFERFLNPERITLPDIDIDFLDTRRHEVI 388 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491 +YV KYG + VAQIITFG+L AKA RDV R ++ + KLIPN P + +A Sbjct: 389 QYVAKKYGKQYVAQIITFGTLSAKAVARDVARMFNFESEALEMISKLIPNKPGITLK-EA 447 Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 A R A+P + + S +LEGL R+ASTHAAG+V+ PL +VP+ + Sbjct: 448 YAMSENLRAWITAEPIRQKWFQTSLRLEGLPRNASTHAAGVVLSPVPLVDVVPI-EEGHD 506 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDLSLIPFDDHET 608 + +TQ+ M+ +E+ GL+K DFLGL+ LT+L+ KS+ F R +++ + IP +D +T Sbjct: 507 GIFLTQWPMQEVEQNGLLKIDFLGLRNLTILEQIRKSIQFTHNR--QINFNHIPLNDEKT 564 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + LL T GIFQLES GM+ AL ++P DI+A+ +LYRPGP++ I +Y RK+ K Sbjct: 565 FELLQNGDTNGIFQLESDGMKNALREIKPTHFLDIVAVNALYRPGPMEFIPMYARRKHKK 624 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E+++ HP + P+L+ET GVIIYQEQ+M+IA +++G+S +AD+LRRA+ KK ++ +++Q Sbjct: 625 EQVIMPHPHLTPILEETYGVIIYQEQIMRIANVMAGFSFGQADLLRRAVSKKKRDVLEQQ 684 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + F+ GA G ++ A ++ L+ +FADYGF KSHA AY+VISYQ A++K +YPV F Sbjct: 685 RASFVKGALTKGYTQQAAEEVYALIVRFADYGFPKSHAVAYSVISYQMAYLKANYPVNFY 744 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 AA +T N +K+ + +A+ I+I+PPS+N FKV +I +SL+AI+GV Sbjct: 745 AALLTNATGNPDKLAQILMEAKAKGIEILPPSINRSMRHFKVESGKIRFSLSAIRGVPQP 804 Query: 849 TARHIMEASAD--KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + ++ A + KPFDS+ D + + NR+++E L+ AGALD FG R LL +++ Sbjct: 805 FMQKLLLAREERQKPFDSIFDLAVTLTTANFNRKIIEPLIKAGALDEFGKDRATLLATIE 864 Query: 907 NIQKYAQWVEKNRTNKHEN-IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 QK A +V + E + A K +S+ + + ++ + E+ VLGFY S Sbjct: 865 GAQKQADFVRPGGDDLFEGALLAFGKPKYSETSPIPE------KIKLQYEKDVLGFYLSD 918 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HP+ + + + +++A ++ N +++ V +Q +T++G + +V + Sbjct: 919 HPIVKLRSQFPE--VTATVQTLAQLKDNAFVKIIGQVREMRQLRTKRGELMAFVQMEDEY 976 Query: 1025 KEYEANFFP 1033 FP Sbjct: 977 GTVSLTLFP 985 >gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC 33624] gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC 33624] Length = 1484 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 375/1083 (34%), Positives = 577/1083 (53%), Gaps = 89/1083 (8%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 L +S F HL HS +S+L+ S++++++ A +Q PA+A+TD N+ A F+++ Sbjct: 250 LLQSAPFAHLHNHSQHSVLQSTASISDLVNAAAKEQMPAVALTDHGNMMGAFHFTKEVAK 309 Query: 65 AG---------------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103 ++PIIGC+ + +++L T + IVLL Sbjct: 310 YNKEAKAKNARAQEEGNAPTHTLLKPIIGCEFYV-CENHLDKTKKDNGY-----QIVLLA 363 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 EGYQ LI++ S Y +G V RI +Q + +I L+G G I Sbjct: 364 KNKEGYQNLIKMASIAYT--EGFYYVPRIDKEIVQRYKDQ-VIALSGNLQGEIPSKILNQ 420 Query: 163 SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLS 221 ++ AE+ LL +K+LF D Y+ L RH D R + V ++LA H + LVATNN+ +++ Sbjct: 421 GNRQAEEALLWWKELFQDDFYIELMRHGQEDENRANTVLIELAKKHAIKLVATNNTYYIN 480 Query: 222 EEDYEAHDVLMAVA----HSTVVSQKDRPR---VTPDHYLKNRSEMVSIFSDLPEALENT 274 +D AHD+L+ V +T + Q R ++Y K+ +M +F D+PEA+ + Sbjct: 481 PKDANAHDILLCVKDGEKQATSIGQGRGFRNGLPNEEYYFKSSEQMKELFKDIPEAILSI 540 Query: 275 VEIARRCSFILQVHAPILPRF-----IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAI 328 EI + + +LP+F + E D K+ EN+ LR+ G E R + Sbjct: 541 QEIIDKITPYELARDILLPKFSIPKEFQVEDDPTGKKGENKYLRHLTYIGAEKRYKE--- 597 Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388 + R+R+DFEL++I + + GYFLIV DFI A+ + VGPGRGS AGS AY Sbjct: 598 ----LTDEIRERIDFELSIIEKTGYPGYFLIVEDFITAARNMGVSVGPGRGSAAGSAVAY 653 Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448 L IT+IDP+ + LLFERFLNPDR+SMPD DIDF D R V+ YV KYG +VAQI T Sbjct: 654 CLGITNIDPIAYDLLFERFLNPDRVSMPDIDIDFEDDGRGRVLDYVIGKYGANQVAQIST 713 Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD--DSRFREARLAD- 505 +G++ AK+++RD R L +P D++ KL+PN +SL+ I D +E +D Sbjct: 714 YGTMAAKSSIRDTARVLDLPLKDADQIAKLVPN-----ISLKKIFSLPDEELKEKVGSDF 768 Query: 506 PSVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 P V L +I+Q LEG R+ HA G++I ++ VP+ SD Sbjct: 769 PKVTELKKIAQGHDLAAKTVQQACILEGSVRNTGIHACGVIITPDDITNFVPVMLAKDSD 828 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611 L VTQF+ +E AGL+K DFLGLKTLT+L+ ++ + +R + +D+ IP DD TY L Sbjct: 829 LFVTQFDNSVVESAGLLKMDFLGLKTLTILKDAVSLIQKRHNITLDIEEIPLDDVPTYEL 888 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 T+GIFQ ES GM++ + ++P D+IA+ +LYRPGP+D I + +RK+GKE I Sbjct: 889 FQRGETIGIFQYESPGMQKHMRELKPTVFGDLIAMNALYRPGPMDYIPSFIHRKHGKEPI 948 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 ++ LK+T G+ +YQEQVM ++Q L+G++ EAD LR+AMGKK+K+ + + K + Sbjct: 949 TYDLADMEEYLKDTYGITVYQEQVMLLSQKLAGFTKGEADKLRKAMGKKLKDVLAEMKPK 1008 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 FI G K G I++ FA Y FNKSH+ YA I+YQTA++K +YP EF+AA Sbjct: 1009 FIEGGGKKGHPAETLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMAAV 1068 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTA 850 ++ M++++ I F + + I+++ P VN F V + I + + A+KG+G Sbjct: 1069 LSNNMNDIKSISFFLSECHRMGIKVLSPDVNESEYKFTVNKEGAIRFGMGAVKGLGKAAV 1128 Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS----- 904 I+E P+ S+ D R+D K N++ ESLV AG D F R Q Sbjct: 1129 DTIVETRKSGPYKSVFDMVKRIDLKSANKKAFESLVLAGGFDSFPEVHRAQFFHQEPSEN 1188 Query: 905 ---LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 L+ I +Y +++ + ++F T + + K + + E+ V+G Sbjct: 1189 MVFLEKILRYGAKAQESAKSIQLSLFGDSPETQFPEPKMPKTEEWSPMEKLHREKEVVGI 1248 Query: 962 YFSGHPLDVYKPILRKMGIK---GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 Y SGHPLD++ L+ + K E + +R ++ + K ++ G GW Sbjct: 1249 YISGHPLDIFHYQLKYLCNKEVIELAEGIERFENQEVRFGGIITKIEHKTSKTGK--GWG 1306 Query: 1019 TFS 1021 F+ Sbjct: 1307 LFT 1309 >gi|15618576|ref|NP_224862.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae CWL029] gi|15836198|ref|NP_300722.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae J138] gi|16752374|ref|NP_444633.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae AR39] gi|33242023|ref|NP_876964.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae TW-183] gi|14194705|sp|Q9Z7N8|DPO3A_CHLPN RecName: Full=DNA polymerase III subunit alpha gi|4376966|gb|AAD18805.1| DNA Polymerase III Alpha [Chlamydophila pneumoniae CWL029] gi|7189016|gb|AAF37967.1| DNA polymerase III, alpha subunit [Chlamydophila pneumoniae AR39] gi|8979038|dbj|BAA98873.1| DNA polymerase III alpha [Chlamydophila pneumoniae J138] gi|33236533|gb|AAP98621.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila pneumoniae TW-183] Length = 1240 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 370/1083 (34%), Positives = 590/1083 (54%), Gaps = 72/1083 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQ---PAIAITDTNNLFSALEFSQKACAAG 66 +++ L HS YS+L+ ++++I D +A Q+ PA+A+TD NL+ A++F ++ G Sbjct: 2 TWIPLHCHSQYSVLD---AMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKG 58 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IQPIIGC+ I + ++ ++LL +GY+ L L S + + Sbjct: 59 IQPIIGCECYIAPGSRFDKKKEKRSR--AAHHLILLCKNEQGYRNLCILTS-LAFTEGFY 115 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 RI L++ +EGLI L+G S + A S + L F+ LF D + + Sbjct: 116 YFPRIDKDLLRQY-SEGLICLSGCLSSSVSDAAL-KSPEALLLELQWFQDLFKDDYFTEV 173 Query: 187 QRHRGYDR----YRESQVVQLAYTH------------------ELPLVATNNSLFLSEED 224 Q H+ + ++E + Q Y+ +P VATN+ +++ D Sbjct: 174 QLHKMSEESIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINAND 233 Query: 225 YEAHDVLMAVAHSTVVSQKDRPRVTP----------DHYLKNRSEMVSIFSDLPEALENT 274 ++AH++L+ V V + P ++Y K+ ++M +F D+PE + NT Sbjct: 234 WQAHEILLNVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNT 293 Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 +E+A+RC F P ++ + + E + R +A A +LA+ A+ K Y + Sbjct: 294 LEVAKRCDFTFDFSKKHYPIYVPESLKTLNSYTEED-RYQASAVFLKQLAEEALPKKYSS 352 Query: 335 QDY----------------RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378 + ++R+D E+ +I Y LIV D I WAK N IPVGPGR Sbjct: 353 EVLAHIAKKFPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGR 412 Query: 379 GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438 GSGAGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++ Sbjct: 413 GSGAGSVLLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERH 472 Query: 439 GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498 G + VAQIITFG+++AK A++DVGR L M S+V+ + K IP+ + +A+ D Sbjct: 473 GKDNVAQIITFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIPD--LNTTLSKALETDPDL 530 Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558 + + D ++++++ LEG R+ HAAG++I L+ +P+ S + TQ+ Sbjct: 531 HQLYINDAESAQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQY 590 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGT 617 +MK +E G++K D LGLKTLT + ++ + ++ G + ++ +P DD T+ LL T Sbjct: 591 SMKPVESVGMLKVDLLGLKTLTSINIAMSAIEKKTGQSLAMATLPLDDATTFSLLHQGKT 650 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +GIFQ+ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL Sbjct: 651 MGIFQMESKGMQELAKNLRPDLFEEIIAMGALYRPGPMDMIPSFINRKHGKEIIEYDHPL 710 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M++++E+F A Sbjct: 711 MESILKETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRAC 770 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 NGI +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D Sbjct: 771 NNGIDPELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSD 830 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA- 856 ++EKI K ++A+ I I+PP +N F D I +++ AIKG+G I+E Sbjct: 831 DIEKIGKLIREAQSMGIPILPPHINVSSNHFVATDEGIRFAMGAIKGIGRGLIESIVEER 890 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 P++S+ DF R D KK++++ +ESL+ AG DCF +R LL S++ + + + Sbjct: 891 DHHGPYESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAIAKDK 950 Query: 917 KNRTNKHENIFAHEKGTFSDK----ITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVY 971 K + F G K I L K + + E+ +LG Y + HP+D Sbjct: 951 KEAASGVMTFFT--LGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTV 1008 Query: 972 KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAKEYEAN 1030 + L ++ + E G+ +R ++ K + K + + S+ YE Sbjct: 1009 RDHLSRLSVVLAGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYELP 1068 Query: 1031 FFP 1033 +P Sbjct: 1069 IWP 1071 >gi|288916170|ref|ZP_06410550.1| DNA polymerase III, alpha subunit [Frankia sp. EUN1f] gi|288352361|gb|EFC86558.1| DNA polymerase III, alpha subunit [Frankia sp. EUN1f] Length = 1178 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 375/1072 (34%), Positives = 585/1072 (54%), Gaps = 66/1072 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA L ++ +++ PA+AITD ++ A +F ++A AAG++P Sbjct: 4 SFVHLHVHTEYSMLDGAARLKDMFSEVSRQGMPAVAITDHGYMYGAYDFYRQATAAGVKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS-----------IVLLVSTAEGYQRLIELVSR 118 IIGC+ + + L + + + P S + + G L L SR Sbjct: 64 IIGCEAYVAPESRL-LKQRVRWGDPNQKSDDVSGGGSYTHMTMWARNETGLHNLFRLNSR 122 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 + + R+ + E EGL+ TG SG + A K ++++F Sbjct: 123 ASIEGHYIKWPRMDSEIIAE-HAEGLMATTGCPSGEVQTRLRLGHYDEALKAAAKYQEIF 181 Query: 179 G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G + + + H +R ++ +A ++ V TN+S + E + H L+ V Sbjct: 182 GRENFFCEIMDHGIEIERRVRDGLIDIARALDMRFVVTNDSHYTYESERATHSALLCVQT 241 Query: 237 STVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFI-LQVHAPILP 293 ++ ++ +YLK+ +M +I + + E T+ IA R + ++P Sbjct: 242 ASTIANPTFQFEGSGYYLKSAEQMYAIDTSDAWQQGCETTLMIAERVEPAGMFTKRNLMP 301 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 RF + + EE+ R + AG++ R G +++R R+++EL VI M F Sbjct: 302 RFPVPDGE----TEESWFRKETWAGMDRRFPDG------FDEEHRTRVEYELGVILSMGF 351 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFL+VADFI WAK IPVGPGRGS AGS+ A+AL ITD+DP+ SLLFERFLNPDR+ Sbjct: 352 PSYFLVVADFIMWAKNQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNPDRV 411 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD DIDF + RR +VIRYV +K+G +R+AQI+T+G+++AKAA++D R L PY+ D Sbjct: 412 SMPDIDIDFDERRRGDVIRYVTDKWGEDRIAQIVTYGTIKAKAAIKDSSRVLGYPYAVGD 471 Query: 474 RLCKLIPNDPA---HPVSLQAIAD--DSRFREAR------LADPSVDRLLEISQKLEGLY 522 R+ K +P PA + L I D +R+ EA +D V ++++ ++ LEGL Sbjct: 472 RITKAMP--PAVMGKDIPLSGIFDPKHARYSEAGEIRSLYESDADVRKVIDTAKGLEGLI 529 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R A HAAG+++ P+ +P++R +TQF+ E GL+K DFLGL+ LT++ Sbjct: 530 RQAGVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCETLGLLKMDFLGLRNLTVM 589 Query: 583 QKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + + RG+KVDL + +D +Y LL TLG+FQL+ MR L M+PD E Sbjct: 590 DDAVRNVESNRGLKVDLMGLELNDPPSYELLARGDTLGVFQLDGGPMRSLLRMMRPDNFE 649 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695 DI A+++LYRPGP+ ++ + Y RKNG+++I IHP L +P+ L T G+I+YQEQV Sbjct: 650 DISAVLALYRPGPMGANSHINYALRKNGQQEITPIHPQLAEPLADILDTTYGLIVYQEQV 709 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++GY+L +AD+LRRAMGKK KE +DK+ F G NG S ++++L Sbjct: 710 MAIAQRVAGYTLGQADLLRRAMGKKKKEILDKEFVPFSDGMKANGFSAEAIKMLWDILVP 769 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 F+DY FNK+H A Y ++SY TA++K ++P E++AA +T D+ +K + + R+ I+ Sbjct: 770 FSDYAFNKAHTAGYGLVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAIYLNECRRMGIR 829 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873 ++PP VNT D+ GDN I LAAI+ VG I+ A F S DF +VD Sbjct: 830 VLPPDVNTSDADYTAHGDNEIRVGLAAIRNVGVNVVESIVRNRKAKTRFASFPDFLDKVD 889 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KG 932 + N+R +ESL+ AGA D G++R L + + V+K ++FA + +G Sbjct: 890 AVVCNKRTVESLIKAGAFDSLGHTRRGLAEKHEQAVDAVMGVKKKNAEGQFDLFAFDGEG 949 Query: 933 TFSDK---ITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 D +++FS + + S+ E+ +LG Y S HPL + IL + S+ Sbjct: 950 GEEDAAPIFGVQEFSDQEWDKSLLLSLEREMLGLYVSDHPLLGVEHILAAKA----DCSI 1005 Query: 988 ATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A + G + + ++ Q+K T++G T + E FFP Sbjct: 1006 AALNGGEYPDGSVVTIGGIISGLQRKVTKQGKLWALATVEDMGGGLEVMFFP 1057 >gi|302388689|ref|YP_003824510.1| DNA polymerase III, alpha subunit [Thermosediminibacter oceani DSM 16646] gi|302199317|gb|ADL06887.1| DNA polymerase III, alpha subunit [Thermosediminibacter oceani DSM 16646] Length = 1061 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 369/1050 (35%), Positives = 579/1050 (55%), Gaps = 70/1050 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VHS YSLL+G L ++ K A PA+A+TD L+ + F + AGI+P Sbjct: 2 AFCHLHVHSEYSLLDGLCRLPLLVKKAAELAMPALALTDHGGLYGMVPFYRLCLEAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + ++D GK F +VLL EG++ L+ LV+R ++ D Sbjct: 62 ILGCEVYV-VED--VTCRWGKESFH---HLVLLSENQEGFKNLLSLVTRSHV-DGFYYRP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L +GLI L+G G + + AE+ + +FG D ++ LQ Sbjct: 115 RVDKKLLAS-HAKGLIALSGCIRGQVADLILRGDVKAAEEAAKEYADIFGRDNFFLELQY 173 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + +A + LVATN+ +L D H VL+AV + + + Sbjct: 174 HGLAAEKKANFWMRSIAERLGIGLVATNDVHYLQPSDAGTHRVLLAVQTLSALGEAAS-- 231 Query: 248 VTP--DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 P HYLK+ +EM ++F ++P ALENTV IA RC L + LP E Sbjct: 232 -LPGNQHYLKSPAEMEALFREIPGALENTVAIAERCDVRLPLGGTKLPEIALPE----GV 286 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 ++ LR G R + Q+ + RL++EL+VI + ++GYFLIV D + Sbjct: 287 SADDYLRKLCFQGAAARYGRPL------PQEVKDRLNYELSVIKKTGYAGYFLIVKDIVD 340 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+K I VG GRGS AGS+ AY L ITD+DPL++ L+FERFLNP+R+S PD DID C Sbjct: 341 FARKRGIIVGAGRGSAAGSLAAYVLGITDVDPLKYGLIFERFLNPERISPPDIDIDLCHL 400 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 R EV+ Y+++++G ER+A + F +LQA+AALRD GRAL + Y ++D C IP +H Sbjct: 401 GRREVLEYIRHRFGRERIAHVGAFSTLQARAALRDTGRALGLAYEKIDAACSRIPY--SH 458 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 A+ + D V R I++KL+GL RH + H+AG+ I DRPL++ VP+ Sbjct: 459 INLEDALKESPHLSSLVKNDAGVRRAFAIARKLQGLPRHMTQHSAGVAIADRPLTEYVPL 518 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 R ++ +TQ +M +E+ GL+K D LGL+ LT++ ++L + R G+ + IP D Sbjct: 519 QRASGEEI-ITQADMYALEELGLVKIDLLGLRFLTVIGETLKLVRDRYGIDMKPEEIPLD 577 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662 D +TY +L T G FQLES GMR+ L ++P IED+ A+++LYRPGP+ + + + Sbjct: 578 DEKTYMVLARGDTGGCFQLESGGMRKMLRRIKPKNIEDLSAVLALYRPGPLKSGMAEEFI 637 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 R+ G + + IHP ++P+L++T GV +YQEQ+MQ A L+SGY+ EAD+LRRA+ KK K Sbjct: 638 ARRQGIKPVSYIHPALEPVLRDTYGVFVYQEQLMQAACLISGYTPGEADLLRRAIAKKKK 697 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +E++++K RF+ A + GI + A +F L F DYGFNKSH+ +YAV++Y+T +++ H Sbjct: 698 DEIEREKPRFLKRAVERGIDEKTAGELFATLEAFGDYGFNKSHSISYAVMAYRTVYLREH 757 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF--KVGDNR--IYYS 838 +P+E+ A+ L MD +++ + +AR+ I+++ P +N F + G ++ I Sbjct: 758 FPLEYFASLFNLYMDTPSRLQLYLCEARRREIRLLLPDINMSGAGFVPEGGPHQRAIRAG 817 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 LA IK +G I++A D PF DFC RVD + +N R LESLVF+GA D FG R Sbjct: 818 LALIKNLGPRGMEEILQAREDCPFTGFFDFCRRVDRRVINARALESLVFSGAFDSFGIPR 877 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L+ SL +W+ + + +N ++ +E + + S F Q++ Sbjct: 878 PALIISL-------KWMLSGCSGRPQNQLC----LLNENPDVEALAADLSVADFTPSQKM 926 Query: 959 ------LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN---------IRLAAMVVS 1003 +G+Y + HP++ IKG E T ++ +R++ +++ Sbjct: 927 AQEMMSMGYYITAHPMEF---------IKGRPEETCTHTASDVEEIGEKQRVRISGILLD 977 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +TR G R+ + + E FP Sbjct: 978 LRSGRTRSGERMLFARLEDLTGSVELVIFP 1007 >gi|313204257|ref|YP_004042914.1| DNA polymerase iii, alpha subunit [Paludibacter propionicigenes WB4] gi|312443573|gb|ADQ79929.1| DNA polymerase III, alpha subunit [Paludibacter propionicigenes WB4] Length = 1265 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 392/1131 (34%), Positives = 621/1131 (54%), Gaps = 119/1131 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58 SFVHL VHS YS+L+G +++ ++DK + A+A+TD N+F EF Sbjct: 3 SFVHLHVHSHYSVLDGMSTISGLVDKASKSGMHAVALTDHGNMFGVKEFFNYAKKKNGKV 62 Query: 59 -------SQKACAAGI--------------------QPIIGCQLDIDMQDNL-KMTNQGK 90 ++ A G+ +PIIGC+ + + L K + + Sbjct: 63 KGQIADLQKQLKAEGLTEEEKTSILEQIEEAKHKIFKPIIGCEAYVARRGRLSKEGTEDR 122 Query: 91 TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG 150 + + +VLL +GYQ L +LVS M ++ RI L++ +EGLI + Sbjct: 123 SGY----HLVLLAKNKKGYQNLCKLVS-MSWIEGMYYRPRIDHDILEKY-SEGLIASSAC 176 Query: 151 SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG---------YDRY--RESQ 199 G I + + AEK ++ +KK+FGD Y+ LQRH+ +D+ + + Sbjct: 177 LGGEIHKKVESGNMDEAEKSVMWYKKVFGDDFYIELQRHKTDKPNADYSTFDKQMRQNEE 236 Query: 200 VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259 +++LA +VATN+ F+ EE EAH+ L+ ++ + +R R T +LK+ + Sbjct: 237 LIKLARKTNTKIVATNDVHFVEEEHGEAHERLICLSTGKDLDDPNRMRYTKQEWLKSPEQ 296 Query: 260 MVSIFSDLPEALENTVEIARRCSFI---LQVHAPILP---------RFIEKECDDIQKEE 307 M IF+D+PEAL NT+EIA + F P+ P ++ K +++ + E Sbjct: 297 MWQIFADIPEALNNTLEIAEKVEFFDIDSNAMMPVFPIPESFGTEEQYRAKFSEEMLRSE 356 Query: 308 -----------ENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKF 353 E +R K A +LA A Y ++ D ++R+DFEL V+ M F Sbjct: 357 FGEGFDRLGGYEKAVRVKLEADYLTKLAYEGAAVRYGSELTADQKERIDFELEVMKTMGF 416 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIV DFI+ A+ + VGPGRGS AGSV AY L ITDIDPL++ LLFERFLNPDR+ Sbjct: 417 PGYFLIVQDFIRAARDMKVSVGPGRGSAAGSVVAYCLRITDIDPLKYDLLFERFLNPDRI 476 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD DIDF D R +V+R+V KYG ERVA IIT+G++ K++++DV R ++P S+ D Sbjct: 477 SMPDIDIDFDDDGRGQVLRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLSEAD 536 Query: 474 RLCKLIPND---------PAHPVS--LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 RL KLIP+ P +S L+ + + R + +D ++ L ++ LEG Sbjct: 537 RLTKLIPDKFPEGADGKAPKITISNCLKYVPEMQTARNS--SDLNLANTLRYAEMLEGTV 594 Query: 523 RHASTHAAGIVIGDRPLSQLVP----MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 R HA G++IG L+ LVP M ++ ++ VTQ+ IE+ GLIK DFLGLKT Sbjct: 595 RQTGVHACGVIIGADDLTNLVPLSTAMDKETNEEMLVTQYEGSVIEEIGLIKMDFLGLKT 654 Query: 579 LTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 L++++++L + + +G+ +D+ IP DD +TY L + T+G FQ ES+GM++ L +QP Sbjct: 655 LSIIKEALSNIKKSKGIDLDIDSIPIDDCKTYELFSKGLTVGTFQFESAGMQKHLINLQP 714 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 ED+IA+ +LYRPGP+ I + NRK+G+EKI P+++ LK+T G+ +YQEQVM Sbjct: 715 TQFEDLIAMNALYRPGPMQYIPQFVNRKHGREKIEYPFPIMENRLKDTYGITVYQEQVML 774 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS-KTIAVNIFELLAKF 756 +++ L+G++ ++D LR+AMGKK+ ++M+ K +F+ G KNG K I+ A+F Sbjct: 775 LSRDLAGFTRGQSDELRKAMGKKLIDKMEALKVKFMDGCEKNGFGPKAKLEQIWSDWAEF 834 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A Y FNKSHA Y+ I+YQTA++K HYP EF+AA++T D++ ++ KF + + + + Sbjct: 835 AKYAFNKSHATCYSWIAYQTAYLKAHYPAEFMAANLTRNKDDITEVGKFMDECKNLGMNV 894 Query: 817 MPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDS 874 + P VN + F V D + + L AIKGVG I+ E +A+ + S+ + RV+ Sbjct: 895 LGPDVNESDLTFTVNADGNVRFGLGAIKGVGEGAVEAIVNERNANGKYTSMFNLIERVNL 954 Query: 875 KKLNRRVLESLVFAGALDCFG-YSRMQLL-------QSLDNIQKYAQWVEKNRTNKHENI 926 N+R +ESL +GA D F R QL Q L++I +Y + + ++ Sbjct: 955 TACNKRAMESLALSGAFDSFSDVHREQLFVENSKGEQVLESILRYGNKYQTDLAMTKNSL 1014 Query: 927 FAHEKGTFSDKITLEK--FSVENSSVRFENEQR-VLGFYFSGHPLDVYKPILRKM--GIK 981 F G S +IT + ++ E S + N++R ++G Y S HPLD Y+ + + Sbjct: 1015 FG---GLDSVEITKPEIPYAPEWSPLEKLNKERDLIGMYLSAHPLDEYEFEINHICNATT 1071 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +++++G +++ MV + + ++ G+ G T + A +E F Sbjct: 1072 VDLKDLSSLQGKGLKIGGMVTNFRHGTSKAGNPYGIFTLEDYAGAFEFALF 1122 >gi|329942392|ref|ZP_08291202.1| DNA polymerase III, alpha subunit [Chlamydophila psittaci Cal10] gi|325506690|gb|ADZ18328.1| DNA polymerase III subunit alpha [Chlamydophila psittaci 6BC] gi|328815302|gb|EGF85290.1| DNA polymerase III, alpha subunit [Chlamydophila psittaci Cal10] gi|328914265|gb|AEB55098.1| DNA polymerase III, alpha subunit, form 1 [Chlamydophila psittaci 6BC] Length = 1242 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 375/1078 (34%), Positives = 592/1078 (54%), Gaps = 62/1078 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + + K Q P++A+TD NL+ A+EF ++ I+P Sbjct: 2 TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + K+ ++LL GY+ L L+S + + Sbjct: 62 IIGCEIYVAPSSRFDKKKEKKSRVAN--HLILLCKNELGYRNLC-LLSSLAFTEGFYYFP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L + EGLI L+ SG + +A S + EK L ++ LFG+ Y +Q H Sbjct: 119 RIDRDLLSQ-HAEGLICLSACLSGSVAQAAL-ESEEALEKDLRWYQNLFGEDFYSEIQLH 176 Query: 190 R----------------GYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEA 227 + Y ++ +SQ V+ + + VATN+ ++ +D+ A Sbjct: 177 KMSEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLA 236 Query: 228 HDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 H++L+ V ++ + + K + + ++Y K+ EM +F+D PE + NT+E+ Sbjct: 237 HEILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMAMLFADHPETITNTLEV 296 Query: 278 ARRCSFILQV---HAPI-LPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQ---G 326 A +C+ L + H PI +P F++ + + ++E LR GL + Sbjct: 297 ADKCNLELNLSSKHYPIYVPDFLKDKPNYTEEERYAASSAFLRELCEKGLSTKYTPEKLA 356 Query: 327 AIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382 I+K + +D ++RL+ E+++I Y LIV D I WAK N IPVGPGRGSGA Sbjct: 357 HISKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGA 416 Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442 GSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + Sbjct: 417 GSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDN 476 Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502 VAQIITFG+++AK A++DVGR L + S+V+ + K IP + +A+ D E Sbjct: 477 VAQIITFGTMKAKMAVKDVGRTLDVALSKVNHIAKHIPE--LNTTLAKALETDPHLNELY 534 Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMK 561 D ++++++ +LEG R+ HAAG++I GDR L+ +P+ S + TQF+MK Sbjct: 535 TNDAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDR-LTNHIPICISKDSTMITTQFSMK 593 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E G++K DFLGLKTLT + ++ + ++ G ++++ +P DD T+ LL T+GI Sbjct: 594 PVESVGMLKVDFLGLKTLTSIHIAIRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGI 653 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ+ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++ Sbjct: 654 FQMESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMES 713 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M K++ RF A KNG Sbjct: 714 ILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERACKNG 773 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 I +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++E Sbjct: 774 IDADLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPREWLAALLTSDSDDIE 833 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860 K+ K +A +I I+PP +N DF D I +++ AI+G+G I+E Sbjct: 834 KVGKLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKH 893 Query: 861 -PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 P+ S++DF R D KK+ ++ E+L+ AG D F R +L+++ +K Sbjct: 894 GPYQSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEA 953 Query: 920 TNKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 F+ ITL + + + E+ +LG Y + HP+D K IL Sbjct: 954 ATGVMTFFSLNTMNQKHPITLTPAADVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILP 1013 Query: 977 KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033 ++ + E G IR ++ + + KG R + S+ YE +P Sbjct: 1014 RLSVVSPGEFDNLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVSDGVDSYELPIWP 1071 >gi|320102869|ref|YP_004178460.1| DNA polymerase III subunit alpha [Isosphaera pallida ATCC 43644] gi|319750151|gb|ADV61911.1| DNA polymerase III, alpha subunit [Isosphaera pallida ATCC 43644] Length = 1243 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 384/1095 (35%), Positives = 592/1095 (54%), Gaps = 87/1095 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS YSLL+GA + +++ + + A+A+TD NL +A+EF +++ AA QPI Sbjct: 14 FVHLHCHSHYSLLDGASKIPDLIARAKSLGMNALAVTDHGNLHAAMEFLRESKAADFQPI 73 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + G T + LL AEG++ L+ L S+ +L +G Sbjct: 74 IGLEAYVAPGHRASKIPGGCNGQETSFHLTLLARDAEGFRNLMRLSSKAFL--EGFYYKP 131 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + E ++GLI L+G +S + + AE+ + K+FG + ++ +Q + Sbjct: 132 RIDKEILERHSKGLICLSGCASSEFSDFLLHDRFEEAERLAAWYLKVFGPENFFIEIQNN 191 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E + + LA LPLVAT+++ +L+ ED AHDVL+ + + R R Sbjct: 192 GVAIQKECEEKSIDLARRMGLPLVATSDAHYLTREDAPAHDVLLCINTGKTFNDPTRMRF 251 Query: 249 TPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFI-LQVHAPILPRFIEKECDDIQKE 306 D + +++ EM +AL+ + +IA R + L + P F + Sbjct: 252 ETDEFFIRSPEEMYRAMPGHEDALKRSADIAARIDYSGLDLGTRRFPVFKPP----TGQT 307 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E LR GL R + +RL+ EL +I RM F+ YFLIV DF+++ Sbjct: 308 PEEYLRALCQRGLVERYGNNP------PPEATRRLEHELEIILRMGFASYFLIVWDFVRF 361 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++ IP RGS G++ +Y L ++ +DPL + LLFERFL+P+R PD DID CQ+R Sbjct: 362 ARERGIP-NSARGSACGALVSYVLHLSHVDPLTYDLLFERFLDPNRSEAPDIDIDLCQER 420 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV+NKYG E VAQI TFG+L A+A LRDVGR L +P S+VD++ KL+P Sbjct: 421 RYEVIEYVRNKYGVENVAQIGTFGTLAARAVLRDVGRVLGIPLSKVDQVAKLVPQ--VLN 478 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +SL QAI + R DP V R+L+ ++LEGL R+ THAAG+VI DRPL +LVP+ Sbjct: 479 ISLDQAIKQEPELRRLGELDPEVGRMLDYGRRLEGLVRNVGTHAAGVVIADRPLIELVPL 538 Query: 546 Y----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 +D ++ TQ++M +EKAGL+K DFLGL+ LT+L +++ + R ++D + Sbjct: 539 QKLPNKDKEKEVVTTQWDMGDVEKAGLLKMDFLGLRNLTILDRAVRLIRARHPRLDFRIE 598 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P DD +T+ LL T G+FQLES+G+R L M+PD DIIA +LYRPGP++ + Sbjct: 599 NLPLDDPDTFALLQKGETKGVFQLESAGIRDLLIKMKPDVFNDIIATNALYRPGPLNGGM 658 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V Y + K+G+++ HP++ +L+ET GV++YQEQVM+I L G LS A +A+ Sbjct: 659 VDDYIDCKHGRKQPNYPHPVMREILEETHGVMVYQEQVMRILNRLGGIELSAAYQCIKAI 718 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK E + K K +F++GA + G++K A IF+L+ F YGFNKSH+ AYA+++YQTA Sbjct: 719 SKKKTEVIAKNKAQFVAGAVERGLAKEKAEEIFDLIEYFGGYGFNKSHSTAYALVAYQTA 778 Query: 778 WMKTHYPVEFLAASMTLEMDNVE--KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NR 834 ++K H+P E++AA ++ E+D E K+ + +D R+ I+++PP +N+ +F V D + Sbjct: 779 YLKAHFPTEYMAALLSSEIDGAERDKLVEHIEDCRRMGIEVLPPDINSGEAEFAVVDQGK 838 Query: 835 IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I +SLAAIKGVG I++ ++ PF + DF RV S+ + +E L+ AGA D Sbjct: 839 IAFSLAAIKGVGIKAVEAIVKERNERGPFAHIGDFLERVPSQVVTSSTVEILIKAGAFDH 898 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------------------------- 927 G +R QLL +L + + AQ +++R N+F Sbjct: 899 LGGNRAQLLAALPRLVQAAQTAQEDRKRGQRNLFDAIADDPPKPFRGKTAKVDANGHPHA 958 Query: 928 ---AHEKGTFSDKITLEKFSVEN----------------------SSVRFENEQRVLGFY 962 AH +G S + S++ E++VLGFY Sbjct: 959 NGSAHVQGNGSRHANGSAVAAATDSHGRSEEIAALLNLPNLPELADSLKLAEEKKVLGFY 1018 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK---KTRKG-SRIGWV 1018 S HPL + ++R + ++ I L M+ S Q K K+R G +R+ + Sbjct: 1019 MSSHPLTRHAAMIRALASHSIDQLADVPEKTEIILGGMIASMQIKTVQKSRSGLTRMAKL 1078 Query: 1019 TFSEPAKEYEANFFP 1033 TF + A +P Sbjct: 1079 TFEDLTGSMPAMLWP 1093 >gi|269302450|gb|ACZ32550.1| DNA polymerase III, alpha subunit [Chlamydophila pneumoniae LPCoLN] Length = 1240 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 369/1083 (34%), Positives = 590/1083 (54%), Gaps = 72/1083 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQ---PAIAITDTNNLFSALEFSQKACAAG 66 +++ L HS YS+L+ ++++I D +A Q+ PA+A+TD NL+ A++F ++ G Sbjct: 2 TWIPLHCHSQYSVLD---AMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKG 58 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IQPIIGC+ I + ++ ++LL +GY+ L L S + + Sbjct: 59 IQPIIGCECYIAPGSRFDKKKEKRSR--AAHHLILLCKNEQGYRNLCILTS-LAFTEGFY 115 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 RI L++ +EGLI L+G S + A S + L F+ LF D + + Sbjct: 116 YFPRIDKDLLRQY-SEGLICLSGCLSSSVSDAAL-KSPEALLLELQWFQDLFKDDYFTEV 173 Query: 187 QRHRGYDR----YRESQVVQLAYTH------------------ELPLVATNNSLFLSEED 224 Q H+ + ++E + Q Y+ +P VATN+ +++ D Sbjct: 174 QLHKMSEESIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINAND 233 Query: 225 YEAHDVLMAVAHSTVVSQKDRPRVTP----------DHYLKNRSEMVSIFSDLPEALENT 274 ++AH++L+ V V + P ++Y K+ ++M +F D+PE + NT Sbjct: 234 WQAHEILLNVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNT 293 Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 +E+A+RC F P ++ + + E + R +A A +LA+ A+ K Y + Sbjct: 294 LEVAKRCDFTFDFSKKHYPIYVPESLKTLNSYTEED-RYQASAVFLKQLAEEALPKKYSS 352 Query: 335 QDY----------------RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378 + ++R+D E+ +I Y LIV D I WAK N IPVGPGR Sbjct: 353 EVLAHIAKKFPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGR 412 Query: 379 GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438 GSGAGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++ Sbjct: 413 GSGAGSVLLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERH 472 Query: 439 GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498 G + VAQIITFG+++AK A++DVGR L M S+V+ + K IP+ + +A+ D Sbjct: 473 GKDNVAQIITFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIPD--LNTTLSKALETDPDL 530 Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558 + + D ++++++ LEG R+ HAAG++I L+ +P+ S + TQ+ Sbjct: 531 HQLYINDAESAQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQY 590 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGT 617 +MK +E G++K D LGLKTLT + ++ + ++ G + ++ +P DD T+ LL T Sbjct: 591 SMKPVESVGMLKVDLLGLKTLTSINIAMSAIEKKTGQSLAMATLPLDDATTFSLLHQGKT 650 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +GIFQ+ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL Sbjct: 651 MGIFQMESKGMQELAKNLRPDLFEEIIAMGALYRPGPMDMIPSFINRKHGKEIIEYDHPL 710 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M++++E+F A Sbjct: 711 MESILKETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRAC 770 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 NGI +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D Sbjct: 771 NNGIDPELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSD 830 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA- 856 ++EK+ K ++A+ I I+PP +N F D I +++ AIKG+G I+E Sbjct: 831 DIEKVGKLIREAQSMGIPILPPHINVSSNHFVATDEGIRFAMGAIKGIGHGLIESIVEER 890 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 P++S+ DF R D KK++++ +ESL+ AG DCF +R LL S++ + + + Sbjct: 891 DHHGPYESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAIAKDK 950 Query: 917 KNRTNKHENIFAHEKGTFSDK----ITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVY 971 K + F G K I L K + + E+ +LG Y + HP+D Sbjct: 951 KEAASGVMTFFT--LGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTV 1008 Query: 972 KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAKEYEAN 1030 + L ++ + E G+ +R ++ K + K + + S+ YE Sbjct: 1009 RDHLSRLSVVLSGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYELP 1068 Query: 1031 FFP 1033 +P Sbjct: 1069 IWP 1071 >gi|289548089|ref|YP_003473077.1| DNA polymerase III subunit alpha [Thermocrinis albus DSM 14484] gi|289181706|gb|ADC88950.1| DNA polymerase III, alpha subunit [Thermocrinis albus DSM 14484] Length = 1150 Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust. Identities = 387/1011 (38%), Positives = 554/1011 (54%), Gaps = 89/1011 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA+ + ++ ++ A A+AITD NLF LEF + GI+P+ Sbjct: 4 FVHLHLHTQYSLLDGAIKIKDLAERAQAYGYRAVAITDHGNLFGLLEFYKTLKEKGIKPL 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPT---VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +G + +G T I+L+ EG + L L S Y + Sbjct: 64 LGMEAYFTTGSRFDRKGKGSDDNLTDRINHHIILIAKDQEGLKNLFRLSSLSYR-EGFYY 122 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI LQ+ GLI +T G + AE+ + K LFGD LY+ LQ Sbjct: 123 KPRIDYELLQKY-HRGLIAVTACLKGVPTYYASMGEERKAEEWVKKLKDLFGDDLYLELQ 181 Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKD 244 + ++ ++V + +A + LVAT ++ +L ED AH VLMA+ + QK+ Sbjct: 182 ANGLPEQETANRVLINIAKRFGVKLVATADAHYLDPEDKTAHSVLMALQMKKTLQDIQKE 241 Query: 245 RPRVTP-DHYLKNRSEMV----SIFSDLPEALENTVEIARRC--SFI-LQVHAPILPRFI 296 + + D + EM F +AL+NT+E+A +C SF L+ +LP+ Sbjct: 242 GLKYSVCDLHFAPPQEMWERFRGKFDGWEDALKNTLEVAEKCADSFPQLENKDYLLPKAY 301 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E EE L + A GL R A G +++Y RL++E+ + RM F+GY Sbjct: 302 EG------VEEGQLLEDLAREGLRRRQALGHCPD---SKEYWDRLEYEIEQVRRMGFAGY 352 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFI WAK +PVGPGRGS AGS+ AYAL ITD+DP++ LLFERFLNP+R+SMP Sbjct: 353 FLIVQDFINWAKNQGVPVGPGRGSAAGSLLAYALGITDVDPVKHGLLFERFLNPERISMP 412 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DFC + R++VI+YV+ KYG ++VAQIIT+ ++AK ALRD RAL +PYS DRL Sbjct: 413 DVDVDFCMEGREKVIQYVREKYGEDKVAQIITYNVMKAKQALRDAARALGLPYSVGDRLA 472 Query: 477 KLIPNDPAHP--VSLQAIA--------------------DDSRFREARLADPSVDRLLEI 514 KL+P +SL+ + + FR+ D + R++EI Sbjct: 473 KLVPPGDVQGSWLSLEEMVHTPLEELLEKYGHHRTDIEENVKTFRQLMETDAEIRRVVEI 532 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + KLEGL RH S HAAGIVI PL ++VP Y D TQ +M +EK GL+K DFL Sbjct: 533 ALKLEGLVRHTSLHAAGIVISPLPLEEVVPTYYD--DGQVATQLDMGQLEKLGLVKMDFL 590 Query: 575 GLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GLKTLT L + + +R VD IP DD T+ LL T G+FQLES GM++ L Sbjct: 591 GLKTLTELNAMRNLIRERHKADVDFLKIPLDDERTFELLRKGNTSGVFQLESKGMQRLLS 650 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 + PD ED++A ++LYRPGP+ + +V Y RK+GKE++ P ++P+LKET GV +Y Sbjct: 651 KLSPDRFEDLVAAIALYRPGPLKSGLVDSYVKRKHGKEEVEYPFPELEPVLKETYGVWVY 710 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQ+M+ +Q+L+G++ EAD LR+A+GKK KE M +E+FI GA + G + ++E Sbjct: 711 QEQIMKASQILAGFTPGEADTLRKAIGKKDKELMASLREKFIRGAVERGYKEEKITKLWE 770 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 KFA Y FNKSH+ AY +SY TA++K HY EF A ++ E ++ K DA++ Sbjct: 771 DFEKFASYSFNKSHSVAYGYLSYWTAYLKAHYTEEFFAVKLSYEKNDA-KFLALVNDAKK 829 Query: 812 FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870 I I+PP +N V F + GD + + LA IKG+G TA I++A + Sbjct: 830 HRITILPPDINKSHVHFVIEGDRTLRFGLARIKGIGEDTAYQIVKARK----TTWTQPSQ 885 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV---EKNR---TNKHE 924 + LN++ LE+L+ AGA D G SR LL++L++ V EKN ++ E Sbjct: 886 VARAAGLNKKALEALIKAGAFDFTGKSRTALLKALESKNALLGGVSLFEKNSQSTEDRQE 945 Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 +IF +EK VLGFY + HP+DV++ L Sbjct: 946 DIFHYEK-------------------------EVLGFYLTRHPIDVWEGFL 971 >gi|110636521|ref|YP_676728.1| DNA polymerase III subunit alpha [Cytophaga hutchinsonii ATCC 33406] gi|110279202|gb|ABG57388.1| DNA polymerase III, alpha subunit [Cytophaga hutchinsonii ATCC 33406] Length = 1194 Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust. Identities = 355/1059 (33%), Positives = 573/1059 (54%), Gaps = 69/1059 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VHS +SLL+GA S+ ++ K ++ A+A+TD N+ +F +A I+ Sbjct: 2 PDFAHLHVHSQFSLLDGAASIKGLVGKAVKNEMKALALTDHGNMHGIFQFVAEAVKNNIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GC+ + ++D K N K +LL EGY+ LI+L S Y+ Q + Sbjct: 62 PIVGCEFYL-VEDRFK-KNFTKDNKDVRYHQLLLAKNPEGYKNLIKLCSLGYIEGQYGKY 119 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI + + +GLI T + R + EK + LFG+ YV LQR Sbjct: 120 PRIDKELILQY-HKGLIATTCCLGAEVPRTILAKGEEAGEKAFKWWLDLFGEDYYVELQR 178 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ ++V ++LA +++P++A+N+S ++ ++D AHD+L+ + S Sbjct: 179 HDIKEQNIVNEVLIKLARKYQVPIIASNDSHYVDQKDSNAHDILLCINTGEKQSTPTMKD 238 Query: 248 VTPDH---------------YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + D Y K + EM ++FSD+PEA++NT++I + + +L Sbjct: 239 FSDDESMMKGRRFAFANDQFYFKTKEEMSTLFSDIPEAIDNTMQIVDKVEILKLKQDILL 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E +++N L++ G R + ++RLDFEL+ I M Sbjct: 299 PNY---EIPSTFLDQDNYLQHLTYEGARNRYVD-------VTPEIKERLDFELHTIRTMG 348 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F+GYFLIV DFI ++ + +GPGRGS AGS AY + IT+IDP++++LLFERFLNPDR Sbjct: 349 FAGYFLIVQDFINKGREIGVLIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPDR 408 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 SMPD D DF + R +VI YV KYG ++VAQI+T+G++ AK +++DV R L +P + Sbjct: 409 KSMPDIDTDFDDEGRQKVIDYVVEKYGKKQVAQIVTYGTMAAKMSIKDVARVLDLPLQES 468 Query: 473 DRLCKLIPNDPA-------------------------HPVSLQAIADDSRFREARLADPS 507 + L KL+P+ P ++ + I + + RE L D Sbjct: 469 NALAKLVPDKPGIELNWVMKGPMKASDKKNEKDKTLTEELTPEDIENVKKLREM-LDDEG 527 Query: 508 V--DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 +L+ + LEG R HAAGI+I + L ++P++ S+L VTQF+ K IE Sbjct: 528 TLASDVLKEALILEGSVRGTGIHAAGIIIAPKDLYDIIPVFTAKDSELLVTQFDGKVIED 587 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 AG+IK DFLGLKTLT+++ +L + + G+K+D+ IP DD +T+ L T FQ E Sbjct: 588 AGVIKMDFLGLKTLTIIRDALKMIEENHGIKIDIDYIPLDDAKTFELYQKGETNATFQFE 647 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L ++PD ED+IA+ +LYRPGPI+ I + RK GKE+IV P ++ L + Sbjct: 648 SAGMQKHLINLKPDKFEDLIAMNALYRPGPIEYIPKFIQRKLGKEEIVYDLPEMEEYLGD 707 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM ++Q L+G++ +ADVLR+AMGKK + +DK K +FI GA G+ Sbjct: 708 TYGITVYQEQVMLLSQKLAGFTKGDADVLRKAMGKKDRATLDKMKGKFIEGAVAKGLDPK 767 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 + ++ FA Y FNKSH+ YA ++YQT ++K +YP E++A+ +T + N +KI Sbjct: 768 VCEKVWTDWEAFAQYAFNKSHSTCYAFVAYQTGYLKANYPSEYMASVLTHNLSNFDKISF 827 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPF 862 F ++ ++ + ++ P VN F V N +I + + AIKGVG + I+ E A+ PF Sbjct: 828 FMEECQRMGMAVLGPDVNESSYQFSVNSNGQIRFGMGAIKGVGEGPVQAIVDERKANGPF 887 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALD---------CFGYSRMQLLQSLDNIQKYAQ 913 DF SRV+ + ++++ ESL AGALD F + + + L+ +Y Sbjct: 888 KDFFDFVSRVNLRAVSKKTFESLALAGALDYFTELHRAQYFNVAERETITFLEKAIRYGN 947 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 + + ++F + + + + E+ ++GFY SGHPLD +K Sbjct: 948 AFQTEDDSNQSSLFGDSSSAKPAPPKITPCEEWGNIEKLKKEKEIVGFYISGHPLDQFKL 1007 Query: 974 ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E +++ +G ++ +A +V ++++ G Sbjct: 1008 EIDNFCNCPLENVMSSPQGKDLTVAGIVTKVNVRQSKNG 1046 >gi|325067134|ref|ZP_08125807.1| DNA polymerase III subunit alpha [Actinomyces oris K20] gi|326771682|ref|ZP_08230967.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505] gi|326637815|gb|EGE38716.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505] Length = 1197 Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust. Identities = 368/1077 (34%), Positives = 585/1077 (54%), Gaps = 70/1077 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA + + + + QPA+AITD +F A EF A AAGI+PI Sbjct: 16 FVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEFYAAATAAGIKPI 75 Query: 71 IGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 IG + + + Q + ++ +G + + LL EG L+ Sbjct: 76 IGVEAYMTPGTSRFDKTRVFWGDESQRSDDVSARG-----SYTHMTLLSRNNEGLHNLMR 130 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 + S L Q ++ RI L + GLI TG S + A + Sbjct: 131 MDSFASLEGQWGKAPRIDRELLSRYAS-GLIGSTGCPSSEVQTRLRLGQWDEALRVAGEL 189 Query: 175 KKLFGDRL-YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG YV L H R ++ ++++A PL+ATN+S ++ ED D ++ Sbjct: 190 QDIFGKEFFYVELMDHGLEIEQRVTKDLLRIAKEIGAPLLATNDSHYVRPEDRTIQDAML 249 Query: 233 AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---H 288 + +V+S DR + D +YL+ +EM +FS++P+A +NT+ +A +C + Sbjct: 250 CINSGSVLSDPDRFKFDGDTYYLRPGAEMRRLFSEMPQACDNTLLVAEQCDVHFRTVDEG 309 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 A +P F E + +E+ + G++ R G +D R++ ++E++VI Sbjct: 310 ASYMPAFPVPEGE----TDESWFIKECWRGMDRRF------NGDIPEDCRKQAEYEISVI 359 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR L+FERFL Sbjct: 360 TQMGFPGYFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIFERFL 419 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D R + P Sbjct: 420 NPERISMPDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRVMGYP 479 Query: 469 YSQVDRLCKLIPND-PAHPVSLQAI---ADD-----SRFREARLADPSVDRLLEISQKLE 519 Y+ DRL K +P +S++ I AD+ FR+ DP +++E+++ LE Sbjct: 480 YAVGDRLTKAMPPSVQGKDISIKGIFNPADERYGEAEEFRKLHAEDPDAQKIVELAKGLE 539 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGL+ L Sbjct: 540 GMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLGLRNL 599 Query: 580 TLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +L+ + G +D+ + DD TY LL+ TLG+FQL+ GMR L M+PD Sbjct: 600 TVISDALENIVANGKPALDIDHVELDDRATYELLSRGETLGVFQLDGGGMRTLLRLMKPD 659 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQ 692 EDI A+ +LYRPGP+ ++ Y RKNG ++++ IHP +DP+L T G+I+YQ Sbjct: 660 NFEDISAVGALYRPGPMGAESHTNYALRKNGLQEVIPIHPELKEALDPILGTTHGLIVYQ 719 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM+IA L+G+S+ +AD LR+AMGKK + + K F +G ++G SK ++++ Sbjct: 720 EQVMKIATDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQSGFSKESVKTLWDV 779 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+ + + R Sbjct: 780 VVPFAKYAFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGECRHM 839 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871 I ++PP VN F + + L+A++ VG I+ A DK F S EDF + Sbjct: 840 GITVLPPDVNASRAQFSAVGEDVRFGLSAVRNVGINVVDAIVAAREDKGEFTSFEDFLDK 899 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + N+R ++SL+ AGA D G++R L ++ V++N ++FA Sbjct: 900 VPAVVCNKRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLFASLM 959 Query: 932 GTF--SDKITLEKFSVENSSV----------RFENEQRVLGFYFSGHPLDVYKPILRKMG 979 G +D V +S V + E+ +LG Y S HPL + +L K+ Sbjct: 960 GGSDDADDSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLLGKLA 1019 Query: 980 ---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I E+ G + +A ++ S +K T++G+ + A E FFP Sbjct: 1020 DKEISELHENDELPDGAMVTIAGLITSLTRKTTKQGNLWAIAQVEDLAGSIEVLFFP 1076 >gi|194333751|ref|YP_002015611.1| DNA polymerase III subunit alpha [Prosthecochloris aestuarii DSM 271] gi|194311569|gb|ACF45964.1| DNA polymerase III, alpha subunit [Prosthecochloris aestuarii DSM 271] Length = 1190 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 363/1009 (35%), Positives = 554/1009 (54%), Gaps = 59/1009 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YS+ + + ++A+TD + +F+ E A AG++ I Sbjct: 6 FVHLHTHTHYSMQSSPIFPKELFSACKKAGMESVAVTDYSAMFNMPELFSLASDAGVKLI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ + QD + G+ PS++LLV EGY+ L L+SR + Sbjct: 66 IGSEVYLLEQD---AHHNGR--HSVSPSLILLVKNEEGYKNLCILLSRAAREGFVNATPH 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + S L+E GLI L+G +G I RA + A + +FGD Y+ LQRH Sbjct: 121 VDSSLLKEYHA-GLICLSGYYAGRIGRALLAGNRDEAASFTAFYHDIFGDDFYLELQRHF 179 Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 +D S + LA H + LVATNN +L ++D + ++A+ +S + + Sbjct: 180 ATFDDQLNSDTIALAEQHGVQLVATNNVHYLQKKDAGRYRAMVAIRTKERLSSSNLQCLP 239 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +HY K+ EM S+FS+ L NT IA +CS++ P LP F+ E +E Sbjct: 240 NSEHYFKSSDEMASLFSNEHHELSNTAAIAAKCSYVFCQQEPRLPHFLLPEG---FSDEA 296 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR+ G + A ++G Q R++ EL VI M FS YFLIV+D I ++ Sbjct: 297 EYLRHLTYEGAREKYADPE-SQGLTWQQVEDRIEKELGVIISMGFSSYFLIVSDLIAASR 355 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R+SMPD DIDF + Sbjct: 356 RLGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGKQ 415 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 V+ Y +KYG + VA+++ G+L A+AA+RD GR L++P +VDRL KL+P+ P + Sbjct: 416 RVLDYTVDKYGDDSVAKVVAIGTLGARAAIRDAGRVLEVPLQEVDRLAKLVPSKPGTTLQ 475 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 Q + + + RE + L++ + LEG R+ S HA +VI D PL + VP+Y Sbjct: 476 -QGLDEVNELRELVESSSQNSTLMDYALALEGRARNVSMHAGAVVITDGPLEEQVPLYVS 534 Query: 549 VRSDLP---------------------------VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 + + VTQF+ WIE AGL+K D+LGL+TL + Sbjct: 535 NKIETEARKFADEYNEDELERGALKSNSDEKQVVTQFDKNWIETAGLLKIDYLGLETLAV 594 Query: 582 LQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++L + +R +V +L +P D+ + + + GIFQ ES GM+ + +QP I Sbjct: 595 IDETLHLIKKRHAEVIELETVPMDNKKAFRIFQEGKMAGIFQFESQGMQNYMMQLQPTQI 654 Query: 641 EDIIALVSLYRPGPIDNIV--------VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 DIIA+ +LYRPG ++ V ++ +RK+ +E I +HP+++ +LKET GVI+YQ Sbjct: 655 GDIIAMSALYRPGALNARVDPKRNAVDLFVDRKHNREPIDYMHPMLEEILKETYGVIVYQ 714 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQI+Q++ G+SL++AD LR+AMGKK E M K K F+ GA G+ +A IF+L Sbjct: 715 EQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMQKFKADFVEGAVNQGVHDKLANRIFDL 774 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 +A+FA YGFNKSH+AAY V++Y TA++K HYP EF+ A + E+ + ++K +AR F Sbjct: 775 MAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYPGEFMTAILNSEIGDTARMKHLTDEARSF 834 Query: 813 NIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLE 866 NI I+PP +NT F + D I L+AIK VG AR ++ + K + +L Sbjct: 835 NISILPPDINTSDALFSIDDVDGLPAIRVGLSAIKQVG-NAARAVVTSRLRRKKEYVNLF 893 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 D + VD + +NR+ LE L+ AGALD +R +L+ ++D K+ Q ++ T Sbjct: 894 DLTASVDLRAMNRKALECLILAGALDSIDPNRAKLIANIDKAIKFGQLQNRSVTLGQCGF 953 Query: 927 FAHEK-GTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 F+ + G D + ++ S + + E++++GFY S HPLD ++ Sbjct: 954 FSDDNAGGMQDSLYPDMDPADPMPDSEKLQAEKKLVGFYLSRHPLDPFR 1002 >gi|313156974|gb|EFR56406.1| putative DNA polymerase III subunit alpha [Alistipes sp. HGB5] Length = 1218 Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust. Identities = 367/1100 (33%), Positives = 579/1100 (52%), Gaps = 85/1100 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL VH+ YS+L+GA ++ ++ + A AIAITD N++ F A AG++ Sbjct: 2 PDFVHLHVHTQYSILDGAAAIKPLIKRAKALGMNAIAITDHGNMYGVKNFHDTATDAGVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GC++ + +++ + K ++LL EGY L ++VS Y +G Sbjct: 62 PILGCEVYV-VKNRFEKDKDEKAG----DHLILLAKNLEGYHNLCKMVS--YSFTEGFYY 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 L E EGLI + G + +A N + AE+ + FK +FG+ Y+ LQ Sbjct: 115 KPRIDKQLIEQYHEGLICCSACLGGEVPQAIMHNDIEEAERVVQWFKNIFGEDYYLELQL 174 Query: 189 HRGYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 H D +++ V ++LA + + + +N+ F+ ED AHD L+ + Sbjct: 175 HPSGDPQKDADVYENQLRVNKVILELAAKYGVKYICSNDVHFILAEDAVAHDHLICLNTG 234 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295 + +R R T YLK+ EM ++F D PEAL T+EIA +C HAP++P F Sbjct: 235 RDLDDPNRMRYTFQEYLKSPEEMAALFPDHPEALATTLEIADKCEDYKLTHAPLMPNFPP 294 Query: 296 ------------------IEKE--------CDDIQKEEE-----NELRNKAVAGLEVRLA 324 IE E C + + EE EL ++ + + Sbjct: 295 PEDFPIALGELRESFVKKIEDEEMLAKIGACATVPELEELVAGDKELSDRLMVAKQYCYL 354 Query: 325 QGAIAKGYHA-------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 + KG H + +R+ +EL+ I M F GYFLIV D+I+ A++ + VGPG Sbjct: 355 KDLTYKGAHMRYGDVLDEKTEERIKYELSTIEWMGFPGYFLIVWDYIRAAREMGVSVGPG 414 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS AGSV AY L IT+IDPL++ LLFERFLNP+R+S+PD D+DF +D R +V+RY K Sbjct: 415 RGSAAGSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRADVLRYCVQK 474 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAH-PVSLQAI 492 YG +RVAQI+TFG++ K A++DV R ++ S+ DRL KL+P+ D H + Sbjct: 475 YGQKRVAQIVTFGTMAPKMAIKDVARVQKLALSESDRLSKLVPDKVTPDKKHGETPFDFV 534 Query: 493 ADDSRFREARLADPS--VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 +S A P+ + L+ ++KLEG R HA G++IG L + PM Sbjct: 535 YKESPELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLEKFAPMAIAKD 594 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609 ++L V +F K +E GLIK DFLGL+TL++++ +++ + A GV VD+ I DD TY Sbjct: 595 AELNVVEFEGKEVESVGLIKMDFLGLRTLSIIKDAVENVKAVHGVDVDIDGISLDDAPTY 654 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 + T G+FQ ES GM++ L ++P+ ED+IA+ +LYRPGP++ I + RK+G+E Sbjct: 655 EVFARGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPMEYIPNFIARKHGQE 714 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + ++ L +T G+ +YQEQVM ++Q L+G++ EAD LR+AMGKK ++ +DK K Sbjct: 715 PVTYEIADMEEYLNDTYGITVYQEQVMLLSQKLAGFTGGEADTLRKAMGKKKRDVLDKMK 774 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI G + G + I I+ FA Y FNKSH+ YA ++YQT ++K HYP EF+A Sbjct: 775 PKFIEGCKQRGHDEKICDKIWGDWEAFASYAFNKSHSTCYAYVAYQTGYLKAHYPSEFMA 834 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---KVGDNRIYYSLAAIKGVG 846 A ++ + +++++ + + ++ I+++ P +N F K GD R + L A+KGVG Sbjct: 835 ALLSRNLADIKQLTLYMNECKRMGIRVLGPDINESMRTFSSNKAGDVR--FGLGAVKGVG 892 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS 904 I+ E +A+ F + D RV+ +NR+ E+L +AG D G+ R + + Sbjct: 893 EAAVESIIAERNANGRFKDIYDLMERVNFSAVNRKCFENLAYAGGFDSISGFHRGKFFGA 952 Query: 905 ----------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 ++ + +Y Q + + N +++F + L + + Sbjct: 953 DARDNTGVTFIEQLMRYGQRFQAEKNNAQQSLFGGGGHVDIQRPVLPACADWSQLETLAK 1012 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ ++G Y S HPLD YK I+ M E++ ++G I +A MVVS Q T+ G Sbjct: 1013 EREMIGHYLSAHPLDDYKIIINHMCKTQLTELENLEALKGQEIAVAGMVVSVQNLITKTG 1072 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 G + +E F Sbjct: 1073 KPWGKFVLEDYNGTHEFALF 1092 >gi|89898738|ref|YP_515848.1| DNA polymerase III subunit alpha [Chlamydophila felis Fe/C-56] gi|89332110|dbj|BAE81703.1| DNA polymerase III alpha subunit [Chlamydophila felis Fe/C-56] Length = 1241 Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust. Identities = 368/1080 (34%), Positives = 589/1080 (54%), Gaps = 67/1080 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ L HS YS+L+ S+ + + K Q P++A+TD NL+ A+EF ++ I+P Sbjct: 2 TWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECYQQDIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + K+ ++LL +GY+ L L+S + + Sbjct: 62 IIGCEVYVAPSSRFDKKKEKKSRVAN--HLILLCKNEQGYRNLC-LLSSLAFTEGFYYFP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L + +EGL+ L+ SG + +A S + EK L ++ LFG+ Y +Q H Sbjct: 119 RIDRELLSQY-SEGLVCLSACLSGSVAQAAL-ESEEALEKDLRWYQSLFGEDFYSEVQLH 176 Query: 190 R----------------GYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEA 227 + Y ++ E+Q V++ + + VATN+ ++ ED+ A Sbjct: 177 KMSEEKIASLGEEWLKHEYHQFIETQTKVNQAVLETSKRLGIRSVATNDIHYIHPEDWLA 236 Query: 228 HDVLMAVA----------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 H++L+ V ++ + + K + + ++Y K+ EM ++F+D PE + NT+E+ Sbjct: 237 HEILLNVQLGETIRIAKQNTYIPNPKRKAFRSREYYFKSPKEMANLFADHPETISNTLEV 296 Query: 278 ARRCSFILQV---HAPI-LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA------ 327 A +C+ L H PI +P F++++ Q E E + A L +G Sbjct: 297 ADKCNLKLDFSVKHYPIYVPEFLKEK----QTYTEEERYTASSAFLRELCEKGLLKYTPD 352 Query: 328 ----IAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 I+K + +D ++R++ E+++I Y LIV D I WAK + IPVGPGRG Sbjct: 353 KLAHISKKFPNRDPLELVKERMEMEMSIIIPKGMCDYLLIVWDIIHWAKAHGIPVGPGRG 412 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 SGAGSV + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G Sbjct: 413 SGAGSVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHG 472 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499 VAQIITFG+++AK A++DVGR L + S+V+ + K IP A +A+ D Sbjct: 473 KNNVAQIITFGTMKAKMAVKDVGRTLDVSLSKVNLIAKHIPELNA--TLSKALETDPHLN 530 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 + D ++++++ +LEG R+ HAAG++I L+ +P+ S + TQF+ Sbjct: 531 QLYADDAEAAQVIDMAMQLEGSIRNTGVHAAGVIICGDHLTNHIPICISKDSTMITTQFS 590 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTL 618 MK +E G++K DFLGLKTLT + ++ + ++ G ++++ +P DD T+ LL T+ Sbjct: 591 MKPVESVGMLKVDFLGLKTLTSIHIAIQAIQKKTGKLLEMATLPLDDKTTFSLLHQGKTM 650 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 GIFQ+ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPLI Sbjct: 651 GIFQMESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEVITYDHPLI 710 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + +LKET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK +M +++ +F A K Sbjct: 711 ESILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDINQMLQERTKFCERACK 770 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NGI +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D+ Sbjct: 771 NGIDADLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDD 830 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-S 857 +EK+ K +A NI ++PP +N +F D I +++ AIKG+G I+E Sbjct: 831 IEKVGKLIHEAHSMNICVLPPDINESGTNFVATDKGIRFAMGAIKGIGKGLVESIIEERE 890 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 P+ +++DF R D KK+ ++ E+L+ AG D F R L++I + +K Sbjct: 891 KHGPYQNIQDFLKRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQAVLESIYESISKEKK 950 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 F+ I L + + E+ +LG Y + HP+D K I Sbjct: 951 EAATGVMTFFSLNTMLKEQPIVLTPTTHIVRRQKKEILKKEKELLGIYLTEHPMDAVKDI 1010 Query: 975 LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033 L ++ + E + G IR ++ + + KG R + ++ YE +P Sbjct: 1011 LPRLSVVSPGEFESLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1070 >gi|326801307|ref|YP_004319126.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21] gi|326552071|gb|ADZ80456.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21] Length = 1493 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 372/1122 (33%), Positives = 589/1122 (52%), Gaps = 113/1122 (10%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQ 60 K +VHL H+ +S+L+ +S+ +++ A + PA+AITD N+ A F Sbjct: 256 KEVDYVHLHNHTQFSILQSTISVADLVKAAAKHRMPAVAITDHANMMGAFHFVSNVLNHN 315 Query: 61 KACAAG---------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105 KA A I+PI+GC+ + DN + KT IV+L Sbjct: 316 KAAEAKNKTAVENGEEPSEVIIKPIVGCEFFV--CDN----HADKTRKDNGYQIVMLAKN 369 Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165 GY L ++ S Y D RI +++ E +I+L+G G I Sbjct: 370 KAGYHNLAKMSSLAYT-DGFYYVPRIDRKIIEQY-KENIIVLSGNLYGEIPNKLLNMGEN 427 Query: 166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224 AE+ L+ +K+ FG+ Y+ L RH D R + +V+LA H + L+ATNN+ ++++ED Sbjct: 428 QAEEALIWWKETFGEDFYIELMRHGQEDENRINASLVELARKHGVKLIATNNTYYINKED 487 Query: 225 YEAHDVLMAVAHS-TVVSQKDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 +HD+L+ V + + + K R R ++Y K+ EM +F+D+PEA+ N EI Sbjct: 488 AHSHDILLCVRDAEKLATPKGRGRGFRYGLPNEEYYFKSGEEMKKLFTDIPEAIANIQEI 547 Query: 278 ARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329 + +LP+F E + D ++ E LR+ G R ++ Sbjct: 548 VDKVEVYSLYRNVLLPKFDIPEEFQVTEDQLDGGKRGENKYLRHLTYVGAAKRYSE---- 603 Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 + R+RLDFEL I + + GYFLIV DFI A++ + VGPGRGS AGS AY Sbjct: 604 ---ITPEIRERLDFELQTIEKTGYPGYFLIVQDFIAAAREIGVSVGPGRGSAAGSAVAYC 660 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L IT+IDP+ + LLFERFLNPDR+SMPD DIDF + R V+ YV NKYG +VAQIIT+ Sbjct: 661 LGITNIDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIITY 720 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-SLQAIADDSRFREARLADPSV 508 G++ AK+++RD R L +P + D++ KL+PN + + ++ A A S R L SV Sbjct: 721 GTMAAKSSIRDTARVLDLPLFEADKIAKLVPNLKLNKLFNMDAQALKSALRTEELE--SV 778 Query: 509 DRLLEIS-------------QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 L+ ++ + LEG R+ HA G++I ++ VP+ S+L V Sbjct: 779 RELINLANGNDLGAETIRQAKALEGSVRNTGIHACGVIITPDDITNFVPVSTAKDSELYV 838 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTT 614 TQF+ +E AGL+K DFLGLKTLTL++ ++ + +G++++ P DD +TY L Sbjct: 839 TQFDNSVVESAGLLKMDFLGLKTLTLIKDTVSLVKHTKGIELNPDFFPIDDVKTYELFQR 898 Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674 T+GIFQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RKNG+E I Sbjct: 899 GETVGIFQYESPGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFIRRKNGEEPITYD 958 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 + LKET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK ++ +DK K +F+ Sbjct: 959 LEACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQRDVLDKMKPKFVQ 1018 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 A++ G + + I++ FA Y FNKSH+ YA ++YQTA++K HYP E++AA ++ Sbjct: 1019 QAAEKGHDEKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSN 1078 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHI 853 M+++++I F ++ ++ + ++ P VN F V D I + + A+KGVG I Sbjct: 1079 NMNDIKQISFFMEECKRMGLTVLGPDVNESFYKFTVNDQGAIRFGIGAVKGVGAGAVDTI 1138 Query: 854 MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ--------SL 905 + + + S+ DF R + + +N++V ESLV++GA DCFG +R Q + Sbjct: 1139 VSNRDEGKYLSIADFARRSNPRTINKKVYESLVYSGAFDCFGINRAQFFHVPEGLSQNGI 1198 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + + KY + N+ N ++F + +L + E+ V+ Y +G Sbjct: 1199 ERLIKYTNDYQYNKNNAAMSLFGGTSDADIPEPSLPPCPEWGLMEKLRYEKNVVSMYITG 1258 Query: 966 HPLDVYK--------------PILRKM--------------GIKGYEESV-------ATI 990 HP+D Y+ ++ KM G++ EE V A I Sbjct: 1259 HPMDDYRLELEYFCQHKVSQLHLIDKMKAGAGKDADNGQDAGLESPEEGVEDVKTEFAKI 1318 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++ + MV + T+ G G +TF + + YE F Sbjct: 1319 KNKDLVVGGMVTAVYHGMTKTGKPYGRMTFEDYSDSYEMALF 1360 >gi|311742780|ref|ZP_07716589.1| DNA-directed DNA polymerase III alpha subunit [Aeromicrobium marinum DSM 15272] gi|311314408|gb|EFQ84316.1| DNA-directed DNA polymerase III alpha subunit [Aeromicrobium marinum DSM 15272] Length = 1175 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 387/1075 (36%), Positives = 569/1075 (52%), Gaps = 77/1075 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA L+ + ++ A PAIA+TD NL A +F KA A G++P Sbjct: 6 SFVHLHVHTEYSMLDGASLLDGLFERTAELGMPAIAMTDHGNLHGAYDFYSKARAHGVKP 65 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPF-----------PTVPSIVLLVSTAEGYQRLIELVSR 118 IIG L+ + N + + + + + LL + EG L L SR Sbjct: 66 IIG--LEAYLTPNTHRSEKKRVQWNKGGDDDVAGGGAYTHMTLLAESTEGMHNLFRLSSR 123 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 L +G+ L +GLI TG SG I + + A + F+ +F Sbjct: 124 SSL--EGQYYKPRADRELLHTYAKGLIGTTGCPSGEIQTWLRIGNYEKARESAAEFQDIF 181 Query: 179 G-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 G + ++ L H G D R R+ +++L LP +ATN+S + ED +AHD L+ V Sbjct: 182 GRENFFLELMDH-GLDIETRVRDG-LMRLKRDLALPAIATNDSHYTHPEDADAHDALICV 239 Query: 235 AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAP 290 + +S +R + +Y+K+ +EM S++ D +PEA +NT+ IA RC QV Sbjct: 240 SSGKTISDPNRLKFDGGGYYIKSAAEMRSLWEDKHEMPEACDNTLLIAERC----QVE-- 293 Query: 291 ILPRFIEKECDDIQKE-------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 F E + + EE+ + G+ R + + + R+R + Sbjct: 294 ----FTESNGGYMARADVPAGHTEESWFVEEVWRGIHARYGETV------SDEVRERTEM 343 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL V+ + GY+L+VADFI WAK N I VGPGRGSGAGS+ AYAL ITD+ PL L+ Sbjct: 344 ELQVVRDKGYCGYYLVVADFIGWAKDNGIRVGPGRGSGAGSIAAYALRITDLCPLTHGLI 403 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R SMPDFDIDF + RR EVIRYV KYG ERVA I TFG L++KAA++D R Sbjct: 404 FERFLNPERPSMPDFDIDFDERRRAEVIRYVSEKYGSERVAMIATFGRLKSKAAIKDANR 463 Query: 464 ALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLADPSVDRLLEI 514 L P++ +++ K +P D V L A+ DD FR+ AD V ++ + Sbjct: 464 VLDFPFAMGEKITKALPADVMGKGVPLPALFDDKHSRYGDGKDFRDLHAADAEVRKIYDT 523 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + LEG R HAAG+++ PL +VP+ + + +TQF+ E GL+K DFL Sbjct: 524 ALGLEGQIRQWGVHAAGVIMSSEPLIDIVPIMKREQDGAIITQFDYPMCESLGLVKMDFL 583 Query: 575 GLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT+L ++ + + RGV + L + FDD E Y LL TLG+FQL+ MR L Sbjct: 584 GLRNLTVLDDAVSNIRSNRGVDLVLEDLTFDDPEAYALLGRGDTLGVFQLDGGPMRALLR 643 Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQG 687 MQPD EDI A+++LYRPGP+ ++ V Y RK GK+ I IHP + P+L T G Sbjct: 644 QMQPDNFEDISAVIALYRPGPMGANSHVNYALRKTGKQPIDYIHPELTEALKPILGTTYG 703 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVM IAQ L+G++L +AD LRRAMGKK +E ++K+ F +G + G SK Sbjct: 704 LIVYQEQVMSIAQELAGFTLGQADNLRRAMGKKKREVLEKEFVGFEAGMMERGYSKGAIK 763 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++++L FADY FNK+H+AAY VISY TA++K YP E++AA +T + +K + Sbjct: 764 TLWDILVPFADYAFNKAHSAAYGVISYWTAYLKARYPAEYMAALLTSTRGDKDKSAIYLG 823 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867 + R+ IQ++PP VN F I + L+AI+ VG I+E + D Sbjct: 824 ECRRLGIQVLPPDVNDSIGTFASVGEDIRFGLSAIRNVGDNVVAGIVEGRQAGAYTDFPD 883 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +V N+R+L+SL+ +GA D G+ R L D +++N +++F Sbjct: 884 FLDKVPLHVCNKRMLDSLIKSGAFDSLGHRRRALTTIADEAVDAYVDLKRNAAIGQDSLF 943 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIK 981 D + SV + +E E+ +LG Y S HPL + +LR Sbjct: 944 ----DGLDDASSGITISVPDQMPEWEKTQLLAFERDMLGLYVSDHPLRGLEHVLRASSDC 999 Query: 982 GYEE-SVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V T R G+ + + ++ ++ ++KG +T + E FP Sbjct: 1000 SLGELMVDTERADGSTVTICGLITGVSRRMSKKGDTWASITVEDLEGGVEVMVFP 1054 >gi|257413195|ref|ZP_04742281.2| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82] gi|257204357|gb|EEV02642.1| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82] Length = 1162 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 371/1056 (35%), Positives = 598/1056 (56%), Gaps = 50/1056 (4%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 ++S SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F + A AA Sbjct: 4 KQSMSFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAA 63 Query: 66 GIQPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+P++GC++ + + + G + +VLL +GYQ L+++VS+ ++ + Sbjct: 64 GIKPVLGCEVYVAPGSRFDRELSHGDDRYY---HLVLLAENNQGYQNLMKIVSKGFV-EG 119 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183 R+ + L E EG+I L+ +G + R + A++ ++K FG + Sbjct: 120 YYYKPRVDMEVL-ETYHEGIIALSACLAGEVQRYLVRGLYEEAKETACKYEKCFGKGNFF 178 Query: 184 VNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H D + + +++++ + LVATN+ + ED E HD+L+ + +S Sbjct: 179 LELQDHGIPDQKTVNAGLMRMSEETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSD 238 Query: 243 KDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++R R Y +K+ EM ++F +A++NT +IA RC+ ++ LP F E Sbjct: 239 ENRMRYEGGQYFVKSEEEMRALFPYAAQAIDNTQKIADRCNVEIEFGVTKLPHFDVPEGY 298 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D L GL R ++ +LD+EL+VI +M + YFLIV Sbjct: 299 D----SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVW 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +A+ + IPVGPGRGS AGS+ +Y IT+IDP+R++LLFERFLNP+R++MPD DID Sbjct: 348 DFINYARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDID 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR EVI YV KYG + V QI+TFG+L A+ +RDVGR + +PY+ D + K IPN Sbjct: 408 FCYERRSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPN 467 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A+ + R +D +V RL++++++LEGL RH S HAAG+VI + + + Sbjct: 468 ELNITID-KALIMNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDE 526 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 VP+ R + TQF M IE+ GL+K DFLGL+TLT++ ++ + + G+K+D+ Sbjct: 527 YVPLSRSSDGTI-TTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDN 585 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I +DD + + T G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Sbjct: 586 IDYDDKKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPK 645 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y KN E + + ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK Sbjct: 646 YIKGKNEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKK 705 Query: 721 IKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 + +D +++ F I G NGIS+ A I++ + FA Y FNKSHAAAYAV+ Sbjct: 706 KQYVIDAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVV 765 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTA++K +YPVEF+AA MT +DN K+ ++ RQ I+++ P +N F Sbjct: 766 AYQTAYLKYYYPVEFMAALMTSVVDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATK 825 Query: 833 NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 + I Y + AIK +G I+ E A+ + +L DF SRV +++N+R +E+L+ AGA Sbjct: 826 DGIRYGMYAIKSIGRQVIDIILAEREANGKYTTLSDFLSRVAGREVNKRAVENLIKAGAC 885 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEKFSVE 946 D +R Q+L + + +KN ++F EK + + +E+++ E Sbjct: 886 DGLDGNRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLFSEEEKKAYEVRFPNVEEYTKE 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY--------EESVATIRGN-NIRL 997 ++ E+ VLG Y SGHPL+ Y+ RK I E + I+ N ++ + Sbjct: 946 ---IKLGFEKEVLGIYLSGHPLEEYEEKWRK-NISAVTADFMLDEETNAVKIKDNQSVVI 1001 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ K K T++ + ++T + E FP Sbjct: 1002 GGIITEKTIKYTKQNKAMAFITVEDLFGTVEVIIFP 1037 >gi|297571263|ref|YP_003697037.1| DNA polymerase III subunit alpha [Arcanobacterium haemolyticum DSM 20595] gi|296931610|gb|ADH92418.1| DNA polymerase III, alpha subunit [Arcanobacterium haemolyticum DSM 20595] Length = 1182 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 378/1073 (35%), Positives = 580/1073 (54%), Gaps = 67/1073 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+GA +N ++ ++A +QPA+AITD LF A E + A AAGI+P Sbjct: 5 SFAHLHVHTDYSLLDGAAKINKLVAEVARLEQPAVAITDHGYLFGAYEMYKAATAAGIKP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQRLIELV 116 IIG L+ M +Q + + T + LL G L + Sbjct: 65 IIG--LEAYMTPGTSRFDQTRQLWGTPAQRSDDVSARGAYTHMTLLSENNTGMHNLFRMN 122 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S L Q + R+ L E +GLI G SG I A K + Sbjct: 123 SLASLEGQMGKWPRMDRELL-ETYHDGLIGTAGCPSGEIQTRLRLGQWDEALKAAGELQD 181 Query: 177 LFG-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG D YV + H G D R Q ++++A PL+ATN+S ++ ED + D ++ Sbjct: 182 IFGKDNFYVEVMDH-GLDIERRVQNDLLKIARMIGAPLIATNDSHYVKREDRDIQDAMLC 240 Query: 234 VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA--- 289 + + + DR + D +Y+K+ EM F DLPEA++NT+ +A RC+ Q A Sbjct: 241 INSGSTLMDPDRFKFDGDGYYIKSSEEMHRQFEDLPEAIDNTLVVAERCNVSFQTTADGI 300 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P F +D E + N+ AGL R G R+R D+E+ VI Sbjct: 301 SYMPEFPVPPGED----ETSWFINQVEAGLLKRY------NGTVPAHVRERADYEVGVIT 350 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F GYFL+V+D+I+WAKKN I VGPGRGSGAGS+ AYAL IT +DP++ LLFERFLN Sbjct: 351 SMGFPGYFLVVSDYIKWAKKNGIRVGPGRGSGAGSMVAYALEITQLDPIKHELLFERFLN 410 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+S+PD D+DF RRDEVI+YV+ KYG ++VAQ++T+G+++ K AL+D R L MP+ Sbjct: 411 PERVSLPDIDVDFDDRRRDEVIKYVEEKYGSDKVAQVVTYGTIKTKQALKDAARVLGMPF 470 Query: 470 SQVDRLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEG 520 D+L K +P D ++++ I + FRE ++ R+ + + LEG Sbjct: 471 QMGDQLTKALPPDVQGKSIAVKDIYNPEAARYNEAGEFREFVDSNAEAKRVFDFALGLEG 530 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 + R HA +++ L+ ++P+ + ++ +TQF E+ GL+K DFLGL LT Sbjct: 531 MTRQTGVHACAVIMSSTALTDVIPIMKRLQDGAIITQFEYPQCEELGLVKMDFLGLSNLT 590 Query: 581 LLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +++ +L + G + ++ IP DD ETY LL TLGIFQL+S GMRQ L+ M+PD Sbjct: 591 VIEGALTNIRNNGKEAPNIDEIPLDDVETYELLARAETLGIFQLDSPGMRQLLKQMKPDT 650 Query: 640 IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQE 693 DI A+ +LYRPGP+ ++ Y RKNG ++ IHP ++ +L T G+I++QE Sbjct: 651 FADISAVSALYRPGPMGANSHTNYALRKNGLQEKTPIHPELATALEDILGNTHGLIVFQE 710 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVM+IAQ L+G++L +AD+LR+AMGKK + + KQ + F G +G S ++++L Sbjct: 711 QVMRIAQKLAGFTLGQADILRKAMGKKKADVLQKQFKGFAQGMRDHGYSDECINTLWDIL 770 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSH+ AYA+++YQTA++K HYP E++A+ +T +N K+ + D R+ Sbjct: 771 VPFAQYAFNKSHSEAYALVTYQTAYLKAHYPSEYMASLLTSNQNNKTKVATYLADTRRMG 830 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872 I++ P VN + N + L++++ VG I+E +K + S +DF +V Sbjct: 831 IRVNVPDVNKSMDVYSAVGNEVRVGLSSVRNVGKNVVDGIIETRKEKGEYTSFQDFLDKV 890 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 + LN+R +E L+ AGA D GYSR L+ + + V++N ++F G Sbjct: 891 PAAVLNKRAVECLIKAGAFDSLGYSRRALVSIHEEAIEAVLPVKRNEAGGQFDLFG---G 947 Query: 933 TFSDKITLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKG 982 + + F+VE + + E+ +LG Y S HPL + L ++ + G Sbjct: 948 LGENNPIAQSFNVEIPDLPEWDKKEKLNIERDMLGLYVSDHPLSGLEAFLDRVADHTVLG 1007 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW--VTFSEPAKEYEANFFP 1033 + + G + +A ++ S Q + ++K + W T + E NFFP Sbjct: 1008 IQNDENPVDGQMVTVAGLITSVQTRISQKNGKT-WATATIEDFTGSIEVNFFP 1059 >gi|227484665|ref|ZP_03914981.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] gi|227237385|gb|EEI87400.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] Length = 1148 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 364/1060 (34%), Positives = 587/1060 (55%), Gaps = 60/1060 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + F HL +H+ YSLL+G ++ +LD+ ++AITD ++ +EF ++A GI Sbjct: 2 TTKFTHLHLHTEYSLLDGFTRIDELLDRCKELGMDSVAITDHGQMYGVIEFYKQAQKRGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPT---VPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +PIIGC++ + +D+ K PT ++LL GY+ L+++VS Y+ + Sbjct: 62 KPIIGCEVYVSERDH-------KIKDPTNRRYYHLILLAENNTGYKNLVKIVSEAYV-NG 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183 R+ +++ TEGLI L+ +G +++ AE+ L ++K FG + Sbjct: 114 FYYKPRVSFDFIKN-HTEGLIALSACLNGEVNQRILEGDMGGAEETALKYEKAFGKGSFF 172 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 + +Q H ++ + +Q ++ Y H+ + +VATN+ ++++ED DVL+ + ++ Sbjct: 173 LEVQDHGMAEQKKVNQGIK--YLHKKLGIEMVATNDVHYINKEDSYYQDVLLCIQTGALI 230 Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 ++R R+ T + YLK+ M +IF D A+ENT +IA RC ++ H P LP + Sbjct: 231 KDENRMRMPTREFYLKDADTMATIFKDYERAIENTRKIADRCQVEIKFHQPHLPYY---- 286 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYF 357 K E L N L L +A+ Y + +R E++VI M + YF Sbjct: 287 ----TKVPEG-LTNLDYLKL---LVNDGLAQKYDQVTDEIVKRAKMEIDVINSMGYVDYF 338 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DF+ +A+KN+I VGPGRGS AGS+ +YAL IT IDPL+++L+FERFLNP+R+SMPD Sbjct: 339 LIVWDFVNYARKNDIAVGPGRGSAAGSLVSYALDITQIDPLKYNLIFERFLNPERVSMPD 398 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DIDF RD+V+ YV + YG + V+QI+TFG +QA+ A+RDVGR L + Y +VD + K Sbjct: 399 IDIDFDYVLRDKVVEYVNDLYGRDHVSQIVTFGRMQARNAIRDVGRVLDIAYGKVDTIAK 458 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + +A+ + FR + D RL++ ++KLE L RH S HAAG+VI Sbjct: 459 QIPATIGMTID-KALVESDAFRASYEKDAEGKRLIDTAKKLEALPRHTSIHAAGVVISKD 517 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKV 596 PL+ ++P+ + +D V+QF+M IE+ GL+K DFLGL+ LT+++ ++ D GV + Sbjct: 518 PLTDIIPLA--LSNDQVVSQFDMTEIEELGLLKMDFLGLRNLTVIKDTIKDIKKNYGVDL 575 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ I +D T+G+FQ ES+GMR L+ ++P +D+IA SL+RPGP+D Sbjct: 576 DIRKIDVNDVNVIKQFNQAKTIGLFQFESAGMRAFLKNLKPTVFDDLIAANSLFRPGPMD 635 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I Y + KN + + + + P+L T G+I+YQEQVMQI Q L+GYSL EAD LRRA Sbjct: 636 EIPKYIHNKNNPDDVTFLDEKLKPILGVTYGIIVYQEQVMQIVQQLAGYSLGEADNLRRA 695 Query: 717 MGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKS 764 M KK M++ ++ FI+ GA +NG+ + +A I++ + FA Y FNKS Sbjct: 696 MSKKKMAVMEENRDVFINGKVGEDGKVIIPGAVRNGVDRQVANTIYDEMISFAKYAFNKS 755 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAY++++ QTA++K +YP E++A ++ MD K+ + + ++ I+++ P +N Sbjct: 756 HSAAYSLVAVQTAYLKHYYPEEYMANLISSVMDQSGKLYSYVSETKRLGIEVLAPDINKS 815 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV---DSKKLNRR 880 FKV D +I + L+ IK VG I++A + F + ++F RV D + LN++ Sbjct: 816 YGSFKVADKKIIFGLSGIKNVGLNLIDSIVKARDEGGAFTNFKNFLERVEDYDPRALNKK 875 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 +ESL+ AGA D GY+R L+ + K N+ I + Sbjct: 876 GIESLIKAGAFDSLGYTRSSLMAIFEKAINTVHDNNKINVTGQINLLDMASAKEDTDIDM 935 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEES-----VATIRGN 993 V+ + E+ VLGFY S HPL L + Y E +A++ G Sbjct: 936 PNIDEYPKKVKLKLEKEVLGFYISEHPLSERSLALSNIVNFTTNYREELGENRLASLDGK 995 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +A ++ +K++ T+K + + + + E FP Sbjct: 996 FVTMAGIINNKKELTTKKRDLMAFASLEDMYGNIEMVIFP 1035 >gi|302672122|ref|YP_003832082.1| DNA polymerase III E DnaE1 [Butyrivibrio proteoclasticus B316] gi|302396595|gb|ADL35500.1| DNA polymerase III E DnaE1 [Butyrivibrio proteoclasticus B316] Length = 1179 Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust. Identities = 386/1081 (35%), Positives = 570/1081 (52%), Gaps = 78/1081 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + + ++ A AITD ++ ++F + AGI P Sbjct: 2 AFTHLHVHTEYSLLDGSNKIKEYVKRLGELGMTAGAITDHGVMYGVIDFYKACRDAGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + + + +VLL GY L +VSR + + Sbjct: 62 VIGCEVYV--APGSRFEKETAVSDDRYYHLVLLAENNVGYANLSHIVSRGFT-EGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ + L++ EG+I L+ +G I R + A++ + +FG ++ LQ Sbjct: 119 RVDMELLEQY-HEGIIALSACLAGEIPRNIVKGTPDKAKEAAIRLDNIFGHGNFFLELQD 177 Query: 189 HRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H G R +A + EL PLVATN+ + +D EAHD+L+ + VS +DR Sbjct: 178 H-GIPEQRMVNASLMALSQELDIPLVATNDCHYTYADDAEAHDLLLCIQTGKXVSDEDRM 236 Query: 247 RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R +Y+K+ EM S+F EAL+NT +IA RC ++ LP F E D Sbjct: 237 RYEGGQYYVKSEEEMRSLFPYAQEALDNTQKIADRCHVEIEFGVTKLPHFEVPEGYD--- 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIVADF 363 L + GL R Y D + +LD+EL VI RM + YFLIV D+ Sbjct: 294 -SWTYLNKLCLDGLHER---------YPDDDGTLKDKLDYELGVIKRMGYVDYFLIVWDY 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I + ++N I VGPGRGS AGS+ +Y + IT+IDP+++ LLFERFLNP+R+SMPD D+DF Sbjct: 344 INYCRENGIAVGPGRGSAAGSIVSYCMHITNIDPIKYDLLFERFLNPERVSMPDIDVDFE 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR +VI YV KYG ++V QIITFG+L AK +RDV R + +PYS D + K+IP + Sbjct: 404 YERRQDVIDYVTEKYGADKVVQIITFGTLAAKGVIRDVARVMDLPYSFGDTISKMIPTEL 463 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ + R +D +V +L+++ +KLEGL RH S HAAG+VI P LV Sbjct: 464 NITLD-KALEMNPELRSQYESDETVHKLIDMCKKLEGLPRHTSIHAAGVVICSAPAEDLV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVK------ 595 P+ R ++ TQF M IE+ GL+K DFLGL+TLT+++ + +F A R G K Sbjct: 523 PLSRSAEGNV-TTQFTMTTIEELGLLKMDFLGLRTLTVIKDATNF-ANRSLGAKPGDANY 580 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +++ I ++D + + G+FQLES GM+ ++ ++P +EDIIA +SLYRPGP+ Sbjct: 581 INIDEIDYNDPAVLASIGSGRCDGVFQLESGGMQSFMKELRPQSLEDIIAGISLYRPGPM 640 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I Y KN I P ++P+LK T G I+YQEQVMQI Q L GY+L AD++RR Sbjct: 641 DFIPKYIAGKNDAGAITYQTPELEPILKPTYGCIVYQEQVMQIVQQLGGYTLGRADLVRR 700 Query: 716 AMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AM KK + M+ ++ F++ G + GIS I I++ + FA Y FNKSHAA Sbjct: 701 AMSKKKQHVMEVERANFVNGNPEENVPGCASKGISPEIGNAIYDSMMDFAKYAFNKSHAA 760 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 YAV++ QTAW+K +YPVEF+AA MT +DN K+ + R NI ++PP +N Sbjct: 761 CYAVVALQTAWLKYYYPVEFMAALMTSVIDNPGKVSGYIMSCRNMNIALLPPDINEGFDG 820 Query: 828 FKV-----GDN-----------------RIYYSLAAIKGVG-TTTARHIMEASADKPFDS 864 F V GDN I Y+L AIKGVG A + E F + Sbjct: 821 FSVTEIDAGDNDKPIPGAVVTTAPGRKKAIRYALTAIKGVGRPVIASIVQERQLHGKFKN 880 Query: 865 LEDFCSRVDSK--KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 L DF SR+ + +N+R +E+ + AGA +CF +R Q + +I +N Sbjct: 881 LNDFLSRMQGRANDVNKRAVENFIKAGAFECFEGTRKQHMTVYAHIMDQLHNSNRNSMAG 940 Query: 923 HENI--FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 + FA E+ +I L + E E+ VLG Y SGHPL+ Y I +K Sbjct: 941 QMTLFDFAGEEEKKMYEIPLPDVGEFPRELLLEFEKEVLGIYVSGHPLEEYIGIWKKKIT 1000 Query: 981 KGY-------EESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E V +R N + + ++ K+ K T+ + ++T + E F Sbjct: 1001 NTTTDFYLDDETGVPVVRDNATVTIGGIISDKKVKYTKTDQIMAFLTVEDLVGSIEVIVF 1060 Query: 1033 P 1033 P Sbjct: 1061 P 1061 >gi|160915308|ref|ZP_02077521.1| hypothetical protein EUBDOL_01317 [Eubacterium dolichum DSM 3991] gi|158433107|gb|EDP11396.1| hypothetical protein EUBDOL_01317 [Eubacterium dolichum DSM 3991] Length = 1027 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 355/1027 (34%), Positives = 587/1027 (57%), Gaps = 63/1027 (6%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL V S+Y+LL+ L++ I+ ++A+TD N + A+ F I+PI Sbjct: 3 VHLHVRSAYTLLQSTLTIPKIIACTKQHGYQSVALTDKNVMHGAMAFYHACIKENIKPIF 62 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G +++ DN + +LL +GY L++L + LL+ G+ + ++ Sbjct: 63 GMEVEA-AYDNDSL------------GFILLAKNDQGYVDLMKLST---LLNTGEHAKQV 106 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-R 190 L + T+ ++LT G ++ + K L + F D YV++ R+ Sbjct: 107 SFEELC-LYTKDCVVLTNGDQNIMETYLVKEEIGLLSKLLQLCTQSFTD-FYVSIARNDS 164 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 G + + ++ L ++ VA + F E + E++ L A+ H V +P Sbjct: 165 GLLKSKNPRLKSLCKEMKIRTVALSRIYFQDEAEEESYKTLCAI-HQQVSVDDRMLNFSP 223 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 Y ++++EM ++ + E L + EIA +C+ +Q ILP+F K E Sbjct: 224 KRYYRSQAEMAQLYDE--EDLLASEEIAAKCNVKMQFPQAILPKFKNK----YGVSSEEF 277 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LRN GL R+ AI K Y +QRL++EL+VI M ++ YFLIV DFI++AK Sbjct: 278 LRNLCHKGLAKRMHFQAIPKVY-----QQRLEYELDVIINMHYADYFLIVWDFIRFAKSQ 332 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 NI +GPGRGS AGS+ +Y L IT +DPL+++LLFERFLNP+R+SMPD D DF +RRDEV Sbjct: 333 NIYIGPGRGSAAGSLVSYCLGITHVDPLQYNLLFERFLNPERVSMPDIDTDFPDNRRDEV 392 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I YV+ YG R + IITF +L AK LRDVGRA+ + ++D LCK++P+ P V+L Sbjct: 393 IEYVKGLYGSHRASHIITFNTLAAKQVLRDVGRAMNISLREIDSLCKMVPSMP--KVTLD 450 Query: 491 AIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 ++S RF++ + +L IS++LEGL RHAS HAAGIV+ + +S + P+ DV Sbjct: 451 YTYENSARFKQKINSSQLYRKLFAISKQLEGLPRHASLHAAGIVLSNDAISSVCPLI-DV 509 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608 + + TQF M ++E+ GLIK DFLGL+ LT++ + ++ + + K+D+ IP +D +T Sbjct: 510 DAGISATQFTMDYMEELGLIKMDFLGLRNLTIIDEVVNLINRDHENKLDIMHIPLNDKKT 569 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + L+ T+G+FQLES GM+ L M+P C EDI+A V+L+RPGP++NI Y R+ Sbjct: 570 FALIQAVDTVGVFQLESEGMKNLLRKMKPTCFEDIVATVALFRPGPMENIPEYLERRANP 629 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 +K+ IHPL+ P+L+ T G++IYQEQ+MQ+AQ+++G+SL +AD LR+A+ KK EE+ + Sbjct: 630 QKVDYIHPLLKPILENTYGIMIYQEQIMQVAQVMAGFSLGKADNLRKAISKKKGEELARL 689 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 K FI GA + G + +A++++EL+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F Sbjct: 690 KNDFIQGAKQKGFEEQLAIHVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFF 749 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 + + + + K ++ +A++ I I+ PSVN +++ + + L IKG+G Sbjct: 750 VSLLNSMIGSESKTSEYIFEAKKRGISILLPSVNFSGNGYRIEKRSLRFPLNGIKGIGNA 809 Query: 849 TARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 I+ E ++ F DF +R+ + + ++ +E L++AGALD F +R ++ +L++ Sbjct: 810 VCSQILKERNSHGKFRDYFDFVARMSAIHIGKKTMEILIYAGALDEFNINRSSMIATLED 869 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +Y + V+ + + +FA E + I+++ E+ S+ E E+ LGFY S HP Sbjct: 870 ALRYGELVKIEDAD--QILFAFELVSKPAIISVK----EHRSMLVEKEKECLGFYLSSHP 923 Query: 968 LDVYK--------PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW-V 1018 +++ + P++ +GY +R M+ +Q +T+ G+ + + V Sbjct: 924 IELLRKRMNAQLAPLIALKAQRGY-----------VRFLCMIERVKQHRTKNGALMAFAV 972 Query: 1019 TFSEPAK 1025 + E +K Sbjct: 973 SADETSK 979 >gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501] gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata HTCC2501] Length = 1453 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 376/1079 (34%), Positives = 585/1079 (54%), Gaps = 80/1079 (7%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--- 58 Q LE P F HL HS +S+L+ + + +++ A + PA+A+TD N+ A F Sbjct: 252 VQALEGVP-FAHLHNHSQFSVLQSTMGIKDLVAAAAEYRMPAVALTDHANMMGAFHFVRE 310 Query: 59 --------SQKACAAG---IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106 +++ A+G + PIIGC+ + + ++N + + G +V+L Sbjct: 311 VKAHNSNLTEEDRASGKRDLIPIIGCEFFVCEDRNNKSVKDYGY-------QVVMLAKNK 363 Query: 107 EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166 +GY L ++ S Y +G V + E E +I+LTG G + + Sbjct: 364 KGYHNLAKMSSIAYT--EGFYYVPRIDREVVERYKEDVIVLTGNLYGEVPSKVLNQGEKQ 421 Query: 167 AEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDY 225 AE+ LL +K+ FG+ LYV + RH D R +Q +V LA HE+ LVATNN+ + +ED Sbjct: 422 AEEALLWWKEQFGEDLYVEVMRHGQEDEDRANQSLVALAKKHEVSLVATNNTYYRRKEDA 481 Query: 226 EAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIA 278 EAHD+L+ V +T + + R ++Y K+ EM +F DLPE++++ I Sbjct: 482 EAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSPEEMKELFRDLPESIQSIEGII 541 Query: 279 RRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330 + +LP+F E D ++ E LR+ G E R Sbjct: 542 EKIEPFDLARDVLLPKFEIPEEFRVAEDAADGGKRGENAYLRHITFQGAEKRY------- 594 Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390 G + R+RLDFEL+ I + GYFLIV DFI+ A+ + VGPGRGS AGSV AY L Sbjct: 595 GEITEAIRERLDFELSTIENSGYPGYFLIVEDFIREARNMGVSVGPGRGSAAGSVVAYCL 654 Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450 IT+IDPL++ LLFERFLNPDR+SMPD DIDF + R V+ YV +KYG +VAQIIT+G Sbjct: 655 GITNIDPLKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIDKYGANQVAQIITYG 714 Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVSLQAIAD-DSRFREARLADPSV 508 ++ AK+++RD R L +P S+ DR+ KLIPN + Q A+ +FR LA V Sbjct: 715 TMAAKSSIRDTARVLDLPLSEADRIAKLIPNMSKLAKIFGQDEAELKKKFRSDDLA--KV 772 Query: 509 DRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 + LL +S+ LEG R+ HA G++I ++ VP+ SDL V Sbjct: 773 NELLNLSEGSDLEAQTVNMARVLEGSLRNTGIHACGVIITPDDITNFVPVATAKDSDLYV 832 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTT 614 TQF+ +E AGL+K DFLGLKTLTL++ ++ + A+ G+ + P DD ETY L Sbjct: 833 TQFDNSVVENAGLLKMDFLGLKTLTLIKDTVKIVKARHGIDLIPDDFPLDDAETYELFQR 892 Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674 T+GIFQ ES GM++ L+ ++P +D+IA+ +LYRPGP++ I + RK+G+E+I Sbjct: 893 GETVGIFQYESPGMQKHLKDLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGQEEITYD 952 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 P ++ L+ET G+ +YQEQVM ++Q L+G+S EADVLR+AMGKKI + K K +F+ Sbjct: 953 LPEMEEYLQETYGITVYQEQVMLLSQKLAGFSKGEADVLRKAMGKKIFALLQKLKPKFLD 1012 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 G NG + + I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ Sbjct: 1013 GGEANGHPRDVLEKIWKDWEAFASYAFNKSHSTCYAYIAYQTAYLKAHYPAEYMAAVLSN 1072 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI 853 M++++++ F ++ R+ + ++ P VN F V DN++ + + AIKGVG + I Sbjct: 1073 NMNDIKQVTFFMEECRRMGLDVLGPDVNESYYKFAVNKDNQVRFGMGAIKGVGRSAVETI 1132 Query: 854 MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQS------- 904 +E A+ P+ S+ D R+D + N++ E+L AG D G + R Q Sbjct: 1133 VENRKANGPYQSIFDLAKRIDLRAANKKAFENLALAGGFDSLGNAHRAQYFDCGTDGVSF 1192 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L+ + ++ +++ + ++F + + + + E+ V+G Y S Sbjct: 1193 LEKVIRFGARFQESENSSQVSLFGGSSEVQIAEPEIPPCEEWGTMETLKREKEVVGIYIS 1252 Query: 965 GHPLDVYKPILRKM-GIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 GHPLD +K ++ + Y ++ + LA ++ Q + ++ G GW F+ Sbjct: 1253 GHPLDDFKTEIQAFCNTEIYALNDLSPYLNRELSLAGVITDVQHRVSKNGK--GWAIFT 1309 >gi|210614801|ref|ZP_03290330.1| hypothetical protein CLONEX_02544 [Clostridium nexile DSM 1787] gi|210150570|gb|EEA81579.1| hypothetical protein CLONEX_02544 [Clostridium nexile DSM 1787] Length = 1156 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 382/1053 (36%), Positives = 597/1053 (56%), Gaps = 52/1053 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD +F ++F + A AAGI+P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + ++ +VLL +GY+ L ++VSR ++ + Sbjct: 62 ILGCEVYVAPGSRFDKSSGASED--RYYHLVLLAENQKGYENLTKIVSRGFV-EGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ + L+E EG+I L+ +G + + + A+ ++K+FG ++ LQ Sbjct: 119 RVDMELLEEF-HEGIIALSACLAGEVQKNLHRGMYEEAKAAAFRYEKIFGKGNFFLELQD 177 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ Q+++L+ + LVATN+ + ED + HD+L+ + ++ +DR R Sbjct: 178 HGMQEQANVNQQLLRLSQDTGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLADEDRMR 237 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ +M ++F +A+ENT +IA RC ++ LP++ D Sbjct: 238 YEGGQYYVKSEEQMKALFPYALQAIENTQKIADRCHVEIEFGVTKLPKY-----DVPDGY 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E NK L + K Y ++ R+RL++ELNVI M + YFLIV DFI Sbjct: 293 TSWEYLNK--------LCYEGLEKNYENPKKELRERLEYELNVIKTMGYVDYFLIVWDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A+ ++I VGPGRGS AGS+ +Y L IT+IDP+++ LLFERFLNP+R+SMPD DIDFC Sbjct: 345 KYARDHDIMVGPGRGSAAGSIVSYCLGITNIDPIKYQLLFERFLNPERVSMPDIDIDFCF 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV KYG +RV QI+TFG++ A+ +RDVGR + +PY+ VD + K+IP + Sbjct: 405 ERRQEVIDYVVRKYGSDRVVQIVTFGTMAARGVIRDVGRVMNLPYAFVDSISKMIPTELN 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ +S R+ D V L+++S++LEGL RH S HAAG+VI + + + VP Sbjct: 465 MTLD-RALTMNSELRDLYENDEQVKNLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVP 523 Query: 545 MYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLI 601 + + SD V TQF M +E+ GL+K DFLGL+TLT++Q ++ LA++ G +D+ I Sbjct: 524 L--SLGSDGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVR-LAEKSTGKTIDIDHI 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 +DD + T T GIFQLES+GM+ ++ ++P +EDIIA +SLYRPGP+D I Y Sbjct: 581 DYDDKAVLDSIGTGRTDGIFQLESAGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPQY 640 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 KN I P + P+L+ T G I+YQEQVMQI + L+GY+L +D++RRAM KK Sbjct: 641 IKGKNDVNAITYDCPQLKPILEPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKK 700 Query: 722 KEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 + M K+++ F + G NGIS+ +A I++ + FA Y FNKSHAAAYAV++ Sbjct: 701 GDVMQKERQNFVYGNEAEGVPGCIANGISEQVANKIYDEMIDFAKYAFNKSHAAAYAVVA 760 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K +YPVEF+AA MT +DN K+ ++ RQ I+I+PP +N F V + Sbjct: 761 YQTAYLKYYYPVEFMAALMTSVIDNPGKVAEYIYSCRQMGIEILPPDINKGEGKFSVDNG 820 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y LAAIK +G I+ E + F +L+DF R+ K++N+R +ES + +GA D Sbjct: 821 NIRYGLAAIKSIGKPVIEAIIAEREKNGLFKNLKDFIERLSGKEVNKRTIESFIKSGAFD 880 Query: 893 CFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 +R Q + + LD + + ++ + + + + +K F I L Sbjct: 881 SLHGTRKQFMVIYVKILDQVNQERKYSMTGQMSLFDIVDEEQKKEFD--IQLPNVGEYEK 938 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVAT-IR-GNNIRLAAM 1000 E+ VLG Y SGHP+ Y+ RK M + EES T +R G + + Sbjct: 939 ETMLAFEKEVLGIYISGHPMQEYEEKWRKNISATTMDFQYDEESGHTKVREGAKEIIGGI 998 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +K K T+ + ++T + E FP Sbjct: 999 ITNKTIKHTKTNKTMAFLTIEDLVGTVEVVVFP 1031 >gi|227497604|ref|ZP_03927825.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226832930|gb|EEH65313.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 1197 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 370/1081 (34%), Positives = 588/1081 (54%), Gaps = 70/1081 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL VH+ YS+L+GA + + + + QPA+AITD +F A EF + A AG Sbjct: 12 KKDDFVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEFYEAARKAG 71 Query: 67 IQPIIGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110 I+PI+G + + + Q + ++ +G + + LL EG Sbjct: 72 IKPIVGVEAYMTPGTSRFDKTRVFWGEESQRSDDVSARG-----SYTHMTLLSRNDEGLH 126 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L+ L S L Q +S R+ LQ + GLI +G S I + A + Sbjct: 127 NLMRLDSYASLEGQWGKSPRMDRELLQRYAS-GLIGTSGCPSSEIQTRLRLGQWEEALRC 185 Query: 171 LLTFKKLFGDRL-YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228 + +FG YV L H R ++ +++LA PL+ATN+S ++ ED Sbjct: 186 AGELQDIFGKEFFYVELMDHGLEIEQRVTKDLLRLAKEIGAPLLATNDSHYVRPEDRTIQ 245 Query: 229 DVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF---I 284 D ++ + +V+S DR + D +YL+ EM +F ++P+A +NT+ +A +C Sbjct: 246 DAMLCINSGSVLSDPDRFKFDGDTYYLRPGREMRELFREMPQACDNTLLVAEQCDVHFAT 305 Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + A +P F E + + E+ + G++ R G +D R++ ++E Sbjct: 306 VDEGASFMPAFPVPEGETM----ESWFIKECWKGMDKRFG------GNIPEDCRKQAEYE 355 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 + VI +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PL+ L+F Sbjct: 356 IGVIVQMGFPGYFLVVADYINWAKNHGIRVGPGRGSGAGSMVAYAMGITELNPLQHGLIF 415 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DF + RR+EVI YV+ KYG ++++Q++T+G ++AK +L+D R Sbjct: 416 ERFLNPERISMPDIDVDFDERRREEVIDYVKAKYGADKISQVVTYGVIKAKQSLKDSSRV 475 Query: 465 LQMPYSQVDRLCKLIPND-PAHPVSLQAI--ADDSRFREA------RLADPSVDRLLEIS 515 + PY+ DRL K +P ++++ I +D R+ EA DP +++E++ Sbjct: 476 MGYPYAVGDRLTKAMPPTIMGKDITIKGIFNPEDERYGEAAEFRALHAEDPDAQKIVELA 535 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 Q LEG+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLG Sbjct: 536 QGLEGMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAYITQFDYPTCEHLGLLKMDFLG 595 Query: 576 LKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L+ LT++ +L+ + G + +D+ + DD ETY LL+ TLG+FQL+ GMR L Sbjct: 596 LRNLTVISDALENIVANGKEPLDIDHVALDDAETYQLLSRGETLGVFQLDGGGMRTLLRL 655 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGV 688 M+PD EDI A+ +LYRPGP+ ++ Y RKNG+++I IHP ++P+L T G+ Sbjct: 656 MKPDNFEDISAVGALYRPGPMGAESHTNYALRKNGQQEITPIHPELKEALEPILGNTYGL 715 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQVM+IA L+G+++ +AD LR+AMGKK + + K F +G NG SK Sbjct: 716 IVYQEQVMKIATDLAGFTMGKADALRKAMGKKKMDILAKMFVEFEAGMVANGFSKESVKT 775 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 +++++ FA Y FNK+H+AAY V+SY TA++KTHYP E++AA +T + DN +K+ + + Sbjct: 776 LWDVVVPFAKYAFNKAHSAAYGVVSYWTAYLKTHYPTEYMAALLTSQKDNKDKLALYLGE 835 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867 R I+++PP VN F + I + L AI+ VG I+ A ++ F S ED Sbjct: 836 CRHMGIKVLPPDVNASRAQFSAVGSDIRFGLGAIRNVGANVVDGIVAAREEQGDFTSFED 895 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +V + N+R ++SL+ AGA D G SR L ++ V++N ++F Sbjct: 896 FLDKVPAVVCNKRTIDSLIKAGAFDSLGKSRRSLQACHEDFVDEIIGVKRNEAVGQFDLF 955 Query: 928 AHEKGT--FSDKITLEKFSVENSSV----------RFENEQRVLGFYFSGHPLDVYKPIL 975 A G S+ V +S V + E+ +LG Y S HPL + +L Sbjct: 956 ASLGGGDQASEDPAFGSGPVFSSEVPDLPEWDKKDKLAFERDMLGLYVSDHPLLGLEGML 1015 Query: 976 RKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 K+ I E+ G + +A ++ S Q+K T++G+ + EA FF Sbjct: 1016 SKLADVEIADLLENEERPDGAMVTVAGLITSLQRKTTKQGNLWAIAQVEDLGGTVEALFF 1075 Query: 1033 P 1033 P Sbjct: 1076 P 1076 >gi|301330018|ref|ZP_07222702.1| DNA polymerase III, alpha subunit [Escherichia coli MS 78-1] gi|300843929|gb|EFK71689.1| DNA polymerase III, alpha subunit [Escherichia coli MS 78-1] Length = 742 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 328/759 (43%), Positives = 476/759 (62%), Gaps = 34/759 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G D ++Q Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGA--DFNVQC 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +L + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 59 DLLGDE--------LTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R R + Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ LP+F + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDM-----STEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP ++ +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNK Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNK 742 >gi|326335784|ref|ZP_08201964.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692023|gb|EGD33982.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 1485 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 373/1081 (34%), Positives = 578/1081 (53%), Gaps = 85/1081 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--- 61 L +S F HL HS +S+L+ S+ +++ A + PA+A+TD N+ A F+++ Sbjct: 250 LLQSAPFAHLHNHSQHSVLQSTASIADLVTAAAKENMPAVALTDHGNMMGAFHFTKEVAK 309 Query: 62 ------------------ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103 A I+PIIGC+ I +++L T + +VLL Sbjct: 310 HNKEAKAKNAKLEEEGKPATHTLIKPIIGCEFYI-CENHLDKTKKDNGY-----QVVLLA 363 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 +GYQ LI++ S Y +G V + E + LI+L+G G I Sbjct: 364 KNKDGYQNLIKMASIAYT--EGFYYVPRIDKGIVEQYKDQLIVLSGNLQGEIPSKILNLG 421 Query: 164 SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSE 222 ++ AE+ LL +K+ F + Y+ L RH + R + V ++LA H + LVATNN+ ++S Sbjct: 422 NRQAEEALLWWKEHFQEDFYIELMRHGQENENRANAVLIELAKKHGVKLVATNNTYYISP 481 Query: 223 EDYEAHDVLMAVA----HSTVVSQKDRPR---VTPDHYLKNRSEMVSIFSDLPEALENTV 275 +D AHD+L+ V +T + Q R ++Y K+ +M +F D+PEA+ + Sbjct: 482 QDANAHDILLCVKDGEKQATTIGQGRGFRNGLPNEEYYFKSSQQMKELFKDIPEAILSIK 541 Query: 276 EIARRCSFILQVHAPILPRF-----IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIA 329 EI + + +LP+F + E D K+ EN+ LR+ G + R + Sbjct: 542 EIIDKITPYELARNILLPKFSIPKEFQMEGDPTGKKGENKYLRHLTYLGAKKRYKE---- 597 Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 + R+RLDFEL++I + + GYFLIV DFI A+ + VGPGRGS AGS AY Sbjct: 598 ---LTNEVRERLDFELSIIEKTGYPGYFLIVEDFITAARNMGVSVGPGRGSAAGSAVAYC 654 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L IT+IDP+++ LLFERFLNPDR+SMPD DIDF D R V+ YV KYG +VAQI T+ Sbjct: 655 LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFEDDGRGRVLDYVIGKYGANQVAQIATY 714 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLAD-P 506 G++ AK+++RD R L +P + D++ KLIPN +SL+ I D +E +D P Sbjct: 715 GTMAAKSSIRDTARVLDLPLKEADQIAKLIPN-----ISLKKIFSLTDEELKEKVGSDLP 769 Query: 507 SVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 +D+L +I++ LEG R+ HA G++I ++ VP+ SDL Sbjct: 770 KIDKLKKIAEGHDLSAKTVQQACILEGSVRNTGIHACGVIITPDDITNFVPVMLAKDSDL 829 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612 VTQF+ +E AGL+K DFLGLKTLT+L+ ++ + +R G ++D+ IP DD TY L Sbjct: 830 FVTQFDNSVVESAGLLKMDFLGLKTLTILKDAVSLIQKRHGFELDIDHIPLDDKPTYALF 889 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 T+GIFQ ES GM++ + ++P D+IA+ +LYRPGP+D I + +RK G E I Sbjct: 890 QRGETIGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPMDYIPSFIHRKQGIEPIT 949 Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732 ++ LK+T G+ +YQEQVM ++Q L+G++ EAD LR+AMGKK+K+ + + K +F Sbjct: 950 YDLADMEEYLKDTYGITVYQEQVMLLSQKLAGFTKGEADKLRKAMGKKLKDVLAEMKPKF 1009 Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792 I G K G + I++ FA Y FNKSH+ YA I+YQTA++K +YP EF+AA + Sbjct: 1010 IEGGGKKGHPAEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMAAVL 1069 Query: 793 TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTAR 851 + M++++ I F + + I+++ P VN F V + I + + A+KG+G Sbjct: 1070 SNNMNDIKSISFFLSECHRMGIKVLSPDVNESEYKFTVNKEGAIRFGMGAVKGLGKAAVD 1129 Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS------ 904 I+E + S+ D R+D K N++ ESL AG D F R Q Sbjct: 1130 TIVETRKSGAYQSIFDMVKRIDLKSANKKAFESLALAGGFDSFPEVHRAQFFHQEPSENM 1189 Query: 905 --LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 L+ I +Y +++ + ++F T + + + + E+ V+G Y Sbjct: 1190 VFLEKILRYGAKAQESAKSIQLSLFGDSPETQIPEPKMPYTEEWSPMEKLRREKEVVGIY 1249 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 SGHPLD++K L+ + K E + G N + +++K + KT K + GW F Sbjct: 1250 ISGHPLDIFKYQLQYLCNKEVIELSGGLEGLENQVVRFGGIITKTEHKTSKTGK-GWGIF 1308 Query: 1021 S 1021 + Sbjct: 1309 T 1309 >gi|238923437|ref|YP_002936953.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] gi|238875112|gb|ACR74819.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] Length = 1181 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 372/1061 (35%), Positives = 580/1061 (54%), Gaps = 59/1061 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL H+ YSLL+G+ + + ++ + AITD N++ +EF + A A I P Sbjct: 17 SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 76 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +IGC++ + + T+ G + ++LL GY L+++VS + + Sbjct: 77 VIGCEVYVAPNSRFDRETSHGDDRYY---HLILLAENNTGYANLMKIVS-IGFTEGYYYR 132 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDR----AFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L+ EGLI L+ +G I R F+ + ++A K ++ FG D + Sbjct: 133 PRVDFETLERY-HEGLICLSACLAGEIPRYIVRGFYDEAKEIARK----YQDCFGKDNFF 187 Query: 184 VNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQ H G D + Q+++++ E+ LV TN+ + E D EAHDVL+ + VS Sbjct: 188 LELQDH-GIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVS 246 Query: 242 QKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +DR R + +K+ +M ++F EA+ENT +IA RC+ L+ +P++ E Sbjct: 247 DEDRMRYDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEG 306 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR----LDFELNVIARMKFSGY 356 D + EL K + I G ++ D ++ +D+EL +I M F Y Sbjct: 307 YDSAEAFLTELCEKG-------FREKYIGCGEYSADELKKIHADMDYELGIIKTMGFIEY 359 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 LIV D+I W + ++ VGPGRGS AGS Y ITDIDP++++LLFERFLNP+R+SMP Sbjct: 360 ILIVWDYINWCRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMP 419 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF R I YVQ KYGH+ V QI+TFG++ A+ ++ VG+AL PY++ DRL Sbjct: 420 DIDVDFEYAERYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLA 479 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 K++P + + +A+ + F+ +D V +++++++LEGL H S HAAG+VI Sbjct: 480 KMVPQELNITID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYP 538 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVK 595 S VP+ R P ++NM +E+ GL+K DFLGL+TLT+L+ S+ + A RG+ Sbjct: 539 GVASDYVPLGR-ANDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGID 597 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ I F+D T + T T G+FQLES+GM+ ++ + P EDI+A +SLYRPGP+ Sbjct: 598 VDIDHIDFNDKGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPM 657 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I Y KN ++I + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RR Sbjct: 658 DFIPNYIKGKNNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRR 717 Query: 716 AMGKKIKEEMDKQK--------ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AM KK + +D ++ ER I G NGI + A +I++ + FA Y FNKSHAA Sbjct: 718 AMSKKKQYVIDAERQSFVYGDEERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAA 777 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA IS QTAW+K +YPVEF+AA MT +DN K ++ R I+++PP +N + Sbjct: 778 AYAKISVQTAWLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGE 837 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKL-NRRVLESL 885 F + + Y + AIK +G I+E + + +L DF R K+L N+R +E+L Sbjct: 838 FTAEGDHVRYGMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENL 897 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TL 940 + AGA D +R Q+ +I Q +K+ ++F ++ +F K + Sbjct: 898 IKAGACDSLDGTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNV 957 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNN 994 ++ E + E+ VLG Y SGHPL+ Y L+K + EES A +N Sbjct: 958 GEYDAEEA---LAYEKEVLGIYLSGHPLEKYAATLKKNITANAIDFVLEEESGAVKIEDN 1014 Query: 995 --IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+ +K K T+ + ++T + E FP Sbjct: 1015 AHVVIGGMIATKTIKFTKYNQAMAFITIEDLTGTVEVIIFP 1055 >gi|269956096|ref|YP_003325885.1| DNA polymerase III subunit alpha [Xylanimonas cellulosilytica DSM 15894] gi|269304777|gb|ACZ30327.1| DNA polymerase III, alpha subunit [Xylanimonas cellulosilytica DSM 15894] Length = 1181 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 377/1084 (34%), Positives = 570/1084 (52%), Gaps = 92/1084 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS +S+L+GA + ++D++AA Q A+AITD LF A EF + A G++PI Sbjct: 7 FVHLHVHSEFSMLDGAARIGELVDEVAAQGQKAVAITDHGYLFGAFEFWKTATNKGVKPI 66 Query: 71 IGCQ---------LDIDMQDNLKMTNQGKTPFPTVPS-------IVLLVSTAEGYQRLIE 114 IG + D Q + G+ P P S + L G L Sbjct: 67 IGVEAYVTPGTSRFDQKRQLYGQPLPDGR-PDPDDVSARGAYTHMTLWARDNVGMHNLFR 125 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 S L Q + R+ LQ + GL TG SG I + A + Sbjct: 126 ASSLASLEGQMGKWPRMDRDLLQRY-SPGLTATTGCPSGEIQTRLRLGQWEEALRAAGEL 184 Query: 175 KKLFG-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + LFG + YV L H R ++ +++LA P+VATN+ ++ E D + + L+ Sbjct: 185 QDLFGREHFYVELMDHGLEIETRVTKDLLRLAQEIGAPIVATNDLHYVKEADATSQEALL 244 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 A+ + + +R + +Y+K+ +EM +F +LPEA+ NT+ IA C A Sbjct: 245 AINSGSTLDDPNRFKFDGTGYYVKSSAEMARLFRELPEAISNTLLIAESCEVSFDTQANY 304 Query: 292 LPRFI----EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 +P F E E KE EN LR + G+ D R R D+E+ V Sbjct: 305 MPHFPVPDGEDEISWFVKEVENGLRRRYPDGI--------------PDDVRTRADYEVGV 350 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M F GYFLIVADFI W+K+N I VGPGRGS AGS+ AYA+ IT++DP+ + LLFERF Sbjct: 351 IIQMGFPGYFLIVADFINWSKRNGIRVGPGRGSAAGSMVAYAMGITELDPIPYDLLFERF 410 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPD D+DF + RR E IRYV KYG +RVAQI+T+G+++AK A++D R L Sbjct: 411 LNPERVSMPDVDVDFDERRRGEAIRYVTEKYGDDRVAQIVTYGTIKAKQAIKDSARLLGQ 470 Query: 468 PYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514 P++ ++L K +P DP HP +A + FR+ DP R++E+ Sbjct: 471 PFAMGEKLTKAMPPAVMGKDIPLSGIFDPKHPRYAEA----AEFRQVHDVDPEAQRVVEL 526 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ +EGL R HAAG+++ PL ++P+ + + +TQF+ E GLIK DFL Sbjct: 527 ARGIEGLKRQWGVHAAGVIMSSEPLIDIIPIMKRPQDGAVITQFDYPTSEGLGLIKMDFL 586 Query: 575 GLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT+L +L+ + G + V++ + DD TY LL TLG+FQL+ MR L Sbjct: 587 GLRNLTILDDALENIVGNGKEPVEIEKVGLDDPTTYELLARGDTLGVFQLDGGPMRALLR 646 Query: 634 GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQG 687 M+PD ED+ A+++LYRPGP +++ Y RKNG ++ IHP L +P+ L T G Sbjct: 647 QMRPDNFEDVSAVIALYRPGPMGMNSHTNYALRKNGLQQNTPIHPELAEPLAEVLDTTYG 706 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQV + AQ+L+GYSL +AD+LRRAMGKK KE +DK+ F +G + G S Sbjct: 707 LIVYQEQVQRAAQVLAGYSLGQADLLRRAMGKKKKEILDKEFVPFQAGMRERGYSDAAIQ 766 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++++L FA Y FNK+H+A Y ++SY TA++K +YP E++AA + ++ +K+ + Sbjct: 767 AVWDVLVPFAGYAFNKAHSAGYGLVSYWTAYLKANYPAEYMAALLQSTREDKDKLALYLN 826 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866 + R+ I ++PP VN F + + L+ ++ VG I+ +K + S Sbjct: 827 ECRRMGITVLPPDVNVSAAKFTAVGKDVRFGLSGVRNVGANVVDAIVRTREEKGAYTSFT 886 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNK 922 DF +V + N+R +ESL+ AGA D SR LL Q++D++ + R Sbjct: 887 DFLDKVPAVVCNKRTIESLIKAGAFDSLEASRRALLVVHEQAVDSV------ITVKRKEA 940 Query: 923 HENIFAHEKGTFSDKITLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 D FSV+ + + E+ +LG Y S HPL + +L Sbjct: 941 EGQFDLFAGFGGDDDDAGMSFSVDVPDLPDWDKKQKLAFEREMLGLYVSDHPLSGLEHVL 1000 Query: 976 RKMGIKGYEESVATIRGNNIR-------LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + S+AT+ G+ R +A ++ S Q+K ++ G+ VT + E Sbjct: 1001 ----TRAADTSIATLMGDEGRPENSTVTVAGLITSLQRKMSKNGNPWAAVTVEDLEGSVE 1056 Query: 1029 ANFF 1032 FF Sbjct: 1057 VMFF 1060 >gi|291537379|emb|CBL10491.1| DNA polymerase III catalytic subunit, DnaE type [Roseburia intestinalis M50/1] Length = 1156 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 370/1052 (35%), Positives = 594/1052 (56%), Gaps = 50/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F + A AAGI+P Sbjct: 2 SFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAAGIKP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+GC++ + + + G + +VLL +GYQ L+++VS+ ++ + Sbjct: 62 ILGCEVYVAPGSRFDRELSHGDDRYY---HLVLLAENNQGYQNLMKIVSKGFV-EGYYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 R+ + L E EG+I L+ +G + R + A++ ++K FG ++ LQ Sbjct: 118 PRVDMEVL-ETYHEGIIALSACLAGEVQRYLVRGLYEEAKETACKYEKCFGKGNFFLELQ 176 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H + + +++++ + LVATN+ + ED E HD+L+ + +S ++R Sbjct: 177 DHGIPEQKTVNAGLMRMSQETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSDENRM 236 Query: 247 RVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R Y +K+ EM ++F +A+ENT +IA RC+ ++ LP F E D Sbjct: 237 RYEGGQYFVKSEEEMRALFPYAAQAIENTQKIADRCNVEIEFGVTKLPHFDVPEGYD--- 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 L GL R ++ +LD+EL+VI +M + YFLIV DFI Sbjct: 294 -SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVWDFIN 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ + IPVGPGRGS AGS+ +Y IT+IDP+R++LLFERFLNP+R++MPD DIDFC + Sbjct: 346 YARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDIDFCYE 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG + V QI+TFG+L A+ +RDVGR + +PY+ D + K IPN+ Sbjct: 406 RRSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPNELNI 465 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + R +D +V RL++++++LEGL RH S HAAG+VI + + + VP+ Sbjct: 466 TID-KALIMNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDEYVPL 524 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 R + TQF M IE+ GL+K DFLGL+TLT++ ++ + + G+K+D+ I ++ Sbjct: 525 SRSSDGTI-TTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDNIDYN 583 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + + T G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y Sbjct: 584 DKKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPKYIKG 643 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN E + + ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK + Sbjct: 644 KNEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKKKQYV 703 Query: 725 MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 +D +++ F I G NGIS+ A I++ + FA Y FNKSHAAAYAV++YQT Sbjct: 704 IDAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVVAYQT 763 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K +YPVEF+AA MT +DN K+ ++ RQ I+++ P +N F + I Sbjct: 764 AYLKYYYPVEFMAALMTSVIDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATKDGIR 823 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y + AIK +G I+ E A+ + +L DF SRV +++N+R +E+L+ AGA D Sbjct: 824 YGMYAIKSIGRQVIDIILAEREANGKYITLSDFLSRVAGREVNKRAVENLIKAGACDGLD 883 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEKFSVENSSV 950 +R Q+L + + +KN ++F EK + + +E+++ E + Sbjct: 884 GNRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLVSEEEKKAYEVRFPNVEEYTKE---I 940 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY--------EESVATIRGN-NIRLAAMV 1001 + E+ VLG Y SGHPL+ Y+ RK I E + I+ N ++ + ++ Sbjct: 941 KLGFEKEVLGIYLSGHPLEEYEEKWRK-NISAVTADFMLDEETNAVKIKDNQSVVIGGII 999 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K T++ + ++T + E FP Sbjct: 1000 TEKTIKYTKQNKAMAFITVEDLFGTVEVIIFP 1031 >gi|260910104|ref|ZP_05916781.1| DNA-directed DNA polymerase III alpha subunit [Prevotella sp. oral taxon 472 str. F0295] gi|260635608|gb|EEX53621.1| DNA-directed DNA polymerase III alpha subunit [Prevotella sp. oral taxon 472 str. F0295] Length = 1235 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 382/1116 (34%), Positives = 587/1116 (52%), Gaps = 105/1116 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------SQ 60 FVHL VH+ YS+L+G S+ ++DK A+ +A+TD N+F EF + Sbjct: 4 FVHLHVHTYYSILDGQSSIQRLVDKAIANGMGGMALTDHGNMFGTKEFYNYCKKVNAKRK 63 Query: 61 KACAAGIQPIIGCQLDI-------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 + +PIIGC++ + +++N M+ +++L GY+ LI Sbjct: 64 EEGLPAFKPIIGCEMYVARHRKTDKVKENGDMSGY---------HLIVLAKNYTGYKNLI 114 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +LVSR ++ D R L E EGLI+ + +G + R N + A + Sbjct: 115 KLVSRAWV-DGYYMRPRTDREDL-ETYHEGLIVCSACIAGEVPRKILRNDIEGAREAAQW 172 Query: 174 FKKLFGDRLYVNLQRHRGYDRY----RESQVVQ---------LAYTHELPLVATNNSLFL 220 + ++FGD Y+ LQRH D Y RE+ +Q +A + +V TN++ F+ Sbjct: 173 YHRVFGDDYYLELQRHEVKDPYIRANREAYPLQQRANKVMLEMAEEMGINVVCTNDAHFV 232 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 +E+ EAHD L+ ++ + R + + K R EM +F DLP+A+ NTVEI + Sbjct: 233 DQENAEAHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNEVFGDLPQAMRNTVEILNK 292 Query: 281 CSFILQVHAPILP----------------RFIEKECDDIQKEEEN----------ELRNK 314 H+PI+P R EKE D +EN E + K Sbjct: 293 VETYSIDHSPIMPFFPIPEDFGTEEQWRERISEKELYDEFTSDENGQNQLPPEEGEDKIK 352 Query: 315 AVAGLE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + G E +LA + Y +++ R+R++FEL+++ M F GYFLI Sbjct: 353 KLGGYEKLYRIKFEADYLAKLAYDGAKRLYGEPLSEEVRERVNFELHIMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A+ ++ VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD Sbjct: 413 VQDFINTAQNELDVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R V+ +V++KYGH++VA IIT+G++ K +++DVGR ++P V+ LCKL Sbjct: 473 DTDFDDDGRGRVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVGRVEKVPLKIVNDLCKL 532 Query: 479 IPNDPAHPVSL---QAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP+ + + AI REA AD + + ++ LEG R HA G +I Sbjct: 533 IPDKLPDGMKMSVANAIKAIPELREAEASADEGLRNTMMYAKMLEGTVRGTGIHACGTII 592 Query: 535 GDRPLSQLVPMYR-----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 +S VP+ D L TQ++ IE+ GLIK DFLGLKTL++L+++++ + Sbjct: 593 CRDAISDWVPVSTAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEAVENV 652 Query: 590 -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 G +DL IP DD +TY L T+G FQ ES+GM++ L +QP ED+IA+ + Sbjct: 653 RISTGETIDLEKIPIDDPKTYQLYCEGRTIGTFQFESAGMQKYLRELQPSVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RK K+ P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPDFIARKRDPSKVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 ++D LR+AMGKK+ +MDK + F G KNG K + I+E KFA Y FNKSHA Sbjct: 773 QSDTLRKAMGKKLIAQMDKLETLFYEGGMKNGHPKEVLNKIWEDWKKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ +++QTA+ K HYP E++AA M+ + N+ I KF + R I+ + P VN + F Sbjct: 833 YSWVAFQTAYFKAHYPAEYMAAVMSRNLANIADITKFMDECRAMGIKTLGPDVNESRLKF 892 Query: 829 KVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V + I + LAAIKG+G A+ I+ E + P+ S+ D RV+ +N++ +ESL Sbjct: 893 SVNKHGEIRFGLAAIKGMGDAAAQAIIQEREKNGPYTSVFDMVQRVNLSSVNKKAIESLA 952 Query: 887 FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 +G D FG +R + +DN+ +Y Q + + ++F Sbjct: 953 LSGGFDSFGIARESYFGTDSKGSTFIDNLTRYGQLFQMEQQQMRNSLFGDSNAVEVATPP 1012 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVATIRGNNIR 996 + + +S R E+ ++G Y S HPLD YK +L+ M G E+ +A ++ + Sbjct: 1013 VPQAERWSSIERLNKERDLVGIYLSAHPLDDYKIVLQAMCNTGCNELEDKMALVQKAEVT 1072 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 LA MV + + T+ G G+VT + + E FF Sbjct: 1073 LAGMVTNTRSAVTKMGKPCGFVTIEDYSGSGELAFF 1108 >gi|271964395|ref|YP_003338591.1| DNA polymerase III subunit alpha [Streptosporangium roseum DSM 43021] gi|270507570|gb|ACZ85848.1| DNA polymerase III alpha subunit [Streptosporangium roseum DSM 43021] Length = 1173 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 394/1065 (36%), Positives = 582/1065 (54%), Gaps = 85/1065 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL VH+ YS+L+GA L + ++ PAIAITD N+ A +F ++A AGI Sbjct: 2 SDSFVHLHVHTEYSMLDGAARLKQMFKQVGDLGMPAIAITDHGNMHGAYDFYKQATGAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS--------------IVLLVSTAEGYQRLI 113 +P+IG + + +Q K P + + A+G L+ Sbjct: 62 KPVIGIEAYVAPASR----HQKKPVLWGEPHQKRDDVSAGGYYTHMTIWAKNAKGLTNLM 117 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +L SR Y ++ R+ L E +EGL+ TG SG + A Sbjct: 118 KLSSRAYTEGFVRKWARMDAETLAE-HSEGLMATTGCPSGEVQTRLRLGQYDEALAAAAK 176 Query: 174 FKKLFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 F++LFG D Y+ + H G D R + +++ +P + TN+S + E D +HD Sbjct: 177 FQELFGRDNYYLEIMDH-GLDIERRVRDGLTRISRDLNIPPLVTNDSHYTYESDATSHDA 235 Query: 231 LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSI-FSDL-PEALENTVEIARRCSFI-LQ 286 L+ + ++ DR R +Y+K EM ++ SDL E NT+ +A + + Sbjct: 236 LLCIQTGKQLADPDRFRFDGSGYYIKTADEMRAVDSSDLWAEGCRNTLLVAEKVDPTGMF 295 Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 ++P F E D EE+ R + G+E R +G +++R +++FE+N Sbjct: 296 GFKNLMPTFPIPEGD----SEESWFRKEIWKGMERRFPEGV------DEEHRAQIEFEMN 345 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI +M F YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL L+FER Sbjct: 346 VILQMGFPSYFLVVADFIMWAKNNGIRVGPGRGSAAGSLAAYALGITDLDPLPHGLIFER 405 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNPDR+SMPD DIDF + RR +VIRYV KYG ++VA I TFG+++AKAA++D R L Sbjct: 406 FLNPDRVSMPDVDIDFDERRRGDVIRYVTEKYGADKVAMIATFGTIKAKAAIKDAARVLG 465 Query: 467 MPYSQVDRLCKLIPNDPA---HPVSLQAI--ADDSRFREA----RLADPSVD--RLLEIS 515 PY+ D++ K P PA + L I D R+ EA +L D VD +++ Sbjct: 466 HPYALGDKVSKAFP--PAVMGKDIPLSGIFDKDHPRYNEAGELRKLYDEDVDVKSAMDLG 523 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + LEGL R HAAG+++ L+ +P+ R + +TQF+ E GL+K DFLG Sbjct: 524 RGLEGLIRQTGVHAAGVIMSSEVLTDYIPIMRRDSDGVIITQFDYPTCETLGLLKMDFLG 583 Query: 576 LKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L+ LT++ L + A G K+DL +P DD +TY LL TLG+FQL+ GMR L Sbjct: 584 LRNLTIIDDCLKMIEANTGTKIDLLKLPLDDRKTYELLGRGDTLGVFQLDGGGMRSLLRL 643 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688 M+PD EDI A+ +LYRPGP+ D+ Y RKNG + I IHP + L+E T G+ Sbjct: 644 MKPDNFEDISAVGALYRPGPMGADSHTNYALRKNGLQDITPIHPEFEESLQEILGTTHGL 703 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQVM IAQ ++G+SL +AD+LRRAMGKK K E+DKQ E F G NG S Sbjct: 704 IVYQEQVMAIAQKVAGFSLGKADLLRRAMGKKKKSELDKQFESFEQGMKDNGYSAAAIKT 763 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++++L F+DY FNK+H+AAY ++SY TA++K +YP E++A +T D+ +K + + Sbjct: 764 LWDILLPFSDYAFNKAHSAAYGLVSYWTAYLKANYPSEYMAGLLTSVKDDKDKSALYLNE 823 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLED 867 R+ I+++PP VN DF + + L+AI+ VG I+ A +K F +D Sbjct: 824 CRRMGIKVLPPDVNDSDFDFTPRGTDVRFGLSAIRNVGGNVVDGIIAARREKTRFADFKD 883 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKH 923 F +V N+RV+ESL+ AGA D F + R L+ Q++D+I ++KN Sbjct: 884 FLRKVPMVVCNKRVIESLIKAGAFDSFAHERKGLVMVHEQAVDSIIG----IKKNEAQGQ 939 Query: 924 ENIFAHEKG----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 +++F +G TF +I ++ + + ++FE E +LG Y S HPL + IL Sbjct: 940 DSLFGAVEGAEDQTFDVQIPPGEWD-KTTLLQFERE--MLGLYVSDHPLFGVEHIL---- 992 Query: 980 IKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWV 1018 G + S+A ++ N + + ++ Q+K T+KG WV Sbjct: 993 ASGADCSIAALQDENRSDGQVVTVGGILSGVQRKVTKKGDT--WV 1035 >gi|269837330|ref|YP_003319558.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM 20745] gi|269786593|gb|ACZ38736.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM 20745] Length = 1167 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 368/1060 (34%), Positives = 571/1060 (53%), Gaps = 76/1060 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ +SLL+G + + + + IAITD ++ +++ + A A + PI Sbjct: 6 FAHLHLHTEFSLLDGMGRIKDYMARAREFGMEHIAITDHGVMYGVIDWYKAARAHDLHPI 65 Query: 71 IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +G + + ++D K + ++LL GY+ L+ L SR L + Sbjct: 66 LGIEAYLAPGSIEDREKQSYH----------LLLLAENERGYRNLLRLASRASL-EGFYY 114 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ L L + +G+I + GP+ F + A + K++FG D Y+ + Sbjct: 115 KPRVDLDMLNSL-RDGIICTSACLGGPVANNFLQGRDEEAVRLAGILKEMFGPDHFYIEI 173 Query: 187 QRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Q H G + R++ Q+++LA +LPLVATN+ ++ + D ++L+ + +T + Sbjct: 174 QDH-GIEGQRQTNPQLIELARKLDLPLVATNDVHYVDKSDAPLQELLVCIQTNTTLHDPK 232 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ---VHAP-------ILP 293 R R+ D Y K+ EM +F ++PEALENT+ IA RC+ L+ +H P + P Sbjct: 233 RLRMESDQLYFKSPEEMWRLFGEVPEALENTIRIAERCNVDLEFGRLHLPDPGIPEGMTP 292 Query: 294 R-FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 ++ + C D + E+ ++ R+RL++EL+VI Sbjct: 293 HEYLCQLCWDGVRRRYPEV----------------------TEEVRRRLEYELDVIQETG 330 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 FS Y LIV DF ++A++ I G RGS A S+ Y L ITDIDPL L+FERFLN +R Sbjct: 331 FSSYMLIVRDFAEFARQRRISFGV-RGSAAASIVLYTLGITDIDPLANRLVFERFLNRER 389 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 MPD D+DF +RR EVI YV +KYGH+RVAQIITFG++ AKAA+RD GRA+ Y+ V Sbjct: 390 REMPDIDMDFADNRRAEVIDYVASKYGHDRVAQIITFGTMGAKAAIRDTGRAMGWAYNDV 449 Query: 473 DRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 DR+ +LIP+ ++L +A+ + R+ DP+ L++ +++LEG+ RHA THAAG Sbjct: 450 DRIARLIPS--TLNITLDKALQESPELRQLYETDPACRELIDNAKRLEGISRHAGTHAAG 507 Query: 532 IVIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 +VI PL + +P+ R R++ LP TQF M+ + + GL+K DFLGL LT+L ++++ Sbjct: 508 VVIAADPLVEHLPLQRPARAEEGALPTTQFPMETVAEIGLLKMDFLGLANLTILGEAVEL 567 Query: 589 LAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + Q GV++D IP D +TY +L+ T G+FQLES+GMR+ + ++P I ++ A+V Sbjct: 568 IRQTTGVEIDPKKIPDGDEKTYAMLSQGETFGVFQLESAGMRRYIRELRPSSIAELAAMV 627 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +LYRPGP+ +I Y K+G E I HP + +L ET GVI+YQ+QV+ IA+ +GY+L Sbjct: 628 ALYRPGPMQHIPTYCRAKHGLEPIRYPHPDLAEILDETYGVIVYQDQVLLIARKFAGYTL 687 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 EAD++R+AMGKKI E M ++ERF+ GA + G S A N+F L+ FA Y FNK+HA Sbjct: 688 GEADIMRKAMGKKIPEVMKAERERFLRGAQEKGYSAEDAQNVFNLIEPFAGYAFNKAHAV 747 Query: 768 AYAVISYQTAWMKTHYPVEFLAASM----TLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 YA ISYQT+++K +YP E++ A + + +++ + ++ I ++PP +N Sbjct: 748 CYATISYQTSYLKANYPAEYMTAVLRGAPSHPSGATQRVAAAVAECQKLGIPVLPPDINK 807 Query: 824 PCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSK 875 VDF++ G I + LA +K VG I+ A P F+S E FC VD Sbjct: 808 SGVDFEIEILEDGTKAIRFGLAIVKNVGEAAVESIVAARKSLPGERFESFEQFCDTVDWT 867 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 +NRRV ESL+ GALD G R LL L+ AQ ++ ++F+ Sbjct: 868 VVNRRVAESLIKCGALDSLG-DRATLLAVLEQAISAAQSRQRAAKRGQIDLFSAAPVAAP 926 Query: 936 DKITLEKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 V + E+ +LG Y S HPL+ P++R G E G Sbjct: 927 ALALAMPDDVPEIPRATLLAWEKELLGLYLSSHPLNDLVPLIRDGGYVRLAEIDEETVGQ 986 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I M+ ++ T+ + + E FP Sbjct: 987 QIEAIVMITGMRKLTTKTNRVMAICQLEDQTGAIEMVVFP 1026 >gi|28572411|ref|NP_789191.1| DNA polymerase III subunit alpha [Tropheryma whipplei TW08/27] gi|28410542|emb|CAD66928.1| DNA polymerase III alpha subunit [Tropheryma whipplei TW08/27] Length = 1164 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 389/1037 (37%), Positives = 563/1037 (54%), Gaps = 58/1037 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA +++ K A D+ PAIAITD N F A +F + A I P Sbjct: 6 SFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWKTAKTYDINP 65 Query: 70 IIGCQLDIDMQDNLK------MTNQGK---TPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 IIG + + N K + G + + LL EG L +L S + Sbjct: 66 IIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHNLFKL-SSLA 124 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 ++ RI + L + + GLI TG SG I A + + +FG Sbjct: 125 SIEGYYFKPRIDIELLNQY-SNGLIATTGCPSGEIQTRLRLGQYSEARQAAAQMRDIFGP 183 Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y + H ++ +++LA LPL+ATN+ +++ ED +H L+ V + Sbjct: 184 ENYYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHAALLCVQSGS 243 Query: 239 VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 ++ +R + D YLK+ SEM +F DLPEA +NT+ +A RC +PRF Sbjct: 244 TINDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQRSFMPRFSV 303 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E + E + ++ G+ R G ++ ++ ++E+ V+ ++GYF Sbjct: 304 PEGE----TENSWFASEVKRGIASRYPNGP------SRRVIEQAEYEIRVVQEAGYAGYF 353 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N I VGPGRGSGA S+ AYA+ ITD+DPL L+FERFLNP R+SMPD Sbjct: 354 LIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFLNPARISMPD 413 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDF + RR EVI YV KYG + VAQI+TF +++AK AL+D R L PYS +RL K Sbjct: 414 FDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYPYSFGERLTK 473 Query: 478 LIPNDPA---HPVSLQAIADD--SRFREARL------ADPSVDRLLEISQKLEGLYRHAS 526 +P PA + L+AI D SR REA +D + ++ ++ LE L R + Sbjct: 474 AMP--PAVMGREIPLRAIFDTTHSRHREASEVRQMIESDYEMQQIFNTAKGLENLKRQWA 531 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HAAG+++ D P+ ++P+ + VTQF+ E GL+K DFLGL+ LT++ +L Sbjct: 532 VHAAGVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNLTIIDDAL 591 Query: 587 DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + Q + KVDL +P DD E Y LL TLG+FQL+S +RQ LE MQPD +DI A Sbjct: 592 ANIRQNKNTKVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPDSFDDISA 651 Query: 646 LVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQIA 699 ++LYRPGP+ + Y RKN K++I IHP + +L T G+I+YQEQV+ IA Sbjct: 652 AIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGLIVYQEQVIGIA 711 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q L+G++L EADVLR AMGKK K+E+D+Q +F +G K G S ++ +L F+DY Sbjct: 712 QKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNVLLPFSDY 771 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+HA AY +ISY TA++K HYP E++AA +T + +K+ + Q+ R I+++ P Sbjct: 772 AFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHMCIKVLLP 831 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879 +N F I + L AIK VG I+E D PF SL DF R+ LNR Sbjct: 832 DINVSRSGFTPSGENILFGLGAIKNVGANLIDDILEVREDGPFVSLIDFVQRMPHSVLNR 891 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R + SL+ AGA D +R +SL +I + +E + N + + G + Sbjct: 892 RSVMSLIQAGAFDSIHPNR----RSLMDIHRSV--LENCQANARRSDVSLLDGLLDE--- 942 Query: 940 LEKFSVE-----NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 E FS N+ R + E+ +LG Y S HPLD + L K E ++ + Sbjct: 943 YEGFSPPDIPDWNNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQDV 1002 Query: 995 IRLAAMVVSKQQKKTRK 1011 IR+A ++ S + K R+ Sbjct: 1003 IRVAGLITSVEHKVARR 1019 >gi|291525519|emb|CBK91106.1| DNA polymerase III catalytic subunit, DnaE type [Eubacterium rectale DSM 17629] Length = 1166 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 375/1061 (35%), Positives = 579/1061 (54%), Gaps = 59/1061 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL H+ YSLL+G+ + + ++ + AITD N++ +EF + A A I P Sbjct: 2 SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +IGC++ + + T+ G + ++LL GY L+++VS + + Sbjct: 62 VIGCEVYVAPNSRFDRETSHGDDRYY---HLILLAENNTGYANLMKIVS-IGFTEGYYYR 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDR----AFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L+ EGLI L+ +G I R F+ + ++A K ++ FG D + Sbjct: 118 PRVDFETLERY-HEGLICLSACLAGEIPRYIVRGFYDEAKEIARK----YQDCFGKDNFF 172 Query: 184 VNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQ H G D + Q+++++ E+ LV TN+ + E D EAHDVL+ + VS Sbjct: 173 LELQDH-GIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVS 231 Query: 242 QKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +DR R + +K+ +M ++F EA+ENT +IA RC+ L+ +P++ E Sbjct: 232 DEDRMRYDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEG 291 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIA----KGYHAQDYRQRLDFELNVIARMKFSGY 356 D + EL K E + G + K HA +D+EL +I M F Y Sbjct: 292 YDSAEAFLTELCEKGFR--EKYIGCGEYSDEELKKIHAD-----MDYELGIIKTMGFIEY 344 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 LIV D+I W + ++ VGPGRGS AGS Y ITDIDP++++LLFERFLNP+R+SMP Sbjct: 345 ILIVWDYINWCRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMP 404 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF R I YVQ KYGH+ V QI+TFG++ A+ ++ VG+AL PY++ DRL Sbjct: 405 DIDVDFEYAERYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLA 464 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 K++P + + +A+ + F+ +D V +++++++LEGL H S HAAG+VI Sbjct: 465 KMVPQELNITID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYP 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVK 595 S VP+ R P ++NM +E+ GL+K DFLGL+TLT+L+ S+ + A RG+ Sbjct: 524 GVASDYVPLGR-ANDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGID 582 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ I F+D T + T T G+FQLES+GM+ ++ + P EDI+A +SLYRPGP+ Sbjct: 583 VDIDHIDFNDKGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPM 642 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I Y KN ++I + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RR Sbjct: 643 DFIPNYIKGKNNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRR 702 Query: 716 AMGKKIKEEMDKQ--------KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AM KK + +D + KER I G NGI + A +I++ + FA Y FNKSHAA Sbjct: 703 AMSKKKQYVIDAERQSFVYGDKERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA IS QTAW+K +YPVEF+AA MT +DN K ++ R I+++PP +N + Sbjct: 763 AYAKISVQTAWLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGE 822 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKL-NRRVLESL 885 F + + Y + AIK +G I+E + + +L DF R K+L N+R +E+L Sbjct: 823 FTAEGDHVRYGMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TL 940 + AGA D +R Q+ +I Q +K+ ++F ++ +F K + Sbjct: 883 IKAGACDSLDGTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNV 942 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVATIRGNN 994 ++ E + E+ VLG Y SGHPL+ Y L+K + EES A +N Sbjct: 943 GEYDAEEA---LAYEKEVLGIYLSGHPLEKYAAALKKNITANAIDFVLEEESGAVKIEDN 999 Query: 995 --IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+ +K K T+ + ++T + E FP Sbjct: 1000 AHVVIGGMIATKTIKFTKYNQAMAFITIEDLTGTVEVIIFP 1040 >gi|167745888|ref|ZP_02418015.1| hypothetical protein ANACAC_00582 [Anaerostipes caccae DSM 14662] gi|167654403|gb|EDR98532.1| hypothetical protein ANACAC_00582 [Anaerostipes caccae DSM 14662] Length = 1153 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 387/1055 (36%), Positives = 594/1055 (56%), Gaps = 56/1055 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + ++ +IAITD ++ ++F + A A GI+P Sbjct: 2 SFTHLHVHTEYSLLDGSSKIKELVHHTKELGMDSIAITDHGVMYGVIDFYKAAKAEGIKP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+GC++ + K QG + + +VLL GY L+++VSR + + Sbjct: 62 ILGCEIYVTPGSRFEKEARQGSSNYF---HLVLLAENDRGYHNLMKIVSRGFT-EGFYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 R+ L+ +EGLI L+ G I + A++ L F++++G ++ LQ Sbjct: 118 PRVDYEVLERY-SEGLIALSACLGGEIPTYIREGDYEKAKETALRFERIYGKGNFFLELQ 176 Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ S +++++ + LVATN+ + ED E HD+L+ + V+ +DR Sbjct: 177 DHGISEQTTVNSALIKMSKETGIELVATNDIHYTFAEDVEPHDILLCIQTGKKVADEDRM 236 Query: 247 RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R +YLK+ EM +F +A+ENT +IA RC+ + +P+F E D Sbjct: 237 RYEGGQYYLKSPEEMERLFPYARQAVENTGKIAERCNVEIIFGEQKVPKFDVPEGDT--- 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR +L + I + Y ++ R+RL+FEL I M + YFLIV DF Sbjct: 294 -STSYLR---------KLCEEGICRRYDDVTEELRERLEFELKTIENMGYVDYFLIVWDF 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +AK++ I VGPGRGS AGS+ +Y L ITDI+P+++ LLFERFLNP+R+SMPD DIDFC Sbjct: 344 IHYAKEHGIAVGPGRGSAAGSIVSYCLEITDIEPIKYQLLFERFLNPERVSMPDIDIDFC 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+ Sbjct: 404 YERRQEVIDYVVEKYGKDKVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGIAKMVPNEL 463 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + A+ ++A D L+++S++LEGL RHAS HAAG+VIG + + V Sbjct: 464 NITIE-GALKKSPDLKKAYAEDEETKYLIDMSRRLEGLPRHASMHAAGVVIGKDSIDEFV 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602 P+ + D TQF M IE+ GL+K DFLGL+TLT++Q ++ + +R G D++ I Sbjct: 523 PLAKGA-DDAVTTQFTMTTIEELGLLKMDFLGLRTLTVIQDAVHLIEKREGKPFDINQID 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D + Y +++ T G+FQLES GM+ ++ ++P+ +E+IIA +SLYRPGP+D I Y Sbjct: 582 TEDPKVYEMISQGRTEGVFQLESGGMKAFMKELKPESLEEIIAGISLYRPGPMDFIPRYV 641 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K K+ I P ++ +LK T G I+YQEQVMQI L+GY+L +D++RRAM KK Sbjct: 642 KGKVDKDSIRYDCPQLEKILKPTYGCIVYQEQVMQIVMELAGYTLGRSDLVRRAMSKKKG 701 Query: 723 EEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 + M K+++ F I G KNGI + A +I++ + FA Y FNKSHAAAYAV++Y Sbjct: 702 DVMVKERKNFVYGNEKEDIPGCIKNGIDEKTANHIWDEMLDFAKYAFNKSHAAAYAVVAY 761 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA+++ HY EF+AA +T + N K+ ++ R+ I+I+PP +N F V D Sbjct: 762 QTAFLRCHYQKEFMAALLTSVLGNTNKVSEYIYACRKMGIKILPPDINKGEGAFSVDDGC 821 Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L+AIK +G I+ E S + SL D R+ SK++N+R +ESL+ +GALD Sbjct: 822 IRYGLSAIKSLGKPVIEEILRERSEGGSYKSLRDLIERLSSKEMNKRTVESLIKSGALDE 881 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RF 952 GY+R Q + +I + Q K+ + +I F + + F +E V F Sbjct: 882 LGYTRKQQMFVYASILESIQKERKHEISGQMSIL-----DFMSEDQQKNFEIEYPDVGEF 936 Query: 953 ENEQR------VLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------TIRGNNIRLAA 999 + EQR VLG Y SGHPL+ IL ++ + A +R + Sbjct: 937 DKEQRLAMEKEVLGIYVSGHPLEDDVEILERLTTASTADFTAEEDTGQPVLRDKQTCIIG 996 Query: 1000 MVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFFP 1033 ++S + K TR + ++T + E FP Sbjct: 997 GIISDMKVKLTRTNQNMAFLTLEDLMGTVEVIVFP 1031 >gi|291528373|emb|CBK93959.1| DNA polymerase III catalytic subunit, DnaE type [Eubacterium rectale M104/1] Length = 1166 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 372/1059 (35%), Positives = 581/1059 (54%), Gaps = 55/1059 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL H+ YSLL+G+ + + ++ + AITD N++ +EF + A A I P Sbjct: 2 SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +IGC++ + + T+ G + ++LL GY L+++VS + + Sbjct: 62 VIGCEVYVAPNSRFDRETSHGDDRYY---HLILLAENNTGYANLMKIVS-IGFTEGYYYR 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDR----AFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L+ +GLI L+ +G I R F+ + ++A K ++ FG D + Sbjct: 118 PRVDFETLERY-HDGLICLSACLAGEIPRYIVRGFYDEAKEIARK----YQDCFGKDNFF 172 Query: 184 VNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQ H G D + Q+++++ E+ LV TN+ + E D EAHDVL+ + VS Sbjct: 173 LELQDH-GIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVS 231 Query: 242 QKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +DR R + +K+ +M ++F EA+ENT +IA RC+ L+ +P++ E Sbjct: 232 DEDRMRYDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEG 291 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAI--AKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + EL K + + ++ K HA +D+EL +I M F Y L Sbjct: 292 YDSAEAFLTELCEKGFREKYIGCGEYSVDELKKIHAD-----MDYELGIIKTMGFIEYIL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV D+I W + ++ VGPGRGS AGS Y ITDIDP++++LLFERFLNP+R+SMPD Sbjct: 347 IVWDYINWCRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDI 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DF R I YVQ KYGH+ V QI+TFG++ A+ ++ VG+AL PY++ DRL K+ Sbjct: 407 DVDFEYAERYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKM 466 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 +P + + +A+ + F+ +D V +++++++LEGL H S HAAG+VI Sbjct: 467 VPQELNITID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGV 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVD 597 S VP+ R P ++NM +E+ GL+K DFLGL+TLT+L+ S+ + A RG+ VD Sbjct: 526 ASDYVPLGR-ANDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGIDVD 584 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + I F+D T + T T G+FQLES+GM+ ++ + P EDI+A +SLYRPGP+D Sbjct: 585 IDHIDFNDKGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMDF 644 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y KN ++I + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM Sbjct: 645 IPNYIKGKNNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAM 704 Query: 718 GKKIKEEMDKQ--------KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 KK + +D + KER I G NGI + A +I++ + FA Y FNKSHAAAY Sbjct: 705 SKKKQYVIDAERQSFVYGDKERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A IS QTAW+K +YPVEF+AA MT +DN K ++ R I+++PP +N +F Sbjct: 765 AKISVQTAWLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFT 824 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKL-NRRVLESLVF 887 + + Y + AIK +G I+E + + +L DF R K+L N+R +E+L+ Sbjct: 825 AEGDHVRYGMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIK 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEK 942 AGA D +R Q+ +I Q +K+ ++F ++ +F K + + Sbjct: 885 AGACDSLDGTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGE 944 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK------MGIKGYEESVAT-IRGN-N 994 + E + E+ VLG Y SGHPL+ Y L+K + EES + I+ N + Sbjct: 945 YDAEEA---LAYEKEVLGIYLSGHPLEKYAAALKKNITANAIDFVLEEESGSVKIKDNAH 1001 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+ +K K T+ + ++T + E FP Sbjct: 1002 VVIGGMIATKTIKFTKYNQAMAFITIEDLTGTVEVIIFP 1040 >gi|332169580|gb|AEE18835.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 1463 Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust. Identities = 371/1078 (34%), Positives = 571/1078 (52%), Gaps = 87/1078 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 F HL HS +S+L+ S+ +I+ A + PA+A+TD N+ A F++ Sbjct: 262 FAHLHNHSQFSILQSTASVQDIVKAAALHKMPAVAMTDMGNMMGAFHFTKAVKSHNAFAK 321 Query: 61 ----KACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 K AG ++ IIGC+ N+ + ++ K+ IV+L GY Sbjct: 322 AENAKLTEAGEAEEHVPLKAIIGCEF------NVCVDHKNKSQKDNGYQIVILAKNKNGY 375 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 Q L ++ S Y G V + E E LI+LTG G + + AE+ Sbjct: 376 QNLCKMASIAYT--DGFYYVPRIDKQVIEQYKEDLIVLTGNLYGEVPSKILNVGEKQAEE 433 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAH 228 L+ +K+ FGD LYV + RH D R V + L+ H++ L+A+NN+ ++ + D +AH Sbjct: 434 ALIWWKEQFGDDLYVEIMRHGQEDEDRVMPVLITLSRKHDVKLIASNNTFYIDKSDADAH 493 Query: 229 DVLMAVAHS-TVVSQKDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 DVL+ V V + K R R ++Y K+ EM ++F+D+PEA+ N E+ + Sbjct: 494 DVLLCVKDGEKVATPKGRGRGYRFGLPNDEYYFKSADEMKTLFADVPEAILNVQEVVNKI 553 Query: 282 SFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 +LP F E D ++ E L++ G + R + Sbjct: 554 ESYELARDVLLPAFDIPEEFVSPEDAIDGGKQGENAFLKHLVYEGAKKRYGEEL------ 607 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 +++ +RLDFEL+VI + + GYFLIV DFI+ A+ ++ VGPGRGS AGSV AY L IT Sbjct: 608 SEEVIERLDFELDVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVAAYCLWIT 667 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 +IDPL++ LLFERFLNPDR+SMPD DIDF + R V++YV +KYG +VAQIIT+G++ Sbjct: 668 NIDPLKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGANQVAQIITYGTMA 727 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLAD--PSVD 509 AK+++RD RAL + DR+ KLIP L+ I D+ R A +D P V Sbjct: 728 AKSSIRDTSRALDLSLGDADRIAKLIPT----MSKLRKIFGKTDAELRSAFRSDDLPKVQ 783 Query: 510 RLLEISQ-------------KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 L+ + Q +LEG R+ HA G++I ++ VP+ SDL VT Sbjct: 784 ELITLEQADNLEGQMLRQARQLEGSVRNTGIHACGVIITPSDITNFVPVALAKDSDLYVT 843 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615 QF+ +E+AGL+K DFLGLKTLTL++ ++ + R V +D P DD +TY L Sbjct: 844 QFDNSVVEEAGLLKMDFLGLKTLTLIKDTVKLVKYRHDVDLDPESFPLDDEKTYELFQRG 903 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675 T+GIFQ ES GM++ ++ ++P ED+IA+ +LYRPGP++ I + RK+G+E+I Sbjct: 904 DTVGIFQYESPGMQKHMQSLKPTVFEDLIAMNALYRPGPMEYIPSFVRRKHGEEEIEYDL 963 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 P ++ LKET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK +DK K +FI Sbjct: 964 PAMEEYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQ 1023 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 AS G I++ FA Y FNKSH+ YA I+YQTA++K HYP E+LAA ++ Sbjct: 1024 ASAKGHDPEKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYLAAVLSNN 1083 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM 854 M++++++ F ++A++ ++++ P VN F V DN + + + A+KGVGT I+ Sbjct: 1084 MNDIKQVTFFMEEAKRMGLEVLGPDVNESFRKFTVNDNGAVRFGMGAVKGVGTGAVATIV 1143 Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS--RMQLLQS-------L 905 E D + S+ DF RVD + N++ ESL AG D + R Q L Sbjct: 1144 ENRKDGNYKSVFDFARRVDLRAANKKAFESLALAGGFDELDRNTHRAQFFNHDGDGITFL 1203 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + KY ++N + ++F + + + + + E+ V+G Y SG Sbjct: 1204 EKAVKYGARYQENENSSQVSLFGESSEVQIPEPEVPPCEEWGTMEKLKREKEVVGVYISG 1263 Query: 966 HPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 HPLD +K + + + + + ++ Q + ++ G GW F+ Sbjct: 1264 HPLDDFKTEMETFCNATVAHFSQMESFINRELTFGGVISDVQHRVSKNGK--GWAAFT 1319 >gi|239917850|ref|YP_002957408.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665] gi|281413657|ref|ZP_06245399.1| DNA polymerase III subunit alpha [Micrococcus luteus NCTC 2665] gi|239839057|gb|ACS30854.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665] Length = 1198 Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust. Identities = 371/1013 (36%), Positives = 550/1013 (54%), Gaps = 68/1013 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL H+ YS+L+GA L+++ + ++AITD LF A +F KA AAG Sbjct: 13 KDGGFVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKAKAAG 72 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFP-------------TVPSIVLLVSTAEGYQRLI 113 ++PIIG + + + T++ KT + + LL T EG L Sbjct: 73 VKPIIGLEAYVAPGQQHR-TDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLF 131 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 + S L + R+ L + ++GLI TG SG + + A + Sbjct: 132 RMGSIASLDSVYAKWPRLDRELLSQY-SKGLIATTGCPSGEVQTRLRLGQYREAMQAASD 190 Query: 174 FKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 F+ +FG Y H G D R + + +LA LP VATN+ + E D +AH+ L Sbjct: 191 FRDIFGKDNYYCEIMHHGLDIERRVVTDLRRLAKDLGLPFVATNDLHYTHEHDAKAHEAL 250 Query: 232 MAVAHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284 +A+ + +++ + ++YLK+ +M +F++LPEA +NT+ IA RC Sbjct: 251 LALQSGSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVE 310 Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 A +P F E +D E + L + +GL R G R++ D+E Sbjct: 311 FDTKANYMPVFPTPEGED----ETSWLIKEVASGLAYRYPDGV------PDHVRKQADYE 360 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 L+VI M F GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYAL ITD+DPL+ L+F Sbjct: 361 LDVIISMGFPGYFLVVADFINWAKENGIRVGPGRGSGAGSMVAYALRITDLDPLKHGLIF 420 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNPDR+SMPDFD+DF RR EVI YV KYG ERV I+T+G+++ K AL+D R Sbjct: 421 ERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARV 480 Query: 465 LQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRL 511 + P+S + L K +P DPA P +A + FRE DP + Sbjct: 481 MDQPFSMGESLTKALPPAVMAKDIPLKDIEDPAAPRYGEA----APFRELIATDPVAKEV 536 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 E ++ LEGL R HAAG+++ P+ ++P+ R ++ +TQF+ E GLIK Sbjct: 537 FETAKGLEGLKRQWGVHAAGVIMSSVPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKM 596 Query: 572 DFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGL+ LT++ +++ + A +GV +DL + DD Y LL TLG+FQL+ MR Sbjct: 597 DFLGLRNLTIISDAIENVKANQGVDLDLETLDVDDPAAYELLARGDTLGVFQLDGGPMRS 656 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE---- 684 L+ M+PD EDI A ++LYRPGP+ ++ Y RKNG+++I IHP ++ L+E Sbjct: 657 LLKMMRPDNFEDISATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDT 716 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+I+YQEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ E F G G S+ Sbjct: 717 TYGLIVYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEA 776 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 ++++L F+DY FNK+H+AAY ++SY TA++K HYP E++AA +T D+ +K+ Sbjct: 777 AVKALWDILLPFSDYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAM 836 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFD 863 + + R I ++PP VN + F I + + A++ VG + +++ D + Sbjct: 837 YLNECRHMGITVLPPDVNESHLTFTPVGRDIRFGMGAVRNVGANVVKGMVQGREDGGSYT 896 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 DF ++V N+R +ES++ AGA D GY+R LL + A +K + + Sbjct: 897 GFGDFLAKVPLVVCNKRTIESMIKAGAFDSLGYARRALLAVHEEAVD-ATVAQKRKEDHG 955 Query: 924 E---NIFAHEKGTFSDKITLEKFSVEN-----SSVRFENEQRVLGFYFSGHPL 968 E ++FA G D + +V + + E+ +LG Y S HPL Sbjct: 956 EFTFDLFAPGGGDEDDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPL 1008 >gi|291539914|emb|CBL13025.1| DNA polymerase III catalytic subunit, DnaE type [Roseburia intestinalis XB6B4] Length = 1156 Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust. Identities = 369/1052 (35%), Positives = 594/1052 (56%), Gaps = 50/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F + A AAGI+P Sbjct: 2 SFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAAGIKP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+GC++ + + + G + +VLL +GYQ L+++VS+ ++ + Sbjct: 62 ILGCEVYVAPGSRFDRELSHGDDRYY---HLVLLAENNKGYQNLMKIVSKGFV-EGYYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 R+ + L E EG+I L+ +G + R + A++ ++K FG ++ LQ Sbjct: 118 PRVDMEVL-ETYHEGIIALSACLAGEVQRYLVRGLYEEAKETAYKYEKCFGKGNFFLELQ 176 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H + + +++++ + LVATN+ + ED E HD+L+ + +S ++R Sbjct: 177 DHGIPEQKTVNAGLMRMSQETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSDENRM 236 Query: 247 RVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R Y +K+ EM ++F +A++NT +IA RC+ ++ LP F E D Sbjct: 237 RYEGGQYFVKSEEEMRALFPYAAQAIDNTQKIADRCNVEIEFGVTKLPHFDVPEGYD--- 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 L GL R ++ +LD+EL+VI +M + YFLIV DFI Sbjct: 294 -SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVWDFIN 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ + IPVGPGRGS AGS+ +Y IT+IDP+R++LLFERFLNP+R++MPD DIDFC + Sbjct: 346 YARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDIDFCYE 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG + V QI+TFG+L A+ +RDVGR + +PY+ D + K IPN+ Sbjct: 406 RRSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPNELNI 465 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + R +D +V RL++++++LEGL RH S HAAG+VI + + + VP+ Sbjct: 466 TID-KALIMNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDEYVPL 524 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 R + TQF M IE+ GL+K DFLGL+TLT++ ++ + + G+K+D+ I ++ Sbjct: 525 SRSSDGTI-TTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDNIDYN 583 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + + T G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y Sbjct: 584 DKKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPKYIKG 643 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN E + + ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK + Sbjct: 644 KNEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKKKQYV 703 Query: 725 MDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 +D +++ F I G NGIS+ A I++ + FA Y FNKSHAAAYAV++YQT Sbjct: 704 IDAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVVAYQT 763 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K +YPVEF+AA MT +DN K+ ++ RQ I+++ P +N F + I Sbjct: 764 AYLKYYYPVEFMAALMTSVIDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATKDGIR 823 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y + AIK +G I+ E A+ + +L DF SRV +++N+R +E+L+ AGA D Sbjct: 824 YGMYAIKSIGRQVIDIILAEREANGKYTTLSDFLSRVAGREVNKRAVENLIKAGACDGLD 883 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEKFSVENSSV 950 +R Q+L + + +KN ++F EK + + +E+++ E + Sbjct: 884 GNRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLVSEEEKKAYEVRFPNVEEYTKE---I 940 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY--------EESVATIRGN-NIRLAAMV 1001 + E+ VLG Y SGHPL+ Y+ RK I E + I+ N ++ + ++ Sbjct: 941 KLGFEKEVLGIYLSGHPLEEYEEKWRK-NISAVTADFMLDEETNAVKIKDNQSVVIGGII 999 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K K T++ + ++T + E FP Sbjct: 1000 TEKTIKYTKQNKAMAFITVEDLFGTVEVIIFP 1031 >gi|167753692|ref|ZP_02425819.1| hypothetical protein ALIPUT_01973 [Alistipes putredinis DSM 17216] gi|167658317|gb|EDS02447.1| hypothetical protein ALIPUT_01973 [Alistipes putredinis DSM 17216] Length = 1287 Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust. Identities = 368/1102 (33%), Positives = 583/1102 (52%), Gaps = 88/1102 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL VH+ YS+L+GA +++ ++ + A A+AITD N++ F A AGI+ Sbjct: 70 PDFVHLHVHTQYSILDGAAAISPLIKRAKALGMKALAITDHGNMYGVKNFHDVATDAGIK 129 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127 PI+GC+ + +++ + K ++LL GY L ++VS Y +G Sbjct: 130 PILGCETYV-VRNRFEKDKDEKAG----DHLILLAKNLTGYHNLCKIVS--YSFTEGFYY 182 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI L++ EGLI + G + +A N + AE+ + FK +FGD Y+ LQ Sbjct: 183 KPRIDKKLLEQY-HEGLICCSACLGGEVPQAIMRNDMEEAEQVVRWFKSIFGDDYYLELQ 241 Query: 188 RHRGYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 H D +++ V ++L+ + + +N+ F+ ED AHD L+ + Sbjct: 242 LHPSGDPRKDADVYENQLLVNKALLELSAKCGVKYICSNDVHFILAEDAVAHDHLICLNT 301 Query: 237 STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-------------- 282 + +R R T YLK+ EM +F D PEAL T+EIA + Sbjct: 302 GRDLDDPNRMRYTFQEYLKSPEEMAQLFPDHPEALATTLEIADKVEEYKLTHAPLMPNFP 361 Query: 283 FILQVHAPI------LPRFIEKE--------CDDIQK-----EEENELRNKAVAGLEVRL 323 + H P L + IE + C +++ EE E K + + Sbjct: 362 PPPEFHMPFEELRESLVKKIEDQEELARIDACHSVEELDAWAEESKERSEKLMTAKQFCY 421 Query: 324 AQGAIAKGYH-------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 + KG H +++ +R+ +EL+ I M F GYFLIV D+I+ A++ + VGP Sbjct: 422 LKDLTYKGAHLRYGAELSEEVEKRIRYELSTIEWMGFPGYFLIVWDYIRAAREMGVSVGP 481 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGS AGSV AY L IT+IDPL++ LLFERFLNP+R+S+PD D+DF +D RD+V+ Y + Sbjct: 482 GRGSAAGSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRDDVLHYCVH 541 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 KYG +RVAQI+TFG++ K A+RDV R ++ S+ DRL KL+P+ D Sbjct: 542 KYGQKRVAQIVTFGTMAPKLAIRDVARVQKLALSESDRLAKLVPDKVTPDKKAGETPFDF 601 Query: 497 RFRE-----ARLADPS--VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 ++E A P+ + L+ ++KLEG R HA G++IG L PM Sbjct: 602 CYKESPELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLENFAPMAIAK 661 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608 +DL V +F K +E GLIK DFLGL+TL++++ ++ + G+ VD+ IP DD T Sbjct: 662 DADLNVVEFEGKEVESVGLIKMDFLGLRTLSIIKDAVTNVKNVHGIDVDIDNIPLDDAPT 721 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y + + T G+FQ ES GM++ L ++P+ ED+IA+ +LYRPGP++ I + RK+G Sbjct: 722 YEVFSRGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPMEYIPNFIARKHGL 781 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E + ++ L +T G+ +YQEQVM ++Q L+G++ EAD LR+AMGKK + +DK Sbjct: 782 EPVTYDIADMEEYLSDTYGITVYQEQVMLLSQKLAGFTGGEADTLRKAMGKKQRAVLDKM 841 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 K +FI G SK G I I+ FA Y FNKSH+ YA I+YQT ++K HYP EF+ Sbjct: 842 KPKFIEGCSKRGHDAKICEKIWGDWEAFASYAFNKSHSTCYAYIAYQTGYLKAHYPSEFM 901 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---KVGDNRIYYSLAAIKGV 845 AA ++ + ++++I + + ++ I+++ P +N +F K GD R + LAA+KGV Sbjct: 902 AALLSRNLSDIKQITLYMNECKRMGIRVLGPDINESLNNFSSNKAGDVR--FGLAAVKGV 959 Query: 846 GTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903 G I+ E + + F + DF RV+ +NR+ LE++ +AG D G+ R + Sbjct: 960 GEAAVESIVAERNKNGKFKDIYDFFERVNYTAVNRKCLENIAYAGGFDSISGFHRCKFFG 1019 Query: 904 S----------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-F 952 + ++ + +Y Q + + N +++F +G + + + S++ Sbjct: 1020 TDLRDSSSTTFIEQLVRYGQRFQSEKDNAQQSLFGGGEGVVDIQHPVIPACQDWSTLETL 1079 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTR 1010 E+ ++G Y S HPLD Y I+R M +++ ++RG I +A MV++ Q T+ Sbjct: 1080 GKEREMIGLYLSAHPLDDYAVIIRNMCKTQLSDLDNLESLRGQEIAVAGMVIATQNLVTK 1139 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 G G T + +E F Sbjct: 1140 TGKPWGKFTLEDYNGTHEFALF 1161 >gi|296269404|ref|YP_003652036.1| DNA polymerase III subunit alpha [Thermobispora bispora DSM 43833] gi|296092191|gb|ADG88143.1| DNA polymerase III, alpha subunit [Thermobispora bispora DSM 43833] Length = 1174 Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust. Identities = 388/1074 (36%), Positives = 575/1074 (53%), Gaps = 75/1074 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA L + + PAIAITD NL + +F ++A AAGI+P Sbjct: 4 SFVHLHVHTEYSMLDGAARLKQMFKLVGELGMPAIAITDHGNLHGSYDFYKQATAAGIKP 63 Query: 70 IIGCQLDIDMQDNL------------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 IIG + + + + + F T + + G LI+L S Sbjct: 64 IIGIEAYVAPESRFNKQPVLWGEPHQRGDDVSAGGFYT--HLTIWARNKTGLHNLIKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 R Y ++ R+ L E EGL+ TG SG + A K ++++ Sbjct: 122 RAYTEGFVRKWARMDAELLAE-HAEGLMASTGCPSGEVQTRLRLGQYDEALKAAAKYQEI 180 Query: 178 FG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 FG + Y+ L H G D R +V++ T LP V TN+S + + D HD L+ + Sbjct: 181 FGKENFYLELMDH-GLDIERRVRDDLVRIGRTLGLPPVVTNDSHYTYQSDAAGHDALLCI 239 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSI-FSDL-PEALENTVEIARRCSFI-LQVHAP 290 ++ DR R ++Y+K EM ++ SDL E NT+ IA + + Sbjct: 240 QTGKQLNDPDRFRFEGTEYYIKTPEEMRALDSSDLWQEGCRNTLAIAEKVDPTGFFEYKN 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 ++P F E K EE R K G+ R G ++R+ ++ E++VI + Sbjct: 300 LMPTFPIPEG----KTEEEYFREKVWEGMRRRFPDGV------DDEHRELVEKEISVIVQ 349 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DP+ L+FERFLNP Sbjct: 350 MGFPSYFLVVADFIMWAKNNGIRVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNP 409 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPD D+DF + RR +VIRYV K+G ++VA I TFG+++AKAA++D R L PY+ Sbjct: 410 ERVSMPDIDVDFDERRRADVIRYVTEKWGADKVAMIATFGTIKAKAAIKDAARVLGYPYA 469 Query: 471 QVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517 DR+ K P DP HP +A R+ DP V +++ + Sbjct: 470 LGDRITKAFPPAVMGKDIPLSGIFDPEHPRYHEA----GELRKMYEEDPDVKAAIDLGRG 525 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R HAAG+++ PL+ +P+ R +TQF+ E GL+K DFLGL+ Sbjct: 526 LEGLIRQTGVHAAGVIMSSEPLTDHIPIMRRDSDGAIITQFDYPTCEALGLLKMDFLGLR 585 Query: 578 TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ L + A G K+DL +P DD +TY LL TLGIFQL+ GMR L M+ Sbjct: 586 NLTIIDDCLKMIEANTGEKIDLLELPLDDAKTYELLARGDTLGIFQLDGGGMRSLLRLMK 645 Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690 PD EDI A ++LYRPGP+ ++ + Y RKNG+++I IHP ++ LK+ T G+I+ Sbjct: 646 PDNFEDISAALALYRPGPMGANSHINYALRKNGQQEITPIHPELEEPLKDILSTTYGLIV 705 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM IAQ ++ Y+L AD+LRRAMGKK KEE+D+Q E F G +NG S ++ Sbjct: 706 YQEQVMAIAQKVANYTLGGADLLRRAMGKKKKEELDRQFEFFEKGMKENGFSDEAIRALW 765 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L F+DY FNK+H AAY ++SY TA++K +YP E++AA +T D+ +K + + R Sbjct: 766 DILVPFSDYAFNKAHTAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSALYLNECR 825 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFC 869 + I+++PP VN DF I + L+A++ VG I++A +K F DF Sbjct: 826 RMGIKVLPPDVNDSDFDFTPRGGDIRFGLSAVRNVGANVVDGIIKARKEKGRFTDFADFL 885 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +V ++ N+RV+ESL+ AGA D G+ R L + ++KN +++F Sbjct: 886 RKVPAQVCNKRVIESLIKAGAFDSLGHERKGLFMIHEQAVDAVIDIKKNEAIGQDSLFGA 945 Query: 930 EKG----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 +G TF ++ ++ + + ++FE E +LG Y S HPL + IL G + Sbjct: 946 VEGAEDTTFDVQVPPGEWD-KRTLLQFERE--MLGLYVSDHPLLGVEHIL----AAGSDC 998 Query: 986 SVATIR------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 S+A ++ G + + ++ Q+K T+KG T + E FP Sbjct: 999 SIAALQDESHPDGQVVTVGGILSGLQRKITKKGDTWVLATLEDLEGSIEVMIFP 1052 >gi|28493477|ref|NP_787638.1| DNA polymerase III subunit alpha [Tropheryma whipplei str. Twist] gi|28476519|gb|AAO44607.1| DNA polymerase III alpha chain [Tropheryma whipplei str. Twist] Length = 1164 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 391/1053 (37%), Positives = 568/1053 (53%), Gaps = 59/1053 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA +++ K A D+ PAIAITD N F A +F + A I P Sbjct: 6 SFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWKTAKTYDINP 65 Query: 70 IIGCQLDIDMQDNLK------MTNQGK---TPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 IIG + + N K + G + + LL EG L +L S + Sbjct: 66 IIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHNLFKL-SSLA 124 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 ++ RI + L + + GLI TG SG I A + + +FG Sbjct: 125 SIEGYYFKPRIDIELLNQY-SNGLIATTGCPSGEIQTRLRLGQYSEARQAAAQMRDIFGP 183 Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y + H ++ +++LA LPL+ATN+ +++ ED +H L+ V + Sbjct: 184 ENYYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHAALLCVQSGS 243 Query: 239 VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 ++ +R + D YLK+ SEM +F DLPEA +NT+ +A RC +PRF Sbjct: 244 TINDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQRSFMPRFSV 303 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E + E + ++ G+ R G ++ ++ ++E+ V+ ++GYF Sbjct: 304 PEGE----TENSWFASEVKRGIASRYPNGP------SRRVIEQAEYEIRVVQEAGYAGYF 353 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N I VGPGRGSGA S+ AYA+ ITD+DPL L+FERFLNP R+SMPD Sbjct: 354 LIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFLNPARISMPD 413 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDF + RR EVI YV KYG + VAQI+TF +++AK AL+D R L PYS +RL K Sbjct: 414 FDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYPYSFGERLTK 473 Query: 478 LIPNDPA---HPVSLQAIADD--SRFREARL------ADPSVDRLLEISQKLEGLYRHAS 526 +P PA + L+AI D SR REA +D + ++ ++ LE L R + Sbjct: 474 AMP--PAVMGREIPLRAIFDTTHSRHREASEVRQMIESDYEMQQIFNTAKGLENLKRQWA 531 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HAAG+++ D P+ ++P+ + VTQF+ E GL+K DFLGL+ LT++ +L Sbjct: 532 VHAAGVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNLTIIDDAL 591 Query: 587 DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + Q + KVDL +P DD E Y LL TLG+FQL+S +RQ LE MQPD +DI A Sbjct: 592 ANIRQNKNTKVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPDSFDDISA 651 Query: 646 LVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQVMQIA 699 ++LYRPGP+ + Y RKN K++I IHP + +L T G+I+YQEQV+ IA Sbjct: 652 AIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGLIVYQEQVIGIA 711 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q L+G++L EADVLR AMGKK K+E+D+Q +F +G K G S ++ +L F+DY Sbjct: 712 QKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNVLLPFSDY 771 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+HA AY +ISY TA++K HYP E++AA +T + +K+ + Q+ R I+++ P Sbjct: 772 AFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHMCIKVLLP 831 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879 +N F I + L AIK VG I+E D PF SL DF R+ LNR Sbjct: 832 DINVSRSGFTPSGENILFGLGAIKNVGANLIDDILEVREDGPFVSLIDFVQRMPHSVLNR 891 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R + SL+ AGA D +R +SL +I + +E + N + + G + Sbjct: 892 RSVMSLIQAGAFDSIHPNR----RSLMDIHRSV--LENCQANARRSDVSLLDGLLDE--- 942 Query: 940 LEKFSVE-----NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 E FS ++ R + E+ +LG Y S HPLD + L K E ++ + Sbjct: 943 YEGFSPPDIPDWDNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQDV 1002 Query: 995 IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKE 1026 IR+A ++ S + K R+ G R + + E Sbjct: 1003 IRVAGLITSVEHKVARRTGMRYAHAILEDTSGE 1035 >gi|313677443|ref|YP_004055439.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126] gi|312944141|gb|ADR23331.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126] Length = 1433 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 371/1070 (34%), Positives = 583/1070 (54%), Gaps = 76/1070 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL H+ +S+L+ + ++++K PAIA+TD N+ A F + A AGI+P Sbjct: 245 NFVHLHCHTQFSILQSTTEIPSMVNKAKEMGMPAIAMTDHGNMMGAYNFVRDANKAGIKP 304 Query: 70 IIGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+GC+ + ++N K + G F TV LL GY L +L S ++ +G Sbjct: 305 IVGCEYFLTQDRNNKKNKDDG---FQTV----LLAKNKAGYHNLAKLSSIAFV--EGFYY 355 Query: 129 V-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 V RI L + E +I TGG G + AE+ L +K+ FGD YV L Sbjct: 356 VPRIDREALVQY-KENIIATTGGLWGEVPFLILNAGEAQAEEAFLWWKEQFGDDFYVELN 414 Query: 188 RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 +H + + ++V+ + A +++ A NN+ + ++ED EA D+L+ V ++ +P Sbjct: 415 QHGVPEEQKVNEVLLKFAKKYDVKYFAANNTYYTNKEDAEAQDILLCVKDGETTGEQGKP 474 Query: 247 R--------------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + + Y+K+ EM +F+D PEA+ T EIA + +L Sbjct: 475 KKYVGKRGREYRFGLPNDEFYIKSPDEMKKLFADYPEAIACTAEIAEKIEGFELARDVLL 534 Query: 293 PRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIA 349 P++ I +E D K+ EN A L +GA K Y + ++RLDFEL I Sbjct: 535 PKYDIPQEFID-PKDAENGGNRGENAYLRHITYEGA-KKRYPEITAEIKERLDFELETIE 592 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 R + GYFLIV DF A++ + VGPGRGS AGS AY IT+IDP+++ LLFERFLN Sbjct: 593 RTGYPGYFLIVQDFTTAAREMGVSVGPGRGSAAGSAVAYCTAITNIDPIKYDLLFERFLN 652 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+S+PD DIDF R +VI YV KYG +VAQI T+G++ AK+A+RD R +++P Sbjct: 653 PDRVSLPDIDIDFDDHGRQKVIDYVIEKYGANQVAQITTYGTMAAKSAIRDTARVMELPL 712 Query: 470 SQVDRLCKLIPNDPAHPVSLQAI---ADDSRFREARL------------------ADPSV 508 DR+ KL+P+ + L+A+ A D + A+L A+ + Sbjct: 713 MDADRIAKLVPD-----IKLKALFDLASDKKKLSAKLKNNGEAISKAEELLNLAKANDAS 767 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 +++ ++ LEG R+ HA G++I +++ VP+ SD+ TQF+ +E AGL Sbjct: 768 AKVINQARVLEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDMYCTQFDNAVVENAGL 827 Query: 569 IKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 +K DFLGLKTLTL++ ++ + +R GVK+D P DD +TY L T+GIFQ ES G Sbjct: 828 LKMDFLGLKTLTLIKDAVRIVEERHGVKLDPDEFPIDDPKTYELFQKGETVGIFQYESPG 887 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 M++ L ++P D+IA+ +LYRPGP++ I + RKNG E+I P ++ L+ET G Sbjct: 888 MQKYLRDLKPTEFSDLIAMNALYRPGPLEYIPNFVKRKNGLEEISYDLPEMEEYLQETYG 947 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 + +YQEQVM ++Q L+G++ EADVLR+AMGKKI +++ K +FI+ ++ G K + Sbjct: 948 ITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKIFALLEELKPKFINQGAEKGHPKDVLE 1007 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 I++ FA Y FNKSH+ YA ++YQTA++K HYP E++A+ ++ M + + F + Sbjct: 1008 KIWKDWEAFAAYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMASVLSNNMGQITDVTFFME 1067 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSL 865 + ++ I+++ P VN F V DN +I + LAAIKG G+ I+ E ++ + + Sbjct: 1068 ECKRAGIEVLGPDVNESNSGFTVNDNGQIRFGLAAIKGAGSAAVESIIQERKSNGQYKDI 1127 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWVEK 917 DF R+ K +N++ ESL AG DCF Y R Q L S ++ I KYAQ ++ Sbjct: 1128 FDFAERIPLKSVNKKTFESLAMAGGFDCFKEYHRKQFLASDNGEGTLIEKIIKYAQKLQH 1187 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + + ++F E G + + + + E+ V+G + SGHPLD Y+ + Sbjct: 1188 EKDSAQTSLFGGEGGVAIPPPRVAEMEPYSELEKLNIEKEVVGLFISGHPLDEYRFEMES 1247 Query: 978 MGIKGYE-----ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 ES+A+ N I++ +V + ++T+ G G +T + Sbjct: 1248 FCNTQVSELNDIESLAS--KNEIKVGGIVTAVAHRQTKTGKPFGTLTLED 1295 >gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755] gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755] Length = 1452 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 369/1071 (34%), Positives = 581/1071 (54%), Gaps = 83/1071 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58 SFVHL H+ +S+L+ +++ +++ A PA+AITD N+ A F Sbjct: 261 SFVHLHNHTQFSVLQSTMAVPDLVAAAAKHNMPAVAITDHANMMGAFHFVNAVKKHNSAI 320 Query: 59 --SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 + + I+PIIGC+ + +D+ T++ +V+L +GY L ++ Sbjct: 321 ANDSENTSQPIKPIIGCEFFV-CEDHTDRTHKDNGY-----QMVILAKNKKGYHNLAKMS 374 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S + +G + L E + LI+L+G G I AE+ L+ +K+ Sbjct: 375 SMGFT--KGFYYIPRIDKKLIETYKDDLIVLSGSLYGEIASKLLNLGENQAEESLVWWKE 432 Query: 177 LFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FGD YV + RH+ D R ++ +++LA H++ LVATNN+ + ++D AHD+L+ V Sbjct: 433 TFGDDFYVEIMRHQQEDEERANEALIRLANKHDINLVATNNTYYADQKDANAHDILLCVK 492 Query: 236 ----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 +T + + R +Y K+ EM S+F DLP+A+ NT IA + Sbjct: 493 EGEKQATPIGRGRGYRYGLPNDQYYFKSAEEMKSLFKDLPQAISNTEAIANKVEAFELAR 552 Query: 289 APILPRFI-------EKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 +LP F+ E + D K EN L++ G + R G +++ + R Sbjct: 553 EVLLPAFVIPEQFLDEADKTDAGKRGENAYLKHLTFEGAKRRY-------GELSEEIKDR 605 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 LDFEL+VIA + GYFLIV DFI+ A+K + VGPGRGS AGS AY L IT+IDP+++ Sbjct: 606 LDFELSVIANTGYPGYFLIVEDFIREARKMGVSVGPGRGSAAGSAVAYCLKITNIDPIKY 665 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R+SMPD DIDF + R +V+ YV KYG +VAQIIT+G++ AK+A+RD Sbjct: 666 DLLFERFLNPERVSMPDIDIDFDDEGRSKVMDYVIEKYGQNQVAQIITYGTMAAKSAIRD 725 Query: 461 VGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDSRFREARLADPSVDRLLEI---- 514 R L +P + DR+ KLIP+ S+ +FR VD++LE+ Sbjct: 726 TARVLDLPLYEADRIAKLIPDMSKLGKIFSMNEKEIRKKFRSEE-----VDKVLELIAIS 780 Query: 515 ------------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562 ++ LEG R+ HA G++I +++ VP+ S+L VTQF+ Sbjct: 781 EQDSPEAETVNQARILEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSNLYVTQFDNSV 840 Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621 +E AGL+K DFLGLKTLTL++ +++ + A+ V +D P DD +TY L T+GIF Sbjct: 841 VEDAGLLKMDFLGLKTLTLIKDTVEIVKARHEVDLDPEAFPLDDEKTYELFQRGETVGIF 900 Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681 Q ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RK+G+E I P + Sbjct: 901 QYESLGMQKHMKDLKPTVFGDLIAMNALYRPGPMEYIPSFIKRKHGEEDISYDLPEMQEY 960 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L+ET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK+K+ + K K +FI+ A NG Sbjct: 961 LEETYGITVYQEQVMLLSQKLASFTKGEADVLRKAMGKKLKDVLAKLKPKFINQAKDNGH 1020 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 ++ I++ FA Y FNKSH+ YA ++YQTA++K HYP E++AA ++ M +++K Sbjct: 1021 NEEKLEKIWKDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLSNNMSDIKK 1080 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADK 860 + F ++ ++ + ++ P VN F V D+ + + + AIKGVG I+E Sbjct: 1081 VSFFMEECKRMRLPVLGPDVNESYYKFSVNKDDAVRFGMGAIKGVGGGAVNTIVEHRKKG 1140 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYA 912 + S+ D R+D + N++ ESL +AGA D G R Q Q+ L+ + KYA Sbjct: 1141 HYLSIFDLSKRIDLRAANKKAFESLAYAGAFDSLGEVHRAQYFQATDGDLTFLEKVIKYA 1200 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 ++N+ + ++F + + +S + E+ V+G + SGHPLD +K Sbjct: 1201 ARYQENKNSSQVSLFGESSEVQIPEPEVPPCEPWHSMRTLKAEKEVVGLFLSGHPLDDFK 1260 Query: 973 PILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 + +E VA I + + LA +V K ++ G G+ TF Sbjct: 1261 LEINSFCRSNLKE-VAEIENHLNKELSLAGVVTDVNHKVSKTGK--GFATF 1308 >gi|86130781|ref|ZP_01049380.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134] gi|85818192|gb|EAQ39352.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134] Length = 1463 Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust. Identities = 371/1078 (34%), Positives = 570/1078 (52%), Gaps = 87/1078 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 F HL HS +S+L+ S+ +I+ AA + PA+A+TD N+ A F++ Sbjct: 262 FAHLHNHSQFSILQSTASVQDIVKAAAAQKMPAVAMTDMGNMMGAFHFTKAVKSHNAGVK 321 Query: 61 KACAAGIQP-----------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 KA AA ++ IIGC+ N+ + ++ K+ IV+L GY Sbjct: 322 KANAAAVEAGEDPEGVPLKAIIGCEF------NVCVDHKNKSQKDNGYQIVILAKNKNGY 375 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 Q L ++ S Y D RI + + + + LI+LTG G + AE+ Sbjct: 376 QNLCKMASIAYT-DGFYYVPRIDRNVIMQY-RDDLIVLTGNLYGEVPSKILNVGENQAEE 433 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAH 228 L+ +K+ FGD LY+ L RH D R V + L+ H + VA+NN+ ++ + D +AH Sbjct: 434 ALIWWKEQFGDDLYIELMRHGQEDEDRVMPVLIALSRKHNIKTVASNNTFYIDKSDADAH 493 Query: 229 DVLMAVAHS-TVVSQKDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 DVL+ V V + K R R ++Y K+ EM +F+D+PEA+ N E+ + Sbjct: 494 DVLLCVKDGEKVATPKGRGRGYRYGLPNDEYYFKSGEEMKILFADVPEAILNVQEVVDKI 553 Query: 282 SFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 +LP F E D ++ E LR+ G + R + Sbjct: 554 EPYELARDVLLPAFDIPQEFVSPEDAIDGGKRGENAFLRHLVYEGAKKRYGEEL------ 607 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 +++ +RLDFEL+VI + + GYFLIV DFI+ A+ ++ VGPGRGS AGSV AY L IT Sbjct: 608 SEEVTERLDFELDVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVAAYCLWIT 667 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 +IDP+++ LLFERFLNPDR+SMPD DIDF + R V++YV +KYG +VAQIIT+G++ Sbjct: 668 NIDPMKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGANQVAQIITYGTMA 727 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLAD--PSVD 509 AK+++RD RAL + DR+ KLIP L+ I D+ R + +D P V Sbjct: 728 AKSSIRDTSRALDLSLGDADRIAKLIPT----MSKLRKIFGKTDAELRSSFRSDDLPKVQ 783 Query: 510 RLLEI-------------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 L+ I +++LEG R+ HA G++I ++ VP+ SDL VT Sbjct: 784 ELINIETQDNLEGQMLRQARQLEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLYVT 843 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615 QF+ +E+AGL+K DFLGLKTLTL++ ++ + R V +D P DD +TY L Sbjct: 844 QFDNSVVEEAGLLKMDFLGLKTLTLIKDTVKLVKYRHNVDLDPENFPLDDEKTYELFQRG 903 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675 T+GIFQ ES GM++ ++ ++P ED+IA+ +LYRPGP++ I + RK+G+E+I Sbjct: 904 DTVGIFQYESPGMQKHMQSLKPTVFEDLIAMNALYRPGPMEYIPSFVRRKHGEEEIEYDL 963 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 P ++ LKET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK +DK K +FI Sbjct: 964 PAMEEYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQ 1023 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 AS G I++ FA Y FNKSH+ YA I+YQTA++K HYP E+LAA ++ Sbjct: 1024 ASAKGHDPEKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYLAAVLSNN 1083 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM 854 M++++++ F ++A++ ++++ P VN F V DN + + + A+KGVGT I+ Sbjct: 1084 MNDIKQVTFFMEEAKRMGLEVLGPDVNESFRKFTVNDNGAVRFGMGAVKGVGTGAVATIV 1143 Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQS-------L 905 E D + S+ DF RVD + N++ ESL AG D R Q L Sbjct: 1144 ENRKDGKYKSVFDFARRVDLRAANKKAFESLALAGGFDELDGDTHRAQFFNDNGDGITFL 1203 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + KY ++N + ++F + + + + + E+ V+G Y SG Sbjct: 1204 EKAVKYGARYQENENSSQVSLFGESSEVQIPEPEVPPCEEWGTMEKLKREKEVVGVYISG 1263 Query: 966 HPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 HPLD +K + + + + ++ Q + ++ G GW F+ Sbjct: 1264 HPLDDFKTEMETFCNATVAHFNQMEAFVNRELTFGGVITDVQHRVSKNGK--GWAAFT 1319 >gi|89890044|ref|ZP_01201555.1| DNA polymerase III [Flavobacteria bacterium BBFL7] gi|89518317|gb|EAS20973.1| DNA polymerase III [Flavobacteria bacterium BBFL7] Length = 1450 Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust. Identities = 371/1073 (34%), Positives = 574/1073 (53%), Gaps = 67/1073 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 F HL HS +S+L+ S+ +++ A + A+A+TD N+ A F + A Sbjct: 257 FAHLHSHSQFSILQSTASVQDLVKAAAVNDMSAVAMTDHANMMGAFHFVKAVKAHNASLV 316 Query: 67 -----------IQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 ++P+IGC+ + DM D N + IVLL GY + Sbjct: 317 NDDDNELQKKPLKPVIGCEFFVCEDMNDKSHKDNGYQ--------IVLLAKNKNGYLNIA 368 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 ++ S+ Y+ D RI +QE E +I+LTG G + AE+ LL Sbjct: 369 KMSSKAYV-DGFYYVPRIDKKLIQEF-KEDVIVLTGNMYGEVPSKILNIGENQAEEALLW 426 Query: 174 FKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +K+ FGD LYV + RH D R ++V + L+ H + +VATNN+ ++ +ED AHD+L+ Sbjct: 427 WKEEFGDDLYVEIMRHGQEDEDRANEVLISLSRKHNVKMVATNNTYYIHKEDANAHDILL 486 Query: 233 AVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 V +T + + R ++Y K+ +EM +F DLPEA+ N E+ + Sbjct: 487 CVKDGEKQATPIGRGRGYRYGLPNQEYYYKSATEMKLLFKDLPEAILNISEVLDKIEPFE 546 Query: 286 QVHAPILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 +LP+F I ++ D Q E +NE R + + I G + +RLDFE Sbjct: 547 LARDVLLPKFDIPEQFLDAQDEHDNEKRGENAYLRHLTYEGAKIRYGEITPEIEERLDFE 606 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 L I + + GYFLI DFI+ A+ ++ VGPGRGS AGSV AY L IT++DP+ + LLF Sbjct: 607 LETIRKTGYPGYFLITWDFIKAARDMDVAVGPGRGSAAGSVVAYCLWITNVDPIHYDLLF 666 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNPDR+SMPD DIDF + R +V+ YV KYG +VAQIIT+G++ AK+++RD RA Sbjct: 667 ERFLNPDRVSMPDIDIDFDDENRYKVMDYVIEKYGASQVAQIITYGTMAAKSSIRDTARA 726 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADD---SRFR--------EARLADPSVDRLLE 513 L +P ++ D + KLIP D + + A+ D+ S+FR E R D E Sbjct: 727 LDLPLNEADHIAKLIP-DFSKLKKIFALEDNEVRSKFRGEDADMVEELRGIAAGSDLAAE 785 Query: 514 ISQK---LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 ++ LEG R+ HA G++I PL+ VP+ SDL VTQF+ + +E AGL+K Sbjct: 786 TLRQARILEGSVRNTGVHACGVIITPAPLTNFVPVATAKNSDLYVTQFDNEVVESAGLLK 845 Query: 571 FDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 DFLGLKTL+ ++ ++ + +R + +D+ IP DD +TY L T+GIFQ ES+GM+ Sbjct: 846 MDFLGLKTLSQIKDTVAIIKERHHIDLDIESIPLDDAKTYELFQEGKTVGIFQYESAGMQ 905 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + + ++P D+IA+ +LYRPGP++ I + +RK+G ++I ++ L ET G+ Sbjct: 906 KYMRDLKPTQFADLIAMNALYRPGPLEYIPDFIDRKHGVKEISYDLDGMEEYLSETYGIT 965 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVM ++Q L+ +S EADVLR+AMGKK + K K +F+ NG + I + Sbjct: 966 VYQEQVMLLSQKLANFSKGEADVLRKAMGKKQMATLQKMKPKFLDNGESNGHDREILEKV 1025 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++ FA Y FNKSH+ YA I YQTA++K +YP EF+AA+++ M+ ++ + KF + Sbjct: 1026 WKDWEAFASYAFNKSHSTCYAWIGYQTAYLKANYPAEFMAATLSNNMNQIKDVTKFMDEC 1085 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868 + + ++ P VN F V + + + + A+KG+G I+E D P+ S+ D Sbjct: 1086 KHMGLPVLGPDVNESNYKFTVNKHGAVRFGMGAVKGLGHGAVMTIIENRKDGPYKSIFDM 1145 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQSLDNIQ-------KYAQWVEKNRT 920 R+D + N++ E+L +G D G +R Q DN Q KYAQ ++N Sbjct: 1146 AKRIDLRAANKKSFEALALSGGFDGLGGENRAQYFHQSDNGQIFLEQVVKYAQKYQENEN 1205 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 + ++F + L + + + E+ V+G Y SGHPLD YK + Sbjct: 1206 SAQVSLFGEASDVQIPEPELPICEDWGTMEKLKREKEVVGIYISGHPLDDYKKEMEFFCN 1265 Query: 981 KGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 G S+ + G N V+S Q + K ++ GW F+ ++YE +F Sbjct: 1266 TGL-SSLKDLHGLVNRDLTFCGVISDVQHRITKTNK-GWGMFT--VEDYEDSF 1314 >gi|284045058|ref|YP_003395398.1| DNA polymerase III subunit alpha [Conexibacter woesei DSM 14684] gi|283949279|gb|ADB52023.1| DNA polymerase III, alpha subunit [Conexibacter woesei DSM 14684] Length = 1178 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 365/1041 (35%), Positives = 567/1041 (54%), Gaps = 48/1041 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + HL VHS YSLL+GA ++ + + AA QPA+ +TD + ++E + I+P Sbjct: 8 ACAHLHVHSEYSLLDGACKIDALAARAAAFDQPALGLTDHGVMNGSVEMYKACKKHDIKP 67 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQ 127 ++GC++ + + + + + LL GY+ L++L S YL L +GK Sbjct: 68 LLGCEVYVVDDRHFRAGRAERN------HLTLLAQNDVGYRNLVKLSSTGYLEGLHRGKP 121 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 V + +EG+I LTG + + + A + +FG +++Y + Sbjct: 122 GVDF---EIMSQHSEGIIALTGCLASRFCQRLVNDRPDEARAHVDDLMNIFGREQVYFEV 178 Query: 187 QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q++ D+ + ++ +V++A PLV T + +L EDY H L+ V + +++ Sbjct: 179 QKNGIADQDKANEGIVRIAREVGRPLVGTGDVHYLRREDYHHHTALLCVQTKSTLAEPKM 238 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 T + YLK+ EM F++ P+AL T+E+A RC QV P+ + I + Sbjct: 239 TFDTNEFYLKSNQEMADAFAEWPDALPTTLEVAERC----QVEIPLGGQLIPSYPTPNGE 294 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 EE LR + GL +R A +R++ EL VI +M F+ YFLIV DF++ Sbjct: 295 EERAYLRQLVLDGLHLRYGNPPPAAAV------ERMEMELAVIDKMGFNAYFLIVWDFVR 348 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 ++K+N + VGPGRGS AGS+ AY L ITD+DPL + LLFERFLNP+R+SMPD DIDF Sbjct: 349 YSKENGVAVGPGRGSAAGSIVAYCLAITDVDPLAYDLLFERFLNPERVSMPDIDIDFSVR 408 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483 R+ VIRYV KYG E VAQIITFG + +AA RD R L Y D+L KLIP DP Sbjct: 409 GRERVIRYVTEKYGRESVAQIITFGKMFPRAATRDAARVLGHDYGAGDKLAKLIP-DPIM 467 Query: 484 AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P S + R ++P +++++++ LEG+ R++S HAA +VI DRPL+ + Sbjct: 468 GRPPSFDDCLQPGEPLRGEVDSNPVSRQIVDVARGLEGIVRNSSIHAAAVVIADRPLTDI 527 Query: 543 VPMY-----RDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G 593 VP+ D R D VTQ++MK +E+ GL+K DFLGL+ L +++ +LD + + G Sbjct: 528 VPLQLADAGTDDRGDKVYRTVTQYSMKPVEELGLLKMDFLGLRNLDVIEDALDIIERSTG 587 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + D++ +P DD +TY ++ ++G+FQ ES GMR+ L+ ++P +ED+IAL +LYRPG Sbjct: 588 TRPDMTTLPLDDGKTYDMIARGDSVGVFQFESEGMRETLKKVRPTELEDLIALNALYRPG 647 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 +D I Y K E I + P+L+ T GVI+YQEQ MQIA+ L+G+S ++AD L Sbjct: 648 AMDQIPTYARGKRNPESISYPDERLRPILESTNGVIVYQEQAMQIAKSLAGFSGAKADDL 707 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 R+A+GKK + M + K FI G + S+ + ++ K ADY FNK+HAA YA+I+ Sbjct: 708 RKAIGKKNRAAMAELKPEFIEGCRASRTSEQVIEWLWATNEKSADYSFNKAHAACYALIA 767 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y+TAW+K ++P E++AA ++ MD +K+ F Q I+I+PP VN DF V D Sbjct: 768 YRTAWLKANHPAEYMAALISSVMDTKDKVPFFVAQTEQMGIEILPPDVNESDHDFMVVDG 827 Query: 834 RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + L A+KGVG I A D PF SL DFC RVD K +N++ +E+L+ GA Sbjct: 828 NIRFGLDAVKGVGYAAVEGIKRAREEDGPFTSLWDFCERVDGKAVNKKAIEALIKCGAFS 887 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSV 950 G SR +L L+ Q Q +++ +IF E G + + + + Sbjct: 888 STGASRKGMLGVLEQAQAAGQKAQQDALIGQGSIFDLGPEPGAANGAAASAFAAPSHPGI 947 Query: 951 RFEN---------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 E E+ +G + S HPL + +R E G+ + + ++ Sbjct: 948 PAEEFDQAEMLAAEKESIGLFISAHPLKAVREAMRVKVDCTLAELSDRKDGDWVTVGGII 1007 Query: 1002 VSKQQKKTRKGSRIGWVTFSE 1022 ++ +T++G + + T + Sbjct: 1008 TQCKRLRTKRGDHMMFATLDD 1028 >gi|145219820|ref|YP_001130529.1| DNA polymerase III, alpha subunit [Prosthecochloris vibrioformis DSM 265] gi|145205984|gb|ABP37027.1| DNA polymerase III, alpha subunit [Chlorobium phaeovibrioides DSM 265] Length = 1187 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 374/1053 (35%), Positives = 569/1053 (54%), Gaps = 62/1053 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YS+ + + + A +IA+TD +F+ E +A +GI+ I Sbjct: 3 FVHLHAHTHYSMQSSPVFPGQLFEAAAKLGMQSIAVTDYGAIFNMPELFSEAEKSGIRLI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I +++ + TP S++LLV GY+ L L+SR Sbjct: 63 IGSE--ILLRETSHHQDGRNTP---ASSLILLVQNDTGYRNLCILLSRAARDGFVDGMPH 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + S +E GL+ L+G SSG I R+ + A + + ++ +FGDR Y+ LQRH Sbjct: 118 LERSLFREFHG-GLVCLSGYSSGRIGRSLLAGAVDDAREHAVFYRDIFGDRFYLELQRHN 176 Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRV 248 +D S + LA + +VATNN +L +D + + + A+ A + SQ Sbjct: 177 SHFDDELNSSTIALAEECGVGVVATNNIHYLERKDSDCYRAMAALKAKQKLSSQNLSALP 236 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +H+LK+ +EM +F D L NTV IA CSF+ + PILP F E +E Sbjct: 237 GSEHFLKSPAEMRELFGDGHGELSNTVFIAESCSFVFREKEPILPHFPLPEG---FADEA 293 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR+ G + + G ++ R R++ EL VI +M FS YFLIV+D I ++ Sbjct: 294 AYLRHLTAEGAKEKYP-GISEDEPSQEEVRDRIELELGVIEKMGFSSYFLIVSDLIAASR 352 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + VGPGRGS AGS+ AY IT IDPLR+ LLFERFLNP+R+SMPD DIDF + Sbjct: 353 RLGYSVGPGRGSAAGSIVAYLTGITRIDPLRYKLLFERFLNPERLSMPDIDIDFTPVGKQ 412 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +V+ Y +YG E VA+++ G+L AKAA+RD R L +P S D+L KL+P P ++ Sbjct: 413 KVLDYTVERYGAESVAKVVAIGTLGAKAAIRDAARVLDVPLSVADQLAKLVPQRPG--IT 470 Query: 489 LQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L+ A+++ +E A P L+ + LEG R+ S HA +VI PL + VP+Y Sbjct: 471 LETALSEVRELKEQAEATPQNRELMTYASALEGRARNVSVHAGAVVITGGPLEEQVPLYV 530 Query: 548 DVRSDLP---------------------------VTQFNMKWIEKAGLIKFDFLGLKTLT 580 R + +TQF+ WIE AGL+K D+LGL+TL Sbjct: 531 SNRIETEARVSLDAIAPEAPQPGKHADPSAGKQVITQFDKNWIETAGLLKIDYLGLETLA 590 Query: 581 LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ ++L + +R V++DL +P D +T+ + GIFQ ESSGM+ + +QP Sbjct: 591 VIDETLQLIRRRHNVEIDLEKVPMTDRKTFRIFQEGKMAGIFQFESSGMQSYMTRLQPTQ 650 Query: 640 IEDIIALVSLYRPGPID-------NIV-VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 I DIIA+ +LYRPG ++ N V ++ +RK+G+E I +HP+++ +LKET GVI+Y Sbjct: 651 IGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREVIDYMHPMLETILKETYGVIVY 710 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQI+Q++ G+SL++AD LR+AMGKK E M++ K F+ GA G+ T+A +FE Sbjct: 711 QEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMERFKVDFVQGAVAQGVHDTLATRVFE 770 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A + E+ + E++K +AR Sbjct: 771 LMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAILNSEIGDTERMKHLTDEARS 830 Query: 812 FNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGV-GTTTARHIMEASADKPFDSLE 866 F I +PPS+N F V ++ I L+AIK V G A + F +L Sbjct: 831 FGIATLPPSINRSDAIFSVEESPDGAAIRVGLSAIKQVGGAAKAIIAARLRRKREFLNLF 890 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 D + VD + +NR+ LE L+ AGA D R +L+ ++D K+ Q ++ Sbjct: 891 DLTASVDQRVMNRKALECLILAGAFDEIDSHRARLIANIDKAIKFGQIENRSAALGQCGF 950 Query: 927 FAHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-IKG 982 F E+G + +E + ++E+R++GFY S HPL ++ + + Sbjct: 951 FTAEEGAVQEDGHYPDMENALQMPEQEKLQHEKRLVGFYLSRHPLSPWRRDWQAFASLHL 1010 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 E V R R+ +VVS + + RKG ++ Sbjct: 1011 NERDVVAQR--QYRIIGLVVSTKPYQDRKGKQM 1041 >gi|289705613|ref|ZP_06502003.1| DNA polymerase III subunit alpha [Micrococcus luteus SK58] gi|289557663|gb|EFD50964.1| DNA polymerase III subunit alpha [Micrococcus luteus SK58] Length = 1198 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 369/1013 (36%), Positives = 549/1013 (54%), Gaps = 68/1013 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL H+ YS+L+GA L+++ + ++AITD LF A +F KA AAG Sbjct: 13 KDGGFVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKAKAAG 72 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFP-------------TVPSIVLLVSTAEGYQRLI 113 ++PIIG + + + T++ KT + + LL T EG L Sbjct: 73 VKPIIGLEAYV-APGHQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLF 131 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 + S L + R+ L + ++GLI TG SG + + A + Sbjct: 132 RMGSIASLDSVYAKWPRLDRELLSQY-SKGLIATTGCPSGEVQTRLRLGQYREAMQAASD 190 Query: 174 FKKLFGDRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 F+ +FG Y H G D R + + +LA LP VATN+ + E D +AH+ L Sbjct: 191 FRDIFGKDNYYCEVMHHGLDIERRVVTDLRRLAKDLGLPFVATNDLHYTHEHDAKAHEAL 250 Query: 232 MAVAHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284 +A+ + +++ + ++YLK+ +M +F++LPEA +NT+ IA RC Sbjct: 251 LALQSGSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVE 310 Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 A +P F E +D E + L + +GL R G R++ D+E Sbjct: 311 FDTKANYMPVFPTPEGED----ETSWLIKEVASGLAYRYPDGV------PDHVRKQADYE 360 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 L+VI M F GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYAL ITD+DPL+ L+F Sbjct: 361 LDVIISMGFPGYFLVVADFINWAKENGIRVGPGRGSGAGSMVAYALRITDLDPLKHGLIF 420 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNPDR+SMPDFD+DF RR EVI YV KYG ERV I+T+G+++ K AL+D R Sbjct: 421 ERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARV 480 Query: 465 LQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRL 511 + P+S + L K +P DPA P +A + FRE DP + Sbjct: 481 MDQPFSMGESLTKALPPAVMAKDIPLKDIEDPAAPRYGEA----APFRELVATDPVAKEV 536 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 E ++ LEGL R HAAG+++ P+ ++P+ R ++ +TQF+ E GLIK Sbjct: 537 FETAKGLEGLKRQWGVHAAGVIMSSAPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKM 596 Query: 572 DFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGL+ LT++ +++ + A +GV +DL + DD Y LL TLG+FQL+ MR Sbjct: 597 DFLGLRNLTIISDAIENVKANQGVDLDLETLDVDDPAAYELLARGDTLGVFQLDGGPMRS 656 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE---- 684 L+ M+PD EDI A ++LYRPGP+ ++ Y RKNG+++I IHP ++ L+E Sbjct: 657 LLKMMRPDNFEDISATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDT 716 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+I+YQEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ E F G G S+ Sbjct: 717 TYGLIVYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEA 776 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 ++++L F+DY FNK+H+AAY ++SY TA++K HYP E++AA +T D+ +K+ Sbjct: 777 AVKALWDILLPFSDYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAM 836 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFD 863 + + R I ++PP VN + F I + + A++ VG + +++ D + Sbjct: 837 YLNECRHMGITVLPPDVNESHLTFTPVGRDIRFGMGAVRNVGANVVKGMVQGREDGGSYT 896 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 DF ++V N+R +ES++ AGA D GY+R LL + A +K + + Sbjct: 897 GFGDFLAKVPLVVCNKRTIESMIKAGAFDSLGYARRALLAVHEEAVD-ATVAQKRKEDHG 955 Query: 924 E---NIFA-----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 E ++FA + +D + + + E+ +LG Y S HPL Sbjct: 956 EFTFDLFALGGNDEDDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPL 1008 >gi|331005660|ref|ZP_08329027.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC1989] gi|330420518|gb|EGG94817.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC1989] Length = 1241 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 321/732 (43%), Positives = 448/732 (61%), Gaps = 38/732 (5%) Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 Q Y RL FEL++I +M F GYFLIV DFIQWAK +IPVGPGRGSGAGS+ AYA ITD Sbjct: 369 QPYLDRLRFELDIIMQMGFPGYFLIVMDFIQWAKDQDIPVGPGRGSGAGSLVAYAQKITD 428 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 +DPL + LLFERFLNP+R+SMPDFDIDFC D RD+VI+YV + YG + V+QIITFG++ A Sbjct: 429 LDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDQVIKYVSDTYGKDAVSQIITFGTMAA 488 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLE 513 KA +RDV R Y D+L K+IP D ++LQ A + RE D + E Sbjct: 489 KAVVRDVARVQGKSYGLADKLSKMIPMDVG--ITLQKAFDQEEPLREFLDGDEEAQEIWE 546 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 +S KLEG+ R+ HA G+VI L+ P++ D VTQ++ +E AGL+KFDF Sbjct: 547 MSLKLEGITRNVGKHAGGVVIAPTKLTDFSPLFCDETGKGLVTQYDKNDVESAGLVKFDF 606 Query: 574 LGLKTLTLLQKSLDFL---------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 LGL+TLT++ ++ + A +D++ IP DD TY +L T T +FQLE Sbjct: 607 LGLRTLTIIDWAVKMINATRKKAAGANSHQVLDIAFIPLDDPATYRMLKTAETTAVFQLE 666 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSI-----HPL 677 S GM+ ++ +QPD IED+ ALV+L+RPGP+ + +V + NRK+G+ ++ H Sbjct: 667 SRGMKDLIKRLQPDDIEDLTALVALFRPGPLQSGMVDDFINRKHGRAEVAYPDAKYQHDK 726 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 + P+L T GVI+YQEQVMQIAQ L+GY+L AD+LRRAMGKK EEM KQ+ F GA Sbjct: 727 LKPILGPTYGVIVYQEQVMQIAQELAGYTLGGADMLRRAMGKKKPEEMAKQRAVFEGGAK 786 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 GI T+A+ IF+L+ KFA YGFNKSH+AAYAV+SYQTAW+KTHYP +F+AA+M+ +MD Sbjct: 787 DQGIDPTLAIKIFDLVEKFAGYGFNKSHSAAYAVVSYQTAWLKTHYPAQFMAATMSSDMD 846 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856 EK+ F ++ R + ++PP VN F V DN I Y L AIKG+G +I+EA Sbjct: 847 KTEKVVIFVEECRSMKLNLLPPDVNQGDFQFTVDIDNNIIYGLGAIKGLGEGPVENIIEA 906 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-----------YSRMQLLQSL 905 PF +L DFCSRVD++K+N+R L++LV +G+ D G +R LL +L Sbjct: 907 RKSGPFKNLFDFCSRVDARKVNKRALDALVRSGSFDTIGPDGDNPERDLDMTRAILLAAL 966 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHE---KGTFSDKITLEKFSVENSSV--RFENEQRVLG 960 K A N+ ++F +G ++ + ++ R E +G Sbjct: 967 PEAVKTADQALANQNAGMVDLFGDSLLGQGDENEDPYESFYRTRRWTMKERLNGENDTIG 1026 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP+D Y+ ++ + VA + I++A +VV+ + KT++G +G++T Sbjct: 1027 LYLTGHPIDEYEDEVKHLVSSRISRIVADRK--TIKIAGLVVAMRVMKTKRGDTMGFITL 1084 Query: 1021 SEPAKEYEANFF 1032 + E F Sbjct: 1085 DDRTARMEVAVF 1096 Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 151/287 (52%), Gaps = 10/287 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +SL++G + + ++ K+A PA+A++D N + ++F A AG++PI Sbjct: 11 FVHLRLHTEFSLVDGTVRIKPLVAKVAEMGMPAVAVSDVCNFYGLIKFYTAAQNAGVKPI 70 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG D M+ + N K PT+ I L GY+ +I L+SR + Q Sbjct: 71 IGA--DFWMRTSGDKENSDK---PTL--ISLYAMNHVGYRNIILLISRAFQEGQYHGDPY 123 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 I W+ E +EG+I L+GG G I A + A L +K F DR Y+ LQR Sbjct: 124 ILREWISEC-SEGVIALSGGRQGDIGVALLSDHRDEAMAYLEGWKADFPDRFYLELQRTG 182 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 R + V LA ++P+VATN+ FL D+EAH+ + + + R R Sbjct: 183 RENEEDYLHAAVALASEQQIPVVATNDVRFLVGSDFEAHESRVCIGEGRTLDDPRREHRY 242 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + YL+ EM +FSD+P+AL NTVEIA+RC+ +++ LP F Sbjct: 243 SDQQYLRTPEEMAELFSDIPQALANTVEIAKRCTVDIELGNYYLPDF 289 >gi|307571155|emb|CAR84334.1| dnaE [Listeria monocytogenes L99] Length = 1095 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 363/1021 (35%), Positives = 581/1021 (56%), Gaps = 49/1021 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L S++ ++ K PA+AITD N L+ +EF QK AA I+PIIG + + +Q Sbjct: 1 MLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPIIG--MTVTIQG 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 L N + ++L+ + GY L+++ S + ++G + + SWL+ + Sbjct: 59 YLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE---LPQSWLRAYSS 107 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQV 200 LI ++ G+ G I+R + A + +FG + +Y++ Q+ + +++ Sbjct: 108 -NLIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQKE---NPRLFAKI 163 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260 + +P+VAT N +L +D +A +VL A+ + V P P+ Y ++ EM Sbjct: 164 ETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAGPN-YFTSQEEM 222 Query: 261 VSIF-SDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318 + +D +A T E+A RC + + +LPRF E + + LR A G Sbjct: 223 ERDWQTDFEKQACFETGELADRCHVEIALDQHLLPRFPLTEGQN----APDVLRQTAYDG 278 Query: 319 LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378 L+ R GA +Y++RL++EL VI M F+ YFLIV D I+++++ + GPGR Sbjct: 279 LKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSREAGVLTGPGR 330 Query: 379 GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438 GS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRDEVI YV +KY Sbjct: 331 GSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRDEVISYVVSKY 390 Query: 439 GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSR 497 G VAQI TFG+L AKAA+RD R+ + + KLIP+ ++LQ A+ + R Sbjct: 391 GEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--ITLQKALQESPR 448 Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557 + + + E++ +LEGL RH STHAAGIVI D+PL + V + D +TQ Sbjct: 449 LENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG-SGDARLTQ 507 Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKG 616 F M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D +T L T Sbjct: 508 FAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLEDKKTLKLFQTGD 567 Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676 T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+GKEKI HP Sbjct: 568 TTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHGKEKIQYPHP 627 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736 + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++++ F+ GA Sbjct: 628 DLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGA 687 Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796 G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F+++ ++ Sbjct: 688 KSKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVF 747 Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIME 855 N +KI ++ +A+ + I ++ PS+N F+V ++ I YS I+ V T I+ Sbjct: 748 GNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVPTKFILEIIN 807 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915 PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D + +Y + Sbjct: 808 ERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLL 867 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHPLDVYKP 973 ++ +K N+FA E F K+ S+ + E E+ G Y S HP+ Y+ Sbjct: 868 GED--SKGMNLFA-EDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQN 924 Query: 974 ILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 L+ + I +A + G N ++AA V + +T+KG + ++T S+ +KE A F Sbjct: 925 KLQNLAIT----RLANLSSGKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMF 980 Query: 1033 P 1033 P Sbjct: 981 P 981 >gi|149198162|ref|ZP_01875209.1| DNA polymerase III, alpha subunit [Lentisphaera araneosa HTCC2155] gi|149138764|gb|EDM27170.1| DNA polymerase III, alpha subunit [Lentisphaera araneosa HTCC2155] Length = 1223 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 353/1011 (34%), Positives = 567/1011 (56%), Gaps = 48/1011 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+ A ++ ++ ++ A A+TD N+ ++ F+ A I+PI+GC ++ Sbjct: 1 MLQSACTMPALIKRLEEGGFEAAALTDFANMCGSIAFTNGLKKANIKPILGCYTYLN--- 57 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + ++LL GYQ L ++ ++ +L + RI S+L++ + Sbjct: 58 --NSRTQNPSNMSSFNGLILLAKNNVGYQNLCKINAQSHL-ESFHIKPRIDRSFLRQY-S 113 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-KLFG-DRLYVNLQRH-RGYDRYRES 198 EG+I + I S + L F +FG + Y+ +Q+H R D + Sbjct: 114 EGIIAIAPFHDSDIASDL---SKNIDPTNALNFYVDIFGKENFYLEIQKHKREGDDEKYP 170 Query: 199 QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258 V+QLA +E+ LVA+ + + HD++ V TV + ++YL Sbjct: 171 LVLQLAKDNEIGLVASQTVYYPEAKMAIPHDIVCCVGEKTVHDPQKLRFPEKNYYLHLPE 230 Query: 259 EMVSIFSDLPEALENTVEIARRC--SFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316 EM +FSD+PEALENT +IA +C +F H P+ P DD + ++ L V Sbjct: 231 EMEGLFSDVPEALENTRKIANQCDVAFDTSEHYPVYPM-----SDD--RTQQQFLLEICV 283 Query: 317 AGLEVRLA-QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375 GL+ R K ++ +R DFEL VI + + YFL+V DFI W+K N+IPVG Sbjct: 284 GGLKERYGLDHKNPKDQREKEIVERTDFELGVIHKSGYDSYFLVVWDFINWSKTNDIPVG 343 Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435 PGRGSGAGS+ AY IT+IDP++++LLFERFLNP+R+S PDFDIDFC+ RR EVI YV+ Sbjct: 344 PGRGSGAGSIVAYLTGITNIDPIKYNLLFERFLNPERISPPDFDIDFCERRRPEVIDYVR 403 Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495 KYG E+VAQI T+G+++AKA ++DV RAL +++ D++ KLIP D ++L D Sbjct: 404 KKYGSEKVAQIGTYGTMKAKAVIKDVTRALGYEHTRADQITKLIPEDLK--ITLHKALFD 461 Query: 496 SRFREARL-----ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + + L ++ V ++++ + LEGL R+ HA G++IGD+ L+ L+P+ Sbjct: 462 PKIKSEELIALNDSEEWVKQIIDNAMPLEGLNRNMGIHACGVIIGDQELTNLIPLISGAN 521 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609 ++ VTQF+ E GL+K DFLGL+TLTL++ +L + + +++D+ IP DD TY Sbjct: 522 GEV-VTQFSAGPCEDLGLLKMDFLGLRTLTLIKDTLGLIKENHDIEIDIEAIPIDDRRTY 580 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T +FQ ES+GM++ ++ +QP D+IA+ +LYRPGPI I + RK+G+E Sbjct: 581 KLFQEGKTTAVFQYESAGMQKYMKELQPTVFPDLIAMNALYRPGPIAYIPSFIERKHGRE 640 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +I +D L+ET G+ +YQEQVM ++Q L ++ EAD LR+AMGKK + + + K Sbjct: 641 EITYDCEGMDEYLQETYGITVYQEQVMLLSQKLGNFTKGEADTLRKAMGKKKMDLLAQLK 700 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +F+ NG + +E FA Y FNKSH+ YA ++YQTA++K HYP EF+A Sbjct: 701 PKFLDQGEGNGHDRKKLEETWEKWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEFMA 760 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A MT E+ N +K+ F ++ R ++++PP++N V F V + I ++L AIKGVGT+ Sbjct: 761 AVMTSELGNADKVTFFLEECRNLGLKVLPPNINKSKVTFSVENGAIRFALGAIKGVGTSA 820 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + I+ + ++S + C RV ++R+VLE ++ +G +D FG R L Q +D Sbjct: 821 SETIVRIRKEGEYESFMNLCERVGHTNVSRKVLEGIIASGGMDEFGNKRSALTQFIDRAL 880 Query: 910 KYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +++ + ++FA E T S ++ ++ + + + E+ +LGFY +GHP Sbjct: 881 EHSSSKANDLAMGQMSLFAEVEEVNTISPDDSMPEWDLR---YKLDMEKTLLGFYATGHP 937 Query: 968 LDVYKPILRKM------GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + +K +++K G+K E A RL M+ + +KT+KG Sbjct: 938 VGEHKQLIKKFSSNSITGLKKQSEDRAV-----ARLGVMISNLNLRKTKKG 983 >gi|326333480|ref|ZP_08199722.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1] gi|325948725|gb|EGD40823.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1] Length = 1194 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 382/1080 (35%), Positives = 578/1080 (53%), Gaps = 73/1080 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA L+ + + + + PAIA+TD N+ A +F +KA A ++P Sbjct: 8 SFVHLHVHTEYSMLDGASLLDGLFKRTSELEMPAIAMTDHGNMHGAYDFWKKAKAHDVKP 67 Query: 70 IIGCQLDIDM---QDNLKMTNQGK-----------TPFPTVPSIVLLVSTAEGYQRLIEL 115 IIG + I + K GK + + + EG L L Sbjct: 68 IIGIEAYITPNTPRSERKRVRWGKGDAAQEGGDDVSGGGAYTHMTMWAENTEGMHNLFRL 127 Query: 116 VSRMYLLDQGKQ-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 SR L +G R+ L E ++G+I+ TG SG I + A K Sbjct: 128 SSRSSL--EGYYFKPRMDKEILAE-HSKGIIVSTGCPSGAIQTRLRLGQWEEALKEAGEL 184 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG D +++ L H ++ +++L T + VATN+S + + ED AH+ L+ Sbjct: 185 QDIFGKDNVFLELMDHGISIEKRVRDDLLKLGKTMGIRPVATNDSHYNNPEDAGAHEALL 244 Query: 233 AVAHSTVVSQ----KDRPRVT---PDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSF 283 V + +++ K R +Y+K+ +EM ++ DL +A +NT+ IA RC Sbjct: 245 CVQSGSRMTEPPYSKGGKRFAFEGSGYYIKSAAEMRELWGRQDLIDACDNTLLIAERCDV 304 Query: 284 -ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + + R E + EE+ LR + G+E+R + Q+ + R++ Sbjct: 305 EFTESTGGYMARADIPEGE----TEESWLRKETWRGIELRYPGEKLT-----QEVKDRVE 355 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 FE++VI + + GYFL+VADFIQW+K N I +GPGRGSGAGS+ AYAL ITD+DPL L Sbjct: 356 FEIDVILQKGYPGYFLVVADFIQWSKNNGIRIGPGRGSGAGSIVAYALKITDLDPLEHGL 415 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 FERFLNP+R SMPDFDIDF RR E I+YV KYG E+VAQI TFG ++AK A++D Sbjct: 416 FFERFLNPERPSMPDFDIDFDDHRRGETIKYVTEKYGAEKVAQIATFGRIKAKQAIKDAA 475 Query: 463 RALQMPYSQVDRLCKLIPNDP-AHPVSLQAI--------ADDSRFREARLADPSVDRLLE 513 R L ++ DR+ K +P D V L+ + + FR DP V ++ E Sbjct: 476 RILDHGFAIGDRITKALPPDVMGKGVPLKELFNPDHKRYGEGGDFRALHDTDPDVRKIYE 535 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 + LEG R HAAG+++ P+ +VP+ + VTQF E GL+K DF Sbjct: 536 TALGLEGQIRQTGIHAAGVIMASEPIIDIVPLMEPKQDGQVVTQFEYPTCEALGLVKMDF 595 Query: 574 LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL L L+ +LD + A R + + L +PFDD TY L+ TLG+FQL+ GMR L Sbjct: 596 LGLSNLHTLEDALDNIRANRDIDLVLEEVPFDDKPTYELMQRGDTLGVFQLDGGGMRALL 655 Query: 633 EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQ 686 M PD DI A+ +LYRPGP+ D+ Y +RKNG+E IV IHP L +P+ L ET Sbjct: 656 RSMLPDRFADITAVSALYRPGPMGADSHNKYAHRKNGREPIVPIHPELEEPLAEVLGETY 715 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQVM IAQ+L+G+SL +AD LRRAMGKK K E+DKQ F +G + G S++ Sbjct: 716 GLIVYQEQVMSIAQVLAGFSLGQADNLRRAMGKKKKAELDKQYAGFQAGMLERGYSQSAI 775 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 I+E+L F+DY FNKSH+AAY V++Y TA++K +YP E++AA +T ++ +K+ + Sbjct: 776 DTIWEILLPFSDYAFNKSHSAAYGVVTYWTAYLKANYPTEYMAALLTSVKNDKDKMAIYL 835 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSL 865 + R+ I ++PP VN DF I + L A++ VG I+EA K F+ Sbjct: 836 NECRRMKIAVLPPDVNESSHDFTAVGTDIRFGLTAVRNVGAQVVDGIVEARTSKGRFEDF 895 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN-IQKYAQWVEKNRTNKHE 924 DF ++V + N+RV+ESL+ AGA D + R L+ + + +Y +++N + Sbjct: 896 NDFLAKVPDRVCNKRVIESLIKAGAFDDMKHLRRSLVAIHETAVDQYVD-IKRNEAIGQD 954 Query: 925 NIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 ++F + F + + + + +E+ +LG Y S HPL + +L Sbjct: 955 SLFGGLDDGDGVEFGVSVAIPEMDEWDKMTLLGHEREMLGLYVSDHPLMGLEHVL----A 1010 Query: 981 KGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + ++ + + + ++ +V + ++ T+KG VT + E FP Sbjct: 1011 NGTDCTIGQLMTDESRPHNSTVTVSGLVTNVNRRITKKGDAWATVTLEDLEGSVEVLLFP 1070 >gi|146299070|ref|YP_001193661.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101] gi|146153488|gb|ABQ04342.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101] Length = 1510 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 363/1081 (33%), Positives = 574/1081 (53%), Gaps = 83/1081 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-----SQK 61 K+ F HL H+ +S+L+ + + NI+ A + PA+A+TDT N+ A F + Sbjct: 257 KAAKFAHLHNHTQFSVLQSTIGIGNIVAATAKNGMPAVAMTDTGNMMGAFHFVSAVMNHN 316 Query: 62 ACAAG----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105 A+G I+PI+GC+ +I +++L K+ +VLL Sbjct: 317 KAASGKNKALVEAGEEPTETEIKPIVGCEFNI-CENHLD-----KSKKDNGYQVVLLAKN 370 Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165 GY L ++ S Y +G V + E +++L+G G I Sbjct: 371 KAGYHNLAKMASIAYT--EGFYYVPRIDKNIVEKYKGDIMVLSGNLYGEIPSKILNIGEN 428 Query: 166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEED 224 AE+ L+ +K+ FG+ Y+ + RH D R ++ +++ + H + L+ATNN+ +L++ED Sbjct: 429 QAEEALIWWKEQFGEDFYLEVMRHNQEDENRVNKTLIEFSQKHNVKLIATNNTYYLNKED 488 Query: 225 YEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEI 277 AHD+L+ V +T + + R ++Y K+ +EM +F+DLPEA+ N E+ Sbjct: 489 ANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSEAEMKKLFADLPEAIINIQEV 548 Query: 278 ARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329 + +LP+F E E D + E LR+ + G + R Sbjct: 549 IDKVEGYSLYRDVLLPKFEIPDEFMVPEDEEDGGVRGENKYLRHLTMEGAKRRY------ 602 Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 G + ++RLDFEL I+ + GYFLIV DFI A+K ++ VGPGRGS AGS AY Sbjct: 603 -GEITESIQERLDFELMTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYC 661 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV NKYG ++VAQIIT+ Sbjct: 662 LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGQKQVAQIITY 721 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS--RFREARLADP- 506 G + K+A+RD R L +P + DR+ KLIP +L +S ++A +D Sbjct: 722 GKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISESEEEVKKALRSDEF 781 Query: 507 -SVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 +V L+ I+ + LEG R+ HA G++I ++ VP+ SD Sbjct: 782 DNVKELIAIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNYVPVTTAKDSD 841 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611 L VTQF+ E AGL+K DFLGLKTLTL++ ++ + R G+ +D P DD ETY L Sbjct: 842 LYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIDLDPDNFPIDDEETYAL 901 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 T+GIFQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RKNG E+I Sbjct: 902 FQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGDEEI 961 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 L ET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK K+ +DK K + Sbjct: 962 KYDLDACAEYLSETYGITVYQEQVMLLSQSLAGFTKGEADVLRKAMGKKQKDVLDKMKPK 1021 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 F+ A++ G I I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA Sbjct: 1022 FVEQAAQKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAV 1081 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850 ++ M++++++ F ++ ++ +Q++ P VN F V D+ + + + AIKGVG+ Sbjct: 1082 LSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDDYAVRFGMGAIKGVGSGAV 1141 Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS----- 904 I+E D + S+ D R+D + N++ +E+L AG D F G +R Q Sbjct: 1142 ETIVENRKDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGDGI 1201 Query: 905 --LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 + +Y ++N + ++F + + ++ + E+ V+G Y Sbjct: 1202 TFYEKAMRYGSKFQENENSSQVSLFGEASEVQIAEPVVPPCEDWSTMEKLAKEKEVVGIY 1261 Query: 963 FSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 SGHPLD ++ ++ E +S+ G N+ A ++ + Q + + G GW F Sbjct: 1262 ISGHPLDDFRFEMKYFCNARLEALKSMNEYVGKNLNFAGIINNVQHRVAKNGK--GWAAF 1319 Query: 1021 S 1021 + Sbjct: 1320 N 1320 >gi|295093096|emb|CBK82187.1| DNA polymerase III catalytic subunit, DnaE type [Coprococcus sp. ART55/1] Length = 1194 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 359/988 (36%), Positives = 558/988 (56%), Gaps = 32/988 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+GA ++ ++ + ++AITD ++ +EF + GI+PI Sbjct: 3 FTHLHVHTGYSLLDGAAKIDGLVRRAKELGYDSLAITDHGVMYGVIEFYETCLREGIKPI 62 Query: 71 IGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +GC++ + + +G + +VLL GY L ++V+R + + Sbjct: 63 LGCEVYVSPGSRFDREVGKGDDRYY---HLVLLAENDLGYHNLSKIVTRGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQR 188 R+ + L++ EG+I L+ +G + A++ + ++ +FG+ Y + +Q Sbjct: 119 RVDMEVLEKY-HEGIIALSACLAGEVATKLRKGDYDGAKETAIRYRNIFGEENYFLEMQD 177 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + +++L+ +P+V TN+S ++ ED+EAHDVL+ + + V ++R R Sbjct: 178 HGIPEQATVNAGIMRLSKELGIPMVVTNDSHYIYAEDWEAHDVLLCIQTNHKVQDENRMR 237 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 YLK++ EM +F EALENT +IA RC+ + +PRF E Sbjct: 238 YDGGQFYLKSKEEMAELFPYALEALENTHKIAERCNVNIVFGEQKVPRFDVPE----GYT 293 Query: 307 EENELRNKAVAGLEVRLA-----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E L + G+E + G +A+G H + RQR+D+EL+VI M F YFLIV Sbjct: 294 AEEYLDHLVYEGMEKKYGLTYEESGKMAEGTHGYEVRQRIDYELSVIKSMGFVDYFLIVW 353 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +AK I VGPGRGS GSV AY L IT I+PL+++LLFERFLNP+R+SMPD DID Sbjct: 354 DFIHFAKSQGIAVGPGRGSAVGSVVAYCLDITTIEPLQYNLLFERFLNPERVSMPDIDID 413 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RR EVI Y KYG E V QII + ++ A+ +RDVGRA+ +PY+ D L K IP Sbjct: 414 FCYIRRQEVIDYCVRKYGEECVTQIIAYQTMGARNVIRDVGRAMDLPYAVCDSLAKAIPA 473 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + + A+ FR+ + +L++I++KLEGL R+A HAAG+VIG + + Sbjct: 474 EKDMTIDI-ALKTSKDFRDMYEGSDEIKKLVDIARKLEGLPRNAGMHAAGVVIGREAIEE 532 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 P+ + VTQF +E G++K DFLGL+T T++Q ++ + Q K Sbjct: 533 YAPLSVGAEGAV-VTQFEKNTVEHLGMLKMDFLGLRTATVVQDTVKLVKQTTGKDIDIDN 591 Query: 602 PFDDHETYHLLTTKG-TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 D L +G T G+FQLES GMR + ++P ++D+IA V+L+RPGP+ I Sbjct: 592 IDYDDPNILGLMGQGKTEGMFQLESEGMRNFMMKLKPQSLDDVIAGVALFRPGPMQFIDD 651 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y K +E + P ++ +L+ T G IIYQEQVMQI L+GY+L +D++RRAM KK Sbjct: 652 YIRGKENRELVHYDTPELEEILEPTYGCIIYQEQVMQIVMKLAGYTLGRSDLVRRAMAKK 711 Query: 721 IKEEMDKQKERFISGASK--------NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 EEM+K++ F+ G + NGIS+T+A IF+ + KFA+Y FNKSH+ AYAV+ Sbjct: 712 KPEEMEKERHNFVYGNKELNVPGCVANGISETVANKIFDEMMKFAEYAFNKSHSVAYAVL 771 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 + QTA++K +YPVEF+AA M+ +DN K+ K+ +Q ++++PP +N F + + Sbjct: 772 AAQTAYLKYYYPVEFMAALMSSVIDNNGKVAKYISVCKQMGVEVLPPDINEGVAKFSISN 831 Query: 833 NRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +I Y L+ IK VG I E + + PF L +F +R+ SK N++ +E+L+ +GA Sbjct: 832 GKIRYGLSGIKSVGGAVVDRIEAERTKNGPFKDLRNFLTRMPSKDTNKKTVEALILSGAF 891 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS-- 949 D G +R Q++ +L I + A K+R + ++F F + VE S Sbjct: 892 DDMGANRKQMMMALPAIAEEAARERKSRESGQMSLFDLMGDDFVQSNLVPYPDVEEYSDQ 951 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRK 977 + E+ VLG Y SGHPL Y ++++ Sbjct: 952 EKLALEKSVLGVYISGHPLGKYIELMQR 979 >gi|188993898|ref|YP_001928150.1| DNA polymerase III alpha subunit [Porphyromonas gingivalis ATCC 33277] gi|188593578|dbj|BAG32553.1| DNA polymerase III alpha subunit [Porphyromonas gingivalis ATCC 33277] Length = 1228 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 382/1116 (34%), Positives = 597/1116 (53%), Gaps = 111/1116 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58 FVHL VHS +SLL+G ++N+++DK AD P IA+TD +F EF Sbjct: 4 FVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSGHN 63 Query: 59 -SQKACAAGI-----------------------------------QPIIGCQLDIDMQDN 82 + K C + +PI+GC+ + Sbjct: 64 ATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARRTR 123 Query: 83 LKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 NQ P+ SI +LL GY+ LI++VS + Q + RI Sbjct: 124 FDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQYYRP-RIDREL 182 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--- 192 LQ+ EG+I+ + G I + AE+ +L FK+LFGD Y+ +QRH + Sbjct: 183 LQKY-HEGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEVQRHETHNPL 241 Query: 193 ---DRYRESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 D + + Q +++L + ++ATN+ F +EED EAHD L+ ++ + + Sbjct: 242 GNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDPN 301 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDI 303 R R T ++K +EM +IF DLPE L NT+EI + F + ++P F I E Sbjct: 302 RMRYTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVEFYSIDNKALMPDFPIPPE---- 357 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 K++++ LR G + + + + ++R+DFEL I M F GYFLIV DF Sbjct: 358 YKDDDDYLRFLTYEGARRKYGEDL------SDEIKERIDFELETIKGMGFPGYFLIVQDF 411 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I A+ + VGPGRGS AGS AY L ITDIDP+++ LLFERFLNPDR+SMPD D+DF Sbjct: 412 IAAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFD 471 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND- 482 D R E++R+V KYG ERVA IIT+G++ K++++DV R ++P + +RL KL+P+ Sbjct: 472 DDGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLPESNRLAKLVPDKI 531 Query: 483 PAHP-VSLQ-AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P V+L+ AI ++A L+ V R L+ +Q LEG R+ HA GI+IG + Sbjct: 532 PGEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDI 591 Query: 540 SQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 S +VP+ +D + +L VTQ+ IE+ GLIK DFLGLKTL++++++L + +R G+ Sbjct: 592 SDVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGI 651 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +++ IP DD TY L + T+G FQ ES GM++ L +QP ED+IA+ +LYRPGP Sbjct: 652 DLNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGP 711 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RK+G+E I P ++ LKET GV +YQEQVM +++ L+G++ ++D LR Sbjct: 712 MDYIPSFIARKHGREPIDYDLPEMEEYLKETYGVTVYQEQVMLLSRKLAGFTRGQSDELR 771 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK+ E+M+ K +F+ G +KNG + + I+ KFA Y FNKSHA Y+ ++Y Sbjct: 772 KAMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAY 831 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833 QTA++K +YP E++A +++ ++N+ +I K + + I ++ P VN + F V N Sbjct: 832 QTAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANG 891 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + L+A+KGVG+ I+ E A+ + + DF R++ NR+ +ESL AGA D Sbjct: 892 DIRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRKTMESLALAGAFD 951 Query: 893 CFGYSRMQLLQS---------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 F SR + + + + +Y V++ + ++ ++F E+ + Sbjct: 952 SFALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEEDLMIPRPQPSPT 1011 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------TIRGNNIR 996 N R E+ ++G Y S +P+ Y+ IL Y + A ++ G N+ Sbjct: 1012 EPWNDLERLNKERELVGLYLSSNPMAQYQVILDH-----YCNTHAADLTDPDSLVGKNLV 1066 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 LA +V Q +R + +T + + E F Sbjct: 1067 LAGIVTKAFQGISRSNNPYSKITLEDLSGTGEIPLF 1102 >gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus HTCC2559] gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus HTCC2559] Length = 1454 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 368/1080 (34%), Positives = 579/1080 (53%), Gaps = 80/1080 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ------KAC 63 +F HL HS +S+L+ +S+ +++D A+ P +A+TD N+ A F + K+ Sbjct: 261 TFSHLHNHSQFSVLQSTMSIQDLVDNAIANNMPGVALTDHANMMGAFHFVRAVNTYNKSL 320 Query: 64 AAG-------IQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 A ++ I+GC+ + D D + N + IV+L T +GY L + Sbjct: 321 AGSEDLDKKPLKAIVGCEFQVCEDHNDKSRQDNGYQ--------IVMLAKTKKGYHNLAK 372 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 + S Y +G V + E E +I+LTG G + + AE+ LL + Sbjct: 373 MASIAYT--EGFYYVPRIDRAVVEKYKEDVIVLTGNLYGEVPSKVLNVGEKQAEESLLWW 430 Query: 175 KKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 K F + LY+ + RH D R ++V ++LA H++ +VA+NN+ + ++ D AHD+L+ Sbjct: 431 KSHFEEDLYMEIMRHDQEDERRANEVLIKLAKAHDIKIVASNNTYYTAKGDANAHDILLC 490 Query: 234 VAHSTVVSQK-DRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 V S+ R R ++Y K+ EM ++F DLPEA+ NT ++ + Sbjct: 491 VKDGEKQSKPIGRGRGYRYGLPNQEYYFKSNDEMKALFKDLPEAITNTQDVVNKIEGFDL 550 Query: 287 VHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +LP F K+ DD K EN L++ G + R G + + Sbjct: 551 ARDVLLPAFEIPEKFKDSKDLDDGGKRGENAFLKHLTYEGAKERY-------GEITPEIK 603 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RLDFEL++I + + GYFLIV DFI+ A+ ++ VGPGRGS AGS AY L IT+IDP+ Sbjct: 604 ERLDFELSIIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSAVAYCLKITNIDPI 663 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 ++ LLFERFLNPDR+SMPD DIDF + R V+ YV KYG ++VAQIIT+G++ AK+A+ Sbjct: 664 KYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIKKYGSDQVAQIITYGTMAAKSAI 723 Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-PSVDRLLEIS-- 515 RD GR L +P + D++ KLIP D + + + R+ R D V LL IS Sbjct: 724 RDTGRVLDLPLHETDKIAKLIP-DMTKLGKIFGVDEKELSRKFRSEDFEGVKELLSISGG 782 Query: 516 -----------QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 + LEG R+ HA G++I +S VP+ R +L +TQF+ +E Sbjct: 783 NDLQAQTVNQARVLEGSVRNTGVHACGVIITPDDISNFVPIARSKDGELYITQFDNSVVE 842 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 AGL+K DFLGLKTLTL++ ++ + A+ GV++D P DD +TY L T+GIFQ Sbjct: 843 DAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVQLDPDSFPLDDEKTYELFQRGETVGIFQY 902 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM++ ++ ++P +D+IA+ +LYRPGP++ I + RK+G E I P ++ LK Sbjct: 903 ESPGMQKHMQSLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEDIEYDLPAMEEYLK 962 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+ +YQEQVM ++Q L+ ++ EAD+LR+AMGKK K +DK K +FI AS G Sbjct: 963 ETYGITVYQEQVMLLSQKLADFTKGEADILRKAMGKKQKAVLDKMKPKFIEQASAKGHDA 1022 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ M N++++ Sbjct: 1023 EKLEKVWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMSNIKQVT 1082 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKP 861 F ++ R+ + ++ P VN F V + I + +AAIKGVG++ I+ E + Sbjct: 1083 FFMEECRRMKLDVLGPDVNESFRKFSVNKEGAIRFGMAAIKGVGSSAVESIVAERKENGH 1142 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQL-------LQSLDNIQKYAQ 913 F S+ D R+D + N++ E+L AG D F R Q + L+ + +YA Sbjct: 1143 FKSIFDMAKRIDLRAANKKAFENLALAGGFDSFQDTHRAQYFLDEGDGITFLEKVIRYAA 1202 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 ++N+ + ++F + + + + E+ V+G Y SGHPLD Y Sbjct: 1203 KYQENKNSSQVSLFGEASEVQIPEPVVPPCEEWGTMEKLRKERDVVGMYISGHPLDDYNI 1262 Query: 974 ILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 ++ Y E + + + LA ++ + T+ + GW F+ A++Y + Sbjct: 1263 EMKSFCNANLNYLEDLQQVLNAELSLACILTDIRHLTTK--TNKGWAIFT--AEDYHNTY 1318 >gi|119717274|ref|YP_924239.1| DNA polymerase III subunit alpha [Nocardioides sp. JS614] gi|119537935|gb|ABL82552.1| DNA polymerase III, alpha subunit [Nocardioides sp. JS614] Length = 1183 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 385/1074 (35%), Positives = 579/1074 (53%), Gaps = 69/1074 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA L+ + ++A Q PAIA+TD NL A +F KA G++P Sbjct: 8 SFVHLHVHTEYSMLDGASLLDGLFSRVADLQMPAIAMTDHGNLHGAFDFYSKARKHGVKP 67 Query: 70 IIGCQLDI--------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 IIG + I D + + + EG L L Sbjct: 68 IIGIEAYITPGTGRGERRRVRWGKGDAAEEGGDDVAGGGAYTHMTMWAENTEGMHNLFRL 127 Query: 116 VSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 S L +G R+ LQ+ ++G+I+ TG SG I A + Sbjct: 128 SSLSSL--EGYFYKPRMDREILQQ-HSKGIIVSTGCPSGAIQTRLRLGQWDEAVREAGEL 184 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG + +++ L H ++ +++L +P +ATN+S + + +D +AHD L+ Sbjct: 185 QDIFGRENVFLELMDHGISIEKRVRDDLLRLGRQLGIPPLATNDSHYNNPDDADAHDALI 244 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCS--FILQV 287 VA +S +R + +Y+K+ +EM +++ DL EA +NT+ IA RC F+ Sbjct: 245 CVASGKRLSDTNRLKFDGGGYYIKSPAEMRQLWTQHDLVEACDNTLAIAERCEVEFVEST 304 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 ++ + + E++ R + G+E R + Q+ + R++ EL + Sbjct: 305 GG-----YMARADVPAGETEDSWFRKEVWRGIEARYPGDRLT-----QEVKDRVEMELAI 354 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I++ + GY+L+VADFIQW+K+N I VGPGRGSGAGS+ AYAL+ITD+ PL L FERF Sbjct: 355 ISQKGYCGYYLVVADFIQWSKRNGIRVGPGRGSGAGSIAAYALSITDLCPLEHGLFFERF 414 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R SMPDFDIDF RR EVI+YV KYG +RVAQI TFG L+AKAA++D R L Sbjct: 415 LNPERPSMPDFDIDFDDHRRGEVIKYVTEKYGADRVAQIATFGRLKAKAAIKDAARVLDF 474 Query: 468 PYSQVDRLCKLIPNDP-AHPVSLQAIAD--------DSRFREARLADPSVDRLLEISQKL 518 ++ DR+ K +P D V+L+ I D FR +DP V R+ + + L Sbjct: 475 GFAISDRITKALPADVMGKGVALKDIFDPGHKRYGEGGEFRSLHDSDPDVRRIYDTAVGL 534 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EG R+ HAAG+++ PL +VP+ + +TQF+ E GL+K DFLGL Sbjct: 535 EGQIRNWGVHAAGVIMSSEPLINVVPIMARPQDGAIITQFDYPMCESLGLVKMDFLGLSN 594 Query: 579 LTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 L +L ++ + A RG +V L +PFDD TY L+ TLG+FQL+ GMR L MQP Sbjct: 595 LHILDDAVANIEANRGEQVVLEELPFDDRATYELMGRGDTLGVFQLDGGGMRALLRSMQP 654 Query: 638 DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIY 691 D DI A+ +LYRPGP+ D+ Y RKNG+E I IHP ++P+L ET G+I+Y Sbjct: 655 DQFADITAVSALYRPGPMGADSHNKYARRKNGREPIEPIHPALAEALEPVLGETYGLIVY 714 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVM IAQ+L+G++L AD LRRAMGKK KEE+DKQ F SG + G + ++ Sbjct: 715 QEQVMAIAQVLAGFTLGAADNLRRAMGKKKKEELDKQYAGFQSGMLERGFPQAAIDTLWA 774 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L F+DY FNKSH+AAY VI+Y TA++K +YP E++AA +T D+ +K+ + + R+ Sbjct: 775 ILLPFSDYAFNKSHSAAYGVITYWTAYLKANYPAEYMAALLTSAKDDKDKLAIYLNECRR 834 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCS 870 IQ++PP VN +F N I + L A++ VG+ I+ A +K ++ DF S Sbjct: 835 MKIQVLPPDVNESAHNFTPVGNDIRFGLTAVRNVGSNVVDGIVAAREEKGRYEDFNDFLS 894 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 +V ++ N+RV ESL+ AGA D + R L L + + ++V R ++ ++ Sbjct: 895 KVPAQVCNKRVFESLILAGAFDDMKHKRRAL--HLKHEEAVDRYVGLKREDEGQDSLFGG 952 Query: 931 KGT----FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 G+ F I L + E+ +LG Y S HPL + +L + S Sbjct: 953 SGSDDVVFDVSIALPDVDEWDKMTLLSREREMLGLYVSDHPLLGLEHVL----ANSSDCS 1008 Query: 987 VATIR-------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + G+++ ++ +V S Q+K T++G VT + + FP Sbjct: 1009 IGQLMLDEDRPDGSSVTISGLVTSVQRKITKRGDAWAMVTVEDLDGAIDVLLFP 1062 >gi|225012068|ref|ZP_03702505.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A] gi|225003623|gb|EEG41596.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A] Length = 1436 Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust. Identities = 368/1074 (34%), Positives = 580/1074 (54%), Gaps = 73/1074 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL HS +S+L+ ++ +++ A+ + PA+AITD NL A F + A Sbjct: 253 FVHLHNHSQFSVLQATSRISQLVEATASYKMPAVAITDHANLMGAFHFIKAIKAHNKDLE 312 Query: 67 ----IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 I+PIIGC+ + D + + G +V L +GY L ++ S Y+ Sbjct: 313 EAQQIKPIIGCEFYVCDDHTDRSRRDDGY-------QMVFLAKNKKGYHNLAKMTSMAYV 365 Query: 122 LDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 G V RI +++ E LI+L+G G + + AE+ L + F + Sbjct: 366 --NGFYYVPRIDREIVKQY-KEDLIVLSGNMYGELASKILNLGDRQAEEALQWWYSEFKE 422 Query: 181 RLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA--- 235 Y+ L RH G DR + +V+LA +++PL+ATNN+ + +E+ AHD+L+ V Sbjct: 423 DFYIELMRHGEEGEDR-ANAVLVKLALQYDIPLIATNNTYYTKKEEANAHDILLCVKEGE 481 Query: 236 -HSTVVSQKDRPRVT-PDH--YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 +T + + R P+H Y K+ EM ++F+D+PEA+ N + + + Sbjct: 482 KQATPIGRGRGFRYGFPNHEYYYKSPEEMKALFADIPEAITNIGALIDKIESFDLAREVL 541 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIAR 350 LP+F E Q E+++ + L QGA + G +++ ++R+DFEL VIA+ Sbjct: 542 LPKFEIPES--YQIHEDSDGKKGENKYLHYLTYQGAEKRYGTLSEEIKERIDFELGVIAK 599 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + GYFLIV D I A+ ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFLNP Sbjct: 600 TGYPGYFLIVQDLIAAARDLDVSVGPGRGSAAGSVVAYCLKITNIDPIKYDLLFERFLNP 659 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 DR+SMPD DIDF + R +V+ YV KYG +VAQIIT+G++ AK+++RD R L +P Sbjct: 660 DRVSMPDIDIDFDDEGRSKVMDYVIKKYGSNQVAQIITYGTMAAKSSIRDTARVLDLPLG 719 Query: 471 QVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADPSVDRLLEISQ------------ 516 + DR+ KL+PN + L + + D +E L + V R+ EI Sbjct: 720 EADRIAKLLPN-----IKLAKLFSSSDKELKET-LRNDEVLRVNEIKNLADEDSLSGETI 773 Query: 517 ----KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 LEG R+ THA G++I ++Q VP+ SDL VTQF+ +E AGL+K D Sbjct: 774 QQAIVLEGSLRNTGTHACGVIITPDDITQFVPVATAKDSDLYVTQFDNSVVEDAGLLKMD 833 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLTL++ ++ + + + +D P DD +TY L T+GIFQ ES+GM++ Sbjct: 834 FLGLKTLTLIKDTVKLVKYKHNIDLDPDTFPLDDEKTYELFQRGDTVGIFQYESAGMQKY 893 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 L+ ++P D+IA+ +LYRPGP++ I + +RKNG E+I P++ L+ET G+ +Y Sbjct: 894 LKDLKPTVFADLIAMNALYRPGPLEYIPSFVDRKNGNEEISYDLPVMAEYLEETYGITVY 953 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVM ++Q L+G+S +ADVLR+AMGKKI + K K +FI G NG + I I++ Sbjct: 954 QEQVMLLSQKLAGFSKGDADVLRKAMGKKIFALLQKLKPQFIEGGKNNGHPEEILEKIWK 1013 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 FA Y FNKSH+ YA+I YQTA++K HYP E++AA ++ M +++++ F ++ R+ Sbjct: 1014 DWEAFAAYAFNKSHSTCYALIGYQTAYLKAHYPAEYMAAVLSNNMSDIKQVTFFMEECRR 1073 Query: 812 FNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870 + ++ P VN F V D + I + + AIKGVG I+E D+ ++S+ D Sbjct: 1074 LGLNVLGPDVNESFYKFAVNDQQAIRFGMGAIKGVGKGAVDTIIEHRKDQRYESIFDLVK 1133 Query: 871 RVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNK 922 R+D + N++ E+L AG D F R Q L+ + ++ ++N + Sbjct: 1134 RIDLRAANKKAFENLALAGGFDSFLNVKRAQYFNPDGDGVTFLEKVLRFGSKYQENLNSS 1193 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++F E + +T+ + +R + E+ V+G Y S HPLD + + Sbjct: 1194 QTSLFGEETNSTYQDLTIPDCEAWTNLIRLKKEKEVVGIYISSHPLDDFTHEIEHFVTLS 1253 Query: 983 YEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF--SEPAKEYEANFF 1032 + ++ + + +V Q ++R G GW F + + +YE F Sbjct: 1254 LNQLGALDQLVNREFSIGGIVNEIQHLESRNGK--GWARFIVEDFSDQYEFRIF 1305 >gi|293400488|ref|ZP_06644633.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305514|gb|EFE46758.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1038 Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust. Identities = 353/1028 (34%), Positives = 577/1028 (56%), Gaps = 50/1028 (4%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL V S Y+LL+ +++ I+D A+A+ D + A+ F A A IQPI Sbjct: 14 VHLHVRSCYTLLQSTMTIQKIVDSAKRYGYHAVALCDKEVMHGAMAFYHMAKKADIQPIF 73 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVR 130 G ++++ ++ + +LL GYQ L++L + + ++ +Q ++ Sbjct: 74 GMEVEVAEEEG-------------IFGFILLAKNDNGYQALMKLSTMLNTKERKEQLTME 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 L++ T+ ++LT G ++ + L K+ F YV + R+ Sbjct: 121 ELLTY-----TKDCVVLTNGDQNQMETYLIKEEMEHLAAFLQRCKESFAT-FYVAISRND 174 Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 R + + L ++P A + F + E++ L A+ + K + Sbjct: 175 SPLLRQKNRLLKALCQQMQIPTTALSRIYFDEAKGEESYKTLCAINQGVSLDDK-MLNYS 233 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P Y +++ EM ++ + + L + +IA+ C ++ ILP+F + E Sbjct: 234 PKRYFRSKEEMAELYDE--DDLAASDKIAQMCHVEMKFPKAILPKFKNR----YGMSSEE 287 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR GLE R+ I Y QRL +EL+VI M ++ YFLIV DFI++AK Sbjct: 288 FLRRLCHKGLEKRMQYQKIPSVY-----EQRLRYELDVIISMGYADYFLIVWDFIRFAKT 342 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +I +GPGRGS AGS+ AY L IT DP+R+ LLFERFLNP+R+SMPD D DF DRRDE Sbjct: 343 QDIYIGPGRGSAAGSLVAYCLGITHADPIRYHLLFERFLNPERVSMPDIDTDFPDDRRDE 402 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI YV + YG V+ IITF +L AK LRDVG+A+Q+ Q+D LCKL+PN P V+L Sbjct: 403 VIAYVHDLYGEHHVSHIITFNTLAAKQVLRDVGKAMQVAPRQIDLLCKLVPNRP--KVTL 460 Query: 490 Q-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 Q A + +F++ + + +L I+ +LEGL RH+S HAAGI++ + +S + P+ D Sbjct: 461 QDAYQERVKFKQMINSGEQMRKLFAIALQLEGLPRHSSLHAAGIILSNEDISNVCPLI-D 519 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 V + TQF M+++E+ GLIK DFLGL+ LT++ + + + + ++D+ IP DD +T Sbjct: 520 VDEGMCATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVHQINAKEKRLDIMHIPLDDAKT 579 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y L+ + T+G+FQLES GM+ + M+P C EDI+A V+L+RPGP++NI Y + Sbjct: 580 YQLIRSVDTVGVFQLESEGMKNLIRKMKPTCFEDIVATVALFRPGPMENIPRYLECRTHP 639 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 EK+ +HP + P+L+ T GV+IYQEQVMQIAQ ++G+SL +AD LR+A+ KK +E+ Sbjct: 640 EKVDYLHPDLKPILENTYGVMIYQEQVMQIAQTMAGFSLGKADNLRKAISKKKGKELQSL 699 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 +E F+ GA + G +++A+ ++EL+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F Sbjct: 700 REDFVEGAKQKGYEESLAIRVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFF 759 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 A + + + K ++ +AR+ +I+I+ PS+N +++ N + + L IKG+G Sbjct: 760 TALLNSVIGSETKTSEYVFEARKRHIEILLPSINQSSNQYEIEGNALRFPLVGIKGIGNA 819 Query: 849 TARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + ++E + F DF +R++ +KL ++ +E L+FAGALD F +R LL SLD+ Sbjct: 820 VSNVLIEERQKRGNFKDFFDFVARMEGQKLGKKTMEMLIFAGALDEFKINRSSLLASLDD 879 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +Y V+ ++ + +F E + +L+ EN++ R E E+ +LGFY S HP Sbjct: 880 AIRYGDLVKIE--DQDQILFDFELVSKPALTSLK----ENAAQRAEREKEMLGFYLSAHP 933 Query: 968 LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 + LR +G +A + ++ MV +Q +T+ G + +V ++ Sbjct: 934 ITA----LRDKMQQGLVPLIALTSHLHSYVKFICMVERTKQFRTKNGHLMMFVVGADETG 989 Query: 1026 EYEANFFP 1033 +++ P Sbjct: 990 KFDLVCMP 997 >gi|227529180|ref|ZP_03959229.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227350905|gb|EEJ41196.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 1116 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 365/1034 (35%), Positives = 569/1034 (55%), Gaps = 60/1034 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV LQV SS+SLL + +N ++ AIA+TD N L+ A++F A AGI+P+ Sbjct: 3 FVPLQVKSSFSLLRSPIRINELVTTAKERGYSAIALTDKNVLYGAIDFYNAAKKAGIKPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG QL I + +N+ TN ++ L GYQ L+EL +R D + ++ Sbjct: 63 IGLQLTIAL-NNVDGTNL---------ELLFLAKDRAGYQNLMELSTRQQTSD--RDTLP 110 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + ++ + +++ P F S AE ++ D+ + L + Sbjct: 111 LTFEQIKPFLSSLYVII------PPQSTVF--SWLKAEDTVVNLLHESTDQDSLLLGINP 162 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVT 249 D+ + S + QLA +H LPLV + +L+ +D A VL A+ +T + + +++ + Sbjct: 163 QLDQIQRSTLTQLAASHSLPLVGVSPVEYLNADDLFASKVLQAIDANTQLEKVEEKAKEL 222 Query: 250 PDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 YL+ +++++ + +L +A + TVEIA +C+ + PILP F K Sbjct: 223 GKDYLQPQADILRAYQAVNLEQAADKTVEIAVKCNIDFEFKQPILPHFDTPTG----KSS 278 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR + GL+ R IA G DY++RL EL VI M F YFLIV D +++A Sbjct: 279 AEYLRYLCIEGLKKR----QIAPGLKLVDYQKRLAKELKVIHEMGFDDYFLIVWDVMRFA 334 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I PGRGS AGS+ AYAL ITDIDPL+++LLFERFLNP+R MPD D+D +RR Sbjct: 335 HRTKITTDPGRGSAAGSLVAYALAITDIDPLQYNLLFERFLNPERAQMPDIDLDIPDNRR 394 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EV+ YV KYGH RVAQIITFG+L AK +RDV R + ++ L +P+ H Sbjct: 395 SEVLEYVHQKYGHNRVAQIITFGTLAAKQVIRDVSRVFGLNRYAINELTGALPHG-LHIS 453 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++ + R R P L ++QKLEGL RH S HAAGIV+ ++PL ++VP+ + Sbjct: 454 LAGSLKESQRLRNLLNDHPEYRLLYRVAQKLEGLPRHYSIHAAGIVLSEKPLHEIVPL-Q 512 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 + L +TQF +E GL+K DFLGL+ L+++ SL + QR + DLS I D + Sbjct: 513 NGSEGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNSLKLIRQRNPQFDLSKISLADSK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T G+FQ ES+G+R+ L + PD EDI+A+ +LYRPGP++NI + RK G Sbjct: 573 TLALFQKGLTDGVFQFESAGIREVLVNLHPDSFEDIVAVNALYRPGPLENIPHFIARKQG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KE P ++P+L T G+++YQEQVMQ+A +++G+SL EAD+LRRAM KK + M+ Sbjct: 633 KEHYQLPDPSLEPILGATYGILVYQEQVMQLASVMAGFSLGEADLLRRAMSKKKRATMEG 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 + +F++GA NG S +A +F + +FA+YGFN+SHA AY+ +++Q A++K +YP EF Sbjct: 693 MRAKFMNGAQANGYSAELAKRVFNYIDQFANYGFNRSHAVAYSKMAFQMAYLKANYPAEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A M E NV+K+K QDAR+ ++++ P +N F + N++++ L AIKG+ Sbjct: 753 FTALMNAE-PNVDKLKMHVQDARRSGVKLVGPRINESQQQFSLSQNQLFFGLTAIKGLRR 811 Query: 848 TTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL- 905 R I+ E + P+ + +F SR+ SK ++ L++AGA D GY+R +++ +L Sbjct: 812 DFIREILQERQQNGPYKDIRNFISRLASKWQKPELIAPLIYAGAFDDLGYNRAEMIDALP 871 Query: 906 ---DNIQKYAQWVE-KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 IQ ++ E + I A ++ ++ R E LG Sbjct: 872 MLISGIQLFSSTNELEADPELQSTIAARQEYPLTE--------------RLAKENEYLGV 917 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSR-IGWVT 1019 Y SGHP+ Y+ + IK + + +R G + + ++ + T+K R + +++ Sbjct: 918 YLSGHPVTQYQ----DLAIKYRVQPASQLRPGQTVTILMLINRVKTIHTKKDHRQMAFLS 973 Query: 1020 FSEPAKEYEANFFP 1033 ++ E EA FP Sbjct: 974 GTDQTGEIEATVFP 987 >gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49] gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49] Length = 1476 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 368/1092 (33%), Positives = 569/1092 (52%), Gaps = 102/1092 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 F HL HS YS+L+ S ++++ AD Q A+A+TD+ N+ A FS+ Sbjct: 262 FAHLHNHSQYSILQSTSSTQDLVNAAIADNQRAVALTDSGNMMGAFHFSRAVNNHNAAKL 321 Query: 67 ---------------------------------IQPIIGCQLDIDMQDNLKMTNQGKTPF 93 + I+GC+ + QD+L +N+ Sbjct: 322 KEYEAALAAYEAVDDTATDFEGQVPDKPEKPIPVTAIVGCEFFV-CQDHLDKSNKDNGY- 379 Query: 94 PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSS 152 IV+L GY L ++ S + +G V RI +++ + +I+L+GG Sbjct: 380 ----QIVILAKNKAGYHNLAKMSSIAFT--EGFYYVPRIDREVIKKY-RDDIIILSGGMY 432 Query: 153 GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPL 211 G I AE+ LL +K+ FGD Y+ + RH D R +Q ++ + H++ L Sbjct: 433 GEISSKILNVGENQAEEALLWWKEEFGDDFYLEILRHGQEDEDRVNQTIIDFSRKHDVKL 492 Query: 212 VATNNSLFLSEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIF 264 +A NN+ ++ +E AHD+L+ V +T + + R ++Y K++ EM IF Sbjct: 493 IAANNTYYIDKESANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSQDEMKLIF 552 Query: 265 SDLPEALENTVEIARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAV 316 DLPEA+ N E+ + +LP F E E D ++ E L++ Sbjct: 553 KDLPEAIINIAEVIEKIEPYSLQRDVLLPVFDIPDEFKVAEDEIDGGKRGENAFLKHLTY 612 Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 G + R G + ++RLDFEL+VIA + GYFLI DFI+ A+K ++ VGP Sbjct: 613 IGAKERY-------GEITDEIKERLDFELDVIANTGYPGYFLITEDFIREARKLDVSVGP 665 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGS AGSV AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V++YV + Sbjct: 666 GRGSAAGSVVAYCLKITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVID 725 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIAD 494 KYG +VAQIIT+G++ AK+++RD R L +P ++ D + KLIPN A Sbjct: 726 KYGGNQVAQIITYGTMAAKSSIRDTARVLDLPLNEADHVAKLIPNMTKLAKVFGYSEKEL 785 Query: 495 DSRFREARLADPSVDRLLEISQ-------------KLEGLYRHASTHAAGIVIGDRPLSQ 541 +FR L P V L+ S+ KLEG R+ HA G++I ++ Sbjct: 786 KQKFRSDEL--PKVLELIATSEGTDLTAETINQAKKLEGSVRNTGIHACGVIITPSDITN 843 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600 VP+ SDL VTQF+ +E AGL+K DFLGLKTLTL++ ++ + + G+ +D Sbjct: 844 YVPVSTAKDSDLYVTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKLVKHKHGIDLDPDN 903 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 P DD TY L T+GIFQ ES+GM++ ++ ++P D+IA+ +LYRPGP++ I Sbjct: 904 FPLDDVPTYELFQRGETVGIFQYESAGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPS 963 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RKNG+E+I P ++ LKET G+ +YQEQVM ++Q L+ +S +ADVLR+AMGKK Sbjct: 964 FIRRKNGEEEIEYDLPAMEEYLKETYGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKK 1023 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K +DK K RFI A NG I++ FA Y FNKSH+ YA I+YQTA++K Sbjct: 1024 QKAVLDKMKPRFIENAVGNGHDAEKLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLK 1083 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSL 839 HYP E++AA ++ M +++++ F ++ ++ ++I+ P VN F V D + + + Sbjct: 1084 AHYPAEYMAAVLSNNMRDIKQVTFFMEECKRMGLEILGPDVNESFFKFSVNDRGAVRFGM 1143 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIKGVG I+E + + S+ D R+D + N++ E+L AG D F R Sbjct: 1144 GAIKGVGANAVATIVENREEAKYKSIFDMAKRIDLRSANKKAFENLALAGGFDSFNAHRA 1203 Query: 900 QLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 Q L L+ + KYA ++++ + ++F + + + + Sbjct: 1204 QYLHQDADGQTFLEKVLKYANKYQESKNSSQVSLFGESSDVQIPEPEVPPCEEWGTMKKL 1263 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 E+ V+G Y SGHPLD +K +R + + E + G + +V Q +++ Sbjct: 1264 RQEREVVGVYISGHPLDDFKIEMRSFANCKVADFNELEQHV-GKEMSFGGIVADVQHRES 1322 Query: 1010 RKGSRIGWVTFS 1021 + G GW F+ Sbjct: 1323 KAGK--GWAIFT 1332 >gi|311745732|ref|ZP_07719517.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1] gi|126575175|gb|EAZ79525.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1] Length = 1428 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 377/1073 (35%), Positives = 574/1073 (53%), Gaps = 86/1073 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VHS YS+L+ + ++ K PAIA+TD N+ +A F ++A + I+PI Sbjct: 244 FTHLHVHSQYSVLQATSEIPAMVAKAKEMGMPAIAMTDHGNMMAAFHFVKEALSNDIKPI 303 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV- 129 +GC+ NL + K+ VL+ GY L +L S Y +G + Sbjct: 304 LGCEF------NLCRDRKNKSSKDDGYQTVLIAKNKAGYHNLAKLAS--YANIEGFYYLP 355 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI LQ+ + LI TGG G I AE+ L +K+ FG+ YV L RH Sbjct: 356 RIDKEVLQQYKGD-LIATTGGLWGEIPFLILNVGETQAEEAFLWWKEQFGEDFYVELCRH 414 Query: 190 RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---- 244 + + ++V+ + A H++ A NNS + ++ D +AHD+L+ V +V + Sbjct: 415 GIPEEEKVNEVLLEFAKKHDVKYFAANNSYYTNKADAKAHDILLCVKDGELVEKPKKYIG 474 Query: 245 -RPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295 R R ++Y+K+ EM +F+DLPEA+E T EI + +LP F Sbjct: 475 KRGREFRYGFPNDEYYIKSPEEMKKLFADLPEAIECTAEITDKIEPYKLAREVLLPAFDI 534 Query: 296 ------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 E E D ++ E LR+ G + R + + +RLDFEL I Sbjct: 535 PDEFKHPEDEVDGGKRGENAFLRHLTYEGAKKRYEE-------ITPEIEERLDFELKTIE 587 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 + GYFLIV DFI A+K + VGPGRGS AGS AY IT+IDP+ ++LLFERFLN Sbjct: 588 NTGYPGYFLIVQDFIVEARKLGVSVGPGRGSAAGSAVAYCTGITNIDPIAYNLLFERFLN 647 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+S+PD DIDF R +VI YV KYG +VAQIIT+G++ AK+A+RD R L +P Sbjct: 648 PDRVSLPDIDIDFDDHGRQKVIDYVIKKYGANQVAQIITYGTMAAKSAIRDTARVLNLPL 707 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD---------PSVDRLLEISQK--- 517 + RL L+P+ + L+A+ + R A L+D D L+ IS+ Sbjct: 708 ADAGRLANLVPD-----IKLKALFGLAGNR-AALSDKLKGQGELIAKADELIRISKGQDE 761 Query: 518 ----------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 LEG R+ HA G++I ++ VP+ SD+ TQF+ +E AG Sbjct: 762 SAKTINQATMLEGSVRNLGIHACGVIITPDDITNFVPVALAKDSDMVCTQFDNSVVESAG 821 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGLKTLTL++ ++ + +R G+++D P DD +TY L T+GIFQ ES+ Sbjct: 822 LLKMDFLGLKTLTLIKDAVKIVKERHGIELDPEKFPIDDVKTYELFQRGETVGIFQYESA 881 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 GM++ + ++P D+IA+ +LYRPGP++ I + RK+G+E I ++ L ET Sbjct: 882 GMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIRRKHGEEPITYDLDDMEEYLNETY 941 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK+K+ +DK K +F++ A++ G K+ Sbjct: 942 GITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKLKDVLDKMKPKFVNQAAEKGHDKSKL 1001 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 I++ FA Y FNKSH+ YA ++YQTA++K HYP E+LA+ ++ M+++ ++ F Sbjct: 1002 EKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYLASVLSNNMNDISQVTFFM 1061 Query: 807 QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDS 864 ++ ++ I ++ P VN F V + I + +AAIKG G+ I+ E + PF + Sbjct: 1062 EECKRSGIPVLGPDVNESKNGFTVNAEGEIRFGMAAIKGAGSAAVDEIIKEREENGPFKN 1121 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQSLDN-------IQKYAQWVE 916 L DF RV+SK LN++ +E+L AG DCF + R Q L++ D KYAQ V+ Sbjct: 1122 LFDFAKRVNSKALNKKTMEALAMAGGFDCFPEHHRRQYLEAADGDLTLIEKATKYAQKVQ 1181 Query: 917 KNRTNKHENIFAHEKGTFSDKI----TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + + ++F G+ + +E FS + E+ V+G Y SGHPLD Y+ Sbjct: 1182 QEEESAQVSLFGGSSGSMDIPLPSVAPMEPFS---QLQQLNIEKEVVGLYISGHPLDQYR 1238 Query: 973 PILRKM---GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 + + + + I+LA V S + T+ G G +T + Sbjct: 1239 LEIESFTNANLPDLNDIDSFKNKKEIKLAGSVSSFAHRTTKNGKPFGTLTMED 1291 >gi|159037409|ref|YP_001536662.1| DNA polymerase III subunit alpha [Salinispora arenicola CNS-205] gi|157916244|gb|ABV97671.1| DNA polymerase III, alpha subunit [Salinispora arenicola CNS-205] Length = 1177 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 379/1068 (35%), Positives = 571/1068 (53%), Gaps = 58/1068 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YS+L+GA L ++ ++ PA+A+TD N+ A +F ++A AAG+ P Sbjct: 4 SFAHLHVHTEYSMLDGAARLKDLFAEVNRQGMPAVAMTDHGNMHGANDFYKQAMAAGVTP 63 Query: 70 IIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 I+G + + + + + + + + G L +L SR Sbjct: 64 ILGIEAYVAPESRFHKQRVRWGRPEQKSDDVSGSGGYTHMTIWARNKVGLHNLFKLTSRS 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + R+ L E +GL+ TG SG + A K ++ +FG Sbjct: 124 FTEGFFVKWPRMDAELLAE-HADGLMATTGCPSGEVQTRLRLEQYDEALKAAARYQDIFG 182 Query: 180 -DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 + ++ + H G D R ++ ++++ ++P V TN++ + +E EAHDVL+ V Sbjct: 183 KENFFLEVMDH-GIDIERRVRQELAEISHKLDIPPVVTNDTHYTHQEQSEAHDVLLCVQT 241 Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSI-FSDLP-EALENTVEIARRCSFILQVH-APIL 292 + VS +R R +Y+K+ EM +I SDL + NT+ +A + ++ Sbjct: 242 AANVSDPNRFRFDGSGYYIKSADEMRAIDSSDLWLQGCRNTLLVAEKVDPTGMFDFRNLM 301 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 PRF E + +E+ R + GL R G + + ++ ++EL VI +M Sbjct: 302 PRFPVPEGE----TDESWFRKETFKGLARRFPDGV------PETHVKQAEYELGVIIQMG 351 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F YFL+VADFIQWAK I VGPGRGS AGS+ AYAL ITD+DPL L+FERFLNP+R Sbjct: 352 FPSYFLVVADFIQWAKGEGIAVGPGRGSAAGSLVAYALGITDLDPLPHGLIFERFLNPER 411 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD DIDF + RR EVI+YV K+G ++VAQI TFG+++AKAA++D R L PY+ Sbjct: 412 VSMPDVDIDFDERRRGEVIKYVTEKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVG 471 Query: 473 DRLCKLIPNDPA---HPVSLQAIAD--DSRFREAR------LADPSVDRLLEISQKLEGL 521 DR+ K +P PA + L I D SR+ EA +DP V ++++ ++ +EGL Sbjct: 472 DRITKAMP--PAVMGKDIPLTGIFDPKHSRYAEAGEIRGLYESDPDVKKVIDTARGIEGL 529 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HAAG+++ P+ +P+ R +TQF+ E GL+K DFLGL+ LT+ Sbjct: 530 IRQTGVHAAGVIMSAEPIIDHIPLMRRDADGAIITQFDYPTCESLGLLKMDFLGLRNLTI 589 Query: 582 LQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L + + G VDL +P DD TY LL+ TLG+FQL+ MR L M+PD Sbjct: 590 IDDALKNIESNHGRTVDLLKLPLDDTPTYELLSRGDTLGVFQLDGGPMRSLLRTMKPDNF 649 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQ 694 EDI A+++LYRPGP+ ++ Y RKNG ++I IHP L +P+ L T G+I+YQEQ Sbjct: 650 EDISAVLALYRPGPMGANSHTNYALRKNGLQEITPIHPELAEPLEEILGPTYGLIVYQEQ 709 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V + AQ+L+GYSL +AD+LRRAMGKK KE +DK+ F G NG S ++++L Sbjct: 710 VQRAAQVLAGYSLGKADLLRRAMGKKKKEVLDKEFVPFRDGMRGNGYSDEAIQTLWDILV 769 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FADY FNK+H A Y ++SY T ++K +YP E++AA +T D+ +K+ + + R+ I Sbjct: 770 PFADYAFNKAHTAGYGLVSYWTGYLKANYPAEYMAALLTSVGDDKDKMALYLSECRRMGI 829 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 Q++PP VNT F I + LAAI+ VG IM +K + DF S+VD Sbjct: 830 QVLPPDVNTSAGPFTPVGRDIRFGLAAIRNVGANVVSAIMRCRGEKSAYTDFYDFLSKVD 889 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAH--- 929 + N++ +ESL+ AGA D + R LL D I YA K +++ A Sbjct: 890 AVVCNKKTIESLIKAGAFDSLDHPRRGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFAD 949 Query: 930 -EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEE 985 E GT + + + + E+ +LG Y S HPL + +L K I E Sbjct: 950 PEVGTSTTVMPAIVDGEWDKREKLAFEREMLGLYVSDHPLFGLEHVLGKEADTTIAALSE 1009 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + LA ++ Q++ T++G T + A E FFP Sbjct: 1010 EGTIPDGTVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057 >gi|34539911|ref|NP_904390.1| DNA polymerase III subunit alpha [Porphyromonas gingivalis W83] gi|34396222|gb|AAQ65289.1| DNA polymerase III, alpha subunit [Porphyromonas gingivalis W83] Length = 1228 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 381/1116 (34%), Positives = 596/1116 (53%), Gaps = 111/1116 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58 FVHL VHS +SLL+G ++N+++DK AD P IA+TD +F EF Sbjct: 4 FVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSGHN 63 Query: 59 -SQKACAAGI-----------------------------------QPIIGCQLDIDMQDN 82 + K C + +PI+GC+ + Sbjct: 64 ATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARRTR 123 Query: 83 LKMTNQGKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 NQ P+ SI +LL GY+ LI++VS + Q + RI Sbjct: 124 FDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQYYRP-RIDKEL 182 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--- 192 LQ+ EG+I+ + G I + AE+ +L FK+LFGD Y+ +QRH + Sbjct: 183 LQKY-HEGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEIQRHETHNPL 241 Query: 193 ---DRYRESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 D + + Q +++L + ++ATN+ F +EED EAHD L+ ++ + + Sbjct: 242 GNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDPN 301 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDI 303 R R T ++K +EM +IF DLPE L NT+EI + + ++P F I E Sbjct: 302 RMRYTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVELYSIDNKALMPDFPIPPE---- 357 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 K++++ LR G + + + + ++R+DFEL I M F GYFLIV DF Sbjct: 358 YKDDDDYLRFLTYEGARRKYGEDL------SDEIKERIDFELETIKGMGFPGYFLIVQDF 411 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I A+ + VGPGRGS AGS AY L ITDIDP+++ LLFERFLNPDR+SMPD D+DF Sbjct: 412 IAAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFD 471 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND- 482 D R E++R+V KYG ERVA IIT+G++ K++++DV R ++P + +RL KL+P+ Sbjct: 472 DDGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLLESNRLAKLVPDKI 531 Query: 483 PAHP-VSLQ-AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P V+L+ AI ++A L+ V R L+ +Q LEG R+ HA GI+IG + Sbjct: 532 PGEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDI 591 Query: 540 SQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 S +VP+ +D + +L VTQ+ IE+ GLIK DFLGLKTL++++++L + +R G+ Sbjct: 592 SDVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGI 651 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +++ IP DD TY L + T+G FQ ES GM++ L +QP ED+IA+ +LYRPGP Sbjct: 652 DLNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGP 711 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RK+G+E I P ++ LKET GV +YQEQVM +++ L+G++ ++D LR Sbjct: 712 MDYIPSFIARKHGREPIDYDLPEMEEYLKETYGVTVYQEQVMLLSRKLAGFTRGQSDELR 771 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK+ E+M+ K +F+ G +KNG + + I+ KFA Y FNKSHA Y+ ++Y Sbjct: 772 KAMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAY 831 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833 QTA++K +YP E++A +++ ++N+ +I K + + I ++ P VN + F V N Sbjct: 832 QTAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANG 891 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + L+A+KGVG+ I+ E A+ + + DF R++ NR+ +ESL AGA D Sbjct: 892 DIRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRKTMESLALAGAFD 951 Query: 893 CFGYSRMQLLQS---------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 F SR + + + + +Y V++ + ++ ++F E+ + Sbjct: 952 SFALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEEDLMIPRPQPSPT 1011 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------TIRGNNIR 996 N R E+ ++G Y S +P+ Y+ IL Y + A ++ G N+ Sbjct: 1012 EPWNDLERLNKERELVGLYLSSNPMAQYQVILDH-----YCNTHAADLTDPDSLVGKNLV 1066 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 LA +V Q +R + +T + + E F Sbjct: 1067 LAGIVTKAFQGISRSNNPYSKITLEDLSGTGEIPLF 1102 >gi|218264823|ref|ZP_03478511.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii DSM 18315] gi|218221765|gb|EEC94415.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii DSM 18315] Length = 1266 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 374/1129 (33%), Positives = 589/1129 (52%), Gaps = 120/1129 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VH+ YSLL+G S++ ++DK D PAIA+TD +F EF K +P+ Sbjct: 4 FIHLHVHTQYSLLDGQASIDALIDKAQKDGMPAIAVTDHGVMFGIKEFFNKVSKKNGKPL 63 Query: 71 IGCQLDID-----MQDNLKMTNQGKTPFPTVPS--------------------------- 98 G D + ++ ++T++ + +P+ Sbjct: 64 -GAIKDYEKELKELKSKTELTSEEQARLEEIPAKIEEEKKKIFKPIFGCECYCARNGRHS 122 Query: 99 ------------IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146 +++L GY+ LI++VS + +G L E E LI+ Sbjct: 123 KLASQNDRSGWHLIVLAKNLNGYKNLIKMVSLSWT--EGFYGRPRIDKELLEKYHEDLII 180 Query: 147 LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV------ 200 + G I + AE+ +L FK LFG+ Y+ +QRH +D V Sbjct: 181 CSACIGGEIPQHILNGRMDKAEESVLWFKNLFGEDYYLEIQRHETHDPNAAQDVYPHQVT 240 Query: 201 -----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255 ++LA H++ ++ATN+ F++ ED EAHD L+ ++ + +R R T ++K Sbjct: 241 ANKVILELARKHDIKVIATNDVHFVNAEDAEAHDRLICLSTGKDLDDPNRMRYTKQEWMK 300 Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEKE 299 +EM ++FSD+PEAL NT+EIA + F H PI+P +F E++ Sbjct: 301 TTAEMNTLFSDIPEALSNTLEIADKVEFYSIDHGPIMPTFAIPEDFGTEEGYRRKFTEQD 360 Query: 300 CDD----------IQKEEENELRNKAVAGLE--------------VRLAQGAIAKGYHAQ 335 D + EE + K + G E + I G Sbjct: 361 LFDEFTRDENGNVVLSEEAAHDKIKKLGGYEKLYRIKLEADYLKKITYDGAKICYGDELN 420 Query: 336 D-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTIT 393 D ++RL+FEL+++ M F GYFLIV DFI+ A++ + VGPGRGS AGS AY L IT Sbjct: 421 DEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGIT 480 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 IDP+++ LLFERFLNPDR+S+PD D DF D R EV+R+V KYG ERVA IIT+G++ Sbjct: 481 RIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTMA 540 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSVD 509 K+A++DV R ++P ++ +RL KL+P+ + AI +EA DP Sbjct: 541 TKSAIKDVARVQKLPLAESNRLAKLVPDKIPDMKKFKLKDAINYVPELKEAATGNDPLAR 600 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565 L+ +Q LEG R+ HA G++IG +S +VP+ +D ++ VTQ+ IE+ Sbjct: 601 DTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIEE 660 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTL++++++++ + G ++D+ I +D TY L T G FQ E Sbjct: 661 TGLIKMDFLGLKTLSIIKEAIENIRLTTGHELDIDHISLEDPATYKLYCDGKTTGTFQFE 720 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L+ +QP ED+IA+ +LYRPGP+D I + RK GKE+I P+++ LK+ Sbjct: 721 SAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLKD 780 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+ E+M+ K +F++G NG + Sbjct: 781 TYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGKTNGYKEE 840 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA ++ + N+ I K Sbjct: 841 TLQKIWSDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPSEYMAAVLSRSLSNIVDITK 900 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPF 862 F + + IQ++ P VN + F V N+ I + L A+KGVG ++I+E + P+ Sbjct: 901 FMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGEAAVQNIIEERRKNGPY 960 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWV 915 + DF RV N++ +ESL AGA D FG R Q L+ + +Y Sbjct: 961 KDIFDFVERVSLTACNKKNIESLALAGAFDNFGIQREQFFAETGKGEIFLETLVRYGNKF 1020 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 + +++ ++F + K + K + R E+ ++G Y S HPLD Y+ IL Sbjct: 1021 QTDKSTATNSLFGGDAFIAIAKPEIPKCERWSDLERLNKEKELVGIYLSAHPLDEYRIIL 1080 Query: 976 RKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 + G E + G ++ +V ++ T+KG+ G + + Sbjct: 1081 TYVCNTGMAEINDKENLVGKDLLFGGIVTDFREGMTKKGNPYGIIKIED 1129 >gi|220912350|ref|YP_002487659.1| DNA polymerase III subunit alpha [Arthrobacter chlorophenolicus A6] gi|219859228|gb|ACL39570.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6] Length = 1185 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 382/1050 (36%), Positives = 560/1050 (53%), Gaps = 72/1050 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA L + D+ PA+A TD LF A +F QKA A GI+P Sbjct: 7 SFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWQKAQAKGIKP 66 Query: 70 IIGCQLDID----MQDNLKM----TNQGKTPFPTVPS---IVLLVSTAEGYQRLIELVSR 118 IIG + + D ++ NQ K S + LL G + L S Sbjct: 67 IIGVEAYVTPGTARGDKTRVRWGEENQRKDDISGGGSYTHMTLLSYNNVGMRNLFRASSI 126 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 L + R+ L +EGLI TG SG + + A + F+ +F Sbjct: 127 ASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTRLRLGQYREAVEAAAEFRDIF 185 Query: 179 GDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G Y G D R +++LA LPLVATN+ + E D +AH+ L+A+ Sbjct: 186 GAENYFCELMDHGLDIERRVTGDLLRLAKELNLPLVATNDLHYTHEHDAKAHEALLAIQS 245 Query: 237 STVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + + + +YLK+ EM +F D PEA +NT+ IA RC +A Sbjct: 246 GSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEVSFNTNA 305 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +PRF +D E + L + GL+ R +G + R++ D+EL VI Sbjct: 306 NFMPRFPCPPGED----ETSWLVKEVDKGLQYRYPKGI------PDEVRKQADYELGVIT 355 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPLR L+FERFLN Sbjct: 356 SMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLRHGLIFERFLN 415 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+SMPDFD+DF RR EVI YV KYG ERVA I+T+G+++ K AL+D R L P+ Sbjct: 416 PDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSRVLGYPF 475 Query: 470 SQVDRLCKLIP----------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 S ++L K +P D +P S + ++ FR+ DP ++ E + +E Sbjct: 476 SMGEQLTKALPPAVMAKDIPLADIQNPES-KRYSEAGDFRQLVSTDPEAAKVFETALGIE 534 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R HAAG+++ P+ ++P+ R + +TQF+ E GLIK DFLGL+ L Sbjct: 535 GLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLRNL 594 Query: 580 TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +L+ + RG+ +DL + DD +Y LL TLG+FQL+ MR L+ M+PD Sbjct: 595 TIISDALENIKMNRGIDLDLENLELDDAPSYELLARGDTLGVFQLDGGPMRSLLKLMKPD 654 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692 EDI A+++LYRPGP+ + Y RKNG ++++ IHP ++ LKE T G+I+YQ Sbjct: 655 NFEDISAVLALYRPGPMGANAHTDYALRKNGIQEVIPIHPELEEPLKEILGGTYGLIVYQ 714 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ F G NG S ++++ Sbjct: 715 EQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVKTLWDI 774 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L F+DY FNK+H+AAY VISY TA++K HY E++AA +T D+ +K + + R+ Sbjct: 775 LLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLNECRRM 834 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871 I ++PP VN ++F I + + AI+ VG ++ A ++ F S +D+ + Sbjct: 835 GITVLPPDVNESALNFTPVGTDIRFGMGAIRNVGVNAVEAMVAARESEGAFTSFKDYLMK 894 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + N+R +ESL+ +GA D G+ R L + +++N ++FA Sbjct: 895 VPAVVCNKRTIESLIKSGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDLFA--- 951 Query: 932 GTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 F + + S+E + + E+ +LG Y S HPL + +L + E Sbjct: 952 -GFEEAESEASLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGVLSQHA----E 1006 Query: 985 ESVATIRGNN-------IRLAAMVVSKQQK 1007 S+ TI G + + +A M+ S ++ Sbjct: 1007 MSITTILGEDGPQDGAILTIAGMITSLSRR 1036 >gi|163841216|ref|YP_001625621.1| DNA polymerase III subunit alpha [Renibacterium salmoninarum ATCC 33209] gi|162954692|gb|ABY24207.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC 33209] Length = 1176 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 377/1042 (36%), Positives = 564/1042 (54%), Gaps = 65/1042 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA L ++ + A ++A TD +F A +F KA AGI+P Sbjct: 7 SFVHLHNHTEYSMLDGAARLTDLFEHTAELGMNSLATTDHGFVFGAFDFWSKAKNAGIKP 66 Query: 70 IIGCQLDID---MQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRMY 120 IIG + + ++ G V + L T +G L + S + Sbjct: 67 IIGVEAYLTPGTAHNDRTRVKWGDGSGKDVAGAGAYTHMTLWSETTQGMHNLFRM-SSLA 125 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 L+ R+ LQ G +GLI TG SG + + A + F+ +FG Sbjct: 126 SLEGYLYKPRMDRDLLQTYG-KGLIASTGCPSGEVPTKLGLGLYKEAVQAASDFQDIFGK 184 Query: 180 DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 Y L H G D R ++ +++LA LPLVATN+ + ED AH L+ V Sbjct: 185 GNFYCELMDH-GLDIERNVKADLLKLAKELNLPLVATNDLHYTHAEDASAHAALLCVQSG 243 Query: 238 TVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + ++ R + D YLK+ EM +F D P+A +NT+ IA RC A +PRF Sbjct: 244 STLADPKRFKFDADEFYLKSPLEMRELFRDFPDACDNTLLIAERCEVAFDTGASYMPRFP 303 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E ++ E++ + GL R G A D R++ +FE+ VI +M F GY Sbjct: 304 VPEGEN----EQSWFVKEVEKGLHYRYPGGIPA------DVRKQAEFEVGVITQMGFPGY 353 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+ L+FERFLNP+R+SMP Sbjct: 354 FLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLKHGLIFERFLNPERVSMP 413 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DF RR EVIRYV KYG ERVA I+T+G+++AK AL+D R L PYS +RL Sbjct: 414 DFDVDFDDRRRGEVIRYVTEKYGDERVAMIVTYGTIKAKQALKDSSRVLGYPYSTGERLT 473 Query: 477 KLIPND---------PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 K +P D H + ++ RE DP ++ + + +EGL R Sbjct: 474 KAMPPDVMGKGMALTDVHNKEAKRYSEAEELRELIKTDPDSQKVFDTAIGIEGLKRQWGV 533 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAG+++ PL ++P+ R + +TQF+ E GLIK DFLGL+ LT++ +++ Sbjct: 534 HAAGVIMSSDPLIDIIPIMRREQDGQIITQFDYPTCEGLGLIKMDFLGLRNLTIISDAIE 593 Query: 588 FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + R +DL + DD +Y LL TLG+FQL+ MR L+ M+PD EDI A+ Sbjct: 594 NIKLNRDFDLDLEGLELDDVPSYELLARGDTLGVFQLDGGPMRSLLKLMKPDNFEDISAV 653 Query: 647 VSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQ 700 ++LYRPGP +++ Y RKN ++I IHP ++ L++ T G+I+YQEQVM AQ Sbjct: 654 LALYRPGPMGVNSHTNYALRKNKLQEITPIHPELEAPLEDILGTTYGLIVYQEQVMAAAQ 713 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 L+G+SL +AD+LRRAMGKK K E+DKQ+ F +G NG S+ ++++L FADY Sbjct: 714 KLAGFSLGQADILRRAMGKKKKSELDKQQADFFAGMKTNGYSQAAMDALWKVLESFADYA 773 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNK+H AAY +ISY TA++K HY E++AA +T D+ +K+ + + R+ I ++PP Sbjct: 774 FNKAHTAAYGLISYWTAYLKEHYAAEYMAALLTSVGDDKDKLAIYLNECRRMGITVLPPD 833 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879 VN V+F D I + + AI+ VG + ++ A +K F++ D+ +V + N+ Sbjct: 834 VNESSVNFTPVDTDIRFGMGAIRNVGANVVQAMVGAREEKGAFENFSDYLLKVPAVVCNK 893 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R +ESL+ AGA D G+ R L+ + +++N ++FA FSD+ Sbjct: 894 RTIESLIKAGAFDSLGHPRRALVAVHEEAIDSVVVLKRNEAVGQFDLFA----GFSDEEA 949 Query: 940 LEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 FS + + + E+ +LG Y S HPL + +L + E +++ + G Sbjct: 950 EPGFSTDVPDLPEWEKKDKLAFERDMLGLYVSDHPLRGLEGVLSQHA----EHTISYLIG 1005 Query: 993 NN-------IRLAAMVVSKQQK 1007 + + +A M+ S ++ Sbjct: 1006 EDGLSDGAIVTIAGMITSLSRR 1027 >gi|88802679|ref|ZP_01118206.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii 23-P] gi|88781537|gb|EAR12715.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii 23-P] Length = 1445 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 358/1066 (33%), Positives = 567/1066 (53%), Gaps = 68/1066 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQKACA 64 F HL H+ YS+L+ + + I+ A D PA+A+TDT N+ +A F K Sbjct: 260 FSHLHNHTQYSVLQSTMEIGQIVKAAADDNMPAVAMTDTANMMAAFHFVSAILNHNKTAK 319 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 ++PI+GC+ ++ + K +Q F +VLL GY L ++ S + +D Sbjct: 320 TPMKPIVGCEFNV--CGDHKNKSQKDNGF----QVVLLAKNKRGYHNLAKM-SSIAFVDG 372 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI +++ E +I+LTG G + + AE+ L+ +K+ F D LY+ Sbjct: 373 FYYVPRIDREIIKKY-KEDIIVLTGNLYGEVPSKILNLGEKQAEEALIWWKEEFKDDLYI 431 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA----HSTV 239 L RH D + ++ + H + ++ATNN+ +L ++D AHD+L+ V +T Sbjct: 432 ELMRHDQQDEKIVNETLLTFSKKHNIKVIATNNTFYLEKKDANAHDILLCVKEGEKQATP 491 Query: 240 VSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF- 295 + + R ++Y K+ EM ++F+DLPEA+ N EI + +LP F Sbjct: 492 IGKGRGYRYGLPNQEYYFKSSEEMKTLFADLPEAISNIQEIVDKIEIYTLARDVLLPAFD 551 Query: 296 -------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 I E D ++ E N L++ G E R G ++RLDFEL+VI Sbjct: 552 IPDEFKDIADESDKGKRGENNFLKHLTFVGAEKRY-------GDITASIKERLDFELSVI 604 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 + + GYFLIV DFI+ A+ ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFL Sbjct: 605 EKTGYPGYFLIVEDFIREARNMDVAVGPGRGSAAGSVVAYCLWITNIDPIKYDLLFERFL 664 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD DIDF + R V+ YV NKYG +VAQIIT+G++ AK+++RD R L +P Sbjct: 665 NPERVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIITYGTMAAKSSIRDTARVLDLP 724 Query: 469 YSQVDRLCKLIP---------NDPAHPVSLQAIADDSR-----FREARLADPSVDRLLEI 514 + DR+ KLIP +DP + + + + R + V + Sbjct: 725 LFEADRIAKLIPLIKLKNIFGDDPKSKGKVAGLRSEEKQLVEELRSMSFGNDLVSETINK 784 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + LEG R+ HA G++I ++ VP+ SD+ VTQF+ +E AGL+K DFL Sbjct: 785 ATMLEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDMYVTQFDNSVVESAGLLKMDFL 844 Query: 575 GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GLKTLTL++ ++ + A+ V +D P DD +TY L T+GIFQ ES GM++ + Sbjct: 845 GLKTLTLIKDTVKIVKARHNVDLDPDSFPLDDVKTYELFQRGETVGIFQYESPGMQKHMR 904 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 ++P D+IA+ +LYRPGP++ I + NRK+G E I P ++ L ET G+ +YQE Sbjct: 905 SLKPTVFADLIAMNALYRPGPMEYIPSFINRKHGTEDIAYDLPAMEEYLAETYGITVYQE 964 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVM ++Q L+ ++ EADVLR+AMGKK ++K K +F+ AS+ G I++ Sbjct: 965 QVMLLSQKLADFTKGEADVLRKAMGKKQIAVLNKMKPKFLEQASEKGHDAEKLEKIWKDW 1024 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSH+ YA I+YQTA++K HYP E++A+ ++ M++++ + F ++ ++ Sbjct: 1025 EAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMNDIKSVSFFMEECKRME 1084 Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871 + + P +N + F V D + + +AA+KGVG R I+ E + S+ D R Sbjct: 1085 LPVFGPDLNESFLKFSVNDEGAVRFGMAAVKGVGAGAVRAIIKEREEHGNYTSIFDLAKR 1144 Query: 872 VDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKH 923 VD + N++ +SLV AGA D F R Q + L+ KY ++N + Sbjct: 1145 VDLRAANKKSFDSLVKAGAFDSFEDTHRAQYFHTDEKGLTFLERAMKYGSKYQENENSAQ 1204 Query: 924 ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR--KMGIK 981 ++F + + + + E+ V+G Y S HPLD +K L+ +K Sbjct: 1205 VSMFGEASSVQFPEPDIPECDTWGTMELLSQEKEVIGIYISAHPLDDFKNELKFCNASLK 1264 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 ++ ++ N+ A ++ Q + ++ G GW F+ A++Y Sbjct: 1265 YFKADLSKFINLNMAFAGIITDVQHRVSKAGK--GWAMFT--AEDY 1306 >gi|307069536|ref|YP_003878013.1| putative DNA polymerase III subunit alpha [Candidatus Zinderia insecticola CARI] gi|306482796|gb|ADM89667.1| putative DNA polymerase III, alpha subunit [Candidatus Zinderia insecticola CARI] Length = 1131 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 334/906 (36%), Positives = 548/906 (60%), Gaps = 44/906 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL++H+ YS+++ + +N I+ D+Q ++AITD +N+F A++F +++ GI+PI Sbjct: 4 FTHLRLHTEYSIVDSLVKINEIIKLAKKDKQESLAITDLSNIFGAIKFYKESIKNGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC L I+ + N K PF +++L GY +L +L+S+ ++ + + + Sbjct: 64 IGCDLFIENKIN------KKKPF----RLLILSKNYNGYLQLCKLISKSWIYNLKDEKPQ 113 Query: 131 ICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQV--AEKRLLTFKKLFGDRLYVNLQ 187 I SWL++I LI L+G S D F+ N + AE +KK+F + ++ +Q Sbjct: 114 IKKSWLKKINKNSNLIALSGYKSS--DLLFYINKKKFKKAENCAKKWKKIFNNLYFIEIQ 171 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + + ++++ +P+VAT+ F ++++ AH++ + ++ + Sbjct: 172 NINIKNNEIFNYNLIKIGNKLNIPIVATHPIQFCYKKEFIAHEIRYNIYKKKKLNN-SKY 230 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + K + E+ +F + A++N+ +I++ C+ I + +L + I Sbjct: 231 HFNKEQNFKTQIEINKLFVNNLIAVKNSYKISKMCNLI--IPKGVLKLPKYNKKKKIN-- 286 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADF 363 +NEL L+++ G + + ++ Y++RL FEL +I++ FS YFL+V DF Sbjct: 287 -DNEL-------LKIKTKIGLNKRLKNKKNLKIYKKRLKFELKIISKTNFSNYFLMVNDF 338 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAKK NI +GPGRGSGA S+ AY L ITDIDP+++ L+FERFLNP+R+S PDFDIDFC Sbjct: 339 IKWAKKKNINIGPGRGSGASSLIAYCLFITDIDPIKYKLIFERFLNPERISFPDFDIDFC 398 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q +RD +I+Y++ KYG V+QIITFG + AK+++RDVGR L + Y+ + + KLI N Sbjct: 399 QKKRDIIIKYIKKKYGVNNVSQIITFGKIAAKSSIRDVGRVLGLSYNFCNNIVKLISNKK 458 Query: 484 AHPVSLQAIADDSRFREAR-LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + ++L+ I +++ F + + L + + +L+ S ++EG+ ++ HA GI+I L++ Sbjct: 459 YYNLNLKEIVENNYFLKKKILNNKIIKKLIFFSIQIEGIIKNIGIHAGGILISKNNLNKY 518 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---S 599 +Y+ + ++ Q + + +E GLIKFDFLGL TLT++ ++ + + K+ L + Sbjct: 519 CALYKHSKDNIITIQNDKEDLEFLGLIKFDFLGLATLTIIDETNKNIKKINPKIKLISWN 578 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I F D +TY LL T+G+FQLES G++ L+ +C+EDI A++SLYRPGPI I Sbjct: 579 KISFKDKKTYKLLNNANTIGVFQLESIGIQNILKKANINCLEDITAIISLYRPGPIKLIK 638 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RKNG K + I +L ET G++IYQEQVM++A++++ YS+ AD+LRR + K Sbjct: 639 KFYKRKNG-YKFKFFNEKIKNVLSETYGIMIYQEQVMEVAKIIANYSMGSADLLRRIISK 697 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K +EM K ++ FI GA KN I+ A IF L+ KFA YGFNKSHA AYAVISY TA++ Sbjct: 698 KNLKEMHKNRKLFIKGALKNKINLKTANKIFNLMEKFAGYGFNKSHATAYAVISYYTAYL 757 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDF--KVGDNRIY 836 K+++P EF++A+++L ++N+ KIK +DA F I I+PP++N F + +N Y Sbjct: 758 KSNFPNEFISANLSLSINNINKIKFLIKDAINNFKINILPPNINYSKYKFIPIIKNNIFY 817 Query: 837 --YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK--LNRRVLESLVFAGALD 892 Y L+AIKG+G + I+ K F +L DF R+ K +N+RVL SL+++G+LD Sbjct: 818 IRYGLSAIKGLGKIAIKLILNKRKKKIFKNLYDFIFRIIKNKNLINKRVLNSLIYSGSLD 877 Query: 893 CFGYSR 898 F +R Sbjct: 878 IFNKNR 883 >gi|325286607|ref|YP_004262397.1| DNA polymerase III subunit alpha [Cellulophaga lytica DSM 7489] gi|324322061|gb|ADY29526.1| DNA polymerase III, alpha subunit [Cellulophaga lytica DSM 7489] Length = 1479 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 368/1097 (33%), Positives = 566/1097 (51%), Gaps = 102/1097 (9%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +S F HL H+ +S+L+ +S+ +++ A + PA+A+TD N+ A F Sbjct: 257 ESAEFSHLHNHTQFSILQSTISVPDLIKATAKNNMPAVAMTDHANMMGAFHFVNGVLNHN 316 Query: 67 -------------------------------------IQPIIGCQLDI-DMQDNLKMTNQ 88 I PIIGC+ + + N + Sbjct: 317 KGVKSRNDANEIRYEATQENRLEEGEEPLHEFIPEKEITPIIGCEFQVCEDHTNKSQKDN 376 Query: 89 GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148 G IV L GY L ++ S ++ GK V + E E LI+LT Sbjct: 377 GY-------QIVFLAKNKNGYHNLAKMSSIAFV--DGKYYVPRIDKKIIEQYKEDLIVLT 427 Query: 149 GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTH 207 G G + AE LL +K+ FGD LY+ + RH D R +QV ++ A H Sbjct: 428 GNLYGEVPSLVLNVGENQAEDALLWWKEQFGDDLYMEIMRHGQEDEDRVNQVLIKFAKKH 487 Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEM 260 + LVATNN+ ++ +E+ AHD+L+ V ST + + R ++Y K+ EM Sbjct: 488 NVKLVATNNTYYVEKENAYAHDILLCVKDGEKQSTPIGRGRGYRYGLPNQEYYFKSSDEM 547 Query: 261 VSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-------IEKECDDIQKEEENE-LR 312 +F D+PEA+ N E+ + +LP F E++ D K EN+ LR Sbjct: 548 KELFKDIPEAITNIQEVVDKIETFTLARDVLLPAFDIPEEFVFEEDKIDGGKRGENKFLR 607 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + G ++R G + +RLDFEL VI + + GYFLIV DFI+ A+K ++ Sbjct: 608 HLTYEGAKIRY-------GEITPEIDERLDFELKVIEKTGYPGYFLIVEDFIRAARKMDV 660 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF + R V+ Sbjct: 661 SVGPGRGSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMD 720 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--DPAHPVSLQ 490 YV +KYG +VAQIIT+G++ AK+++RD RAL +P DR+ KLIPN + + Sbjct: 721 YVIDKYGSNQVAQIITYGTMAAKSSIRDTARALDLPLGDADRMAKLIPNMSKLKKIIGVD 780 Query: 491 AIADDSRFREARLADPSVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDR 537 S+F LA ++ LLEIS+ LEG R+ HA G++I Sbjct: 781 EKTLKSKFNSEELA--KINELLEISEGDDLESETLNQAYVLEGSVRNTGIHACGVIITPD 838 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596 +++ VP+ SD+ TQF+ +E AGL+K DFLGLKTLTL++ ++ + A+ GV++ Sbjct: 839 DITKFVPVALAKDSDMYCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVEL 898 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D P DD +TY L T+G+FQ ES GM++ + ++P D+IA+ +LYRPGP++ Sbjct: 899 DPENFPLDDQKTYELFQRGETVGVFQYESPGMQKHMRSLKPTVFADLIAMNALYRPGPME 958 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + RK+G E+I+ + L ET G+ +YQEQVM ++Q L+ ++ EADVLR+A Sbjct: 959 YIPSFIARKHGTEEIIYDLDACEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKA 1018 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK K +DK K +FI AS G + I++ FA Y FNKSH+ YA I+YQT Sbjct: 1019 MGKKQKHVLDKMKPKFIEQASAKGHAVDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQT 1078 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRI 835 A+ K HYP E++AA ++ M++++ + F ++ ++ ++++ P VN F V D + Sbjct: 1079 AYCKAHYPAEYMAAVLSNNMNDIKTVTFFMEECKRMGLEVLGPDVNESYYKFAVNDAGAV 1138 Query: 836 YYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + + A+KGVG I+E D P+ S+ D R+D + N+R E+L AG D F Sbjct: 1139 RFGMGAVKGVGRGAVETIVENRKKDGPYKSVFDLAKRIDLRAANKRAFENLTLAGGFDSF 1198 Query: 895 GYS-RMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 G + R Q L L+ + KY ++++ + ++F + + Sbjct: 1199 GDTHRAQYLHDEGDGITFLEKVMKYGSKFQESQNSSQVSLFGEASDVQIPEPVVPPCEEW 1258 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSK 1004 + + E+ V+G Y SGHPLD +K ++ G ++ + +A ++ Sbjct: 1259 GTMEKLRKEKEVVGIYISGHPLDDFKSEIKSFCNSGIAAVHNMEQYVNKELSIAGVITDV 1318 Query: 1005 QQKKTRKGSRIGWVTFS 1021 Q + ++ G GW FS Sbjct: 1319 QHRVSKNGK--GWAMFS 1333 >gi|154491985|ref|ZP_02031611.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC 43184] gi|154088226|gb|EDN87271.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC 43184] Length = 1266 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 376/1129 (33%), Positives = 591/1129 (52%), Gaps = 120/1129 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VH+ YSLL+G S++ ++DK D PAIA+TD +F EF K +P+ Sbjct: 4 FIHLHVHTQYSLLDGQASIDALIDKAQKDGMPAIAVTDHGVMFGIKEFFNKVSKKNGKPL 63 Query: 71 IGCQLDID-----MQDNLKMTNQGKTPFPTVPS--------------------------- 98 G D + ++ ++T + + +P+ Sbjct: 64 -GAIKDYEKELKELKSKTELTAEEQARLEEIPAKIEEEKKKIFKPIFGCECYCARNGRHS 122 Query: 99 ------------IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146 +++L GY+ LI++VS + +G L E E LI+ Sbjct: 123 KLASQNDRSGWHLIVLAKNLNGYKNLIKMVSLSWT--EGFYGRPRIDKELLEKYHEDLII 180 Query: 147 LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV------ 200 + G I + AE+ +L FK LFG+ Y+ +QRH +D V Sbjct: 181 CSACIGGEIPQHILNGRMDKAEESVLWFKNLFGEDYYLEIQRHETHDPNAAQDVYPHQVT 240 Query: 201 -----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255 ++LA H + ++ATN+ F++ ED EAHD L+ ++ + +R R T ++K Sbjct: 241 ANKAILELARKHNIKVIATNDVHFVNAEDAEAHDRLICLSTGKDLDDPNRMRYTKQEWMK 300 Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEKE 299 +EM +IFSD+PEAL NT+EIA + F H PI+P +F E++ Sbjct: 301 TTAEMNTIFSDIPEALSNTLEIADKVEFYSIDHGPIMPTFAIPEDFGTEEEYRQKFTEQD 360 Query: 300 CDD----------IQKEEENELRNKAVAGLE----VRLAQGAI-------AKGYHAQDY- 337 D + EE + K + G E ++L + AK + D Sbjct: 361 LFDEFTRDENGNVVLSEEAAHDKIKKLGGYEKLYRIKLEADYLKKITYDGAKICYGDDLN 420 Query: 338 ---RQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTIT 393 ++RL+FEL+++ M F GYFLIV DFI+ A++ + VGPGRGS AGS AY L IT Sbjct: 421 DEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGIT 480 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 IDP+++ LLFERFLNPDR+S+PD D DF D R EV+R+V KYG ERVA IIT+G++ Sbjct: 481 RIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTMA 540 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSVD 509 K+A++DV R ++P ++ +RL KL+P+ + AI +EA DP Sbjct: 541 TKSAIKDVARVQKLPLAESNRLAKLVPDKIPDMKKFKLKDAINYVPELKEAATGNDPLAR 600 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565 L+ +Q LEG R+ HA G++IG +S +VP+ +D ++ VTQ+ IE+ Sbjct: 601 DTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIEE 660 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTL++++++++ + G +D+ I +D TY L T G FQ E Sbjct: 661 TGLIKMDFLGLKTLSIIKEAIENIRLTTGHDLDIDHISLEDPATYKLYCDGKTTGTFQFE 720 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L+ +QP ED+IA+ +LYRPGP+D I + RK GKE+I P+++ LK+ Sbjct: 721 SAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLKD 780 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+ E+M+ K +F++G NG + Sbjct: 781 TYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGKTNGYKEE 840 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA ++ + N+ I K Sbjct: 841 TLQKIWSDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPSEYMAAVLSRSLSNIVDITK 900 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPF 862 F + + IQ++ P VN + F V N+ I + L A+KGVG ++I+E + P+ Sbjct: 901 FMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGEAAVQNIIEERRKNGPY 960 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWV 915 + DF RV+ N++ +ESL AGA D FG R Q L+ + +Y Sbjct: 961 KDIFDFVERVNLTACNKKNIESLALAGAFDNFGIQREQFFAETGKGEIFLETLVRYGNKF 1020 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 + +++ ++F + K + K + R E+ ++G Y S HPLD Y+ IL Sbjct: 1021 QTDKSTATNSLFGGDAFIAIAKPEIPKCERWSDLERLNKEKELVGIYLSAHPLDEYRIIL 1080 Query: 976 RKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 + G E + G ++ +V ++ T+KG+ G + + Sbjct: 1081 TYVCNTGMAEINDKENLVGKDLLFGGIVTDFREGMTKKGNPYGIIKIED 1129 >gi|196229518|ref|ZP_03128383.1| DNA polymerase III, alpha subunit [Chthoniobacter flavus Ellin428] gi|196226750|gb|EDY21255.1| DNA polymerase III, alpha subunit [Chthoniobacter flavus Ellin428] Length = 1219 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 341/841 (40%), Positives = 502/841 (59%), Gaps = 41/841 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS L+GA+ + + K PA+AITD NLF A+EF Q ++G+ P Sbjct: 5 SFVHLHCHTEYSTLDGAVRIKEAMKKAKEYGMPALAITDHGNLFGAIEFYQAGKSSGVNP 64 Query: 70 IIGCQLDIDMQDNLK--MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IIGC++ + +LK T Q ++ F + LL +GY+ L++LVS +L D Sbjct: 65 IIGCEVYVAPDSHLKKTATTQRESAF----HLTLLAQNDQGYRNLVKLVSIAHL-DGMYY 119 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 RI L + G +GLI L+G G I++A ++ A++ ++ + G + ++ L Sbjct: 120 KPRIDKELLAQYG-KGLIGLSGCLKGEINQAIIEDNLPKAKELTGAYRDILGPENFFIEL 178 Query: 187 QRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H + + ++ + LA L LVA N+ FL D+ AHD L+ + + ++ + R Sbjct: 179 HNHGIEAQLKCNKTLPVLAKEFGLGLVAANDVHFLQRTDHAAHDALICIGTGSNIADERR 238 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + Y K+ +EM ++F+++PEA +NT+ IA RC+ + +P P + + Sbjct: 239 MHYVQEVYFKSPAEMRALFAEVPEACDNTLAIAERCNITIDT-SPKYPNYTPPP----GR 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR +AG+ R A ++ ++R + E++V+ + F+ YFLIV DFI Sbjct: 294 TQNEYLREITLAGMHRRYGSDA-----DSEIVQKRFELEISVLEKQGFTNYFLIVWDFIN 348 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK++ IPVGPGRGS AGS+ AYA+ ITDIDP++F LLFERFLNP+R+S PD D+DFC + Sbjct: 349 WAKEHGIPVGPGRGSAAGSMIAYAMGITDIDPIKFKLLFERFLNPERVSPPDIDVDFCVN 408 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV+ KYG V+QIITFG+L AK+ LRDV R Y DR+ K+IPN+ Sbjct: 409 RRGEVIDYVRQKYGERAVSQIITFGTLGAKSVLRDVARVQGWSYGDADRVAKMIPNELG- 467 Query: 486 PVSLQ-----------------AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 ++L+ AI + ++A +P+ +L +++ KLEGL R H Sbjct: 468 -ITLKGLDKKNKETGQMDHIAGAIDKNPELKKAVDTEPATAQLWDVATKLEGLTRGVGVH 526 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VIGDR LS +P+ R + + V+Q+ M + G++K DFLGLKTLT++ ++ Sbjct: 527 AAGVVIGDRDLSDYIPLTRANDNSI-VSQYAMGPLTDVGMLKCDFLGLKTLTVITDAVVL 585 Query: 589 LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + R D+ IP ++ T+ LL T+GIFQLES GM IEDI A+++ Sbjct: 586 IRHREPDFDVDKIPLENQPTFDLLNRGETIGIFQLESGGMVSVCRQFDIKDIEDINAILA 645 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I Y RK GK K+ + H L+ M KET GV++YQEQVMQ AQ+L+GY+L Sbjct: 646 LYRPGPMDLIPDYIKRKKGKAKVKAPHKLLLDMTKETYGVLVYQEQVMQAAQILAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK KE+M K++ +F G + I + A IF+ L KFA YGFN+SH+A Sbjct: 706 GADLLRRAMGKKDKEKMAKERIKFCEGCKNLHNIEEKTANEIFDTLEKFAGYGFNRSHSA 765 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA ISYQTA++K +YPVEF+AA M+ E+ N +KI F + + + I+PP VN + Sbjct: 766 AYAWISYQTAYLKANYPVEFMAAVMSNEVSNTDKISIFVGECERMGMTILPPDVNKSGLK 825 Query: 828 F 828 F Sbjct: 826 F 826 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 83/160 (51%), Gaps = 5/160 (3%) Query: 823 TPCVDFKVGDNRIYYSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881 TP D K+ I Y LAAIK VG A I+E + F SLEDFC RVD KK+N++ Sbjct: 887 TPASDEKIHVGSIRYGLAAIKNVGEAAVAAAIVERNNKGAFQSLEDFCGRVDVKKMNKKA 946 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDK 937 LE LV GA D G R QL +D A ++R ++F K T + K Sbjct: 947 LECLVKCGAFDWTGVERAQLHSEIDGALAAASSANRDRAVGQFSMFDDFEISGKATKTTK 1006 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + K + +S+ + E+ +LGFY +GHPLD Y+ L K Sbjct: 1007 GSAPKVAPWSSTEKLAYEKELLGFYVTGHPLDEYRSALEK 1046 >gi|84495994|ref|ZP_00994848.1| DNA polymerase III subunit alpha [Janibacter sp. HTCC2649] gi|84382762|gb|EAP98643.1| DNA polymerase III subunit alpha [Janibacter sp. HTCC2649] Length = 1204 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 379/1096 (34%), Positives = 587/1096 (53%), Gaps = 92/1096 (8%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 ++ +FVHL VH+ YS+L+GA + ++ ++ PA+A+TD L+ A EF +KA Sbjct: 11 DRKDNFVHLHVHTEYSMLDGAARIGDLFNRAGELGMPALAMTDHGYLYGAHEFWRKAQGT 70 Query: 66 GIQPIIGCQLDID----MQDNLKM------TNQGK--TPFPTVPSIVLLVSTAEGYQRLI 113 G++PIIG + I D ++ T QG + + LL +G + L Sbjct: 71 GVKPIIGLEAYITPGTHRTDKTRVKWGDERTRQGDDVSGSGAYTHMTLLAKNNDGLRNLF 130 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 + S+ L + RI L G +GLI TG S I +A++ Sbjct: 131 RMDSQASLDQVYAKWPRIDRELLDAHG-KGLIATTGCPSSEIQTRLRLGQYDLAKQAASD 189 Query: 174 FKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++ LFG + + + H+ +R +++LA LPL+ATN+S + ED AH L Sbjct: 190 YRDLFGAENYFCEVMDHQNEIERRTIKDLLRLAKELNLPLLATNDSHYTYPEDATAHGAL 249 Query: 232 MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHA 289 + V + + +R + D +YLK+ +EM + + P+A +NT+ +A C + Sbjct: 250 LCVQSGSTLMDPNRFKFDGDGYYLKSAAEMRHTWREFPQACDNTLLVADMCEVSFTEGEG 309 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +PRF +C + EE+ + GL R +G I +AQ ++ D+E+++I+ Sbjct: 310 RYMPRF---DCPP-GESEESWFVKEVQRGLSARF-EGEIPA--YAQ---KQADYEVDIIS 359 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 ++ YFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+ L+FERFLN Sbjct: 360 SKGYASYFLVVADFINWAKENGIRVGPGRGSGAGSMCAYAMRITDLDPIPHGLIFERFLN 419 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+RMSMPDFDIDF + RR EVIRYV KYG +RVAQI+T+G+++AK A++D R + P+ Sbjct: 420 PERMSMPDFDIDFDERRRGEVIRYVTEKYGSDRVAQIVTYGTIKAKQAVKDSARVMGHPF 479 Query: 470 SQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516 + D+L K +P DP HP A+ + FR +P ++E ++ Sbjct: 480 NVGDQLTKAMPADVMGKGVPLSGIYDPEHP----RYAEGNEFRALVETEPHFKEVVETAK 535 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 LEGL R HAAG+++ PL ++P+ + ++ +TQF+ E GL+K DFLGL Sbjct: 536 GLEGLKRQWGVHAAGVIMSSEPLIDVIPIMKRLQDGQILTQFDYPTCETLGLVKMDFLGL 595 Query: 577 KTLTLLQKSLDFL-AQRGVKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALE 633 + LT+L +++ + R +DL + D D TY LL + TLG+FQL+ GMR L+ Sbjct: 596 RNLTILDDAIENVKTNRNEDLDLDALSKDMTDKATYRLLASGDTLGVFQLDGGGMRTLLK 655 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNN---RKNGKEKIVSIHP---------LID-- 679 MQPD EDI A ++LYRPGP+ + + N RKNGK+++ + P +ID Sbjct: 656 LMQPDNFEDISAALALYRPGPM-GVNAHTNFALRKNGKQELTPLDPQLKGKLQQEMIDAL 714 Query: 680 -PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 P+L T G++IYQEQVM+IAQ L+GY+L AD+LRRAMGKK KE +DK+ F +G Sbjct: 715 GPILGTTYGLVIYQEQVMEIAQQLAGYTLGNADLLRRAMGKKKKEVLDKEYVPFSTGMKA 774 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 G ++ ++ +L F+DY FNK+H AAY ++SY TA++K +YP E++A +T D+ Sbjct: 775 KGFNEASIAALWGVLVPFSDYAFNKAHTAAYGLVSYWTAYLKANYPAEYMAGLLTSVGDD 834 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K + + R+ I+++PP VN F I + +AAI+ VG I+ A Sbjct: 835 KDKSALYLGECRRMGIKVLPPDVNDSVARFAAVGTDIRFGMAAIRNVGHNVVEAIIGARE 894 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 +K F S DF S+ + N+R +ESL+ GA D G SR LL+ + +++ Sbjct: 895 EKGAFTSFRDFLSKCPAVVCNKRTIESLIKGGAFDGLGESRAGLLRIHEEYVDAFVSIKR 954 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKF------------SVE-NSSVRFENEQRVLGFYFS 964 +++F G F D+ +VE + S E+ +LG Y S Sbjct: 955 QEAIGQDSLF----GAFGDEGGDGAGGDATMMGLTSVPTVEWDKSTLLTFEREMLGLYVS 1010 Query: 965 GHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 HPL + IL++ + ++AT+ G + +A ++ Q K+T+KG Sbjct: 1011 DHPLFGVEHILQQHA----DTAIATLSAEDGKPEGTMVTVAGLITGLQIKRTKKGDLWAI 1066 Query: 1018 VTFSEPAKEYEANFFP 1033 T + E FFP Sbjct: 1067 ATVEDLEGAVECLFFP 1082 >gi|298346985|ref|YP_003719672.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298237046|gb|ADI68178.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 1226 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 379/1084 (34%), Positives = 581/1084 (53%), Gaps = 82/1084 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VH+ YS+L+GA + ++ K +QQ A+AITD LF A EF Q+ AGI Sbjct: 3 SSDFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRNAGI 62 Query: 68 QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114 +PIIG + + L+ G + + LL T EG L Sbjct: 63 KPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHNLFR 122 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S L Q + R L+ EGLI G SG + Q A + Sbjct: 123 LGSYASLDGQMGKWPRADRELLERY-HEGLIGTAGCPSGEVQTRLRLGQYQEAVRAAGEL 181 Query: 175 KKLFG-DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + +FG D YV L H +R R+ +++LA P++ATN+S ++ +ED E D + Sbjct: 182 QDIFGKDYFYVELMDHGLSIENRVRKD-LLRLAREINAPIIATNDSHYVYKEDREIQDAM 240 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQVH 288 + + +S DR R D+YL+ EM +F+++PEAL+NT+ IA +C+ F Sbjct: 241 LCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDVKE 300 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 +P F +D E + + GL+ R G +++ R+R D+E+ +I Sbjct: 301 GTFMPVFPVPAGED----EVSWFIKEVERGLQYRFPNGI------SEEVRKRADYEVEII 350 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++ LLFERFL Sbjct: 351 VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR +VI YV KYG ++V+Q++T+G++++K AL+D R Sbjct: 411 NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470 Query: 469 YSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515 +S+ ++L K +P +P HP +A FR+ DP ++ +++ Sbjct: 471 FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEA----EEFRKVVAEDPFNRQIFDLA 526 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +EG+ R HA +++ L+ ++PM + + +TQF+ E GL+K DFLG Sbjct: 527 AGVEGMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLG 586 Query: 576 LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 LK LT++ +LD + G DL + DD TY LL+T TLG+FQL+ GMR L+ Sbjct: 587 LKNLTIISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQ 646 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688 ++P +DI ALV+LYRPGP+ ++ Y RKNG +KI IH ++ LK+ T G+ Sbjct: 647 LRPTEFDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHSELEEPLKDILGYTYGL 706 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 IIYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G ++G S+ Sbjct: 707 IIYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCET 766 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++ +L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D +K+ + + Sbjct: 767 LWGILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNE 825 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867 R+ I+++PP VN F N I + LA+I+ VG I++A +K + S D Sbjct: 826 VRRMGIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSD 885 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +V ++ N+R + SL+ AGA D FG R L + + ++ +N ++F Sbjct: 886 FLKKVPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLF 945 Query: 928 A--HEKGTFSDKITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 A +GT S L S++ N + FE E +LG Y S HPL +L Sbjct: 946 AALEMEGTESPDNLLGSASIDIPDISEWPKNELLAFERE--MLGMYVSDHPLSGMNRVLE 1003 Query: 977 KMGIKGYEESVATI-----RGNN--IRLAAMVVSKQQK-KTRKGSRIGWVTFSEPAKEYE 1028 + E+ + + +GN+ +++A +V + K R G + + E Sbjct: 1004 GLA----EDRIVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVE 1059 Query: 1029 ANFF 1032 FF Sbjct: 1060 VLFF 1063 >gi|304389308|ref|ZP_07371273.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327426|gb|EFL94659.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 1225 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 379/1084 (34%), Positives = 581/1084 (53%), Gaps = 82/1084 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VH+ YS+L+GA + ++ K +QQ A+AITD LF A EF Q+ AGI Sbjct: 3 SSEFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRNAGI 62 Query: 68 QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114 +PIIG + + L+ G + + LL T EG L Sbjct: 63 KPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHNLFR 122 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S L Q + R L+ EGLI G SG + Q A + Sbjct: 123 LGSYASLDGQMGKWPRADRELLERY-HEGLIGTAGCPSGEVQTRLRLGQYQEAVRAAGEL 181 Query: 175 KKLFG-DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + +FG D YV L H +R R+ +++LA P++ATN+S ++ +ED E D + Sbjct: 182 QDIFGKDYFYVELMDHGLSIENRVRKD-LLRLAREINAPIIATNDSHYVYKEDREIQDAM 240 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQVH 288 + + +S DR R D+YL+ EM +F+++PEAL+NT+ IA +C+ F Sbjct: 241 LCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDVKE 300 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 +P F +D E + + GL+ R G +++ R+R D+E+ +I Sbjct: 301 GTFMPVFPVPAGED----EVSWFIKEVERGLQYRFPNGI------SEEVRKRADYEVEII 350 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++ LLFERFL Sbjct: 351 VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR +VI YV KYG ++V+Q++T+G++++K AL+D R Sbjct: 411 NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470 Query: 469 YSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515 +S+ ++L K +P +P HP +A FR+ DP ++ +++ Sbjct: 471 FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEA----EEFRKVVAEDPFNRQIFDLA 526 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +EG+ R HA +++ L+ ++PM + + +TQF+ E GL+K DFLG Sbjct: 527 AGVEGMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLG 586 Query: 576 LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 LK LT++ +LD + G DL + DD TY LL+T TLG+FQL+ GMR L+ Sbjct: 587 LKNLTIISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQ 646 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688 ++P +DI ALV+LYRPGP+ ++ Y RKNG +KI IH ++ LK+ T G+ Sbjct: 647 LRPTEFDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHSELEEPLKDILGYTYGL 706 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 IIYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G ++G S+ Sbjct: 707 IIYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCET 766 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++ +L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D +K+ + + Sbjct: 767 LWGILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNE 825 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867 R+ I+++PP VN F N I + LA+I+ VG I++A +K + S D Sbjct: 826 VRRMGIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSD 885 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +V ++ N+R + SL+ AGA D FG R L + + ++ +N ++F Sbjct: 886 FLKKVPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLF 945 Query: 928 A--HEKGTFSDKITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 A +GT S L S++ N + FE E +LG Y S HPL +L Sbjct: 946 AALEMEGTESPDNLLGSASIDIPDISEWPKNELLAFERE--MLGMYVSDHPLSGMNRVLE 1003 Query: 977 KMGIKGYEESVATI-----RGNN--IRLAAMVVSKQQK-KTRKGSRIGWVTFSEPAKEYE 1028 + E+ + + +GN+ +++A +V + K R G + + E Sbjct: 1004 GLA----EDRIVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVE 1059 Query: 1029 ANFF 1032 FF Sbjct: 1060 VLFF 1063 >gi|21702583|gb|AAM75980.1|AF481102_16 DNA polymerase alpha subunit [Candidatus Tremblaya princeps] Length = 1083 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/995 (35%), Positives = 550/995 (55%), Gaps = 55/995 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++HS YS+ +G + + + ++ AD Q ++A+TD NN+F A++F + A +G++PI Sbjct: 18 FVHLRMHSEYSMHDGMVRVEDAVNAARADMQCSLALTDLNNVFGAVKFYKAAVRSGVKPI 77 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC L + + F S++ L + GY+ + +++ + R Sbjct: 78 VGCHLLL------------RGAFGDTSSVLALARSGGGYRNMCRILTAAWSDAATCVEAR 125 Query: 131 ICLSWLQEIGT----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + + WL G+ +G+++L+G GPI R + A + + + + Y+ L Sbjct: 126 VDMRWLA--GSPRILKGIVVLSGALDGPIGRHIIEGNYSAARRSVDDWLTMTQGSFYLEL 183 Query: 187 QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 QR H G + Y + ++L+ +P+VAT+ F++ DY H V +A T+ S+ Sbjct: 184 QRSGHSGTETYVH-RALELSMYSMVPVVATHPIQFIAPSDYPLHCVRCGMAAGTLGSRAT 242 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDI 303 T + + K+R M IF D+P A+ NT IAR C+ + + P F + C+ Sbjct: 243 -GMFTREQHFKSRESMSRIFRDIPSAISNTCAIARMCNLDMDIGRLRRPVFAVCSPCN-- 299 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGYFLIVAD 362 E + L +GL R+ G + + + +Y R+ E ++A M F GYFLIV+D Sbjct: 300 ---EASALACTLGSGLRSRIMDGRMPRFTGTRREYAARIREEYRIVAGMGFCGYFLIVSD 356 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F+ WA+ IPVG GRGSGAGS+ AY L ITDIDP++ LLFERFLNP+R++MPD DIDF Sbjct: 357 FVGWARARGIPVGSGRGSGAGSLMAYVLGITDIDPIQHGLLFERFLNPERVTMPDLDIDF 416 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+ RD V++YV+ +Y + VAQI TFG++ A+A++R+ RA+ + Y+ D + +L+P Sbjct: 417 CQEGRDRVVQYVRRRYSNGSVAQITTFGTMAARASVREAARAMGVSYTLADSIARLVPIR 476 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ + R +R A RLL + + ++EGL R+ + HA GI+I + Sbjct: 477 PGARVTIPNSLKEVRMLRSRYASEGDVRLLIDTASRMEGLVRNMAVHAGGIIISPADIQD 536 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 L P+Y+ S +PV+Q + E GL+KFDFLGL TLT+L + + G V + Sbjct: 537 LCPLYQQAGSIVPVSQLDKDDAESLGLVKFDFLGLTTLTILSCAARCVVGTGRAVSQHSL 596 Query: 602 --PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 P D T+ LL T+ +FQLE GM++AL PD + DIIAL+SLYRPGP+ + Sbjct: 597 CGPPCDSATFGLLQAADTVAVFQLEGIGMQEALRITVPDRLGDIIALISLYRPGPMRLVR 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y RK+G E + + P+L ET GV++YQEQVM+IAQ + GY+ EAD+LRR M + Sbjct: 657 SYCRRKHGVEAAFVVDERLLPILGETYGVMVYQEQVMRIAQAMGGYTPGEADLLRRVMSR 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K +M + F++GAS+ GI + AV +FE + KFA YGFNKSHAAAYA +SYQTAW+ Sbjct: 717 KQPRDMAAHRISFVNGASRLGIGGSSAVAVFEHIKKFASYGFNKSHAAAYATMSYQTAWV 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GD 832 K +PV+F+AA+M+ + + ++++ D + + + P VN P F G Sbjct: 777 KARHPVDFMAANMSGSLRDYDRLRLLRLDCARRGVPLRAPDVNRPSYRFTPISCYGSEGH 836 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L A+K G R I D+PF SL DF +R++S+ + R +E L+ AGA D Sbjct: 837 GYIVYGLGAVKCGGEAVVRDIARCREDRPFRSLYDFLARINSRIVKRSAVECLIKAGAFD 896 Query: 893 CF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 C G +R +L L + ++HE + + T + S+ R Sbjct: 897 CKPGGARATMLAVLPAAMR----------DRHEPTALLWR---IQQPTSAACLIAASAWR 943 Query: 952 F--ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 F ++E LG+YFS HP + R + G + Sbjct: 944 FAVQHESEALGYYFSIHPFSRCRGAARSIAAMGID 978 >gi|315656561|ref|ZP_07909448.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492516|gb|EFU82120.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 1226 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 379/1084 (34%), Positives = 581/1084 (53%), Gaps = 82/1084 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VH+ YS+L+GA + ++ K +QQ A+AITD LF A EF Q+ AGI Sbjct: 3 SSEFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRNAGI 62 Query: 68 QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114 +PIIG + + L+ G + + LL T EG L Sbjct: 63 KPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHNLFR 122 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S L Q + R L+ EGLI G SG + Q A + Sbjct: 123 LGSYASLDGQMGKWPRADRELLERY-HEGLIGTAGCPSGEVQTRLRLGQYQEAVRAAGEL 181 Query: 175 KKLFG-DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + +FG D YV L H +R R+ +++LA P++ATN+S ++ +ED E D + Sbjct: 182 QDIFGKDYFYVELMDHGLSIENRVRKD-LLRLAREINAPVIATNDSHYVYKEDREIQDAM 240 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQVH 288 + + +S DR R D+YL+ EM +F+++PEAL+NT+ IA +C+ F Sbjct: 241 LCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDVKE 300 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 +P F +D E + + GL+ R G +++ R+R D+E+ +I Sbjct: 301 GTFMPVFPVPAGED----EVSWFIKEVERGLQYRFPNGI------SEEVRKRADYEVEII 350 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++ LLFERFL Sbjct: 351 VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR +VI YV KYG ++V+Q++T+G++++K AL+D R Sbjct: 411 NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470 Query: 469 YSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515 +S+ ++L K +P +P HP +A FR+ DP ++ +++ Sbjct: 471 FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEA----EEFRKVVAEDPFNRQIFDLA 526 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +EG+ R HA +++ L+ ++PM + + +TQF+ E GL+K DFLG Sbjct: 527 AGVEGMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLG 586 Query: 576 LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 LK LT++ +LD + G DL + DD TY LL+T TLG+FQL+ GMR L+ Sbjct: 587 LKNLTIISDALDNIKINGNTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQ 646 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688 ++P +DI ALV+LYRPGP+ ++ Y RKNG +KI IH ++ LK+ T G+ Sbjct: 647 LRPTEFDDISALVALYRPGPMGANSHTNYALRKNGLQKIEPIHSELEEPLKDILGYTYGL 706 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 IIYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G ++G S+ Sbjct: 707 IIYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCET 766 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++ +L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D +K+ + + Sbjct: 767 LWGILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLNE 825 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867 R+ I+++PP VN F N I + LA+I+ VG I++A +K + S D Sbjct: 826 VRRMGIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSD 885 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +V ++ N+R + SL+ AGA D FG R L + + ++ +N ++F Sbjct: 886 FLKKVPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLF 945 Query: 928 A--HEKGTFSDKITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 A +GT S L S++ N + FE E +LG Y S HPL +L Sbjct: 946 AALEMEGTESPDNLLGSASIDIPDISEWPKNELLAFERE--MLGMYVSDHPLSGMNRVLE 1003 Query: 977 KMGIKGYEESVATI-----RGNN--IRLAAMVVSKQQK-KTRKGSRIGWVTFSEPAKEYE 1028 + E+ + + +GN+ +++A +V + K R G + + E Sbjct: 1004 GLA----EDRIVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVE 1059 Query: 1029 ANFF 1032 FF Sbjct: 1060 VLFF 1063 >gi|325102919|ref|YP_004272573.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145] gi|324971767|gb|ADY50751.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145] Length = 1454 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 371/1077 (34%), Positives = 563/1077 (52%), Gaps = 89/1077 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQKACA 64 FVHL H+ +S+L+ S+ ++ ++ A+AITD N+ A F K+ Sbjct: 258 FVHLHNHTQFSILQSTTSIAELVKAAVKNKMQAVAITDHANMMGAFHFVNNVLNHNKSAQ 317 Query: 65 AG---------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 A I+PI+GC+ + DN K KT IVLL GY Sbjct: 318 AKNTEAEEKGETPTEQIIKPILGCEFFV--CDNHK----DKTRKDNGYQIVLLAKNKNGY 371 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S Y G V + E E +I+L+G G I AE Sbjct: 372 HNLAKMSSLAYT--DGFYYVPRIDRAIVEKYKEDIIVLSGNLYGEIPNKILNVGEIQAED 429 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228 L+ +K F D Y+ + RH D R +Q +++LA H++ L+ATNN+ +++++D AH Sbjct: 430 ALIWWKNTFKDDFYIEVMRHGQEDENRVNQTLIKLARKHQVKLIATNNTYYINKKDAHAH 489 Query: 229 DVLMAVAHSTVVSQK-DRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 D+L+ V ++ R R ++Y K++ EM +F DLPEA+ N EI + Sbjct: 490 DILLCVKDGEKINTPIGRGRGFRFGMPNQEYYFKSQDEMKKLFQDLPEAIVNIQEIVDKI 549 Query: 282 SFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 +LP+F E E D ++ E L + G + R + Sbjct: 550 EIFKLQRDVLLPKFDIPEEFQVAEDEIDGGKRGENKYLHHLTYEGAKRRYPE-------I 602 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 Q+ R+RLDFEL I R + GYFLIV DFI+ A+ + VGPGRGS AGS AY L IT Sbjct: 603 TQEIRERLDFELATIERTGYPGYFLIVQDFIKAARDMGVSVGPGRGSAAGSAVAYCLGIT 662 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 ++DP+ + LLFERFLNPDR+SMPD DIDF + R +V++YV +KYG +VAQIIT+G++ Sbjct: 663 NLDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGDVMKYVIDKYGANQVAQIITYGTMA 722 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADP--SVD 509 AK+++RD R L +P + D++ KLIPN + L I DD R ++ V Sbjct: 723 AKSSIRDTARVLDLPLFEADKIAKLIPN-----LKLNKIFNMDDQALRSVLRSEELEGVQ 777 Query: 510 RLLEIS-------------QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 +L E++ + LEG R+ HA G++I ++ VP+ SDL VT Sbjct: 778 QLKELASGSDLSAETIQQAKVLEGSVRNTGIHACGVIITPDDITNFVPVSIAKDSDLYVT 837 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615 QF+ +E AGL+K DFLGLKTLTL++ ++ + R G+++D P DD +TY L Sbjct: 838 QFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIELDPDKFPIDDVKTYELFQRG 897 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675 T+GIFQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RKNG+E I Sbjct: 898 ETVGIFQYESPGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEPITYDL 957 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 + LKET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK K+ +DK K +FI Sbjct: 958 DACEEYLKETYGITVYQEQVMLLSQKLANFTKGEADVLRKAMGKKQKDVLDKMKPKFIKQ 1017 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A +NG + + I++ FA Y FNKSH+ YA ++YQTA++K HYP E++AA ++ Sbjct: 1018 AGENGHDEKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSNN 1077 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM 854 M++++++ F ++ ++ ++++ P VN F V D I + + AIKGVG I+ Sbjct: 1078 MNDIKQVTFFMEECKRMGLEVLSPDVNESFYKFTVNDKYAIRFGMGAIKGVGAGAVETII 1137 Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LD 906 E + S+ D R+D + N++ E+L+ AG DCF G R Q ++ Sbjct: 1138 ENRKSGQYKSIFDLAKRIDLRAANKKAFENLILAGGFDCFEGTHRAQYFFDDGDGSILME 1197 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 KY ++N + ++F + TL + + E+ V+G Y SGH Sbjct: 1198 KAIKYGAKYKENENSSQASLFGGGSAVEIPEPTLPACDEWGTMEKLAKEKDVVGIYISGH 1257 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 PLD YK +L K G I ++ +V S + T+ G GW F Sbjct: 1258 PLDDYKFVLEKYCSAGNLNIFNDIDKGLDFQFKVGGIVSSVRHMVTKDGR--GWAFF 1312 >gi|288929494|ref|ZP_06423338.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288328999|gb|EFC67586.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 1249 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 381/1121 (33%), Positives = 590/1121 (52%), Gaps = 105/1121 (9%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------- 58 +K FVHL VH+ YS+L+G S+ ++DK A+ +A+TD N+F EF Sbjct: 13 DKMEDFVHLHVHTYYSILDGQSSIQRLVDKAIANGMGGMALTDHGNMFGTKEFFNYCKKV 72 Query: 59 SQKACAAGI---QPIIGCQLDI-------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108 + K G+ +PIIGC++ + +++N M+ +++L G Sbjct: 73 NGKRKEEGLPEFKPIIGCEMYVARHRKTDKVKENGDMSGY---------HLIVLAKNYTG 123 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 Y+ L +LVSR ++ D R L E EGLI+ + +G + R N + A Sbjct: 124 YKNLTKLVSRAWV-DGYYMRPRTDREDL-ETYHEGLIVCSACIAGEVPRKILRNDIEGAR 181 Query: 169 KRLLTFKKLFGDRLYVNLQRHRGYDRY------------RESQV-VQLAYTHELPLVATN 215 + + ++FGD Y+ LQRH D + R ++V +++A + +V TN Sbjct: 182 EAAQWYHRVFGDDYYLELQRHEVKDPHIRANREAFPLQQRANKVMLEMAEEMGIKVVCTN 241 Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275 ++ F+ +E+ EAHD L+ ++ + R + + K R EM +F DLP+A+ NTV Sbjct: 242 DAHFVDQENAEAHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNEVFGDLPQAMRNTV 301 Query: 276 EIARRCSFILQVHAPILP----------------RFIEKECDDIQKEEEN---------- 309 EI + H+PI+P R EKE D +EN Sbjct: 302 EILNKVETYSIDHSPIMPFFPIPEDFGTEEQWRQRISEKELYDEFTSDENGQNQLPPEEG 361 Query: 310 ELRNKAVAGLE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354 E + K + G E +LA K Y ++ R+R++FEL+++ M F Sbjct: 362 EEKIKKLGGYEKLYRIKFEADYLAKLAYDGAKKLYGEPLTEEVRERVNFELHIMKTMGFP 421 Query: 355 GYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIV DFI A+ ++ VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+ Sbjct: 422 GYFLIVQDFINTAQNELDVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRI 481 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 S+PD D DF D R V+ +V++KYGH++VA IIT+G++ K +++DVGR ++P V+ Sbjct: 482 SLPDIDTDFDDDGRGRVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVGRVEKVPLKIVN 541 Query: 474 RLCKLIPNDPAHPVSL---QAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHA 529 LCKLIP+ + + AI REA AD + + ++ LEG R HA Sbjct: 542 DLCKLIPDKLPDGLKMSVANAIKAIPELREAEASADEGLRNTMMYAKMLEGTVRGTGIHA 601 Query: 530 AGIVIGDRPLSQLVPMYR-----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 G +I +S VP+ D L TQ++ IE+ GLIK DFLGLKTL++L++ Sbjct: 602 CGTIICRDAISDWVPVSTAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKE 661 Query: 585 SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +++ + G ++L IP DD TY L T+G FQ ES+GM++ L +QP ED+ Sbjct: 662 AVENVRLSTGKTINLEEIPIDDPLTYKLYCEGRTIGTFQFESAGMQKYLRELQPTVFEDL 721 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 IA+ +LYRPGP+D I + RK ++ P ++ LK+T G+ +YQEQVM +++ L+ Sbjct: 722 IAMNALYRPGPMDYIPEFIARKRDPSRVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLA 781 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 ++ ++D LR+AMGKK+ +MDK + F G KNG K + I+E KFA Y FNK Sbjct: 782 NFTRGQSDTLRKAMGKKLIAQMDKLETLFYEGGMKNGHPKEVLNKIWEDWKKFASYAFNK 841 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SHA Y+ +++QTA+ K HYP E++AA M+ + N+ +I KF + R I+ + P VN Sbjct: 842 SHATCYSWVAFQTAYFKAHYPAEYMAAVMSRNLANISEITKFMDECRVMGIKTLGPDVNE 901 Query: 824 PCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRV 881 + F V + I + LAAIKG+G A+ I+ E + P+ S+ D RV+ +N++ Sbjct: 902 SRLKFSVNKHGEIRFGLAAIKGMGDAAAQAIIQEREKNGPYTSVFDMVQRVNLSSVNKKA 961 Query: 882 LESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 +ESL +G D G +R L + +DN+ +Y Q + + ++F Sbjct: 962 IESLALSGGFDSLGIARENYLGTDSKGATFIDNLTRYGQLFQMEQQQMQNSLFGASNAVE 1021 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVATIR 991 + + +S R E+ ++G Y S HPLD YK +L+ M G E+ +A ++ Sbjct: 1022 VSTPPVPQAERWSSIERLNKERDLVGIYLSAHPLDDYKIVLQSMCNTGCNELEDRMALVQ 1081 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + LA MV + + T+ G G+VT + + E FF Sbjct: 1082 KAEVTLAGMVTNTRSAVTKTGKPCGFVTIEDYSGSGELAFF 1122 >gi|212638343|ref|YP_002314863.1| DNA polymerase III subunit alpha [Anoxybacillus flavithermus WK1] gi|212559823|gb|ACJ32878.1| DNA polymerase III, alpha subunit [Anoxybacillus flavithermus WK1] Length = 1077 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 369/1036 (35%), Positives = 577/1036 (55%), Gaps = 89/1036 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF+HLQV S YSLL + + ++ + Q PAIA+TD N L+ + F + A GI+P Sbjct: 6 SFIHLQVRSGYSLLSSTVKIEELVTRARELQFPAIALTDENVLYGVMPFYEACQAHGIKP 65 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG I M G +VLL +GY++L+ + + + D GK Sbjct: 66 IIGMMATI-------MDEHGHPD-----QLVLLAKNNDGYRQLVHIATAIQTND-GKGIS 112 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ 187 + S T LI +T G G +++ + AE + T+ KLF GD Y+N+Q Sbjct: 113 LLDFSH----HTSELIGMTSGVYGRVEQHLLNGEIEQAEAIVQTYAKLFQRGD-FYINVQ 167 Query: 188 RHRGYDRYRESQVVQLAYTH----ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 RH + ++ L + H ++PLVATN+ ++ +ED A + L+A+ H + Sbjct: 168 RH---GLQEQEHLLSLLFEHSKRWDIPLVATNDVRYIYKEDTLAFECLLAMKHGKKMVDP 224 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +RPR+ T +++LK+ EM ++FS+ EA+E TV IA+RC + +PR+ Sbjct: 225 NRPRLATNEYHLKSAHEMAALFSNGYEAVEETVRIAQRCHVTFESKRWFMPRYPVPSG-- 282 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 K + L+ R A Y RL +EL +I +M FS YFLIVAD Sbjct: 283 --KTADEYLQTWCWEQFTKRFPDRPKA-------YVARLQYELQIIQQMNFSDYFLIVAD 333 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F+++A++ I GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP R+S+PD DIDF Sbjct: 334 FVRFARERGILTGPGRGSAAGSIVAYILGITQVDPLQYGLLFERFLNPARLSLPDIDIDF 393 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 DRR+EVIRY++ KYG + VAQI+TFG+ ++A+R+VGR + Sbjct: 394 PDDRREEVIRYIEQKYGTDHVAQIVTFGTFGMRSAIREVGRVFDV--------------- 438 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLE---ISQKLEGLYRHASTHAAGIVIGDRPL 539 D R + LA S DR ++Q++EGL +H S HAAGIVI RPL Sbjct: 439 ------------DEREIQQTLATGSFDRTRPWHYVAQRIEGLPKHTSVHAAGIVISPRPL 486 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 + ++P+ + ++ VTQ+ M +E+ GL+KFD L LK LT++++ + + QR G ++ Sbjct: 487 TDIIPL-QSGQTTTYVTQYAMDALERLGLLKFDLLALKNLTMIEQMIQSIEQRTGHRLSF 545 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD +TY LL+ T G+FQLES GM++ L +QP EDI+A+ +L+RPGP++ I Sbjct: 546 ENMPIDDQKTYALLSRGDTFGVFQLESEGMKRILRELQPTTFEDIVAVNALFRPGPMEQI 605 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y RK+G+E I +H + +L+ T GVI+YQEQ+M+IA+ ++ +SL++AD+LRRA+ Sbjct: 606 PTYIARKHGREPIRYMHDDLQSILQSTYGVIVYQEQIMKIAEQMAKFSLAQADLLRRAIS 665 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK +M+K+K+ FI G +NG +A ++EL+ +FA YGFN+SHA AY+ I+Y A+ Sbjct: 666 KKDVGQMEKEKKHFIEGCIQNGYDAHLANELYELIVRFAGYGFNRSHAVAYSYIAYMLAY 725 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYP++F AA +T EK+ + + R I+++PPS+ F V DN I + Sbjct: 726 IKAHYPLDFYAAVLTNVSGQKEKMMQCVHELRSKKIRLLPPSIARSEGHFTVDDNGIRFG 785 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L AIK V + ++ +PF DF SR+ + ++V+E+L+F+G D F R Sbjct: 786 LLAIKQVNAAFVKQMVRERQKRPFSDFFDFVSRLRMESSQKKVIEALIFSGCFDEFHIER 845 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L S+D ++A+ + N H + + + E S+ + + + E++ Sbjct: 846 ATLYASIDVAIEHAELM---------NFSLHVQPKY---VHAEPLSLID---QLKYEKQW 890 Query: 959 LGFYFSGHPLDVYKPILRKMGIKG-YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 L Y S HP++ + G K YE + + N+ ++ V +K+T+KG + + Sbjct: 891 LNVYVSPHPVESFSHFYSMWGAKRMYEWTKENV--NHGKVIVYVEEVTRKRTKKGEEMAF 948 Query: 1018 VTFSEPAKEYEANFFP 1033 VT + + E++A FP Sbjct: 949 VTICDDSDEWQAVVFP 964 >gi|325849029|ref|ZP_08170521.1| DNA polymerase III, alpha subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480274|gb|EGC83337.1| DNA polymerase III, alpha subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 1149 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 361/1063 (33%), Positives = 580/1063 (54%), Gaps = 65/1063 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + +F HL +H+ YSLL+G ++ +++K+ + + AITD N++ +EF +K GI Sbjct: 2 TNNFTHLHLHTEYSLLDGFTKIDKLMEKLKEYKMNSCAITDHGNMYGVIEFYKKCQDNGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC++ + D+ Q K + ++LL GYQ LI++VS+ Y + Sbjct: 62 KPIIGCEVYVSDNDHKIKNPQNKRYY----HLILLAKNNRGYQNLIKIVSKAYT-EGFYY 116 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 RI L+E + +I L+ +G I++ N + A + + LFG + Y+ + Sbjct: 117 KPRIDFEVLEEY-KDDIIALSACLNGEINQRILENDIEKAYQTAQKYLDLFGRENFYLEI 175 Query: 187 QRHRGYDRYRESQVVQ--LAYTHE---LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Q H +E ++V L HE + +V TN+ ++ + D DVL + +++ Sbjct: 176 QNHG----LKEQKIVNQNLLKIHEDLKIEMVCTNDVHYVEKNDAFYQDVLSCIQTGSLLE 231 Query: 242 QKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + R ++ D YLK++ M IF D P A EN+ +IA C+ L+ H P LP F Sbjct: 232 DEKRMKMPCDEFYLKDQQMMKEIFKDFPRAYENSQKIADMCNVKLEFHNPHLPYF----- 286 Query: 301 DDIQKEEENELRNKAVAGLEV--RLAQGAIAKGYHAQDYR--QRLDFELNVIARMKFSGY 356 K EN + L+ L +AK Y D + +R + E++VI M + Y Sbjct: 287 ---TKVPEN------MTNLDYLKYLVNKGLAKKYGKVDEKIQKRAEKEISVINNMGYVDY 337 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DF+++AK N I VGPGRGS AGS+ +YAL IT IDP++++LLFERFLNP+R+SMP Sbjct: 338 FLIVWDFVRYAKDNKIAVGPGRGSAAGSIISYALDITQIDPIKYNLLFERFLNPERVSMP 397 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D DIDFC + RD V+ YV + YG + V+QI+TFG ++A+ A+RDVGR + + + +VD++ Sbjct: 398 DIDIDFCYENRDRVVDYVYDLYGKDHVSQIVTFGRMKARNAIRDVGRVMDISFKKVDKIA 457 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP + +A+ + + D R+++ ++ +E L RH S HAAG+VI Sbjct: 458 KLIPQAIGMTID-KALENTEKLAYEYENDVETKRMIDTARNIENLPRHTSIHAAGVVISK 516 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVK 595 L+ +VP+ + +D VTQFNM IE+ GL+K DFLGL+ LT++Q ++ D + + Sbjct: 517 EILTDIVPLA--LSNDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDVKKYKNID 574 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 ++L I +D + T+GIFQ ES+GMR L+ ++P +D++A SL+RPGP+ Sbjct: 575 INLDNIDENDPKVLDQFRKAETIGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPGPM 634 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I Y K + I I + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD LRR Sbjct: 635 DQIPNYIKNKMYPQNISYIDQSLKPILEVTYGIIVYQEQVMQIVQQLAGFSLGEADNLRR 694 Query: 716 AMGKKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNK 763 AM KK M+ +E F+ G NGIS+ A I++ + FA Y FNK Sbjct: 695 AMSKKKMSVMEANREIFVHGKKDEKGNYEVLGCVNNGISEQNANKIYDEMISFAKYAFNK 754 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAY++++ QTA++K ++ E++A +T M + K+ + +A++ I+I+PP +N Sbjct: 755 SHSAAYSLVAIQTAYLKCYFKEEYMANLLTSIMGDSSKVYLYISEAKRLGIEIVPPDINK 814 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRR 880 F N+I + ++AIK VG I++ +K + + +DF R++S LN++ Sbjct: 815 SERRFIAEKNKIIFGMSAIKNVGDNLIDLIVKIRDEKIYKTFKDFLERIESNDPTALNKK 874 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKI 938 LESL+ +GA D GY R +L+ + + EK N+ F + D I Sbjct: 875 ALESLIKSGAFDSLGYKRSELIAVHETALQSIHDNEKVNLKGQMNLLDFDQKDQNEEDDI 934 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------- 991 + + + E+ VLGFY S HPL+ ++K E ++ +R Sbjct: 935 KFPPVNEYKNKQKLSLEKEVLGFYISDHPLNSLGDRVKKY-TNFSTEILSELRPIDLDKY 993 Query: 992 -GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +A ++ +K + T+K + + + T + E FP Sbjct: 994 DNKEVVMAGVITNKSETMTKKNTLMAFSTLEDMYGSIEMIIFP 1036 >gi|238917602|ref|YP_002931119.1| DNA polymerase III subunit alpha [Eubacterium eligens ATCC 27750] gi|238872962|gb|ACR72672.1| DNA polymerase III subunit alpha [Eubacterium eligens ATCC 27750] Length = 1188 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 361/1081 (33%), Positives = 583/1081 (53%), Gaps = 69/1081 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + I + ++AITD ++ +EF + A AGI+P Sbjct: 2 SFTHLHVHTEYSLLDGSSKIKEITKRAKELGMDSLAITDHGVMYGVIEFYEAAKKAGIKP 61 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 ++GC++ + K Q + + +VLL GYQ L+++VS+ + + Sbjct: 62 VLGCEVYVAPGSRFDKGAGQSEDKYN---HLVLLAENNTGYQNLMKIVSKGFT-EGFYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 R+ L+E EG+I + +G + R + A L + +FG ++ LQ Sbjct: 118 PRVDKEVLREY-HEGIIATSACLAGEVQRYLSRGMYETARDAALELQDIFGKGNFFLELQ 176 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H Y Q++++ + LV TN+ + +D +AHD+L+ + +S ++R Sbjct: 177 DHGIAEQHYVNPQLMRMHNETGIELVCTNDVHYTYADDVDAHDILLCIQTGKKLSDENRM 236 Query: 247 RVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC----- 300 R YLK+ EM +F PEA+ENT +IA RC+ ++ LP F E Sbjct: 237 RYEGGQFYLKSEEEMAELFKYAPEAVENTHKIAERCNVEIEFGVTKLPAFDVPEAYGKNS 296 Query: 301 ---------DDIQKEEEN--------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 + ++K + ++ +A A + I + + D QRL + Sbjct: 297 WVYLNALCYEGLKKRYPDKTADICIEDIIEQAKASIVADRKDVVIKRAEDSNDIFQRLSY 356 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL+VI M + YFLIV D+I +AK ++IPVGPGRGS AGS+ +Y L IT +DP++++L+ Sbjct: 357 ELSVIYSMGYVDYFLIVWDYINYAKTHDIPVGPGRGSAAGSLVSYCLGITTLDPVKYNLV 416 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD D+DF + R +VI YV KYG E V QIITFG++ A+A ++DVGR Sbjct: 417 FERFLNPERVSMPDIDVDFAPEGRQKVIDYVIEKYGKECVCQIITFGTMAARAVIKDVGR 476 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPV--SLQAIAD-----DSRFREARLADPSVDRLLEISQ 516 + +PY+ VD + K+IP + ++ AD ++ F+ AD +V L++ ++ Sbjct: 477 VMDLPYAMVDNIAKMIPQKVGVTIDSAMNGDADRDIKPNAEFKALYEADETVRDLIDKAK 536 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +LEGL RHAS HA+G++I + + + VP+ ++ VTQF +E GL+KFDFLGL Sbjct: 537 RLEGLPRHASVHASGVLISQKDVGEYVPVAVGA-DNVKVTQFEGPTLEHLGLLKFDFLGL 595 Query: 577 KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 + LT++Q++ Q + IP++D + ++ GIFQLES GM+ ++ ++ Sbjct: 596 RNLTVIQQTEKCEQQIDPAFSVDNIPYNDKAVFECISQGKCAGIFQLESGGMKNFMKELK 655 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 PDC+ED+IA +SLYRPGP+D I Y K I P ++P+L+ T G ++YQEQVM Sbjct: 656 PDCLEDLIAGISLYRPGPMDFIPQYIKGKENAGNITYECPQLEPILEPTYGCMVYQEQVM 715 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF--------ISGASKNGISKTIAVN 748 QI + L+GYS +D +RRAM KK + M+++++ F + G KNGIS+ A Sbjct: 716 QIVRDLAGYSWGGSDNVRRAMAKKKLDVMEQERQNFVYGNEANGVPGCIKNGISEQTANK 775 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 I++ + FA Y FNKSHAA YAV++YQTA++K H+PV+++A ++ D K+ ++ Sbjct: 776 IYDEMMDFAKYAFNKSHAACYAVVAYQTAYLKVHFPVQYMAWLISSVTDKTSKVAEYILA 835 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867 AR+ I I+P VN DF V I + A+K +G T I+E + + F S++D Sbjct: 836 AREMGISILPVDVNKSVADFGVEGKNIRFGFNAVKSMGRPTITAIIEERTNNGDFHSMQD 895 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +R+ + +N+R +E L+ AGA D FG +R ++ + + A K+ + ++F Sbjct: 896 FITRM-AGVINKRTVEHLILAGAFDTFGNTRRGMMNVYERMIDSAVKQNKDAISGQMSLF 954 Query: 928 AHEKGTFSDKITLE-------KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--- 977 + + DK +LE +F E+ E E+ VLG Y +GHPLD Y + K Sbjct: 955 --DFASEEDKQSLEMRVPDIQEFEKED---LLEREKEVLGVYVTGHPLDEYTGMWEKHIS 1009 Query: 978 -----MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + G+ + ++ + + T G ++ ++T + E F Sbjct: 1010 ARSTDFLIDEETGQAKLMNGSKQTIGGLISNIKVITTGSGQQMAYLTIEDFVGSVEVIMF 1069 Query: 1033 P 1033 P Sbjct: 1070 P 1070 >gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39] gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39] Length = 1477 Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust. Identities = 369/1100 (33%), Positives = 584/1100 (53%), Gaps = 97/1100 (8%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---- 58 Q LE++ F HL H+ +S+L+ +++ ++ AA + PA+A+TD N+ A F Sbjct: 254 QELERA-VFAHLHNHTQFSVLQSTINIPALIKATAAAKMPAVAMTDRANMMGAFHFVAQV 312 Query: 59 ----------SQKACAAG-------IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIV 100 +Q A G I+PI+GC+ + + ++ K + G +V Sbjct: 313 INHNKGVDARNQAAIEKGEVPEEVPIKPIVGCEFFVCENHEDKKRKDDGY-------QVV 365 Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160 L GY L ++ S Y +G V + E + +I+L+G G I Sbjct: 366 FLAKNKAGYHNLAKMSSIAYT--KGFYYVPRIDKAVVEQYKDDIIVLSGNLYGEISSKLL 423 Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLF 219 + AE+ LL +K FG+ YV L RH D ++ LA HE+ L+ATNNS + Sbjct: 424 NLGEKQAEEALLWWKSQFGEDFYVELMRHSQEDEDIVNVSLMALAKKHEVKLIATNNSYY 483 Query: 220 LSEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALE 272 ++++D AHD+L+ V +T + + R ++Y K+ EM ++F+D+PEA+ Sbjct: 484 INKKDANAHDILLCVKDGEKQATPIGRGRGFRYGLPNQEYYFKSPEEMKNLFADVPEAIL 543 Query: 273 NTVEIARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVRLA 324 N E+ + +LP+F E E D ++ E LR+ G + R Sbjct: 544 NIKEVIDKIESYKLAREVLLPKFDIPEEFLVAEDEEDGGKRGENKFLRHLTYVGAKKRY- 602 Query: 325 QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 G D +RLDFEL I + + GYFLIV DFI A+ ++ VGPGRGS AGS Sbjct: 603 ------GEITDDIAERLDFELQTIEKTGYPGYFLIVQDFIAEARNLDVSVGPGRGSAAGS 656 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV KYG +VA Sbjct: 657 AVAYCLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIKKYGANQVA 716 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV------SLQAIADDSRF 498 QIIT+G++ AK++++D R L +P + +++ KLIPN + +L+ + Sbjct: 717 QIITYGTMAAKSSVKDTARVLDLPLFEAEKIAKLIPNMKLAKIFNLDEKTLKGALRPDEY 776 Query: 499 R---EARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 E ++ + D + LE +Q LEG R+ HA G++I ++ VP+ SD Sbjct: 777 EKVVELKMLATNNDLGAKTLEQAQILEGSLRNTGIHACGVIITPSDITNFVPVSTAKDSD 836 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611 L VTQF+ +E AGL+K DFLGLKTLTL++ ++ + R + +D P DD +TY L Sbjct: 837 LYVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKFRHNIDLDPDNFPIDDAKTYEL 896 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 T+GIFQ ES+GM++ ++ ++P D+IA+ +LYRPGP++ I + RKNG+E+I Sbjct: 897 FQRGETIGIFQYESTGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEI 956 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 + LKET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK K+ +DK K + Sbjct: 957 KYDLDACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPK 1016 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 FI+ A++ G +I I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA Sbjct: 1017 FIAQAAEKGHQASILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAV 1076 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTA 850 ++ M +++++ F ++ +Q + ++ P VN + F V ++ + L+ IKGVG Sbjct: 1077 LSNNMSDIKQVAFFMEECKQMGVSVLGPDVNESDIKFSVNISGQVRFGLSGIKGVGDKAV 1136 Query: 851 RH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL-------- 901 I+E + + S+ DF R +++ +N++ ES V++GA DCF Y R Q Sbjct: 1137 ESIIIERNESGLYKSVYDFAKRSNTRTVNKKAYESFVYSGAFDCFSYHRAQYFFVGINDK 1196 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLG 960 + ++ + K+A + N + ++F + E S + R + E+ +G Sbjct: 1197 MNGIEKMIKFANDFQNNEASSQSSLFGAAAADMMISEPSLPVAPEWSLIDRLKYEKDAIG 1256 Query: 961 FYFSGHPLDVYK--------------PILRKMGIKGYEESV----ATIRGNNIRLAAMVV 1002 + SGHPLD YK ++ K+ E V TI+ + + +VV Sbjct: 1257 IFLSGHPLDNYKLELKEFCQHKVKHLSLVNKIRTGDSNEEVLAEFETIKNRELVVGGLVV 1316 Query: 1003 SKQQKKTRKGSRIGWVTFSE 1022 Q+ T+ G G +TF + Sbjct: 1317 LATQRITKTGKPFGIITFED 1336 >gi|324998887|ref|ZP_08119999.1| DNA polymerase III subunit alpha [Pseudonocardia sp. P1] Length = 1185 Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust. Identities = 382/1076 (35%), Positives = 574/1076 (53%), Gaps = 73/1076 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ +S+L+GA L+++ + + A+A+TD N++ A EF +KA AAG++P Sbjct: 8 SFVHLHTHTEFSMLDGAARLDDLFSEAVKNDMSAVAMTDHGNVYGAFEFWRKAKAAGVKP 67 Query: 70 IIGCQLDIDMQDN-------LKMTNQG---KTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + + L +N G K P + LL EG L L S + Sbjct: 68 IIGMEGYLAPGSRHERKRVALGGSNPGAADKNPDLMYTHMTLLAENTEGMHNLFRL-SSL 126 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 L+ R+ L++ GT GLI TG SG + R + + A + ++ +FG Sbjct: 127 ASLEGYYYKPRMDRELLEQYGT-GLIGTTGCPSGEVARLLQQDDFEGACQAASDYRDIFG 185 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D + L H ++ + + L +LP +ATN+ + +D +AH+VL+ V Sbjct: 186 KDNFFCELMDHGIEIEKRVQEDLFALKKRLDLPGLATNDLHYTYPDDTKAHEVLLCVQTG 245 Query: 238 TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRF 295 ++ +R + D YLK+ +EM ++ + PEA +NT+ +A RC + P+ Sbjct: 246 KTLADPNRFKFDAQDFYLKSATEMRELWDPIHPEACDNTLWVAERCDIDFTTGQDLQPKA 305 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 E + EE+ L + GL R G + YR + ++E+ VI +M + G Sbjct: 306 PVPEGE----TEESWLIKEVERGLHDRFPNGI------TEQYRTQANYEVGVIIKMGYPG 355 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+ AD I+ AK I GPGRGS AGS+ AY L ITD+DP+R L+FERFLNPDR+SM Sbjct: 356 YFLVTADLIRHAKSVGIRCGPGRGSAAGSLVAYVLGITDLDPIRHKLIFERFLNPDRVSM 415 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVD 473 PD D+DF + RR E+IRYV KYG +R+AQIIT+ +++AKAA++D R L Q YS D Sbjct: 416 PDIDMDFDERRRGEMIRYVTEKYGEDRIAQIITYSTIKAKAAIKDSARVLFGQPGYSVAD 475 Query: 474 RLCKLIPNDPA---HPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEGLY 522 R+ K +P PA + L I D S R+ EA ADP V +++ ++ LEGL Sbjct: 476 RISKAMP--PAVMGKDIPLSGIFDPSHKRYSEATEVRALYEADPQVKEIVDTARGLEGLK 533 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ PL ++P+ R +TQF+M E GL+K DFLGL+ LT+L Sbjct: 534 RQWGVHAAGVIMSSTPLIDVIPIQRRESDGAVITQFDMGVCETIGLLKMDFLGLRNLTIL 593 Query: 583 QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +L+ + G +VDL + DD TY LL+ TLG+FQL+ MR L M P E Sbjct: 594 DDALENITLNGKPEVDLDHVELDDGPTYELLSRGDTLGVFQLDGGPMRDLLRRMAPSEFE 653 Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695 I A+ +LYRPGP+ Y +RKNG+++I IHP L +P+ L ET G+I+YQEQV Sbjct: 654 HISAVGALYRPGPMGANAHNDYADRKNGRQEITPIHPELAEPLKDVLGETFGLIVYQEQV 713 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ+L+GYSL +AD+LRRAMGKK KE +DK+ F G NG S ++++L Sbjct: 714 MSIAQVLAGYSLGQADLLRRAMGKKKKEILDKEYVGFAQGMKDNGYSADAVKTLWDILLP 773 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 F+DY FN++H+AAY V+SY TA++K +YP E++A +T D+ +K + + R+ + Sbjct: 774 FSDYAFNRAHSAAYGVVSYWTAYLKANYPAEYMAGVLTSVRDDKDKAAVYLAECRRMGVT 833 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874 ++PP VN +F N I + L I+ VG I+ A +K F DF +VD+ Sbjct: 834 VLPPDVNDSVRNFAPVGNDIRFGLGGIRNVGHNVVDAIVAARREKGNFVDFSDFLRKVDA 893 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT- 933 N++V+ESL+ AGA D G+SR LL + +K + ++F G+ Sbjct: 894 VVCNKKVVESLIKAGAFDSLGHSRKGLLLVHADAIDAVMSTKKAASLGQFDLFGSMDGSG 953 Query: 934 ----------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 F K+ E++ +S + E+ +LG Y SGHPL + L Sbjct: 954 GDDGDELGGIFDVKVPEEEW---DSKHKLAVEREMLGLYVSGHPLQGLEQALAAKA---- 1006 Query: 984 EESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + S+A I G + + ++ + ++ + G + A E FFP Sbjct: 1007 DTSIADIVEGSVAEGGQVTVGGILANVNRRVNKNGEPWASAQIEDLAGGIEVLFFP 1062 >gi|325845299|ref|ZP_08168602.1| DNA polymerase III subunit alpha [Turicibacter sp. HGF1] gi|325488660|gb|EGC91066.1| DNA polymerase III subunit alpha [Turicibacter sp. HGF1] Length = 1010 Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust. Identities = 345/1022 (33%), Positives = 587/1022 (57%), Gaps = 72/1022 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQV S+YSLL ++ + ++D +Q +A+ + + SA++F ++P Sbjct: 2 SFVHLQVRSAYSLLSSSIKIKELVDLALENQMSCLALVEEGTMHSAIKFYNACRRVNVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG +++ QG + + V+L GYQRL+++ S + +G Sbjct: 62 LIGMSVNV----------QGDS---FIDEWVILARNQCGYQRLLKIASFI-AKQEGVVLY 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD---RLYVNL 186 L ++Q+ L+++T G G + + E+RLL + + + LY+ L Sbjct: 108 EQVLPFVQD-----LVVITSGEHGMLCSGI----EEYKEERLLQYYESYLKSIPHLYIGL 158 Query: 187 QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 R R Y+ + ++ A P+VA N+ +L +ED + +L A+ + V ++ Sbjct: 159 MRVNQRTYELSK--HLISFASNVNRPIVALNDVRYLKKEDAKTLTLLQAIKQNQSV--EE 214 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P V + Y K+ +M +F+D+P AL T +IA C + +H +LP++ E Sbjct: 215 LPLVDYERYFKSECQMKELFADVPNALMQTEQIANDCEVEIPLHQSLLPKYQTPEG---- 270 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++ L GLE R Y +Y RL +EL+VI +M FS YFLIV DF+ Sbjct: 271 VSSDSYLEALCFKGLEKR---------YGHLEYANRLKYELSVIHKMGFSDYFLIVWDFV 321 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AK ++I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF Sbjct: 322 RYAKSHDIYVGPGRGSAAGSLVAYVLGITNVDPIKYELLFERFLNPERITMPDIDIDFQD 381 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RRDEVI+YVQNKYG V QI TFG+ Q+++A RD+ R Q+ + ++++ I + Sbjct: 382 NRRDEVIQYVQNKYGSHCVVQIATFGTFQSRSAWRDLARVHQVETTLINKVASFIYSGS- 440 Query: 485 HPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +L+ I + ++ R+ P ++ + + ++K+EGL RH S HAAG++I D L+ Sbjct: 441 ---TLKEIYEQTKGLRDFFSTYPKLEAIYKEAEKIEGLPRHTSIHAAGVIISDHDLTDYT 497 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602 + + + + V+Q+ + +E GL+K DFLGLK L +LQ+ + + + D++ IP Sbjct: 498 AI-MEGPTGIYVSQYEAEDLEMIGLLKMDFLGLKNLNMLQQITTLIKSSVAPEFDINKIP 556 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD +TY +++ T G+FQLES GMRQ L ++P+C+EDIIA +L+RPGP++ I ++ Sbjct: 557 YDDLKTYEMISQGQTTGVFQLESEGMRQVLRAVRPNCLEDIIACNALFRPGPMEGIPLFA 616 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+ ++ I HP + +L +T G+I+YQEQ+MQIA ++SGYSL EADVLRRA+ KK K Sbjct: 617 ARKHHEQPIEYYHPSLQYILSKTYGIIVYQEQIMQIANVVSGYSLGEADVLRRAVSKKKK 676 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E ++++++ F+ A + G + IA ++EL+ KFA+YGFN+SHA AY++I+YQ A++K H Sbjct: 677 EILEREQKTFVEKAIERGYHQEIATQLYELILKFANYGFNRSHAVAYSMIAYQMAYLKRH 736 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP F+ +++ + + ++ ++A+Q +I ++PPS+N+ + +++ + I +SL I Sbjct: 737 YPSYFMTVALSNVIGSESNTAQYVKEAKQLDILVLPPSINSSGLMYQIENENIRFSLLPI 796 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 K +G AR I+ + S DF SR S LN+R E L+ GA+D FGY+R L Sbjct: 797 KHIGMNLARQIVAERERGLYKSFYDFVSRTRS-FLNQRAYEGLIDVGAMDEFGYNRTTLH 855 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLG 960 +L I ++++ + G F +I + K ++ +S+ + + E+ +LG Sbjct: 856 HNLTAILDFSKY---------------DGGLFETDFEIMMMKETL-SSAEKMKREKELLG 899 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY + HP+ + + ++ G + + + + I V ++ + +KG + ++ Sbjct: 900 FYLNSHPIHLMRDQAKEKGWY-FPSDLIHLNVSTITCVGFVEKFREIRDKKGKLMAFMDI 958 Query: 1021 SE 1022 S+ Sbjct: 959 SD 960 >gi|315655526|ref|ZP_07908425.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii ATCC 51333] gi|315490181|gb|EFU79807.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii ATCC 51333] Length = 1225 Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust. Identities = 376/1066 (35%), Positives = 578/1066 (54%), Gaps = 83/1066 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VH+ YS+L+GA + ++ K +QQ A+AITD LF A EF Q+ AGI Sbjct: 3 SSEFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRNAGI 62 Query: 68 QPIIGCQLDID-----------MQDNLKMTNQGK--TPFPTVPSIVLLVSTAEGYQRLIE 114 +PIIG + + L+ G + + LL T EG L Sbjct: 63 KPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSYTTEGMHNLFR 122 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S L Q + R L+ EGLI G SG + Q A + Sbjct: 123 LGSYASLDGQMGKWPRADRELLERY-HEGLIGTAGCPSGEVQTRLRLGQYQEAVRAAGEL 181 Query: 175 KKLFG-DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + +FG D YV L H +R R+ +++LA P++ATN+S ++ +ED E D + Sbjct: 182 QDIFGKDYFYVELMDHGLSIENRVRKD-LLRLAREINAPVIATNDSHYVYKEDREIQDAM 240 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS--FILQVH 288 + + +S DR R D+YL+ EM +F+++PEAL+NT+ IA +C+ F Sbjct: 241 LCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDVKE 300 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 +P F +D E + + GL+ R G +++ R+R D+E+ +I Sbjct: 301 GTFMPVFPVPAGED----EVSWFIKEVERGLQYRFPNGI------SEEVRKRADYEVEII 350 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++ LLFERFL Sbjct: 351 VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR +VI YV KYG ++V+Q++T+G++++K AL+D R Sbjct: 411 NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470 Query: 469 YSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515 +S+ ++L K +P +P HP +A FR+ DP ++ +++ Sbjct: 471 FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEA----EEFRKVVAEDPFNRQIFDLA 526 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +EG+ R HA +++ L+ ++PM + + +TQF+ E GL+K DFLG Sbjct: 527 AGVEGMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLG 586 Query: 576 LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 LK LT++ +LD + G DL + DD TY LL+T TLG+FQL+ GMR L+ Sbjct: 587 LKNLTIISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQ 646 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIH-----PLIDPMLKETQG 687 ++P +DI ALV+LYRPGP+ ++ Y RKNG +KI IH PL D +L T G Sbjct: 647 LRPTEFDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHRELEEPLKD-ILGYTYG 705 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +IIYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G ++G S+ Sbjct: 706 LIIYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEECCE 765 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++ +L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + D +K+ + Sbjct: 766 TLWGILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQTDK-DKLGMYLN 824 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866 + R+ I+++PP VN F N I + LA+I+ VG I++A +K + S Sbjct: 825 EVRRMGIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFS 884 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF +V ++ N+R + SL+ AGA D FG R L + + ++ +N ++ Sbjct: 885 DFLKKVPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDL 944 Query: 927 FA--HEKGTFSDKITLEKFSVE---------NSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 FA +GT S L S++ N + FE E +LG Y S HPL +L Sbjct: 945 FAALEMEGTESPDNLLGSPSIDIPDISEWPKNELLAFERE--MLGMYVSDHPLSGMNRVL 1002 Query: 976 RKMGIKGYEESVATI-----RGNN--IRLAAMVVSKQQKKTRKGSR 1014 + E+ + + +GN+ +++A +V + K +++ + Sbjct: 1003 EGLA----EDRIVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQ 1044 >gi|332044617|gb|EGI80811.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4] Length = 1453 Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust. Identities = 369/1067 (34%), Positives = 564/1067 (52%), Gaps = 74/1067 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58 FVHL HS +S+L+ +S+ +I+ A PA+A+TD N+ A F Sbjct: 261 FVHLHNHSQFSVLQSTMSVADIVAVAAEHNMPAVALTDHANMMGAFHFVNAVNKHNKAVE 320 Query: 59 SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 + A I+PI+GC+ + +++L + + IVL+ GY L +L S Sbjct: 321 GKTTDAKKIKPIVGCEFFV-CENHLDKSRKDNGY-----QIVLIAKNKNGYHNLAKLSSH 374 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 + G V L E E LI LTG G + AE+ L+ +K+ F Sbjct: 375 AFT--DGFYYVPRIDKKLIEQYKEDLICLTGNLYGEVPSKVLNVGENQAEEALIWWKETF 432 Query: 179 GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-- 235 D LYV L RH D R ++ LA H++ LVATNN+ + +ED AHD+L+ V Sbjct: 433 QDDLYVELMRHNQEDENRVNPTLISLAKKHDVKLVATNNTYYAKQEDANAHDILLCVKDG 492 Query: 236 --HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 +T + + R ++Y K+ M +IF D+P+A+ N E+ + Sbjct: 493 EKQATPIGRGRGYRYGLPNQEYYFKSAEAMKNIFKDVPDAIINIQEVVDKIEGFQLARDV 552 Query: 291 ILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 +LP F +++ +D K EN LR+ G + R + +++ +RLD Sbjct: 553 LLPAFDIPEEFQHKEDLEDGGKRGENAFLRHLTYEGAKKRYGEEL------SEEVVERLD 606 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 FEL+VI + + GYFLIV DFI+ A+ ++ VGPGRGS AGSV AY L IT+IDP++++L Sbjct: 607 FELSVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVAYCLWITNIDPMKYNL 666 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNPDR+SMPD DIDF + R V+ YV KYG +VAQIIT+G++ AK+++RD Sbjct: 667 LFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIEKYGSNQVAQIITYGTMAAKSSIRDTA 726 Query: 463 RALQMPYSQVDRLCKLIP--NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ---- 516 R L +P DR+ KLIP + L S+FR L ++ LL IS+ Sbjct: 727 RVLDLPLFDADRIAKLIPTMSKLGKIFGLSEKELGSKFRAEDLE--KINELLNISEGEDL 784 Query: 517 ---------KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 LEG R+ HA G++I +++ VP+ SDL VTQF+ +E AG Sbjct: 785 QAETVNIARSLEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSDLYVTQFDNSVVEDAG 844 Query: 568 LIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGLKTLTL++ ++ + A+ G+ +D P DD ETY L T+G+FQ ES Sbjct: 845 LLKMDFLGLKTLTLIKDTVKIVKAKHGITLDPENFPLDDEETYALFQRGETVGVFQYESP 904 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 GM++ L+ ++P +D+IA+ +LYRPGP++ I + RK+G E I P ++ LKET Sbjct: 905 GMQKHLKDLKPTVFDDLIAMNALYRPGPMEYIPSFVRRKHGDEDIEYDLPAMEEYLKETY 964 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK +DK K +FI AS G Sbjct: 965 GITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASAKGHDAKKL 1024 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ M++++++ F Sbjct: 1025 EKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIKQVTFFM 1084 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864 ++ ++ + ++ P VN F V DN + + + AIKGVG I++ D P+ S Sbjct: 1085 EECKRMKLPVLGPDVNESYYKFSVNKDNAVRFGMGAIKGVGHGAVMTIVDNRKKDGPYKS 1144 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQS-------LDNIQKYAQWVE 916 + D R+D + N++ E+L AG DCF + R Q L+ KY + Sbjct: 1145 IFDIAKRIDLRAANKKAFENLALAGGFDCFTDTHRAQYFHKEGSDLTFLEKAIKYGAKHQ 1204 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 +N + ++F + + + + E+ V+G Y SGHPLD ++ ++ Sbjct: 1205 ENENSAQVSLFGGGSDVQIAEPEVPPCETWGTMEKLAQEREVVGVYISGHPLDDFRTEMK 1264 Query: 977 KM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 G Y + +I +V Q + +++G GW F+ Sbjct: 1265 NFCTGTIAYFNDLHEHVNKDITFGGVVTDVQHRVSKQGK--GWALFT 1309 >gi|23099632|ref|NP_693098.1| DNA polymerase III alpha subunit [Oceanobacillus iheyensis HTE831] gi|22777862|dbj|BAC14133.1| DNA polymerase III (alpha subunit) [Oceanobacillus iheyensis HTE831] Length = 1106 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 369/1036 (35%), Positives = 561/1036 (54%), Gaps = 66/1036 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL + S YSL+E +++ ++DK ++Q A+A+TD L+ A+ F + GI+P Sbjct: 2 SFTHLYIKSGYSLMESTITIPKLIDKAKQERQEALALTDIGVLYGAISFYKACIDNGIKP 61 Query: 70 IIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + + D Q N TVP VLL GYQ LI L + + + G + Sbjct: 62 IIGLTVMVKDEQLN-----------ETVPC-VLLAKNNNGYQNLISLSTNINI--NGNEE 107 Query: 129 VRICL--SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVN 185 V L ++ +I G++ +T G +++ F ++ ++ LF D Y+ Sbjct: 108 VEKSLLDNYTDDIV--GILPVTTG----MEKVF----TEELGTYFSSWSNLFSDDDFYIG 157 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 + RH +V+Q + +PL + +L E D+ A+D L A+ + + Sbjct: 158 VDRH-------SLEVIQSLQSLSIPLTSIQEVRYLHENDHIAYDCLQAIRYGEKWDGTEI 210 Query: 246 PRVTPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + EM +F + PEAL NT I +C+ + ++ +P F Sbjct: 211 NSKNKQLHFTTEKEMEDLFQYIAPEALANTERIKDKCNLEINMNERYIPSFPVPNS---- 266 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++ L+ ++ +E R + RL++EL VI M +S YFLIVADFI Sbjct: 267 LTADSYLQQLCISKIEERYKE-------RNDQIMNRLNYELEVIQSMNYSDYFLIVADFI 319 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 Q+AK N I VGPGRGS AGS+ AY L IT++DPL ++LLFERFLNP+R+SMPD D+DF Sbjct: 320 QYAKDNQIAVGPGRGSSAGSIVAYLLGITEVDPLEYNLLFERFLNPERLSMPDIDVDFSD 379 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RRDEVI YV+ KYG + VAQIITFG+ A++ LR++ + L + ++ + K IP Sbjct: 380 VRRDEVIDYVREKYGQDHVAQIITFGTFAARSVLRELMKTLDVHEMDMNYVMKEIPTQSN 439 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 SL I + +A + S +LL I+ KLEG+ R+ STHAAG+VI ++ L+ V Sbjct: 440 R--SLTDILKEKEELKAYVKQSSRLKLLFSIAVKLEGIPRNVSTHAAGVVISEKKLTNHV 497 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIP 602 P+ +TQ+ M +E GL+K DFLGL+ L+L++K + R + L+ IP Sbjct: 498 PLTIGTNQTY-LTQYAMGELETIGLLKMDFLGLRNLSLIEKVNTAITNSRHRSLQLAEIP 556 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 D T+ LL T G+FQLES GM++ L+ + P EDI+A+ +LYRPGP+D I Y Sbjct: 557 EQDEATFQLLRKGHTNGVFQLESDGMKKVLQELMPSTFEDIVAVNALYRPGPMDFIPTYI 616 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK E + HP + P+L +T GV+IYQEQ+MQIA +++G++L EAD+LRRA+ KK + Sbjct: 617 RRKKNVEPVSYPHPDLKPILSKTYGVLIYQEQIMQIANVIAGFTLGEADILRRAVSKKKE 676 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +M KQK+ FI G G K +A IF + +FA+YGF +SHA AY+ ISYQ A+MK H Sbjct: 677 SDMYKQKQAFIDGCINRGYKKEVADEIFSWIVRFANYGFPRSHAVAYSKISYQLAYMKAH 736 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP F A ++ + EKI + Q+ ++ N I+PP +N + V I L+AI Sbjct: 737 YPNAFYAELISGVRNQQEKINTYIQEFKKLNGNILPPDINKSYGKYAVERKDIRMGLSAI 796 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KG+G + I++A D F + DFC RV+ K ++R ++E+LV G D +R LL Sbjct: 797 KGIGIQPIQEILQARKDGTFKNFFDFCMRVNLKIVSRTIIENLVLVGVFDSIYRNRASLL 856 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV----RFENEQRV 958 S+D Q +E+ K F + F D+I + + E + +E+ + Sbjct: 857 ASID------QAIEQKELFKE---FLDQPSLFQDQIEMVESYTEIEDFTKIKKLSDEKEL 907 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK-KTRKGSRIGW 1017 LGFY S HPL Y+ LR G + + + A ++V + +T++G R+ + Sbjct: 908 LGFYVSSHPLKEYRKKLRSAGNITLSHAKKLVNTRKVIHAVVIVDAMKVIRTKRGDRMAF 967 Query: 1018 VTFSEPAKEYEANFFP 1033 +T S+ E +A FP Sbjct: 968 LTISDEELEIDAVLFP 983 >gi|311063925|ref|YP_003970650.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010] gi|310866244|gb|ADP35613.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium bifidum PRL2010] Length = 1192 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 369/1077 (34%), Positives = 580/1077 (53%), Gaps = 69/1077 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + +++ ++ PA+ ITD N+ A E + A +G++P Sbjct: 7 NFVQLHNHTHYSLLDGASKVPDLVKRVKELGMPAVGITDHGNMHGAYELWRAAVDSGVKP 66 Query: 70 IIGCQL----DIDMQDNLKMT-NQGKTPFPT-------------VPSIVLLVSTAEGYQR 111 IIG + + QD +++ + TP P + + + EG Sbjct: 67 IIGIEAYVTPETARQDKTRVSWDTNWTPVPGHARNPDDVSGGGLITHLTMWAENDEGLVN 126 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 LI+ S L + + R+ L ++G+I +G SG I A + Sbjct: 127 LIKASSVANLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAA 185 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 F+ +FG D Y+ L H + ++ +A PL+ATN+S ++ E D +A D Sbjct: 186 GEFQDIFGKDNFYIELMDHGLSIESKVTGDLLTIAKKLGAPLLATNDSHYVMEADKDAQD 245 Query: 230 VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 ++ + + +R + +Y+K+ EM +F D P+A +NT+EIA RC+ I H Sbjct: 246 AMLCINSGATLDDPNRFKFEGSGYYIKSAEEMRELFKDHPDACDNTLEIAERCNVIFDDH 305 Query: 289 --APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 +P+F +C + E L+ K GLE R G + ++ D+E Sbjct: 306 EDGAFMPQF---DCPEGWDETSLFLK-KVEEGLEKRY------DGNPPMEVLKQADYECG 355 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI +M+F GYFL+VAD+I WAK++ + VGPGRGS AG++ AYA+ IT++DPL+ L+FER Sbjct: 356 VICQMQFCGYFLVVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPLKHGLIFER 415 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+S+PD D+DF + R V+ YV +KYGH++VAQ + +G+++ K AL+D R + Sbjct: 416 FLNPERVSLPDIDVDFDPEGRMRVLGYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMG 475 Query: 467 MPYSQVDRLCKLIPNDPA----HPVSLQAIADDS--RFREARL------ADPSVDRLLEI 514 P+ R+ + +P PA +S+ I D S R+ EAR +DP V R+ E Sbjct: 476 FPFEMGTRITEALP--PAATGGKDISVHDIFDPSAKRYAEAREYRELYDSDPEVKRITEE 533 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDF 573 ++ +EGL R HA ++G P++ P+ R+D V T F E GL+K DF Sbjct: 534 AKGIEGLIRQTGVHACATIMGSAPITDTSPLLE--RTDGTVTTTFEYHTCETLGLVKMDF 591 Query: 574 LGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL LT+++ +L + G V D + IP DD ETY LL+ TLG+FQL+S GMR L Sbjct: 592 LGLSNLTVIRDTLTNIEHNGKGVIDYTKIPLDDRETYQLLSRGDTLGVFQLDSDGMRSLL 651 Query: 633 EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQ 686 + ++PD DI AL++LYRPGP +D+ Y RKNG +KI IHP +D LK ET Sbjct: 652 KTLKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELDEPLKQVLDETY 711 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+IIYQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ A Sbjct: 712 GLIIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAA 771 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 I+E+L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N K + Sbjct: 772 EAIWEILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKNKTALYL 831 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM--EASADKPFDS 864 +AR+ IQ++ P VN ++ + + + L AI+ VG + I+ + + + Sbjct: 832 GEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGENAVKDIIAERETGRGKYVN 891 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 DF RV LNRR++ESL+ AGA D +R L ++ +++ + Sbjct: 892 FMDFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHESAIDSVVGLKRKQAEGQF 951 Query: 925 NIFAHEKGTFSDKITLEKFSVE-----NSSVRFENEQRVLGFYFSGHPLDVYKPIL---R 976 ++F+ + + +D + +V + + + E+ +LG Y S HPL + +L R Sbjct: 952 DLFSDTEDSSADAMGDATVAVPDIEEWDKKDKLKFERDMLGLYVSDHPLSGMQAVLAGMR 1011 Query: 977 KMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +M I + T+ G + LA ++ + ++ ++KG+ VT + + FF Sbjct: 1012 EMSIAHLIDRAPTMPSGQQVTLAGLITNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1068 >gi|160947425|ref|ZP_02094592.1| hypothetical protein PEPMIC_01359 [Parvimonas micra ATCC 33270] gi|158446559|gb|EDP23554.1| hypothetical protein PEPMIC_01359 [Parvimonas micra ATCC 33270] Length = 1122 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 342/987 (34%), Positives = 556/987 (56%), Gaps = 56/987 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL + +++K A+AITD NN++ ++F ++ I+PI Sbjct: 5 FVHLNVHTEYSLLNNYNPIEKLIEKAKELNFKAMAITDYNNMYGVIDFYKRCKKNSIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+L + +N +I+LL GY+ L +LVS +Y+++ + Sbjct: 65 IGCELTLSYSNN------------EFYNIILLAKNNLGYKNLCKLVSNLYVVENRNREF- 111 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I L++ ++ LI++ G I + + A+ +L FK LF + L++ L H Sbjct: 112 ITFDELEKY-SKNLILIVGSKRSFIRKCLYSEDILSAKNEILNFKSLFNREDLFLELNFH 170 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D ++ ++ A + V TN+ +L D+ + ++ ++S+ Sbjct: 171 FEENDELMMNRYLEFANEVNIETVVTNDVHYLENTDFNLFKIARCISKGVLLSELKEDNF 230 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T +++LK+ EM+ IFS L +++ NT IA+RC+ LP + + D + Sbjct: 231 TQAEYFLKSEEEMLKIFSTLEDSMYNTKMIAQRCNVEFDFSTYHLPEY---KVPDGVSTK 287 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ L + + G++ R + ++R+++E +VI +M F+ YFLIV DF+ +A Sbjct: 288 EDYLHSLIIEGMKKRYEN-------LTDEIKKRVNYEFSVINKMGFTDYFLIVWDFVNFA 340 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 KKN IPVGPGRGSGA S+ AY L ITDIDP+ + L+FERFLNP+R+SMPDFDIDFC +RR Sbjct: 341 KKNKIPVGPGRGSGANSIVAYCLEITDIDPIEYDLIFERFLNPERVSMPDFDIDFCNERR 400 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV KYG V+QIITFG+++ +AA+RD+GR L S VD++ KLIPN+ Sbjct: 401 EEVIDYVIKKYGKNHVSQIITFGTMKPRAAVRDIGRVLGYKLSTVDKVAKLIPNNLDVTF 460 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 A+ D ++ D ++ +L+ IS+K E +RH S HAAGIVI L++ +P+ + Sbjct: 461 K-NALRDSLELKKLYDEDINIKKLINISEKFEKFHRHISIHAAGIVITKEELTEYIPLAK 519 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDH 606 + VTQFNM +E+ GL+K DFLGL+TLT++ ++ + + + +D+ I +D Sbjct: 520 SGEN--IVTQFNMVELEELGLLKMDFLGLRTLTVIDDTIKLVKKNYNRDIDIEKISLNDK 577 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +L T T+GIFQ ES+GMR L+ ++ D ++++A SL+RPGP++ I Y K Sbjct: 578 NVLNLFKTADTIGIFQFESTGMRLFLKDLKADNFDELVAANSLFRPGPMNQIPNYIKNKR 637 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I + ++ LK T G+I+YQEQVMQIA+ L+GY+ +AD LR+A+GKK + M+ Sbjct: 638 NPSGIRYLDKRLEKYLKSTYGIIVYQEQVMQIARELAGYTWGQADNLRKAIGKKHMDIME 697 Query: 727 KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++ F I G +NG+ + +A NIF+L+ +F +Y FNKSH+A Y++ +Y Sbjct: 698 YNRKIFIYGLDNLDGSIKIKGCIRNGVDEKLAQNIFDLIVEFGNYAFNKSHSACYSLNAY 757 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +TA++K +YP+E++ + ++ + + Q+ ++ I+I+ PSVN + Sbjct: 758 RTAYLKYYYPLEYMVCLLNSVINYERQFFLYFQEIKRMGIKILLPSVNFSFYKISTENKC 817 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALDC 893 + + IKG A+ I+EA F + ++F R+ DSK +N +E+L+ +GA D Sbjct: 818 MRVGFSQIKGFNRLLAKDIIEARKAGKFKNFKEFLERLKDSKNMNLISIENLIKSGAFDE 877 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-- 951 +R+++L S + + + Q V K++ N + + S EKF VE + Sbjct: 878 IEKNRIEILNSCETL--FTQIVSKSK-----NELSGQLSLISSDFMQEKF-VEYKNFSKD 929 Query: 952 --FENEQRVLGFYFSGHPLDVYKPILR 976 E E+ VLGFY S HPLD YK ++ Sbjct: 930 DTLEFEKDVLGFYISAHPLDSYKEYIK 956 >gi|319935864|ref|ZP_08010290.1| hypothetical protein HMPREF9488_01121 [Coprobacillus sp. 29_1] gi|319809131|gb|EFW05612.1| hypothetical protein HMPREF9488_01121 [Coprobacillus sp. 29_1] Length = 1018 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 343/972 (35%), Positives = 548/972 (56%), Gaps = 63/972 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HLQV S+YS + + +++ A A+A+TD NN+F ALEFSQ+ GI+PI Sbjct: 2 FGHLQVLSAYSFQNSTILIKDLIQDANAKHIEALALTDKNNMFGALEFSQECLKYGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G + + ++ + PF +LL GY L+++ + L + Sbjct: 62 FGMEASVMIEGEI-------YPF------ILLAKDDIGYFDLVKVCCDINLHEDK----- 103 Query: 131 ICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 C+ +G + +++G + G ++R + A K L +FK +F D YV +Q H Sbjct: 104 -CIDLKSLALYKGHMYIISGSAQGIVERLVAKEMEEEAVKYLKSFKDIFQDNYYVMIQNH 162 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + +++ LA + ++ +N ++L + D A D++ A + K P + Sbjct: 163 HIKLQQALNERIISLAKYCRVKILCSNEVIYLKKADALAVDLMQAANQGLTLESKYVP-I 221 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK EM +F E L T E+ + C + + LP F E Sbjct: 222 TEEKYLKTEDEMKMLFD--AEILAETREVVQNCKATIPLQDKHLPSFPVPH----HGEAS 275 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L+ GL+ R I Y +RL +EL +I +M F YFLIV D++++AK Sbjct: 276 EYLKGLCQMGLKKRFQNQKIP-----SQYVKRLQYELKIIHQMGFDDYFLIVWDYVRFAK 330 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N I VG GRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF DRRD Sbjct: 331 VNKIQVGAGRGSAAGSLVAYVLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFQDDRRD 390 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EV+ YV KYG + VAQI+TF + + A++D+G+ + +P ++++ + K+IP P + + Sbjct: 391 EVVHYVVEKYGQDHVAQIVTFNTYGPRVAIKDMGKVMGIPLARLEIIAKMIPTGPKNKKT 450 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + S +F+ DP + +++ + +E L R+ STHAAG+++ +PL +++P+ Sbjct: 451 ITTMYKTSAQFQSMINQDPLLKKIIGATSVIEHLPRNISTHAAGVILSKQPLREVIPLVL 510 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLI 601 + L ++Q++ +IE+ GL+K DFLGLK LT++ D++ + +K D L+ + Sbjct: 511 GPTATL-MSQYSKDYIEEVGLLKMDFLGLKNLTMI----DYIC-KDIKRDINETVFLNQL 564 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D +TY L+ T G+FQLES GMR L M+P C +DI+A ++L+RPGP++NI +Y Sbjct: 565 PLNDQKTYELIARADTFGVFQLESQGMRNLLRKMKPYCFDDIVAAIALFRPGPMENIPLY 624 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R+ +EK+V P ++P+LK T GV+IYQEQ+MQ+AQ ++G+SL +AD+LR+A+ KK Sbjct: 625 LKRRGLQEKVVYPLPELEPILKSTYGVMIYQEQIMQVAQKMAGFSLGKADILRKAVSKKE 684 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 M KE FI+G G + A+ IFEL+ KFA+YGF K+H+ AY ++YQ A++K Sbjct: 685 TGLMQSMKEEFIAGCIDKGYREEKAIEIFELIEKFANYGFGKAHSVAYGYVAYQLAYLKA 744 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFC-QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP+ F A+ ++ E+ + E K C Q+ + +++ I+PPSVN F V + I YSL Sbjct: 745 NYPLYFFASILSNELSS-ETTKLHCIQECKTYHVDILPPSVNYSHARFMVENGHIRYSLL 803 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIK VG + I+E + F+ + DF R+D KL+++++ESL+ AGALD F SR Sbjct: 804 AIKNVGYAGYKAIVEERKNGLFEDVYDFMMRMDESKLSKKMIESLIDAGALDEFQLSRNT 863 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + ++LD I+ Y KN E F D+ + E+ VLG Sbjct: 864 MKKNLDTIRDYGNL--KNMLGIDEKPVLTIYKDFQDE-------------KLRKEKEVLG 908 Query: 961 FYFSGHPLDVYK 972 Y + HP+++ K Sbjct: 909 IYLTMHPIELMK 920 >gi|260890684|ref|ZP_05901947.1| DNA polymerase III alpha subunit [Leptotrichia hofstadii F0254] gi|260859562|gb|EEX74062.1| DNA polymerase III alpha subunit [Leptotrichia hofstadii F0254] Length = 1185 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 362/1022 (35%), Positives = 578/1022 (56%), Gaps = 77/1022 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ YSLLEG ++ ++K A+AITDT+ +F A+EF +K AGI+PI Sbjct: 5 FVHLKLHTEYSLLEGVGKIDEYVEKAKKIGVKALAITDTS-MFGAIEFFKKCKNAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ +D + + F S+ LL GY+ L +L S Y ++ + Sbjct: 64 IGLEVFLDGLEKV-------GEF----SLTLLAKNQNGYKNLSKLSSISYSRFTRNRN-K 111 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ ++ L +L+GG + + + + + + K FGD ++ + Sbjct: 112 IKYDELKKY-SDDLYILSGGINSEVVKGILDLENTQVRRVIEKLGKDFGDNFFIEVPAVE 170 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR--- 247 ++ R+ + V TN+ + + +D ++ ++ + + + Sbjct: 171 RLEKARKMLFDIVRKNKFDNFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTEKSENSEI 230 Query: 248 VTPDHYLKNRSEMVSIF-----SDLPEALENTVE-IARRCSFILQVHAPILPRF------ 295 + D YLK+ +E+ F S+ E N VE I C+ + H P++ Sbjct: 231 LYDDLYLKSENEIEKSFENKEYSEFYETGINNVEKIVENCNVDFEFHHFKFPKYSLPQNV 290 Query: 296 ------------------IEKECDDIQKEE--------ENELRNKAVAGL---EVRLAQG 326 ++K D +K + E E+ +AG EV++ + Sbjct: 291 SEKEFLRNLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIEKEIAKDEIAGQKLKEVKIREE 350 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 + ++ ++ +R ++EL +I +M ++GYF+IV DFI+++++N + VGPGRGS AGS+ Sbjct: 351 LLK--HNLENVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPGRGSAAGSIV 408 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 +YAL IT+IDPL ++L+FERFLNP+R+SMPD DIDF Q++R+ VI YV NKYG E VA I Sbjct: 409 SYALNITEIDPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNKYGAEYVAHI 468 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506 ITFG+L+A+ A+RDVGR L + +VD++ K+IP + +L I + + E D Sbjct: 469 ITFGTLKARLAIRDVGRVLNVSLVKVDKIAKMIPFNTELKDALNNIPEIRKMYE---TDR 525 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 + R+++ S KLEG RHAS HAAG+VI LS +P Y D ++ + TQ+ MK +E+ Sbjct: 526 EIRRVIDYSLKLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQYQMKELEEL 585 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 G++K DFLGLK LT+L+K+++ + + R +K+DL+ I +D +TY LLT T+G+FQ ES Sbjct: 586 GILKMDFLGLKNLTILRKTVENIEKRRKIKIDLNDISLNDEKTYELLTKADTMGVFQCES 645 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683 +G+R ++ M+ + EDIIAL++LYRPGP+ + +V + N KN K +I I + +L+ Sbjct: 646 AGIRSLMKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNKTEIKYIDNSLKYILE 705 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+I+YQEQVM+I ++ YSL EAD LRRA+GKK E M K +E+F++ A KNG+ Sbjct: 706 ETYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVTNAEKNGVLS 765 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 A I++L+ KF YGFNKSH+AAYA+I Y TA+ K +YP+EF AA MT E+ N+++ Sbjct: 766 KKANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKVNYPLEFFAAIMTTEVHNLDRFV 825 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----------IYYSLAAIKGVGTTTARHI 853 F +AR+ I I P VN DF++ +N+ I + L AIKGVG I Sbjct: 826 VFVNEAREKGINIFLPDVNLSDYDFEIEENQADNENFGKVGIRFGLFAIKGVGAALINEI 885 Query: 854 MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 + + F S +DF R+ + ++ LESL+ +GALD +R + +S+D + +Y+Q Sbjct: 886 KKERKNGKFVSYKDFGYRMKQNGITKKQLESLILSGALDGLDGNRFEKYKSIDKVLEYSQ 945 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 ++ + +F +K D +EK V +NE+ LG Y S HPL+ K Sbjct: 946 KKYESEEDFQLILFGGKKEISVD-FQMEKSEEFPQKVLLQNEKEYLGIYVSSHPLNEKKN 1004 Query: 974 IL 975 ++ Sbjct: 1005 LI 1006 >gi|224282597|ref|ZP_03645919.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB 41171] gi|310287058|ref|YP_003938316.1| DNA polymerase III, alpha subunit [Bifidobacterium bifidum S17] gi|313139756|ref|ZP_07801949.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB 41171] gi|309250994|gb|ADO52742.1| DNA polymerase III, alpha subunit [Bifidobacterium bifidum S17] gi|313132266|gb|EFR49883.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB 41171] Length = 1189 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 369/1077 (34%), Positives = 580/1077 (53%), Gaps = 69/1077 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + +++ ++ PA+ ITD N+ A E + A +G++P Sbjct: 4 NFVQLHNHTHYSLLDGASKVPDLVKRVKELGMPAVGITDHGNMHGAYELWRAAVDSGVKP 63 Query: 70 IIGCQL----DIDMQDNLKMT-NQGKTPFPT-------------VPSIVLLVSTAEGYQR 111 IIG + + QD +++ + TP P + + + EG Sbjct: 64 IIGIEAYVTPETARQDKTRVSWDTNWTPVPGHARNPDDVSGGGLITHLTMWAENDEGLVN 123 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 LI+ S L + + R+ L ++G+I +G SG I A + Sbjct: 124 LIKASSVANLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAA 182 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 F+ +FG D Y+ L H + ++ +A PL+ATN+S ++ E D +A D Sbjct: 183 GEFQDIFGKDNFYIELMDHGLSIESKVTGDLLTIAKKLGAPLLATNDSHYVMEADKDAQD 242 Query: 230 VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 ++ + + +R + +Y+K+ EM +F D P+A +NT+EIA RC+ I H Sbjct: 243 AMLCINSGATLDDPNRFKFEGSGYYIKSAEEMRELFKDHPDACDNTLEIAERCNVIFDDH 302 Query: 289 --APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 +P+F +C + E L+ K GLE R G + ++ D+E Sbjct: 303 EDGAFMPQF---DCPEGWDETSLFLK-KVEEGLEKRY------DGNPPMEVLKQADYECG 352 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI +M+F GYFL+VAD+I WAK++ + VGPGRGS AG++ AYA+ IT++DPL+ L+FER Sbjct: 353 VICQMQFCGYFLVVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPLKHGLIFER 412 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+S+PD D+DF + R V+ YV +KYGH++VAQ + +G+++ K AL+D R + Sbjct: 413 FLNPERVSLPDIDVDFDPEGRMRVLGYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMG 472 Query: 467 MPYSQVDRLCKLIPNDPA----HPVSLQAIADDS--RFREARL------ADPSVDRLLEI 514 P+ R+ + +P PA +S+ I D S R+ EAR +DP V R+ E Sbjct: 473 FPFEMGTRITEALP--PAATGGKDISVHDIFDPSAKRYAEAREYRELYDSDPEVKRITEE 530 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDF 573 ++ +EGL R HA ++G P++ P+ R+D V T F E GL+K DF Sbjct: 531 AKGIEGLIRQTGVHACATIMGSAPITDTSPLLE--RTDGTVTTTFEYHTCETLGLVKMDF 588 Query: 574 LGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL LT+++ +L + G V D + IP DD ETY LL+ TLG+FQL+S GMR L Sbjct: 589 LGLSNLTVIRDTLTNIEHNGKGVIDYTKIPLDDRETYQLLSRGDTLGVFQLDSDGMRSLL 648 Query: 633 EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQ 686 + ++PD DI AL++LYRPGP +D+ Y RKNG +KI IHP +D LK ET Sbjct: 649 KTLKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELDEPLKQVLDETY 708 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+IIYQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ A Sbjct: 709 GLIIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAA 768 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 I+E+L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N K + Sbjct: 769 EAIWEILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKNKTALYL 828 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM--EASADKPFDS 864 +AR+ IQ++ P VN ++ + + + L AI+ VG + I+ + + + Sbjct: 829 GEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGENAVKDIIAERETGRGKYVN 888 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 DF RV LNRR++ESL+ AGA D +R L ++ +++ + Sbjct: 889 FMDFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHESAIDSVVGLKRKQAEGQF 948 Query: 925 NIFAHEKGTFSDKITLEKFSVE-----NSSVRFENEQRVLGFYFSGHPLDVYKPIL---R 976 ++F+ + + +D + +V + + + E+ +LG Y S HPL + +L R Sbjct: 949 DLFSDTEDSGADAMGDATVAVPDIEEWDKKDKLKFERDMLGLYVSDHPLSGMQAVLAGMR 1008 Query: 977 KMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +M I + T+ G + LA ++ + ++ ++KG+ VT + + FF Sbjct: 1009 EMSIAHLIDRAPTMPSGQQVTLAGLITNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065 >gi|126663019|ref|ZP_01734017.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38] gi|126624677|gb|EAZ95367.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38] Length = 1512 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 362/1084 (33%), Positives = 569/1084 (52%), Gaps = 91/1084 (8%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------- 58 K ++ HL H+ +S+L+ +++N+++ A + PA+A+TDT N+ A F Sbjct: 257 KDAAYAHLHNHTQFSVLQSTIAINDLVKASAKFKMPAVAMTDTGNMMGAFHFVSAVMNHN 316 Query: 59 -------------SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105 ++ I+PI+GC+ +I K +VLL Sbjct: 317 KAAKAKIEAAIEAGEEPTEIEIKPIVGCEFNICDDHKDKTKKDNGN------QVVLLAKN 370 Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165 +GY L ++ S Y D RI + + E +++L+G G I Sbjct: 371 KKGYHNLAKMSSIAYT-DGFYYVPRIDRKIVAQY-KEDIMVLSGNLYGEIPSKILNVGES 428 Query: 166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEED 224 AE+ L+ +K+ FG Y+ L RH+ D R +Q ++ A H + L+ATNN+ ++++ED Sbjct: 429 QAEEALIWWKEQFGSDFYLELMRHKQEDENRVNQTLIAFAKKHNVKLIATNNTYYVNKED 488 Query: 225 YEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEI 277 AHD+L+ V +T + + R ++Y K+ EM +F+DLPEA+ N EI Sbjct: 489 ANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSGDEMKQLFADLPEAIINIQEI 548 Query: 278 ARRCSFILQVHAPILPRFI--------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329 + +LP+F E D + E N LR+ G E R + Sbjct: 549 IDKVEAYSLYRDVLLPKFKIPDEFEVPEDAEDGGVRGENNYLRHLTYLGAEKRYPE---- 604 Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 D ++RLDFEL I+ + GYFLIV DFI A+K ++ VGPGRGS AGS AY Sbjct: 605 ---LTDDIKERLDFELLTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYC 661 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV NKYG +VAQIIT+ Sbjct: 662 LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGSNQVAQIITY 721 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADP- 506 G + K+A+RD R L +P + DR+ KLIP +L D+S ++A ++ Sbjct: 722 GKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFLAEDESEVKKALRSEEF 781 Query: 507 -SVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 V L+EI+ LEG R+ HA G++I ++ VP+ SD Sbjct: 782 DKVKELIEIANSEDLAGETIQQAKVLEGSMRNTGIHACGVIITPSDITNFVPVTTAKDSD 841 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611 L VTQF+ E AGL+K DFLGLKTLTL++ ++ + R G+ +D P DD +TY L Sbjct: 842 LYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRLGIDLDPDNFPIDDEKTYEL 901 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 T+G+FQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RKNG+E+I Sbjct: 902 FQRGETVGVFQYESPGMQKYMKDLKPTVFADLIAMNALYRPGPLEYIPSFVRRKNGEEEI 961 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 + L ET G+ +YQEQVM ++Q L+G+S +ADVLR+AMGKK E ++K K + Sbjct: 962 KYDLEACEEYLGETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQIEVLNKMKPQ 1021 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 FI+ A++ G + I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA Sbjct: 1022 FINQAAEKGHDPVVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAV 1081 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850 ++ M++++++ F ++ ++ +Q++ P VN F V +N + + + A+KGVG Sbjct: 1082 LSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNENYAVRFGMGAVKGVGANAV 1141 Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQS----- 904 I++ + P+ S+ D ++D + N++ ESL AG D F + R Q Sbjct: 1142 DTIVQNRKEAPYKSIFDVAKKIDLRAANKKAFESLALAGGFDGFTDTHRAQYFHHDGDGI 1201 Query: 905 --LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 L+ +Y ++N + ++F + + ++ + E+ V+G Y Sbjct: 1202 TFLEKAIRYGSKFQENENSSQVSLFGDASEVQIAEPIVPPCDDWSTMEKLAKEKEVVGIY 1261 Query: 963 FSGHPLDVYKPILRKM------GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 SGHPLD YK ++ +K E+ V G N+ +V + Q + + G+ G Sbjct: 1262 ISGHPLDDYKYEMKYFCNAKLESLKSLEQHV----GKNLSFGGIVTNVQHRTAKNGN--G 1315 Query: 1017 WVTF 1020 W +F Sbjct: 1316 WGSF 1319 >gi|145594342|ref|YP_001158639.1| DNA polymerase III subunit alpha [Salinispora tropica CNB-440] gi|145303679|gb|ABP54261.1| DNA polymerase III, alpha subunit [Salinispora tropica CNB-440] Length = 1177 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 382/1077 (35%), Positives = 575/1077 (53%), Gaps = 76/1077 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YS+L+GA L ++ ++ PA+A+TD N+ A +F ++A AAG++P Sbjct: 4 SFAHLHVHTEYSMLDGAARLKDLFAEVNRQGMPAVAMTDHGNMHGANDFYKQAMAAGVKP 63 Query: 70 IIGCQLDIDMQDNL--KMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 I+G + + + K G+ + + + G L +L SR Sbjct: 64 ILGIEAYVAPESRFHKKRVRWGRPEQKSDDVSGSGGYTHMTIWAKNKVGLHNLFKLTSRS 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + R+ L E +EGLI TG SG + + A K ++ +FG Sbjct: 124 FTEGFFVKWPRMDTELLAE-HSEGLIATTGCPSGEVQTRLRLDQYDEALKAAAKYQDIFG 182 Query: 180 -DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 + ++ + H G D R ++ ++++ ++P V TN+S + + EAHDVL+ V Sbjct: 183 KENFFLEVMDH-GIDIERRVRQELAEISHKLDIPPVVTNDSHYTYQAQSEAHDVLLCVQT 241 Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSI-FSDLPEA-LENTVEIARRCS----FILQVHA 289 + V+ +R R +Y+K+ EM + S+L A NT+ +A F + Sbjct: 242 AANVADPNRFRFDGSGYYIKSADEMRGVDSSELWRAGCRNTLLVAEMVDPAGMFDFR--- 298 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 ++PRF E + +E+ R + GL R G + + ++ ++EL VI Sbjct: 299 NLMPRFPVPEGE----TDESWFRKETFKGLARRFPNGV------PETHLKQAEYELGVII 348 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F YFL+VADFIQWAK I VGPGRGS AGS+ AYAL ITD+DPL L+FERFLN Sbjct: 349 QMGFPSYFLVVADFIQWAKGEGIAVGPGRGSAAGSLVAYALGITDLDPLPHGLIFERFLN 408 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD DIDF + RR EVI+YV K+G ++VAQI TFG+++AKAA++D R L PY Sbjct: 409 PERVSMPDVDIDFDERRRGEVIKYVTEKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPY 468 Query: 470 SQVDRLCKLIPNDPA---HPVSLQAIAD--DSRFREAR------LADPSVDRLLEISQKL 518 + DR+ K +P PA + L I D SR+ EA +DP V ++++ ++ + Sbjct: 469 AVGDRITKAMP--PAVMGKDIPLTGIFDPQHSRYAEAGEIRGLYESDPDVKKVIDTARGI 526 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R HAAG+++ P+ +P+ R +TQF+ E GL+K DFLGL+ Sbjct: 527 EGLIRQTGVHAAGVIMSAEPIVDHIPLMRRDADGAIITQFDYPTCESLGLLKMDFLGLRN 586 Query: 579 LTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ +L + + G VDL +P DD TY LL+ TLG+FQL+ MR L M+P Sbjct: 587 LTIIDDALKNIESNHGRTVDLLQLPLDDTATYELLSRGDTLGVFQLDGGPMRSLLRTMKP 646 Query: 638 DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIY 691 D EDI A+++LYRPGP+ ++ Y RKNG ++I IHP L +P+ L T G+I+Y Sbjct: 647 DNFEDISAVLALYRPGPMGANSHTNYALRKNGLQEITPIHPELAEPLEEILGPTYGLIVY 706 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQV + AQ+L+GYSL +AD+LRRAMGKK KE +DK+ F G N S +++ Sbjct: 707 QEQVQRAAQVLAGYSLGKADLLRRAMGKKKKEVLDKEFVPFRDGMRANDYSDEAIQTLWD 766 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L FADY FNK+H A Y ++SY T ++K +YP E++AA +T D+ +K+ + + R+ Sbjct: 767 ILVPFADYAFNKAHTAGYGLVSYWTGYLKANYPAEYMAALLTSVGDDKDKMALYLSECRR 826 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCS 870 IQ++PP VNT F I + LAAI+ VG IM +K + DF S Sbjct: 827 MGIQVLPPDVNTSAGPFTPVGRDIRFGLAAIRNVGANVVSAIMRCRGEKGAYTDFYDFLS 886 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAH 929 +V++ N++ +ESL+ AGA D +SR LL D I YA K +++ A Sbjct: 887 KVEAVVCNKKTIESLIKAGAFDSLDHSRRGLLAVHADAIDAYADVKRKEAVGQYDLFGA- 945 Query: 930 EKGTFSDKITLEKFSV----------ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+D + +V + + FE E +LG Y S HPL + +L Sbjct: 946 ---GFADSDAGQSTTVMPVIAEGEWDKREKLAFERE--MLGLYVSDHPLFGLEHVLGAAA 1000 Query: 980 ---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I E G + LA ++ Q++ T++G T + A E FFP Sbjct: 1001 DTTIAALSEEGTVPDGTVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057 >gi|257125251|ref|YP_003163365.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b] gi|257049190|gb|ACV38374.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b] Length = 1185 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 359/1022 (35%), Positives = 577/1022 (56%), Gaps = 77/1022 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ YSLLEG ++ ++K A+AITDT+ +F A+EF +K AGI+PI Sbjct: 5 FVHLKLHTEYSLLEGVGKIDEYVEKAKKTGVKALAITDTS-MFGAIEFFKKCKNAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ +D + + F S+ LL GY+ L +L S Y ++ + Sbjct: 64 IGLEVFLDGLEKV-------GEF----SLTLLAKNQNGYKNLSKLSSISYSRFTRNRN-K 111 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ ++ L +L+GG + + + + + + K FGD ++ + Sbjct: 112 IKYDELKKY-SDDLYILSGGINSEVVKGILDLENTQVRRVVEKLGKDFGDNFFIEVPAVE 170 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR--- 247 ++ R+ + V TN+ + + +D ++ ++ + + + Sbjct: 171 RLEKARKMLFDIVRKNKFDNFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTEKSENSEI 230 Query: 248 VTPDHYLKNRSEMVSIF-----SDLPEALENTVE-IARRCSFILQVHAPILPRF------ 295 + D YLK+ +E+ F S+ E N VE I C+ + H P++ Sbjct: 231 LYDDLYLKSENEIEKSFENKEYSEFYETGINNVEKIMENCNVDFEFHHFKFPKYSLPQNI 290 Query: 296 ------------------IEKECDDIQKEE--------ENELRNKAVAGL---EVRLAQG 326 ++K D +K + + E+ +AG EV++ + Sbjct: 291 SEKEFLRNLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIQKEIAKDEIAGQKLKEVKIREE 350 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 + + ++ +R ++EL +I +M ++GYF+IV DFI+++++N + VGPGRGS AGS+ Sbjct: 351 LLKN--NLENVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPGRGSAAGSIV 408 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 +YAL IT+IDPL ++L+FERFLNP+R+SMPD DIDF Q++R+ VI YV NKYG E VA I Sbjct: 409 SYALNITEIDPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNKYGAEYVAHI 468 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506 ITFG+L+A+ A+RDVGR L + +VD++ K+IP + +L I + FR+ D Sbjct: 469 ITFGTLKARLAIRDVGRVLNVSLVKVDKIAKMIPFNTELKDALNNIPE---FRKMYGTDR 525 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 + ++++ S KLEG RHAS HAAG+VI LS +P Y D ++ + TQ+ MK +E+ Sbjct: 526 EIKKVIDYSLKLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQYQMKELEEL 585 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 G++K DFLGLK LT+L+K+++ + + R K+ L+ IP +D +TY LLT T+G+FQ ES Sbjct: 586 GILKMDFLGLKNLTILRKTVENIEKRRKTKIVLNDIPLNDEKTYELLTKADTMGVFQCES 645 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683 +G+R ++ M+ + EDIIAL++LYRPGP+ + +V + N KN + +I I + +L+ Sbjct: 646 AGIRSLMKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNRTEIKYIDDSLKYILE 705 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+I+YQEQVM+I ++ YSL EAD LRRA+GKK E M K +E+F++ A KNG+ Sbjct: 706 ETYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVTNAEKNGVFS 765 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 A I++L+ KF YGFNKSH+AAYA+I Y TA+ K +YP+EF AA +T E+ N+++ Sbjct: 766 KKANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKANYPLEFFAAIITTEVHNLDRFV 825 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDN----------RIYYSLAAIKGVGTTTARHI 853 F +A++ I I P VN DF++ ++ I + L A+KG+G I Sbjct: 826 VFVNEAKEKGINIFLPDVNLSDYDFEIEESFENNNEIKKMGIRFGLFAVKGIGAALINEI 885 Query: 854 MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 + + F S EDF R+ + ++ LES + +GALD +R + +S+D I +Y+Q Sbjct: 886 KKERENGDFSSYEDFVYRMKQNGITKKQLESFILSGALDKLNGNRFEKYKSIDKILEYSQ 945 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 ++ + +F+ EK F K +EK V ENE+ LG Y S HPL+ K Sbjct: 946 KKYESEEDLQMILFSGEK-KFKGKFEMEKADEFPQKVLLENEKEYLGIYVSSHPLNEKKR 1004 Query: 974 IL 975 ++ Sbjct: 1005 LI 1006 >gi|163753129|ref|ZP_02160253.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1] gi|161326861|gb|EDP98186.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1] Length = 1460 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 373/1092 (34%), Positives = 579/1092 (53%), Gaps = 86/1092 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----- 61 K+ F HL HS +S+L+ S+++++ +A+TD N+ A F ++ Sbjct: 258 KNAPFSHLHNHSQFSVLQSTSSISDLVKAAGKYNMQGVALTDHANMMGAFHFVKEVSNYN 317 Query: 62 ---------ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105 A A G ++PIIGC+ + ++ KT IVLL Sbjct: 318 KSIKAKIAEAEATGEAIDAQILKPIIGCEFFV------CENHEDKTRKDNGYQIVLLAKN 371 Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165 GY L ++ S Y +G V + E E +I+LTG G + Sbjct: 372 KNGYHNLAKMSSIAYT--KGFYYVPRIDKNVIEQYKEDVIVLTGNLYGEVPNKVLNIGES 429 Query: 166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEED 224 AE+ LL +K+ F D LYV + RH D R ++V V+LA HE+ LVATNNS ++++ED Sbjct: 430 QAEEALLWWKETFQDDLYVEIMRHNQEDENRVNEVLVRLAKKHEVKLVATNNSYYIAQED 489 Query: 225 YEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEI 277 AHDVL+ V +T + + R ++Y K+ EM ++F DLP+A+ + EI Sbjct: 490 ATAHDVLLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSPDEMKTLFKDLPDAILSIQEI 549 Query: 278 ARRCSFILQVHAPILP--------RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329 + +LP +F E + D ++ E LR+ G + R Sbjct: 550 VDKVEPFELARDVLLPAFDIPEEFQFEEDKIDGGKRGENKYLRHLTYEGAKKRY------ 603 Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 G + +RLDFEL I + GYFLIV DFI+ A+ ++ VGPGRGS AGSV AY Sbjct: 604 -GEITPEIEERLDFELGTIENTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVAYC 662 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV +KYG +VAQIIT+ Sbjct: 663 LWITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIDKYGANQVAQIITY 722 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSV 508 G++ AK+++RD R L +P S+ DR+ KLIPN + ++ A+ +FR + + Sbjct: 723 GTMAAKSSIRDTARVLDLPLSEADRIAKLIPNTKLAKIFGKSEAELKQKFRSEEVL--LI 780 Query: 509 DRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 + L+ IS++ LEG R+ HA G++I +++ VP+ SD+ Sbjct: 781 NELINISEEDGLAAETVNMARVLEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDMYC 840 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTT 614 TQF+ +E AGL+K DFLGLKTLTL++ ++ + + V +D+ IP DD ETY L Sbjct: 841 TQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKYKHDVDIDIENIPLDDEETYALFQR 900 Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674 T+G+FQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RK+G+E I Sbjct: 901 GETVGVFQYESPGMQKHMKSLKPTTFADLIAMNALYRPGPMEYIPSFIRRKHGEEDIEYD 960 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 L+ET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK K +DK K +FIS Sbjct: 961 LDACQEYLEETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQKAVLDKMKPKFIS 1020 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 AS G ++ I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ Sbjct: 1021 QASAKGHAEDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSN 1080 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHI 853 M++++ I F ++ ++ + ++ P VN F V D + + + AIKGVG + I Sbjct: 1081 NMNDIKTITFFMEECKRMKLDVLGPDVNESFYKFTVNDEGAVRFGMGAIKGVGHGAVKTI 1140 Query: 854 MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQS-------L 905 ++ ++ + S+ D R+D + N++ E+L AG D FG + R Q + L Sbjct: 1141 VKERSEGKYKSVFDLAKRIDLRAANKKAFENLALAGGFDSFGDTHRAQYFHTENDGITFL 1200 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + KY ++N+ + ++F ++ + + + E+ V+G Y SG Sbjct: 1201 EKAVKYGAKFQENKNSAQVSLFGEASEVQIEEPKVPPCEEWGTMEKLAREKEVVGIYISG 1260 Query: 966 HPLDVYKPILRKMGIKG---YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS- 1021 HPLD +K + K KG Y + I A +V Q + ++ G GW F+ Sbjct: 1261 HPLDDFKAEM-KFFCKGDLSYFSRMEEYVNREIPFAGVVTEVQHRVSKNGK--GWALFTV 1317 Query: 1022 -EPAKEYEANFF 1032 + ++ YE F Sbjct: 1318 EDYSESYEFRIF 1329 >gi|167754597|ref|ZP_02426724.1| hypothetical protein CLORAM_00099 [Clostridium ramosum DSM 1402] gi|167705429|gb|EDS20008.1| hypothetical protein CLORAM_00099 [Clostridium ramosum DSM 1402] Length = 1017 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 356/971 (36%), Positives = 555/971 (57%), Gaps = 56/971 (5%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQV+SSYS + + +++ K + A+A+TD +N++ A+E ++ A GI+ + G Sbjct: 4 HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + +++ + +P ++LL GY L+++ S + L ++G S+ Sbjct: 64 LEASVEINHEI---------YP----LLLLARDVTGYFDLVKITSEICLSERGAISLE-A 109 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-G 191 LS +E L +++ G I+R A K L FK F + YV LQ H Sbjct: 110 LSLYRE----HLFVISACKEGIIERLILKELDSEALKYLELFKNTFNN-FYVGLQNHGIA 164 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 + ++V LA +P+ TN +L++++ D+L A A ++ + + + T Sbjct: 165 MQQKLNERLVALATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKGMMLDLEHQVQ-TDQ 223 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDIQKEEE 308 YLK+ EM S+F + +ENT +I R C+ + Q+H P P + K+ D Sbjct: 224 LYLKSSFEMESLFD--KKYIENTNDIIRLCNVTIPTDQMHLPKYP--VPKDGD-----AG 274 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR + GL+ R I +Y +RL EL VI +M F+ YFLIV D++++AK Sbjct: 275 DYLRQLCLVGLKKRFKGKNIP-----NEYIERLKKELTVINKMGFNDYFLIVFDYVRYAK 329 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I VGPGRGS AGS+ AY L IT +DPLR+ LLFERFLN +R+SMPD DIDF DRRD Sbjct: 330 MHKILVGPGRGSAAGSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRD 389 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EV+ YV KYGHE VAQI+TF + K A++D+G+ L +P +++ L K IP + + S Sbjct: 390 EVVNYVTEKYGHEHVAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKS 449 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + + S F+ DP++ +++ +E L R+ STHAAG+V+ + L Q+VP+ R Sbjct: 450 AREVFETSYSFQSMVNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPLVR 509 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDH 606 + + VTQ++ +IE+ GL+K DFLGLK LT++ + D V+++++ I D Sbjct: 510 GPNNGV-VTQYSKDYIEEVGLLKMDFLGLKNLTIIDYIIKDIAKNHQVEININDIDLQDK 568 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +++ T GIFQLESSGM+ L MQ DC++D+IA ++L+RPGP+ NI Y RK Sbjct: 569 KTYEMISRGDTFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMANIPSYIARKK 628 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKE I + P+LK T G+++YQEQ+MQ AQL++G+SL++AD+LR+AM KK M Sbjct: 629 GKEPITYPLECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMK 688 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K FI G NG S+ AV +FEL+ +FA+YGFNKSH+ Y I+Y A++K ++P+E Sbjct: 689 AMKSEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLE 748 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F +A ++ E + Q+ +++ ++++ PS+N FKV D I YSL AIK VG Sbjct: 749 FFSALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKVEDGNIRYSLLAIKNVG 808 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + I + F + DF SR++S KLN ++L+SL+ AGA D F +R + Q+L Sbjct: 809 YAGYKAIEAERQNGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLH 868 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 I +YA+ KN E +T+ + +N E E+ VLG Y + H Sbjct: 869 KIMEYAEL--KNSIGIEE----------PPILTIVR---DNRIKVLEEEKMVLGVYLTMH 913 Query: 967 PLDVYKPILRK 977 P+ + K L++ Sbjct: 914 PIALIKNNLKE 924 >gi|312888892|ref|ZP_07748454.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM 18603] gi|311298633|gb|EFQ75740.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM 18603] Length = 1195 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 381/1090 (34%), Positives = 592/1090 (54%), Gaps = 94/1090 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ +SLL+GA ++ + K AAD A+AITD N+F +F +A ++ Sbjct: 2 PDFSHLHVHTQFSLLDGAADISKLYKKAAADGMKALAITDHGNMFGVFKFVAEAGKHNVK 61 Query: 69 PIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PI+GC+ + D + + T + K + L AEGY+ LI+L S Y+ + Sbjct: 62 PIVGCEFYVVDDRHKKQFTKEKKD---VRRHQLFLAKNAEGYKNLIKLCSLGYMEGLYSK 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI + + +GLI + + +A + + AE + LFG+ Y+ LQ Sbjct: 119 WPRIDKELILKY-HKGLIATSCCIGASVPQAILKATEEEAETEFKWWLDLFGEDYYIELQ 177 Query: 188 RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 RH ++ + +++ A + + + +N+S ++ ++D AHD+L+ V + S P Sbjct: 178 RHEIPEQTIINNTLLKYAKKYNVKTICSNDSHYVDQQDSNAHDILLCVNTGDMQST---P 234 Query: 247 RVTPDH--------------YLKNRSEMVSIFSDLPEALENTVEIARRCSF------ILQ 286 T + Y K ++EM +F D+PE+L+NT EI + I+ Sbjct: 235 IATDEEGGKGYRFGFPNDQFYFKTQAEMGQLFHDIPESLDNTNEIVDKVDVLKLKRDIML 294 Query: 287 VHAPILPRF---IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 + PI P F E D + + E L++ G + R ++ + +R++F Sbjct: 295 PNFPIPPEFAIHTGPESDTLNQWEY--LKHLTFTGAKERYIDISL-------ETEERINF 345 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL I M F+GYFLIVADFI+ + + +GPGRGS AGSV AY IT+IDP++++LL Sbjct: 346 ELFTIRTMGFAGYFLIVADFIKHGRDIGVFIGPGRGSAAGSVVAYCTGITNIDPMKYNLL 405 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR SMPD D DF + R +VI YV KYG +VAQIIT+GS+ A+ +++DVGR Sbjct: 406 FERFLNPDRKSMPDIDTDFDDEGRQKVIDYVVEKYGKNQVAQIITYGSMAARTSIQDVGR 465 Query: 464 ALQMPYSQVDRLCKLIPN-------DPAHPV-SLQAIADDSRFREARLADPSVDRLLEIS 515 L MP S+V+ + KL+P+ D V L+AI + + R ++L + Sbjct: 466 VLDMPLSEVNLMKKLVPDTLGITLKDAIEQVPELKAILEGNDLRS---------QVLRAA 516 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +KLEG R+ HAAGI+I L+ +VP+ SDL VTQ++ + IE AG+IK DFLG Sbjct: 517 EKLEGSVRNTGVHAAGIIIAPDDLTNIVPVAVAKDSDLLVTQYDGRVIEDAGVIKMDFLG 576 Query: 576 LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 LKTLT+++ +L + Q G ++D+ I DD +TY L T G FQ ES GM+ L Sbjct: 577 LKTLTIIKGALRMIKQNHGREIDIDYIDLDDQKTYELYQRGDTNGTFQFESDGMQMYLRD 636 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694 ++PD ED+IA+ +LYRPGPI+ I + RK+G E I P ++ L ET G+ +YQEQ Sbjct: 637 LKPDKFEDLIAMNALYRPGPIEYIPNFIKRKHGLEPITYDLPDMEEYLAETYGITVYQEQ 696 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM ++Q L+G+S +ADVLR+AMGKK E ++K + +F+SGA+ G K I+ Sbjct: 697 VMLLSQKLAGFSKGDADVLRKAMGKKQIEILNKMEAQFVSGATAKGHPKDKLTKIWNDWK 756 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSH+ YA+++YQTA++K HYP E++A+ + +N+EKI F ++ R+ Sbjct: 757 AFAQYAFNKSHSTCYALVAYQTAYLKAHYPSEYMASVLN-NQNNMEKISFFMEECRRMGT 815 Query: 815 QIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV 872 ++ P VN V F G+ I + L+ IKGVG I+E + F S+ +F R Sbjct: 816 LVLGPDVNESSVLFTATGNGNIRFGLSGIKGVGDKAVESIIEERDKNGAFTSVYEFAQRS 875 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQ--------LLQSLDNIQKYAQWVEKNRTNKHE 924 ++K +NR+ E++V++GA D FG+ R Q +L ++ + KYA + + + Sbjct: 876 NTKAVNRKSYENMVYSGAFDSFGFKRAQFFAKTENGVLSGIERLTKYANDYQNTQNSSQS 935 Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK------------ 972 ++F ++ + T+ + + + E+ V+G Y +GHPLD YK Sbjct: 936 SLFGGSVASYIPEPTMPEAEEFPLIEKLKYEKEVIGIYLTGHPLDNYKIELERFCKHTVA 995 Query: 973 --PILRKMGIK-GYEESVATIRGNNIR-------LAAMVVSKQQKKTRKGSRIGWVTFSE 1022 ++++M K G EE+ I NN+R + ++ S Q K T+ G G F + Sbjct: 996 DLKLIQRMKNKEGGEET--EIAFNNLRRTASELSIGGLLSSVQHKTTKTGKPFGTFVFED 1053 Query: 1023 PAKEYEANFF 1032 YE F Sbjct: 1054 YFDSYEFALF 1063 >gi|150010065|ref|YP_001304808.1| DNA polymerase III subunit alpha [Parabacteroides distasonis ATCC 8503] gi|262382633|ref|ZP_06075770.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B] gi|298374425|ref|ZP_06984383.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19] gi|149938489|gb|ABR45186.1| DNA polymerase III alpha subunit [Parabacteroides distasonis ATCC 8503] gi|262295511|gb|EEY83442.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B] gi|298268793|gb|EFI10448.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19] Length = 1267 Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust. Identities = 371/1124 (33%), Positives = 588/1124 (52%), Gaps = 122/1124 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61 F+HL VH+ YSLL+G S++ ++DK D AIA+TD +F EF K Sbjct: 4 FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 63 Query: 62 ------------------------------------ACAAGIQPIIGCQLDIDMQDNLKM 85 A A+ +PIIGC+ N + Sbjct: 64 GIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYC--ARNGRH 121 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + + +++L GY+ LI++VS + +G L E E LI Sbjct: 122 SKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWT--EGFYGRPRIDKELLEKYHEDLI 179 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV----- 200 + + G I + AE+ + FK LFG+ Y+ +QRH +D + + Sbjct: 180 ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239 Query: 201 ------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 ++LA+ H + L+ATN+ F++ +D EAHD L+ ++ + R R + ++ Sbjct: 240 EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 299 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI------------------ 296 K +EM +IF+D+PEAL NT+EIA + F PI+P F Sbjct: 300 KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359 Query: 297 --------EKECDDIQKEEENELRNKAVAGLE----VRLAQGAIAKGYH----------- 333 ++ + + EEE + K + G + ++L +AK + Sbjct: 360 DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392 + ++RL+FEL+++ M F GYFLIV DFI+ A++ + VGPGRGS AGS AY L I Sbjct: 420 NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGI 479 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD D DF D R EV+R+V KYG ERVA IIT+G++ Sbjct: 480 TKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTM 539 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSV 508 K+A++DV R ++P S+ +RL KL+P+ + AI +EA DP Sbjct: 540 ATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAANGNDPLA 599 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 L+ +Q LEG R+ HA G++IG +S +VP+ +D ++ VTQ+ IE Sbjct: 600 RDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIE 659 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 + GLIK DFLGLKTL++++++++ + G +D+ I +D +TY L T G FQ Sbjct: 660 ETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKTTGTFQF 719 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L+ +QP ED+IA+ +LYRPGP+D I + RK GKE+I P+++ LK Sbjct: 720 ESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLK 779 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+ E+M+ K +F++G NG + Sbjct: 780 DTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQANGYKE 839 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 I+ KFA Y FNKSHA Y+ ++YQTA++K ++P E++AA ++ + N+ I Sbjct: 840 ETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLSNITDIT 899 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKP 861 KF + + IQ++ P VN + F V N+ I + L A+KGVG + ++I+E + P Sbjct: 900 KFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEERKKNGP 959 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQW 914 + S+ DF RV+ N++ +ES+ AGA D FG R Q LD + +Y Sbjct: 960 YKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGELFLDTLVRYGNK 1019 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 + +++ ++F + K + + + R E+ ++G Y S HPLD Y+ I Sbjct: 1020 YQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPLDEYRII 1079 Query: 975 LRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 L+ + G E T++G + L +V ++ T+ G G Sbjct: 1080 LKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYG 1123 >gi|256838875|ref|ZP_05544385.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13] gi|256739794|gb|EEU53118.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13] Length = 1267 Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust. Identities = 371/1124 (33%), Positives = 588/1124 (52%), Gaps = 122/1124 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61 F+HL VH+ YSLL+G S++ ++DK D AIA+TD +F EF K Sbjct: 4 FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 63 Query: 62 ------------------------------------ACAAGIQPIIGCQLDIDMQDNLKM 85 A A+ +PIIGC+ N + Sbjct: 64 GIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYC--ARNGRH 121 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + + +++L GY+ LI++VS + +G L E E LI Sbjct: 122 SKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWT--EGFYGRPRIDKELLEKYHEDLI 179 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV----- 200 + + G I + AE+ + FK LFG+ Y+ +QRH +D + + Sbjct: 180 ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239 Query: 201 ------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 ++LA+ H + L+ATN+ F++ +D EAHD L+ ++ + R R + ++ Sbjct: 240 EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 299 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI------------------ 296 K +EM +IF+D+PEAL NT+EIA + F PI+P F Sbjct: 300 KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359 Query: 297 --------EKECDDIQKEEENELRNKAVAGLE----VRLAQGAIAKGYHA---------- 334 ++ + + EEE + K + G + ++L +AK + Sbjct: 360 DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419 Query: 335 -QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392 + ++RL+FEL+++ M F GYFLIV DFI+ A++ + VGPGRGS AGS AY L I Sbjct: 420 DDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGI 479 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD D DF D R EV+R+V KYG ERVA IIT+G++ Sbjct: 480 TKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTM 539 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSV 508 K+A++DV R ++P S+ +RL KL+P+ + AI +EA DP Sbjct: 540 ATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAANGNDPLA 599 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 L+ +Q LEG R+ HA G++IG +S +VP+ +D ++ VTQ+ IE Sbjct: 600 RDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIE 659 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 + GLIK DFLGLKTL++++++++ + G +D+ I +D +TY L T G FQ Sbjct: 660 ETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKTTGTFQF 719 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L+ +QP ED+IA+ +LYRPGP+D I + RK GKE+I P+++ LK Sbjct: 720 ESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLK 779 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+ E+M+ K +F++G NG + Sbjct: 780 DTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQANGYKE 839 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 I+ KFA Y FNKSHA Y+ ++YQTA++K ++P E++AA ++ + N+ I Sbjct: 840 ETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLSNITDIT 899 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKP 861 KF + + IQ++ P VN + F V N+ I + L A+KGVG + ++I+E + P Sbjct: 900 KFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEERKKNGP 959 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQW 914 + S+ DF RV+ N++ +ES+ AGA D FG R Q LD + +Y Sbjct: 960 YKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGELFLDTLVRYGNK 1019 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 + +++ ++F + K + + + R E+ ++G Y S HPLD Y+ I Sbjct: 1020 YQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPLDEYRII 1079 Query: 975 LRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 L+ + G E T++G + L +V ++ T+ G G Sbjct: 1080 LKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYG 1123 >gi|293192339|ref|ZP_06609450.1| DNA polymerase III, alpha subunit [Actinomyces odontolyticus F0309] gi|292820254|gb|EFF79248.1| DNA polymerase III, alpha subunit [Actinomyces odontolyticus F0309] Length = 1180 Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust. Identities = 373/1076 (34%), Positives = 578/1076 (53%), Gaps = 74/1076 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL HS YS+L+GA + ++ A QPAI +TD LF A +F AG++P Sbjct: 4 SFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAFDFYTNCKNAGVKP 63 Query: 70 IIGCQLDI-------DMQDNLKMTNQGK----TPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IIG + + D Q L + + + + L+ G L L S Sbjct: 64 IIGLEAYVTPGTSRFDRQKVLWGEPWQRADDVSAGGSYNHLTLVAYNTTGMHNLFRLGSY 123 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 Q + R L + EGLI+ TG SG + A + +F Sbjct: 124 ASTDGQFGKWPRADKELLSQF-HEGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRDIF 182 Query: 179 G-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 G + YV + H G D R QV+++A PLVATN++ ++ ED + D L+ + Sbjct: 183 GAENFYVEVMDH-GIDIERRTHQQVLEIAKLMNAPLVATNDAHYVKREDRKIQDALLCIN 241 Query: 236 HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPI 291 + ++ DR + D +Y+++ EM +++S+LP A ++T+EIA RC + A Sbjct: 242 SGSRINDPDRFKFDGDGYYIRSSDEMRALWSELPGACDSTLEIAERCDVHFTTTKEGANY 301 Query: 292 LPRFIEKECDD----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 +P F E +D KE E LR++ G+ D R++ +E +V Sbjct: 302 MPDFPVPEGEDKTSWFIKEVERGLRDRFPNGI--------------PDDVRKQAQYEEDV 347 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M F GYFL VAD+I WAK I VGPGRGSGAGS+ AYAL IT+++PL L+FERF Sbjct: 348 IIKMGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYALKITELNPLEHGLIFERF 407 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D R L Sbjct: 408 LNPERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGK 467 Query: 468 PYSQVDRLCKLIPNDPA---HPVSLQAIADD--------SRFREARLADPSVDRLLEISQ 516 + ++L K +P PA +++ I D+ S FR+ +P +++ + Sbjct: 468 DFKVGEQLTKALP--PAIMGKDITVHGIFDEKDKRYAEASEFRKFYEENPDTHEVVQYAL 525 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 LEGL R HA +++ L+ ++P+ + + +TQF+ E GL+K DFLGL Sbjct: 526 GLEGLTRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGL 585 Query: 577 KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT++ +L+ +A G DL + FDD +TY LL TLG+FQL+ GMR L+ M Sbjct: 586 RNLTVVSDALENIALNGKPDPDLDHLTFDDKKTYELLGRGDTLGVFQLDGGGMRDLLKLM 645 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVI 689 +PD EDI A+ +LYRPGP+ ++ Y RKNG+++I IHP L +P+ L T G+I Sbjct: 646 KPDNFEDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEDILGTTFGLI 705 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQIAQ L+GYSL +AD+LR+AMGKK KE +D+Q + F G NG S+ + Sbjct: 706 VYQEQVMQIAQKLAGYSLGQADILRKAMGKKKKEVLDQQFKGFRQGMVANGYSEESIKAL 765 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++++ F+ Y FNK+H+AAY ++SY TA++K ++P E++AA +T DN ++ + + Sbjct: 766 WDVVVPFSAYAFNKAHSAAYGLVSYWTAFLKANFPTEYMAALLTSTKDNKDRRALYLAEC 825 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDF 868 R +I ++PP VN +F I + L AI+ VG I+E A+K F S +DF Sbjct: 826 RHMDITVLPPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVETRAEKGRFASFQDF 885 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF- 927 +V N+R ++SL+ AGA D G++R LL D V++N ++F Sbjct: 886 LDKVPQVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFG 945 Query: 928 --AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 ++ T S I + + + E+ +LG Y S HPL + L + + YE Sbjct: 946 ALGEDEDTGSGLTIDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARH--QDYE 1003 Query: 985 ESVATIRGNN-------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +A + G++ +++A ++ K T++G+ T + + + FFP Sbjct: 1004 --IAQVVGSDGAMADRIVKIAGLISGVTTKVTKQGNAWAIATIEDMSGSVDVLFFP 1057 >gi|237733766|ref|ZP_04564247.1| DNA polymerase III dnaE [Mollicutes bacterium D7] gi|229383104|gb|EEO33195.1| DNA polymerase III dnaE [Coprobacillus sp. D7] Length = 977 Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust. Identities = 355/971 (36%), Positives = 553/971 (56%), Gaps = 56/971 (5%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQV+SSYS + + +++ K + A+A+TD +N++ A+E ++ A GI+ + G Sbjct: 4 HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + +++ + +P ++LL GY L+++ S + L ++G S+ Sbjct: 64 LEASVEINHEI---------YP----LLLLARDVTGYFDLVKITSEICLSERGAISLE-A 109 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-G 191 LS +E L +++ G I+R A K L FK F + YV LQ H Sbjct: 110 LSLYRE----HLFVISACKEGIIERLILKELDSEALKYLELFKNTFNN-FYVGLQNHGIA 164 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 + ++V LA +P+ TN +L++++ D+L A A ++ + + + T Sbjct: 165 MQQKLNERLVALATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKGMMLDLEHQVQ-TDQ 223 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKECDDIQKEEE 308 YLK+ EM S+F + +ENT +I R C+ + Q+H P P + K+ D Sbjct: 224 LYLKSSFEMESLFD--KKYIENTNDIIRLCNVTIPTDQMHLPKYP--VPKDGD-----AG 274 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR + GL+ R I +Y +RL EL VI +M F+ YFLIV D++++AK Sbjct: 275 DYLRQLCLVGLKKRFKGKNIP-----NEYIERLKKELTVINKMGFNDYFLIVFDYVRYAK 329 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I VGPGRGS AGS+ AY L IT +DPLR+ LLFERFLN +R+SMPD DIDF DRRD Sbjct: 330 MHKILVGPGRGSAAGSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRD 389 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EV+ YV KYGHE VAQI+TF + K A++D+G+ L +P +++ L K IP + + S Sbjct: 390 EVVNYVTEKYGHEHVAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKS 449 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + + S F+ DP++ +++ +E L R+ STHAAG+V+ + L Q+VP+ R Sbjct: 450 AREVFETSYSFQSMVNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPLVR 509 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDH 606 + + VTQ++ +IE+ GL+K DFLGLK LT++ + D V+++++ I D Sbjct: 510 GPNNGV-VTQYSKDYIEEVGLLKMDFLGLKNLTIIDYIIKDIAKNHQVEININDIDLQDK 568 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +++ T GIFQLESSGM+ L MQ DC++D+IA ++L+RPGP+ NI Y RK Sbjct: 569 KTYEMISRGDTFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMANIPSYIARKK 628 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKE I + P+LK T G+++YQEQ+MQ AQL++G+SL++AD+LR+AM KK M Sbjct: 629 GKEPITYPLECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMK 688 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K FI G NG S+ AV +FEL+ +FA+YGFNKSH+ Y I+Y A++K ++P+E Sbjct: 689 AMKSEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLE 748 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F +A ++ E + Q+ +++ ++++ PS+N FKV D I YSL AIK VG Sbjct: 749 FFSALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKVEDGNIRYSLLAIKNVG 808 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + I + F + DF SR++S KLN ++L+SL+ AGA D F +R + Q+L Sbjct: 809 YAGYKAIEAERQNGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLH 868 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 I +YA+ KN D+ + +N E E+ VLG Y + H Sbjct: 869 KIMEYAEL--KNSIG-------------IDEPPILTIVRDNRIKVLEEEKMVLGVYLTMH 913 Query: 967 PLDVYKPILRK 977 P+ + K L++ Sbjct: 914 PIALIKNNLKE 924 >gi|315115543|ref|YP_001699725.2| DNA polymerase III subunit alpha [Lysinibacillus sphaericus C3-41] Length = 1027 Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust. Identities = 361/1034 (34%), Positives = 561/1034 (54%), Gaps = 60/1034 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + V+ ++H+S LL+ + L ++ + + A AI +T L+ L F + A I Sbjct: 2 THVYTKMHTSADLLKSTIRLEQLIPFLLEQKTQACAIVNTK-LYGLLPFCKAMQQAKIHA 60 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G +++ D T+P +VL + EGYQ+L+++ S + + G Sbjct: 61 VMGLSVNVQWHDT------------TLP-LVLYAQSQEGYQQLLKISSAASIREDGV--- 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-----LLTFKKLFGDRLYV 184 + WL+ L +L+ S +AE + + LF Y+ Sbjct: 105 -LPWKWLEGYAAGCLALLS--------------SDDLAELKDWHGVVSALAHLFQHHFYM 149 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + R G E+++V+ +PLVA + FL ED+ A++V A+ + Sbjct: 150 GITRPGGVALANENELVEWCEGQRIPLVAVQSCYFLRPEDHFAYEVARAIDTGDKLGDTM 209 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 ++ E S F+D PE LE ++ C I+ + +P+F + Sbjct: 210 LTAKLQGYFAPTAQEWQSWFTDRPEWLETCGQMLASCRAIIPEMSVQMPKF----PVPVG 265 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E+ L +A +GLE R Q I GY R+RL +EL +I M F+ YFL+VADF+ Sbjct: 266 ETAESLLVKEAFSGLEERFNQLDIPYGY-----RERLRYELEIICSMGFADYFLVVADFM 320 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AK N I GPGRGS AGS+ AY+L IT +DPL + LLFERFLNP+R+S+PD DIDF Sbjct: 321 RFAKDNRILTGPGRGSSAGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVD 380 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +R +VI+YV KYG VAQIITFG+L AKA RDV R ++++ K+IPN P Sbjct: 381 SKRHQVIQYVAQKYGKGNVAQIITFGTLSAKAVARDVARVFGFGAEVLEKISKMIPNKPG 440 Query: 485 HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++LQ A+ + +E D R E++QKLEGL R++STHAAGIVI L V Sbjct: 441 --ITLQKALEESYDLQEWLSEDHQHQRWFEVAQKLEGLPRNSSTHAAGIVIAPSSLVNTV 498 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIP 602 P+ D + TQ+ M +E +GL+K DFLGL+ LT+L++ G +D IP Sbjct: 499 PI-EDGHEGIYCTQWPMGDVEASGLVKMDFLGLRNLTILEQIRWSIYKAGGPWIDFERIP 557 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 D +T+ LL + T GIFQLES GM+QAL + P DI+A+ +LYRPGP++ I VY Sbjct: 558 MHDEKTFQLLQSGDTSGIFQLESEGMKQALRDIHPTQFLDIVAVNALYRPGPMEFIPVYA 617 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK GKE +V HP+++P+L+ET GVI+YQEQ+++IA +L+G+S+ +AD+LRRA+ KK + Sbjct: 618 RRKAGKELVVMPHPVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNR 677 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + +++Q+ F+ GA K G + +A ++EL+ +FADYGF KSHA AY++ISYQ A++K H Sbjct: 678 QVLEEQQVTFVQGALKQGYDQHVATEVYELIVRFADYGFPKSHAVAYSIISYQMAYLKAH 737 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 +P F AA ++ NV+KI++ Q+A+ I PPS+ F V I YSLA I Sbjct: 738 FPQSFYAALLSNATGNVDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEGIRYSLAGI 797 Query: 843 KGVGTTTARHIMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 KGV T I P +L D + ++ +V+ESL++AGALD R Sbjct: 798 KGVPHTFIESINTLRQTNPQALYNLFDLAVALSAQHFKPKVIESLIYAGALDYLEKDRAV 857 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L+ ++D K+A+ + R N+ +I + F ++ + + +E+ LG Sbjct: 858 LIMTIDAALKHAELL---RPNEDIDISTATEFNFGKPKYMQVDDMPQKE-KLIHEKESLG 913 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 FY S HP+ +P + E + +R G +++ ++ ++ +T+KG ++ +V Sbjct: 914 FYISAHPVTQERPYWADVNCTSRE--LKQMRDGTYVKMIGVMEEVKKIRTKKGEQMAFVQ 971 Query: 1020 FSEPAKEYEANFFP 1033 + A FP Sbjct: 972 LQDEHGSVSATLFP 985 >gi|325282335|ref|YP_004254876.1| DNA polymerase III, alpha subunit [Deinococcus proteolyticus MRP] gi|324314144|gb|ADY25259.1| DNA polymerase III, alpha subunit [Deinococcus proteolyticus MRP] Length = 1337 Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust. Identities = 325/770 (42%), Positives = 464/770 (60%), Gaps = 42/770 (5%) Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 + A LP + ++C ++ + + G E + A HA +R ++EL Sbjct: 430 EAEAGALPAYAHEDCRRASVQDSDTAIDP---GTEEPSEETTRAHHRHALVILRRAEYEL 486 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI M F YFLIVAD+I WAK +I VGPGRGSGAGS+ AYA+ IT++DPL F LLFE Sbjct: 487 SVINNMGFPDYFLIVADYINWAKDQDISVGPGRGSGAGSLVAYAMRITNLDPLEFDLLFE 546 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNPDR+SMPDFDIDF RR EV+ YVQ KYG ++VAQI TFG++ +KA L+DV R + Sbjct: 547 RFLNPDRISMPDFDIDFNDARRMEVVEYVQRKYGEDKVAQIATFGTMASKACLKDVARVM 606 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQ----AIADDSRFREARLADPSVDRLLEISQKLEGL 521 + Y++VD++ KLIP SL+ A+ D ++ EA D + E +QKLEGL Sbjct: 607 GVEYTKVDKVSKLIPVKFGKSYSLEQAREAVPDIAQMLEA---DTELRGAYEFAQKLEGL 663 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 RHAS HAAG+VIG L+ LVP+ RD V Q++MK +E GLIK DFLGL+TL+ Sbjct: 664 TRHASVHAAGVVIGREDLTNLVPIMRDTSGSGIVCQYDMKSVEDIGLIKMDFLGLRTLSF 723 Query: 582 LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 L ++ L + +G+++D +PFDD TY L++ T G+FQLE +G+ A ++P + Sbjct: 724 LDEARRILRESKGIEMDFDTVPFDDEATYELMSRGDTKGVFQLEGAGITDASRRLRPRRL 783 Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQV 695 DIIAL +LYRPGP++NI Y R +G E++ + ++P+L+ET G+ +YQEQ+ Sbjct: 784 ADIIALSALYRPGPMENIPTYVRRHHGVEEVTYEDFPNSEKWLEPILRETYGIPVYQEQI 843 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQIA ++GYSL AD+LRRAMGKK EM KQ++ F+ GA NG+ + A +F+LL Sbjct: 844 MQIASDVAGYSLGGADLLRRAMGKKDAAEMTKQRQLFVEGAEGNGVPRDEANKLFDLLDA 903 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA+YGFNKSH+AAY VI+YQTAW+K +YPVEF+AA +T+E + +K+ ++ DAR+ +++ Sbjct: 904 FANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAALLTVERRDSDKVAEYISDARKMDVR 963 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDS 874 ++PP +N DF V IY+ L AIKG+G I+ E F+SL +FCSR+D+ Sbjct: 964 VLPPDINRSSSDFAVAGEEIYFGLYAIKGLGEAAVLRILDERERAGHFESLANFCSRIDN 1023 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K NR+ LESL+ +GA D FG R QLL+SLD+ + A K I + Sbjct: 1024 KTCNRKALESLIKSGAFDAFG-ERRQLLESLDDALEDAAGTAK--------INQRAQAGM 1074 Query: 935 SDKITLEKFSVE---NSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIK--- 981 S L++ E S V R E+ LG Y SGHPL+ ++ + + Sbjct: 1075 SMMFALDEVVEERPLRSGVPPFTELERLAAEKEALGLYISGHPLEQHEGLREAASCRIAD 1134 Query: 982 ---GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 +E + LA M+ Q+K T+ G + ++ + + E Sbjct: 1135 LDSWFEVQPKKGKRQKAVLAGMIEGVQKKPTKSGGMMARFILADESGQIE 1184 Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 16/294 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQP-----AIAITDTNNLFSALEFSQ 60 EK F HL H+ YSLL+GA L ++L K A + P A+A+TD N+ A+ F Sbjct: 27 EKPKRFAHLHQHTQYSLLDGAAKLKDLL-KWAKETSPEGSDAALAMTDHGNMHGAVHFYN 85 Query: 61 KACAAGIQPIIGCQ-LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 A AG++PI+G + + + +G+ + + LL EGYQ L L SR Sbjct: 86 YAQDAGVKPILGYEAYVVPGFGTRRDRTRGQDGEKGIYHLTLLARDFEGYQNLCRLSSRG 145 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Y + RI LQE ++G+I +G + + A++RLL ++ LFG Sbjct: 146 YT-EGYYYKPRIDHELLQE-HSKGVIAFSGCLGSEVQQLLLMGRHDEAKERLLWYRDLFG 203 Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHS 237 + Y+ +Q H G ++ + + EL +VATN+ ++ +ED H+ L+A+ Sbjct: 204 ENYYIEIQNH-GLKEQDQNNPILRQWAQELGIGMVATNDGHYVKKEDATPHETLLAIQTK 262 Query: 238 TVVSQKDRPRVTPDH-YLKNRSEMVSIF--SDL-PEALENTVEIARRCSFILQV 287 ++ ++R + D Y+K+ EM + SD E +N IA C+ L V Sbjct: 263 ATLADENRFKFPCDEFYVKSLEEMQAALPVSDWGEEVFDNAANIADLCNVELPV 316 >gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271] gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271] Length = 1485 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 357/1085 (32%), Positives = 574/1085 (52%), Gaps = 78/1085 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 F HL H+ +S+L+ S+ +++ A ++ PA+A+TD+ N+ +A F Q A Sbjct: 255 FAHLHNHTQHSILQSTTSIKDLVKITAKEKMPAVALTDSGNMMAAFHFVQAVQAHNKEAE 314 Query: 67 -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 I+PIIGC+ +I +++L + Q +V+L +GY Sbjct: 315 AKNKEAEEKGETPTETLIKPIIGCEFNI-CENHLDRSRQDNGY-----QVVILAKNKQGY 368 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S +G V + E LI+L+GG +G + ++ AE+ Sbjct: 369 HNLTKMAS--IASTKGFYYVPRIDKVIVEQYKSDLIVLSGGMNGEVPSKILNIGTKQAEE 426 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228 LL +K+ FG+ Y+ + RH D R ++ +V+ + + + L+ATNN+ +L ++D AH Sbjct: 427 ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSKKYGVKLIATNNTFYLHKKDANAH 486 Query: 229 DVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 D+L+ V T + + R ++Y K +EM ++F D+PEA+ N EI + Sbjct: 487 DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTSAEMKALFKDIPEAILNIQEIIDKV 546 Query: 282 SFILQVHAPILPRF-----IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQ 335 +LP+F + E D K+ EN LR+ G + + + Sbjct: 547 EPYGLARDILLPKFDIPEEFQVEEDPTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 + R+RLDFEL++I + + GYFLIV DFI A++ N+ VGPGRGS AGS A+ L IT++ Sbjct: 600 EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMNVSVGPGRGSAAGSAVAFCLDITNM 659 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DP+++ LLFERFLNPDR+SMPD DIDF R +VI YV +KYG +VA+IIT+G + AK Sbjct: 660 DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719 Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-PSVDRL--- 511 +A++D R L +P + +RL L+PN + + D + + R + P VD L Sbjct: 720 SAIKDTARVLDVPLQESNRLAGLVPNGVSSLGKMFGWDDKTLKEKVRSEELPKVDELKRL 779 Query: 512 ------------LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 ++ + +EG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 780 LAGEGEEESTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618 +E AGL+K DFLGL TLTL++ +++ + Q +++D P DD +TY L T+ Sbjct: 840 NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 GIFQ ES+GM++ + ++P D+IA+ +LYRPGP++ I + RK+G E I P + Sbjct: 900 GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIESIEYDLPDM 959 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + LKET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK + K K +FI+ AS+ Sbjct: 960 EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFITQASE 1019 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 G I+ KFA Y FNKSH+ YA + YQTA++K +YP E++AA ++ M++ Sbjct: 1020 KGHDAQKLEKIWADWEKFAAYAFNKSHSTCYAWVGYQTAYLKANYPAEYMAAVLSNNMND 1079 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS 857 ++ I F ++ + ++++PP VN F V N I + + A+KGVG I+E Sbjct: 1080 IKTITFFLEECHRMGVKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909 ++P+ S+ D RVD K +N++ ES+ AG D F R Q + L+ Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGIPFLEKAI 1199 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 ++ ++++ + ++F E + + K + + E+ V+G Y SGHPLD Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDIPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259 Query: 970 VYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 +K L+ E + + +A MV Q + + G G+ T + Y Sbjct: 1260 DFKHELQNFCNISLSELQDLQPFINRELTVAGMVADLQHRTAKNGKGYGFFTLEDYDGSY 1319 Query: 1028 EANFF 1032 E F Sbjct: 1320 EFKLF 1324 >gi|154509031|ref|ZP_02044673.1| hypothetical protein ACTODO_01548 [Actinomyces odontolyticus ATCC 17982] gi|153798665|gb|EDN81085.1| hypothetical protein ACTODO_01548 [Actinomyces odontolyticus ATCC 17982] Length = 1180 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 373/1076 (34%), Positives = 578/1076 (53%), Gaps = 74/1076 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL HS YS+L+GA + ++ A QPAI +TD LF A +F AG++P Sbjct: 4 SFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAFDFYTNCKNAGVKP 63 Query: 70 IIGCQLDI-------DMQDNLKMTNQGK----TPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IIG + + D Q L + + + + L+ G L L S Sbjct: 64 IIGLEAYVTPGTSRFDRQKVLWGEPWQRADDVSAGGSYNHLTLVAYNTTGMHNLFRLGSY 123 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 Q + R L + EGLI+ TG SG + A + +F Sbjct: 124 ASTDGQFGKWPRADKELLSQF-HEGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRDIF 182 Query: 179 G-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 G + YV + H G D R QV+++A PLVATN++ ++ ED + D L+ + Sbjct: 183 GAENFYVEVMDH-GIDIERRTHQQVLEIAKLMNAPLVATNDAHYVKREDRKIQDALLCIN 241 Query: 236 HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPI 291 + ++ DR + D +Y+++ EM +++S+LP A ++T+EIA RC + A Sbjct: 242 SGSRINDPDRFKFDGDGYYIRSSDEMRALWSELPGACDSTLEIAERCDVHFTTTKEGANY 301 Query: 292 LPRFIEKECDD----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 +P F E +D KE E LR++ G+ D R++ +E +V Sbjct: 302 MPDFPVPEGEDKTSWFIKEVERGLRDRFPNGI--------------PDDVRKQAQYEEDV 347 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M F GYFL VAD+I WAK I VGPGRGSGAGS+ AYAL IT+++PL L+FERF Sbjct: 348 IIKMGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYALKITELNPLEHGLIFERF 407 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D R L Sbjct: 408 LNPERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGK 467 Query: 468 PYSQVDRLCKLIPNDPA---HPVSLQAIADD--------SRFREARLADPSVDRLLEISQ 516 + ++L K +P PA +++ I D+ S FR+ +P +++ + Sbjct: 468 DFKVGEQLTKALP--PAIMGKDITVHGIFDEKDKRYAEASEFRKFYEENPDTHEVVQYAL 525 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 LEGL R HA +++ L+ ++P+ + + +TQF+ E GL+K DFLGL Sbjct: 526 GLEGLTRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGL 585 Query: 577 KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT++ +L+ +A G DL + FDD +TY LL TLG+FQL+ GMR L+ M Sbjct: 586 RNLTVVSDALENIALNGKPDPDLDHLTFDDKKTYELLGRGDTLGVFQLDGGGMRDLLKLM 645 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVI 689 +PD EDI A+ +LYRPGP+ ++ Y RKNG+++I IHP L +P+ L T G+I Sbjct: 646 KPDNFEDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEDILGTTFGLI 705 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQIAQ L+GYSL +AD+LR+AMGKK KE +D+Q + F G NG S+ + Sbjct: 706 VYQEQVMQIAQKLAGYSLGQADILRKAMGKKKKEVLDQQFKGFRQGMVANGYSEESIKAL 765 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++++ F+ Y FNK+H+AAY ++SY TA++K ++P E++AA +T DN ++ + + Sbjct: 766 WDVVVPFSAYAFNKAHSAAYGLVSYWTAFLKANFPTEYMAALLTSTKDNKDRRALYLAEC 825 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDF 868 R +I ++PP VN +F I + L AI+ VG I+E A+K F S +DF Sbjct: 826 RHMDITVLPPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVETRAEKGRFASFQDF 885 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF- 927 +V N+R ++SL+ AGA D G++R LL D V++N ++F Sbjct: 886 LDKVPQVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFG 945 Query: 928 --AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 ++ T S I + + + E+ +LG Y S HPL + L + + YE Sbjct: 946 ALGEDEDTGSGLTIDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARH--QDYE 1003 Query: 985 ESVATIRGNN-------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +A + G++ +++A ++ K T++G+ T + + + FFP Sbjct: 1004 --IAQVVGSDGAMADRIVKIAGLISGVTTKVTKQGNAWAIATIEDLSGSVDVLFFP 1057 >gi|224541515|ref|ZP_03682054.1| hypothetical protein CATMIT_00685 [Catenibacterium mitsuokai DSM 15897] gi|224525552|gb|EEF94657.1| hypothetical protein CATMIT_00685 [Catenibacterium mitsuokai DSM 15897] Length = 1030 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 354/1026 (34%), Positives = 566/1026 (55%), Gaps = 77/1026 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HLQ+ S+YS E L +N ++D + A+A+TD NN++ A EF + A I+PI Sbjct: 11 FGHLQIKSAYSFQESTLLINALIDNAKSKHIQALALTDDNNMYGAYEFYEACKKASIKPI 70 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G I D+L + L GY+ L+ +VS + L + +++ Sbjct: 71 LGVNASIMFNDDL-------------IHLALYARDDVGYKDLVRIVSDINLNENKAITLK 117 Query: 131 ICLSWLQEIGT-----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF----KKLFGD- 180 ++ + E ++ +S + +Q+ E +L+F KKLFG Sbjct: 118 ALSNYRDHLYVVSHEYEDRLIEKEATS----KEDLLTHAQI-ESPVLSFMKTMKKLFGAS 172 Query: 181 -RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 R+ + +G+ R +++ A ++P + N+ +L D D+L A V Sbjct: 173 YRIMIVEDGLKGHT-LRNQTLIKYAQFLDIPCIWGNDVRYLHPHDAFTLDLLQASKKGEV 231 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 +S KD +T + YLK E+ +FS P+ ++NT E+ C +Q LPR+ Sbjct: 232 LS-KDYEPLTSERYLKTEKEIRELFSRYPDIIKNTEEMIDNCYGSIQKTKNGLPRYQTPH 290 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D LR+ + GL+ R I DY+ RL +EL I M + YFLI Sbjct: 291 GD-----SGAYLRHLCIKGLKQRFKNQTIT-----DDYKDRLLYELKTIHTMGYDDYFLI 340 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D++Q+AKK+ I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R+SMPD D Sbjct: 341 VFDYVQYAKKHGILVGPGRGSAAGSLVAYCLGITNIDPLKYDLLFERFLNPERVSMPDID 400 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DF DRRDEVI+YV NKYGH+ VAQI+ F + + A++D+G+ + +P +++ + K++ Sbjct: 401 VDFQDDRRDEVIQYVCNKYGHDHVAQIVAFSTYGPRVAIKDLGKVMGIPLPRLEMIAKMV 460 Query: 480 PNDPAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P H S+ + S F++ DP + RL+ +E L R+ + HAAG+V+ P Sbjct: 461 PTAPKHRKSITEVYSTSASFQDMIQKDPVLSRLIAPMSLVEYLPRNITMHAAGVVLSYEP 520 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597 L +VP+ SD+ ++Q++ +IEK GL+K DFLGLK LT++ + + +R G Sbjct: 521 LRDVVPLVIG-PSDMIMSQYSKDYIEKTGLLKMDFLGLKNLTMIDYIMKDIERRLGQTFS 579 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP +D TYHL+ T G+FQLES+GMR L M+PD +DI+A V+LYRPGP++N Sbjct: 580 INSIPLNDARTYHLIARGDTTGVFQLESNGMRSLLMKMKPDHFDDIVAAVALYRPGPMEN 639 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I +Y + K I + ++P+LK T G++IYQEQ+MQIAQ+++G+SL AD+LR+A+ Sbjct: 640 IPLYLEGRKNKNNITYLVKELEPILKSTYGIMIYQEQIMQIAQVIAGFSLGRADILRKAV 699 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + M KE F+ GA K G + IA+ +++++ KFA+YGFNKSH+ AY ++YQ A Sbjct: 700 SKKDESMMASMKEEFLQGAIKKGFDEKIALKLYQMIEKFANYGFNKSHSVAYGYMAYQLA 759 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YP+ F AA ++ E + + ++++++ ++I+PPS+N F V + I Y Sbjct: 760 YLKANYPLYFFAAILSNESGSASSKMRIIEESKRYGVKILPPSINYSYSRFVVEEGGIRY 819 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 SL +IK VG + I++ F + DF +R+ S L+ ++LESL+ AGA D F + Sbjct: 820 SLVSIKNVGAAGYKMILKEREKGLFKDMYDFLARIPS--LSSKMLESLIDAGAFDEFNKN 877 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R L +++ + +Y Q + EK F + EN R E E+ Sbjct: 878 RAYLRKNISLMLEYIQ------------LGVDEKPIFEE-------VRENKYERLERERE 918 Query: 958 VLGFYFSGHPL-----DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 VLG Y S HP+ + P++ + ++ Y + NI + + S + +KG Sbjct: 919 VLGLYVSTHPIVYVKQKIKHPLVNFVDVENYMD-------RNILVVCSISSVRAIVDKKG 971 Query: 1013 SRIGWV 1018 + ++ Sbjct: 972 REMAFI 977 >gi|293376148|ref|ZP_06622394.1| putative DNA polymerase III DnaE [Turicibacter sanguinis PC909] gi|292645221|gb|EFF63285.1| putative DNA polymerase III DnaE [Turicibacter sanguinis PC909] Length = 1010 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 344/1022 (33%), Positives = 585/1022 (57%), Gaps = 72/1022 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQV S+YSLL ++ + ++D +Q +A+ + + SA++F ++P Sbjct: 2 SFVHLQVRSAYSLLSSSIKIKELVDLALENQMSCLALVEEGTMHSAIKFYNACRRVNVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG +++ QG + + V+L GYQ L+++ S + +G Sbjct: 62 LIGMSVNV----------QGDS---FIDEWVILARNQCGYQGLLKIASFI-AKQEGVVLY 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD---RLYVNL 186 L ++Q+ L+++T G G + + E+RLL + + + LY+ L Sbjct: 108 EQVLPFVQD-----LVVITSGEHGMLCSGI----EEYKEERLLQYYESYLKSIPHLYIGL 158 Query: 187 QR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 R R Y+ + ++ A P+VA N+ +L +ED + +L A+ + V ++ Sbjct: 159 MRVNQRTYELSK--HLISFASNVNRPIVALNDVRYLKKEDAKTLTLLQAIKQNQSV--EE 214 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P V + Y K+ +M +F+D+P AL T +IA C + +H +LP++ E Sbjct: 215 LPLVDYERYFKSECQMKELFADVPNALMQTEQIANDCEVEIPLHQSLLPKYQTPEG---- 270 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++ L GLE R Y +Y RL +EL+VI +M FS YFLIV DF+ Sbjct: 271 VSSDSYLEALCFKGLEKR---------YGHLEYANRLKYELSVIHKMGFSDYFLIVWDFV 321 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AK ++I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF Sbjct: 322 RYAKSHDIYVGPGRGSAAGSLVAYVLGITNVDPIKYELLFERFLNPERITMPDIDIDFQD 381 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RRDEVI+YVQNKYG V QI TFG+ Q+++A RD+ R Q+ + ++++ I + Sbjct: 382 NRRDEVIQYVQNKYGSHCVVQIATFGTFQSRSAWRDLARVHQVETTLINKVASFIYSGS- 440 Query: 485 HPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +L+ I + ++ R+ P ++ + + ++K+EGL RH S HAAG++I D L+ Sbjct: 441 ---TLKEIYEQTKGLRDFFSTYPKLEAIYKEAEKIEGLPRHTSIHAAGVIISDHDLTDYT 497 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602 + + + V+Q+ + +E GL+K DFLGLK L +LQ+ + + + D++ IP Sbjct: 498 AIMEG-PTGIYVSQYEAEDLEMIGLLKMDFLGLKNLNMLQQITTLIKSSVAPEFDINKIP 556 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD +TY +++ T G+FQLES GMRQ L ++P+C+EDIIA +L+RPGP++ I ++ Sbjct: 557 YDDLKTYEMISQGQTTGVFQLESEGMRQVLRAVRPNCLEDIIACNALFRPGPMEGIPLFA 616 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+ ++ I HP + +L +T G+I+YQEQ+MQIA ++SGYSL EADVLRRA+ KK K Sbjct: 617 ARKHHEQPIEYYHPSLQYILSKTYGIIVYQEQIMQIANVVSGYSLGEADVLRRAVSKKKK 676 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E ++++++ F+ A + G + IA ++EL+ KFA+YGFN+SHA AY++I+YQ A++K H Sbjct: 677 EILEREQKTFVEKAIERGYHQEIATQLYELILKFANYGFNRSHAVAYSMIAYQMAYLKRH 736 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP F+ +++ + + ++ ++A+Q +I ++PPS+N+ + +++ + I +SL I Sbjct: 737 YPSYFMTVALSNVIGSESNTAQYVKEAKQLDILVLPPSINSSGLMYQIENENIRFSLLPI 796 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 K +G AR I+ + S DF SR S LN+R E L+ GA+D FGY+R L Sbjct: 797 KHIGMNLARQIVAERERGLYKSFYDFVSRTRS-FLNQRAYEGLIDVGAMDEFGYNRTTLH 855 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLG 960 +L I ++++ + G F +I + K ++ +S+ + + E+ +LG Sbjct: 856 HNLTAILDFSKY---------------DGGLFETDFEIMMMKETL-SSAEKMKREKELLG 899 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY + HP+ + + ++ G + + + + I V ++ + +KG + ++ Sbjct: 900 FYLNSHPIHLMRDQAKEKGWY-FPSDLIHLNVSTITCVGFVEKFREIRDKKGKLMAFMDI 958 Query: 1021 SE 1022 S+ Sbjct: 959 SD 960 >gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga ochracea F0287] gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga ochracea F0287] Length = 1485 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 357/1085 (32%), Positives = 575/1085 (52%), Gaps = 78/1085 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58 F HL H+ +S+L+ S+ +++ A ++ PA+A+TD+ N+ +A F Sbjct: 255 FGHLHNHTQHSILQSTTSIKDLVKITAKEKMPAVALTDSGNMMAAFHFVQAVQGHNKEAE 314 Query: 59 ---------SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 S+ I+PIIGC+ +I +++L + Q +V+L +GY Sbjct: 315 AKNKEAEEKSETPTETLIKPIIGCEFNI-CENHLDRSRQDNGY-----QVVILAKNKQGY 368 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S +G V + E LI+L+GG +G + ++ A++ Sbjct: 369 HNLTKMAS--IASTKGFYYVSRIDKAIVEQYKSDLIVLSGGMNGEVPSKILNIGTKQAKE 426 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228 LL +K+ FG+ Y+ + RH D R ++ +V+ + + + L+ATNN+ +L ++D AH Sbjct: 427 ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSRKYGVKLIATNNTFYLHKKDANAH 486 Query: 229 DVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 D+L+ V T + + R ++Y K +EM ++F D+PEA+ N EI + Sbjct: 487 DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTTAEMKTLFKDIPEAILNIQEIIDKV 546 Query: 282 SFILQVHAPILPRF-----IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQ 335 +LP+F + E D K+ EN LR+ G + + + Sbjct: 547 EPYGLARDILLPKFDIPEEFQVEEDPTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 + R+RLDFEL++I + + GYFLIV DFI A++ N+ VGPGRGS AGS A+ L IT++ Sbjct: 600 EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMNVSVGPGRGSAAGSAVAFCLDITNM 659 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DP+++ LLFERFLNPDR+SMPD DIDF R +VI YV +KYG +VA+IIT+G + AK Sbjct: 660 DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719 Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD-PSVDRL--- 511 +A++D R L +P + +RL L+PN + + + D + + R + P VD L Sbjct: 720 SAIKDTARVLDVPLQESNRLASLVPNGVSSLGKMFSWDDKTLKEKVRSEELPKVDELKRL 779 Query: 512 ------------LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 ++ + +EG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 780 LAGEGEEDSTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618 +E AGL+K DFLGL TLTL++ +++ + Q +++D P DD +TY L T+ Sbjct: 840 NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 GIFQ ES+GM++ + ++P D+IA+ +LYRPGP++ I + RK+G E I P + Sbjct: 900 GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIEPIEYDLPDM 959 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + LKET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK + K K +FIS AS+ Sbjct: 960 EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFISQASE 1019 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 G I+ KFA Y FNKSH+ YA + YQTA++K +YP E++AA ++ M++ Sbjct: 1020 RGHDTQKLEKIWTDWEKFAAYAFNKSHSTCYAWVGYQTAYLKANYPAEYMAAVLSNNMND 1079 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS 857 ++ I F ++ + I+++PP VN F V N I + + A+KGVG I+E Sbjct: 1080 IKTITFFLEECHRMGIKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909 ++P+ S+ D RVD K +N++ ES+ AG D F R Q + L+ Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGVPFLEKAI 1199 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 ++ ++++ + ++F E + + K + + E+ V+G Y SGHPLD Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDIPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259 Query: 970 VYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 +K L+ E + + +A MV Q + + G G+ T + Y Sbjct: 1260 DFKHELQNFCNISLSELQDLQPFINRELTVAGMVADLQHRTAKNGKGYGFFTLEDYDGSY 1319 Query: 1028 EANFF 1032 E F Sbjct: 1320 EFKLF 1324 >gi|325954953|ref|YP_004238613.1| DNA polymerase III subunit alpha [Weeksella virosa DSM 16922] gi|323437571|gb|ADX68035.1| DNA polymerase III, alpha subunit [Weeksella virosa DSM 16922] Length = 1463 Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust. Identities = 366/1091 (33%), Positives = 582/1091 (53%), Gaps = 80/1091 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------ 58 E +P F HL H+ +S+L+ +++ +++ A PA+AITD N+ A F Sbjct: 256 FENAP-FSHLHNHTQFSILQSTITIKDLVKATAKQNMPAVAITDHGNMMGAFHFVDAVYE 314 Query: 59 --------SQKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103 +++ A G I+PI+G + + +++L T + IV L Sbjct: 315 HNQQVEEKNKELEAQGLGPTEKTIKPIVGVEFFV-CENHLDKTKKDNGY-----QIVFLA 368 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 GY L ++ S+ + D RI +++ EGLI+L+G G I Sbjct: 369 KNKVGYHNLAKMASKGNI-DGFYYVPRIDREVIRQ-HKEGLIVLSGNLQGEIPNKILNIG 426 Query: 164 SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSE 222 + AE+ L +K+ FGD Y+ L RH D R +Q ++Q A H + L+ATNN+ ++ + Sbjct: 427 ERQAEEALEWWKEEFGDDFYIELMRHGQEDEDRVNQTLIQFAMKHNVKLIATNNTYYIDK 486 Query: 223 EDYEAHDVLMAV-----AHSTVVSQKDRPRVTP--DHYLKNRSEMVSIFSDLPEALENTV 275 ED AHD+L+ V + + + P ++Y K+ EM ++F D+P A+ N Sbjct: 487 EDSNAHDILLCVRDAEKQSTPIGRGRGFRFGFPNQEYYFKSSEEMKNLFRDIPHAIINIQ 546 Query: 276 EIARRCSFILQVHAPILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 EI + +LP+F I +E + E++ R + A L +GA + Y Sbjct: 547 EIVDKVEEYKLRRDVLLPKFTIPEEFIHAEDEQDGGKRGEN-AYLRFLTYEGA-KRRYET 604 Query: 335 --QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 + +RLDFEL I R + GYFLIV DFI A++ + VGPGRGS AGS AY L I Sbjct: 605 ITSEIEERLDFELTTIERTGYPGYFLIVQDFIAAAREMGVSVGPGRGSAAGSAVAYCLGI 664 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T++DP+ + LLFERFLNPDR+SMPD DIDF + R V+ YV NKYG +VAQIIT+G++ Sbjct: 665 TNLDPIEYDLLFERFLNPDRVSMPDIDIDFDDEGRSLVMDYVINKYGANQVAQIITYGTM 724 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPN---------------DPAHPVSLQAIADDSR 497 AK+++RD R L +P + D++ KLIPN + P L+ + + R Sbjct: 725 AAKSSIRDTARVLDLPLYEADKIAKLIPNMKLSKIFQLDEKVLRNELRPEDLENVLELKR 784 Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557 + + + ++ +Q LEG R+ HA G++I ++ VP+ SDL +TQ Sbjct: 785 LSDG---NDLTAQTIQQAQILEGSVRNTGVHACGVIITPDDITNFVPVTTAKDSDLYLTQ 841 Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKG 616 F+ E AGL+K DFLGLKTLTL++ ++ + R + +D IP DD++TY L Sbjct: 842 FDNSVAEFAGLLKMDFLGLKTLTLIKDTIKLVKLRHDIDIDPDQIPIDDNKTYELFQRGE 901 Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676 T+GIFQ ES GM++ + ++P D+IA+ +LYRPGP++ I + RK G E+I Sbjct: 902 TIGIFQYESPGMQKHMRDLKPTVFADLIAMNALYRPGPMEYIPSFIRRKAGIEEITYDLD 961 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736 + L ET G+ +YQEQVM ++Q L+ +S +ADVLR+AMGKK K +DK K +FI A Sbjct: 962 ACEEYLSETYGITVYQEQVMLLSQKLADFSKGDADVLRKAMGKKQKAVLDKMKPKFIEQA 1021 Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796 + G I I+ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ M Sbjct: 1022 AAKGHDPKILEKIWTDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNM 1081 Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIM- 854 ++++++ F ++ ++ I+++ P VN F V +N I + + A+KGVG+ + I+ Sbjct: 1082 NDIKQVTFFMEECKRMGIKVLNPDVNESISKFNVNENNAIRFGMEAVKGVGSAAVKAIIA 1141 Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL------QSLDNI 908 E + F S+ DF RVD + +N++ +E+L+ AGA D FG+ R + +L+ I Sbjct: 1142 EREKNGDFSSIFDFVKRVDLRVVNKKTIENLILAGAFDQFGFHRGRYFYQEDGTTNLEKI 1201 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKI----TLEKFSVENSSVRFENEQRVLGFYFS 964 KY + + + ++F GT D + +K+S+ + E+ V+G + S Sbjct: 1202 IKYGGNYQAQKNSAQTSLFGGLDGTVEDIVPQLPDCDKWSIVQELYK---EKEVIGMFIS 1258 Query: 965 GHPLDVYK---PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 HPLD YK ++ M + + G + + ++ + + ++ G G TFS Sbjct: 1259 SHPLDEYKDEIKLISNMTLGQLIGREGEVSGRELSMCGIMSNVMHRISKNGKEYGSFTFS 1318 Query: 1022 EPAKEYEANFF 1032 + + Y+ F Sbjct: 1319 DYSDSYDFMIF 1329 >gi|213609772|ref|ZP_03369598.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 603 Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust. Identities = 296/602 (49%), Positives = 411/602 (68%), Gaps = 22/602 (3%) Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ LP+F + Sbjct: 8 RPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM--- 64 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV Sbjct: 65 --TTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIV 122 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+ Sbjct: 123 MEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 182 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 183 DFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVP 242 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP ++ +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 243 PDPGMTLA-KAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKIT 301 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 302 DFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPP 361 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 362 LDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPL 421 Query: 656 DNIVVYN--NRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V N +RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 422 QSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLG 481 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AA Sbjct: 482 GADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAA 541 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 542 YALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHF 601 Query: 829 KV 830 V Sbjct: 602 HV 603 >gi|295136252|ref|YP_003586928.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87] gi|294984267|gb|ADF54732.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87] Length = 1462 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 361/1085 (33%), Positives = 573/1085 (52%), Gaps = 91/1085 (8%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------ 58 L++ P F HL HS +S+L+ +S+ ++++ PA+A+TD N+ A F Sbjct: 257 LDEVP-FAHLHNHSQFSVLQSTISIADLVNAAGEQNMPAVALTDHANMMGAFHFVKEVGA 315 Query: 59 ---------------SQKACAAGIQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVL 101 + A A ++ IIGC+ + + D + N + +V+ Sbjct: 316 YNKNVQAKNEEAEANGEPAQAKELKAIIGCEFFVCENHTDKSRKDNGYQ--------VVM 367 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 L +GY L ++ S+ Y D RI +++ E +I+LTG G + Sbjct: 368 LAKNKKGYHNLAKMSSKAYT-DGFYYVPRIDKEVVKQY-KEDVIVLTGNLYGEVPSKILN 425 Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFL 220 + AE+ LL +K+ FGD LY+ + RH D R +QV ++ + H++ L+ATNN+ + Sbjct: 426 VGEKQAEEALLWWKEEFGDDLYIEIMRHNQEDENRVNQVLIEFSKKHDIKLIATNNTYYW 485 Query: 221 SEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALEN 273 ++D AHD+L+ V +T + + R ++Y K EM ++F DLPEA+ N Sbjct: 486 KKDDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKTAEEMKNLFKDLPEAISN 545 Query: 274 TVEIARRCSFILQVHAPILPRFI--------EKECDDIQKEEENELRNKAVAGLEVRLAQ 325 EI + +LP F E + D ++ E L++ G E R + Sbjct: 546 IKEIVDKIEPFELARDVLLPAFTIPEEFLVEEDKVDGGKRGENAYLKHITYKGAEERYGE 605 Query: 326 GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385 A ++RLDFEL+VI + GYFLIV DFI+ A+ ++ VGPGRGS AGS Sbjct: 606 ITPA-------IKERLDFELSVIENTGYPGYFLIVEDFIREARNLDVSVGPGRGSAAGSA 658 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV KYG +VAQ Sbjct: 659 VAYCLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIGKYGANQVAQ 718 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-SLQAIADDSRFREARLA 504 IIT+G++ AK+++RD R L +P S DR+ KLIPN + + A ++FR + Sbjct: 719 IITYGTMAAKSSIRDTARVLDLPLSDADRIAKLIPNTKLGKIFGMDEKALKAKFRSEEV- 777 Query: 505 DPSVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 S++ LL I++ LEG R+ HA G++I ++ VP+ S Sbjct: 778 -DSINELLNIAEGDDLEAQTVNQARVLEGSVRNTGIHACGVIITPSDITNYVPVSVAKDS 836 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL--SLIPFDDHETY 609 DL VTQF+ +E AGL+K DFLGLKTLTL++ ++ + R +DL P DD ETY Sbjct: 837 DLYVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTIKIVKGRH-NIDLVPDEFPLDDEETY 895 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T+GIFQ ES GM++ ++ ++P +D+IA+ +LYRPGP++ I + RK+G E Sbjct: 896 KLFQRGETVGIFQYESPGMQKHMQALKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDE 955 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +I P ++ LKET G+ +YQEQVM ++Q L+G++ EAD+LR+AMGKK+ + + K Sbjct: 956 EISYDLPDMEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADMLRKAMGKKLVALLAQLK 1015 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI G G + I++ FA Y FNKSH+ YA I+YQTA++K HYP E++A Sbjct: 1016 PKFIGGGEAKGHPTEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMA 1075 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTT 848 A ++ M++++++ F ++ ++ + ++ P VN F V D + + + AIKGVG Sbjct: 1076 AVLSNNMNDIKQVTFFMEECKRMKLNVLGPDVNESYYKFSVNKDYAVRFGMGAIKGVGAG 1135 Query: 849 TARHIMEASADK--PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQS- 904 I+E + P+ S+ D R+D + N++ E+L AG DCF + R Q Sbjct: 1136 AVATIVENRKGEAGPYRSIFDMAKRIDLRAANKKAFENLALAGGFDCFKETHRAQYFHDE 1195 Query: 905 ------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L+ + K+A ++N + ++F + ++ + + E+ V Sbjct: 1196 GDGMSFLEKVVKFAAKFQENENSSQVSLFGEASEVQIPEPSVPPCEEWGTMEKLRREKEV 1255 Query: 959 LGFYFSGHPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 +G Y SGHPLD +K ++ G ++ + I ++ Q + ++ G G Sbjct: 1256 VGIYISGHPLDDFKKEIQYFCNGSLSDFRALEKVVNREISFGGVISDVQHRMSKMGK--G 1313 Query: 1017 WVTFS 1021 W F+ Sbjct: 1314 WAMFT 1318 >gi|168994055|gb|ACA41595.1| DNA polymerase III subunit alpha [Lysinibacillus sphaericus C3-41] Length = 1020 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 360/1028 (35%), Positives = 557/1028 (54%), Gaps = 60/1028 (5%) Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75 +H+S LL+ + L ++ + + A AI +T L+ L F + A I ++G + Sbjct: 1 MHTSADLLKSTIRLEQLIPFLLEQKTQACAIVNTK-LYGLLPFCKAMQQAKIHAVMGLSV 59 Query: 76 DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 ++ D T+P +VL + EGYQ+L+++ S + + G + W Sbjct: 60 NVQWHDT------------TLP-LVLYAQSQEGYQQLLKISSAASIREDGV----LPWKW 102 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-----LLTFKKLFGDRLYVNLQRHR 190 L+ L +L+ S +AE + + LF Y+ + R Sbjct: 103 LEGYAAGCLALLS--------------SDDLAELKDWHGVVSALAHLFQHHFYMGITRPG 148 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 G E+++V+ +PLVA + FL ED+ A++V A+ + Sbjct: 149 GVALANENELVEWCEGQRIPLVAVQSCYFLRPEDHFAYEVARAIDTGDKLGDTMLTAKLQ 208 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 ++ E S F+D PE LE ++ C I+ + +P+F + + E+ Sbjct: 209 GYFAPTAQEWQSWFTDRPEWLETCGQMLASCRAIIPEMSVQMPKF----PVPVGETAESL 264 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 L +A +GLE R Q I GY R+RL +EL +I M F+ YFL+VADF+++AK N Sbjct: 265 LVKEAFSGLEERFNQLDIPYGY-----RERLRYELEIICSMGFADYFLVVADFMRFAKDN 319 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 I GPGRGS AGS+ AY+L IT +DPL + LLFERFLNP+R+S+PD DIDF +R +V Sbjct: 320 RILTGPGRGSSAGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVDSKRHQV 379 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I+YV KYG VAQIITFG+L AKA RDV R ++++ K+IPN P ++LQ Sbjct: 380 IQYVAQKYGKGNVAQIITFGTLSAKAVARDVARVFGFGAEVLEKISKMIPNKPG--ITLQ 437 Query: 491 -AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 A+ + +E D R E++QKLEGL R++STHAAGIVI L VP+ D Sbjct: 438 KALEESYDLQEWLSEDHQHQRWFEVAQKLEGLPRNSSTHAAGIVIAPSSLVNTVPI-EDG 496 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHET 608 + TQ+ M +E +GL+K DFLGL+ LT+L++ G +D IP D +T Sbjct: 497 HEGIYCTQWPMGDVEASGLVKMDFLGLRNLTILEQIRWSIYKAGGPWIDFERIPMHDEKT 556 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + LL + T GIFQLES GM+QAL + P DI+A+ +LYRPGP++ I VY RK GK Sbjct: 557 FQLLQSGDTSGIFQLESEGMKQALRDIHPTQFLDIVAVNALYRPGPMEFIPVYARRKAGK 616 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E +V HP+++P+L+ET GVI+YQEQ+++IA +L+G+S+ +AD+LRRA+ KK ++ +++Q Sbjct: 617 ELVVMPHPVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQ 676 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + F+ GA K G + +A ++EL+ +FADYGF KSHA AY++ISYQ A++K H+P F Sbjct: 677 QVTFVQGALKQGYDQHVATEVYELIVRFADYGFPKSHAVAYSIISYQMAYLKAHFPQSFY 736 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 AA ++ NV+KI++ Q+A+ I PPS+ F V I YSLA IKGV T Sbjct: 737 AALLSNATGNVDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEGIRYSLAGIKGVPHT 796 Query: 849 TARHIMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 I P +L D + ++ +V+ESL++AGALD R L+ ++D Sbjct: 797 FIESINTLRQTNPQALYNLFDLAVALSAQHFKPKVIESLIYAGALDYLEKDRAVLIMTID 856 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 K+A+ + R N+ +I + F ++ + + +E+ LGFY S H Sbjct: 857 AALKHAELL---RPNEDIDISTATEFNFGKPKYMQVDDMPQKE-KLIHEKESLGFYISAH 912 Query: 967 PLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 P+ +P + E + +R G +++ ++ ++ +T+KG ++ +V + Sbjct: 913 PVTQERPYWADVNCTSRE--LKQMRDGTYVKMIGVMEEVKKIRTKKGEQMAFVQLQDEHG 970 Query: 1026 EYEANFFP 1033 A FP Sbjct: 971 SVSATLFP 978 >gi|320093964|ref|ZP_08025792.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral taxon 178 str. F0338] gi|319979098|gb|EFW10613.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral taxon 178 str. F0338] Length = 1179 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 375/1077 (34%), Positives = 574/1077 (53%), Gaps = 73/1077 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL HS YS+L+GA + + A QPAI +TD LF A +F +AG+ Sbjct: 3 SDPFVHLHNHSEYSMLDGAAKTQAMAQEAARLGQPAIGLTDHGYLFGAYDFYTNCVSAGV 62 Query: 68 QPIIGCQLDIDMQ----DNLKMT-------NQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +PIIG + + D K+T + + + + L+ + +G L L Sbjct: 63 KPIIGLEAYVTPGTSRFDRHKVTWGEPWQRSDDVSAGGSYNHLTLIAYSTQGMHNLFRLG 122 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S Q + R L + EGLI+ TG SG + A + Sbjct: 123 SYASTDGQFGKWPRADKELLAKF-HEGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRD 181 Query: 177 LFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG + YV + H G D R SQV+++A PLVATN+S ++ +ED + D L+ Sbjct: 182 IFGPENFYVEVMDH-GIDIERRVHSQVLEIARLMNAPLVATNDSHYVKKEDRKIQDALLC 240 Query: 234 VAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHA 289 + ++ DR + D Y +++ EM ++ +LP A + T+EIA RC + A Sbjct: 241 INSGARINDPDRFKFDGDGYFIRSSQEMRELWRELPGACDATLEIAERCDVRFTTTKEGA 300 Query: 290 PILPRFIEKECDD----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 +P F E +D KE E L ++ G+ D R++ +E Sbjct: 301 NYMPDFPVPEGEDKTSWFVKEVERGLNDRFPGGI--------------PDDVREQAQYEE 346 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI M F GYFL VAD+I WAK I VGPGRGSGAGS+ AYA+ IT+++PL L+FE Sbjct: 347 DVIISMGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYAMKITELNPLEHGLIFE 406 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D R L Sbjct: 407 RFLNPERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARIL 466 Query: 466 QMPYSQVDRLCKLIPNDPA---HPVSLQAIAD--DSRFREAR------LADPSVDRLLEI 514 + ++L K +P PA +S+ I D D R+ EA +P +++ Sbjct: 467 GKDFKMGEQLTKALP--PAIMGKDISVAGIFDQGDKRYGEAAEFRKFYEDNPDTHEVVQY 524 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + LEGL R HA +++ L+ ++P+ + + +TQF+ E GL+K DFL Sbjct: 525 ALGLEGLTRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFL 584 Query: 575 GLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ +L+ +A G + DL I FDD +TY LL TLG+FQL+ GMR L+ Sbjct: 585 GLRNLTVVSDALENIAINGKEDPDLDHIRFDDAKTYELLGRGDTLGVFQLDGGGMRDLLK 644 Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQG 687 M+PD EDI A+ +LYRPGP+ ++ Y RKNG+++I IHP L +P+ L T G Sbjct: 645 LMKPDNFEDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEEILGTTFG 704 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVMQIAQ L+GY+L +AD+LR+AMGKK KE +D+Q + F G NG S+ Sbjct: 705 LIVYQEQVMQIAQKLAGYTLGQADILRKAMGKKKKEVLDQQFKGFRQGMVDNGYSEESIK 764 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +++++ F+ Y FNK+H+AAY ++SY TA++K +YP E++AA +T DN ++ + Sbjct: 765 ALWDVVVPFSAYAFNKAHSAAYGLVSYWTAFLKANYPTEYMAALLTSTKDNKDRRALYLA 824 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLE 866 + R +I ++PP VN +F I + L+A++ VG I+ A +K F S + Sbjct: 825 ECRHMDITVLPPDVNASMGNFAPDGEAIRFGLSAVQNVGGPVVEAIVGAREEKGRFASFQ 884 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF +V N+R ++SL+ AGA D G++R LL D V++N ++ Sbjct: 885 DFLDKVPQVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAVIDVKRNEAIGQFDL 944 Query: 927 FA---HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 F G S I + + + E+ +LG Y S HPL + L + + Y Sbjct: 945 FGGLDDGAGGSSLAIDIPDLPEFDRKQKLAAEREMLGLYVSDHPLRGLEGALARH--QDY 1002 Query: 984 EESVATIRGNN-------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E +A + G+ +++A +V K T++G+ T + + E FFP Sbjct: 1003 E--IAQVVGSEGAMADRVVKIAGLVSGVTTKVTKQGNAWAIATIEDLSGSVEVLFFP 1057 >gi|150024446|ref|YP_001295272.1| DNA polymerase III, alpha and epsilon subunits [Flavobacterium psychrophilum JIP02/86] gi|149770987|emb|CAL42454.1| Probable DNA polymerase III, alpha and epsilon subunits [Flavobacterium psychrophilum JIP02/86] Length = 1508 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 365/1087 (33%), Positives = 579/1087 (53%), Gaps = 86/1087 (7%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-- 58 +TQ L + F HL H+ +S+L+ +S+ ++ A ++ A+A+TD NL A F Sbjct: 252 ITQNLANA-KFAHLHNHTQFSVLQSTISVAKLVAAAAKNKMSAVAMTDHANLMGAFHFVR 310 Query: 59 -------------------SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99 ++A ++PI+GC+ + DN K ++ + + Sbjct: 311 DVLNQNKTAAKKNATAIENGEEATEVEMKPIVGCEFFV--CDNHKDKSKKDNGY----QV 364 Query: 100 VLLVSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRA 158 V L +GY L ++ S Y +G V RI + +++ E +I+L+G G I Sbjct: 365 VFLAKNKKGYHNLAKMSSIAYT--EGFYYVPRIDRNVIEQY-KEDIIVLSGNLYGEIPSK 421 Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNS 217 AE+ LL +K F D Y+ L RH D R +Q ++ A HE+ L+ATNN+ Sbjct: 422 ILNLGENQAEEALLWWKSKFKDDFYLELMRHNQEDENRVNQTLISFANKHEVKLIATNNT 481 Query: 218 LFLSEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEA 270 ++S++D AHD+L+ V +T + + R ++Y K+ EM +FSDLP+A Sbjct: 482 FYISKDDANAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSGEEMKQLFSDLPDA 541 Query: 271 LENTVEIARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEVR 322 + N EI + +LP+F E + D + E L + G + R Sbjct: 542 IVNIQEIVDKIEIYSLYRDVLLPKFEIPTEFLVPEDQTDGGVRGENKYLHHLTYQGAKRR 601 Query: 323 LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382 A+ + +R+DFEL I + GYFLIV DFI A+K ++ VGPGRGS A Sbjct: 602 YAE-------ITPEIEERIDFELLTIQNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAA 654 Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442 GSV AY L IT+IDPL ++LLFERFLNPDR+S+PD DIDF + R +V+ YV KYG ++ Sbjct: 655 GSVVAYCLGITNIDPLLYNLLFERFLNPDRVSLPDIDIDFDDEGRSKVMDYVIEKYGKKQ 714 Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502 VAQIIT+G++ AK+A+RD R L +P + D++ KL+P +L +D+ + Sbjct: 715 VAQIITYGTMAAKSAIRDTARVLDLPLFEADKIAKLLPGMLPGKWNLARFMNDTEVEIKK 774 Query: 503 LADPS-VDRLLEI----------------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + P DR+ E+ +Q LEG R+ HA G++I ++ VP+ Sbjct: 775 VLRPEDFDRMKELILLSKEEDLGGETIQQAQILEGNLRNTGIHACGVIITPSDITNFVPV 834 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 SDL VTQF+ E AGL+K DFLGLKTLTL++ ++ + R G+++D P D Sbjct: 835 TTAKDSDLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIQLDPDTFPID 894 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY L T+GIFQ ES+GM++ ++ ++P D+IA+ +LYRPGPI I + R Sbjct: 895 DVKTYELFQRGETVGIFQYESAGMQKYMKELKPTVFNDLIAMNALYRPGPIAYIPSFIKR 954 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KNG+E I + +LK+T G+ +YQEQVM ++Q L+ +S +ADVLR+AMGKK ++ Sbjct: 955 KNGEEPIEYDLEACEELLKDTYGITVYQEQVMLLSQRLADFSKGDADVLRKAMGKKQRDV 1014 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +DK K +F+S A G ++ I++ FA+Y FNKSH+ YA I+YQTA++K +YP Sbjct: 1015 LDKMKPKFVSQAVAKGHAEDKLEKIWKDWEAFAEYAFNKSHSTCYAWIAYQTAYLKANYP 1074 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 E++AA ++ M +++++ F ++ ++ + ++ P VN F V D+ + + + A+K Sbjct: 1075 AEYMAAVLSNNMSDIKQVSFFMEECKRMGLAVLGPDVNESFYKFTVNDDYAVRFGIGAVK 1134 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902 GVG I+E D + S+ D RVD + N++ +E+L+ AG DCF R Q Sbjct: 1135 GVGMGAVNTIVENRKDGSYKSIFDLAKRVDQRAANKKAIENLILAGGFDCFENTHRAQYF 1194 Query: 903 QS-LDNIQKYAQWV------EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 + DN+ Y + + ++N + ++F + + N+ + E Sbjct: 1195 HTDGDNLTFYEKAIRFGAKFQENENSSQVSLFGDTSDVQISEPLIPPCEEWNTMEKLAKE 1254 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 + V+G Y SGHPLD YK ++ E +++ G N+ +V + Q + + G Sbjct: 1255 KEVVGIYISGHPLDDYKFEMKYFCNNKLESLKNLEQFVGKNLAFGGIVTNVQHRTAKNGK 1314 Query: 1014 RIGWVTF 1020 GW TF Sbjct: 1315 --GWATF 1319 >gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga sputigena Capno] gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga sputigena Capno] Length = 1485 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 363/1086 (33%), Positives = 586/1086 (53%), Gaps = 80/1086 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 F HL H+ +S+L+ S+ +++ A ++ PA+A+TD+ N+ +A F Q Sbjct: 255 FAHLHNHTQHSILQSTTSIKDLVKVTAKEKMPAVALTDSGNMMAAFHFVQAVQGHNKEAE 314 Query: 61 ----KACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 +A G I+PIIGC+ +I +++L T Q +V+L +GY Sbjct: 315 AKNKEAEEKGETPTETLIKPIIGCEFNI-CENHLDKTRQDNGY-----QVVILAKNKQGY 368 Query: 110 QRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 L ++ S +G V RI + +++ ++ L++L+GG +G I ++ AE Sbjct: 369 HNLTKMAS--IASTKGFYYVPRIDKTIVEQYKSD-LMVLSGGMNGEIPSKILNIGTKQAE 425 Query: 169 KRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEA 227 + LL +K+ FG+ Y+ + RH D R ++ +V+ + + + L+ATNN+ +L ++D A Sbjct: 426 EALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSKKYGVKLIATNNTFYLHKKDANA 485 Query: 228 HDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 HD+L+ V T + + R ++Y K +EM ++F D+PEA+ N EI + Sbjct: 486 HDILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTSAEMKALFKDIPEAILNIQEIIDK 545 Query: 281 CSFILQVHAPILPRF-IEKE---CDDI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 +LP+F I +E DD+ +K E N LR+ G + + + Sbjct: 546 VEPYGLARDILLPKFDIPEEFQVSDDLTGKKGENNYLRHLTYEGAKRKYPE-------IT 598 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 + R+RLDFEL++I + + GYFLIV DFI A++ + VGPGRGS AGS A+ L IT+ Sbjct: 599 DEVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMGVSVGPGRGSAAGSAVAFCLDITN 658 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 +DP+++ LLFERFLNPDR+SMPD DIDF R +VI YV +KYG +VA+IIT+G + A Sbjct: 659 MDPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAA 718 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR----LADPSVDR 510 K+A++D R L +P + +RL L+PN + + D + + R L + R Sbjct: 719 KSAIKDTARVLDVPLQESNRLAGLVPNGVSSLGKMFGWDDKTLKEKVRSEELLKVDELKR 778 Query: 511 LL------EISQKL------EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558 LL E +Q + EG R+ HA G++I ++ VP+ SDL VTQF Sbjct: 779 LLAGEGEEESTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQF 838 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617 + +E AGL+K DFLGL TLTL++ +++ + Q +++D P DD +TY L T Sbjct: 839 DNSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGET 898 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +GIFQ ES+GM++ + ++P D+IA+ +LYRPGP++ I + RK+G E I P Sbjct: 899 VGIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIEPIEYDLPD 958 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LKET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK + K K +FI+ AS Sbjct: 959 MEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFITQAS 1018 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 + G I+ KFA Y FNKSH+ YA + YQTA++K +YP E++AA ++ M+ Sbjct: 1019 EKGHDAQKLEKIWADWEKFAAYAFNKSHSTCYAWVGYQTAFLKANYPAEYMAAVLSNNMN 1078 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA 856 +++ I F ++ + I+++PP VN F V N I + + A+KGVG I+E Sbjct: 1079 DIKTITFFLEECHRMGIKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQ 1138 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908 ++P+ S+ D RVD K +N++ ES+ AG D F R Q + L+ Sbjct: 1139 RQERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGIPFLEKA 1198 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 ++ ++++ + ++F E + + K + + E+ V+G Y SGHPL Sbjct: 1199 IRFGTKYQESKNSAQMSLFGGESEVDVPEPAVPKCETWGNLEQLRREKEVVGIYISGHPL 1258 Query: 969 DVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D +K L + + + + +A MV Q + ++ G G++T + Sbjct: 1259 DDFKHELHNFCNISLSQLQDLNSFINRELTVAGMVADLQHRTSKNGKGFGFLTLEDYDGS 1318 Query: 1027 YEANFF 1032 YE F Sbjct: 1319 YEFKLF 1324 >gi|193212527|ref|YP_001998480.1| DNA polymerase III subunit alpha [Chlorobaculum parvum NCIB 8327] gi|193086004|gb|ACF11280.1| DNA polymerase III, alpha subunit [Chlorobaculum parvum NCIB 8327] Length = 1190 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 356/1017 (35%), Positives = 558/1017 (54%), Gaps = 80/1017 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YS+ + + +A+TD +F+ E +A A ++ I Sbjct: 11 FVHLHTHTHYSMQSSPIFPGELFAACKKQGMTTVAVTDYGAMFNMPELFGQAAKAEVKLI 70 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ L T+ T P +++LL+ GY+ + ++SR Sbjct: 71 MGSEI------YLAGTDAHDTGRPA--TLILLIRNDIGYRNMCVILSRAARDGFSNGLPH 122 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + S L+E +EGL L+ SG I R + A K ++ LFG+ Y+ LQ+H Sbjct: 123 VDRSVLKEC-SEGLTCLSAAHSGQIGRTLLAGNEAEAAKLAEQYRSLFGEHFYLELQKHG 181 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 Y+ ++LA +PLVATNN +L D + ++A ++ ++ + Sbjct: 182 VPYEELLVPATIRLAEQLGIPLVATNNVHYLDRRDSGCYRAMIANRTKERLNSQNL-QCL 240 Query: 250 PDH--YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P H Y K+ SEM ++F + + L NTV+IA CS+ P LP+F E D E Sbjct: 241 PGHENYFKSASEMSALFDNSHDELSNTVKIAEACSYKFVDQDPHLPKFPLPEGFD---SE 297 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR+ G + + G ++ ++R++ EL VI +M +S YFLIV+D I + Sbjct: 298 KGYLRHLTWEGARNKYG---VEDGAIPEEVKERIELELGVIEKMGYSAYFLIVSDLIAAS 354 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R+SMPD DIDF + Sbjct: 355 REMGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERISMPDIDIDFTPVGK 414 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +V+ Y KYG E VA+++ G+L AKAA+RD GR L +P VD+L KL+P+ P + Sbjct: 415 QKVLDYTVQKYGAESVAKVVAIGTLGAKAAIRDAGRVLDVPLKAVDQLAKLVPSKPGTSL 474 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 A + + +DP +L++ ++ +EG R+ S HA +VI D L + VP+Y Sbjct: 475 K-DAFKEVKELKRLVDSDPQYQQLMQYARAMEGRARNVSMHAGAVVITDGALEEQVPLYV 533 Query: 548 DVRSDLP--------------------------VTQFNMKWIEKAGLIKFDFLGLKTLTL 581 + + VTQF+ IE+AGL+K D+LGL+TL + Sbjct: 534 SNKIETEERKYADEFDQNDIDGTKAESSDEKQVVTQFDKNCIEQAGLLKIDYLGLETLAV 593 Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++L + +R G+ ++L +P DD +T+ + GIFQ ESSGM+ + +QP I Sbjct: 594 IDETLRLIKKRHGIDIELEKVPMDDRQTFRIFQEGKMAGIFQFESSGMQSYMTRLQPTTI 653 Query: 641 EDIIALVSLYRPGPIDNIV--------VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 DIIA+ +LYRPG ++ ++ ++ +RK+G+E+I +HP+++ +LKET GVI+YQ Sbjct: 654 GDIIAMSALYRPGALNAVIDEHRNAVDLFVDRKHGREEIDYMHPMLEEILKETYGVIVYQ 713 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQI+Q++ +SL +AD LR+AMGKK M K KE F+ GA +++ +A IF+L Sbjct: 714 EQVMQISQVMGRFSLGKADNLRKAMGKKNPALMQKFKEEFVQGAVSIDVNEALATRIFDL 773 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 +A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A + E+ + E++K +A+ F Sbjct: 774 MAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAILNSEIGDTERMKHLTDEAKGF 833 Query: 813 NIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASA---DKPFDSL 865 I +PPS+N F V +++ I L+AIK VG AR ++ A KPF +L Sbjct: 834 GIFTLPPSINQSDALFSVDEHKGKPCIRVGLSAIKQVG-NGARAVVAARLRRDGKPFANL 892 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 D + VD + +NR+ LE L+ AGALD +R +LL ++D K+ Q K T Sbjct: 893 FDLTASVDLRAMNRKALECLIQAGALDEIDPNRGKLLANVDKAIKFGQIQNKAVT----- 947 Query: 926 IFAHEKGTFSDKITLEKFSV-----ENS-----SVRFENEQRVLGFYFSGHPLDVYK 972 + G F+D + E+ + +N S + ++E+R++GFY S HPLD Y+ Sbjct: 948 --LGQGGFFNDDFSNEQAGIYYPELDNGEPMPESEKLQHEKRLVGFYLSHHPLDRYR 1002 >gi|301308097|ref|ZP_07214051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3] gi|300833567|gb|EFK64183.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3] Length = 1267 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 370/1124 (32%), Positives = 588/1124 (52%), Gaps = 122/1124 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61 F+HL VH+ YSLL+G S++ ++DK D AIA+TD +F EF K Sbjct: 4 FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 63 Query: 62 ------------------------------------ACAAGIQPIIGCQLDIDMQDNLKM 85 A A+ +PIIGC+ N + Sbjct: 64 GIIKDSEKELKPLLTKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYC--ARNGRH 121 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + + +++L GY+ LI++VS + +G L E + LI Sbjct: 122 SKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWT--EGFYGRPRIDKELLEKYHKDLI 179 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV----- 200 + + G I + AE+ + FK LFG+ Y+ +QRH +D + + Sbjct: 180 ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239 Query: 201 ------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 ++LA+ H + L+ATN+ F++ +D EAHD L+ ++ + R R + ++ Sbjct: 240 EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 299 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI------------------ 296 K +EM +IF+D+PEAL NT+EIA + F PI+P F Sbjct: 300 KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359 Query: 297 --------EKECDDIQKEEENELRNKAVAGLE----VRLAQGAIAKGYH----------- 333 ++ + + EEE + K + G + ++L +AK + Sbjct: 360 DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392 + ++RL+FEL+++ M F GYFLIV DFI+ A++ + VGPGRGS AGS AY L I Sbjct: 420 NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGI 479 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD D DF D R EV+R+V KYG ERVA IIT+G++ Sbjct: 480 TKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTM 539 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSV 508 K+A++DV R ++P S+ +RL KL+P+ + AI +EA DP Sbjct: 540 ATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAANGNDPLA 599 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 L+ +Q LEG R+ HA G++IG +S +VP+ +D ++ VTQ+ IE Sbjct: 600 RDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIE 659 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 + GLIK DFLGLKTL++++++++ + G +D+ I +D +TY L T G FQ Sbjct: 660 ETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKTTGTFQF 719 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L+ +QP ED+IA+ +LYRPGP+D I + RK GKE+I P+++ LK Sbjct: 720 ESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLK 779 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+ E+M+ K +F++G NG + Sbjct: 780 DTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQANGYKE 839 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 I+ KFA Y FNKSHA Y+ ++YQTA++K ++P E++AA ++ + N+ I Sbjct: 840 ETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLSNITDIT 899 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKP 861 KF + + IQ++ P VN + F V N+ I + L A+KGVG + ++I+E + P Sbjct: 900 KFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEERKKNGP 959 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQW 914 + S+ DF RV+ N++ +ES+ AGA D FG R Q LD + +Y Sbjct: 960 YKSIFDFVERVNLTACNKKNIESMALAGAFDNFGILREQFFTDSGKGELFLDTLVRYGNK 1019 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 + +++ ++F + K + + + R E+ ++G Y S HPLD Y+ I Sbjct: 1020 YQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPLDEYRII 1079 Query: 975 LRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 L+ + G E T++G + L +V ++ T+ G G Sbjct: 1080 LKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYG 1123 >gi|255012661|ref|ZP_05284787.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_7] Length = 1281 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 370/1124 (32%), Positives = 588/1124 (52%), Gaps = 122/1124 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61 F+HL VH+ YSLL+G S++ ++DK D AIA+TD +F EF K Sbjct: 18 FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 77 Query: 62 ------------------------------------ACAAGIQPIIGCQLDIDMQDNLKM 85 A A+ +PIIGC+ N + Sbjct: 78 GIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYC--ARNGRH 135 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + + +++L GY+ LI++VS + +G L E E LI Sbjct: 136 SKLASQDDRSGWHLIVLAKNKNGYKNLIKMVSLSWT--EGFYGRPRIDKELLEKYHEDLI 193 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV----- 200 + + G I + AE+ + FK LFG+ Y+ +QRH +D + + Sbjct: 194 ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 253 Query: 201 ------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 ++LA+ + + L+ATN+ F++ +D EAHD L+ ++ + R R + ++ Sbjct: 254 EVNKVLIELAHKYNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 313 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI------------------ 296 K +EM +IF+D+PEAL NT+EIA + F PI+P F Sbjct: 314 KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 373 Query: 297 --------EKECDDIQKEEENELRNKAVAGLE----VRLAQGAIAKGYH----------- 333 ++ + + EEE + K + G + ++L +AK + Sbjct: 374 DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 433 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392 + ++RL+FEL+++ M F GYFLIV DFI+ A++ + VGPGRGS AGS AY L I Sbjct: 434 NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAVAYCLGI 493 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD D DF D R EV+R+V KYG ERVA IIT+G++ Sbjct: 494 TKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHIITYGTM 553 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSV 508 K+A++DV R ++P S+ +RL KL+P+ + AI +EA DP Sbjct: 554 ATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAANGNDPLA 613 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 L+ +Q LEG R+ HA G++IG +S +VP+ +D ++ VTQ+ IE Sbjct: 614 RDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQYEGSVIE 673 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 + GLIK DFLGLKTL++++++++ + G +D+ I +D +TY L T G FQ Sbjct: 674 ETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKTTGTFQF 733 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L+ +QP ED+IA+ +LYRPGP+D I + RK GKE+I P+++ LK Sbjct: 734 ESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPVMERYLK 793 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+ E+M+ K +F++G NG + Sbjct: 794 DTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQANGYKE 853 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 I+ KFA Y FNKSHA Y+ ++YQTA++K ++P E++AA ++ + N+ I Sbjct: 854 ETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLSNITDIT 913 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKP 861 KF + + IQ++ P VN + F V N+ I + L A+KGVG + ++I+E + P Sbjct: 914 KFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEERKKNGP 973 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQW 914 + S+ DF RV+ N++ +ES+ AGA D FG R Q LD + +Y Sbjct: 974 YKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGELFLDTLVRYGNK 1033 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 + +++ ++F + K + + + R E+ ++G Y S HPLD Y+ I Sbjct: 1034 YQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPLDEYRII 1093 Query: 975 LRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 L+ + G E T++G + L +V ++ T+ G G Sbjct: 1094 LKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYG 1137 >gi|257463849|ref|ZP_05628236.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|317061383|ref|ZP_07925868.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|313687059|gb|EFS23894.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] Length = 857 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 329/846 (38%), Positives = 525/846 (62%), Gaps = 31/846 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+G + + + + A + AIAITD N+F ALEF QKA G++ I Sbjct: 4 FVHLHLHTEYSLLDGVGKIEDYMKRAKALRMKAIAITDHGNMFGALEFYQKAQKYGLKAI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ + + + F ++LL EGYQ L+ L S YL + R Sbjct: 64 IGVEVYLS---EFPLEEKKGRNF----HLILLAENYEGYQNLMRLSSLAYL-EGFYYKPR 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFG-DRLYVNLQR 188 I L++ ++G++ L+ +G I + + E + ++ +FG + Y+ +Q Sbjct: 116 IDKELLRKY-SKGILALSACLNGEIASYILEGAEESKIEACIREYQDIFGKENFYLEVQA 174 Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + ++ + L ++PLVATN++ ++++ ++ DV++ + + +S + R R Sbjct: 175 HEEKEQRQVNEALYALGKKLQIPLVATNDTHYVNKGEHLLQDVILCIQTGSHISDEKRMR 234 Query: 248 V-TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + D YLK+ EM ++ + EA++N+VEIA+RC + +H P + E I Sbjct: 235 IEMQDLYLKSYEEMYAMLGEQYAEAIQNSVEIAKRCQLWIPMHEFQFPDYTLPE--GIAS 292 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 EE L+ GL R +G + +R ++EL++I +M ++GYF++V DFI Sbjct: 293 LEEY-LKKLTYEGLAKRYPRGL------DEAIVERAEYELSIINKMGYAGYFVVVWDFIA 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+K IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DID CQ+ Sbjct: 346 FARKKKIPIGPGRGSAAGSLVAYALEITQLDPLEYHLIFERFLNPERISMPDIDIDICQE 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR E+I YV KYG ++VAQI TFG+L+A+AA+RDVGR +++ S++D+ K IP Sbjct: 406 RRQEIIDYVVQKYGQDKVAQISTFGTLKARAAIRDVGRVMEVELSKIDKAAKCIP----M 461 Query: 486 PVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 SL+ + +++ + D + ++ + ++E RH STHAAG++I + L++ VP Sbjct: 462 FASLREVLEENIDLKTMYQQDVELKNVINTAIRIENKVRHISTHAAGVLITKKSLTESVP 521 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603 +Y D ++ + TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ + K+ L+ I Sbjct: 522 LYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTHKKIVLAEISL 581 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 D + Y +L+ + G+FQ+ES G+R L+ ++P+ DIIAL+SLYRPGP+ + +V + Sbjct: 582 QDEKVYDMLSKGDSFGVFQMESRGLRSILKRLKPNSFGDIIALLSLYRPGPLGSGMVDDF 641 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+GK+ IV H + +L+ET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK Sbjct: 642 IERKHGKKAIVYPHVSLQEVLEETYGVILYQEQVMKIANIMADYSLGEADLLRRAMGKKN 701 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E M + + +FI + K G + A IF+L+ KFA YGFNKSH+AAYA+I+Y TA+ K+ Sbjct: 702 VEIMHENRSKFIERSIKKGYEREKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWTAYFKS 761 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP F AA ++ E+ +++KI + DA+ ++I P V P F V +++I ++L+A Sbjct: 762 HYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIQTPDVQFPSSRFVVKEDKILFALSA 821 Query: 842 IKGVGT 847 IK VGT Sbjct: 822 IKNVGT 827 >gi|76579902|gb|ABA49377.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei 1710b] Length = 1253 Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust. Identities = 317/753 (42%), Positives = 467/753 (62%), Gaps = 25/753 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A AGI+ Sbjct: 516 PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIK 575 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC + I D+ ++ ++LLV GY L EL+S+ +L +Q + Sbjct: 576 PIAGCDVWITNHDDRDKPSR----------LLLLVKDKRGYLNLCELLSKAWLTNQYRGR 625 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + SWL+ EGL+ L+G G I A + A + + ++F Y+ LQR Sbjct: 626 AELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQR 685 Query: 189 HR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 + G + Y + Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ R Sbjct: 686 YGQPGAEAYIQ-QAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQ 744 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + + Sbjct: 745 KRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSL-- 802 Query: 306 EEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLIVAD Sbjct: 803 --DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVAD 860 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDF Sbjct: 861 FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF 920 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLIP Sbjct: 921 CQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFK 980 Query: 483 PAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P V++ A+ ++ +E + V +LL+++Q++EGL R+ HA G++I L+ Sbjct: 981 PGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTD 1040 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLAQRGVKVDL 598 P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ + L L Sbjct: 1041 FCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSL 1100 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+D I Sbjct: 1101 AQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLI 1160 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMG Sbjct: 1161 PSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMG 1220 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 KK EEM K +E F GA+KNG+++ + IF+ Sbjct: 1221 KKKPEEMAKHREIFAEGAAKNGLTREKSDEIFD 1253 >gi|254495210|ref|ZP_05108134.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152] gi|85819562|gb|EAQ40719.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152] Length = 1445 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 359/1056 (33%), Positives = 569/1056 (53%), Gaps = 52/1056 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQ 60 K F HL H+ +S+L+ + + NI+ A D PA+A+TDT N+ ++ F Sbjct: 256 KDVQFAHLHNHTQFSVLQSTMQIGNIVKAAAKDNMPAVAMTDTANMMASFHFVSAVLNHN 315 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 K ++PIIGC+ +I ++ K +Q + +VLL GY L ++ S + Sbjct: 316 KTAETPMKPIIGCEFNI--CEDHKNKSQKDNGY----QVVLLAKNKNGYHNLAKM-SSIA 368 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 +D RI +++ + +I+LTG G + + AE+ LL +K+ F D Sbjct: 369 FVDGFYYVPRIDKEIIKKY-KDDIIVLTGNLYGEVPSKILNLGEKQAEEALLWWKEQFQD 427 Query: 181 RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ L RH D +++ + H++ +VATNN+ +L ++D AHD+L+ V Sbjct: 428 DFYIELMRHNQQDENIVNETLLKFSKKHDIKIVATNNTFYLEKKDANAHDILLCVKDGEK 487 Query: 240 -VSQKDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + K + R ++Y K+ EM ++F+DLPEA+ N EI + +L Sbjct: 488 QATPKGKGRGYRYGLPNEEYYFKSSDEMKTLFADLPEAIINIQEIVDKIEIFTLARDVLL 547 Query: 293 PRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 P F I E D + E+ R + + I G + ++RLDFEL VI + Sbjct: 548 PAFDIPDEFKDARDNEDGGKRGENNFLKHLTFEGAKIRYGEITPEIKERLDFELEVIEKT 607 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 + GYFLIV DFI+ A+K ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFLNP+ Sbjct: 608 GYPGYFLIVEDFIREARKMDVAVGPGRGSAAGSVVAYCLWITNIDPIKYDLLFERFLNPE 667 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + R V+ YV +KYG +VAQIIT+G++ AK+++RD R L +P + Sbjct: 668 RVSMPDIDIDFDDEGRGRVMDYVIDKYGANQVAQIITYGTMAAKSSIRDTARVLDLPLFE 727 Query: 472 VDRLCKLIP---------NDPAHPVSLQAIADDSR--FREARLADPSVDRLLEISQK--- 517 DR+ KLIP +DP + + + + E R D + E K Sbjct: 728 ADRIAKLIPGIKLKNIFGDDPKSKGKVDGLRAEEKQLVEELRTMSSGSDLVSETINKATI 787 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEG R+ HA G++I ++ VP+ SD+ VTQF+ +E AGL+K DFLGLK Sbjct: 788 LEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDMYVTQFDNSVVESAGLLKMDFLGLK 847 Query: 578 TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 TLTL++ ++ + A+ GV++D P DD +TY L T+GIFQ ES GM++ + ++ Sbjct: 848 TLTLIKDTVKIVKAKHGVELDPENFPLDDEKTYELFQRGETVGIFQYESPGMQKHMRSLK 907 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 P D+IA+ +LYRPGP++ I + NRK+G E I P ++ L ET G+ +YQEQVM Sbjct: 908 PTVFADLIAMNALYRPGPMEYIPSFINRKHGTEDIEYDLPAMEEYLAETYGITVYQEQVM 967 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 ++Q L+ ++ EADVLR+AMGKK +DK K +FI A KNG + I++ F Sbjct: 968 LLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQAGKNGHDEEKLEKIWKDWEAF 1027 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A Y FNKSH+ YA I+YQTA++K HYP E++A+ ++ M +++ + F ++ ++ +++ Sbjct: 1028 ASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMKDIKAVSFFMEECKRMGLEV 1087 Query: 817 MPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDS 874 + P +N + F V + + + +AA+KGVG R I+ E + + S+ D RVD Sbjct: 1088 LGPDINESYLKFSVNQEGAVRFGMAAVKGVGAAAVRAIIAERKENGNYSSIFDLAKRVDL 1147 Query: 875 KKLNRRVLESLVFAGALDCFGYS-RMQLLQS-------LDNIQKYAQWVEKNRTNKHENI 926 + N++ +SL+ AGA D F + R Q + L+ K+ ++N + ++ Sbjct: 1148 RAANKKSFDSLIKAGAFDSFSDTHRAQYFATDEKGITFLERAMKFGSKYQENENSAQVSM 1207 Query: 927 FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP--ILRKMGIKGYE 984 F + + + + E+ V+G Y S HPLD +K I +K ++ Sbjct: 1208 FGETSTVQFPEPDIPECETWGTMELLSQEKEVIGIYISAHPLDDFKNEMIFCNASLKYFK 1267 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 + G N+ A ++ Q + ++ G GW +F Sbjct: 1268 GDLNKYVGMNLSFAGIITEVQHRVSKAGK--GWASF 1301 >gi|94984363|ref|YP_603727.1| DNA polymerase III, alpha subunit [Deinococcus geothermalis DSM 11300] gi|94554644|gb|ABF44558.1| DNA polymerase III, alpha subunit [Deinococcus geothermalis DSM 11300] Length = 1322 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 315/721 (43%), Positives = 447/721 (61%), Gaps = 37/721 (5%) Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 HA +R ++EL+VI M F YFLIVAD+I WAK I VGPGRGSGAGS+ AYA+ I Sbjct: 464 HALTVLRRAEYELSVINNMGFPDYFLIVADYIGWAKDQGISVGPGRGSGAGSLVAYAIRI 523 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T++DPL F LLFERFLNPDR+SMPDFDIDF RR EVI YVQ KYG ++VAQI TFG++ Sbjct: 524 TNLDPLEFELLFERFLNPDRISMPDFDIDFNDARRGEVIGYVQGKYGDDKVAQIATFGTM 583 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-----------QAIADDSRFREA 501 +KA L+DV R + + Y++VD++ KLIP SL Q +A+D++ REA Sbjct: 584 ASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIQQMLAEDAQLREA 643 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 E +QKLEGL RHAS HAAG+VIG L+ LVP+ RD + V Q++MK Sbjct: 644 ----------YEFAQKLEGLTRHASVHAAGVVIGRSQLTDLVPVMRDTSGEGMVCQYDMK 693 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGI 620 +E GLIK DFLGL+TL+ L ++ + + +GV++D IPFDD +T+ LL+ T G+ Sbjct: 694 AVEDIGLIKMDFLGLRTLSFLDEAKRIMRESKGVEIDFDAIPFDDEKTFELLSRGDTKGV 753 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-----SIH 675 FQLE +G+ A ++P + DIIAL +LYRPGP++NI Y R +G E + Sbjct: 754 FQLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGAEPVTYDEFPHSA 813 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 ++ +L ET G+ +YQEQ+MQIA ++GYSL AD+LRRAMGKK EEM +Q++ F+ G Sbjct: 814 KWLEKILAETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDAEEMKRQRQLFVEG 873 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A KNG+ K +F+LL FA+YGFNKSH+AAY VI+YQTAW+K +YPVEF+AA +T+E Sbjct: 874 AEKNGVPKEEGNRLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAALLTVE 933 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855 + +K+ ++ DAR+ N++++PP +N DF V I + L AIKG+G + I+E Sbjct: 934 RRDSDKVAEYVSDARKMNVRVLPPDINRSSADFAVHGEEILFGLYAIKGLGEGAVQKILE 993 Query: 856 A-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914 + PF SL DFCSR+ K NR+ +ESL+ +GA D FG R QL++SL+ +AQ Sbjct: 994 EREKNGPFRSLADFCSRLGHKVCNRKAMESLIKSGAFDGFG-ERHQLMESLEEAMAWAQG 1052 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 + + +F + K+ + R E+ LG Y SGHPL+ ++ + Sbjct: 1053 AAALAQSGMDALFGMAETAPEPKLK-AGVAPYTDLQRLAIEKEALGLYISGHPLEQHEGL 1111 Query: 975 -----LRKMGIKGYEESVATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 R + + ++ G ++ LA M+ + +K T+ G + ++ + + Sbjct: 1112 REAASCRISDLDTWFQAQNVAPGKRVKAVLAGMIENVVKKPTKSGGMMARFILADESGQT 1171 Query: 1028 E 1028 E Sbjct: 1172 E 1172 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 139/298 (46%), Gaps = 18/298 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL H+ YSLL+GA L ++L K PA A+TD N+ A+ F A G++ Sbjct: 24 FAHLHQHTQYSLLDGAAKLKDLLKWVKEVTPHDPACAMTDHGNMHGAVHFYNYASQLGVK 83 Query: 69 PIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PI+G + + + + G + + + LL GYQ L L SR Y + Sbjct: 84 PILGYEAYVVPGFGTRRDKKPGVSGEKGIFHLTLLARDFTGYQNLCRLSSRGYT-EGYYY 142 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI LQE +G+I +G + + A+ RLL ++ LFG+ ++ +Q Sbjct: 143 KPRIDHELLQE-HHQGVIAFSGCLGSEVQQLLLQGREDEAKARLLWYRDLFGENYFIEIQ 201 Query: 188 RHRGYDRYRESQVVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H ++ R + +++ A+ EL +VATN+ ++ + D AH+ L+A+ ++ ++R Sbjct: 202 DHGLPEQKRNNPILR-AWAQELGIGMVATNDGHYVKKTDATAHEALLAIQTKATLADENR 260 Query: 246 PRVTPDH-YLKNRSEM---VSIFSDLPEALENTVEIARRCSFILQV------HAPILP 293 + D Y+K EM + + E +NT IA C+ L V P LP Sbjct: 261 FKFPCDEFYVKGLEEMQKALPVAEWGEEPFDNTAHIASICNVDLPVGKKRVYQMPALP 318 >gi|119962046|ref|YP_947481.1| DNA polymerase III subunit alpha [Arthrobacter aurescens TC1] gi|119948905|gb|ABM07816.1| DNA polymerase III, alpha subunit [Arthrobacter aurescens TC1] Length = 1186 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 377/1050 (35%), Positives = 559/1050 (53%), Gaps = 72/1050 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA L + D+ PA+A TD LF A +F +KA GI+P Sbjct: 8 SFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKATDKGIKP 67 Query: 70 IIGCQLDIDM------QDNLKMTNQGK-----TPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IIG + + ++ ++ ++ + + + + LL G + L S Sbjct: 68 IIGVEAYVTPGTARGDKERVRWGDESQRKDDVSGGGSYTHMTLLSYNNVGMRNLFRASSI 127 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 L + R+ L +EGLI TG SG + + A + F+ +F Sbjct: 128 ASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTKLRLGQYREAVEAAAEFRDIF 186 Query: 179 GDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G Y G D R +++LA LPLVATN+ + E D +AH+ L+A+ Sbjct: 187 GAENYFCELMDHGLDIERRVTGDLLRLAKELNLPLVATNDLHYTHEHDAKAHEALLAIQS 246 Query: 237 STVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + + + +YLK+ EM +F D PEA +NT+ IA RC A Sbjct: 247 GSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEVSFNTGA 306 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +PRF +D E + L + GL+ R QG K R++ D+EL VI Sbjct: 307 NYMPRFPCPPGED----ETSWLVKEVDTGLKYRYPQGIPDK------VRKQADYELGVIT 356 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+ L+FERFLN Sbjct: 357 SMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLIFERFLN 416 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+SMPDFD+DF RR EVI YV KYG ERVA I+T+G+++ K AL+D R L P+ Sbjct: 417 PDRVSMPDFDVDFDDRRRSEVIDYVTKKYGDERVAMIVTYGTIKTKQALKDSSRVLGYPF 476 Query: 470 SQVDRLCKLIP----------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 S ++L K +P D +P S + ++ FR+ DP ++ E + +E Sbjct: 477 SMGEQLTKALPPAVMAKDIPLADIQNPES-KRYSEAGDFRQLIATDPEAAKVFETALGIE 535 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R HAAG+++ P+ ++P+ R + +TQF+ E GLIK DFLGL+ L Sbjct: 536 GLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLRNL 595 Query: 580 TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +L+ + RGV +DL + DD +Y LL TLG+FQL+ MR L+ M+PD Sbjct: 596 TIISDALENIKMNRGVDLDLENLELDDAASYELLARGDTLGVFQLDGGPMRSLLKLMKPD 655 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692 EDI A+++LYRPGP+ + Y RKNG ++++ IHP ++ LKE T G+I+YQ Sbjct: 656 NFEDISAVLALYRPGPMGANAHTDYALRKNGIQEVIPIHPELEEPLKEILGGTFGLIVYQ 715 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ F G NG S ++++ Sbjct: 716 EQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVKTLWDI 775 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L F+DY FNK+H+AAY VISY TA++K HY E++AA +T D+ +K + + R+ Sbjct: 776 LLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLNECRRM 835 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871 I ++PP VN ++F I + + AI+ VG ++ A ++ + S +DF + Sbjct: 836 GITVLPPDVNESSLNFTPVGTDIRFGMGAIRNVGVNVVDAMVAARKSEGKYTSFKDFLLK 895 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + N+R +ESL+ AGA D G+ R L + +++N ++FA Sbjct: 896 VPAVVCNKRTIESLIKAGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDLFA--- 952 Query: 932 GTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 F D+ + E + + E+ +LG Y S HPL + +L + E Sbjct: 953 -GFEDQEPEASLTTEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGVLSQHA----E 1007 Query: 985 ESVATI-------RGNNIRLAAMVVSKQQK 1007 +S+ +I G + +A M+ S ++ Sbjct: 1008 QSITSIIAEDGPHDGAIVTIAGMITSLSRR 1037 >gi|302866756|ref|YP_003835393.1| DNA polymerase III subunit alpha [Micromonospora aurantiaca ATCC 27029] gi|315503171|ref|YP_004082058.1| DNA polymerase iii, alpha subunit [Micromonospora sp. L5] gi|302569615|gb|ADL45817.1| DNA polymerase III, alpha subunit [Micromonospora aurantiaca ATCC 27029] gi|315409790|gb|ADU07907.1| DNA polymerase III, alpha subunit [Micromonospora sp. L5] Length = 1177 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 372/1071 (34%), Positives = 572/1071 (53%), Gaps = 64/1071 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YS+L+GA L ++ + A PA+AITD N+ A +F ++A AG++P Sbjct: 4 SFAHLHVHTEYSMLDGAARLKDLFAEAARLGMPAVAITDHGNMHGANDFYKQAMDAGVKP 63 Query: 70 IIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 I+G + + + + + + + + + + +G L +L SR Sbjct: 64 ILGVEAYVAPESRFHKARVKWGRPEQKSDDVSGNGAITHMTMWAANRDGLHNLFKLNSRA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + R+ + + E EG++ TG SG + A K ++ +FG Sbjct: 124 SMEGHYVKWPRMDMELIAE-HAEGIMATTGCPSGAVQTRLRLGQFDEALKVAAAYQDIFG 182 Query: 180 -DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 D ++ + H G D R + ++A ++P V TN+S + E EAHDVL+ V Sbjct: 183 KDNYFLEIMDH-GLDIERRVRDGLTEIARKLDIPPVVTNDSHYTHEAQAEAHDVLLCVQT 241 Query: 237 STVVSQKDRPRVTPDHY-LKNRSEMVSIFSD--LPEALENTVEIARRC--SFILQVHAPI 291 + V+ +R R Y +K+ +M ++ S + NT+ +A + + + H + Sbjct: 242 GSNVADPNRFRFEGGGYFVKSADQMRAVDSSELWQQGCRNTLLVAEKVDPAGMFTFHN-L 300 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +PRF E + EE+ R + AGL R G I +G+ Q ++EL VI +M Sbjct: 301 MPRFPIPEGE----TEESWFRKETFAGLARRFP-GGIPEGHVVQ-----AEYELGVIIQM 350 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFL+VADFIQWAK I VGPGRGS AGS+ AYAL ITD+DP+ L+FERFLNP+ Sbjct: 351 GFPSYFLVVADFIQWAKSQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPE 410 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D R L PY+ Sbjct: 411 RVSMPDVDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGFPYAV 470 Query: 472 VDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518 DR+ K +P DP HP +A R +DP V +++E ++ + Sbjct: 471 GDRITKAMPPAVMGKDIPLSGIFDPKHPRYAEA----GEIRGLYESDPDVKKVIETAKGI 526 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R HAAG+++ P+ + +P+ R + +TQF+ E GL+K DFLGL+ Sbjct: 527 EGLIRQTGVHAAGVIMSAEPIIEHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRN 586 Query: 579 LTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ ++ + G ++DL +P DD + Y LL TLG+FQL+ MR L M+P Sbjct: 587 LTIIDDAVKNIQLNHGRELDLLGLPLDDRQAYELLARGDTLGVFQLDGGPMRSLLRLMKP 646 Query: 638 DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691 D EDI A+++LYRPGP +D+ Y RKNG ++I IHP ++ L+E T G+I+Y Sbjct: 647 DNFEDISAVLALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLREILAPTYGLIVY 706 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQV + AQ+L+GY+L +AD+LRRAMGKK KE +DK+ F G + G S +++ Sbjct: 707 QEQVQRAAQILAGYTLGQADLLRRAMGKKKKEILDKEFIPFRDGCRERGYSDEAIQAVWD 766 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L FA Y FNK+H+AAY ++SY TA++K HYP E++AA +T D+ +K+ + + R+ Sbjct: 767 VLVPFAGYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRR 826 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCS 870 IQ++PP VNT F I + L A++ VG IM +K + DF S Sbjct: 827 MRIQVLPPDVNTSAGPFTPVGKEIRFGLGAVRNVGANVVASIMRCREEKGDYTDFYDFLS 886 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAH 929 +VD+ N++ +ESL+ AGA D + R LL D I YA K +++ A Sbjct: 887 KVDAVVCNKKTIESLIKAGAFDSLQHPRKGLLAVHADAIDAYADVKRKEAVGQYDLFGAG 946 Query: 930 ----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKG 982 + G + + + + + E+ +LG Y S HPL + +L I Sbjct: 947 FGEADTGGSTTVMPVIGEGEWDKRDKLAFEREMLGLYVSDHPLFGLEHVLGAAADTTIAA 1006 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E G + LA ++ Q++ T++G T + A E FFP Sbjct: 1007 LSEEGTVPDGAVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057 >gi|295394749|ref|ZP_06804964.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294972345|gb|EFG48205.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 1178 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 384/1080 (35%), Positives = 577/1080 (53%), Gaps = 84/1080 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA L +++ A+A TD LF A +F +A AGI+PI Sbjct: 5 FVHLHVHTEYSMLDGAARLGDLMAATNELGMRALATTDHGYLFGAFDFWNQATKAGIKPI 64 Query: 71 IGCQLDI-----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 IG + + + Q + ++ G+ + LL G Q L Sbjct: 65 IGVEAYVTPGTARNDKTVVKWRTDESQRSDDVSGGGR-----YTHMTLLSRNNRGMQNLF 119 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 + S L R+ LQ + GLI TG SG + + A K Sbjct: 120 KASSLASLDSALGNRPRLDRELLQNY-SNGLIATTGCPSGEVQTRLRLGQYEEARKAAGE 178 Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++++FG D + L H +R +++LA LPLVATN+ + E D AH+ L Sbjct: 179 YREIFGADYYFCELMDHGLEIERRVTKDLLRLAKELNLPLVATNDLHYTHESDATAHEAL 238 Query: 232 MAVAHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284 +A+ + + + + +YLK+ +EM +F +LPEA +NT++IA C Sbjct: 239 LALQSGSKLLEPTYEQGGSRFAFSGTGYYLKSPAEMRHLFKELPEACDNTLKIADMCEVS 298 Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 A +P+F E +D E + L + GL R QG + R++ D+E Sbjct: 299 FDTSANYMPKFPTPEGED----ETSWLIKEVDKGLHYRYPQGI------PDEVRKQADYE 348 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 L++I +M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPL+ L+F Sbjct: 349 LDIIIKMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLIF 408 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPDFD+DF RR EVI YV KYG E VA I+T+G+++ K AL+D R Sbjct: 409 ERFLNPERVSMPDFDVDFDDRRRSEVIDYVTQKYGSEYVAMIVTYGTIKTKQALKDAARV 468 Query: 465 LQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRL 511 L P+S + L K +P +P P +A FR + + Sbjct: 469 LGHPFSMGEELTKALPPAAMAKDIPLTDIENPEAPRYNEA----GDFRNLLATNEQAREV 524 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 E ++ LEGL R HAAG+++ P+ ++P+ R + +TQF+ E GLIK Sbjct: 525 FETARGLEGLKRQWGVHAAGVIMSSEPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKM 584 Query: 572 DFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGL+ LT++ +L+ + + R V++DL + DD +TY LL TLG+FQL+ G++ Sbjct: 585 DFLGLRNLTIISDALENIQRNRDVEIDLERLELDDEDTYKLLARGDTLGVFQLDGGGLQG 644 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE---- 684 L MQPD EDI A ++LYRPGP+ D+ Y RKNG ++I IHP + LKE Sbjct: 645 LLRLMQPDNFEDISATLALYRPGPMGADSHTNYAKRKNGLQEITPIHPELAEPLKEILDT 704 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+IIYQEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ+ F G + G S+ Sbjct: 705 TYGLIIYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKAELDKQQVGFFGGMKERGYSEE 764 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 A ++++L F+DY FNK+H+AAY V+SY TA++K HYP E++AA +T DN +K+ Sbjct: 765 AAQALWDILLPFSDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDNKDKLAV 824 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863 + + R+ +I ++PP VN ++F N I + + A++ VG I+E+ +K F Sbjct: 825 YLGECRKMHITVLPPDVNESELNFTPVGNDIRFGMGAVRNVGHNVVDGIVESRTEKGAFT 884 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 S DF +V S N+R +ESL+ +GA D G++R L++ + V++ Sbjct: 885 SFSDFLDKVPSHVCNKRTVESLIKSGAFDSLGHTRRALVEIHEEAVDSVVGVKRQEAAGQ 944 Query: 924 ENIFAHEKG----TFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 ++FA G +FS D++ +K + FE E ++G Y S HPL+ + ++ Sbjct: 945 FDLFAGLGGDDAASFSVPIPDRVEWDK----KEKLAFERE--MIGLYVSDHPLNGLEGVI 998 Query: 976 RKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFF 1032 + ++ R G+ I + M+ S ++ ++ R VT + E FF Sbjct: 999 ASESDLPLVDLISQGRSEGSTITVCGMITSLVRRVSKNSGRPYAIVTIEDLEASIEVLFF 1058 >gi|148543981|ref|YP_001271351.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus reuteri DSM 20016] gi|184153376|ref|YP_001841717.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112] gi|227364894|ref|ZP_03848939.1| DnaE family DNA polymerase III catalytic subunit [Lactobacillus reuteri MM2-3] gi|325682481|ref|ZP_08161998.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri MM4-1A] gi|148531015|gb|ABQ83014.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus reuteri DSM 20016] gi|183224720|dbj|BAG25237.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112] gi|227070041|gb|EEI08419.1| DnaE family DNA polymerase III catalytic subunit [Lactobacillus reuteri MM2-3] gi|324978320|gb|EGC15270.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri MM4-1A] Length = 1115 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 370/1037 (35%), Positives = 559/1037 (53%), Gaps = 67/1037 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L V SSYSLL+ +++++ A+A+TD N L+ A+EF A AGI+PI Sbjct: 3 FTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +L + + + T+ K +V L GYQ L++L + L Q ++ + Sbjct: 63 LGLRLVVALNE----TDGTKL------DLVFLAKNQRGYQHLMDLST----LQQTRKDKK 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L+ Q G + + P F S +LT GD V L + Sbjct: 109 ISLTIAQISPLLGELFIII----PPQSTVF--SVLAQPTSILTELANLGDDDSVLLGVNS 162 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D + + QL+ LPLV T+ +L+ D A VL A+ V KD P + Sbjct: 163 RLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAI--DAGVELKD-PTIEA 219 Query: 251 ----DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 HYL ++ ++V ++ L A + TVE+A C+ LQ AP+LP F + Q Sbjct: 220 GRRGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQ 279 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR+ + GL+ R +A G Q Y++RL EL VI M F YFLIV D + Sbjct: 280 QY----LRSLCIQGLKKR----RVAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVM 331 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A + I PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R MPD D+D Sbjct: 332 NFAHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPD 391 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RRDEV++YV KYGH+RVAQIITFG+L AK +RDV R +P + RL +P+ Sbjct: 392 NRRDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHG-L 450 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 H A+ + + + +P L++++Q+LEGL RH S HAAGIV+ ++PL ++VP Sbjct: 451 HVTLKDALKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVP 510 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + +D L +TQF +E GL+K DFLGLK L+++ +L + Q DL I F+ Sbjct: 511 L-QDGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNTLQMIRQEDPTFDLQKINFN 569 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D T L T GIFQ ESSG+R L + P EDI+A+ +LYRPGP++NI + R Sbjct: 570 DQLTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENIPHFTAR 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K GKEKI P ++ +L T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K Sbjct: 630 KAGKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKAT 689 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M+ + +FI+GA+++G S +A +FE + +FA+YGFN+SHA AY++++++ A++K HYP Sbjct: 690 MEDMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVHYP 749 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 F A M E N+EK+K+ DA+QF ++I P +N F + D +Y+ +AIKG Sbjct: 750 AAFFTALMNAET-NIEKLKRHVGDAKQFGVKISSPRINISESSFLLHDETVYFGFSAIKG 808 Query: 845 VGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 V I+E + F L +F +R+ + + ++E L+++GA D GY+R ++ Sbjct: 809 VRRDFIAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMGYNRAEM-- 866 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLG 960 +D + K +E +FA F D N R E LG Sbjct: 867 -IDALPKLISGIE---------LFAG-FANFDDPALQTAIDQRNEFPLLTRLTKENEYLG 915 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT----RKGSRIG 1016 Y SGHP+ Y ++G + + +A + N+ A ++V KT R+ + Sbjct: 916 VYLSGHPVTQY----YQLGQQLHATKIADLYPNS--EATIIVLTNHVKTIYTKREHREMA 969 Query: 1017 WVTFSEPAKEYEANFFP 1033 +V ++ + FP Sbjct: 970 FVNGTDETGAIDITVFP 986 >gi|212550708|ref|YP_002309025.1| DNA polymerase III alpha subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548946|dbj|BAG83614.1| DNA polymerase III alpha subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 1229 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 390/1091 (35%), Positives = 592/1091 (54%), Gaps = 97/1091 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL VHS YS L+G S+ ++DK + A+A+TD N+F EF C Sbjct: 4 FVHLHVHSYYSQLDGMSSITGLVDKACHYRMKALALTDHGNMFGIKEFYD--CIKKKNKN 61 Query: 67 ------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 I+PI+G + + + ++ K ++LL +GY+ L +LVS + Sbjct: 62 LHKDQKIKPILGVEAYVARRTRF---DKSKKVDSNGWHLILLAKNKQGYKNLCKLVS-IS 117 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFG 179 ++ RI L++ +EGLI + G I + ++Q AE+ +L FKK+F Sbjct: 118 WIEGFYYRPRIDKECLEQY-SEGLIATSACLGGEIPQKILERENTQEAEQAILWFKKVFE 176 Query: 180 DRLYVNLQRHRGYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAH 228 + Y+ LQRH+ + V ++LA T + ++ TN+ F+ EE EAH Sbjct: 177 NDFYLELQRHQTNKENSDQTVFLKQTVVNQSLLKLAKTTDTKIICTNDVHFIEEEHAEAH 236 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC---SFIL 285 D L+ + ++ R R T + K+ EM +IFSDLPE+L NTVEIA + + L Sbjct: 237 DRLICLGTGKYLNDPKRMRYTKQEWFKSIEEMNAIFSDLPESLGNTVEIADKIEPYNIDL 296 Query: 286 QVHAPI--LPRFIEKE---CDDIQKE-------EENELRNKAVAG----LEVRLAQGAI- 328 + PI +P E C +E +E++ R + G + ++L + Sbjct: 297 ETVMPIFSIPESFATEETYCTKYTEETLRQEFNKEDKSRFDKLGGYNKVIRIKLEADYLK 356 Query: 329 ------AKGYHAQDY----RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378 AK + +RL+FEL + M F GYFLIV DFIQ A+ + VGPGR Sbjct: 357 ELTLQKAKNRYGNPIPNAILERLEFELETMKTMGFPGYFLIVQDFIQAARNMGVSVGPGR 416 Query: 379 GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438 GS AGSV AY L ITDIDPL++ LLFERFLNPDR+SMPD DIDF D R +++R+V KY Sbjct: 417 GSVAGSVVAYCLEITDIDPLKYDLLFERFLNPDRISMPDIDIDFDDDGRMDIVRWVTKKY 476 Query: 439 GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-------- 490 G E+VA I+T+G++ K+++RDVGR + ++ ++L KLIP+ S Q Sbjct: 477 GKEKVAHIVTYGTMATKSSIRDVGRVQGLSMTETEKLTKLIPDRLPEDESGQIPKINIKN 536 Query: 491 AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY--- 546 I S RE R + + ++ L+ ++ LEG R HA GI+IG L+ +P+ Sbjct: 537 CIKYISELREVRYSNNKNLSDTLKYAEMLEGTVRQTGIHACGIIIGADDLTNFLPLATVK 596 Query: 547 -RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFD 604 + D+ VTQ+ IE GLIK DFLGLKTL++++ ++ + + K +D++ IP D Sbjct: 597 EKRTNEDILVTQYEGSMIESIGLIKMDFLGLKTLSIIKNTIANVKRSKNKTIDINHIPND 656 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY L + T+G+FQ ESSGM++ L ++P ED+IA+ +LYRPGP+ I + NR Sbjct: 657 DKLTYELYSRGQTIGVFQFESSGMQKYLRELRPTQFEDLIAMNALYRPGPMAYIPDFINR 716 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+ K I+ P ++ LKET G+ +YQEQVM +++ L+G+S ++D LR+AMGKK+K + Sbjct: 717 KHEKNSIIYDFPEMESRLKETYGITVYQEQVMLLSRDLAGFSRGQSDELRKAMGKKLKNK 776 Query: 725 MDKQKERFISGASKNGIS-KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M++ ++FI GA+KNG K I+ KFA+Y FNKSHA Y+ ISYQTA++K HY Sbjct: 777 MEQFHDKFIQGATKNGFGPKKKLEKIWNDWTKFAEYAFNKSHATCYSWISYQTAYLKVHY 836 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAI 842 P EFLAA++T DN+ +I KF + R I+++ P +N ++F V + I + L I Sbjct: 837 PAEFLAANLTHNRDNIVEITKFIDECRAMGIRVLGPDINESELNFTVNKEGHIRFGLGGI 896 Query: 843 KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQ 900 KGVG I+ E + F ++ DF R++ N++ +ESL +G D F G R Q Sbjct: 897 KGVGKNAVETIVKEREENGAFKNIFDFIERINLTACNKKSIESLSLSGTFDSFIGIKREQ 956 Query: 901 LLQSLDN----IQKYAQWVEKNRTNKHENI---FAHEKGTFSDKITLEKFSVE-----NS 948 N I+ ++ K + +K+ +I F + SD + + K + N+ Sbjct: 957 FFAENSNGETFIETLIRYGNKFQLDKNSDIGSLFGN-----SDPMGIAKLEIPLKDEWNN 1011 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILR---KMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 R E+ +LG Y S HPLD Y IL+ + I +E++ T G + L MV + + Sbjct: 1012 IERLNKEKDLLGVYVSSHPLDEYYLILKYICTLRINDFEKAKITQCGQELILGGMVTNYR 1071 Query: 1006 QKKTRKGSRIG 1016 + T+ GS G Sbjct: 1072 EGHTKAGSSFG 1082 >gi|312869124|ref|ZP_07729298.1| DNA polymerase III, alpha subunit [Lactobacillus oris PB013-T2-3] gi|311095370|gb|EFQ53640.1| DNA polymerase III, alpha subunit [Lactobacillus oris PB013-T2-3] Length = 1113 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 358/1039 (34%), Positives = 560/1039 (53%), Gaps = 70/1039 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 ++V L+VHSSYSLL+ + +++ A+A+TD N L+ A++F A AGI+P Sbjct: 2 NYVPLEVHSSYSLLQSPTRIPDLVKAAKQRGYTALALTDQNILYGAVDFYNTARQAGIKP 61 Query: 70 IIGCQLDIDMQD----NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 ++G ++ + + + LKMT LL +GY+ L+++ +R ++G Sbjct: 62 LLGLEITVALDELAGSQLKMT--------------LLAKNEQGYRNLMDISTRQQTAERG 107 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-- 183 K I + L + E +++L P+ A N + L + ++ G LY Sbjct: 108 KT---ITFTELAGLLKEVVVIL------PVQLAVL-NLIRQGTGWLTSLQQTVGRNLYLG 157 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +NLQ D S + + A +P+VAT +L+ D A L A+ ++ Sbjct: 158 INLQ----LDEVERSSLQRFAQEAGVPIVATTPVDYLNATDLFATKTLQAIGQGAQLTDL 213 Query: 244 D-RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 D + T D+YL R ++ + + L A++NT IA +C+ L+ AP+LP + Sbjct: 214 DAQATATGDNYLPVRQQVEAAYHQLGLAAAVDNTAVIADQCNVELKFQAPVLPHYQTPHG 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + LR +AGL+ R +A GY A YRQRLD EL +I RM F YFLIV Sbjct: 274 E----TAVDYLRQLCLAGLKKR----PLAAGYSATAYRQRLDHELAIIHRMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + +A + I PGRGS AGS+ AYAL IT++DPL + LLFERFLNP+R MPD D+ Sbjct: 326 WDVMNFAHRTKITTDPGRGSAAGSLVAYALAITEVDPLEYQLLFERFLNPERAQMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGHERVAQIITFG+L AK LRDV R ++ + L +P Sbjct: 386 DIPDNRREEVLAYVHRKYGHERVAQIITFGTLAAKQVLRDVSRVFKLTKFETTTLLDALP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + QA+A+ R + P + +L +++++LEGL RH STHAAGIV+ PL Sbjct: 446 RGGSFTLD-QALAESQRLKNLLNDQPKLRQLFQVARQLEGLPRHYSTHAAGIVLSAAPLH 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 ++VP+ + L +TQF +E GL+K DFLGL+ L+++ +L + Q+ + L Sbjct: 505 EIVPL-QAGSEGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNTLRMIRQQEPQFSLER 563 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 + D T L T G+FQ ES+G+R L + PD EDI+A+ +LYRPGP++NI Sbjct: 564 VSLADPATLQLFQRGQTDGVFQFESAGIRNVLTALHPDHFEDIVAVNALYRPGPLENISH 623 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK G+E + + P+L T G+++YQEQVMQ+A ++G++L EAD+LRRAM KK Sbjct: 624 FIARKQGQEPVRLPDQSLAPILAPTYGILVYQEQVMQLASAMAGFTLGEADLLRRAMSKK 683 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K+ MD + +F++GA G +A +F+ + +FA+YGFN+SHA AY+ ++++ A++K Sbjct: 684 KKQTMDNMRAKFMAGARAKGYQSALASQVFDYIDQFANYGFNRSHAVAYSKMAFEMAYLK 743 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYP EF A + E N+ K+++ +A++ ++I P +N F V D +IY+ L Sbjct: 744 CHYPTEFYTALLNAE-GNITKLRQHVTNAQRMGVKINGPRINLSRAQFTVHDQQIYFGLT 802 Query: 841 AIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIKG A + E ++ F + D R+ K VL L++AGALD GY+R Sbjct: 803 AIKGGRRDFIADLLQERDSNGSFKDIRDLIHRLPDKWQKEEVLTPLIYAGALDGLGYNRA 862 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQ 956 ++++SL N+ + + A G D S + R E Sbjct: 863 EMIESLPNLLSGIE------------LLATLPGLSGDPSLQSSISHRQEYPLTTRLAKEN 910 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSR- 1014 +LG Y SGHP+ Y R++ + VA +R N + L + + T+K R Sbjct: 911 ELLGVYLSGHPVSQY----RQLASRLRAGRVADLRPNQRVTLILFINRVKVIHTKKDHRP 966 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + +++ S+ + + FP Sbjct: 967 MAFISGSDESGLLDVTVFP 985 >gi|126651370|ref|ZP_01723577.1| DNA polymerase III DnaE [Bacillus sp. B14905] gi|126591899|gb|EAZ85982.1| DNA polymerase III DnaE [Bacillus sp. B14905] Length = 1020 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 353/1023 (34%), Positives = 551/1023 (53%), Gaps = 50/1023 (4%) Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75 +H+S LL+ + L ++ + + A AI +T L+ L F + A I +IG + Sbjct: 1 MHTSADLLKSTIRLEQLIPFLQEQKTQACAIVNTK-LYGLLPFCKAMQQANIHAVIGLSI 59 Query: 76 DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 ++ D FP +VL + EGYQ L+++ S + + ++ + W Sbjct: 60 NVQWHDKT---------FP----LVLYAQSQEGYQHLLKISSAVSI----REDEVLPWKW 102 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195 L+ L +L+ G + S+ LF Y+ + R G + Sbjct: 103 LKGYAAGCLALLSSDDIGDVKDWQALVSA---------LAHLFQHHFYMGITRPGGVTQA 153 Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255 E ++++ +PLVA + FL +D+ A++V A+ + ++ Sbjct: 154 NEKELIEWCEGQAIPLVAVQSCYFLRPDDHFAYEVARAIDTGDKLGDTMLTANLQGYFAP 213 Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315 E S F+D PE LE+ ++ C I+ + +P+F + + E+ L +A Sbjct: 214 TAQEWQSWFADRPEWLESCGQMLASCHAIIPEMSVQMPKFPVP----VGETAESLLVKEA 269 Query: 316 VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375 AGLE R Q I GY R+RL +EL +I M ++ YFL+VADF+++AK N I G Sbjct: 270 FAGLEGRFNQMDIPNGY-----RERLQYELEIICSMGYADYFLVVADFMRFAKDNRILTG 324 Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435 PGRGS AGS+ AY+L IT +DPL + LLFERFLNP+R+S+PD DIDF +R +VI+YV Sbjct: 325 PGRGSSAGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVDSKRHQVIQYVA 384 Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495 KYG V QIITFG+L AKA RDV R ++++ K+IPN P ++LQ ++ Sbjct: 385 QKYGKANVGQIITFGTLSAKAVARDVARVFSFGAETLEKISKMIPNKPG--ITLQKALEE 442 Query: 496 SRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554 S + L+ D R +++ KLEGL R++STHAAG+VI PL VP+ D + Sbjct: 443 SYDLQGWLSEDEQHQRWFDVALKLEGLPRNSSTHAAGVVIAPSPLVNTVPI-EDGHEGIY 501 Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613 TQ+ M IE GL+K DFLGL+ LT+L Q G +D IP D +T+ LL Sbjct: 502 CTQWPMGDIEACGLVKMDFLGLRNLTILEQMRWSIYKAGGPWIDFERIPMHDEKTFQLLQ 561 Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673 T GIFQLES GM+QAL + P DI A+ +LYRPGP++ I VY RK GKE +V Sbjct: 562 KGDTSGIFQLESEGMKQALRDIHPTHFLDIAAVNALYRPGPMEFIPVYAKRKAGKEMVVM 621 Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733 HP+++P+L+ET GVI+YQEQ+++IA +L+G+S+ +AD+LRRA+ KK ++ +++Q+ F+ Sbjct: 622 PHPVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQQVSFV 681 Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793 GA K G + +A ++EL+ +FADYGF KSHA AY+VISYQ A++K H+P F AA ++ Sbjct: 682 QGALKQGYDQQVATEVYELIVRFADYGFPKSHAVAYSVISYQMAYLKAHFPQSFYAALLS 741 Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853 N++KI++ Q+A+ I PPS+ F V I YSL+ IKGV T +I Sbjct: 742 NATGNIDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEGIRYSLSGIKGVPHTFIENI 801 Query: 854 MEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911 P +L D + ++ +V+E+L++AGALD R L+ ++D K+ Sbjct: 802 HTLRQSNPLALHNLFDLAVALSAQHFKPKVIEALIYAGALDYLEKDRAVLIMTIDAALKH 861 Query: 912 AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 A+ + R + +I + +F ++ + + +E+ LGFY S HP V Sbjct: 862 AELL---RPTEDIDISTATEFSFGKPKYMQVDDMPQKE-KLMHEKESLGFYISAHP--VT 915 Query: 972 KPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 + L + + +R G +++ ++ ++ +T+KG ++ +V + A Sbjct: 916 QERLYWADVNSTCRELKQMRDGTYVKMIGVIEEVKKIRTKKGEQMAFVQLQDEHGAVSAT 975 Query: 1031 FFP 1033 FP Sbjct: 976 LFP 978 >gi|262037946|ref|ZP_06011366.1| DNA polymerase III subunit alpha [Leptotrichia goodfellowii F0264] gi|261748024|gb|EEY35443.1| DNA polymerase III subunit alpha [Leptotrichia goodfellowii F0264] Length = 1151 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 350/989 (35%), Positives = 568/989 (57%), Gaps = 64/989 (6%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL+VH+ YSLLEG + +++ +A+TDT+ +F +EF +K +GI+P+I Sbjct: 6 VHLKVHTEYSLLEGVGKIEEYVERAKFMGIKTLAVTDTS-MFGVIEFYKKCIKSGIKPVI 64 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G ++ +D + ++G+ S+ LL +GY R + +S + ++ +I Sbjct: 65 GLEVFLD-----GIVSEGEY------SLTLLAKNKKGY-RNLSKLSSLSYSRFNRRRNKI 112 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L E ++ L +L+GG I + A+K + K F + ++ + + Sbjct: 113 KYEELLEYSSD-LYILSGGIHSEIIKGISEYKYPEAKKVAVKLAKDFKENFFLEVPAVKR 171 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 + R+S + ++ + + TN+ + ++ + ++ ++ + D Sbjct: 172 LESVRKS-LKEMIKEISVGYLITNDVYYPNKGEAVLQKIMSSIKEGNKIETVQNDIFYDD 230 Query: 252 HYLKNRSEMVSIFSD----LPEALENTVEIARRC----------------------SFIL 285 YLK+ E+ F E ++NTV +A C SF + Sbjct: 231 LYLKSFDEIKESFLQDEEFFDEGMKNTVILAENCNTDFEFDVFKFPEYELPEGISESFYI 290 Query: 286 Q--VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 + V+ I +++++ + +++ENE+R K +A +D +R D+ Sbjct: 291 RKLVYEGIAKKYLKENIEITTEDQENEIRKKLIAK--------------DREDVFKRADY 336 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL VI M ++GYF+IV DFI++AK++ + VGPGRGS AGS+ +YAL IT+IDPL+++L+ Sbjct: 337 ELEVINSMGYNGYFIIVWDFIKFAKESGVYVGPGRGSAAGSLVSYALNITEIDPLKYNLI 396 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD DIDF Q++R+ VI YV NKYG++ VA IITFG+L+A+AA+RDVGR Sbjct: 397 FERFLNPERISMPDIDIDFDQEQREIVIDYVLNKYGNKYVAHIITFGTLKARAAIRDVGR 456 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 L + +VD+ KLIP + +L ++ RE +D + +++ S K+EG R Sbjct: 457 VLNVSLKKVDKAAKLIPFNMDLEKALDSVGS---LREMYNSDNEIKTMIDYSLKIEGRVR 513 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAS HAAG+VI L + +P Y D ++ + TQ+ MK +E+ G++K DFLGLK LT+L+ Sbjct: 514 HASVHAAGVVISKDVLDEEIPTYSDGKTPILSTQYQMKELEELGILKMDFLGLKNLTILR 573 Query: 584 KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 K+++ + + +G + I ++ + Y L+T TLGIFQ ES G+R+ ++ ++ + ED Sbjct: 574 KTIENIEKNKGEILRTENINLENKKAYKLMTEADTLGIFQCESPGIRKLMKKLKIEKFED 633 Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 I AL++LYRPGP+ + +V + KN + KI + +L+ET GVI+YQEQVM+IA Sbjct: 634 ITALLALYRPGPLQSGMVEDFIAAKNAEAKIKYPDESLKEILEETYGVILYQEQVMKIAS 693 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 ++ YSL EAD LRRA+GKKI +++ +E+F+ A +N +S+ A I+ L+ KF YG Sbjct: 694 EMAKYSLGEADQLRRAIGKKIPAIIEENREKFVKKAQENNVSREKADRIYNLIDKFGGYG 753 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSH+AAYA+I Y TA+ K +YP+EF AA MT EM N+E++ F +AR I+I+ P Sbjct: 754 FNKSHSAAYALIVYWTAYFKANYPLEFFAAIMTTEMYNIERLSLFINEARGKGIEILVPD 813 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 VN DFKV ++ I + L AIKGVG R IME F S EDF R+ + LN++ Sbjct: 814 VNLSDYDFKVEESGIRFGLVAIKGVGGNFVREIMEERESGIFVSYEDFVYRMKQRGLNKK 873 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 LESL+ +G+LD +R + +S++ + +++Q ++ + +F + D + Sbjct: 874 QLESLILSGSLDNLDGNRKEKTESINKVMEWSQKKYESEEDLQMILFGGKSKKIGD-FQM 932 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +K + S+ +NE+ LG Y S HPLD Sbjct: 933 DKTEEYSQSILLKNEREYLGIYVSSHPLD 961 >gi|21673669|ref|NP_661734.1| DNA polymerase III, alpha subunit [Chlorobium tepidum TLS] gi|21646788|gb|AAM72076.1| DNA polymerase III, alpha subunit [Chlorobium tepidum TLS] Length = 1190 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 358/1025 (34%), Positives = 563/1025 (54%), Gaps = 84/1025 (8%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 L + FVHL H+ YS+ + ++ A+A+TD +F+ E +A Sbjct: 5 LRSALEFVHLHTHTHYSMQSSPIFPGDLFAACKKQGMTAVAVTDYGAMFNMPELFGQAKK 64 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 A ++ I+G ++ + G +++LL+ GY+ + ++SR Sbjct: 65 AEVKLIMGAEI--------YLAGTGSRDSGKPATLILLIRDDIGYRNMCVILSRAARDGF 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + S L+E +GL+ L+ SG I RA + A ++ L+G+ Y+ Sbjct: 117 SNGLPHVDRSVLEEC-RDGLVCLSAAHSGLIGRALLSGNETEAANFANYYRDLYGEHFYL 175 Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ+H Y+ ++L+ +PLVATNN +L D + ++A ++ + Sbjct: 176 ELQKHGAPYEEQLVPGTIRLSEQLGIPLVATNNVHYLDRRDSGCYRAMIANRTKQRLNSQ 235 Query: 244 DRPRVTPDH--YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + + P H Y K+ +EM +F + L+NTV+IA CS+ P LP+F E Sbjct: 236 NL-QCLPGHENYFKSAAEMSLLFDNAHGELDNTVKIAEACSYTFINKDPHLPKFPLPEGF 294 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D +KE LR+ G + + A G ++ + R++ EL VI +M +S YFLIV+ Sbjct: 295 DSEKEY---LRHLTWEGAKEKYGA---ADGTIPEEVKARIELELGVIEKMGYSAYFLIVS 348 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D I ++K VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R+SMPD DID Sbjct: 349 DLIAASRKMGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERISMPDIDID 408 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F + +V+ Y KYG E VA+++ G+L AKAA+RD GR L +P VD+L KL+P+ Sbjct: 409 FTPVGKQKVLDYTVQKYGAESVAKVVAIGTLGAKAAIRDAGRVLDVPLKAVDQLAKLVPS 468 Query: 482 DPAHPVSLQAIADDSRFREARL------ADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 P + + FRE + DP +L++ ++ +EG R+ S HA +VI Sbjct: 469 RPGTSL-------EDAFREVKELKRLVDTDPQYQQLVQYARAMEGRARNVSMHAGAVVIT 521 Query: 536 DRPLSQLVPMYRDVRSDLP--------------------------VTQFNMKWIEKAGLI 569 D L + VP+Y + + VTQF+ IE+AGL+ Sbjct: 522 DGALEEQVPLYVSNKIETEERKYADEFDQNDIDGTKAESSDEKQVVTQFDKNCIEQAGLL 581 Query: 570 KFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K D+LGL+TL ++ ++L + +R G+ +DL +P DD +T+ + GIFQ ESSGM Sbjct: 582 KIDYLGLETLAVIDETLRLIKKRHGIDIDLEKVPMDDRKTFRIFQEGKMAGIFQFESSGM 641 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIV--------VYNNRKNGKEKIVSIHPLIDP 680 + + +QP I DIIA+ +LYRPG ++ ++ ++ +RK+G+E+I +HP+++ Sbjct: 642 QSYMMRLQPTTIGDIIAMSALYRPGALNAVIDEHRNAVDLFIDRKHGREEIDYMHPMLEE 701 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LKET GVI+YQEQVMQI+Q++ +SL +AD LR+AMGKK + M K KE F+ GA+ Sbjct: 702 ILKETYGVIVYQEQVMQISQVMGRFSLGKADNLRKAMGKKDPKLMQKFKEEFVEGAASID 761 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 ++K +A IF+L+A+FA YGFNKSH+AAY V++Y TA++K HY +EF+ A + E+ + E Sbjct: 762 VNKALATRIFDLMAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYTIEFITAILNSEIGDTE 821 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEA 856 ++K +A+ F I ++PPS+N F V +++ I L+AIK VG AR ++ A Sbjct: 822 RMKHLTDEAKGFGIFMLPPSINKSDALFSVEEHKGRPCIRVGLSAIKQVG-GGARAVVAA 880 Query: 857 SA---DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 KPF +L D + VD + +NR+ LE L+ AGALD +R +LL ++D K+ Q Sbjct: 881 RLRRDGKPFLNLFDLTASVDLRAMNRKALECLIQAGALDEIDPNRGKLLANVDKAIKFGQ 940 Query: 914 WVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS-----SVRFENEQRVLGFYFSGHP 967 K T F + FSD + + ++N+ S + + E+R++GFY S HP Sbjct: 941 IQNKAVTLGQGGFFNDD---FSDGQAGVHYPDLDNAEPMPESEKLQYEKRLVGFYLSHHP 997 Query: 968 LDVYK 972 LD ++ Sbjct: 998 LDRFR 1002 >gi|169348422|ref|ZP_02866360.1| hypothetical protein CLOSPI_00137 [Clostridium spiroforme DSM 1552] gi|169293891|gb|EDS76024.1| hypothetical protein CLOSPI_00137 [Clostridium spiroforme DSM 1552] Length = 1017 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 366/1027 (35%), Positives = 566/1027 (55%), Gaps = 60/1027 (5%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQV+S+YS + + ++ K + A+A+TD +N+F A+EF++ I+PI G Sbjct: 4 HLQVYSAYSFQNSTILIEDLCKKASDLHYEALALTDKDNMFGAMEFTKCCAKYRIKPIYG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + +++ + +P ++LL GY L+++ S + L D Sbjct: 64 LEASVEIDHEI---------YP----LILLAKNTSGYFSLVKITSDISLSDNKAIKFDDL 110 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 + E L +L+G G I+R A K L FK F D YV LQ H Sbjct: 111 VKH-----QEHLFVLSGCKEGIIERLILKELDSEALKYLKLFKNSF-DNFYVCLQNHNLA 164 Query: 193 DRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 +++ ++V L +P+ +N +L ++ ++L A + + P VT Sbjct: 165 MQHKVNERLVALTLLENIPICVSNEVRYLESKEAYTLELLQAFSKGQTLDINHEP-VTDQ 223 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEEENE 310 YLK+ EM SIF + +ENT I C+ + +H LP++ + K + + Sbjct: 224 LYLKSSYEMESIFD--KKYIENTDYIINLCNASIPLHHMHLPKYPVPKNGN-----ASDY 276 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 L+ GL+ R I Y QRL EL+VI +M F YFLIV D++++AK N Sbjct: 277 LKQLCSVGLKKRFKNQKINTVY-----LQRLKKELDVIKKMGFDDYFLIVFDYVRYAKIN 331 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 I VGPGRGS AGS+ AY L IT+IDPL+++L+FERFLN +R+SMPD DIDF DRRDE+ Sbjct: 332 KILVGPGRGSAAGSLVAYVLGITNIDPLKYNLVFERFLNEERVSMPDIDIDFQDDRRDEI 391 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 + YV NKYG E V QI+TF + K A++D+G+ L + +++ L K IP P + S + Sbjct: 392 VEYVTNKYGQEHVGQIVTFSTYGPKVAIKDLGKVLGITLPRLELLAKNIPTGPKNRKSAK 451 Query: 491 AIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 + + S F+ D ++ R++ +E L R+ STHAAG+V+ + L+Q+VP+ R Sbjct: 452 EVYETSYNFQSMVNRDLALRRIMPSVFIVEKLPRNISTHAAGVVLSNDRLNQVVPLTRGP 511 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHET 608 + + VTQ++ +IE GL+K DFLGLK LT++ L D G K++++ I +D +T Sbjct: 512 NNGI-VTQYSKDYIEDVGLLKMDFLGLKNLTIIDYILKDIEKNDGRKININEIELNDKKT 570 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + L++ T GIFQLES GM+ L MQ +C++D+IA ++L+RPGP+ NI Y RK G+ Sbjct: 571 FQLISRGDTFGIFQLESPGMKNLLIKMQCNCLDDLIAAIALFRPGPMANIPAYIARKKGE 630 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E + + P+L T G+IIYQEQ+MQ+AQ ++G+SL++AD+LR+AM KI M Sbjct: 631 EPVTYPLDCLKPILSSTYGIIIYQEQIMQVAQRVAGFSLAKADILRKAMSDKIVSLMASM 690 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 K FISG NG S++ AV IFEL+ KFA+YGFNK+H+ AY ++Y A++K +YP+EF Sbjct: 691 KTEFISGGIANGFSESEAVGIFELIEKFANYGFNKAHSVAYGYVAYWLAYLKANYPLEFF 750 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 +A ++ E + Q+ +++ ++I+PPS+N FKV D I YSL AIK VG Sbjct: 751 SALLSNEQSSDSNKINCIQEGKKYGVKILPPSINYSTDRFKVEDGNIRYSLLAIKNVGYA 810 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 + I++ F + DF SR++S KLN ++++SL+ AGA D F +R + +L +I Sbjct: 811 GYQAIIQEREKGLFKDVFDFISRMESSKLNSKMIDSLIMAGAFDEFELNRSTIKYNLSHI 870 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +YAQ KN E +T+ K +N E E+ VLG Y S HP+ Sbjct: 871 MEYAQL--KNMIGIDE----------PPILTIVK---DNRMKILEEEKLVLGVYLSMHPI 915 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT---RKGSRIGWVTFSEPAK 1025 + K L I SV+ + N + +V++ + K +KG + +V + Sbjct: 916 ALIKQNLNLKII-----SVSELHNNIDKYVTIVMAISRVKAIVDKKGQEMCFVDGYDETG 970 Query: 1026 EYEANFF 1032 E + F Sbjct: 971 EIDGVVF 977 >gi|311113352|ref|YP_003984574.1| DNA-directed DNA polymerase III subunit alpha [Rothia dentocariosa ATCC 17931] gi|310944846|gb|ADP41140.1| DNA-directed DNA polymerase III alpha subunit [Rothia dentocariosa ATCC 17931] Length = 1180 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 373/998 (37%), Positives = 542/998 (54%), Gaps = 55/998 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F HL VH+ YS+L+GA L ++ ++A +D LF A +F ++A A I+P Sbjct: 5 GFAHLHVHTEYSMLDGAARLGDLFQYARELGMDSMATSDHGFLFGAFDFWRQAKANDIKP 64 Query: 70 IIGCQL------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 IIG + + D + G + + + T EG L S Sbjct: 65 IIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYT---HMTMWAETTEGMHNLFRASS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 L Q + R+ LQ ++GLI TG SG I Q A F+ + Sbjct: 122 VASLEGQLYKP-RMDREVLQTY-SKGLIATTGCPSGEIQTRLRLGQYQEAVAAAAEFRDI 179 Query: 178 FG-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 FG D Y + H G D R Q + +LA LP VATN+ + +ED+ AH L+ V Sbjct: 180 FGKDNFYCEVMDH-GLDIERNVQADLHRLAKELNLPFVATNDLHYTRQEDHTAHAALLCV 238 Query: 235 AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + ++ R + D+ YL++ EM IF D+P A ENT+EIA RC+ A +P Sbjct: 239 QSGSTLTDPKRFKFDADNFYLRSPEEMYQIFGDVPGACENTLEIAERCNVEFNTKANYMP 298 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F E ++ EE+ + GL R G K R++ ++E+ VI M F Sbjct: 299 NFPVPEGEN----EESWFVKEVERGLHYRFPNGVPDK------VREQAEYEVGVITSMGF 348 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD++PL L+FERFLNPDR+ Sbjct: 349 PGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLNPLNHDLIFERFLNPDRV 408 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFD+DF RR EVI YV KYG ++VAQI+TFG+++AK AL+D R + PYS + Sbjct: 409 SMPDFDVDFDDRRRAEVIDYVTEKYGEDKVAQIVTFGTIKAKQALKDASRVMDQPYSVGE 468 Query: 474 RLCKLIPNDP-AHPVSLQAI--ADDSRFREA----RLADPSVDRL----LEISQKLEGLY 522 RL K +P D ++L + +D R+ EA L + VD++ E ++ LEGL Sbjct: 469 RLTKAMPPDVMGKNIALANVYNPEDKRYSEAGDLRALIEDPVDKIYGEVFETAKGLEGLK 528 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ + L+ ++P+ R +TQF+ E GLIK DFLGL+ LT++ Sbjct: 529 RQWGVHAAGVIMSSKNLTDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTII 588 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +LD + RG+++DL + DD E+Y LL TLG+FQL+ MR L+ M+P+ E Sbjct: 589 SDALDNVKMNRGIEIDLENLEVDDKESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFE 648 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 I A+++LYRPGP+ ++ Y RKNGK++I IHP ++ L E T G+I+YQEQV Sbjct: 649 HISAVLALYRPGPMGANSHTNYALRKNGKQEIQPIHPELEEPLAEILDTTYGLIVYQEQV 708 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ E F G NG S+ ++++L Sbjct: 709 MAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYEAFHDGMISNGYSEGAVKALWDILLP 768 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 F+DY FNK+H AAY ++SY TA++K HYP E++AA +T DN +K+ + + R I Sbjct: 769 FSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGIT 828 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874 ++PP VN + F I + + AI+ VG ++ A +K F+S DF +V Sbjct: 829 VLPPDVNESTLTFAPVGKDIRFGMGAIRNVGANVVDGMIAAREEKGHFESFNDFLKKVPL 888 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932 N+R +ESL+ AGA D ++R L ++ A V++ ++F Sbjct: 889 VVCNKRTIESLIKAGAFDELKHTRRSLSLVHESAVDAAVSVKRKEAAGQFDLFGSLGMDD 948 Query: 933 TFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPL 968 D +++ + + R E+ +LG Y S HPL Sbjct: 949 ALGDDLSVTVPDIPDWERREKLNFEREMLGLYVSDHPL 986 >gi|300726853|ref|ZP_07060283.1| DNA polymerase III, alpha subunit [Prevotella bryantii B14] gi|299775966|gb|EFI72546.1| DNA polymerase III, alpha subunit [Prevotella bryantii B14] Length = 1235 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 383/1114 (34%), Positives = 572/1114 (51%), Gaps = 101/1114 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------SQ 60 FVHL VH+ YS+L+G + ++DK D +AITD +F EF + Sbjct: 4 FVHLHVHTHYSILDGQSKIPRLVDKAIQDGMKGMAITDHGVMFGIKEFVDYCSGVNKGRK 63 Query: 61 KACAAGIQPIIGCQLDID---MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 K +PIIGC++ + ++D +K N ++ + +++L EGY+ LI+LVS Sbjct: 64 KEGLEPFKPIIGCEMYVAHHRLEDKVK-ENGDQSGY----HLIVLAKNYEGYKNLIKLVS 118 Query: 118 RMYL--LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 R ++ ++ R+ L E EGLI+ + +G + A + L + Sbjct: 119 RSWVDGYYYRPRTDRVDL----EKYHEGLIVCSACIAGEVPAKIIKGDIAGAREALEWYH 174 Query: 176 KLFGDRLYVNLQRHRGYDRY----RES---------QVVQLAYTHELPLVATNNSLFLSE 222 ++FG+ Y+ LQRH D RE+ ++ A + + L+ +N+ F + Sbjct: 175 RVFGEDYYLELQRHEVKDPVIMANREAFPLQQKANKVLIDFAKEYGIKLICSNDVHFEDK 234 Query: 223 EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282 E EAHD L+ ++ + R R + + K R EM +FSD+PEAL NT++I + Sbjct: 235 ETAEAHDHLLCLSTGKDLDDPMRMRYSKQEWFKTREEMNEVFSDVPEALSNTLDILDKVE 294 Query: 283 FILQVHAPILPRFIEKEC----DDIQKEEENE---------------------------- 310 H PI+P F E DDI+K+ E Sbjct: 295 MYSIDHGPIMPFFPIPESFGTEDDIRKKFSTEDLLKEFSSDENGDNTLPREDGLKKIESL 354 Query: 311 ------LRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVA 361 R K A +LA K Y Q+ ++ ++FEL+V+ M F GYFLIV+ Sbjct: 355 GGWDKVYRIKYEAEYLAKLAYDGAKKLYGDPLPQNVKEHVNFELHVMKTMGFPGYFLIVS 414 Query: 362 DFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI+ A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D Sbjct: 415 DFIRAAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDT 474 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF D R +V+R+V +KYGHE A IIT+ S+ K +++DV R ++P + + LCK IP Sbjct: 475 DFDDDGRGKVLRWVMDKYGHENCAHIITYSSMATKNSIKDVARVEKLPLDRSNALCKAIP 534 Query: 481 NDPAHPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 + + + AI REA + DP ++ ++ LEG R HA G +I Sbjct: 535 DRLPDGLKMNLTNAIKCTPELREAESSSDPRERNTIKYAKMLEGTVRGTGIHACGFIICR 594 Query: 537 RPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 P+S VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Q Sbjct: 595 DPISNWVPVSTADDPDFPGLKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKQ 654 Query: 592 R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 GV+VDL IP DD TY L T+G FQ ES+GM++ L ++P ED+IA+ +LY Sbjct: 655 TTGVEVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELKPTVFEDLIAMNALY 714 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RKNG+E+I P ++ LK+T G+ +YQEQVM +++ L+ ++ E+ Sbjct: 715 RPGPMDYIPSFIARKNGREEIKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRGES 774 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D LR+AMGKK K +D+ K +F+ +NG + I+ KFA Y FNKSHA Y+ Sbjct: 775 DALRKAMGKKKKAIVDQMKPKFLKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHATCYS 834 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++YQTA+MK HYP EF+AA MT + +I K ++ + IQ + P VN F V Sbjct: 835 WVAYQTAYMKAHYPAEFMAALMTRRFSQITEITKLMEECKSMGIQTLGPDVNESYSGFGV 894 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D I + L+AIKG+G A I+ E + P+ S+ DF RVD +NR+ ESL + Sbjct: 895 NDKGEIRFGLSAIKGMGGNAAASIVAERQKNGPYKSIFDFAERVDFGSVNRKAFESLALS 954 Query: 889 GALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 G D FG R Q + LD + KY Q + + ++F + Sbjct: 955 GGFDGFGLRREQYFGTSAKGEVFLDTLVKYGQLFQAEQMEAQTSLFGGADAIEIATPPIP 1014 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRGNNIRLA 998 + ++ + E+ ++G Y S HPLD Y +L M E+ + +I L Sbjct: 1015 EGEQWSTIEKLNRERDLVGIYISAHPLDDYSIVLNSMCNTHCTEIEDKAELAKKEDIVLG 1074 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V + K T+ G G+VT + E FF Sbjct: 1075 GIVTGVKSKFTKNGKPCGFVTIEDFEGSGELAFF 1108 >gi|315604412|ref|ZP_07879478.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral taxon 180 str. F0310] gi|315314118|gb|EFU62169.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral taxon 180 str. F0310] Length = 1180 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 372/1076 (34%), Positives = 576/1076 (53%), Gaps = 74/1076 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL HS YS+L+GA + ++ A QPAI +TD LF A +F AG++P Sbjct: 4 SFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAYDFYTNCVNAGVKP 63 Query: 70 IIGCQLDI-------DMQDNLK----MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IIG + + D Q L + + + + L+ + EG L L S Sbjct: 64 IIGLEAYVTPGTSRFDRQKVLWGEPWQRSDDVSAGGSYNHLTLVAYSTEGMLNLFRLGSY 123 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 Q + R L + EGLI+ TG SG + A + +F Sbjct: 124 ASTDGQFGKWPRADKELLSQF-HEGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRDIF 182 Query: 179 G-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 G + YV + H G D R QV+ +A PLVATN+S ++ +D + D L+ + Sbjct: 183 GPENFYVEVMDH-GIDIERRTHQQVLDIAKLMNAPLVATNDSHYVKRDDRKIQDALLCIN 241 Query: 236 HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSF---ILQVHAPI 291 + ++ DR + D +Y++ EM S++S+LP A ++T+EIA RC + A Sbjct: 242 SGSRINDPDRFKFDGDGYYIRPSEEMRSLWSELPGACDSTLEIAERCDVRFTTTKEGANY 301 Query: 292 LPRFIEKECDD----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 +P F + +D KE E LR++ G+ R++ +E +V Sbjct: 302 MPEFPVPDGEDKTSWFVKEVERGLRDRFPNGI--------------PDAVRKQAQYEEDV 347 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I M F GYFL VAD+I WAK I VGPGRGSGAGS+ AYA+ IT+++PL L+FERF Sbjct: 348 IISMGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYAMKITELNPLEHGLIFERF 407 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D R L Sbjct: 408 LNPERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGK 467 Query: 468 PYSQVDRLCKLIPNDPA---HPVSLQAIADD--------SRFREARLADPSVDRLLEISQ 516 + ++L K +P PA +S+ I D+ + FR+ +P +++ + Sbjct: 468 DFKVGEQLTKALP--PAIMGKDISVHGIFDEKDKRYAEAAEFRKFYEENPDTHEVVDYAL 525 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 LEGL R HA +++ L+ ++P+ + + +TQF+ E GL+K DFLGL Sbjct: 526 GLEGLTRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGL 585 Query: 577 KTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT++ +L+ +A G DL + FDD +TY LL TLG+FQL+ GMR L+ M Sbjct: 586 RNLTVVSDALENIAINGKPDPDLDHLSFDDKKTYELLGRGETLGVFQLDGGGMRDLLKLM 645 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVI 689 +PD EDI A+ +LYRPGP+ ++ Y RKNG+++I IHP L +P+ L T G+I Sbjct: 646 KPDNFEDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEEILGTTFGLI 705 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQIAQ L+GY+L +AD+LR+AMGKK KE +D+Q + F G NG S+ + Sbjct: 706 VYQEQVMQIAQKLAGYTLGQADILRKAMGKKKKEVLDQQFKGFRQGMIDNGYSEESIKAL 765 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++++ F+ Y FNK+H+AAY ++SY TA++K +YP E++AA +T DN ++ + + Sbjct: 766 WDVVVPFSAYAFNKAHSAAYGLVSYWTAFLKANYPTEYMAALLTSTKDNKDRRALYLAEC 825 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDF 868 R +I ++PP VN +F I + L AI+ VG I+ A+K F S +DF Sbjct: 826 RHMDITVLPPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVGTRAEKGRFASFQDF 885 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF- 927 +V N+R ++SL+ AGA D G++R LL D V++N ++F Sbjct: 886 LDKVPQVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFG 945 Query: 928 AHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 A ++G+ S + + + + E+ +LG Y S HPL + L + + YE Sbjct: 946 ALDEGSSSGTGLAVDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARH--QDYE 1003 Query: 985 ESVATIRGNN-------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +A + G+ +++A +V K T++G+ T + + + FFP Sbjct: 1004 --IAQVVGSEGAMADRIVKIAGLVSGVTTKVTKQGNAWAIATIEDLSGSVDVLFFP 1057 >gi|300741276|ref|ZP_07071297.1| DNA polymerase III, alpha subunit [Rothia dentocariosa M567] gi|300380461|gb|EFJ77023.1| DNA polymerase III, alpha subunit [Rothia dentocariosa M567] Length = 1180 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 373/998 (37%), Positives = 542/998 (54%), Gaps = 55/998 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F HL VH+ YS+L+GA L ++ ++A +D LF A +F ++A A I+P Sbjct: 5 GFAHLHVHTEYSMLDGAARLGDLFQYARELGMDSMATSDHGFLFGAFDFWRQAKANDIKP 64 Query: 70 IIGCQL------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 IIG + + D + G + + + T EG L S Sbjct: 65 IIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYT---HMTMWAETTEGMHNLFRASS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 L Q + R+ LQ ++GLI TG SG I Q A F+ + Sbjct: 122 VASLEGQLYKP-RMDREVLQTY-SKGLIATTGCPSGEIQTRLRLGQYQEAVAAAAEFRDI 179 Query: 178 FG-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 FG D Y + H G D R Q + +LA LP VATN+ + +ED+ AH L+ V Sbjct: 180 FGKDNFYCEVMDH-GLDIERNVQADLHRLAKELNLPFVATNDLHYTRQEDHTAHAALLCV 238 Query: 235 AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + ++ R + D+ YL++ EM IF D+P A ENT+EIA RC+ A +P Sbjct: 239 QSGSTLTDPKRFKFDADNFYLRSPEEMYQIFGDVPGACENTLEIAERCNVEFNTKANYMP 298 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F E ++ EE+ + GL R G K R++ ++E+ VI M F Sbjct: 299 NFPVPEGEN----EESWFVKEVERGLHYRFPNGVPDK------VREQAEYEVGVITSMGF 348 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD++PL L+FERFLNPDR+ Sbjct: 349 PGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLNPLNHDLIFERFLNPDRV 408 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFD+DF RR EVI YV KYG ++VAQI+TFG+++AK AL+D R + PYS + Sbjct: 409 SMPDFDVDFDDRRRAEVIDYVTEKYGEDKVAQIVTFGTIKAKQALKDASRVMDQPYSVGE 468 Query: 474 RLCKLIPNDP-AHPVSLQAI--ADDSRFREA----RLADPSVDRL----LEISQKLEGLY 522 RL K +P D ++L + +D R+ EA L + VD++ E ++ LEGL Sbjct: 469 RLTKAMPPDVMGKNIALANVYNPEDKRYSEAGDLRALIEDPVDKIYGEVFETAKGLEGLK 528 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ + L+ ++P+ R +TQF+ E GLIK DFLGL+ LT++ Sbjct: 529 RQWGVHAAGVIMSSKNLTDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTII 588 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +LD + RG+++DL + DD E+Y LL TLG+FQL+ MR L+ M+P+ E Sbjct: 589 SDALDNVKMNRGIEIDLENLEVDDKESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFE 648 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 I A+++LYRPGP+ ++ Y RKNGK++I IHP ++ L E T G+I+YQEQV Sbjct: 649 HISAVLALYRPGPMGANSHTNYALRKNGKQEIQPIHPELEEPLAEILDTTYGLIVYQEQV 708 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ E F G NG S+ ++++L Sbjct: 709 MAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYEAFHDGMISNGYSEGAVKALWDILLP 768 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 F+DY FNK+H AAY ++SY TA++K HYP E++AA +T DN +K+ + + R I Sbjct: 769 FSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGIT 828 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874 ++PP VN + F I + + AI+ VG ++ A +K F+S DF +V Sbjct: 829 VLPPDVNESTLTFAPVGKDIRFGMGAIRNVGANVVDGMIAAREEKGHFESFNDFLKKVPL 888 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932 N+R +ESL+ AGA D ++R L ++ A V++ ++F Sbjct: 889 VVCNKRTIESLIKAGAFDELKHTRRSLSLVHESAVDAAVSVKRKEAAGQFDLFGSLGMDD 948 Query: 933 TFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPL 968 D +++ + + R E+ +LG Y S HPL Sbjct: 949 ALGDDLSVTVPDIPDWERREKLNFEREMLGLYVSDHPL 986 >gi|194467803|ref|ZP_03073789.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23] gi|194452656|gb|EDX41554.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23] Length = 1115 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 370/1039 (35%), Positives = 560/1039 (53%), Gaps = 71/1039 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L V SSYSLL+ +++++ A+A+TD N L+ A+EF A AGI+PI Sbjct: 3 FTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +L + + + T+ K +V L GYQ L++L + L Q ++ + Sbjct: 63 LGLRLVVALNE----TDGTKL------DLVFLAKNQRGYQHLMDLST----LQQTRKDKK 108 Query: 131 ICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + L+ Q + E I++ P F S +LT GD V L Sbjct: 109 VPLTVTQISPLLDELFIII------PPQSTVF--SVLAQPTSILTELANLGDDDSVLLGV 160 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + D + + QL+ LPLV T+ +L+ D A VL A+ V KD P + Sbjct: 161 NSRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAI--DAGVELKD-PTI 217 Query: 249 TP----DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 HYL ++ ++V + L A + TVE+A C+ LQ AP+LP F + Sbjct: 218 EAGRRGQHYLYSKEQVVQDYKAKGLSAAAQKTVEVATLCNVELQFRAPVLPHFKNQAGIS 277 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 Q+ LR+ + GL+ R +A G Q Y++RL EL VI M F YFLIV D Sbjct: 278 SQQY----LRSLCIQGLKKR----RVAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWD 329 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 + +A + I PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R MPD D+D Sbjct: 330 VMNFAHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDI 389 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 +RRDEV++YV KYGH+RVAQIITFG+L AK +RDV R +P + RL +P+ Sbjct: 390 PDNRRDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHG 449 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 H A+ + + + +P L++++Q+LEGL RH S HAAGIV+ ++PL ++ Sbjct: 450 -LHVTLKDALKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEV 508 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+ +D L +TQF +E GL+K DFLGLK L+++ +L + Q DL I Sbjct: 509 VPL-QDGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNTLQMIRQEDPNFDLQKIN 567 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 F+D T L T GIFQ ESSG+R L + P EDI+A+ +LYRPGP++NI + Sbjct: 568 FNDSLTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENIPHFT 627 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK GKEKI P ++ +L T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K Sbjct: 628 ARKAGKEKIAYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKK 687 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 M+ + +FI+GA+++G S +A +FE + +FA+YGFN+SHA AY++++++ A++K H Sbjct: 688 ATMEDMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVH 747 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP F A M E N+EK+K+ DA+QF ++I P +N F + D +Y+ +AI Sbjct: 748 YPAAFFTALMNAET-NIEKLKRHVGDAKQFGVKISGPRINISESSFLLHDGTVYFGFSAI 806 Query: 843 KGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 KGV I+E + F L +F +R+ + + ++E L+++GA D GY+R ++ Sbjct: 807 KGVRRDFVAAILEERQENGKFTDLRNFITRIPERWQKQELIEPLIYSGAFDNMGYNRAEM 866 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRV 958 +D + K +E +FA F D N R E Sbjct: 867 ---IDALPKLISGIE---------LFAG-FANFDDPTLQTAIDQRNEFPLLTRLTKENEY 913 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT----RKGSR 1014 LG Y SGHP+ Y ++G + + +A + N+ A ++V KT R+ Sbjct: 914 LGVYLSGHPVTQY----YQLGQQLHATKIADLYPNS--EATIIVLTNHVKTIYTKREHRE 967 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + +V ++ + FP Sbjct: 968 MAFVNGTDETGAVDITVFP 986 >gi|87306887|ref|ZP_01089033.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645] gi|87290260|gb|EAQ82148.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645] Length = 1181 Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust. Identities = 353/983 (35%), Positives = 553/983 (56%), Gaps = 34/983 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+GA S+ ++ + A+AITD NL AL+F + AA I P+ Sbjct: 6 FVHLHCHTHYSLLDGAGSIPRLVGRAKDHGMNALAITDHGNLHGALQFYRACKAAEINPV 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I + + + + + LL G++ L++L S YL +G Sbjct: 66 IGYEAYIAPGSRFEKSGSQRD---SNYHLTLLAQNKIGFRNLVKLSSAAYL--EGFYFKP 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLT----FKKLFGDRLYVN 185 L E +EG+I L+G S + S++ EK F+++F DR ++ Sbjct: 121 RIDKELLEKYSEGIICLSGCVSSEFSKTILRGTSTEELEKEGANVASWFQRVFKDRYFIE 180 Query: 186 LQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + + G D R + V +A +PLVAT+++ ++ ++D EA DV++ + + Sbjct: 181 IMNN-GLDIQRMQLEGAVDIANKIGVPLVATSDTHYVDQDDAEAQDVMLCINTGKFRTDT 239 Query: 244 DRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R R+ D + L+++ +M + F L +A+ + EIA L++ P + Sbjct: 240 NRMRMENDQFFLRSQEQMYADFPRLEDAVARSQEIADTVDLDLELGKRHFPTYTLPP--- 296 Query: 303 IQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 +K + LR + GL+ R + + G ++ RLD EL VI+R+ F YFLIV Sbjct: 297 -EKTADGYLRELCIQGLKERYEGNEEMLPGGELSEVVMARLDRELGVISRLGFPNYFLIV 355 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DF+ A+K NIP RGSG G++ YAL ++ + P+++ LLFERFL+ +R+ PD DI Sbjct: 356 WDFVVEARKQNIPA-TARGSGVGAIVCYALYMSHVCPIKYDLLFERFLDENRLEAPDIDI 414 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF ++RR VIRYV++KYG + VAQI TFG+L A+AA++DVGRAL +P +V+ + ++P Sbjct: 415 DFDKERRGLVIRYVKDKYGEDNVAQIGTFGTLAARAAIKDVGRALGLPLDRVNAITGMVP 474 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + AI ++A D +L ++ K+EGL R+ THAA +VI DRPL+ Sbjct: 475 ETLGIKLK-TAIETSEELKQAYENDGEAREVLSLAMKIEGLARNVGTHAAAVVIADRPLT 533 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 + VP+ R + +TQ++M +E AGL+K DFLGL+ LT+L+ ++D + R G D+ Sbjct: 534 EYVPLCRVTGKEDLITQWSMNDVEDAGLLKMDFLGLRNLTILRNAIDLIETREGKPFDIH 593 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P DD ET+ LL T G+FQLES G+R L M+PD DIIA +LYRPGP++ + Sbjct: 594 KMPLDDEETFALLRRGETKGVFQLESGGIRDLLRRMKPDSFLDIIATNALYRPGPLEGGM 653 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V Y KNG++ HP+++ +L+ET GV++YQEQVM+I L L++A +A+ Sbjct: 654 VDEYIEVKNGRKAAEYKHPVLEKILEETNGVMVYQEQVMRILNQLGDIPLAKAYTCIKAI 713 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + + + +E+F+ GA + G++K A +E++ KFA YGFNKSH+ AYA+++YQTA Sbjct: 714 SKKKESLIQQNREQFMIGAVEKGLTKKEAEEFWEMIVKFAGYGFNKSHSTAYALVAYQTA 773 Query: 778 WMKTHYPVEFLAASMTLEMDN-----VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 ++KTHYP EF+AA ++ ++ + + + +D+ + I ++ P VNT V F V D Sbjct: 774 YLKTHYPKEFMAALLSGDISGRNFKTKDALVEHMEDSERMEIDVVAPDVNTSDVQFAVVD 833 Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +I ++L+AIKG G A I+ A D PF + DFC RVD+ + NR +E+L+ AGA Sbjct: 834 GKIPFALSAIKGCGGGAAEAIVAARRKDGPFTDIFDFCERVDASQCNRAAIETLIKAGAF 893 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENS 948 D +R QL LD + +R +N+FA G S + L N Sbjct: 894 DSMSTNRAQLSSVLDKAIQSGAAALADRKAGQKNLFAAMEEASGAASKAVKLPDVEEWNE 953 Query: 949 SVRFENEQRVLGFYFSGHPLDVY 971 + E+ VLGF+ + HPL Y Sbjct: 954 REKLLYEKEVLGFFLTSHPLAEY 976 >gi|331696645|ref|YP_004332884.1| DNA polymerase III subunit alpha [Pseudonocardia dioxanivorans CB1190] gi|326951334|gb|AEA25031.1| DNA polymerase III, alpha subunit [Pseudonocardia dioxanivorans CB1190] Length = 1185 Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust. Identities = 374/1075 (34%), Positives = 574/1075 (53%), Gaps = 72/1075 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ +S+L+GA L+++ + A PA+A+TD N++ A EF +KA AAG++P Sbjct: 8 SFVHLHTHTEFSMLDGAARLDDLFRESAKMGMPALAMTDHGNVYGAYEFWRKAKAAGVKP 67 Query: 70 IIGCQLDID---MQDNLKMTNQGKT-----PFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + + + T G+T P + LL EG L L S + Sbjct: 68 IIGMEGYLSPGSRHERKRATLGGQTVSDDNPGEMYTHMTLLAENTEGMHNLFRL-SSLAS 126 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180 L+ R+ L+ G +G+I TG SG + R + A + ++ +FG D Sbjct: 127 LEGYYYKPRMDRELLETYG-KGIIATTGCPSGEVARLLQQDRYDDACQAASDYRDIFGRD 185 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y L H ++ + + +L LP +ATN+ + ED + H+VL+ V Sbjct: 186 NFYCELMDHGIEIEKRVQEDLFRLKKELGLPGLATNDLHYTYAEDTKPHEVLLCVQTGKT 245 Query: 240 VSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIE 297 ++ +R + D YLK+ +EM + + + PEA +NT+ IA R ++PR Sbjct: 246 LADPNRFKFDAQDFYLKSAAEMRAQWDPIHPEACDNTLLIAERVDVSFTEGQDLMPRAPV 305 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E + EE+ L + GL R G + YR++ ++EL+VI +M F GYF Sbjct: 306 PEGE----TEESWLVKEVEKGLHRRFPNGV------TEQYRKQAEYELSVIIQMGFPGYF 355 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 ++ AD IQ AKK I GPGRGS AGS+ AY L ITD+DP++ L+FERFLNP+R+SMPD Sbjct: 356 IVTADLIQHAKKVGIRCGPGRGSAAGSLVAYVLGITDLDPIKHKLIFERFLNPERISMPD 415 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVDRL 475 D+DF + RR E+IRY KYG +R+AQIIT+ +++AKAA++D R L Q YS DR+ Sbjct: 416 IDMDFDERRRGEMIRYTTEKYGEDRIAQIITYSTIKAKAAIKDSARVLFGQPGYSVADRI 475 Query: 476 CKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 K +P DP H + ++ + R ADP V +++ ++ LEGL Sbjct: 476 TKAMPPAIMGKDIPLSGIFDPGH----KRYSEATEVRALYEADPQVREIIDTARGLEGLK 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ +PL ++P+ R +TQF+M E GL+K DFLGL+ LT++ Sbjct: 532 RQWGVHAAGVIMSSKPLLDVIPIQRREADGAIITQFDMGACETLGLLKMDFLGLRNLTII 591 Query: 583 QKSLDFLAQRGVKVDLSL--IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 +L+ + G K L + + DD +TY LL TLG+FQL+ MR L M P Sbjct: 592 DDALENIELNG-KPPLVIEDVELDDPKTYDLLARGDTLGVFQLDGGPMRDLLRRMAPTEF 650 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQ 694 +DI A+ +LYRPGP+ Y +RKN ++++ IHP L +P+ L ET G+I+YQEQ Sbjct: 651 DDISAVGALYRPGPMGANAHNDYADRKNKRQEVTPIHPELAEPLKDILGETYGLIVYQEQ 710 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM IAQ L+GY+L +AD+LRRAMGKK KE +DK+ E F G +G S ++++L Sbjct: 711 VMAIAQKLAGYTLGKADLLRRAMGKKKKEILDKEYEGFAQGMKDHGYSADAVKTLWDILL 770 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+DY FN++H+AAY V+SY TA++K +YP E++AA +T D+ +K + + R+ I Sbjct: 771 PFSDYAFNRAHSAAYGVVSYWTAYLKANYPAEYMAAVLTSVRDDKDKAAVYLAECRRMGI 830 Query: 815 QIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872 ++PP VN +F VGD+ I + L AI+ VG I+ A +K F DF +V Sbjct: 831 TVLPPDVNESVRNFAPVGDD-IRFGLGAIRNVGFNVVDAIVAARKEKGAFSDFSDFLRKV 889 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-- 930 D+ N++V+ESL+ AGA D G+SR LL + +K + ++F Sbjct: 890 DAVVCNKKVIESLIKAGAFDSLGHSRKGLLLVHADAIDAVMSTKKAASMGQFDLFGSMDG 949 Query: 931 ----------KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 G F K+ +++ ++ R E+ +LG Y SGHPL + +L Sbjct: 950 GDGDDSDPALAGIFDVKVPTDEWDTKH---RLAVEREMLGLYVSGHPLHGVEGVLAAKAD 1006 Query: 981 KGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + G+ + + ++ ++ + G + A E FFP Sbjct: 1007 TPIQNILDGTVGDGAQVTVGGILAGVNRRVNKNGEPWASAQIEDLAGGIEVLFFP 1061 >gi|283458361|ref|YP_003362984.1| DNA polymerase III subunit alpha [Rothia mucilaginosa DY-18] gi|283134399|dbj|BAI65164.1| DNA polymerase III, alpha subunit [Rothia mucilaginosa DY-18] Length = 1180 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 374/998 (37%), Positives = 548/998 (54%), Gaps = 57/998 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YS+L+GA L ++ ++A +D LF A +F ++A A I+PI Sbjct: 6 FTHLHVHTEYSMLDGAARLGDLFTYAKELGMKSMATSDHGFLFGAFDFWRQAKAHDIKPI 65 Query: 71 IGCQL------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IG + + D + G + + + T EG L S Sbjct: 66 IGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYT---HMTMWAETTEGMHNLFR-ASS 121 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 + L+ R+ LQ ++GLI TG SG + A + F+ +F Sbjct: 122 IASLEGQLYKPRMDREVLQTY-SKGLIATTGCPSGEVQTRLRLGQFDEAVQAASEFRDIF 180 Query: 179 G-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 G D Y + H G D R Q + +LA LP VATN+ + +ED+ AH L+ V Sbjct: 181 GKDNFYCEVMDH-GLDIERNVQEDLHRLAKKLNLPFVATNDLHYTRQEDHTAHAALLCVQ 239 Query: 236 HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 + ++ R + D+ YL++ EM ++F D+P A ENT+EIA RC+ A +P Sbjct: 240 SGSTLTDPKRFKFDADNFYLRSAEEMYALFGDIPGACENTLEIAERCNVEFNTKANYMPN 299 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F E ++ EE+ + GL R G K R++ ++E+ VI M F Sbjct: 300 FPVPEGEN----EESWFVKEVEKGLHYRFPDGVPDK------VRKQAEYEVGVITSMGFP 349 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD++PL L+FERFLNPDR+S Sbjct: 350 GYFLVVADFINWAKRNGIRVGPGRGSGAGSMVAYAMRITDLNPLDHDLIFERFLNPDRVS 409 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFD+DF RR EVI YV KYG E+VAQI+TFG+++AK AL+D R + PYS +R Sbjct: 410 MPDFDVDFDDRRRGEVIDYVTEKYGEEKVAQIVTFGTIKAKQALKDASRVMDQPYSVGER 469 Query: 475 LCKLIPNDP-AHPVSLQAI--ADDSRFREA----RLADPSVDRL----LEISQKLEGLYR 523 L K +P D ++L + +D R+ EA L D VD++ E ++ LEGL R Sbjct: 470 LTKAMPPDVMGKNIALANVYNEEDKRYAEAADLRALIDDPVDKIYGQVFETAKGLEGLKR 529 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+++ + L ++P+ R +TQF+ E GLIK DFLGL+ LT++ Sbjct: 530 QWGVHAAGVIMSSKDLVDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTIIS 589 Query: 584 KSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 +++ + A RG+ +DL +P DD E+Y LL TLG+FQL+ MR L+ M+P+ E Sbjct: 590 DAVENIKANRGIDLDLESLPLDDPESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFEH 649 Query: 643 IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVM 696 I A+++LYRPGP+ ++ Y RKNGK++I IHP ++ LK+ T G+I+YQEQVM Sbjct: 650 ISAVLALYRPGPMGANSHTNYALRKNGKQEIEPIHPELEEPLKDILDTTYGLIVYQEQVM 709 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ F G NG S+ ++++L F Sbjct: 710 AIAQKVANYTLGEADLLRRAMGKKKKAELDKQYATFHDGMISNGYSEGAIKALWDILLPF 769 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 +DY FNK+H AAY ++SY TA++K HYP E++AA +T DN +K+ + + R I + Sbjct: 770 SDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGITV 829 Query: 817 MPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874 + P VN + F VGD+ I + + AI+ VG ++ A +K ++S DF +V Sbjct: 830 LAPDVNESTLTFAPVGDD-IRFGMGAIRNVGANVVEGMIAAREEKGRYESFNDFLKKVPL 888 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932 + N+R +ESL+ AGA D G++R L + A V++ ++F Sbjct: 889 QVCNKRTIESLIKAGAFDDLGHTRRSLSLIHEAAVDAAVAVKRKEAAGQFDLFGSLGMDD 948 Query: 933 TFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPL 968 D++T+ V R E+ +LG Y S HPL Sbjct: 949 ALGDELTVTIPDVPEWDRREKLNFERDMLGLYVSDHPL 986 >gi|255034240|ref|YP_003084861.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053] gi|254946996|gb|ACT91696.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053] Length = 1216 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 357/1074 (33%), Positives = 570/1074 (53%), Gaps = 77/1074 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL H+ +SLL+GA + + K D PA+AITD N+F EF + GI+PI Sbjct: 3 FSHLHCHTQFSLLDGAADIKKLFKKAKEDNMPAVAITDHGNMFGVFEFVAEGNKQGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSV 129 +GC+ + +++ + K V LL++ E GY+ L+++ S ++ + Sbjct: 63 VGCEFYVVEDRHVRQFTKDKK---DVRHHQLLLAKDEIGYKNLVKMCSLGFIEGMYGKYP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI + + +GLI T I + + AE+ + LFGD YV LQRH Sbjct: 120 RIDKDLIVQY-HKGLIATTCCIGAIIPKTIIRQGEEAAEREFKWWLDLFGDDFYVELQRH 178 Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS------- 241 D+Y ++V ++ A + + ++ +N+S ++ +D+ AHD+L+ + S Sbjct: 179 DIRDQYIVNEVLIKFARKYNVKIICSNDSHYVDRDDWNAHDILLCINTGDKQSTPSAKDF 238 Query: 242 --QKDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 +K P+ Y K SEM+ +F+DLPE+L+NT EI + + +LP Sbjct: 239 DDEKGIPKGSRFAFYNDQFYFKKTSEMLQLFNDLPESLDNTNEIVDKIKTLDLRKDILLP 298 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEV--------RLAQGAIAKGYH--AQDYRQRLDF 343 F D+ + +E+ K +V L K Y + +RL+F Sbjct: 299 NF--PIPDEFKTHTLSEMVGKKELTADVLNQWEYLRHLTFEGARKKYDVVTPEIEERLNF 356 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL I M F GYFLIVADFI +K + +GPGRGS AGS AYA+ IT+IDP+++ LL Sbjct: 357 ELQTIRNMGFPGYFLIVADFIDAGRKMGVFIGPGRGSAAGSAVAYAIGITNIDPVKYDLL 416 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+SMPD D DF D R +VI YV KYG+ +VAQI+T+G++ AK+A++DV R Sbjct: 417 FERFLNPDRISMPDIDTDFDDDGRQKVIDYVVKKYGYNQVAQIVTYGTMAAKSAIKDVAR 476 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSL-----------------QAIADDS-----RFREA 501 + +P + L KL+P+ P + ++L + I+ D R R Sbjct: 477 VMDLPLPDANMLAKLVPDKPTYNMTLNRIFTAPLEGEGSLMKKEGISPDELENVKRMRAI 536 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 + + +L+ +++LEG R+ HAAGI+I L++++P+ SD +TQ+ K Sbjct: 537 AVGNDLQASVLQEARRLEGTVRNTGIHAAGIIIAPSDLTEIIPVSTSKDSDFLITQYQGK 596 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGI 620 IE AG+IK DFLGL+ L++++++L + G + + +P DD + + L T I Sbjct: 597 IIEDAGVIKMDFLGLRNLSIIKEALRMIKNNYGHDIVIDDVPLDDPKVFELFQRGETNAI 656 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ ES GM++ + + PD E +IA+ +LYRPGPI I + RKNG+E++ P ++ Sbjct: 657 FQFESDGMKKYMRDLIPDRFEHLIAMNALYRPGPIAYIPNFIRRKNGQEEVTYDLPELEE 716 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 L +T G+ +YQEQVM ++Q L+G++ +AD LR+AMGKK E ++K K F+ G ++ G Sbjct: 717 YLADTYGITVYQEQVMLLSQKLAGFTKGQADTLRKAMGKKQIETLNKLKGDFMKGGTEKG 776 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 + I+ FA Y FNKSH+ YA ++YQTA++K HYP E++AA +T + +++ Sbjct: 777 LDAKKLEKIWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLTSSLGSID 836 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD 859 KI F ++ + ++ ++ P +N F V I + LA +KG G I+E A Sbjct: 837 KITFFMEECKNLSLPVLGPDINESERQFSVNKKGEIRFGLAGVKGSGDAAVESIIEERAK 896 Query: 860 -KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------LDNIQ 909 PF + DF +RV+ + +N++ LESL +AGA DCF Y R Q + ++ + Sbjct: 897 GGPFKDVFDFMTRVNLRTVNKKTLESLAYAGAFDCFTDYHRAQYFTAEQGENGTFIEKLI 956 Query: 910 KYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA +++ ++F + G+ K + + EQ V+GFY SGHP Sbjct: 957 RYANNYHAEKSSAQASLFGMLGDSGSTLAKPKAADIGPWDDLAKLRYEQEVVGFYISGHP 1016 Query: 968 LDVYKP--------ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 LD ++ L K+ E G +I +A +V S Q++ ++ GS Sbjct: 1017 LDTFRAELDNFCNCTLDKVMEINEGERAPKYYGKDINVAGIVTSAQERMSKNGS 1070 >gi|284035464|ref|YP_003385394.1| DNA polymerase III subunit alpha [Spirosoma linguale DSM 74] gi|283814757|gb|ADB36595.1| DNA polymerase III, alpha subunit [Spirosoma linguale DSM 74] Length = 1205 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 367/1083 (33%), Positives = 568/1083 (52%), Gaps = 105/1083 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL H+ YSLL+G + ++ K AD PA+AITD N+F EF +A GI+PI Sbjct: 3 FSHLHCHTQYSLLDGQADIKKLIKKAKADNMPAVAITDHGNMFGVFEFVAEASKQGIKPI 62 Query: 71 IGCQLDIDMQDNLK--MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +GC+ + ++D+ K T + K +LL A+GY+ L +L S Y+ + Sbjct: 63 VGCEFYV-VEDHHKKQFTKEQKD---VRYHQLLLAKNAQGYKNLAKLCSLGYMEGLYGKY 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ + + EGLI T + + + E + FG+ YV LQR Sbjct: 119 PRVTKELIDQY-KEGLIASTCCIGASVPKTILKKGEEAGEIEFKWWLDRFGEDYYVELQR 177 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV---AHSTVVSQKD 244 H D+ + ++V ++ A + + ++A+N+S ++ ++D+ AHD+L+ V + S KD Sbjct: 178 HEIPDQIKANEVLIKFARKYNVKIIASNDSHYVDQDDWVAHDILLCVNTNEKQSTPSMKD 237 Query: 245 ------RPRVT------PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 P+ T Y KN EM ++F DLPEA++NT EI + + +L Sbjct: 238 FSDDDVMPKNTRFAFFSDQFYFKNTQEMTTLFKDLPEAIDNTNEIVGKVETLKLKRDIML 297 Query: 293 PRF-----IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 P F ++ DD+ + E LR+ G + R H Q +RLDFEL Sbjct: 298 PNFPIPKEFQQHTDDVLNQWEY-LRHLTYEGAKERYVDILP----HIQ---ERLDFELFT 349 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I M F+GYFLIVADFI+ + + +GPGRGS AGS AY IT+IDP+++ LLFERF Sbjct: 350 IRTMGFAGYFLIVADFIKAGRDLGVMIGPGRGSAAGSAVAYCTGITNIDPIKYDLLFERF 409 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNPDR SMPD D DF + R +VI YV KYG +VAQI+T+G++ +K++++DV R + + Sbjct: 410 LNPDRKSMPDIDTDFDDEGRQKVIDYVVQKYGKAQVAQIVTYGTMASKSSIKDVARVMDL 469 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADD--------------------SRFREARLADPS 507 P + + KL+P+ P + ++L+ I +D R R D S Sbjct: 470 PLQDANAVVKLVPDKPTYNMTLKRIFEDPIDGPGGLSSVIQPDEVENVKRMRALEAGDKS 529 Query: 508 ------------VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 V +L+ ++KLEG R+ HAAGI+I LS +VP+ ++L + Sbjct: 530 AAQAMRIVDFEKVSAVLKQARKLEGTVRNTGLHAAGIIIAPSDLSDIVPVSTSKDTNLII 589 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTT 614 TQ+ K IE AG+IK DFLGL+ LT++++ L + Q V + + IP DD ETY L Sbjct: 590 TQYEGKVIEDAGVIKMDFLGLRNLTIIKECLRLIKQNHDVTIAIDDIPLDDEETYKLFQR 649 Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674 T +FQ ES GM++ ++ ++PD D+IA+ +LYRPGPI I Y NRK+G+E++ Sbjct: 650 GETNAVFQFESDGMKKHMKDLKPDRFGDLIAMNALYRPGPIAYIPNYINRKHGREEVKYD 709 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 P ++ L +T G+ +YQEQ+M ++Q L ++ +ADVLR+AMGKK K +DK K +F+ Sbjct: 710 MPEMEEYLADTYGITVYQEQLMLLSQKLGNFTKGDADVLRKAMGKKDKATLDKMKGKFMD 769 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 G + N + + ++ FA Y FNKSH+ YA ++YQTA++K HY E++AA +T Sbjct: 770 GCAANNLPLKVCEKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYTSEYMAAVLTS 829 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI 853 + ++KI F ++ + + ++ P VN F V I + L IKG G I Sbjct: 830 CLGTIDKITFFMEECKNLGLPLLGPDVNESERFFGVNKKGEIRFGLGGIKGAGDAAVEAI 889 Query: 854 MEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS------- 904 +E A P+ + DF RV+ + +N++ ESL +AGA D Y R Q + Sbjct: 890 IEERKAGGPYKDIFDFAVRVNLRTVNKKTWESLAYAGAFDSIDEYHRAQYFEMAEGDTSP 949 Query: 905 -LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE---------NSSVRFEN 954 LD + +YA N H A ++ F + E N + + Sbjct: 950 FLDKVIRYA-------NNYHAEKAAAQQSLFGAMMNGEPMIARPKPPIVTEWNQIEKLKY 1002 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYE----ESVATIRGNNIRLAAMVVSKQQKKTR 1010 E+ V+GFY +GHPLD + K+ + G+ + + R I++A +V S Q K + Sbjct: 1003 EKDVVGFYITGHPLDEF-----KLELDGFCNCTLDKIYETRQPEIKVAGIVSSMQTKIAK 1057 Query: 1011 KGS 1013 G+ Sbjct: 1058 NGN 1060 >gi|88856521|ref|ZP_01131178.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1] gi|88814175|gb|EAR24040.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1] Length = 1174 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 386/1067 (36%), Positives = 582/1067 (54%), Gaps = 57/1067 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 + + SFVHL VHS YS+L+GA + +LD PAIAITD N+F A +F + A A Sbjct: 5 DNNDSFVHLHVHSEYSMLDGAARVGPLLDAAVEQGMPAIAITDHGNMFGAYDFWKSATAR 64 Query: 66 GIQPIIGCQLDID----MQDNLKMTNQGK-------TPFPTVPSIVLLVSTAEGYQRLIE 114 GI+PIIG + I D ++ G + LL EG L Sbjct: 65 GIKPIIGTEAYITPGTARGDKTRVRWGGSHQTRDDVGGSGAYTHMTLLSQNNEGMHNLFR 124 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 + S+ + + R+ L + ++G+I TG G + A + F Sbjct: 125 MSSKASI-EGFYFKPRMDRELLSQY-SKGIIATTGCVGGEVQTKLRLGLYDEARQAAADF 182 Query: 175 KKLFG-DRLYVNLQRHRGYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + +FG + + + H G D R + +++LA ++PL+ATN+ + D AH L Sbjct: 183 QDIFGKENFFAEIMDH-GIDIERRTILDLIKLAKELDMPLLATNDLHYTHSHDATAHAAL 241 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + V ++ + +R + + + YLK+ +EM S+F + PEA +NT+ IA RC + Sbjct: 242 LCVQSASTLDDPNRFKFDSNEFYLKSAAEMRSLFREHPEACDNTLLIAERCEVSFEGR-D 300 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVA-GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 ++PRF E E E K VA G+ R A + + AQ +E++VI Sbjct: 301 LMPRFPVPEG-----ETEATWFEKEVAKGMNKRF-NNAPSDAHLAQ-----AKYEVDVIQ 349 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFL+VADFI+WAK I VGPGRGS AGS+ +YA+ IT++DPL L+FERFLN Sbjct: 350 QMGFPGYFLVVADFIEWAKAQGIRVGPGRGSAAGSMASYAVGITELDPLAHGLIFERFLN 409 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD D+DF RR EVIRYV KYG +RVAQI+T+G+++AK AL+D R L MPY Sbjct: 410 PERVSMPDVDVDFDDRRRGEVIRYVTEKYGDDRVAQIVTYGTIKAKQALKDSARVLGMPY 469 Query: 470 SQVDRLCKLIPNDPA---HPVSLQAI--ADDSRFREAR------LADPSVDRLLEISQKL 518 S ++L K +P PA +SL + D R++EA D ++ + + L Sbjct: 470 SVGEKLTKAMP--PAIMGKDISLHDVRNKDAPRYKEAADIRGIVDTDAEAAKVFDTAVGL 527 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R HAAG+V+ PL ++P+ R +TQF+ +E GLIK DFLGL+ Sbjct: 528 EGLKRQWGVHAAGVVLSAEPLLDVLPIMRREDDGAIITQFDQPPLESLGLIKMDFLGLRN 587 Query: 579 LTLLQKSLDFL-AQRGVKVDLSLIPFD-DHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT+++ +L + A G + + + D D +TY LL TLG+FQL+ MR L+ ++ Sbjct: 588 LTVIEDALTMIKANTGSPLVIEDLDLDADQKTYDLLARGDTLGVFQLDGGPMRALLKQLK 647 Query: 637 PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690 P EDI A+++LYRPGP +++ Y RKNG E I +IHP ++ LKE T G+I+ Sbjct: 648 PTNFEDISAVIALYRPGPMGMNSHTKYALRKNGLEDIDAIHPELEEPLKEILGTTFGLIV 707 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM +AQ ++G++L +ADVLRRAMGKK KEE+DKQ F SG +NG SK ++ Sbjct: 708 YQEQVMSVAQKVAGFTLGQADVLRRAMGKKKKEELDKQFIGFESGMLENGFSKEAVKVLW 767 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 E L FADY FNK+H+A Y V+SY TA++K +YP E++AA +T D+ +K+ + + R Sbjct: 768 ETLMPFADYAFNKAHSAGYGVLSYWTAYLKANYPAEYMAALLTSVGDSKDKLGMYLSECR 827 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFC 869 + I+++ P VN V+F I + L A++ VG + I+ A +K F+S D+ Sbjct: 828 RMGIKVLAPDVNESTVNFTAVSGDIRFGLGAVRNVGASVVEQIVRARTEKGRFESFHDYL 887 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +V + N+R +ESL+ +GA D G +R LL+ ++ A +++N N ++F Sbjct: 888 RKVSIQVANKRTVESLIKSGAFDSLGATRRGLLEIHEDACDSAVSLKRNEANGQVDLFGG 947 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988 D + + + + E+ +LG Y S HPL + L K E ++ Sbjct: 948 IFDFDGDDDGVPERPEWSKRDKLAFEREMLGLYVSDHPLSGLELQLAKHQDATITEVLSG 1007 Query: 989 --TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 G+++ +A +V S Q + R G++ G VT + E F Sbjct: 1008 DVVADGDHVSIAGLVTSVQHRVARNSGNQYGIVTVEDFGGEISVMFL 1054 >gi|325962960|ref|YP_004240866.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans Sphe3] gi|323469047|gb|ADX72732.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans Sphe3] Length = 1185 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 377/1052 (35%), Positives = 550/1052 (52%), Gaps = 76/1052 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA L + D+ PA+A TD LF A +F +KA GI+P Sbjct: 7 SFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWKKATDKGIKP 66 Query: 70 IIGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 IIG + + + Q ++ G + + LL G + L Sbjct: 67 IIGVEAYVTPGTARGDKSRVRWGEEHQRKDDISGGG-----SYTHMTLLSYNNAGMRNLF 121 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 S L + R+ L +EGLI TG SG I + A + Sbjct: 122 RASSIASLDAVFGKWPRLDRELLNTY-SEGLIATTGCPSGEIQTRLRLGQYREALEAAAE 180 Query: 174 FKKLFGDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 F+ +FG Y G D R +++LA LPLVATN+ + E D +AH+ L Sbjct: 181 FRDIFGAENYFCELMDHGLDIERRVTGDLLRLAKDLNLPLVATNDLHYTHEHDAKAHEAL 240 Query: 232 MAVAHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284 +A+ + + + +YLK+ EM +F D P+A +NT+ IA RC Sbjct: 241 LAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPDACDNTLLIAERCEVS 300 Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 A +PRF +D E + L + GLE R G + R + D+E Sbjct: 301 FNTGANYMPRFPCPPGED----ETSWLVKEVAKGLEYRYPGGV------PDNVRAQADYE 350 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 L VI M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPLR L+F Sbjct: 351 LGVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLRHGLIF 410 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNPDR+SMPDFD+DF RR EVI YV KYG ERVA I+T+G+++ K AL+D R Sbjct: 411 ERFLNPDRVSMPDFDVDFDDRRRPEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSRV 470 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-----------DSRFREARLADPSVDRLLE 513 L P+S ++L K +P PA +AD FR+ DP ++ E Sbjct: 471 LGYPFSMGEQLTKALP--PAVMAKDIPLADIQNPEAKRYGEAGDFRQLISTDPEAAKVFE 528 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 + +EGL R HAAG+++ P+ ++P+ R ++ +TQF+ E GLIK DF Sbjct: 529 TALGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRIQDGQVITQFDYPTCEGLGLIKMDF 588 Query: 574 LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ LT++ +L+ + RG+ +DL + DD +Y LL TLG+FQL+ MR L Sbjct: 589 LGLRNLTIISDALENIKLNRGIDLDLENLELDDAPSYELLARGDTLGVFQLDGGPMRSLL 648 Query: 633 EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQ 686 + M+PD EDI A+++LYRPGP+ + Y RKNG + ++ IHP ++ L E T Sbjct: 649 KLMKPDNFEDISAVLALYRPGPMGANAHTDYALRKNGIQPVIPIHPELEEPLSEILGGTY 708 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ F G NG S Sbjct: 709 GLIVYQEQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMEAV 768 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 ++++L F+DY FNK+H+AAY VISY TA++K HY E++AA +T D+ +K + Sbjct: 769 KTLWDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYL 828 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSL 865 + R+ I ++PP VN ++F N I + + AI+ VG ++ A ++ F S Sbjct: 829 NECRRMGITVLPPDVNESALNFTPVGNDIRFGMGAIRNVGVNVVEAMVAARESEGAFTSF 888 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 +D+ +V + N+R +ESL+ +GA D G+ R L + +++N + Sbjct: 889 KDYLMKVPAVVCNKRTIESLIKSGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFD 948 Query: 926 IFA---HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 +FA + S I + + E+ +LG Y S HPL + +L + Sbjct: 949 LFAGFEEAESESSLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGLLSQHA--- 1005 Query: 983 YEESVATIRGNN-------IRLAAMVVSKQQK 1007 E S+ ++ G + I +A M+ S ++ Sbjct: 1006 -EMSITSVLGEDGPQDGAIITIAGMITSLSRR 1036 >gi|256423694|ref|YP_003124347.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588] gi|256038602|gb|ACU62146.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588] Length = 1214 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 363/1102 (32%), Positives = 569/1102 (51%), Gaps = 109/1102 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65 F HL VH+ YSLL+GA + ++ K A QPA+AITD N+F A +F +A Sbjct: 3 FSHLHVHTQYSLLDGAADIKSLYKKAMASNQPALAITDHGNMFGAFQFVAEAYNNRLNPE 62 Query: 66 -------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLI 113 ++PI+GC+ + + N+ K F VLL EGY+ LI Sbjct: 63 DPKDKRLKVKPIVGCEFYV-------VENRFKRAFTREEKDIRNHQVLLAKNDEGYRNLI 115 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +L S Y+ + RI + + +GLI T + RA + E+ Sbjct: 116 KLCSLGYIEGLYGKYPRIDKELILQY-HKGLIATTCCLGASVPRAILKKGEEAGEEEFKW 174 Query: 174 FKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG+ YV LQRH ++ + ++ +++ A H + ++A+N+S ++ + D AHD+L+ Sbjct: 175 WLDIFGEDYYVELQRHGIPEQEKVNESLIKFASKHNVKIIASNDSHYVDQADANAHDILL 234 Query: 233 AVAHSTVVSQKDRPRVTPDH---------------YLKNRSEMVSIFSDLPEALENTVEI 277 + S + D Y K EM ++F DLP+A++NT EI Sbjct: 235 CINTGEKKSTPTMKDFSDDDVSMKNKRFAFYNDQFYFKTTEEMTALFQDLPQAIDNTNEI 294 Query: 278 ARRCSF------ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331 + IL + PI P F+ ++ LR+ + G + A+ Sbjct: 295 VDKVELLDLKRDILLPNFPIPPPFLT---------QDQYLRHITMEGAHKKYAEVT---- 341 Query: 332 YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391 + +R++FEL+VI M F+GYFLIV+DFI+ + + +GPGRGS AGS AY + Sbjct: 342 ---AEVEERINFELSVIENMGFAGYFLIVSDFIKAGRDLGVFIGPGRGSAAGSAVAYCIG 398 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT+IDP++++LLFERFLNP+R SMPD D DF + R +VI YV NKYG +VAQIIT+G+ Sbjct: 399 ITNIDPIKYNLLFERFLNPERKSMPDIDTDFDDEGRQKVIDYVVNKYGKNQVAQIITYGT 458 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA---------------------HPVSLQ 490 + AK +++DV R + +P + + L K++P+ P + + Sbjct: 459 MAAKMSIKDVARVMDLPLVESNMLAKMVPDKPGIQLDRIFNAPIDEGEKSLAEKEGLGPE 518 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + + R RE +L + LEG R+ HAAGI+I + L L+P+ Sbjct: 519 DLENVKRLRELIKGQDLQGEVLREACVLEGSVRNTGIHAAGIIIAPKDLYDLIPVSTAKD 578 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609 SDL VTQF IE AG+IK DFLGLKTLT+++ +L+ + G+ + + IP DD +TY Sbjct: 579 SDLLVTQFEGSIIESAGVIKMDFLGLKTLTIIKGALELIRTNHGIDISIDDIPLDDAKTY 638 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T FQ ES+GM++ L ++PD +D+IA+ +LYRPGP++ I ++ RK+G E Sbjct: 639 ELYQKGETNATFQFESAGMQKYLRELKPDRFDDLIAMNALYRPGPLEYIPLFIRRKHGLE 698 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + V ++ L +T G+ +YQEQVM ++Q L+ +S +ADVLR+AMGKK K +DK K Sbjct: 699 ETVYDLAEMEEYLNDTYGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKKQKAVLDKMK 758 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 ++F+ G + NG + ++ FA Y FNKSH+ YA ++YQTA++K HYP E++A Sbjct: 759 KQFMEGCAANGHDLKVCDKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMA 818 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTT 848 A + N+EKI F ++A++ I ++PP VN F V +I + LA +KGVG Sbjct: 819 AVLN-NASNIEKITFFMEEAKRMGIDVLPPDVNESFKGFAVNKQGQIRFGLAGLKGVGEA 877 Query: 849 TARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ--- 903 +I+E + ++ + RV+ + +N++ LE+L +GA DCF R Q Sbjct: 878 AVENILEERQKGSNYKNIFEMIKRVNQRAVNKKSLEALAMSGAFDCFPELHRAQYFHKPD 937 Query: 904 -----SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 LD I K+ Q V ++F + + + ++ NE+ V Sbjct: 938 NDNTTGLDKIVKFGQQVSAGAATTMSSLFGADDMPEVEPPKIPPCDPWPLILKLNNEREV 997 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESV------------ATIRGNNIRLAAMVVSKQQ 1006 G Y SGHPLD Y+ R + +E V + R N RLA V Q+ Sbjct: 998 TGIYISGHPLDDYRFESRYYNMNTVQELVEYQADLQAPGNAKSGRERNFRLAVYVTGAQE 1057 Query: 1007 KKTRKGSRIGWVTFSEPAKEYE 1028 + +R + G +T + + ++E Sbjct: 1058 RISRNNRQFGIMTIEDYSGKFE 1079 >gi|288800747|ref|ZP_06406204.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332208|gb|EFC70689.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 1236 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 373/1101 (33%), Positives = 588/1101 (53%), Gaps = 94/1101 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------SQKAC 63 FVHL VH+ YS+L+G ++ ++DK + +AITD N+F EF + K Sbjct: 4 FVHLHVHTYYSILDGQSNIQKLVDKAINNGMRGLAITDHGNMFGIKEFYNYCNKVNGKRK 63 Query: 64 AAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 G+ +PI+GC++ + N K + + +++L +GY+ LI+LVSR + Sbjct: 64 EEGLPPFKPILGCEMYV--ARNKKESKIKENGDMGGKHLIVLAKNFQGYKNLIKLVSRSW 121 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + D R L+ EGLI+ + +G + + A + FK++FGD Sbjct: 122 V-DGFYMRPRTDHEDLERY-HEGLIVCSACIAGEVPSKVLKGDYEGAREAARWFKRVFGD 179 Query: 181 RLYVNLQRHRGYDRYRESQ-------------VVQLAYTHELPLVATNNSLFLSEEDYEA 227 Y+ LQRH D + + ++++A ++ +V TN+ F+ ++D EA Sbjct: 180 DYYLELQRHEVKDPSQRANRQTYPLQQKANKALLEIAKELDIKVVCTNDVHFIEKDDAEA 239 Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 HD L+ ++ + ++ +R T + K++ EM +F DLPEA++NT EI + Sbjct: 240 HDHLICLSTNKDLNDPNRLLYTKQEWFKSKEEMNEVFGDLPEAMQNTCEILDKIELYSID 299 Query: 288 HAPILPRF-------IEKEC------DDIQKE-------------EENELRNKAVAGLEV 321 HAPI+P + E++ +D+ KE EE + + + + G+E Sbjct: 300 HAPIMPFYPIPEDFGTEEDLRSSISEEDLFKEFTSDENGQNPLPLEEGKKKIEKLGGIEK 359 Query: 322 ------------RLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 +LA K Y + +R+ FEL+++ M F GYFLIV DFI Sbjct: 360 LYRVKFEADYLGKLAYDGAKKLYGEPLTDEVDERIKFELHIMKTMGFPGYFLIVQDFINT 419 Query: 367 AKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 A+ + VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD D DF D Sbjct: 420 ARNELGVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDD 479 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 R V+ +V+NKYGHE A IIT+G++ K +L+DV R ++P Q + LCK IP+ + Sbjct: 480 GRGLVLEWVENKYGHENCAHIITYGTMATKNSLKDVARVERVPLDQANYLCKSIPDKLPN 539 Query: 486 PVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + A+A ++A + D V ++ ++KLEG R HA G +I P+S Sbjct: 540 DLKMNLTNAVASIPELKQAEESPDEKVRNTIKYAKKLEGTVRGTGVHACGFIICRDPISD 599 Query: 542 LVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVK 595 VP+ D L TQ++ IE GLIK DFLGLKTL++L++++D + +G+K Sbjct: 600 WVPISIAEDKTDPGHKLRCTQYDGHVIEDTGLIKMDFLGLKTLSILKEAVDNIQFTKGIK 659 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +DL IP DD TY L + T+G FQ ES GM++ L +QP ED+IA+ +LYRPGP+ Sbjct: 660 IDLDNIPIDDALTYELYSAGKTIGTFQFESPGMQKHLRSLQPTVFEDLIAMNALYRPGPM 719 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK KI P ++ LK+T G+ +YQEQVM +A+ L+G++ ++D LR+ Sbjct: 720 DYIPDFIERKKDPSKIQYDIPCMEKYLKDTYGITVYQEQVMLLARQLAGFTRGQSDTLRK 779 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK+ +MDK + F G KNG + + I+E KFA Y FNKSHA Y+ +S+Q Sbjct: 780 AMGKKLIAQMDKLETLFYEGGVKNGHDQKVLNKIWEDWKKFASYAFNKSHATCYSWVSFQ 839 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNR 834 TA++K HYP E++AA ++ ++N+ ++ KF + R I+++ P VN F D Sbjct: 840 TAYLKAHYPAEYMAAVLSRNLNNITEVIKFIDECRALGIKVLGPDVNESRQKFSANKDGI 899 Query: 835 IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+AIKG+G A+ I+E + + P+ ++ DF RV+ +N++ LE L +GALD Sbjct: 900 IRFGLSAIKGMGDAAAQSIVEERTKNGPYKNIYDFIERVNINAVNKKALELLALSGALDG 959 Query: 894 FG-YSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 F R Q L +D + +Y Q + + ++F + T ++ Sbjct: 960 FKELKREQYLTKNIKGEPFIDLLVRYGQRYQSEQNQSQNSLFGGDDAAEIPHPTPPEWE- 1018 Query: 946 ENSSVRFENEQR-VLGFYFSGHPLDVYKPILRKMGIKGYEE---SVATIRGNNIRLAAMV 1001 E S + N +R +G Y S HPLD + ++ + E ++A N+ L +V Sbjct: 1019 EWSHIELLNRERDCIGIYLSAHPLDEFSMVINNLCNANCNELADNLALASKENVALGGIV 1078 Query: 1002 VSKQQKKTRKGSRIGWVTFSE 1022 + + T+KG G+VT + Sbjct: 1079 TLSEARTTKKGLPCGFVTIED 1099 >gi|283783561|ref|YP_003374315.1| DNA polymerase III subunit alpha [Gardnerella vaginalis 409-05] gi|283441761|gb|ADB14227.1| DNA polymerase III subunit alpha [Gardnerella vaginalis 409-05] Length = 1188 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 365/1075 (33%), Positives = 575/1075 (53%), Gaps = 69/1075 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL H+ YSLL+GA + +++ + PA+AITD N+ A E A AGI+P Sbjct: 7 NFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKP 66 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQRLIELV 116 IIG + + + + ++ + + T + + L G L++ Sbjct: 67 IIGIEAYVTPETARQ--DKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNLLKAS 124 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S L + + R+ L ++G+I +G SG I + A + F+ Sbjct: 125 SVANLEGRVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAGEFQD 183 Query: 177 LFG-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FG D ++ L H R ++ ++++A PL+ATN+ ++ EED EA D ++ + Sbjct: 184 IFGRDNFFIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAMLCI 243 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--VHAPI 291 + + DR + +YLK+ +M +F + PEA +NT+EIARRC+ + Sbjct: 244 NSGSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAF 303 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P+F +C + E L+ K GLE R + ++ D+E VI +M Sbjct: 304 MPQF---DCPEGWDETSLFLK-KVEEGLERRYNNNI------PMEVLKQADYECGVICQM 353 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 +F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ L+FERFLNP+ Sbjct: 354 QFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPE 413 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+S+PD D+DF D R +V+ YV KYG ++VAQ + +G+++ K AL+D R + +S Sbjct: 414 RVSLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 473 Query: 472 VDRLCKLIPNDPA---HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520 +++ K++P PA +SL I D+ FRE DP R+ E ++ +EG Sbjct: 474 GEKITKVLP--PAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEG 531 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTL 579 L R HA ++G P++ P+ R+D + T F E GL+K DFLGL L Sbjct: 532 LIRQTGVHACATIMGSEPITNTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNL 589 Query: 580 TLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T+++ +L + G +D + IP DD TY LL+ TLG+FQL+S GMR L ++PD Sbjct: 590 TVIRDTLRNIENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPD 649 Query: 639 CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM---LKETQGVIIYQ 692 DI AL++LYRPGP +D+ Y RKNG + I+ IHP + +P+ L ET G+I+YQ Sbjct: 650 NFNDISALIALYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQ 709 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQV A++L+GYSL +ADVLRRAMGKK E + K++ F G +G S+ A ++++ Sbjct: 710 EQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDV 769 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + E N +K + +AR+ Sbjct: 770 LVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRM 829 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKP-FDSLEDFCS 870 IQ++ P VN +++ + + + L AI+ VG I+ E ++ F + DF Sbjct: 830 GIQVLQPDVNESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQ 889 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-- 928 RV LNRR++ESL+ AGA D +R L Q D +++ + ++FA Sbjct: 890 RVPISALNRRLVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADL 949 Query: 929 -------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKM 978 + G +IT+ + + E+ +LG Y S HPL + LR+M Sbjct: 950 DSSSDSDDDNGMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREM 1009 Query: 979 GIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + T+ G + +A +V S ++ +RKG+ VT + + FF Sbjct: 1010 SIAQLIDRARTMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1064 >gi|224476792|ref|YP_002634398.1| DNA polymerase III subunit alpha [Staphylococcus carnosus subsp. carnosus TM300] gi|222421399|emb|CAL28213.1| DNA polymerase III alpha subunit [Staphylococcus carnosus subsp. carnosus TM300] Length = 1067 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 357/1026 (34%), Positives = 561/1026 (54%), Gaps = 84/1026 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H++Y LL +L + +I+ K + +AITDTN L + +F + AGI+P+ G Sbjct: 4 HLNIHTAYDLLNSSLKVPDIIQKAVQEGYETLAITDTNVLHAVPQFYDASIKAGIKPVFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I + D L T VLL G + L +L S + + ++ Sbjct: 64 --MTIYLSDGL-----------TELETVLLAKNEAGLKSLYQLSSAIKV----QEKYATP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH--R 190 + WL+ + + ++ FK + ++L NL H + Sbjct: 107 IEWLK---------------------------KYQDNLVIIFKNVTSEQL--NLVHHFEK 137 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D Y + Q A +L +V + +L+ ED + L A+ + + + Sbjct: 138 HPDLYVDHQSSGAAERLDLNMVYMQEARYLNAEDADTLSALNAIKDNQTIDLVNTGSNHH 197 Query: 251 DH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 H Y +N + + +D+ +ENT +A C+ ++ H P+LP++ + + K Sbjct: 198 AHFYTQNEVNDLGLSADV---IENTETLAELCTTEIEYHQPLLPQY-QTPDNSSSKTYLW 253 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L +++ +E +Q YR+RL++E N+I M + YFLIV+D I +AK Sbjct: 254 HLLEQSLEKMEFDQSQ-----------YRERLEYEFNIITEMGYEDYFLIVSDLIHYAKT 302 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +N+ VGPGRGS AGS+ +Y L IT IDPLR++LLFERFLNP+R++MPD DIDF RR++ Sbjct: 303 HNVMVGPGRGSSAGSLVSYLLNITTIDPLRYNLLFERFLNPERVTMPDIDIDFEDTRREK 362 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+YVQ KYG V+ I+TFG L AKA RDVGR + S + + KLIP+ ++L Sbjct: 363 VIQYVQEKYGDYHVSGIVTFGHLLAKAVARDVGRIMGFEESTLSEISKLIPSKLG--ITL 420 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 + F+E + ++ E+S+KLEGL RH STHAAGI+I DRPL + VP++ Sbjct: 421 SEAYQNESFKEFVHRNHRHEKWFELSKKLEGLPRHTSTHAAGIIINDRPLYEHVPLFMGD 480 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608 L TQ+ M EK GL+K DFLGLK L+++ + +D + + V +D+ IPFDD + Sbjct: 481 TGLL--TQWTMTEDEKLGLLKIDFLGLKNLSIIHQIIDQVKKDLNVSIDIEAIPFDDPKV 538 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + +L+ T G+FQLES G+RQAL+ +QP EDI+A+ SLYRPGP++ I Y R++ Sbjct: 539 FEMLSRGDTTGLFQLESDGVRQALKRLQPQHFEDIVAMTSLYRPGPMEEIPTYITRRHVP 598 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 K+ +HP ++P+LK T GVIIYQEQ+MQIA +G+S EAD+LRRAM KK + ++ + Sbjct: 599 SKVQYLHPDLEPILKNTYGVIIYQEQIMQIASKFAGFSYGEADILRRAMSKKNRAMLENE 658 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 ++ F+ GA++NG S+ ++ IF+L+ KFADYGF ++HA +Y+ I+Y A++K HYP F Sbjct: 659 RQHFVDGANQNGYSEQLSKQIFDLILKFADYGFPRAHAVSYSKIAYTMAYLKVHYPNYFY 718 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 A +T + N +K + +A+ N++I+PP +N ++ IY SL A+KGVG Sbjct: 719 ANILTNSIGNDKKTELMVTEAKSMNLKILPPDINESHWYYRATSKGIYLSLGAVKGVGYQ 778 Query: 849 TARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + I+E + + D R+ ++ R++LESL+ GA D F +R LL +LD Sbjct: 779 SVKAIVEERYENGKYKDFFDLTRRLPNRVKTRKLLESLILVGAFDQFNENRATLLSTLDQ 838 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + A VE++ F K ++ K L + + FE E LGFY S HP Sbjct: 839 VLDGASNVEQDELLFE---FVTPKESYQAKEELPDKVLSD----FEKEH--LGFYISKHP 889 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 ++ + +GI Y+ S A NN + + + +T+ G + +VT ++ K Sbjct: 890 VEKIFENKQLLGI--YKLSNAK---NNQPILVQIDKMNRIRTKNGQPMAFVTLNDGTKTL 944 Query: 1028 EANFFP 1033 + FP Sbjct: 945 DGVIFP 950 >gi|297243791|ref|ZP_06927721.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis AMD] gi|296888212|gb|EFH26954.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis AMD] Length = 1188 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 365/1075 (33%), Positives = 575/1075 (53%), Gaps = 69/1075 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL H+ YSLL+GA + +++ + PA+AITD N+ A E A AGI+P Sbjct: 7 NFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKP 66 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQRLIELV 116 IIG + + + + ++ + + T + + L G L++ Sbjct: 67 IIGIEAYVTPETARQ--DKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNLLKAS 124 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S L + + R+ L ++G+I +G SG I + A + F+ Sbjct: 125 SVANLEGRVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAGEFQD 183 Query: 177 LFG-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FG D ++ L H R ++ ++++A PL+ATN+ ++ EED EA D ++ + Sbjct: 184 IFGRDNFFIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAMLCI 243 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--VHAPI 291 + + DR + +YLK+ +M +F + PEA +NT+EIARRC+ + Sbjct: 244 NSGSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAF 303 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P+F +C + E L+ K GLE R + ++ D+E VI +M Sbjct: 304 MPQF---DCPEGWDETSLFLK-KVEEGLERRYNNNI------PMEVLKQADYECGVICQM 353 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 +F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ L+FERFLNP+ Sbjct: 354 QFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPE 413 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+S+PD D+DF D R +V+ YV KYG ++VAQ + +G+++ K AL+D R + +S Sbjct: 414 RVSLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 473 Query: 472 VDRLCKLIPNDPA---HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520 +++ K++P PA +SL I D+ FRE DP R+ E ++ +EG Sbjct: 474 GEKITKVLP--PAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEG 531 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTL 579 L R HA ++G P++ P+ R+D + T F E GL+K DFLGL L Sbjct: 532 LIRQTGVHACATIMGSEPITNTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNL 589 Query: 580 TLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T+++ +L + G +D + IP DD TY LL+ TLG+FQL+S GMR L ++PD Sbjct: 590 TVIRDTLRNIENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPD 649 Query: 639 CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM---LKETQGVIIYQ 692 DI AL++LYRPGP +D+ Y RKNG + I+ IHP + +P+ L ET G+I+YQ Sbjct: 650 NFNDISALIALYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQ 709 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQV A++L+GYSL +ADVLRRAMGKK E + K++ F G +G S+ A ++++ Sbjct: 710 EQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDV 769 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + E N +K + +AR+ Sbjct: 770 LVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRM 829 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKP-FDSLEDFCS 870 IQ++ P VN +++ + + + L AI+ VG I+ E ++ F + DF Sbjct: 830 GIQVLQPDVNESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQ 889 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-- 928 RV LNRR++ESL+ AGA D +R L Q D +++ + ++FA Sbjct: 890 RVPISALNRRLVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADL 949 Query: 929 -------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKM 978 + G +IT+ + + E+ +LG Y S HPL + LR+M Sbjct: 950 DSSSDSDDDNGMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREM 1009 Query: 979 GIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + T+ G + +A +V S ++ +RKG+ VT + + FF Sbjct: 1010 SIAQLIDRARTMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1064 >gi|325300436|ref|YP_004260353.1| DNA polymerase III, alpha subunit [Bacteroides salanitronis DSM 18170] gi|324319989|gb|ADY37880.1| DNA polymerase III, alpha subunit [Bacteroides salanitronis DSM 18170] Length = 1265 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 377/1143 (32%), Positives = 602/1143 (52%), Gaps = 129/1143 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YS+L+G S++ ++DK A+ IAITD ++F EF Sbjct: 4 FVHLHVHTQYSILDGQASISRLVDKAMANGMKGIAITDHGDMFGIKEFFNYVNKKNGGTN 63 Query: 61 ---------------------------KACAAGIQ--------PIIGCQLDIDMQDNLKM 85 AC I+ PIIGC++ + ++ Sbjct: 64 GEIKDLKKKVAALESGKVESENPEADIAACKEQIEVAKKKLFKPIIGCEMYVARN---RL 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGL 144 T++ P +++L +GY LI+LVS+ + QG R + L++ EGL Sbjct: 121 TDKNGKPDQGGYHLIVLAKNLKGYHNLIKLVSKAWT--QGFYMRPRTDRAELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRES 198 I+ + G + R AE+ + +K LFG+ Y+ LQRH+ ++ Y+ Sbjct: 178 IVCSACLGGEVPRRITAGQFAEAEEAIQWYKNLFGEDYYLELQRHKATVPRANHETYKLQ 237 Query: 199 QVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +VV + A +++ LV TN+ F+ EE+ EAHD L+ ++ S + +R T + Sbjct: 238 EVVNKKLIEYARKYDIKLVCTNDVHFVDEENAEAHDRLICLSTSKDLDDPNRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +IFSD+PEAL NT E+ + F HAPI+P R+ E Sbjct: 298 MKTREEMNAIFSDVPEALVNTCEVCDKVEFYSIDHAPIMPTFSIPEEFGTEEEYRKRYSE 357 Query: 298 KECDDIQKEEEN------ELRNKA----VAGLE------------VRLAQGAIAKGYHAQ 335 K+ D ++EN E KA + G E +LA + Y A Sbjct: 358 KDLFDEFTQDENGNVVMSEADAKAKIERLGGYEKLYRIKLEADYLAKLAYEGARRRYGAD 417 Query: 336 ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 + ++R+ FEL+++ M F GYFLIV DFI A+ ++ VGPGRGS AGS AY L Sbjct: 418 LTDEVKERIKFELHIMKTMGFPGYFLIVQDFIAAARNQLDVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA IIT+G+ Sbjct: 478 ITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRLCKLIP+ P ++L AIA + A ++ DP + Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLCKLIPDKIPDKKLNLPNAIAYVPELQAAEVSSDPVL 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 ++ ++ LEG R+ HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 + GLIK DFLGLKTL++++++++ + +G+++++ IP DD TY L T+G FQ Sbjct: 658 ETGLIKMDFLGLKTLSIIKEAIENIRHSKGIELNIDEIPIDDPATYQLYGEGQTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L ++P ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGKKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + N+ +I Sbjct: 838 KTLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNVSNITEIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIM-EASAD 859 K + + I+++ P VN + F V GD I + L AIKGVG + + I+ E + Sbjct: 898 KLMDECKAMGIRVLGPDVNESSMKFSVNYHGD--IRFGLGAIKGVGESAVQSILVEREKN 955 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKY 911 F ++ DF RV+ NR+ +E+L AG D F G R ++ + +Y Sbjct: 956 GVFKNIFDFVQRVNLSACNRKNIENLALAGGFDSFSGIKREDFFVKNAKDETFVEILVRY 1015 Query: 912 AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 + ++ ++F E+ + + R E+ ++G Y S HPLD Y Sbjct: 1016 GNRYQVDKAAAVNSLFGGEQAVEIATPEIVHAPAWSDLERLNKERELVGIYLSAHPLDEY 1075 Query: 972 KPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 IL + + + ++ +++ L +V ++ TR G G + + + Sbjct: 1076 AVILENVCNARMSQLADLTPLQNHDLTLGGVVTGVREGYTRTGKPYGVAKLEDYSGTADF 1135 Query: 1030 NFF 1032 FF Sbjct: 1136 AFF 1138 >gi|256827611|ref|YP_003151570.1| DNA-directed DNA polymerase III PolC [Cryptobacterium curtum DSM 15641] gi|256583754|gb|ACU94888.1| DNA-directed DNA polymerase III PolC [Cryptobacterium curtum DSM 15641] Length = 1165 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 363/1059 (34%), Positives = 565/1059 (53%), Gaps = 56/1059 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---- 65 +FVHL H+ YSLL+GA + +++ + A PA+AITD + + S + + AC + Sbjct: 2 AFVHLHNHTEYSLLDGATHVKDMVQRAADLGMPAVAITD-HGVMSGVPELEDACISVEKE 60 Query: 66 ---GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 ++PI GC++ D LK +GK P + ++LL T EGY L++LVS ++ Sbjct: 61 TGIKVKPIFGCEIYFTTDDELK--REGK---PRLYHMILLAKTNEGYHNLVKLVSESHV- 114 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GD 180 D R + L+ ++GLI + +G I R + A LF GD Sbjct: 115 DNFYYKPRTTFAMLKRY-SKGLIGTSACIAGIIPRLLDLGQYEDAMSWARKLAGLFEPGD 173 Query: 181 RLYVNLQRHR-----GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 Y+ LQ G+ ++ Q+ Q+A L +ATN+ +L+ +D +A D+++ + Sbjct: 174 -FYLELQDQGVVTDLGHTQHELNVQLSQIAKECGLKTIATNDFHYLTHDDAKAQDIILCI 232 Query: 235 AHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + V +R R + D Y+K EM + +D PEA +NTVEIA +C+ +L+ + ILP Sbjct: 233 GTGSQVDDTNRMRFSNDQFYMKTEEEMRAALADFPEACDNTVEIAEKCNVVLERDS-ILP 291 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR----QRLDFELNVIA 349 RF E + E + R + +GL R +G + R +R + E VI Sbjct: 292 RFPVPE----GETEVSWFRKQCESGLVRRYGEGKVQTFQELAQVRPEVAERYEHEAQVII 347 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 + F YFLIV ++I WAK + I VGPGRGS AGS+ YA+ ITD+DPL + LLFERFL+ Sbjct: 348 KQGFPAYFLIVQEYIMWAKDHGIGVGPGRGSAAGSIVTYAMGITDLDPLPYGLLFERFLS 407 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 +R+ MPD D+DF R +VI +V+ YG + ++ +ITFG LQAK A+RD R L PY Sbjct: 408 EERVEMPDIDVDFDDQHRQDVIDHVREFYGEDHISGVITFGKLQAKNAVRDAARVLGYPY 467 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 DRLCKLI N+ + QA+ + + A ++ +++ +Q +EG R HA Sbjct: 468 GVGDRLCKLIGNELGITIQ-QALETNPDLKAAYESEADAQAVIDAAQSIEGHVRGEGVHA 526 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 +I PL+ VP+ RD + +TQ++ + + GL+K DFLGL+TL ++ ++ D + Sbjct: 527 CATIICRDPLADHVPVKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLGVISRACDNV 586 Query: 590 -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 A+ G+ +D S I +D E + L+ G+FQ+E + M+P DI+A ++ Sbjct: 587 KARHGIDIDPSAISLEDPEAFKLMCGGNMDGLFQVEGNLYVTLFARMKPRRFSDIVASIA 646 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 L RPGP+ N V Y +R +GK ++V + P+L+ET G I+YQEQ+MQI+ +SG+S Sbjct: 647 LNRPGPLQNGFVDDYVDRVSGKSQVVYYDDRLRPILEETYGTIVYQEQLMQISMRMSGFS 706 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 +AD LR+AMGKK E M +E + GA NG S ++ I+ KFA Y FNKSH+ Sbjct: 707 AGKADKLRKAMGKKKLEVMKALEEDWNQGAVDNGYSLEVSKKIWSDAEKFAQYAFNKSHS 766 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 A YAV+ +TA++K HYP EF+AA ++ + N +K+ + IQ++PP +N+ V Sbjct: 767 ACYAVLVMRTAYLKAHYPNEFMAAVLSSYLGNNDKLIHYIASCAASGIQVLPPDINSSNV 826 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 +F D + + LA ++GVG I+ E P+ SL DF R+DS+ NR+ LE+L Sbjct: 827 EFTPTDEGVRFGLAGVRGVGEKVVEEIIAERDTHGPYTSLHDFVHRLDSRCYNRKTLEAL 886 Query: 886 VFAGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKIT 939 + AGA D GY+R QL+ +D + + A +K+R ++F + FS++ Sbjct: 887 IKAGAFDSTGYTRKQLMYFIDETPLLESAAKRQKDRNCGQTSMFDLFGDSDDSGFSEETP 946 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVATIRGN 993 + E+ +L Y S HPL Y +L K+ + E + Sbjct: 947 APDGVEWDKRTLLAFEKDILKIYVSDHPLRPYAGLLSKLSKFRLGDLADREHDI-----K 1001 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 N M+ S K T+KG+R+ T + EA F Sbjct: 1002 NATFVGMISSVVTKLTKKGTRMATFTLEDTTGHVEAVCF 1040 >gi|323356540|ref|YP_004222936.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037] gi|323272911|dbj|BAJ73056.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037] Length = 1154 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 379/1052 (36%), Positives = 556/1052 (52%), Gaps = 79/1052 (7%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+GA + ++ + PAIA+TD N F+A EF + A AGI+PIIG + + Sbjct: 1 MLDGAARIGPMVQEAVKQGMPAIAVTDHGNTFAAYEFYKTAKDAGIKPIIGIEAYVTPGT 60 Query: 82 NLKMTNQGKTPFPTVPS-----------IVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SV 129 + + + P S + LL T EG L L S+ + +G Sbjct: 61 HRSDKTRVRWGSPEQQSDDVSGSGAYTHMTLLSETTEGMHNLFRLSSKASM--EGYYFKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ LQ + GLI TG SG + + A F+ +FG Y Sbjct: 119 RMDRELLQTY-SRGLIATTGCPSGEVQTRLRLGQYEAARAAAAEFQDIFGKENYFAEIMD 177 Query: 190 RGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G +R S +++++ +PL+ TN+ + + D +H L+ V + + R + Sbjct: 178 HGLSIERRVMSDLLKISKDLNIPLLGTNDLHYTHQHDATSHAALLCVQSGSTLDDPKRFK 237 Query: 248 VTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----EKECDD 302 D +Y+K+ +EM +F D PEA +NT+ IA RC A +PRF E E Sbjct: 238 FDGDGYYVKSPAEMRQVFRDNPEACDNTLLIAERCDVEFDTSANYMPRFPVPPGETEGSW 297 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + KE EN L+++ G+ R++ ++E +VI +M F GYFL+VAD Sbjct: 298 MIKEVENGLQDRYPGGI--------------PDAVRKQAEYETDVILQMGFPGYFLVVAD 343 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+ L+FERFLNPDR+SMPDFD+DF Sbjct: 344 FINWAKNNGIRVGPGRGSGAGSMVAYAMKITDLDPLQHGLIFERFLNPDRVSMPDFDVDF 403 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN- 481 RR EVI+YV KYG ERVAQI+T+G+++AK AL+D GR L P+S D+L K +P Sbjct: 404 DDRRRGEVIQYVTEKYGDERVAQIVTYGTIKAKQALKDAGRVLGFPFSMGDKLTKAMPPA 463 Query: 482 ------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 +P HP +A FR DP + + + LE L R HA Sbjct: 464 VMGKDMPLDGMFNPEHPRYKEA----GEFRTLIETDPEAKTVFDTALGLENLKRQWGVHA 519 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+++ PL ++P+ R + VTQF+ E GLIK DFLGL+ LT++ +LD + Sbjct: 520 AGVIMSSEPLIDIIPIMRREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDALDNI 579 Query: 590 -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 A RG + L + DD +Y LL TLG+FQL+ MR L M+PD EDI A+++ Sbjct: 580 EANRGHPLVLEDLALDDAASYELLARGDTLGVFQLDGGPMRSLLRLMRPDNFEDISAVLA 639 Query: 649 LYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQVMQIAQLL 702 LYRPGP +++ + Y RKN +++I IHP L +P+ L T G+I+YQEQVM +AQ + Sbjct: 640 LYRPGPMGVNSHINYALRKNKQQEIEPIHPELEEPLADILDTTYGLIVYQEQVMAVAQRV 699 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GY+L +AD+LRRAMGKK K E+DKQKE F G ++ G ++++L FADY FN Sbjct: 700 AGYTLGQADLLRRAMGKKKKSELDKQKEIFFGGMTERGYGDVAQQTLWKVLESFADYAFN 759 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 K+H AAY ++SY TA++K HYP E++AA +T D+ +K+ + + R+ I+++PP VN Sbjct: 760 KAHTAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMAVYLNECRRMGIRVLPPDVN 819 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882 F I + L A++ VG I+ A D + S DF ++V N+R + Sbjct: 820 ESIRFFAAVGEDIRFGLGAVRNVGANVVDGIVAARQDAKYTSFHDFLAKVPMHVANKRTV 879 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 ESL+ AGA D G +R LL+ ++ + A ++ N E G D + E Sbjct: 880 ESLIKAGAFDTLGSTRRALLEIHEDACEGAVSDKRREANG-------EVGFDFDSLWDEP 932 Query: 943 FSVENSSVRFEN--------EQRVLGFYFSGHPLDVYKPILRK---MGIKGYEESVATIR 991 V R E E+ +LG Y S HPL + L K I S Sbjct: 933 QQVTKVPERPEWTKKDKLAFEREMLGLYVSDHPLAGLEVPLAKHASTSIHDLLSSEDVQD 992 Query: 992 GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSE 1022 G+ + +A ++ S Q + ++ G+ G VT + Sbjct: 993 GDQVTVAGLLTSVQHRVAKQSGNPYGMVTVED 1024 >gi|299535454|ref|ZP_07048776.1| DNA polymerase III subunit alpha [Lysinibacillus fusiformis ZC1] gi|298729215|gb|EFI69768.1| DNA polymerase III subunit alpha [Lysinibacillus fusiformis ZC1] Length = 1027 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 358/1030 (34%), Positives = 554/1030 (53%), Gaps = 52/1030 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + V+ ++H+S LL+ + L ++ + + A AI +T L+ L F + A I Sbjct: 2 THVYTKMHTSADLLKSTIRLEQLIPFLQEQKTQACAIVNTK-LYGLLPFCKALQQANIHA 60 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG +++ D K P +VL T EGYQ L+++ S + + +Q Sbjct: 61 VIGLSVNVQWHDK-------KLP------LVLYARTQEGYQHLLKISSAISI----RQDD 103 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + WL+ + +L+ +D + + +LF Y+ + R Sbjct: 104 VLPWKWLEGYSAGCIALLSSDDLTDVDDW---------QAMVSALFQLFNHHFYMGIARP 154 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G +E V H + LVA+ + FL ED+ A++V A+ + + Sbjct: 155 GGIKAEQEDDFVSWCEGHAIALVASQSCYFLRPEDHFAYEVARAIDTGEKLGNTMQTADV 214 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 ++ E + F+D P+ L+ + ++ C L +P+F E + E+ Sbjct: 215 QGYFAPTVFEWQNWFADRPDWLDASTKMLACCKADLPKMPVQMPKFPVPEGET----AES 270 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L +A GLE R Q AI YH +RL +EL +I M F+ YFLIVADF+++AK+ Sbjct: 271 LLVKEAFTGLEERFKQLAIPVAYH-----ERLQYELEIICSMGFADYFLIVADFMRYAKE 325 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N I GPGRGS AGS+ AY+L+IT +DPL + LLFERFLNP+R+++PD DIDF +R + Sbjct: 326 NRILTGPGRGSSAGSLVAYSLSITQVDPLAYGLLFERFLNPERITLPDIDIDFVDSKRHQ 385 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+YV KYG VAQIITFG+L AKA RDV R ++++ K+IPN P ++L Sbjct: 386 VIQYVAQKYGKANVAQIITFGTLSAKAVARDVARVFGFDAEMLEKISKMIPNKPG--ITL 443 Query: 490 Q-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 Q A+A+ F+ + R E++ KLEGL R++S HAAGIVI PL VP+ + Sbjct: 444 QRAVAESQDFQGWLAENDKHLRWYEVALKLEGLPRNSSIHAAGIVIAPSPLVNTVPI-EE 502 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHE 607 + TQ+ M IE GL+K DFLGL+ LT+L++ G ++ IP D + Sbjct: 503 GHDGIYSTQWPMGDIEACGLVKMDFLGLRNLTILEQIRWSIYKAGGPWIEFERIPMHDDK 562 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL TLGIFQLES GM+QAL + P DI+A+ +LYRPGP+D I VY RK G Sbjct: 563 TFQLLQRGDTLGIFQLESDGMKQALRDIGPTSFLDIVAVNALYRPGPMDFIPVYAKRKAG 622 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +E + HP+++P+L+ET GVI+YQEQ+++IA +L+G+++ +AD+LRRA+ KK ++ +++ Sbjct: 623 REMVTMPHPVLEPILQETFGVIVYQEQIIKIASVLAGFTMGQADLLRRAVSKKNRQVLEE 682 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+ F+ GA + G + +A ++EL+ +FADYGF KSHA AY+VISYQ A++K H+P F Sbjct: 683 QRTAFVQGALRQGFEQHLAEEVYELIVRFADYGFPKSHAVAYSVISYQMAYLKAHFPQSF 742 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 AA ++ NVEKI++F +A+ I PPS+ F V + I YSL+ IKGV Sbjct: 743 YAALLSNATGNVEKIQQFVHEAKDKGIPFYPPSLKNSTKYFTVENEGIRYSLSGIKGVPH 802 Query: 848 TTARHIMEASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 T I P ++L D + ++ +VLESL++AGALD R L+ ++ Sbjct: 803 TFIEKIHGLRQTNPEVLNNLFDLAVALSAQHFKPKVLESLIYAGALDYLERDRAVLIMTV 862 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRVLGFYFS 964 + K A+ + E+I FS K + + + +E+ LGFY S Sbjct: 863 EAALKQAELLRPT-----EDIDLASAMAFSFGKPKYMQAGAMSQKEKLMHEKESLGFYIS 917 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HP V + L I + R G +I++ ++ ++ +T+KG ++ +V + Sbjct: 918 THP--VAQERLLWTDINSTCRELRQKRDGTSIKMIGLIEEVKKIRTKKGEQMAFVQLQDE 975 Query: 1024 AKEYEANFFP 1033 FFP Sbjct: 976 FGTVSITFFP 985 >gi|300771841|ref|ZP_07081712.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300761227|gb|EFK58052.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 1474 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 358/1104 (32%), Positives = 574/1104 (51%), Gaps = 102/1104 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 F HL HS +S+L+ +S+ ++D ++ PA+A+TD N+ A F + Sbjct: 259 FAHLHNHSQFSVLQSTISIGGLVDAAVKNKMPAVALTDHGNMMGAFHFVSRVLGHNKDAE 318 Query: 67 -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 ++PI+GC+ I +D+L + + +V L GY Sbjct: 319 TKNQELIDNGEAPTETIVKPIVGCEFFI-CEDHLDKSRKDNGY-----QVVFLAKNKNGY 372 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S Y +G V + E E +I+L+G G I AE+ Sbjct: 373 HNLAKMSSVAYT--KGFYYVPRIDKKVVEQYKEDIIVLSGNLQGEIPNKILNIGENQAEE 430 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228 L+ +K+ FG+ Y+ + RH D R ++ +V LA H + ++ TNN+ ++++ D AH Sbjct: 431 ALIWWKEQFGEDFYIEVMRHGQEDENRVNETLVSLARRHGVKVIGTNNTYYVNKADAHAH 490 Query: 229 DVLMAVAHSTVVSQ-KDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 D+L+ V +S K R R ++Y K+ SEM +F+DLPEA+ N EI + Sbjct: 491 DILLCVKDGEKLSTPKGRGRGFRFGLPNQEYYFKSASEMKKVFADLPEAIVNIQEIIDKV 550 Query: 282 SFILQVHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYH 333 +LP+F ++++ +D K EN+ L + G E R A+ Sbjct: 551 EIFKLNRDVLLPKFEIPEQFQVQEDNEDGGKRGENKYLAHLTYVGAEKRYAE-------I 603 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 D R+RLDFEL I + + GYFLIV DFI A+ + VGPGRGS AGS AY L IT Sbjct: 604 TDDIRERLDFELATIEKTGYPGYFLIVQDFIAEARNMGVSVGPGRGSAAGSAVAYCLGIT 663 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 +IDP+++ LLFERFLNPDR+SMPD DIDF + R +V++YV +KYG +VAQIIT+G++ Sbjct: 664 NIDPIQYDLLFERFLNPDRVSMPDIDIDFDDEGRGKVMQYVIDKYGASQVAQIITYGTMA 723 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADP--SVD 509 AK++++D R L +P S + + KLIPN + L I D+ +EA A+ +V Sbjct: 724 AKSSIKDTARVLDLPLSDANEIAKLIPN-----LKLSKIFNMDEKALKEALRAEELEAVH 778 Query: 510 RLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 +L+ ++ LEG R+ HA G++I ++ VP+ SDL VT Sbjct: 779 KLISLADGAGLEAETIKQARVLEGSMRNTGIHACGVIITPDDITNFVPVSLAKDSDLYVT 838 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615 QF+ +E AGL+K DFLGLKTLTL++ ++ + R + +D P DD TY L Sbjct: 839 QFDNSVVESAGLLKMDFLGLKTLTLIKDTVANVKLRHNLDLDPDNFPIDDQLTYELFQRG 898 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675 T+G+FQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RK+G E IV Sbjct: 899 ETIGVFQYESPGMQKHMKDLKPTVFADLIAMNALYRPGPMEYIPSFIKRKHGIEPIVYDL 958 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 + LKET G+ +YQEQVM ++Q L+G+S +ADVLR+AMGKK K +DK K +F+S Sbjct: 959 DACEEYLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQKAVLDKMKPKFVSQ 1018 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A + G + + I+ FA Y FNKSH+ YA ++YQTA++K H+P E++AA ++ Sbjct: 1019 AVEKGHNAKVLEKIWTDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHFPAEYMAAVLSNN 1078 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM 854 M++++++ F ++ R+ ++++ P VN F V D I + + A+KGVG I+ Sbjct: 1079 MNDIKQVTFFMEECRRMGLEVLGPDVNESHYKFTVNDRGAIRFGMGAVKGVGAGAVDTIV 1138 Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQ-------SLD 906 + P+ S+ D R+D + N++ ESL +AG D F + R Q L+ Sbjct: 1139 QTREGNPYKSVFDMAKRIDLRAANKKAFESLAYAGGFDSFKETHRAQYFHVDGDNSTGLE 1198 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 ++ Q ++N ++ ++F + L + + E+ V+G Y + H Sbjct: 1199 KAVRFGQRHKENESSAQASLFGGGGSAELPEPVLAPCPQWGLIEKLKYEKDVIGIYLTSH 1258 Query: 967 PLDVYK--------------PILRKMGIKGYEESV----ATIRGNNIRLAAMVVSKQQKK 1008 PLD YK ++ K+ EE V I+ + + ++ + + Sbjct: 1259 PLDNYKFEIKHFCQNNVSELQLINKVKASEVEEDVLLEFNKIKNKEVIIGGIIAAANHRV 1318 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 ++ G G + + + +E F Sbjct: 1319 SKNGKPFGILVIEDYSDSFEMMVF 1342 >gi|330466901|ref|YP_004404644.1| DNA polymerase III subunit alpha [Verrucosispora maris AB-18-032] gi|328809872|gb|AEB44044.1| DNA polymerase III subunit alpha [Verrucosispora maris AB-18-032] Length = 1177 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 375/1071 (35%), Positives = 571/1071 (53%), Gaps = 64/1071 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YS+L+GA L ++ ++ PA+A+TD N+ A +F ++A AAG+ P Sbjct: 4 SFAHLHVHTEYSMLDGAARLKDLFAEVKRQGMPAVAMTDHGNMHGANDFYKQAMAAGVTP 63 Query: 70 IIGCQLDIDMQDNL--KMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 ++G + + + K G+ + + + G L +L S+ Sbjct: 64 VLGIEAYVAPESRFHKKRVRWGRPEQKSDDVSGSGGYTHMTIWARNRVGLHNLFKLTSKA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Y + R+ L E +GL+ TG SG + A + ++ +FG Sbjct: 124 YTEGYFVKWPRMDAELLAE-HADGLMATTGCPSGEVQTRLRLGHDAQALEAAAKYQDIFG 182 Query: 180 -DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 + ++ L H G D ++ + ++++ +P V TN+S + E EAHDVL+ V Sbjct: 183 KENYFLELMDH-GLDIEKQVRDGLLEIGRKLNIPPVVTNDSHYTHEAQSEAHDVLLCVQT 241 Query: 237 STVVSQKDRPRVT-PDHYLKNRSEMVSI-FSDLP-EALENTVEIARRC--SFILQVHAPI 291 + V+ +R + +Y+K+ EM + SD+ E NT+ +A + + + + H + Sbjct: 242 GSNVADPNRFKFGGSGYYIKSADEMRGVDNSDVWLEGCRNTLLVAEKVDPTGMFEFHN-L 300 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +PRF E + EE+ R + AGL R G I +G+ Q ++EL VI +M Sbjct: 301 MPRFPVPEGE----TEESWFRKETFAGLARRFPNG-IPEGHVVQ-----AEYELGVIIQM 350 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFL+VADFIQWAK I VGPGRGS AGS+ AYAL ITD+DP+ L+FERFLNP+ Sbjct: 351 GFPSYFLVVADFIQWAKNQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPE 410 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D R L PY+ Sbjct: 411 RVSMPDVDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAV 470 Query: 472 VDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518 DR+ K +P DP HP +A R ++ V ++++ ++ + Sbjct: 471 GDRITKAMPPAVMGKDIPLEGIFDPKHPRYAEA----GEIRGMYESEADVKKVIDTARGI 526 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R HAAG+++ P+ +P+ R + +TQF+ E GL+K DFLGL+ Sbjct: 527 EGLIRQTGVHAAGVIMSAEPIIDHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRN 586 Query: 579 LTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ ++ + G ++DL +P DD Y LL TLG+FQL+ MR L M+P Sbjct: 587 LTIIDDAVKNIQLNHGKELDLLGLPLDDKGAYELLARGDTLGVFQLDGGPMRSLLRMMKP 646 Query: 638 DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691 D EDI A+++LYRPGP +D+ Y RKNG ++I IHP ++ LKE T G+I+Y Sbjct: 647 DNFEDISAVLALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLKEILAPTYGLIVY 706 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQV + AQ+L+GY+L +AD+LRRAMGKK KE +DK+ F G + G S +++ Sbjct: 707 QEQVQRAAQILAGYTLGQADLLRRAMGKKKKEILDKEFIPFRDGCRERGYSDDAIQKVWD 766 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L FA Y FNK+H+AAY ++SY TA++K HYP E++AA +T D+ +K+ + + R+ Sbjct: 767 VLVPFAGYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRR 826 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCS 870 IQ++PP VNT F I + L AI+ VG IM +K + DF S Sbjct: 827 MGIQVLPPDVNTSAGPFTPVGKEIRFGLGAIRNVGANVVTSIMRCRQEKGEYADFYDFLS 886 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAH 929 +VD+ N++ +ESL+ AGA D G+SR LL D I YA K +++ A Sbjct: 887 KVDAVVCNKKTIESLIKAGAFDSMGHSRKGLLTVHADAIDAYADVKRKEAVGQYDLFGAG 946 Query: 930 ----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKG 982 E T + + + + E+ +LG Y S HPL + IL I Sbjct: 947 FGEAEVATNTQVMPTIGDGEWDKRDKLAFEREMLGLYVSDHPLFGLEHILGASADCTISA 1006 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E G + LA ++ Q++ T++G T + A E FFP Sbjct: 1007 LSEEGTVPDGAVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057 >gi|255326240|ref|ZP_05367326.1| DNA polymerase III subunit alpha [Rothia mucilaginosa ATCC 25296] gi|255296694|gb|EET76025.1| DNA polymerase III subunit alpha [Rothia mucilaginosa ATCC 25296] Length = 1180 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 384/1061 (36%), Positives = 573/1061 (54%), Gaps = 66/1061 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YS+L+GA L ++ ++A +D LF A +F ++A A I+PI Sbjct: 6 FTHLHVHTEYSMLDGAARLGDLFTHAKELGMKSMATSDHGFLFGAFDFWRQAKAHDIKPI 65 Query: 71 IGCQL------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IG + + D + G + + + T EG L S Sbjct: 66 IGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYT---HMTMWAETTEGMHNLFR-ASS 121 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 + L+ R+ LQ ++GLI TG SG + A + F+ +F Sbjct: 122 IASLEGQLYKPRMDREVLQTY-SKGLIATTGCPSGEVQTRLRLGQFDEAVQAASEFRDIF 180 Query: 179 G-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 G D Y + H G D R Q + +LA LP VATN+ + +ED+ AH L+ V Sbjct: 181 GKDNFYCEVMDH-GLDIERNVQEDLHRLAKKLNLPFVATNDLHYTRQEDHTAHAALLCVQ 239 Query: 236 HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 + ++ R + D+ YL++ EM ++F D+P A ENT+EIA RC+ A +P Sbjct: 240 SGSTLTDPKRFKFDADNFYLRSAEEMYALFGDIPGACENTLEIAERCNVEFNTKANYMPN 299 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F E ++ EE+ + GL R QG R++ ++E+ VI M F Sbjct: 300 FPVPEGEN----EESWFVKEVEKGLHYRFPQGV------PDTVRKQAEYEVGVITSMGFP 349 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD++PL L+FERFLNPDR+S Sbjct: 350 GYFLVVADFINWAKRNGIRVGPGRGSGAGSMVAYAMRITDLNPLDHDLIFERFLNPDRVS 409 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFD+DF RR EVI YV KYG E+VAQI+TFG+++AK AL+D R + PYS +R Sbjct: 410 MPDFDVDFDDRRRGEVIDYVTEKYGEEKVAQIVTFGTIKAKQALKDASRVMDQPYSVGER 469 Query: 475 LCKLIPNDP-AHPVSLQAI--ADDSRFREAR-----LADPSVDRL----LEISQKLEGLY 522 L K +P D ++L + +D R+ EA + DP VD++ E ++ LEGL Sbjct: 470 LTKAMPPDVMGKNIALANVYNEEDKRYAEAADLRALIEDP-VDKIYGQVFETAKGLEGLK 528 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ + L ++P+ R +TQF+ E GLIK DFLGL+ LT++ Sbjct: 529 RQWGVHAAGVIMSSKDLVDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTII 588 Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +++ + + RG+ +DL + DD E+Y LL TLG+FQL+ MR L+ M+P+ E Sbjct: 589 SDAVENIKSNRGIDLDLESLSLDDPESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFE 648 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 I A+++LYRPGP+ ++ Y RKNGK++I IHP ++ LK+ T G+I+YQEQV Sbjct: 649 HISAVLALYRPGPMGANSHTNYALRKNGKQEIEPIHPELEEPLKDILDTTYGLIVYQEQV 708 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ F G NG S+ ++++L Sbjct: 709 MAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYATFHDGMISNGYSEGAIKALWDILLP 768 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 F+DY FNK+H AAY ++SY TA++K HYP E++AA +T DN +K+ + + R I Sbjct: 769 FSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGIT 828 Query: 816 IMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVD 873 ++ P VN + F VGD+ I + + AI+ VG ++ A +K ++S DF +V Sbjct: 829 VLAPDVNESTLTFAPVGDD-IRFGMGAIRNVGANVVEGMIAAREEKGRYESFNDFLKKVP 887 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EK 931 + N+R +ESL+ AGA D G++R L + A V++ ++F Sbjct: 888 LQVCNKRTIESLIKAGAFDDLGHTRRSLSLIHEAAVDAAVAVKRKEAAGQFDLFGSLGMD 947 Query: 932 GTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 D++T+ V R E+ +LG Y S HPL + L + + Sbjct: 948 DALGDELTVTIPDVPEWDRREKLNFERDMLGLYVSDHPLRGLERALSDAASHSVHDIIGE 1007 Query: 990 ---IR-GNNIRLAAMV--VSKQQKKTRKGSRIGWVTFSEPA 1024 +R G + LA M+ VS++ K+ G++ V +P+ Sbjct: 1008 DSHVRDGETVTLAGMLTGVSRRIAKS-SGNQYASVELEDPS 1047 >gi|282880114|ref|ZP_06288834.1| putative DNA polymerase III subunit alpha [Prevotella timonensis CRIS 5C-B1] gi|281305987|gb|EFA98027.1| putative DNA polymerase III subunit alpha [Prevotella timonensis CRIS 5C-B1] Length = 1235 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 379/1114 (34%), Positives = 584/1114 (52%), Gaps = 101/1114 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------SQKAC 63 +VHL VH+ YS+L+G + ++DK AD +AITD N+F EF ++K Sbjct: 4 YVHLHVHTYYSILDGQSPIKRLVDKAVADGMQGMAITDHGNMFGIKEFFDYTNSVNKKLK 63 Query: 64 AAGIQP---IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 A G QP I GC++ + QD +K + +++L GY+ LI+LVS Sbjct: 64 AEGKQPFKPIFGCEMYVARRTKQDKVKEMGD-----MSGYHLIVLAKNYNGYKNLIKLVS 118 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 R ++ D R + L++ E LI+ + +G + R + + + +K++ Sbjct: 119 RSWV-DGYYMRPRTDRADLEKY-HEDLIVSSACLAGEVPRKILKGDMEGVRETIEWYKRV 176 Query: 178 FGDRLYVNLQRHRGYDRY----RESQ---------VVQLAYTHELPLVATNNSLFLSEED 224 FG+ Y+ +QRH D + RE+ +++LA + + ++ TN+ F+ +++ Sbjct: 177 FGEDYYLEIQRHEVKDPHIRANREAYPLQQRANKVILELAKEYGVKVICTNDVHFVDQDN 236 Query: 225 YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284 EAHD L+ ++ + R + + K R+EM +F DLPE L NT+EI + Sbjct: 237 AEAHDHLLCLSTGKDLDDPTRMLYSKQEWFKTRAEMNQVFDDLPEVLTNTLEILDKVEAY 296 Query: 285 LQVHAPILPRF-------IEKECD------DIQKE------EENEL-------RNKAVAG 318 H PI+P F E+E + D+ +E EN L R + + G Sbjct: 297 SINHDPIMPNFPIPKSFGTEEEWEQKFSKEDLYREFTTDENGENPLSEADALKRIEHLGG 356 Query: 319 -------------LEVRLAQGA--IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 LE +GA I +++ R+ FEL+V+ M F GYFLIV+DF Sbjct: 357 YEKMYRIKFEADYLEQLTYEGARKIYGDSFSKEIDDRIRFELHVMKTMGFPGYFLIVSDF 416 Query: 364 IQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 I+ A++ ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF Sbjct: 417 IRAAREELSVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDIDTDF 476 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 D R +V+++V +KYGHE A IIT+GS+ K +++DV R ++P ++ + LCK IP+ Sbjct: 477 DDDGRGKVLKWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLNRSNALCKAIPDR 536 Query: 483 PAHPVSLQAIADDSRFREARLADPSVD----RLLEISQKLEGLYRHASTHAAGIVIGDRP 538 + + I E R A+ S D ++ ++ LEG R HA G +I P Sbjct: 537 LPDGLKMNLINAIKCTPELRDAEASTDIRESNTIKYAKMLEGTVRGTGIHACGFIICRDP 596 Query: 539 LSQLVPM-------YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLA 590 +S VP+ ++D +++ TQ++ IE+ GLIK DFLGLKTL+ L++++ + Sbjct: 597 ISDWVPISTADDPDFKDEKTN--CTQYDGHVIEETGLIKMDFLGLKTLSELKEAVKNVKL 654 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 RG+ +DL IP DD TY L T+G FQ ESSGM+ L + P D+IA+ +LY Sbjct: 655 TRGIDIDLDNIPIDDELTYQLYQEGRTIGTFQFESSGMQNYLRQLCPTKFGDLIAMNALY 714 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+DNI + RK G E I P+++ LK+T G+ +YQEQVM +++LL+ ++ E+ Sbjct: 715 RPGPMDNIPSFIARKKGLEPISYPIPIMEKYLKDTYGITVYQEQVMLLSRLLANFTRGES 774 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D LR+AMGKK K +D K +FI G KNG I I+ KFA Y FNKSHAA Y+ Sbjct: 775 DALRKAMGKKKKAIVDAMKPKFIEGGKKNGYDPKILDAIWADWEKFASYAFNKSHAACYS 834 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +++QTA++K HYP EF+AA M+ D + ++ K + + NI + P VN F V Sbjct: 835 WVAFQTAYLKAHYPAEFMAAIMSRRKDQITEVSKLMDECKSMNIATLGPDVNESYEKFGV 894 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I + LAAIKG+G A+ I+ E A + + DF RVD +NR+ ESL + Sbjct: 895 NHHGEIRFGLAAIKGMGNAAAKAIIDEREAHGTYKDIFDFVQRVDFTNVNRKAFESLALS 954 Query: 889 GALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 G D FG R + ++ + +Y Q + ++ ++F E + Sbjct: 955 GGFDSFGLPRESYFTANAKGELFVETLVRYGQLYQTKKSELEHSLFGGENAVEIATPAIP 1014 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRGNNIRLA 998 K + ++ R E ++G Y S HPLD Y +L+ M + + +NI Sbjct: 1015 KPELWSNIERLNKEHELVGIYLSAHPLDEYSIVLKTMCNTQCCELADRAELSKKSNIVFG 1074 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 M+ + K T+ G G+VT + + E FF Sbjct: 1075 GMITDVKDKFTKTGKPCGFVTIEDFSGSGELAFF 1108 >gi|224025746|ref|ZP_03644112.1| hypothetical protein BACCOPRO_02487 [Bacteroides coprophilus DSM 18228] gi|224018982|gb|EEF76980.1| hypothetical protein BACCOPRO_02487 [Bacteroides coprophilus DSM 18228] Length = 1265 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 383/1143 (33%), Positives = 613/1143 (53%), Gaps = 129/1143 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YS+L+G S+ ++DK A+ IA+TD ++F EF Sbjct: 4 FVHLHVHTQYSILDGQASIPRLVDKAIANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGTN 63 Query: 61 ---------------------------KACAAGIQ--------PIIGCQLDIDMQDNLKM 85 AC ++ PIIGC++ + + ++ Sbjct: 64 GEIKDLKKKIAALESGKAESENPEAELAACKEQLEAARKKLFKPIIGCEMYVARR---RL 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGL 144 ++ + +V+L +GY LI+LVS+ + +G R + L++ EGL Sbjct: 121 EDKDGKQDQSGYHLVVLAKNLKGYHNLIKLVSKAWT--KGFYMRPRTDRAELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRES 198 I+ + G + R + AE+ + +K LFGD Y+ LQRH+ ++ ++ Sbjct: 178 IVCSACLGGEVPRRISAGQLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHETFKLQ 237 Query: 199 QVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +VV + A +++ LV TN+ F+ EE+ EAHD L+ ++ + +R T + Sbjct: 238 EVVNQKLIEYARKYDIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----------------E 297 +K R EM IF+D+PEAL NTV+I + F HAPI+P F+ E Sbjct: 298 MKTREEMNEIFADVPEALSNTVDICDQVEFYSIDHAPIMPTFVIPESFGTEEEYRKKFTE 357 Query: 298 KECDD--IQKEEENELRNKAVA--------GLE----VRLAQGAIAK-GYHA-------- 334 K+ D Q E N + ++A A G E ++L +AK Y Sbjct: 358 KDLFDEFTQDENGNVVMDEASAKAKIERLGGYEKLYRIKLEADYLAKLAYDGARRRYGEE 417 Query: 335 --QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK-KNNIPVGPGRGSGAGSVTAYALT 391 ++ ++R+ FEL+++ M F GYFLIV DFI A+ K ++ VGPGRGS AGS AY L Sbjct: 418 LDEEVQERIKFELHIMKTMGFPGYFLIVQDFISAAREKLDVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA IIT+G+ Sbjct: 478 ITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRLCKLIP+ P ++L AIA + A ++ DP + Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLCKLIPDKIPDKKLNLPNAIAYVPELQAAEVSSDPIL 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 ++ ++ LEG R+ HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++L+ + +G+ +++ IP DD TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEALENIKNSKGIVLNIDEIPIDDPATYRLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGKKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + N+ +I Sbjct: 838 KVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNISNITEIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIM-EASAD 859 K +++ I+++ P VN + F V GD I + L AIKGVG + + I+ E + Sbjct: 898 KLMDESKATGIRVLGPDVNESLLKFSVNRRGD--IRFGLGAIKGVGESAVQSILSEREKN 955 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ---LLQSLDN--IQKYAQW 914 P+ S+ DF RV+ NR+ +E+L AG D FG + + + S D ++ ++ Sbjct: 956 GPYKSIFDFVQRVNLSACNRKNIENLALAGGFDSFGNIKREDFFMKNSKDETFVETLVRY 1015 Query: 915 VEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVY 971 K + +K I + G ++ T E S S R E+ ++G Y S HPLD Y Sbjct: 1016 GSKYQMDKAAAINSLFGGEHEVEVATPEIISAPAWSDLERLNKERELVGIYLSAHPLDEY 1075 Query: 972 KPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +L + EE ++ ++ ++ L +V ++ T+ G G + + E Sbjct: 1076 AVVLENVCNVHMEELSNLTPLQNRDLILGGIVTGVREGYTKSGKPYGIAKVEDYSGVAEF 1135 Query: 1030 NFF 1032 FF Sbjct: 1136 AFF 1138 >gi|229817355|ref|ZP_04447637.1| hypothetical protein BIFANG_02617 [Bifidobacterium angulatum DSM 20098] gi|229785144|gb|EEP21258.1| hypothetical protein BIFANG_02617 [Bifidobacterium angulatum DSM 20098] Length = 1184 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 368/1076 (34%), Positives = 570/1076 (52%), Gaps = 64/1076 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEFSQKAC 63 + S +FVHL H+ YSLL+GA + L K AAD PA+ ITD N+ A E Sbjct: 1 MSDSGNFVHLHNHTHYSLLDGASKIPE-LAKYAADLSMPAVGITDHGNMHGAYEMYTNCV 59 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQ 110 G++PIIG + + + + ++ + + T + + L EG Sbjct: 60 KVGVKPIIGIEAYVTPETARQ--DKSRVHWGTEAQRRDDVSGGGLITHLTLWAENDEGLV 117 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 LI+ S L + ++ R+ L ++G+I +G SG I A + Sbjct: 118 NLIKASSVANLEGRVQRYPRMDKEVLSTY-SKGVICGSGCPSGIIQTRLALGQFDEALRA 176 Query: 171 LLTFKKLFG-DRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 + +FG D ++ + H R ++++A + PL+ATN+S ++ ED EA Sbjct: 177 AGELQDIFGKDNFFIEIMDHGLTIENRNIPGLLEIAKKLDAPLLATNDSHYVHAEDAEAQ 236 Query: 229 DVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 D ++ + + + +R + +YLK EM IF + P A +NT+EIA RC+ + Sbjct: 237 DAMLCINSGSHLDDPNRFKFDGTGYYLKPAEEMREIFKEFPGACDNTLEIAERCNVMFDD 296 Query: 288 H--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H +P+F +C + E L+ K GLE R ++ ++ D+E Sbjct: 297 HEDGAFMPQF---DCPEGWDEASLFLK-KVEEGLERRYDNNV------PEEVSKQADYEC 346 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AGS+ AYA+ IT++DPL+ L+FE Sbjct: 347 GVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGSMVAYAMGITELDPLKHGLIFE 406 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+S+PD D+DF + R VI Y KYG ++VAQ + +G ++ K AL+D R + Sbjct: 407 RFLNPERVSLPDIDVDFDPEGRLHVIDYCGEKYGRDKVAQCVIYGVIKTKQALKDSARIM 466 Query: 466 QMPYSQVDRLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQ 516 ++ D++ K L P+ SL+ I D + FRE +DP ++++ ++ Sbjct: 467 GYDFAMGDKVTKALPPSKNGKDASLKEIFDPTSKHYAEAREFRELYESDPDAHKIIDKAK 526 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +EGL R HA ++G P++ P+ + V + + T F E GL+K DFLGL Sbjct: 527 TIEGLIRQTGVHACATIMGSEPITDTSPLLQRVDNTV-TTTFEYHTCETLGLVKMDFLGL 585 Query: 577 KTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 LT++Q +L + G VD + IP DD ETY LL TLG+FQL+S GMR L+ + Sbjct: 586 SNLTVIQDTLKNIVANGKDPVDYTKIPLDDKETYQLLARGDTLGVFQLDSDGMRALLKSL 645 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNN---RKNGKEKIVSIHPLIDPMLK----ETQGV 688 +PD DI AL++LYRPGP+D + +NN RKNG +KI IHP ++ LK ET G+ Sbjct: 646 KPDNFNDISALIALYRPGPMD-MDSHNNYAKRKNGLQKIEPIHPELEEPLKQVLDETYGL 704 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F G ++G S+ A Sbjct: 705 IVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFQGMKEHGYSEEAAQA 764 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + DN +K + + Sbjct: 765 VWDVLVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGTKDNKDKTALYLGE 824 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK--PFDSLE 866 AR+ IQ++ P VN + + + + L AI+ VG I+ K F + Sbjct: 825 ARRMGIQVLSPDVNESVYAYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGKRGKFVNFM 884 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF RV LNRR++ESL+ AGA D +R L Q + + +++ ++ Sbjct: 885 DFVRRVPLSALNRRLVESLIKAGAFDSIDPNRRALYQIHETAIESVVGLKRKEAEGQFDL 944 Query: 927 F-----AHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRK 977 F A E+ D +T+ + + E+ +LG Y S HPL + LR+ Sbjct: 945 FSDMDDADEQDVMGDASVTVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMTAVLAGLRE 1004 Query: 978 MGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 M I + T+ G + +A +V + ++ +++G+ VT + + FF Sbjct: 1005 MSIAHLIDRAKTMGEGQQVTIAGLVTNVDRRVSKRGNAWAIVTVEDLESSIQCMFF 1060 >gi|298372024|ref|ZP_06982014.1| DNA polymerase III, alpha subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298274928|gb|EFI16479.1| DNA polymerase III, alpha subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 1320 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 368/1097 (33%), Positives = 583/1097 (53%), Gaps = 130/1097 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58 SFVHL VHSS+S+L+G + +++DK + P IA+TD +++ EF Sbjct: 2 SFVHLHVHSSFSVLDGMSRIEDLVDKAIKYEMPGIALTDHGSMYGIKEFLDYVKKVKKSA 61 Query: 59 ---------SQKACA--AGIQPIIGCQ--------LDIDMQDNLKMTNQGKTPFPTVPS- 98 S++ CA +PI+G + D D L + + K + Sbjct: 62 KEQLQKGKISEEECARIQSFKPILGVEAYCAARTLYDKDKNKKLFLERKNKDIIVDMSGF 121 Query: 99 -IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157 ++LL +GYQ L +LVS + +D Q RI + L+ +EGLI+ + G I + Sbjct: 122 HLLLLAKNKKGYQNLCKLVS-ISWVDGFYQKPRIDKNVLKTY-SEGLIVSSACLGGEIPQ 179 Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR------GYDRYRESQ-----VVQLAYT 206 N AE+ + F+ +FGD Y+ +Q H+ + Y Q + +LA Sbjct: 180 YILNNEIDKAEETINWFRSVFGDDFYLEVQLHKPTRPEISNETYLNQQRVNEEIYRLARK 239 Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266 +VATN+ F+ E +AH+ L+ ++ +S DR T + Y+K +M +F++ Sbjct: 240 TGTKVVATNDIHFVEAEHADAHERLVCLSTGKKISDTDRMLYTKEEYMKTPEQMRELFAE 299 Query: 267 LPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDI----QKEEENEL--------RN 313 PE ++NT+E+ + +PI+P+F I +E + Q+ E +L N Sbjct: 300 HPEVIDNTLEVLSKVELFSLDSSPIMPKFDIPEEFGTVEGYRQQFTEQDLIAEFSRTAEN 359 Query: 314 KAVAGLEV--RLAQ-GAIAKGYHAQ---DY--------------------RQRLDFELNV 347 K + + R+A+ G + K Y + DY R+R+DFELN Sbjct: 360 KPLDEEQAAKRIAELGGVEKLYRIKLEADYLTKITYDGAKERYADITDQIRERIDFELNT 419 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I M F GYFLIV DF+ A++ N+ VGPGRGS AGSV AY L IT+IDP ++ LLFERF Sbjct: 420 IKSMGFPGYFLIVQDFVAAARQMNVWVGPGRGSAAGSVVAYCLKITNIDPFKYDLLFERF 479 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNPDR+S+PD DIDF D +V+ +V +KYG E VA II +G++ K A+ DVGR ++ Sbjct: 480 LNPDRISLPDIDIDFDNDGLSQVLEWVTHKYGKECVAHIINYGTMATKLAITDVGRIQEI 539 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL-----------------ADPSVDR 510 P ++V+ K+IP+ SL+ D+ + ++ P++ Sbjct: 540 PLNEVNNFKKIIPD------SLENYKDEKTGKTPKMNISNILKYSKEVQRWCKEKPAIAE 593 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD-------LPVTQFNMKWI 563 +++ + +LEG R HA GI+I L+ VP+ D + VTQ++ I Sbjct: 594 MMKYADQLEGTVRQTGVHACGIIIAPDDLTNFVPLSTAKEKDKSKKDTEVLVTQYDGHVI 653 Query: 564 EKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622 E+ GLIK DFL LKTL+++++++ + + + +D++ I ++D T+ L T+G+FQ Sbjct: 654 EQIGLIKMDFLALKTLSIMKETVANIKKSKNIDLDINNIDWNDKATFELFAQGNTIGVFQ 713 Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682 ES+GMR+ L ++P IED+IA+ +LYRPGP+D I + +RK+G+ I P+++ L Sbjct: 714 FESTGMRKYLMQLKPTSIEDLIAMNALYRPGPMDYIPDFIDRKHGRMPITYDIPIMEQYL 773 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 K+T G+ +YQEQVM +++ L+G++ ++D LR+AMGKKIK + + K +FI G NG Sbjct: 774 KDTYGITVYQEQVMLLSRQLAGFTRGQSDQLRKAMGKKIKAMLMELKPKFIDGGVGNGHD 833 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 + I I+E KFA Y FNKSH+ YAV++YQTA++KTHYP EF+AA++TL + ++ Sbjct: 834 RNILEKIWEDWEKFASYAFNKSHSTCYAVLAYQTAYLKTHYPAEFMAANLTLNKGKITEV 893 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADK- 860 KF ++ + I ++ P VN + F V I + L IK VG T I+E + Sbjct: 894 NKFMEECKIMKIPVLLPDVNESDMLFTVNTKGEIRFGLGGIKNVGEATVEGIIEERKNNG 953 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQSLDNIQKYAQWVEK-- 917 F S+ DF RV+ K N++ +ES +GALD F R QS + I +W K Sbjct: 954 SFKSIFDFLERVNLKSCNKKAIESFALSGALDSFTDMKREDYFQSEETINNLMEWGRKAQ 1013 Query: 918 -NRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 R++ ++F E+ T+ E +S R +E+ ++G Y S HPLD Y+ I Sbjct: 1014 AGRSSLQNSLFGEEEFDHTYPQFPKAEAWS---DLKRLNSEKDLIGIYLSAHPLDEYRSI 1070 Query: 975 LRKMGIKGYEESVATIR 991 ++ G S+A ++ Sbjct: 1071 IQ----YGCSHSIAELK 1083 >gi|116670142|ref|YP_831075.1| DNA polymerase III subunit alpha [Arthrobacter sp. FB24] gi|116610251|gb|ABK02975.1| DNA polymerase III, alpha subunit [Arthrobacter sp. FB24] Length = 1185 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 376/1056 (35%), Positives = 550/1056 (52%), Gaps = 84/1056 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA L + D+ PA+A TD LF A +F +KA GI+P Sbjct: 7 SFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKATDKGIKP 66 Query: 70 IIGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 IIG + + + Q ++ G + + LL G + L Sbjct: 67 IIGVEAYVTPGTARGDKSRVRWGEESQRKDDVSGGG-----SYTHMTLLSYNNVGMRNLF 121 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 S L + R+ L +EGLI TG SG + + A + Sbjct: 122 RASSIASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTRLRLGQYREALEAAAE 180 Query: 174 FKKLFGDRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 F+ +FG Y G D R +++LA LPLVATN+ + E D +AH+ L Sbjct: 181 FRDIFGAENYFCELMDHGLDIERRVTGDLLRLAKDLNLPLVATNDLHYTHEHDAKAHEAL 240 Query: 232 MAVAHSTVVSQKDRPR-------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284 +A+ + + + +YLK+ EM +F D PEA +NT+ IA RC Sbjct: 241 LAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEVS 300 Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 A +PRF E +D E + L + GL R QG K R++ D+E Sbjct: 301 FNTGANYMPRFPCPEGED----ETSWLVKEVDKGLHYRYPQGIPDK------VRKQADYE 350 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 L VI M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL L+F Sbjct: 351 LEVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLHHGLIF 410 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNPDR+SMPDFD+DF RR EVI YV KYG ERVA I+T+G+++ K AL+D R Sbjct: 411 ERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSRV 470 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-----------DSRFREARLADPSVDRLLE 513 L P+S + L K +P PA +AD FR+ DP ++ E Sbjct: 471 LGYPFSMGETLTKALP--PAVMAKDIPLADIQNKEAKRYSEAGDFRQLISTDPEAAKVFE 528 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 + +EGL R HAAG+++ P+ ++P+ R + +TQF+ E GLIK DF Sbjct: 529 TALGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDF 588 Query: 574 LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ LT++ +L+ + RG+ +DL + DD +Y LL TLG+FQL+ MR L Sbjct: 589 LGLRNLTIISDALENIKMNRGIDLDLETLELDDTASYELLARGDTLGVFQLDGGPMRSLL 648 Query: 633 EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQ 686 + M+PD EDI A+++LYRPGP+ + Y RKN ++++ IHP ++ L E T Sbjct: 649 KLMKPDNFEDISAVLALYRPGPMGANAHTDYALRKNKIQEVIPIHPELEEPLSEILGGTY 708 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQVM +AQ L+GY+L +AD+LRRAMGKK K E+DKQ F G NG S Sbjct: 709 GLIVYQEQVMAVAQKLAGYTLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAV 768 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 ++++L F+DY FNK+H+AAY VISY TA++K HY E++AA +T D+ +K + Sbjct: 769 KTLWDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYL 828 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSL 865 + R+ I ++PP VN ++F N I + + AI+ VG ++ A + + S Sbjct: 829 NECRRMGITVLPPDVNESALNFTPVGNDIRFGMGAIRNVGVNAVEAMVAAREKEGAYTSF 888 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 +D+ +V + N+R +ESL+ AGA D + R L + +++N + Sbjct: 889 KDYLMKVPAVVCNKRTIESLIKAGAFDSLNHHRRALAMIHEEAIDSVITLKRNEAIGQFD 948 Query: 926 IFAHEKGTFSDKITLEKFSVENSSV-------RFENEQRVLGFYFSGHPLDVYKPILRKM 978 +FA F + + S+E + + E+ +LG Y S HPL + +L + Sbjct: 949 LFA----GFDEAESEASLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGLLSQH 1004 Query: 979 GIKGYEESVATI-------RGNNIRLAAMVVSKQQK 1007 ++S+ +I G I +A M+ S ++ Sbjct: 1005 A----DQSITSIIAEDGPHDGAIITIAGMITSLSRR 1036 >gi|323344416|ref|ZP_08084641.1| DNA-directed DNA polymerase III alpha subunit [Prevotella oralis ATCC 33269] gi|323094543|gb|EFZ37119.1| DNA-directed DNA polymerase III alpha subunit [Prevotella oralis ATCC 33269] Length = 1235 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 384/1116 (34%), Positives = 571/1116 (51%), Gaps = 105/1116 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-------QKAC 63 +VHL VH+ YS+L+G ++ ++DK AD +A+TD +F EFS +K Sbjct: 4 YVHLHVHTYYSILDGQSKISYLVDKAIADGMRGMALTDHGAMFGIKEFSDYCEGVNKKRK 63 Query: 64 AAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A G +PI GC++ + + K + + + +++L GY+ LI+LVSR + Sbjct: 64 AEGKEPFKPIFGCEMYVARRH--KEDKEKDSGDKSGYHLIVLAKNYNGYKNLIKLVSRSW 121 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + D R L+ E LI+ + +G + + A K L +K++FG+ Sbjct: 122 V-DGYYYRPRTDHDDLERY-HEDLIVCSACIAGEVPSKILKGDIEGARKSLEWYKRVFGE 179 Query: 181 RLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 Y+ LQRH D +++ A + + L+ TN+ F +E EA Sbjct: 180 DFYLELQRHEVKDPSLIANRTTYPLQEKVNKILIEFAKEYGIKLICTNDVHFEDKETAEA 239 Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 HD L+ ++ + +R R T + K R+EM +F D+PE L NT+EI + Sbjct: 240 HDHLLCISTQADLDDPNRMRYTKQEWFKTRAEMNEVFYDMPEVLSNTLEILDKVEIYSIG 299 Query: 288 HAPILPRF--------------------IEKE-CDDIQKE-----EENELRNKAVAGLE- 320 H PI+P F + KE C D E EE ELR + + G + Sbjct: 300 HDPIMPFFPIPEDFGTEELWRQKFTKEDLYKEFCSDENGENMMSPEEGELRIRHLGGYDK 359 Query: 321 -----------VRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 +LA K Y + Q+ +R+ FEL+V+ M F GYFLIV DFI Sbjct: 360 IYRIKFEADYLAKLAYDGAKKVYGSPMPQEVIERVKFELHVMKTMGFPGYFLIVQDFINA 419 Query: 367 AKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 A+ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF D Sbjct: 420 ARNELEVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPDRISLPDIDTDFDDD 479 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 R V+++V +KYGHE A IIT+ S+ K +++DV R ++P + + LCK IP+ Sbjct: 480 GRGRVLQWVMDKYGHENCAHIITYSSMATKNSIKDVARVEKLPLEKSNALCKAIPDRLPD 539 Query: 486 PVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + AI +EA + DP ++ ++ LEG R HA G +I P+S Sbjct: 540 GMKMNLTNAIYCTPELKEAEASTDPRERNTIKYAKMLEGTVRGTGIHACGFIICRDPISN 599 Query: 542 LVPM-------YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRG 593 VP+ ++D + +PVTQ++ IE GLIK DFLGLKTL+ L++++ D G Sbjct: 600 WVPVSTADDPDFKDKK--VPVTQYDGHVIESTGLIKMDFLGLKTLSELKEAVKDVKISLG 657 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 ++VDL IP DD TY L T+G FQ ES GM++ L + P ED+IA+ +LYRPG Sbjct: 658 IEVDLDHIPLDDELTYKLYQEGRTIGTFQFESPGMQKHLRELHPTVFEDLIAMNALYRPG 717 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+ + P ++ LK+T G+ +YQEQVM +++ L+G++ E+D L Sbjct: 718 PMDYIPDFIRRKHDSSLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLAGFTRGESDAL 777 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 R+AMGKK K +D K +FI G K G + I+ KFA Y FNKSHA Y+ ++ Sbjct: 778 RKAMGKKKKAIVDAMKPKFIEGGKKKGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVA 837 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-D 832 YQTA+MK HYP E++AA MT ++++I K + + NI + P VN ++F V Sbjct: 838 YQTAYMKAHYPAEYMAAIMTRRRSDIKEITKLMDECKSMNIATLGPDVNESYLEFGVNKK 897 Query: 833 NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I + LAAIKG+G A I+ E + + + DF RVD +NR+ ESL +G Sbjct: 898 GEIRFGLAAIKGMGDAAAEAIIKEREKNGIYKDIFDFAQRVDFSYVNRKAFESLAVSGGF 957 Query: 892 DCFGYSRMQLL-------QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 D FG R Q L LD + +Y Q + +T ++F +D I + Sbjct: 958 DDFGLRREQYLGVNTKGDMFLDTLVRYGQMYQAGQTEAQNSLFGD-----ADAIEIATPP 1012 Query: 945 V----ENSSV-RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE---SVATIRGNNIR 996 + E S++ R E+ ++G Y S HPLD + IL M E + N I Sbjct: 1013 IPQGEEWSTIERLNRERELVGIYLSAHPLDDFSIILNSMCNTHCSELDNKAELAKKNEIT 1072 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +V + K T+ G G+VT + E FF Sbjct: 1073 IGGIVTGVKSKFTKTGKPCGFVTIEDYEGSGELAFF 1108 >gi|189461926|ref|ZP_03010711.1| hypothetical protein BACCOP_02593 [Bacteroides coprocola DSM 17136] gi|189431320|gb|EDV00305.1| hypothetical protein BACCOP_02593 [Bacteroides coprocola DSM 17136] Length = 1265 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 376/1144 (32%), Positives = 602/1144 (52%), Gaps = 131/1144 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YS+L+G S+ ++DK A+ IA+TD ++F EF Sbjct: 4 FVHLHVHTQYSILDGQASIPRLVDKAIANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGTN 63 Query: 61 ---------------------------KACAAGIQ--------PIIGCQLDIDMQDNLKM 85 AC ++ PIIGC++ + + ++ Sbjct: 64 GEIKDLKKKIAALESGKAESENPEVDLAACREQLEAAKKKLFKPIIGCEMYVARR---RL 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQSVRICLSWLQEIGTEG 143 T++ + +V+L +GY LI+LVS+ + ++ R+ L E EG Sbjct: 121 TDKEGKADQSGYHLVVLAKNLKGYHNLIKLVSKAWTEGFYMRPRTDRVEL----EKYHEG 176 Query: 144 LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRE 197 LI+ + G I R AE+ + +K LFGD Y+ LQRH+ ++ Y+ Sbjct: 177 LIVCSACLGGEIPRRITAGQFAEAEEAIQWYKNLFGDDFYLELQRHKATVPRANHETYKL 236 Query: 198 SQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 +VV + + + + LV TN+ F+ EE+ EAHD L+ ++ + +R T Sbjct: 237 QEVVNQKLVEYSKKYNIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQE 296 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFI 296 ++K R EM +F+D+PEAL NT +I + F +API+P +F Sbjct: 297 WMKTREEMNEVFADVPEALANTCDICDQVEFYSIDNAPIMPTFAIPEDFGTEEEYRKKFT 356 Query: 297 EKECDD--IQKEEENELRNKAVA--------GLE----VRLAQGAIAK----------GY 332 EK+ D Q E N + ++A A G E ++L +AK G Sbjct: 357 EKDLFDEFTQDENGNVVMDEASAKAKIERLGGYEKLYRIKLEADYLAKLAYDGARRRYGE 416 Query: 333 HAQD-YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYAL 390 H +D ++R+ FEL+++ M F GYFLIV DFI A+ ++ VGPGRGS AGS AY L Sbjct: 417 HLEDEVKERIKFELHIMKTMGFPGYFLIVQDFISAARNQLDVSVGPGRGSAAGSAVAYCL 476 Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA IIT+G Sbjct: 477 GITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYG 536 Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPS 507 ++ K A++DV R ++P S+ DRLCKL+P+ P ++L AIA + A ++ DP Sbjct: 537 TMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEVSSDPV 596 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWI 563 + ++ ++ LEG R+ HA G +I ++ VP+ ++ + VTQ+ I Sbjct: 597 LRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVI 656 Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622 E GLIK DFLGLKTL++++++L+ + Q +G+ +++ IP DD TY L + T+G FQ Sbjct: 657 EDTGLIKMDFLGLKTLSIIKEALENIKQSKGIILNIDEIPIDDPATYRLYSEGRTIGTFQ 716 Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+++ L Sbjct: 717 FESAGMQKYLRELQPTTFEDLIAMNALYRPGPMDYIPDFIDRKQGRKPIEYDIPVMEKYL 776 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 K+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 777 KDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGKKNGHD 836 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 I I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + N+ +I Sbjct: 837 PKILEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNISNITEI 896 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIM-EASA 858 K +++ + ++ P VN + F V GD I + L AIKGVG + + I+ E Sbjct: 897 TKLMDESKATGVNVLGPDVNESSLKFSVNRHGD--IRFGLGAIKGVGESAVQSILTERQK 954 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQK 910 + PF + DF RV+ NR+ +E+L AGA D F R ++ + + Sbjct: 955 NGPFKDIFDFVQRVNLSACNRKNIENLALAGAFDSFPNIHREDFFVKNAKDETFVEVLVR 1014 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 Y + ++ ++F E + + S + R E+ ++G Y S HPLD Sbjct: 1015 YGNKYQMDKAAAANSLFGGEHEVEIATPEIVRASAWSDLERLNKERELVGIYLSAHPLDE 1074 Query: 971 YKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + IL + + + ++ +++ L +V ++ T+ G G + + E Sbjct: 1075 FSVILENVCNTHMAQLSDLTPLQNHDLTLGGIVTGVREGYTKTGKPFGVAKVEDYSGTAE 1134 Query: 1029 ANFF 1032 FF Sbjct: 1135 FAFF 1138 >gi|256825465|ref|YP_003149425.1| DNA polymerase III subunit alpha [Kytococcus sedentarius DSM 20547] gi|256688858|gb|ACV06660.1| DNA polymerase III, alpha subunit [Kytococcus sedentarius DSM 20547] Length = 1183 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 372/1074 (34%), Positives = 558/1074 (51%), Gaps = 73/1074 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL H+ YS+L+GA ++++ PAIA TD ++F A EF K+ +P Sbjct: 9 NFVHLHNHTEYSMLDGAARIDDMFTVADEMGMPAIASTDHGSVFGAYEFWSKSRKFETKP 68 Query: 70 IIGCQLDIDM------QDNLKMTNQGKTPFP---TVPSIVLLVSTAEGYQRLIELVSRMY 120 I+G + + + +K + G+ + + T EG L S + Sbjct: 69 IVGVEAYLTPGTHRTDKTRVKFGDGGRNDVSGSGAYTHMTMWAETTEGMHNLFR-ASSLA 127 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 ++ R+ L G +G+I TG SG + A++ F+ +FG Sbjct: 128 SIEGFYFKPRMDRELLDRYG-KGIIATTGCPSGEVQTRLRLGQYDKAKEAAAEFRDIFGK 186 Query: 180 DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D + L H G D R+ + +++LA +LPLVATN+ + +ED +AH L+ V Sbjct: 187 DNFFCELMDH-GLDIERQVRADLLKLAKELDLPLVATNDLHYTHKEDAKAHGALLCVQSG 245 Query: 238 TVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHAPILPRF 295 + + +R + D YLK+ +EM ++ ++PEA +NT+ IA RC+ + +PRF Sbjct: 246 STLMDPNRFKFDSDEFYLKSAAEMRHLWREVPEACDNTLLIAERCNVEFTEGEGRYMPRF 305 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR-QRLDFELNVIARMKFS 354 C D +E + ++ GL R +G DY ++ +E +VI + Sbjct: 306 ---PCPD-GHDETSWFISEVQTGLARRFPEGV-------PDYALKQAAYEQDVIINKGYP 354 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+ L+FERFLNP+R S Sbjct: 355 GYFLVVADFINWAKENGIRVGPGRGSGAGSMCAYAMGITDLDPIPHGLIFERFLNPERAS 414 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFD+DF + RR EVI+YV KYG +RVA I+T+G+++AK AL+D R + P++ ++ Sbjct: 415 MPDFDVDFDERRRPEVIKYVTEKYGSDRVAMIVTYGTIKAKQALKDASRVMGFPFATGEK 474 Query: 475 LCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 L K +P D HP +AI FRE DP + + + LEGL Sbjct: 475 LTKAMPPAVMGKDIPLSGIFDEKHPRYAEAI----DFRELHANDPEAREVFDTAVGLEGL 530 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HAAG+++ PL L+P+ R +TQF+ E GL+K DFLGL+ LT+ Sbjct: 531 KRQWGVHAAGVIMASEPLIDLIPIMRREADGQIITQFDYPSCETLGLVKMDFLGLRNLTI 590 Query: 582 LQKSL-DFLAQRGVKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 L ++ + R +DL + D D Y LL TLG+FQL+ GMR L MQPD Sbjct: 591 LDDAIANIEMNREETIDLDALSKDMTDPAAYKLLARGDTLGVFQLDGGGMRSLLRLMQPD 650 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNN--RKNGKEKIVSIHP----LIDPMLKETQGVIIYQ 692 EDI A ++LYRPGP+ N RKNGK+ + IHP ++P+LK T G+IIYQ Sbjct: 651 NFEDISAALALYRPGPMGANAHTNFALRKNGKQPVDYIHPELTEALEPILKMTYGLIIYQ 710 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM+IAQ L+GY+L AD+LRRAMGKK KE +D + F +G NG SK ++ + Sbjct: 711 EQVMEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVNFEAGMLANGYSKDAVETLWGI 770 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L F+DY FNK+H AAY V+SY TA++K +Y E++AA +T D+ +K + + R+ Sbjct: 771 LLPFSDYAFNKAHTAAYGVVSYWTAYLKANYRAEYMAALLTSVRDDKDKSALYLGECRRM 830 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871 I+++PP VN +F I + L AI+ VG R I+ +K F S EDF + Sbjct: 831 GIKVLPPDVNESIANFAAVGQDIRFGLEAIRNVGGNVVRAIVATREEKGKFTSFEDFLRK 890 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 + N+R ++SL+ AGA D G+ R L + +K + E++FA Sbjct: 891 CPAVVCNKRTIDSLIKAGAFDDLGHQRQALATVHEAYVDALVGEKKEQERGQESLFASLM 950 Query: 932 GTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 G D + + ++ E+ +LG Y S HPL + L + + Sbjct: 951 GDGGDDASSIGGMPAIPDLEWDKQTLLAFEREMLGLYVSDHPLFGIEHALSRAS----DT 1006 Query: 986 SVATIR-------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 S+A + G + +A ++ K+ ++G T + E FF Sbjct: 1007 SIAHLNSEDGRPDGAEVTIAGLITQVVTKRNKRGELWAIATVEDLEGSIECLFF 1060 >gi|227544900|ref|ZP_03974949.1| possible DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300910073|ref|ZP_07127533.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri SD2112] gi|227185112|gb|EEI65183.1| possible DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300892721|gb|EFK86081.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri SD2112] Length = 1115 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 356/970 (36%), Positives = 531/970 (54%), Gaps = 55/970 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L V SSYSLL+ +++++ A+A+TD N L+ A+EF A AGI+PI Sbjct: 3 FTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +L + + + T+ K +V L GYQ L++L + L Q ++ + Sbjct: 63 LGLRLVVALNE----TDGTKL------DLVFLAKNQRGYQHLMDLST----LQQTRKDKK 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L+ Q G + + P F +Q +LT GD V L + Sbjct: 109 IPLTIAQISSLLGELFIII----PPQSTVFSILAQPTS--ILTELANLGDDDSVLLGVNS 162 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPR 247 D + + QL+ LPLV T+ +L+ D A VL A+ V KD R Sbjct: 163 RLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAI--DAGVELKDPTIEAR 220 Query: 248 VTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 HYL ++ ++V ++ L A + TVE+A C+ LQ AP+LP F + Q+ Sbjct: 221 RRGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQQ 280 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR+ + GL+ R +A G Q Y++RL EL VI M F YFLIV D + Sbjct: 281 Y----LRSLCIQGLKKR----RVAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMN 332 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A + I PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R MPD D+D + Sbjct: 333 FAHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDN 392 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEV++YV KYGH+RVAQIITFG+L AK +RDV R +P + RL +P+ H Sbjct: 393 RRDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHG-LH 451 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 A+ + + + +P L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ Sbjct: 452 VTLKDALKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPL 511 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 +D L +TQF +E GL+K DFLGLK L+++ L + Q DL I F+D Sbjct: 512 -QDGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNILQMIRQEDPNFDLQKINFND 570 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T GIFQ ESSG+R L + P EDI+A+ +LYRPGP++NI + RK Sbjct: 571 PLTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENISHFTARK 630 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 GKEKI P ++ +L T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K M Sbjct: 631 AGKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATM 690 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 + + +FI+GA+++G S +A +FE + +FA+YGFN+SHA AY++++++ A++K +YP Sbjct: 691 EDMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVYYPA 750 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F A M E N+EK+K+ DA+QF +++ P +N F + D +Y+ +AIKGV Sbjct: 751 AFFTALMNAET-NIEKLKRHVGDAKQFGVKVSGPRINISESSFLLHDGTVYFGFSAIKGV 809 Query: 846 GTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 I+E + F L +F +R+ + + ++E L+++GA D Y+R ++ Sbjct: 810 RRDFVAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMEYNRAEM--- 866 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGF 961 +D + K +E +FA F D N R E LG Sbjct: 867 IDALPKLISGIE---------LFAG-FANFDDPALQTAIDQRNEFPLLTRLTKENEYLGV 916 Query: 962 YFSGHPLDVY 971 Y SGHP+ Y Sbjct: 917 YLSGHPVTQY 926 >gi|171742474|ref|ZP_02918281.1| hypothetical protein BIFDEN_01586 [Bifidobacterium dentium ATCC 27678] gi|306822385|ref|ZP_07455764.1| DNA-directed DNA polymerase III alpha subunit [Bifidobacterium dentium ATCC 27679] gi|309802136|ref|ZP_07696245.1| putative DNA polymerase III subunit alpha [Bifidobacterium dentium JCVIHMP022] gi|171278088|gb|EDT45749.1| hypothetical protein BIFDEN_01586 [Bifidobacterium dentium ATCC 27678] gi|304554383|gb|EFM42291.1| DNA-directed DNA polymerase III alpha subunit [Bifidobacterium dentium ATCC 27679] gi|308221216|gb|EFO77519.1| putative DNA polymerase III subunit alpha [Bifidobacterium dentium JCVIHMP022] Length = 1195 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 356/1084 (32%), Positives = 571/1084 (52%), Gaps = 69/1084 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +FV L H+ YSLL+GA + +++ + PA+ ITD N+ A E A Sbjct: 1 MATSGNFVQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVN 60 Query: 65 AGIQPIIGCQ----------------LDIDMQDNLKMTNQGKTPFPT-----VPSIVLLV 103 AGI+PIIG + D + +L ++ + P + + + Sbjct: 61 AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWA 120 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 T EG L++ + L + + R+ L + ++G+I +G SG I Sbjct: 121 ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILSKY-SKGIIASSGCPSGIIQTRLLLGQ 179 Query: 164 SQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221 A + + +FG D Y+ H +R ++ +A PL+ATN+S ++ Sbjct: 180 FDEALRAAGELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVR 239 Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 ED A D ++ + + + + R + +YLK+ EM +F DLPEA +NT+EIA R Sbjct: 240 AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAER 299 Query: 281 CSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 C+ + H +P+F +C + E L+ K GLE R G + Sbjct: 300 CNVMFDDHEDGAFMPQF---DCPEGWDETSLFLK-KVEEGLEKRY------DGNPPIEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 ++ D+E VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP+ Sbjct: 350 KQADYECGVICQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPI 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 + L+FERFLNP+R+S+PD D+DF D R V+ YV KYG ++VAQ + +G+++ K AL Sbjct: 410 QHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQAL 469 Query: 459 RDVGRALQMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSV 508 +D R + +S +R+ K +P + P H + + + A+ FRE +DP Sbjct: 470 KDSARIMGFDFSMGERVTKALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDA 529 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAG 567 R+ + + +EGL R HA ++G P++ P+ R+D V T E G Sbjct: 530 KRVTDEAMGIEGLIRQTGVHACATIMGSEPITNTSPLLE--RTDGTVTTTLEYHTCETLG 587 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGL LT+++ +L+ + G ++D + IP DD TY LL+ TLG+FQL+S Sbjct: 588 LVKMDFLGLSNLTVIRDTLNNIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSD 647 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM-- 681 GMR L+ ++P DI AL++LYRPGP +D+ Y RKNG +KI IHP + +P+ Sbjct: 648 GMRSLLKTLKPSNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKE 707 Query: 682 -LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 L ET G+I+YQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G Sbjct: 708 VLDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHG 767 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 S+ A ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N + Sbjct: 768 YSQEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKD 827 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME--ASA 858 K + +AR+ IQ++ P VN ++ + + + L AI+ VG I++ S Sbjct: 828 KTALYLGEARRMGIQVLSPDVNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESG 887 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 + + DF RV LNRR++ESL+ AGA D +R L + +++ Sbjct: 888 HGKYVNFPDFVRRVPLSALNRRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRK 947 Query: 919 RTNKHENIF------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + ++F A + G +++ + + E+ +LG Y S HPL + Sbjct: 948 QAEGQFDLFSDLDDSAEQDGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQ 1007 Query: 973 PI---LRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + LR+M I + T+ G + +A ++ + ++ ++KG+ VT + + Sbjct: 1008 SVLSSLREMSIAHLIDRAGTMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQ 1067 Query: 1029 ANFF 1032 FF Sbjct: 1068 CMFF 1071 >gi|146345343|gb|ABQ23683.1| DNA polymerase III alpha subunit [Lactobacillus reuteri] Length = 1111 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 356/970 (36%), Positives = 531/970 (54%), Gaps = 55/970 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L V SSYSLL+ +++++ A+A+TD N L+ A+EF A AGI+PI Sbjct: 3 FTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +L + + + T+ K +V L GYQ L++L + L Q ++ + Sbjct: 63 LGLRLVVALNE----TDGTKL------DLVFLAKNQRGYQHLMDLST----LQQTRKDKK 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L+ Q G + + P F +Q +LT GD V L + Sbjct: 109 IPLTIAQISSLLGELFIII----PPQSTVFSILAQPTS--ILTELANLGDDDSVLLGVNS 162 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPR 247 D + + QL+ LPLV T+ +L+ D A VL A+ V KD R Sbjct: 163 RLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAI--DAGVELKDPTIEAR 220 Query: 248 VTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 HYL ++ ++V ++ L A + TVE+A C+ LQ AP+LP F + Q+ Sbjct: 221 RRGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQQ 280 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR+ + GL+ R +A G Q Y++RL EL VI M F YFLIV D + Sbjct: 281 Y----LRSLCIQGLKKR----RVAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMN 332 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A + I PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R MPD D+D + Sbjct: 333 FAHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDN 392 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEV++YV KYGH+RVAQIITFG+L AK +RDV R +P + RL +P+ H Sbjct: 393 RRDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHG-LH 451 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 A+ + + + +P L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ Sbjct: 452 VTLKDALKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPL 511 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 +D L +TQF +E GL+K DFLGLK L+++ L + Q DL I F+D Sbjct: 512 -QDGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNILQMIRQEDPNFDLQKINFND 570 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T GIFQ ESSG+R L + P EDI+A+ +LYRPGP++NI + RK Sbjct: 571 PLTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENISHFTARK 630 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 GKEKI P ++ +L T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K M Sbjct: 631 AGKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATM 690 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 + + +FI+GA+++G S +A +FE + +FA+YGFN+SHA AY++++++ A++K +YP Sbjct: 691 EDMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVYYPA 750 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F A M E N+EK+K+ DA+QF +++ P +N F + D +Y+ +AIKGV Sbjct: 751 AFFTALMNAET-NIEKLKRHVGDAKQFGVKVSGPRINISESSFLLHDGTVYFGFSAIKGV 809 Query: 846 GTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 I+E + F L +F +R+ + + ++E L+++GA D Y+R ++ Sbjct: 810 RRDFVAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMEYNRAEM--- 866 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGF 961 +D + K +E +FA F D N R E LG Sbjct: 867 IDALPKLISGIE---------LFAG-FANFDDPALQTAIDQRNEFPLLTRLTKENEYLGV 916 Query: 962 YFSGHPLDVY 971 Y SGHP+ Y Sbjct: 917 YLSGHPVTQY 926 >gi|226357239|ref|YP_002786979.1| DNA polymerase III subunit alpha [Deinococcus deserti VCD115] gi|226319229|gb|ACO47225.1| putative DNA-directed DNA polymerase (DNA polymerase III, alpha subunit) [Deinococcus deserti VCD115] Length = 1341 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 316/736 (42%), Positives = 453/736 (61%), Gaps = 62/736 (8%) Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 HA +R ++EL+VI M F YFLIVAD+I WAK +I VGPGRGSGAGS+ AYA+ I Sbjct: 476 HALVILRRAEYELSVINNMGFPDYFLIVADYINWAKDQDISVGPGRGSGAGSLVAYAMRI 535 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T++DPL F+LLFERFLNPDR+SMPDFDIDF RR EVI YVQ+KYG ++VAQI TFG++ Sbjct: 536 TNLDPLEFALLFERFLNPDRISMPDFDIDFNDARRSEVIAYVQDKYGEDKVAQIATFGTM 595 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512 +KA L+DV R + + Y++VD++ KLIP SL+ +AR A P + ++L Sbjct: 596 ASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLE---------QAREAVPDIAQML 646 Query: 513 ----------EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562 E +QKLEGL RHAS HAAG+VIG L+ LVP+ RD + V Q++MK Sbjct: 647 AEDGQLLEAYEFAQKLEGLTRHASVHAAGVVIGKTQLTDLVPVMRDTSGEGMVCQYDMKA 706 Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621 +E GLIK DFLGL+TL+ L ++ + + RG+++D IPFDD TY L++ T G+F Sbjct: 707 VEDIGLIKMDFLGLRTLSFLDEARRIMRESRGIEIDFDAIPFDDARTYELMSRGDTKGVF 766 Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH------ 675 QLE +G+ A ++P + DIIAL +LYRPGP++NI Y R +G E++ + Sbjct: 767 QLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGLEEVDYVRDGFPTS 826 Query: 676 -PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 ++ +L ET G+ +YQEQ+MQIA ++G+SL AD+LRRAMGKK EEM +Q++ F+ Sbjct: 827 AKYLEKILAETYGIPVYQEQIMQIASEVAGFSLGGADLLRRAMGKKDAEEMKRQRQIFVE 886 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 GA NG+ K A +F+LL FA+YGFNKSH+AAY VI+YQTAW+K +YPVEF+AA +T+ Sbjct: 887 GAGNNGVPKEEANKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAALLTV 946 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854 E + +K+ ++ DAR+ ++ ++PP +N DF V I + L AIKG+G + I+ Sbjct: 947 ERRDSDKVAEYVSDARKMDVHVLPPDINRSAPDFAVEGEEILFGLYAIKGLGEAAVQRIL 1006 Query: 855 EASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL-DNIQKYA 912 E + SL DFCSR+ +K NR+ +ESL+ +GA D FG R QLL SL D ++ A Sbjct: 1007 EERQRAGRYKSLADFCSRLGNKVCNRKAMESLIKSGAFDQFG-ERNQLLHSLEDALEDAA 1065 Query: 913 QWVEKN--RTNKHENIFAHEK-----------GTFSDKITLEKFSVENSSVRFENEQRVL 959 + N + +F E+ F+D LE+ S+E + L Sbjct: 1066 STADINAKAASGMSMMFGMEEVKKERPLRSGIPPFTD---LERLSIEKEA---------L 1113 Query: 960 GFYFSGHPLDVYKPI-------LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 G Y SGHPL+ ++ + + + +++VA + LA M+ +K T+ G Sbjct: 1114 GLYISGHPLEQHEGLREAASCRISDLDTWFTQQNVAPGKRLKAVLAGMIEGVVKKPTKSG 1173 Query: 1013 SRIGWVTFSEPAKEYE 1028 + ++ + + E Sbjct: 1174 GMMARFILADESGQTE 1189 Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 149/304 (49%), Gaps = 28/304 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNIL----DKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 F HL H+ YSLL+GA L ++L + PA+A+TD N+ A+ F A AAG Sbjct: 34 FAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGCTPALAMTDHGNMHGAVHFYNYAQAAG 93 Query: 67 IQPIIGCQLDI-----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 ++PIIG + + +D + + K F + LL EGYQ L L SR Y Sbjct: 94 VKPIIGYEAYVVPGQGTRRDRTRAQDGEKGIF----HLTLLARDFEGYQNLCRLSSRGY- 148 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + RI LQE +G+I +G + + + A+KRLL +++LFG+ Sbjct: 149 TEGYYYKPRIDHELLQE-HHKGVIAFSGCLGSEVQQLLLQGREEDAKKRLLWYRELFGEN 207 Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ +Q H ++ R + +++ A+ EL +VATN+ ++ + D AH+ L+A+ Sbjct: 208 YYIEIQDHGLPEQKRNNPILR-AWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKAT 266 Query: 240 VSQKDRPRVTPDH-YLKNRSEMVSIF--SDL-PEALENTVEIARRCSFILQV------HA 289 ++ ++R + D Y+KN EM + SD E +NT IA C+ L V Sbjct: 267 LADENRFKFPCDEFYVKNLEEMQAALPVSDWGEEPFDNTSAIADLCNVDLPVGKKRVYQM 326 Query: 290 PILP 293 P LP Sbjct: 327 PALP 330 >gi|120437353|ref|YP_863039.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803] gi|117579503|emb|CAL67972.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803] Length = 1461 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 362/1085 (33%), Positives = 573/1085 (52%), Gaps = 92/1085 (8%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 L++ P F HL HS +S+L+ +S+ +++ A + A+A+TD N+ A F ++ Sbjct: 257 LDEVP-FAHLHNHSQFSVLQSTISIPDLIAAAADEDMNAVALTDHANMMGAFHFVKEIGT 315 Query: 65 AG--------------------IQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSIVLL 102 ++ I+GC+ + + D + N + +V+L Sbjct: 316 YNKSVKEHNATAEENGEDLKKPLKGIVGCEFFVCENHADKSRKDNGYQ--------VVML 367 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 GY L ++ S+ Y D RI ++E E +I+LTG G + Sbjct: 368 AKNKNGYHNLAKMSSKAYT-DGFYYVPRIDKEVIREY-KEDIIVLTGNLYGEVPSKILNL 425 Query: 163 SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLS 221 + AE+ L+ +K+ FGD LY+ + RH D R + V V+ + H++ L+ATNN+ + Sbjct: 426 GEKQAEEALVWWKEEFGDDLYIEMMRHDQEDENRVNPVLVEFSKKHDVKLIATNNTYYWK 485 Query: 222 EEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENT 274 +ED AHD+L+ V +T + + R ++Y K+ S+M +F DLP A+ N Sbjct: 486 QEDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNTEYYFKSGSQMKKLFKDLPNAISNI 545 Query: 275 VEIARRCSFILQVHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQG 326 EI + +LP F E++ D K EN L++ G + R Sbjct: 546 QEIVDKVESFELARDVLLPAFEIPEEFLSEEDLADGGKRGENAFLKHITFEGAKKRYPD- 604 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 + +RL+FEL+VI + GYFLIV DFI+ A++ + VGPGRGS AGSV Sbjct: 605 ------ITPEIEERLNFELSVIENTGYPGYFLIVEDFIRAAREMGVSVGPGRGSAAGSVV 658 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV KYG +VAQI Sbjct: 659 AYCLWITNIDPMKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIKKYGANQVAQI 718 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD---SRFREARL 503 IT+G++ AK+++RD R L +P DR+ KLIPN L A+ D S+FR + Sbjct: 719 ITYGTMAAKSSIRDTARVLDLPLMDSDRIAKLIPNTKLG--KLFAMDDKTIKSKFRGDEI 776 Query: 504 ADPSVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 ++ L IS+ LEG R+ HA G++I ++ VP+ Sbjct: 777 E--KINELFNISEGDDLEAETVNQARILEGSVRNTGIHACGVIITPGDITNYVPVSVAKD 834 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609 SDL VTQF+ +E AGL+K DFLGLKTLTL++ ++ + R + +D P DD ETY Sbjct: 835 SDLYVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKGRHDIDLDPDSFPLDDEETY 894 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T+GIFQ ES GM++ ++ ++P +D+IA+ +LYRPGP++ I + RK+G E Sbjct: 895 KLFQRGETVGIFQYESPGMQKHMQSLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDE 954 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +I P ++ L+ET G+ +YQEQVM ++Q L+G+S EAD+LR+AMGKK+ + + K Sbjct: 955 EISYDLPEMEEYLEETYGITVYQEQVMLLSQKLAGFSKGEADMLRKAMGKKLVALLAQLK 1014 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI G ++ G + I++ FA Y FNKSH+ YA I+YQTA++K HYP E++A Sbjct: 1015 PKFIEGGNEKGHPAEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMA 1074 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTT 848 A ++ M++++ + F ++ ++ + ++ P VN F V DN + + + AIKGVG+ Sbjct: 1075 AVLSNNMNDIKSVTFFMEECKRMKLNVLGPDVNESYYKFSVNKDNAVRFGMGAIKGVGSG 1134 Query: 849 TARHIMEASADK--PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQS- 904 I+E K P+ S+ D R+D + N++ E+L AG D FG + R Q Sbjct: 1135 AVATIVENRKTKEGPYRSIFDMAKRIDLRSANKKAFENLALAGGFDGFGNTHRAQYFHDD 1194 Query: 905 ------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L+ + KYAQ ++++ + ++F + + + + E+ V Sbjct: 1195 GNGMSFLEKVVKYAQKFQESQNSSQVSLFGEASDVQIPEPEVPGCEEWGTMEKLRREKEV 1254 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 +G Y SGHPLD +K + + + ++ + L +VV Q + ++ G G Sbjct: 1255 VGIYISGHPLDDFKIEMSYFSNGKLSDCRDLESVVNRELTLGCVVVDVQHRVSKNGK--G 1312 Query: 1017 WVTFS 1021 W F+ Sbjct: 1313 WAIFT 1317 >gi|227540116|ref|ZP_03970165.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227239977|gb|EEI89992.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 1474 Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust. Identities = 357/1104 (32%), Positives = 573/1104 (51%), Gaps = 102/1104 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 F HL HS +S+L+ +S+ ++D ++ PA+A+TD N+ A F + Sbjct: 259 FAHLHNHSQFSVLQSTISIGGLVDAAVKNKMPAVALTDHGNMMGAFHFVSRVLGHNKDAE 318 Query: 67 -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 I+PI+GC+ I +D+L + + +V L GY Sbjct: 319 TKNQELIDNGEAPTETIIKPIVGCEFFI-CEDHLDKSRKDNGY-----QVVFLAKNKNGY 372 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S Y +G V + E E +I+L+G G I AE+ Sbjct: 373 HNLAKMSSVAYT--KGFYYVPRIDKKVVEQYKEDIIVLSGNLQGEIPNKILNIGENQAEE 430 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228 L+ +K+ FG+ Y+ + RH D R ++ +V LA H + ++ TNN+ ++++ D AH Sbjct: 431 ALIWWKEQFGEDFYIEVMRHGQEDENRVNETLVSLARRHGVKVIGTNNTYYVNKADAHAH 490 Query: 229 DVLMAVAHSTVVSQ-KDRPR------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 D+L+ V +S K R R ++Y K+ EM +F+DLPEA+ N EI + Sbjct: 491 DILLCVKDGEKLSTPKGRGRGFRFGLPNQEYYFKSAPEMKKVFADLPEAIVNIQEIIDKV 550 Query: 282 SFILQVHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYH 333 +LP+F ++++ +D K EN+ L + G E R A+ Sbjct: 551 EIFKLNRDVLLPKFEIPEQFQVQEDNEDGGKRGENKYLAHLTYVGAEKRYAE-------I 603 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 D R+RLDFEL I + + GYFLIV DFI A+ + VGPGRGS AGS AY L IT Sbjct: 604 TDDIRERLDFELATIEKTGYPGYFLIVQDFIAEARNMGVSVGPGRGSAAGSAVAYCLGIT 663 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 +IDP+++ LLFERFLNPDR+SMPD DIDF + R V++YV +KYG +VAQIIT+G++ Sbjct: 664 NIDPIQYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGASQVAQIITYGTMA 723 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADP--SVD 509 AK++++D R L +P ++ + + KLIPN + L I D+ +EA A+ +V Sbjct: 724 AKSSIKDTARVLDLPLAEANEIAKLIPN-----LKLSKIFNMDEKALKEALRAEELEAVH 778 Query: 510 RLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 +L+ ++ LEG R+ HA G++I ++ VP+ SDL VT Sbjct: 779 KLISLADGAGLEAETIKQARVLEGSMRNTGIHACGVIITPDDITNFVPVSLAKDSDLYVT 838 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTK 615 QF+ +E AGL+K DFLGLKTLTL++ ++ + R + +D P DD TY L Sbjct: 839 QFDNSVVESAGLLKMDFLGLKTLTLIKDTVANVKLRHNLDLDPDNFPIDDQLTYELFQRG 898 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675 T+G+FQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RK+G E IV Sbjct: 899 ETIGVFQYESPGMQKHMKDLKPTVFADLIAMNALYRPGPMEYIPSFIKRKHGIEPIVYDL 958 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 + LKET G+ +YQEQVM ++Q L+G+S +ADVLR+AMGKK K +DK K +F++ Sbjct: 959 DACEEYLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQKAVLDKMKPKFVAQ 1018 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A + G + + I+ FA Y FNKSH+ YA ++YQTA++K H+P E++AA ++ Sbjct: 1019 AVEKGHNAKVLEKIWTDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHFPAEYMAAVLSNN 1078 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM 854 M++++++ F ++ R+ ++++ P VN F V D I + + A+KGVG I+ Sbjct: 1079 MNDIKQVTFFMEECRRMGLEVLGPDVNESHYKFTVNDRGAIRFGMGAVKGVGAGAVDTIV 1138 Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLLQ-------SLD 906 + P+ S+ D R+D + N++ ESL +AG D F + R Q L+ Sbjct: 1139 QTREGNPYKSVFDMAKRIDLRAANKKAFESLAYAGGFDSFKDTHRAQYFHVDGDNSTGLE 1198 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 K+ Q ++N ++ ++F + L + + E+ V+G Y + H Sbjct: 1199 KAVKFGQRHKENESSAQASLFGGGGSAELPEPVLAPCPQWGLIEKLKYEKDVIGIYLTSH 1258 Query: 967 PLDVYK--------------PILRKMGIKGYEESV----ATIRGNNIRLAAMVVSKQQKK 1008 PLD YK ++ K+ EE V I+ + + ++ + + Sbjct: 1259 PLDNYKFEIKHFCQNNVSELQLINKVKASEVEEDVLLEFNKIKNKEVIIGGIIAAANHRV 1318 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 ++ G G + + + +E F Sbjct: 1319 SKNGKPFGILVIEDYSDSFEMMVF 1342 >gi|320333087|ref|YP_004169798.1| DNA polymerase III subunit alpha [Deinococcus maricopensis DSM 21211] gi|319754376|gb|ADV66133.1| DNA polymerase III, alpha subunit [Deinococcus maricopensis DSM 21211] Length = 1332 Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust. Identities = 308/670 (45%), Positives = 428/670 (63%), Gaps = 36/670 (5%) Query: 325 QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 + A A HA +R ++EL+VI M F YFLIVAD+I WAK + I VGPGRGSGAGS Sbjct: 460 ESACAHHRHALVLLRRAEYELSVINNMGFPDYFLIVADYINWAKDHGISVGPGRGSGAGS 519 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 + AYA+ IT++DPL F LLFERFLNPDR+SMPDFDIDF RR EVI YVQ KYG ++VA Sbjct: 520 LVAYAIRITNLDPLEFELLFERFLNPDRISMPDFDIDFNDARRGEVITYVQQKYGDDKVA 579 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-----------QAIA 493 QI TFG++ +KA L+DV R + + Y++VD++ KLIP SL Q + Sbjct: 580 QIATFGTMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQARESVPDIQQMLD 639 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 +D++ REA E +QKLEGL RHAS HAAG+VIG L+ LVP+ RD + Sbjct: 640 EDAQLREA----------YEFAQKLEGLTRHASVHAAGVVIGKTQLTDLVPVMRDTSGEG 689 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612 V Q++MK +E GLIK DFLGL+TL+ L ++ + + +G++VD IPFDD T+ LL Sbjct: 690 MVCQYDMKAVEDIGLIKMDFLGLRTLSFLDEAKRIMRESKGIEVDFDAIPFDDEATFDLL 749 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 + T G+FQLE +G+ A ++P + DIIAL +LYRPGP++NI Y R +G E++ Sbjct: 750 SRGDTKGVFQLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGLEQVD 809 Query: 673 SIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 + ++ +L ET G+ +YQEQ+MQIA ++G+SL AD+LRRAMGKK EEM Sbjct: 810 YVRDGFPNSAQWLEKILAETYGIPVYQEQIMQIASEVAGFSLGGADLLRRAMGKKDAEEM 869 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +Q++ F+ GA NG+ K +F+LL FA+YGFNKSH+AAY VI+YQTAW+K ++PV Sbjct: 870 KRQRQIFVDGAEGNGVPKDEGNKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANHPV 929 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+AA +T+E + +K+ ++ DAR+ + ++PP +N DFKV IY+ L AIKG+ Sbjct: 930 EFMAALLTVERRDSDKVAEYASDARKMGVTVLPPDINRSGADFKVVGQDIYFGLYAIKGL 989 Query: 846 GTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G I+ E F SL DFC+R+D+K NR+ LESL+ +GA D FG R QLL S Sbjct: 990 GENAVLRILDERERGGRFRSLADFCARIDNKTCNRKGLESLIKSGAFDAFG-ERQQLLSS 1048 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFY 962 L++ +AQ + + +F + K+ + +VE S + E+ LG Y Sbjct: 1049 LEDAIAWAQGAAAMLNSGMDALFGMAETAPEPKL---RANVEPLSELAKLALEKEALGLY 1105 Query: 963 FSGHPLDVYK 972 SGHPL+ ++ Sbjct: 1106 ISGHPLEQHE 1115 Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 147/302 (48%), Gaps = 24/302 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILD---KIAADQ-QPAIAITDTNNLFSALEFSQKACAAG 66 F HL H+ YSLL+GA L ++L ++ D PA+A+TD N+ A+ F A G Sbjct: 24 FAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPDGCTPALAMTDHGNMHGAVHFYNYATGMG 83 Query: 67 IQPIIGCQ-LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 ++PIIG + + + +G+ + + LL EGYQ L L SR Y + Sbjct: 84 VKPIIGYEAYVVPGVGTRRERTRGQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYT-EGY 142 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 RI LQE +G+I +G + + A++RL+ ++ LFG+ ++ Sbjct: 143 YYKPRIDHELLQE-HHKGVIAFSGCLGSEVQQLLLQGREADAKQRLMWYRDLFGENYFIE 201 Query: 186 LQRHRGYDRYRESQVVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H ++ R + +++ A+ EL +VATN+ ++ + D AH+ L+A+ ++ + Sbjct: 202 IQDHGLPEQKRNNPILR-AWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLADE 260 Query: 244 DRPRVTPDH-YLKNRSEM-----VSIFSDLPEALENTVEIARRCSFILQV------HAPI 291 +R + D Y+KN EM VS + + P +NT IA C+ L V P Sbjct: 261 NRFKFPCDEFYVKNLEEMQAALPVSEWGEEP--FDNTAMIADLCNVDLPVGKKRVYQMPA 318 Query: 292 LP 293 LP Sbjct: 319 LP 320 >gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237] gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237] Length = 1479 Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust. Identities = 364/1098 (33%), Positives = 569/1098 (51%), Gaps = 102/1098 (9%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ------ 60 ++ +F HL H+ +S+L+ +S+ ++ A + PA+A+TD N+ A F Sbjct: 257 ETANFSHLHNHTQFSILQSTISIPALISAAAKAKMPAVAMTDHANMMGAFHFVSGVINHN 316 Query: 61 --------------KACAAGI------------------QPIIGCQLDIDMQDNLKMTNQ 88 +A G PIIGC+ + +D+ TN Sbjct: 317 KGVVSRNEENLIRFEATKNGTLKEGEEALEELPEPEIEITPIIGCEFQV-CEDH---TN- 371 Query: 89 GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148 K+ IV+L T +GY L ++ S ++ GK V + E E +I+LT Sbjct: 372 -KSQKDNGYQIVMLAKTKKGYLNLAKMSSIAFV--SGKYYVPRIDRKVVEQYKEDIIVLT 428 Query: 149 GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTH 207 G G + AE+ LL +K+ FG LY+ + RH D R +QV +Q A H Sbjct: 429 GNLYGEVPSKVLNVGENQAEEALLWWKETFGADLYIEIMRHGQEDEDRANQVLIQFAKKH 488 Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEM 260 ++ L+ATNN+ ++ +E+ AHD+L+ V +T + + R ++Y K+ +M Sbjct: 489 DVKLLATNNTYYVDKENAHAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSDQM 548 Query: 261 VSIFSDLPEALENTVEIARRCSFILQVHAPILP--------RFIEKECDDIQKEEENELR 312 +F D+PEA+ N E+ + +LP +F E + D ++ E LR Sbjct: 549 KELFKDIPEAIINIQEVVDKVETFTLARDVLLPAFDIPEEFQFAEDKLDKGKRGENKFLR 608 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + G + R + A +RLDFEL VI + + GYFLIV DFI+ A+ ++ Sbjct: 609 HITYEGAKKRYGEITPA-------IDERLDFELKVIEKTGYPGYFLIVEDFIRAARAMDV 661 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF + R V+ Sbjct: 662 SVGPGRGSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMD 721 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--DPAHPVSLQ 490 YV NKYG +VAQIIT+G++ AK+A+RD RAL +P DR+ KLIP+ + + Sbjct: 722 YVINKYGANQVAQIITYGTMAAKSAIRDTARALDLPLQDSDRMAKLIPDMSKLKKIIGVD 781 Query: 491 AIADDSRFREARLADPSVDRLLEISQK-------------LEGLYRHASTHAAGIVIGDR 537 S+FR L ++ LL IS+ LEG R+ HA G++I Sbjct: 782 EKILKSKFRAEDLI--KINELLAISEGDGLEAETLNQAYILEGSVRNTGIHACGVIITPD 839 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596 +++ VP+ S++ TQF+ +E AGL+K DFLGLKTLTL++ ++ + A+ GV + Sbjct: 840 DITKFVPVALAKDSEMYCTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVTL 899 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D P DD +TY L T+G+FQ ES GM++ + ++P D+IA+ +LYRPGP++ Sbjct: 900 DPENFPLDDVKTYELFQRGETVGVFQYESPGMQKHMRALKPTVFADLIAMNALYRPGPME 959 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + RK+G E+IV + L ET G+ +YQEQVM ++Q L+ ++ EADVLR+A Sbjct: 960 YIPSFIARKHGTEEIVYDLDANEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKA 1019 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK K +DK K +FI AS G + I++ FA Y FNKSH+ YA I+YQT Sbjct: 1020 MGKKQKYVLDKMKPKFIEQASAKGHAADKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQT 1079 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRI 835 A+ K HYP E++AA ++ M++++++ F ++ ++ + ++ P VN F V D + Sbjct: 1080 AYCKAHYPAEYMAAVLSNNMNDIKQVTFFMEECKRMGLDVLGPDVNESYYKFAVNDAGAV 1139 Query: 836 YYSLAAIKGVGTTTARHIMEASADK--PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + + A+KGVG I+E D+ PF S+ DF R+D + N++ ESL AG D Sbjct: 1140 RFGMGAVKGVGRGAVETIVEHRKDEEGPFKSVFDFAKRIDLRAANKKAFESLAVAGGFDS 1199 Query: 894 FGYS-RMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 FG + R Q + L+ KY +++ + ++F + + Sbjct: 1200 FGDTHRAQYFHAEGDGVTFLEKTIKYGAKFQESENSSQVSLFGEASDVQIPEPEVPPCEE 1259 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVS 1003 + + E+ V+G Y SGHPLD +K ++ + +I + A ++ Sbjct: 1260 WGTMEKLRREKEVVGIYISGHPLDDFKSEVKSFCNASLSNLNDLESIVNREVSFAGVIAD 1319 Query: 1004 KQQKKTRKGSRIGWVTFS 1021 Q + ++ G GW F+ Sbjct: 1320 VQHRVSKNGK--GWAMFT 1335 >gi|308235821|ref|ZP_07666558.1| DNA polymerase III subunit alpha [Gardnerella vaginalis ATCC 14018] gi|311114403|ref|YP_003985624.1| DNA-directed DNA polymerase III subunit alpha [Gardnerella vaginalis ATCC 14019] gi|310945897|gb|ADP38601.1| DNA-directed DNA polymerase III alpha subunit [Gardnerella vaginalis ATCC 14019] Length = 1183 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 358/1066 (33%), Positives = 571/1066 (53%), Gaps = 56/1066 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL H+ YSLL+GA + +++ + PA+AITD N+ A E A AGI+P Sbjct: 7 NFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKP 66 Query: 70 IIGCQL----DIDMQDNLKM-------TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IIG + + QD ++ + + + + + EG L++ S Sbjct: 67 IIGIEAYVTPETARQDKSRVHWGTEAQRSDDVSGGGLITHMTMWAENDEGLTNLLKASSI 126 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 L + + R+ L ++G+I +G SG I A + F+ +F Sbjct: 127 ANLEGRVMRYPRMDKDVLSRY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIF 185 Query: 179 G-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G D ++ L H R ++ ++++A PL+ATN+ ++ EED EA D ++ + Sbjct: 186 GRDNFFIELMNHGLSIETRVTKDLLEIAKRLNAPLLATNDLHYVHEEDREAQDAMLCINS 245 Query: 237 STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--VHAPILP 293 + + DR + +YLK+ +M +F + PEA +NT+EIARRC+ + +P Sbjct: 246 GSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAFMP 305 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 +F +C + E L+ K GLE R + ++ D+E VI +M+F Sbjct: 306 QF---DCPEGWDETSLFLK-KVEEGLERRYNNNV------PMEVLKQADYECGVICQMQF 355 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ L+FERFLNP+R+ Sbjct: 356 CGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERV 415 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 S+PD D+DF D R +V+ YV KYG ++VAQ + +G+++ K AL+D R + +S + Sbjct: 416 SLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGE 475 Query: 474 RLCKLIPNDP-AHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524 ++ K++P +S I D+ FRE DP R+ E ++ +EGL R Sbjct: 476 KITKILPPPKNGKDMSFHDIFDEKSKRYAEAREFREMYDTDPDTKRITEEAKGIEGLIRQ 535 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HA ++G P++ P+ R+D + T F E GL+K DFLGL LT+++ Sbjct: 536 TGVHACATIMGSEPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIR 593 Query: 584 KSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 +L + G + +D + IP DD ETY LL TLG+FQL+S GMR L ++PD D Sbjct: 594 DTLKNVEHNGKEPIDYTKIPLDDKETYQLLARGDTLGVFQLDSDGMRALLRTLKPDNFND 653 Query: 643 IIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM---LKETQGVIIYQEQVM 696 I AL++LYRPGP +D+ Y RKNG ++I IHP + +P+ L ET G+I+YQEQV Sbjct: 654 ISALIALYRPGPMDMDSHTNYAKRKNGLQEITPIHPEVAEPLKDVLGETYGLIVYQEQVQ 713 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 A++L+GYSL +ADVLRRAMGKK E + K+K F G ++G S+ A ++++L F Sbjct: 714 SAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFKGMKEHGYSEEAAQAVWDVLVPF 773 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 + Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + E N +K + +AR+ I++ Sbjct: 774 SGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIRV 833 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME--ASADKPFDSLEDFCSRVDS 874 + P +N +++ + + + L A++ VG I+ S F +DF +RV Sbjct: 834 LQPDINESVLEYSAVGDVVRFGLGAVRNVGDKAVNDIISERESERGKFIDFKDFVNRVSF 893 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 LNRR++ESL+ +GA D R + + + + +++ + ++FA + Sbjct: 894 AALNRRLVESLIKSGAFDSINPCRRAIFEICEPLIDSVISIKRRQAGGQFDLFADLDDSD 953 Query: 935 SD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGYEESV 987 SD +I + + + E+ +LG Y S HPL + LR+M I Sbjct: 954 SDLGDAQINIPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLAGLREMSIAQLLNRA 1013 Query: 988 ATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+ N + LA +V S ++ ++KG+ VT + + FF Sbjct: 1014 KTMGENQQVTLAGLVTSVDRRVSKKGNAWAIVTIEDMESSIQCMFF 1059 >gi|256396217|ref|YP_003117781.1| DNA polymerase III subunit alpha [Catenulispora acidiphila DSM 44928] gi|256362443|gb|ACU75940.1| DNA polymerase III, alpha subunit [Catenulispora acidiphila DSM 44928] Length = 1189 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 382/1075 (35%), Positives = 577/1075 (53%), Gaps = 66/1075 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL VH+ YS+L+GA L ++ ++ PA+A+TD N+ A +F+++A AAGI Sbjct: 2 SDSFVHLHVHTEYSMLDGAARLKDMFKHASSLGMPAVAMTDHGNMHGAADFTKQAMAAGI 61 Query: 68 QPIIGCQLDIDMQD--NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELV 116 +PI+G + + + N K G+ P + + G Q L +L Sbjct: 62 KPILGIEAYVAPESRYNAKPVRWGQ-PHQKSDDVSGGGLYGHATIWAQNVTGLQNLTKLS 120 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 SR + ++ R+ + E + GL+ TG SG + A +++ Sbjct: 121 SRAFTEGFARKYPRMDAELMAE-HSAGLMATTGCPSGFVQTRLRLGHFDEALAAAGQYQE 179 Query: 177 LFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +FG + Y+ L H G D R RE ++ + +P V TN+S + E+ AHD L+ Sbjct: 180 IFGKENFYLELMDH-GLDIETRVREG-LLDIGRKLNIPPVVTNDSHYTYREESAAHDALL 237 Query: 233 AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD--LPEALENTVEIARRCS-FILQVH 288 + ++ ++ DR R D +YLK+ EM +I +D E NT+ IA + + + + Sbjct: 238 CIQTASNIADPDRFRFGGDGYYLKSADEMRAINTDDIWQEGCRNTLAIAEKVNPEGMFAY 297 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI-AKGYHAQDYRQRLDFELNV 347 ++PR E D E++ R A GL R G K YHA RL+FEL+V Sbjct: 298 RNLMPRL---EAPDGLTEDQ-WFRKLAYDGLNKRFPAGVPDEKVYHA-----RLEFELDV 348 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I M F YF++VADFI WAK N I VGPGRGS AGS+ A++L ITD+DP+ F LLFERF Sbjct: 349 ILSMGFPSYFIVVADFINWAKDNGIAVGPGRGSAAGSLVAWSLGITDVDPIPFDLLFERF 408 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNPDR++ PD DIDF RR +VIRYV KYG ++VA I TFG ++AKAA++D R L Sbjct: 409 LNPDRVTPPDIDIDFDDRRRSDVIRYVTEKYGEDKVAMIATFGRIKAKAAIKDSSRILGY 468 Query: 468 PYSQVDRLCKLIPND---PAHPVSLQAIADDSRFREAR------LADPSVDRLLEISQKL 518 P++ DR+ K +P D + P+S ++ R+ EA D V ++++ + + Sbjct: 469 PFAMGDRITKAMPPDVMGKSMPLSGVFDSNHPRYGEAGEIRGMYEQDADVKKVIDTGRGV 528 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R HAAG++I ++ VP+ + +TQF+ E+ GLIK DFLGL+ Sbjct: 529 EGLIRQPGVHAAGVIISPETITDHVPVMMRPADGVIITQFDYPTCEEIGLIKMDFLGLRN 588 Query: 579 LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ +L+ + G +++ P DD TY LL TLG+FQL+ +R L M+P Sbjct: 589 LTIITDALNNVETTTGKRLNTLEFPLDDPLTYELLCKGDTLGVFQLDGGPLRSLLRQMRP 648 Query: 638 DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV----IIY 691 D ED+ A+++LYRPGP+ ++ + Y RKN ++ I IHP ++ LKE GV IIY Sbjct: 649 DNFEDVSAIIALYRPGPMGANSHINYAERKNNRQPITPIHPELEAPLKEVLGVSYGLIIY 708 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVM A++L+GYSL++AD+LRRAMGKK KE +DK+ F G + NG S +++ Sbjct: 709 QEQVMAAARVLAGYSLAQADLLRRAMGKKKKEVLDKEYVGFEKGMADNGYSAQATKAVWD 768 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L FADY FNKSH+ AY I+YQTA++K HYP E++AA +T + ++ + + R+ Sbjct: 769 VLVPFADYAFNKSHSVAYGFIAYQTAYLKAHYPAEYMAALLTSTATDKDRSAIYLGECRR 828 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 I+++PP VN F I + L AI+ VG I+ A F S DF + Sbjct: 829 MGIKVLPPDVNDSLHQFTPVGTDIRFGLGAIRNVGENVVTSIIATRKAKGRFTSFNDFLA 888 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH- 929 +VD N+R +ESL+ AGA D G+SR L++ + V+K +++F Sbjct: 889 KVDLPVCNKRTIESLIKAGAFDSLGHSRRGLIEQHERAIDSVVDVKKQEALGQDSLFGSL 948 Query: 930 ---EKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 + + I L +E + V E+ +LG Y S HPL + +L + Sbjct: 949 MDGGQEAITGGIELAFSDIEWDKKVLLGFEREMLGLYVSDHPLSGVENLLASKA----DC 1004 Query: 986 SVATIRGNNIR-------LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 S+A++ G N R +A +V +K T++G+ + + E FFP Sbjct: 1005 SIASLTGENDRADGSIVTIAGLVAGLARKVTKQGNTWAAASVEDLEGGIETMFFP 1059 >gi|227545586|ref|ZP_03975635.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213989|gb|EEI81826.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516113|emb|CBK69729.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp. longum F8] Length = 1189 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 366/1073 (34%), Positives = 570/1073 (53%), Gaps = 68/1073 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++P Sbjct: 11 NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 70 Query: 70 IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + QD ++ Q + I L AE + L+ L+ + Sbjct: 71 IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 130 Query: 122 LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + +R + + T +G+I +G SG I + A + F+ +FG Sbjct: 131 ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFEEALRAAGEFQDIFG 190 Query: 180 -DRLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 D ++ L H E+QV + +A + PL+ATN+S ++ ED +A D ++ + Sbjct: 191 KDNFFIELMDH---GLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCI 247 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--API 291 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H Sbjct: 248 NSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAF 307 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P+F E D E + K GLE R G D ++ D+E VI +M Sbjct: 308 MPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQM 357 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 +F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+ Sbjct: 358 QFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPE 417 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+S+PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S Sbjct: 418 RVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 477 Query: 472 VDRLCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519 +++ K +P PA +SL I D + FRE +DP R+ E ++ +E Sbjct: 478 GEKITKALP--PAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIE 535 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKT 578 GL R HA ++G P++ P+ R+D + T F E GL+K DFLGL Sbjct: 536 GLIRQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSN 593 Query: 579 LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ +L + G +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++P Sbjct: 594 LTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKP 653 Query: 638 DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691 D DI AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIY Sbjct: 654 DNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIY 713 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + +++ Sbjct: 714 QEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWD 773 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ Sbjct: 774 ILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARR 833 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDF 868 IQ++ P VN ++ + + + L AI+ VG I+ A + P F + DF Sbjct: 834 MGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDF 892 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 RV LNRR++ESL+ AGA D +R LL + +++ + ++F+ Sbjct: 893 IRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFS 952 Query: 929 HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGI 980 + ++ +T+ + + E+ +LG Y S HPL + I LR+M I Sbjct: 953 DAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSI 1012 Query: 981 KGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1013 AHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065 >gi|259503193|ref|ZP_05746095.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus antri DSM 16041] gi|259168850|gb|EEW53345.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus antri DSM 16041] Length = 1114 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 359/1040 (34%), Positives = 558/1040 (53%), Gaps = 71/1040 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 ++V L+VHSSYSLL+ + +++ A+A+TD N L+ A++F A AG++P Sbjct: 2 NYVPLEVHSSYSLLQSPTRIPDLVKAAKQRGYTALALTDENVLYGAVDFYNTARQAGLKP 61 Query: 70 IIGCQLDIDMQD----NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 ++G Q+ + D LK+T LL GY+ L++L +R +Q Sbjct: 62 LLGLQIMASLGDVAGSQLKLT--------------LLAKNERGYRNLMDLSTRQQTTNQR 107 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-- 183 + I + L + + +++L P+ + N + + K++ G LY Sbjct: 108 AEPATI--AELSPLLKDLVVIL------PV-QLTVINLVRQGSDWIDPLKQIAGSSLYLG 158 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +NLQ D + + + A + L AT +L+ D A L A+ ++ Sbjct: 159 INLQ----LDEVERASLQRFAQAAGVLLAATTPVDYLNASDLFAAKTLQAIGQGAQLTDL 214 Query: 244 D-RPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 D + T DHYL R ++ + + L A+ NT IA +C+ L+ AP+LP + Sbjct: 215 DAQVAATGDHYLPARQQIEQAYQQAGLAAAIANTAAIADQCNVELKFQAPVLPHYQTPHG 274 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + L +AGL+ R +A GY A DYRQRLD EL VI RM F YFLIV Sbjct: 275 E----APADYLHQLCLAGLKER----PVAAGYSAADYRQRLDHELAVIHRMGFDDYFLIV 326 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + +A + I PGRGS AGS+ AYAL IT++DPL + LLFERFLNP+R MPD D+ Sbjct: 327 WDVMNFAHRTKITTDPGRGSAAGSLVAYALAITEVDPLEYQLLFERFLNPERAQMPDIDL 386 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV++YV +KYGHERVAQIITFG+L AK LRDV R + + L +P Sbjct: 387 DIPDNRREEVLKYVHDKYGHERVAQIITFGTLAAKQVLRDVSRVFNLTKFETASLLDTLP 446 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + QA+ + R + P + +L ++Q+LEGL RH STHAAGIV+ PL Sbjct: 447 KGGSFTLE-QALGESQRLKNLLNDQPKLRQLFRVAQQLEGLPRHYSTHAAGIVLSAAPLH 505 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 ++VP+ ++ L +TQF +E GL+K DFLGL+ L+++ ++ + QR + L Sbjct: 506 EIVPL-QEGSEGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNTIQMIRQRKPQFSLDQ 564 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 + D T L T G+FQ ES+G+R L + PD EDI+A+ +LYRPGP++NI Sbjct: 565 VSLADPATLRLFQRGQTDGVFQFESAGIRNVLTALHPDQFEDIVAVNALYRPGPMENITH 624 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK G+E I + P+L T G+++YQEQVMQ+A ++G++L EAD+LRRAM KK Sbjct: 625 FIARKRGQELIQLPDQSLAPILAPTYGILVYQEQVMQLASAMAGFTLGEADLLRRAMSKK 684 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K+ MD + +F++GA G +A +F+ + +FA+YGFN+SHA AY+ ++++ A++K Sbjct: 685 KKQTMDSMRAKFMAGAQAKGYQPALASQVFDYIDQFANYGFNRSHAVAYSKMAFEMAYLK 744 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYP EF A + E NV K+++ +A++ +++ P +N F V D +IY+ L Sbjct: 745 CHYPTEFYTALLNAE-SNVTKLRQHVTNAQKMGVKVNGPRINLSQAQFAVHDQQIYFGLT 803 Query: 841 AIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIKG+ A + E A+ PF + D +R+ K VL L++AGA D GY+R Sbjct: 804 AIKGLRRDFVADLLQEREANGPFKDIRDLINRLPDKWRKEEVLTPLIYAGACDGLGYNRA 863 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQ 956 ++++SL N+ + + A G D S + R E Sbjct: 864 EMVESLPNLLSGIE------------LLATLPGLSGDPSLQSSISHRQEYPLTTRLAKEN 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK--KTRKGSR 1014 +LG Y SGHP+ Y R++ + + +R N R+ +V + + K T+K R Sbjct: 912 ELLGVYLSGHPVSQY----RQLASRLRSGRITELRPNQ-RVTLIVFTNRVKVIHTKKDHR 966 Query: 1015 -IGWVTFSEPAKEYEANFFP 1033 + +V+ S+ + + FP Sbjct: 967 PMAFVSASDESGLVDVTVFP 986 >gi|189468209|ref|ZP_03016994.1| hypothetical protein BACINT_04605 [Bacteroides intestinalis DSM 17393] gi|189436473|gb|EDV05458.1| hypothetical protein BACINT_04605 [Bacteroides intestinalis DSM 17393] Length = 1264 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 371/1141 (32%), Positives = 598/1141 (52%), Gaps = 126/1141 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85 K AGI+ PIIGC++ + + M Sbjct: 64 GEIKDLKKRMAGIESGEIACDDKEAELADCRAKIAEAENKLFKPIIGCEMYVARR---TM 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVSR + + R + L++ EGLI Sbjct: 121 DKKEGKPDQSGWHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 178 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195 + + G + + + + AE+ + +K LFG+ Y+ LQRHR ++ Y Sbjct: 179 VCSACIGGEVPKKIINDQLEDAEEAIRWYKNLFGEDYYLELQRHRATIPRANHEAYPLQQ 238 Query: 196 -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++++ A + + L+ +N+ F++EE EAHD L+ ++ + +R T ++ Sbjct: 239 KANAKLIEFAKKYNIKLICSNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMLYTKQEWM 298 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM +F+D+PEAL NT+EI + + HAPI+P ++ EK Sbjct: 299 KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358 Query: 299 ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAIAKGYH----------- 333 + D + EE+ + + K + G E ++L +AK Sbjct: 359 DLFDEFTQDENGNVVLSEEDAKAKIKRLGGYEKLYRIKLEADYLAKLTFDGAKIFYGDPL 418 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 +++ +RL FEL+++ M F GYFLIV DFI + + +GPGRGS AGS AY L IT Sbjct: 419 SEEVMERLKFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQIT 478 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 479 KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTQKYGQEKVAHIITYGTMA 538 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--DPSVDR 510 K A++DV R ++P S+ DRL KL+P+ P ++L+ D +A A DP V Sbjct: 539 TKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIDYVPELQAAEASPDPLVRD 598 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566 L+ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 599 TLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 658 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GLIK DFLGLKTL++++++++ + RG+ +++ +P DD TY L + T+G FQ ES Sbjct: 659 GLIKMDFLGLKTLSIIKEAVENVRLHRGLALNIDKVPIDDPATYKLYSDGRTIGTFQFES 718 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 +GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK+T Sbjct: 719 AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 778 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG + Sbjct: 779 YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 838 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 839 LEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 898 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFD 863 + + I+++ P VN + F V + I + L A+KGVG +IME + F Sbjct: 899 MDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVLNIMEEREKNGSFK 958 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS--------LDNIQKYAQWV 915 + DF RV+ N++ LE L AG D F R + + L+ + +Y Sbjct: 959 GIFDFVQRVNLTACNKKNLECLALAGGFDEFPELRREQYFAVNSKNEVFLETLVRYGNRY 1018 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKP 973 + ++ ++F + D T E E S R E+ ++G Y S HPLD Y Sbjct: 1019 QADQAAAANSLFGGD--NVVDIATPEIPEAERWSDLDRLNKERDLVGIYLSAHPLDEYSV 1076 Query: 974 ILRKM-GIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +L+ + + E E + G I + +V S ++ ++ G+ G + + E F Sbjct: 1077 VLQHVCNTRMAELEDKTALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAELPF 1136 Query: 1032 F 1032 F Sbjct: 1137 F 1137 >gi|327402957|ref|YP_004343795.1| DNA polymerase III subunit alpha [Fluviicola taffensis DSM 16823] gi|327318465|gb|AEA42957.1| DNA polymerase III, alpha subunit [Fluviicola taffensis DSM 16823] Length = 1463 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 365/1095 (33%), Positives = 578/1095 (52%), Gaps = 95/1095 (8%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K FVHL H+ +++L+ +++ ++ + PA+A+TD N+ +A F + AG Sbjct: 254 KDVPFVHLHNHTQFTILQSTMNVKGLVKQAVKHNMPAVALTDIGNMMAAFHFEK--AIAG 311 Query: 67 IQ-----------------------PIIGCQ-------LDIDMQDNLKMTNQGKTPFPTV 96 I PIIGC+ LD ++DN + Sbjct: 312 INSEIEAERKEAEENGQTISKKPLLPIIGCEMYVCRDRLDKSVKDNGSL----------- 360 Query: 97 PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV-RICLSWLQEIGTEGLIMLTGGSSGPI 155 +V + +GY LI+L S + +G V RI S +++ E LI+LTGG +G I Sbjct: 361 --VVFIAKNKKGYHNLIKLASISHT--EGMYYVPRIDKSAVEQY-HEDLIVLTGGLNGEI 415 Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVAT 214 + AE+ L+ +K LFG+ LYV + RH D R + +++LA HE+ LVAT Sbjct: 416 PSLLLNVGEKQAEEALVWWKNLFGEDLYVEIMRHGQEDENRVNASLIKLAQKHEVKLVAT 475 Query: 215 NNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPR------VTPDHYLKNRSEMVSIFSDL 267 NN+ + S ED HD+L+ V V + K + R ++Y K+ EM +F DL Sbjct: 476 NNTFYGSREDANTHDILLCVRDGEQVTTPKGKGRNFRFGLENEEYYFKSADEMKELFLDL 535 Query: 268 PEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQG 326 PEA+E+ EI + +LP F I E D Q + R + A L +G Sbjct: 536 PEAIESISEILGKIEHYPLAREVLLPAFDIPDEFKDPQDAIDGGKRGEN-AFLRHLTYEG 594 Query: 327 AIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 A AK Y + R RLDFEL + + + GYFLIV DF Q A+ + VGPGRGS AGS Sbjct: 595 A-AKRYPEITDEIRDRLDFELATVEKTGYPGYFLIVQDFCQAARDMGVAVGPGRGSAAGS 653 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 AY IT++DP+ + LLFERFLNPDR+SMPD DIDF + R VI +V KYG +VA Sbjct: 654 AVAYCTGITNVDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVIDWVIEKYGSNQVA 713 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--------HPVSLQAIA--- 493 QIIT+G++ AK+++RD GR L +P + L KLIP++ P + +A Sbjct: 714 QIITYGTMAAKSSIRDAGRVLDLPLMDTNLLAKLIPDNFTLDAIFNWEEPKLAEKLANSP 773 Query: 494 -DDSRFREARLADPSVD---RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 D + +E R D ++L +Q++EG R+ HA G++I ++ VP+ Sbjct: 774 QDLANVQELRAVSKGTDMRAQVLRQAQRIEGSVRNTGIHACGVIITPDDITNFVPVSLAK 833 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608 + + TQF+ E+AGL+K DFLGLKTLTL++ ++ + +R + +D P DD +T Sbjct: 834 DTGMWCTQFDNSVAEEAGLLKMDFLGLKTLTLIKDAVKNVKKRHDIDLDPDTFPIDDEKT 893 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y L T+GIFQ ES GM++ + ++P D+IA+ +LYRPGP++ I + RKNG+ Sbjct: 894 YELFQRGETVGIFQYESPGMQKYMRELRPSVFADLIAMNALYRPGPLEYIPDFIKRKNGE 953 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 ++I + LKET G+ +YQEQVM ++Q L+G+S +ADVLR+AMGKK + +DK Sbjct: 954 QEIKYDLDACEEFLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQRYILDKM 1013 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 K +F+ + G + I++ FA Y FNKSH+ YA I+YQTA++K +YP EF+ Sbjct: 1014 KPQFVEQGQERGHDPVVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFM 1073 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGT 847 A+ ++ ++++ ++ F ++ R+ I+++ P VN +F V + I + L IKG+G+ Sbjct: 1074 ASVLSNNLNDIAQVSFFMEECRRMGIEVLGPDVNESAYEFTVNQHGAIRFGLGGIKGLGS 1133 Query: 848 TTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL--- 902 +I+E ++ F S+ + R++ + +N++ +ES+ +AG D F G R Q Sbjct: 1134 GPVENIIENRQEEGSFQSIFEMTKRLNLRIVNKKAMESMAYAGCFDSFKGAHRAQYFALD 1193 Query: 903 ----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 ++N KY ++ N + ++F + T+ N + E+ V Sbjct: 1194 AGGKTFIENALKYGNSLQDNENSAQVSMFGESADVKMPEPTIPNSEEWNLLYKLNREKEV 1253 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRI 1015 +G + SGHPLD ++ + G E ++ ++ G + + A++ Q T+ G Sbjct: 1254 VGIFISGHPLDDFRVEIEAF-CNGNVELLSNVKNHLGRDFTIPAIITDAQHLTTKTGKPF 1312 Query: 1016 GWV---TFSEPAKEY 1027 G + +S K+Y Sbjct: 1313 GLILIEDYSNTHKQY 1327 >gi|305665420|ref|YP_003861707.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170] gi|88710175|gb|EAR02407.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170] Length = 1478 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 362/1099 (32%), Positives = 562/1099 (51%), Gaps = 113/1099 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58 F HL H+ +S+L+ +S+ +++ + PA+A+TD N+ A F Sbjct: 261 FAHLHNHTQFSILQSTISVADLVQATVKNNMPAVAMTDHANMMGAFHFVNGVINHNKGVI 320 Query: 59 -----SQKACAAG---------------------IQPIIGCQLDI--DMQDNLKMTNQGK 90 QK A I PI+GC+ + D D + N + Sbjct: 321 SRNEEKQKRYEATQNGTLEEGQEPLEELPTLEKEITPIVGCEFQVCEDHTDKTQKDNGYQ 380 Query: 91 TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG 150 IV+L GY L ++ S ++ GK V + E E +I+LTG Sbjct: 381 --------IVMLAKNKNGYHNLAKMSSIAFV--DGKYYVPRIDKRIIEQYKEDVIVLTGN 430 Query: 151 SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHEL 209 G + + AE L+ +K+ FGD LY+ L RH D R +QV +Q A + + Sbjct: 431 LYGEVPSKVLNVGEKQAEDALIWWKETFGDDLYIELMRHNQEDETRVNQVLIQFAKKYNI 490 Query: 210 PLVATNNSLFLSEEDYEAHDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVS 262 L+A+NN+ + +E+ AHD+L+ V +T + + R ++Y K+ EM Sbjct: 491 KLIASNNTYYTEKENANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSEEMKE 550 Query: 263 IFSDLPEALENTVEIARRCSFILQVHAPILP--------RFIEKECDDIQKEEENELRNK 314 +F D+PEA+ N E+ + +LP +F E D ++ E LR+ Sbjct: 551 LFKDIPEAITNIQEVIDKVETYTLARDVLLPAFDIPKEFQFEEDRADGGKRGENKYLRHI 610 Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374 G + R + + +RLDFEL VI + GYFLIV DFI+ A+ N+ V Sbjct: 611 TYEGAKKRYEE-------ITPEIDERLDFELKVIENTGYPGYFLIVEDFIRAARDMNVSV 663 Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434 GPGRGS AGS AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV Sbjct: 664 GPGRGSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRISMPDIDIDFDDEGRGRVMDYV 723 Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI-- 492 +KYG +VAQIIT+G++ AK+++RD RAL +P DR+ KLIPN L+ I Sbjct: 724 IDKYGSNQVAQIITYGTMAAKSSIRDTARALDLPLGDADRMAKLIPN----MSKLKKIIG 779 Query: 493 ADD----SRFREARLADPSVDRLLEISQK-------------LEGLYRHASTHAAGIVIG 535 DD S+F L V+ LL I++ LEG R+ HA G++I Sbjct: 780 VDDAVLKSKFNSEELL--KVNELLNIAEGEGLESETLNQAYVLEGSVRNTGIHACGVIIT 837 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594 +++ VP+ S++ TQF+ +E AGL+K DFLGLKTLTL++ ++ + A+ G+ Sbjct: 838 PDDITKFVPVALAKDSEMYCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHGI 897 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++D P DD +TY L T+G+FQ ES GM++ + ++P D+IA+ +LYRPGP Sbjct: 898 ELDPENFPLDDEKTYELFQRGETVGVFQYESPGMQKHMRSLKPTVFADLIAMNALYRPGP 957 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 ++ I + RK+G E+IV + L ET G+ +YQEQVM ++Q L+ ++ EADVLR Sbjct: 958 MEYIPSFIARKHGTEEIVYDLDACEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLR 1017 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK K +DK K +FI AS G + I++ FA Y FNKSH+ YA I+Y Sbjct: 1018 KAMGKKQKHVLDKMKPKFIEKASAKGHAVDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAY 1077 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QTA+ K HYP E++AA ++ M++++++ F ++ ++ ++++ P VN F V +N Sbjct: 1078 QTAYCKAHYPAEYMAAVLSNNMNDIKQVTFFMEECKRMGLEVLGPDVNESYYKFAVNQNN 1137 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 + + + AIKGVG I+E ++ P+ S+ D R+D + N++ ESL AG D Sbjct: 1138 AVRFGMGAIKGVGRGAVETIVENRKEEGPYKSVFDMAKRIDLRASNKKAFESLAVAGGFD 1197 Query: 893 CFGYS-RMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 FG + R Q + L+ + K ++N+ + ++F + + Sbjct: 1198 SFGATHRAQYFHTEGDGVTFLEKVIKSGSKYQENKNSSQMDMFGGMSEAQIPEPVVPPCE 1257 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVV 1002 + + E+ V+G Y SGHPLD +K + G + I A ++ Sbjct: 1258 EWGTMEKLRREKEVVGIYISGHPLDDFKSEINAFTNGTISCFTDLPKYVNREISFAGVIT 1317 Query: 1003 SKQQKKTRKGSRIGWVTFS 1021 Q + + G GW F+ Sbjct: 1318 DVQHRIAKNGK--GWALFT 1334 >gi|23336668|ref|ZP_00121872.1| COG0587: DNA polymerase III, alpha subunit [Bifidobacterium longum DJO10A] Length = 1189 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 366/1073 (34%), Positives = 569/1073 (53%), Gaps = 68/1073 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++P Sbjct: 11 NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 70 Query: 70 IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + QD ++ Q + I L AE + L+ L+ + Sbjct: 71 IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 130 Query: 122 LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + +R + + T +G+I +G SG I A + F+ +FG Sbjct: 131 ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 190 Query: 180 -DRLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 D ++ L H E+QV + +A + PL+ATN+S ++ ED +A D ++ + Sbjct: 191 KDNFFIELMDH---GLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCI 247 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--API 291 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H Sbjct: 248 NSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAF 307 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P+F E D E + K GLE R G D ++ D+E VI +M Sbjct: 308 MPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQM 357 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 +F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+ Sbjct: 358 QFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPE 417 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+S+PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S Sbjct: 418 RVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 477 Query: 472 VDRLCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519 +++ K +P PA +SL I D + FRE +DP R+ E ++ +E Sbjct: 478 GEKITKALP--PAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIE 535 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKT 578 GL R HA ++G P++ P+ R+D + T F E GL+K DFLGL Sbjct: 536 GLIRQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSN 593 Query: 579 LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ +L + G +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++P Sbjct: 594 LTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKP 653 Query: 638 DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691 D DI AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIY Sbjct: 654 DNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIY 713 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + +++ Sbjct: 714 QEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWD 773 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ Sbjct: 774 ILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARR 833 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDF 868 IQ++ P VN ++ + + + L AI+ VG I+ A + P F + DF Sbjct: 834 MGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDF 892 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 RV LNRR++ESL+ AGA D +R LL + +++ + ++F+ Sbjct: 893 IRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFS 952 Query: 929 HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGI 980 + ++ +T+ + + E+ +LG Y S HPL + I LR+M I Sbjct: 953 DAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSI 1012 Query: 981 KGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1013 AHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065 >gi|224538019|ref|ZP_03678558.1| hypothetical protein BACCELL_02908 [Bacteroides cellulosilyticus DSM 14838] gi|224520366|gb|EEF89471.1| hypothetical protein BACCELL_02908 [Bacteroides cellulosilyticus DSM 14838] Length = 1264 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 373/1141 (32%), Positives = 596/1141 (52%), Gaps = 126/1141 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGPK 63 Query: 61 ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85 K AGI+ PIIGC++ + + M Sbjct: 64 GEIKDLKKRIAGIESGEIACEDKDAELADCRAKLAEAENKLFKPIIGCEMYVARR---TM 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVSR + + R + L++ EGLI Sbjct: 121 DKKEGKPDQSGWHLIVLAKNEKGYHNLIKLVSRAWT-EGYYMRPRTDRNELEKY-HEGLI 178 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195 + + G + + + + AE+ + +K LFG+ Y+ LQRH+ ++ Y Sbjct: 179 VCSACIGGEVPKKILNDQLEDAEEAVRWYKNLFGEDYYLELQRHKATVPRANHEAYPLQQ 238 Query: 196 -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++++ A + + L+ +N+ F++EE EAHD L+ ++ + R T ++ Sbjct: 239 RANAKLIEFAKKYNIKLICSNDVHFVNEEHAEAHDRLICLSTGKDLDDPKRMLYTKQEWM 298 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM +F+D+PEAL NT+EI + + HAPI+P ++ EK Sbjct: 299 KTKAEMNELFADIPEALSNTLEILNKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358 Query: 299 ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAIAKGYH----------- 333 + D + EE + + K + G E ++L +AK Sbjct: 359 DLFDEFTQDENGNVVLSEEAAKAKIKRLGGYEKLYRIKLEADYLAKLTFDGAKIFYGDPL 418 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 +++ +RL FEL ++ M F GYFLIV DFI + + VGPGRGS AGS AY L IT Sbjct: 419 SEEVMERLKFELYIMKTMGFPGYFLIVQDFIAAGRNMGVSVGPGRGSAAGSAVAYCLQIT 478 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 479 KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTQKYGQEKVAHIITYGTMA 538 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--DPSVDR 510 K A++DV R ++P S+ DRL KL+P+ P ++L+ D +A A DP V Sbjct: 539 TKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIDYVPELQAAEASPDPLVRD 598 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566 L+ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 599 TLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 658 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GLIK DFLGLKTL++++++++ + R +++++ +P DD TY L + T+G FQ ES Sbjct: 659 GLIKMDFLGLKTLSIIKEAVENIRLHRKLELNIDKVPIDDPATYKLYSDGRTIGTFQFES 718 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 +GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK+T Sbjct: 719 AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 778 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG + Sbjct: 779 YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 838 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 839 LEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 898 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFD 863 + + I+++ P VN + F V + I + L A+KGVG +IME + PF Sbjct: 899 MDECKAMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVLNIMEEREKNGPFK 958 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWV 915 + DF RV+ N++ LE L AG D F R Q ++ + +Y Sbjct: 959 GIFDFVQRVNLTACNKKNLECLALAGGFDEFPELKREQYFAVNSKNEVFMETLVRYGNRY 1018 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKP 973 + ++ ++F E D T E E S R E+ ++G Y S HPLD Y Sbjct: 1019 QADQAAAANSLFGGE--NVVDIATPEIPEAERWSDLDRLNRERDLVGIYLSAHPLDEYSV 1076 Query: 974 ILRKM-GIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +L+ + + E E A + G I + +V S ++ ++ G+ G + + E F Sbjct: 1077 VLQHVCNTRMAELEDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAELPF 1136 Query: 1032 F 1032 F Sbjct: 1137 F 1137 >gi|189439008|ref|YP_001954089.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A] gi|189427443|gb|ACD97591.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A] Length = 1185 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 366/1073 (34%), Positives = 569/1073 (53%), Gaps = 68/1073 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++P Sbjct: 7 NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66 Query: 70 IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + QD ++ Q + I L AE + L+ L+ + Sbjct: 67 IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126 Query: 122 LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + +R + + T +G+I +G SG I A + F+ +FG Sbjct: 127 ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 D ++ L H E+QV + +A + PL+ATN+S ++ ED +A D ++ + Sbjct: 187 KDNFFIELMDH---GLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCI 243 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--API 291 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H Sbjct: 244 NSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAF 303 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P+F E D E + K GLE R G D ++ D+E VI +M Sbjct: 304 MPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQM 353 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 +F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+ Sbjct: 354 QFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPE 413 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+S+PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S Sbjct: 414 RVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 473 Query: 472 VDRLCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519 +++ K +P PA +SL I D + FRE +DP R+ E ++ +E Sbjct: 474 GEKITKALP--PAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIE 531 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKT 578 GL R HA ++G P++ P+ R+D + T F E GL+K DFLGL Sbjct: 532 GLIRQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSN 589 Query: 579 LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ +L + G +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++P Sbjct: 590 LTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKP 649 Query: 638 DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691 D DI AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIY Sbjct: 650 DNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIY 709 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + +++ Sbjct: 710 QEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWD 769 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ Sbjct: 770 ILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARR 829 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDF 868 IQ++ P VN ++ + + + L AI+ VG I+ A + P F + DF Sbjct: 830 MGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDF 888 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 RV LNRR++ESL+ AGA D +R LL + +++ + ++F+ Sbjct: 889 IRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFS 948 Query: 929 HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGI 980 + ++ +T+ + + E+ +LG Y S HPL + I LR+M I Sbjct: 949 DAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSI 1008 Query: 981 KGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1009 AHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061 >gi|159900372|ref|YP_001546619.1| DNA polymerase III subunit alpha [Herpetosiphon aurantiacus ATCC 23779] gi|159893411|gb|ABX06491.1| DNA polymerase III, alpha subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 1296 Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust. Identities = 359/1045 (34%), Positives = 562/1045 (53%), Gaps = 68/1045 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G + I ++ A Q +IAITD ++ A+EF A A ++PI Sbjct: 4 FVHLHVHSEYSLLDGYATTKAIAERAAELQMDSIAITDHGVMYGAMEFYANAKKANVKPI 63 Query: 71 IGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK--- 126 IG + I N M GK + ++L+ GY+ L++L SR +L GK Sbjct: 64 IGMEAYIAPNSNKDPMVKGGKNYY----HLLLIAQNEVGYRNLVKLTSRSHLDGMGKGIF 119 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 RI L++ EGLI+ + +G + + Q A + + F+ LFG + ++ Sbjct: 120 ARPRIDRQLLEQY-HEGLIVTSSCIAGEVIQQVQAKQRQKAIETVAWFRDLFGPENYFIE 178 Query: 186 LQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242 LQ H E ++V++A +PLVATN++ F+ ED + H +MA+ + + + Sbjct: 179 LQLHNNTPELVEINEELVRIANEMHVPLVATNDTHFVRREDLDTHSRVMAMGFNLTLQEL 238 Query: 243 -KDRPRVTPDHYLKNRSEM---VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ +++ + EM I+ P +ENT IA C+ L LP F Sbjct: 239 CSKNYQMDETYHIMSGDEMWDRYKIYGTAP--MENTRRIADMCNLKLDFGRVELPEFDIP 296 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVIARMKFSGY 356 E D A + L + +G I + G ++Y QRL +EL+VI + F Y Sbjct: 297 EGHD------------AASYLRLICEEGLIKRCNGNPTEEYVQRLSYELDVINQTGFPDY 344 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 LIV D++++A+ N IP P RGS S+ Y L ITD+DP++ LLFERFL+P+R+ MP Sbjct: 345 MLIVWDYVKFARSNGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSPERLEMP 403 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DF RR E++ Y+ KYG E VAQIIT+G+L AKAALRD+GR L +P S+VDR+ Sbjct: 404 DIDTDFADARRGEILDYIATKYGRENVAQIITYGTLGAKAALRDMGRVLDIPLSEVDRVA 463 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP P +++ ++ DP + L++ +QK+EG + THA G+V+ Sbjct: 464 KLIPTLPVGMTIAKSLDKVPELKQIYDTDPKLRELMDWAQKVEGRMKSVGTHACGVVVSR 523 Query: 537 RPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 PL +VP+ R + + V F + K GL+K D LGL L++ ++L + Q G Sbjct: 524 HPLENMVPLQRTTKDEHGVMAAFEGPTLAKMGLLKMDILGLTNLSVAAEALQLIEQTTGK 583 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + LS IP DD +T+ L T+ +FQLES+GM + L ++P ++D+ +V+LYRPGP Sbjct: 584 TMWLSDIPLDDKKTFEALGRGETVDVFQLESAGMTRYLVQLKPTRVDDLYGMVALYRPGP 643 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 ++ I VY + KN I IHP++ P+L++T GVI+YQEQ+MQ+ Q ++ Y+L EA ++ Sbjct: 644 LEQIPVYIHNKNNPHAIKYIHPILKPILEDTYGVIVYQEQIMQLLQAVAEYTLGEAYIVI 703 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +A+ KK KE M + RF G + G+++ A ++EL+ FA Y FN+ H+ Y ++SY Sbjct: 704 KAISKKNKELMAENSVRFKEGCLRKGLTQAQADELWELILPFAGYSFNRPHSTLYGLLSY 763 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832 QTAW+K +YP E++ A+++ ++++ K +A + + + PP VN F + D Sbjct: 764 QTAWLKNNYPTEYMTATLSAASGEIDEVAKSVAEASRLGVAVSPPDVNGSKEGFTIVDIA 823 Query: 833 ---------NR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRV 881 NR I + L+AI+ VG + I++ + PF S+EDFC+RVD LN+RV Sbjct: 824 GELPEGIKYNRGIRFGLSAIRNVGVGPIQAILKVRDESGPFSSIEDFCARVDRGVLNKRV 883 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKI 938 +ESLV GA+D +R Q L LD +K R ++F G T + I Sbjct: 884 MESLVKCGAMDSLPGTRHQKLAILDRAISAGHETQKAREAGQNSLFDMLGGGEQTSTPTI 943 Query: 939 TLEKFSVENSSVRFEN-----EQRVLGFYFSGHPL------DVYKPILRKMGIKGYEESV 987 + F + + + E+ +LG Y S HP+ + P +G+ + Sbjct: 944 SPIPFPPAATGLEMQRELLNWEKELLGMYISEHPMAQALANAPHDPGRISLGMIDKKHI- 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKG 1012 G IRL M+ + ++ +T+KG Sbjct: 1003 ----GTTIRLIGMINNTKRIQTKKG 1023 >gi|322691499|ref|YP_004221069.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320456355|dbj|BAJ66977.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp. longum JCM 1217] Length = 1185 Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust. Identities = 363/1070 (33%), Positives = 567/1070 (52%), Gaps = 62/1070 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++P Sbjct: 7 NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66 Query: 70 IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + QD ++ Q + I L AE + L+ L+ + Sbjct: 67 IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126 Query: 122 LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + +R + + T +G+I +G SG I + A + F+ +FG Sbjct: 127 ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFEEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A PL+ATN+S ++ ED +A D ++ + Sbjct: 187 KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H +P+ Sbjct: 247 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 306 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F E D E + K GLE R G D ++ D+E VI +M+F Sbjct: 307 FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 356 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S Sbjct: 357 GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 416 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 +PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S ++ Sbjct: 417 LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 476 Query: 475 LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522 + K +P PA +SL I D + FRE +DP R+ E ++ +EGL Sbjct: 477 ITKALP--PAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLI 534 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA ++G P++ P+ R+D + T F E GL+K DFLGL LT+ Sbjct: 535 RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 592 Query: 582 LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L + G +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD Sbjct: 593 IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 652 Query: 641 EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694 DI AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIYQEQ Sbjct: 653 NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L Sbjct: 713 VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ I Sbjct: 773 PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 832 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871 Q++ P VN ++ + + + L AI+ VG I+ A + P F + DF R Sbjct: 833 QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 891 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V LNRR++ESL+ AGA D +R LL + +++ + ++F+ + Sbjct: 892 VPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 951 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983 ++ +T+ + + E+ +LG Y S HPL + I LR+M I Sbjct: 952 DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1011 Query: 984 EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1012 VDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061 >gi|311895500|dbj|BAJ27908.1| putative DNA polymerase III subunit alpha [Kitasatospora setae KM-6054] Length = 1175 Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust. Identities = 351/1062 (33%), Positives = 564/1062 (53%), Gaps = 52/1062 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + HL VH+ YS+L+GA L + ++ Q +A+TD N++ A EF ++A AAGI P+ Sbjct: 6 YAHLHVHTEYSMLDGAARLKQLFAEVGRLGQTHVAMTDHGNMYGAAEFHKQAVAAGITPV 65 Query: 71 IGCQLDI--DMQDNLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 IG + + + + N K G+ + + EG L +L SR Y Sbjct: 66 IGIEAYVAPESRSNTKRILWGQPHQKRDDVSASGAYTHKTIWARNKEGLHNLFKLTSRSY 125 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 + R+ + E GL+ TG SG + A + ++++FG Sbjct: 126 AEGWLVKWPRMDKEIIAEHAA-GLMATTGCPSGEVQTRLRLGQFDEALRSAGEYQEIFGR 184 Query: 180 DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 + ++ L H G + R R+ +V++ +P V TN+S + +E D AHD+L+ V Sbjct: 185 ENYFLELMDH-GLEIEGRVRDG-LVEIGRRLNIPPVVTNDSHYTTEADAGAHDLLLCVQT 242 Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENT-VEIARRCSFILQVH-API 291 +S DR R +Y+K+ +EM + S E N+ + +A R + Sbjct: 243 GKNLSDPDRFRFDGTGYYVKSAAEMYGLDSSDIWQEGCRNSQLLVAERVDTTGMFEFKNL 302 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +PRF E E R K G++ R G + +++R+ ++E++ I +M Sbjct: 303 MPRFPIPEG---FGSEAEFFRAKVWEGMDRRFPGG------YDEEHRELAEYEMDTIVQM 353 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFL+VADFI WAK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 354 GFPAYFLVVADFIMWAKSQGIAVGPGRGSAAGSLVAYAMGITDLDPIPHGLIFERFLNPE 413 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR +VIRYV K+G ++VA I+T+G+++AKAA++D R L PY+ Sbjct: 414 RVSMPDVDIDFDERRRADVIRYVTEKWGSDKVAMIVTYGTIKAKAAIKDSSRVLGYPYAM 473 Query: 472 VDRLCKLIPNDP-AHPVSLQAIADDSRFREARLA--------DPSVDRLLEISQKLEGLY 522 DR+ K +P D + L I D + R DP V ++++ ++ +EGL Sbjct: 474 GDRITKAMPPDVMGKGIPLSGITDSAHPRYGEAGEIRALYENDPDVKKVIDTARGIEGLI 533 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ PL+ +P++ + +TQF+ E GL+K DFLGL+ LT++ Sbjct: 534 RQPGVHAAGVIMSAEPLTDHIPVWTRHTDGVTITQFDYPTCEGLGLLKMDFLGLRNLTIM 593 Query: 583 QKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + + +GV+++L +P DD Y LL TLG+FQL+ MR L M+PD E Sbjct: 594 DDAVKAIERNKGVRIELLQLPLDDKPAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFE 653 Query: 642 DIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695 DI A+++LYRPGP +++ Y RKNG+++I IHP L +P+ L+ T G+I+YQEQV Sbjct: 654 DISAVLALYRPGPMGVNSHTNYALRKNGQQEITPIHPELAEPLREVLEPTYGLIVYQEQV 713 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+L+GYSL +AD+LRRAMGKK KE ++ + F G + G S ++++L Sbjct: 714 QKAAQILAGYSLGQADLLRRAMGKKKKEILEAEFVPFQRGCRERGYSDAAIQAVWDVLVP 773 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 F+ Y FNK+H A Y ++SY TA++K +YP E+++A +T D+ +K + + R+ IQ Sbjct: 774 FSGYAFNKAHTAGYGLVSYWTAYLKANYPAEYMSALLTSVKDDKDKSAVYLNECRKMGIQ 833 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873 ++PP VN DF G + + L AI+ VG ++ A + S DF +V+ Sbjct: 834 VLPPDVNESDADFTPHGSETVRFGLTAIRNVGGPVVESMIRTRKAKGKYTSFPDFLEKVE 893 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEK 931 S N+R +ESL+ AGA D G++R L + + +++ ++F ++ Sbjct: 894 SVVCNKRTVESLIKAGAFDSLGHTRKGLSAQFEPMIDNVVGIKRKEAEGQFDLFETVSDE 953 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 +F + + E V +E+ +LG Y S HPL + +L + Sbjct: 954 PSFGLDVVFAEDEWEK-PVLLTHEREMLGLYVSSHPLHGIEHVLADKADCAVADLAERPD 1012 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A + FFP Sbjct: 1013 GVTVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIDCMFFP 1054 >gi|239620845|ref|ZP_04663876.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239516421|gb|EEQ56288.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 1189 Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust. Identities = 363/1070 (33%), Positives = 566/1070 (52%), Gaps = 62/1070 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++P Sbjct: 11 NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 70 Query: 70 IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + QD ++ Q + I L AE + L+ L+ + Sbjct: 71 IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 130 Query: 122 LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + +R + + T +G+I +G SG I A + F+ +FG Sbjct: 131 ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 190 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A PL+ATN+S ++ ED +A D ++ + Sbjct: 191 KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 250 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H +P+ Sbjct: 251 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 310 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F E D E + K GLE R G D ++ D+E VI +M+F Sbjct: 311 FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 360 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S Sbjct: 361 GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 420 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 +PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S ++ Sbjct: 421 LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 480 Query: 475 LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522 + K +P PA +SL I D + FRE +DP R+ E ++ +EGL Sbjct: 481 ITKALP--PAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLI 538 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA ++G P++ P+ R+D + T F E GL+K DFLGL LT+ Sbjct: 539 RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 596 Query: 582 LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L + G +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD Sbjct: 597 IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 656 Query: 641 EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694 DI AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIYQEQ Sbjct: 657 NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 716 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L Sbjct: 717 VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 776 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ I Sbjct: 777 PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 836 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871 Q++ P VN ++ + + + L AI+ VG I+ A + P F + DF R Sbjct: 837 QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 895 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V LNRR++ESL+ AGA D +R LL + +++ + ++F+ + Sbjct: 896 VPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 955 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983 ++ +T+ + + E+ +LG Y S HPL + I LR+M I Sbjct: 956 DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1015 Query: 984 EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1016 VDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065 >gi|317481576|ref|ZP_07940612.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] gi|316916936|gb|EFV38322.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] Length = 1185 Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust. Identities = 365/1073 (34%), Positives = 569/1073 (53%), Gaps = 68/1073 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++P Sbjct: 7 NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66 Query: 70 IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + QD ++ Q + I L AE + L+ L+ + Sbjct: 67 IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126 Query: 122 LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + +R + + T +G+I +G SG I + A + F+ +FG Sbjct: 127 ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFEEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 D ++ L H E+QV + +A + PL+ATN+S ++ ED +A D ++ + Sbjct: 187 KDNFFIELMDH---GLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCI 243 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--API 291 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H Sbjct: 244 NSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAF 303 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P+F E D E + K GLE R G D ++ D+E VI +M Sbjct: 304 MPKFPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQM 353 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 +F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+ Sbjct: 354 QFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPE 413 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+S+PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S Sbjct: 414 RVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 473 Query: 472 VDRLCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519 +++ K +P PA +SL I D + FRE +DP R+ E ++ +E Sbjct: 474 GEKITKALP--PAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIE 531 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKT 578 GL R HA ++G P++ P+ R+D + T F E GL+K DFLGL Sbjct: 532 GLIRQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSN 589 Query: 579 LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ +L + G +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++P Sbjct: 590 LTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKP 649 Query: 638 DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691 D DI AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIY Sbjct: 650 DNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIY 709 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + +++ Sbjct: 710 QEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWD 769 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ Sbjct: 770 ILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARR 829 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDF 868 IQ++ P VN ++ + + + L AI+ VG I+ A + P F + DF Sbjct: 830 MGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDF 888 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 RV LNRR++ESL+ AGA D +R L + +++ + ++F+ Sbjct: 889 IRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFS 948 Query: 929 HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGI 980 + ++ +T+ + + E+ +LG Y S HPL + I LR+M I Sbjct: 949 DAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSI 1008 Query: 981 KGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1009 AHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061 >gi|32472323|ref|NP_865317.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1] gi|32443559|emb|CAD73001.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1] Length = 1199 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 358/995 (35%), Positives = 546/995 (54%), Gaps = 40/995 (4%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 T+ E P FVHL HS YSLL+GA + ++ + A+A+TD NL ALEF +K Sbjct: 16 TEIPETKP-FVHLHCHSHYSLLDGAGDIGKLVKRAVDHGMNALALTDHGNLHGALEFYRK 74 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 A AGI PIIG + I + + + LL G++ LI+L S L Sbjct: 75 AKDAGINPIIGYEAYIAPGSRFDKGGASSSKAASY-HLTLLAQNRTGFKNLIKLASAASL 133 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-----SSQVAEKRLLTFKK 176 + RI L++ EG++ L+G S RA + A+K F K Sbjct: 134 -EGFYFKPRIDKEILEKY-NEGIVCLSGCVSSEFSRAILKGIQTKEHEEEAKKIAGWFHK 191 Query: 177 LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 +FGDR ++ + + R + V +A LPLVAT++ ++++ED EA D+++ + Sbjct: 192 VFGDRYFIEIMNNDVDIQRTQLEGAVDIANKMGLPLVATSDCHYVNQEDAEAQDIMLCIN 251 Query: 236 HSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 + R ++ D + L++ +M F L +A+ + EIA L+ + P Sbjct: 252 TGRFRTDNTRMKMENDQFFLRSPQQMYEKFPGLEDAVGRSQEIADTVDIQLEFNKYFFPS 311 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMK 352 F C D + + LR GL R I G + + RLD EL+VI ++ Sbjct: 312 F---PCPD-ELTPLDYLRKLCEQGLMERYEGDDERIIDGKLSDEVMARLDRELDVIEKLG 367 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + YFLIV DF+ A+ I RGSG G++ YAL ++ + PLR+ LLFERFL+ R Sbjct: 368 YPTYFLIVWDFVNHARDIGISA-TARGSGVGAIVCYALYMSHVCPLRYDLLFERFLDESR 426 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 PD DIDF ++RR EVI YV+ +YG E V QI TFG+L AKAA++D GRAL +P S+V Sbjct: 427 TEPPDIDIDFEKERRIEVIDYVKERYGSEMVCQIGTFGTLAAKAAIKDTGRALGIPLSRV 486 Query: 473 DRLCKLIPNDPAHPV--SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 +++ +L+P++ + SL+ AD + DP + LL+++ K+EGL R+ THAA Sbjct: 487 NQITELVPDELKITIAKSLEKSAD---LKMIYDGDPEIRELLDLAMKIEGLARNVGTHAA 543 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 +VI D+PL++ VP+ R +TQ+ M +E +GL+K DFLGL+ LT+L +++ + Sbjct: 544 AVVIADKPLTEYVPLGRVPGKQDVITQWAMVDVEASGLLKMDFLGLRNLTILSRTVKLVE 603 Query: 591 QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 Q G +D P DD +Y LL T G+FQLES G+R L+ M+PD DIIA +L Sbjct: 604 QTTGTTIDPLKFPLDDKPSYALLQRGETKGVFQLESGGIRDLLQRMKPDTFNDIIATAAL 663 Query: 650 YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 YRPGP++ +V Y N K+G+++ HP++ +L+ET +++YQEQVM+I L L Sbjct: 664 YRPGPLEGGMVDDYVNIKHGRQQPEYKHPVLKEILEETNSIMVYQEQVMRILNRLGDVPL 723 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 ++A +A+ KK + +D + FI+G+ KNG+++ A +I+ L+ KFA YGFNKSH+ Sbjct: 724 AKAYTCIKAISKKKQALIDANHDVFIAGSIKNGLAEKDAEDIWNLIVKFAGYGFNKSHST 783 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDN-----VEKIKKFCQDARQFNIQIMPPSVN 822 AYA+++YQTA++K HYPVEF+AA ++ ++ + + + +D + +I+++PP+VN Sbjct: 784 AYALVAYQTAYLKAHYPVEFMAALLSSDISGRNFKRKDALVEHMEDCDRMDIEVLPPNVN 843 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRV 881 DF V D +I ++L+AIK G +TA I E + PF + DFC RVD NR Sbjct: 844 QSDADFGVLDGKIPFALSAIKACGGSTAISIEEERKKNGPFKDIFDFCERVDPHDCNRSS 903 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGT 933 +E+L+ AGA DCFG R QL L+ + V+ ++ + F A G Sbjct: 904 IETLIKAGAFDCFGAKRSQLASVLERAMQAGAKVQADKKTGQASFFDAFDEEVDADSNGE 963 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 S + L + E+ VLGFY HPL Sbjct: 964 SSAAVPLPDIEEWPDREKLLAEKEVLGFYLDSHPL 998 >gi|254391618|ref|ZP_05006817.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC 27064] gi|294812110|ref|ZP_06770753.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC 27064] gi|197705304|gb|EDY51116.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC 27064] gi|294324709|gb|EFG06352.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC 27064] Length = 1179 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 365/1078 (33%), Positives = 568/1078 (52%), Gaps = 76/1078 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ IA+TD NL A +F +A AGI Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFSACKDMGMSHIAMTDHGNLHGAYDFFHQAKGAGIT 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY-QRLIELVSRMYLLDQGK- 126 PIIG + + + N+ K + VS + GY + I +R L + + Sbjct: 64 PIIGIEAYVAPESR---RNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFRL 120 Query: 127 QSVRICLSWLQEI----------GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S WLQ+ +EGLI TG SG + A K ++ Sbjct: 121 SSDAYAEGWLQKWPRMDKETIAQWSEGLIASTGCPSGELQTRLRLGQFDEALKAASEYQD 180 Query: 177 LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FG R ++ L H +R ++++ ++P + TN+S + + + AHD L+ + Sbjct: 181 IFGKGRYFLELMDHGIEIERRVRDGLLEIGKKLDIPPLVTNDSHYTFDHEAGAHDALLCI 240 Query: 235 AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP- 290 +S DR R +YLK+ +M +I S E NT+ +A + A Sbjct: 241 QTGKNLSDPDRFRFDGTGYYLKSTDQMYAIDSSDAWQEGCRNTLLVAEQIDTSGMFEAKN 300 Query: 291 ILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 ++P+F I ++ +E EVR G +D +++ ++E++VI Sbjct: 301 LMPKFEIPAGFTEVTWFQE-----------EVRTGMARRYPGGVPEDRQRQAEYEMDVIV 349 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F GYFL+VADFI WAKKN I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLN Sbjct: 350 SMGFPGYFLVVADFIMWAKKNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLN 409 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G+++AK A++D R L PY Sbjct: 410 PERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPY 469 Query: 470 SQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516 + DRL K +P DPAHP +A R +P V ++++ ++ Sbjct: 470 AMGDRLTKAMPADVLGKGIPLSGILDPAHPRYSEA----GEIRGMYENEPDVKKVIDTAR 525 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +EGL R HAAG+++ P++ P++ + +TQ++ E GL+K DFLGL Sbjct: 526 GVEGLVRQMGVHAAGVIMSSEPITDHAPVWVRHSDGVTITQWDYPSCESLGLLKMDFLGL 585 Query: 577 KTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT++ ++ + A +G+++++ IP DD TY LL TLG+FQ + MR L M Sbjct: 586 RNLTIMDDAVKMVKANKGIELEMLSIPLDDPTTYELLCRGDTLGVFQFDGGPMRSLLRLM 645 Query: 636 QPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVI 689 +PD EDI A+ +LYRPGP +++ Y RKN +++I IHP ++ LKE T G+I Sbjct: 646 KPDNFEDISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEEPLKEVLDVTYGLI 705 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQV + AQ+++GYSL EAD+LRR MGKK EE+ K F +GA KNG S + Sbjct: 706 VYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDEAVQAL 765 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 +++L FA Y FNK+H++AY +++Y TA++K ++P E++AA +T D+ +K + + Sbjct: 766 WDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNEC 825 Query: 810 RQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867 R+ I+++PP+VN +F GD+ I + L+A++ VGT I+ K + S D Sbjct: 826 RRMGIKVLPPNVNESQSNFAAQGDDVILFGLSAVRNVGTNVVESIIRCRKSKGKYSSFPD 885 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +V+ N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 886 FLDKVEVVVCNKRTVESLIKAGAFDELGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLF 945 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFE------NEQRVLGFYFSGHPLDVYKPILRKMGIK 981 +D+ VE S V +E E+ +LG Y S HPL + +L Sbjct: 946 GGMGDDSADEPGF-GLDVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGIEHVLSDKS-- 1002 Query: 982 GYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + S++ + G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1003 --DASISQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|198274347|ref|ZP_03206879.1| hypothetical protein BACPLE_00491 [Bacteroides plebeius DSM 17135] gi|198272837|gb|EDY97106.1| hypothetical protein BACPLE_00491 [Bacteroides plebeius DSM 17135] Length = 1265 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 372/1143 (32%), Positives = 602/1143 (52%), Gaps = 129/1143 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YS+L+G S+ ++DK A+ IA+TD ++F EF Sbjct: 4 FVHLHVHTQYSILDGQASIPRLVDKAMANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGTN 63 Query: 61 ---------------------------KACAAGIQ--------PIIGCQLDIDMQDNLKM 85 AC ++ PI GC++ + + ++ Sbjct: 64 GEIKDLKKKIAALESGKEESENPEAEIAACKEQLEAAKKKLFKPIFGCEMYVARR---RL 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGL 144 ++ P + +V+L +GY LI+LVS+ + +G R + L++ EGL Sbjct: 121 EDKEGKPDQSGYHLVVLAKNLKGYHNLIKLVSKAWT--KGFYMRPRTDRAELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRES 198 I+ + G + R + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 178 IVCSACLGGEVPRRITAGQFEEAEEAIRWYKNLFGDDYYLELQRHKATVARANHEVYPMQ 237 Query: 199 QVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 QVV + A + + LV TN+ F+ EE+ EAHD L+ ++ + +R T + Sbjct: 238 QVVNEKLIEYAKKYNIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +F+D+PEAL NTVEI + F HAPI+P +F E Sbjct: 298 MKTREEMNEVFADVPEALSNTVEICDKVEFYSIDHAPIMPTFAIPEDFGTEEEYRKKFTE 357 Query: 298 KECDD--IQKEEENELRNKAVAGLEV--------------------RLAQGAIAKGYH-- 333 K+ D + E N + ++A A ++ +LA + Y Sbjct: 358 KDLFDEFTRDENGNVVMDEAAAKAKIERLGGYEKLYRIKLEADYLAKLAYDGAKRRYGEN 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++R+ FEL+++ M F GYFLIV DFI A+ ++ VGPGRGS AGS AY L Sbjct: 418 LSEEVQERIKFELHIMKTMGFPGYFLIVQDFINAARHQLDVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA IIT+G+ Sbjct: 478 ITQIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRLCKLIP+ P ++L AIA +EA ++ +P + Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLCKLIPDKLPDKKLNLPNAIAYVPELQEAEVSPNPVL 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 ++ ++ LEG R+ HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + Q +G+ +++ +P DD TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAIENIRQSKGIVLNIDEVPIDDPATYRLYSEGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGKKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + N+ +I Sbjct: 838 KVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNISNITEIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIM-EASAD 859 K + + ++++ P VN + F V GD I + L AIKGVG + + I+ E + Sbjct: 898 KLMDECKSMGVKVLGPDVNESNLKFSVNYRGD--IRFGLGAIKGVGESAVQSILDERRKN 955 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL------QSLDNI-QKY 911 F ++ DF RV+ NR+ +E+L AG D F G R +S +I +Y Sbjct: 956 GEFKNIFDFVQRVNLSACNRKNIENLALAGGFDSFSGIKREDFFVKNAKDESFSDILVRY 1015 Query: 912 AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 + ++ ++F E + + R E+ ++G Y S HPLD + Sbjct: 1016 GNKYQLDKAAAANSLFGGEHEVEVATPEIVPAPSWSDLERLNKERDLVGIYLSAHPLDEF 1075 Query: 972 KPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 IL + E + ++ +++ L +V ++ T+ G G + + E Sbjct: 1076 AVILENVCNVHMAELTDLTPLQNHDLVLGGIVTGVREGYTKTGKPYGIAKVEDYSGTAEF 1135 Query: 1030 NFF 1032 FF Sbjct: 1136 AFF 1138 >gi|296454472|ref|YP_003661615.1| DNA polymerase III subunit alpha [Bifidobacterium longum subsp. longum JDM301] gi|296183903|gb|ADH00785.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp. longum JDM301] Length = 1185 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 362/1070 (33%), Positives = 565/1070 (52%), Gaps = 62/1070 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++P Sbjct: 7 NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66 Query: 70 IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + QD ++ Q + I L AE + L+ L+ + Sbjct: 67 IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126 Query: 122 LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + +R + + T +G+I +G SG I A + F+ +FG Sbjct: 127 ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A PL+ATN+S ++ ED +A D ++ + Sbjct: 187 KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H +P+ Sbjct: 247 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHEDGAFMPK 306 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F E D E + K GLE R G D ++ D+E VI +M+F Sbjct: 307 FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 356 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S Sbjct: 357 GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 416 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 +PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S ++ Sbjct: 417 LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 476 Query: 475 LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522 + K +P PA +SL I D + FRE +DP R+ E ++ +EGL Sbjct: 477 VTKALP--PAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLI 534 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA ++G P++ P+ R+D + T F E GL+K DFLGL LT+ Sbjct: 535 RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 592 Query: 582 LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L + G +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD Sbjct: 593 IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 652 Query: 641 EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694 DI AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIYQEQ Sbjct: 653 NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L Sbjct: 713 VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ I Sbjct: 773 PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 832 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871 Q++ P VN ++ + + + L AI+ VG I+ A + P F + DF R Sbjct: 833 QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 891 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V LNRR++ESL+ AGA D +R L + +++ + ++F+ + Sbjct: 892 VPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 951 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983 ++ +T+ + + E+ +LG Y S HPL + I LR+M I Sbjct: 952 DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1011 Query: 984 EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1012 VDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061 >gi|320011307|gb|ADW06157.1| DNA polymerase III, alpha subunit [Streptomyces flavogriseus ATCC 33331] Length = 1179 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 358/1076 (33%), Positives = 562/1076 (52%), Gaps = 72/1076 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFEACNDMGMSHIAMTDHGNLHGAYDFFHSAKKAGVT 63 Query: 69 PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118 PIIG + + + K Q P + + + + G L +L S Sbjct: 64 PIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFKLSSD 123 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 Y ++ R+ + + +EGLI TG SG + A + +K +F Sbjct: 124 AYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDYKDIF 182 Query: 179 GD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G+ R ++ L H +R ++++ ++P + TN+S + + AHD L+ + Sbjct: 183 GEGRYFLELMDHGIEIERRVRDGLLEIGRKLDIPPLVTNDSHYTYANEATAHDALLCIQT 242 Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA-PIL 292 +S DR R +YLK EM + S E NT+ +A++ ++ Sbjct: 243 GKNLSDPDRFRFDGTGYYLKTTDEMYGVDSSDAWQEGCANTLLVAQQIDTTGMFEKRDLM 302 Query: 293 PRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 P+F I + +I +E EVR G G +D +++ ++E+++I +M Sbjct: 303 PKFDIPEGFTEITWFQE-----------EVRAGMGRRYPGGVPEDRQKQAEYEMDIIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPITHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518 DRL K +P DP HP +A R +P V ++++ ++ + Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPKHPRYSEA----GEIRGMYENEPDVRKVIDTAKGV 527 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ Sbjct: 528 EGLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRN 587 Query: 579 LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ ++ + A +GV +++ +P DD +TY LL TLG+FQ + MR L MQP Sbjct: 588 LTIMDDAIKMVKANKGVDLEMLSLPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQP 647 Query: 638 DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691 D EDI A+ +LYRPGP +++ Y RKN +++I IHP ++ LKE T G+I+Y Sbjct: 648 DNFEDISAVSALYRPGPMGMNSHTNYAERKNARQEITPIHPELEEPLKEVLGLTYGLIVY 707 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQV + AQ+++GYSL EAD+LRR MGKK +E+ K F +GA KNG S +++ Sbjct: 708 QEQVQKAAQIVAGYSLGEADILRRVMGKKKADELAKNFVLFEAGAKKNGFSDAAIKALWD 767 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 768 VLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRR 827 Query: 812 FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFC 869 I+++PP+VN +F GD+ I + L A++ VG+ I+ A + + DF Sbjct: 828 MGIKVLPPNVNESESNFAAQGDDVILFGLTAVRNVGSNVVDSIIRCRKAKGKYSTFPDFL 887 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +V++ N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 888 DKVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGG 947 Query: 930 EKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMG---- 979 SD+ VE S + +E E+ +LG Y S HPL + +L Sbjct: 948 MGDESSDEPGF-GLDVEFSDIEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKSDAAI 1006 Query: 980 --IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G E + I + + ++ Q+K T++G+ T + A E FFP Sbjct: 1007 SQLTGGEHADGAI----VTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|225351454|ref|ZP_03742477.1| hypothetical protein BIFPSEUDO_03049 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157798|gb|EEG71081.1| hypothetical protein BIFPSEUDO_03049 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 1196 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 355/1086 (32%), Positives = 573/1086 (52%), Gaps = 72/1086 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +FV L H+ YSLL+GA + +++ + PA+ ITD N+ A E A Sbjct: 1 MATSGNFVQLHNHTHYSLLDGASKIPDLVRRAKELNMPAVGITDHGNMHGAYEMWSTAVK 60 Query: 65 AGIQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 G++PIIG + DID Q + N + + + + Sbjct: 61 EGVKPIIGIEAYVTPETARQDQTRVSWDTNWNPDIDPQHRRRNPND-VSGGGLITHLTMW 119 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 T EG L++ + L + + R+ L + ++G+I +G SG I Sbjct: 120 AETDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLLLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 A + + +FG D Y+ H ++ ++ +A PL+ATN+S ++ Sbjct: 179 QFDEALRAAGELQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 ED + D ++ + + + + R + +YLK+ EM +F D+PEA +NT+EIA Sbjct: 239 RAEDAGSQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDIPEACDNTLEIAE 298 Query: 280 RCSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337 RC+ + H +P+F +C + E L+ K GLE R G+ + Sbjct: 299 RCNVMFDDHEDGAFMPQF---DCPEGWDETSLFLK-KVEEGLERRY------DGHPPIEV 348 Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397 ++ D+E VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP Sbjct: 349 LKQADYECGVICQMQFCGYFLVVADYINWAKSHGVMVGPGRGSAAGAMVAYAMGITELDP 408 Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457 ++ L+FERFLNP+R+S+PD D+DF D R V+ YV +KYG ++VAQ + +G+++ K A Sbjct: 409 IKHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGDKYGRDKVAQCVIYGTIKTKQA 468 Query: 458 LRDVGRALQMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPS 507 L+D R + +S +R+ K +P + P H + S + A+ FRE +DP Sbjct: 469 LKDSARIMGYEFSMGERITKALPPAQTGGKDIPLHDIFEPSSKRYAEAREFRELYDSDPD 528 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKA 566 V R+ + + +EGL R HA ++G P+S P+ R+D V T E Sbjct: 529 VKRVTDEAMGIEGLIRQTGVHACATIMGSEPISNTSPLLE--RTDGTVTTTLEYHTCETL 586 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GL+K DFLGL LT+++ +L+ + G ++D + IP DD TY LL+ TLG+FQL+S Sbjct: 587 GLVKMDFLGLSNLTVIRDTLNNIEANGKTRIDHTKIPLDDRATYDLLSRGDTLGVFQLDS 646 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM- 681 GMR L+ ++P+ DI AL++LYRPGP +D+ Y RKNG +KI IHP + +P+ Sbjct: 647 DGMRSLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLK 706 Query: 682 --LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 L ET G+I+YQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++ Sbjct: 707 EVLDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEH 766 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G S+ A ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N Sbjct: 767 GYSQEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNK 826 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859 +K + +AR+ IQ++ P VN ++ + + + L AI+ VG I++ + Sbjct: 827 DKTALYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKAAVDAIVKEREN 886 Query: 860 K--PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + + DF RV + LNRR++ESL+ AGA D +R L + +++ Sbjct: 887 DHGKYVNFPDFIRRVPMEALNRRLVESLIKAGAFDSIDPNRRALFTIHEAAINSVVGLKR 946 Query: 918 NRTNKHENIFA-------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 + ++F+ + G + + + + E+ +LG Y S HPL Sbjct: 947 KQAEGQFDLFSDLEDAGEDDAGMGDAMVNVPDVEEWDKKTKLNFEREMLGLYVSDHPLSG 1006 Query: 971 YKPI---LRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 + I LR+M I + A + G + +A ++ + ++ ++KG+ VT + Sbjct: 1007 MQSILVSLREMSIAHLIDRAANMPDGQQVTVAGLITNVDRRMSKKGNPWAIVTIEDLESS 1066 Query: 1027 YEANFF 1032 + FF Sbjct: 1067 IQCMFF 1072 >gi|317475168|ref|ZP_07934435.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] gi|316908621|gb|EFV30308.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] Length = 1274 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 376/1142 (32%), Positives = 592/1142 (51%), Gaps = 127/1142 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 13 FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGPK 72 Query: 61 ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85 K AGI+ PIIGC++ + + M Sbjct: 73 GEIKDLKKRIAGIESGEIACEDKEAEIAACKEKIAEAENKLFKPIIGCEMYVARR---TM 129 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVSR + + + R + L++ EGLI Sbjct: 130 DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMGYYMRP-RTDRNELEKY-HEGLI 187 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195 + + G I + + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 188 VCSACIGGEIPKKIINDQLDEAEEAVRWYKNLFGDDFYLELQRHKATVPRANHEAYPLQQ 247 Query: 196 -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++++ A + + ++ +N+ F+ EE+ EAHD L+ ++ + R T ++ Sbjct: 248 KANAKLLEYAKKYGIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEWM 307 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM +F+D+PEAL NT+EI + + HAPI+P R+ EK Sbjct: 308 KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRKRYTEK 367 Query: 299 ECDDIQKEEEN----------ELRNKAVAGLE------------VRLAQGAIAKGYH--- 333 + D ++EN + + K + G + +LA + Y Sbjct: 368 DLFDEFTQDENGNVVLDEDAAKAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKRLYGDPL 427 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L I Sbjct: 428 SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 487 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 488 TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 547 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509 K A++DV R ++P S+ DRL KL+P+ P ++L AIA + A + DP V Sbjct: 548 ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLVR 607 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565 L+ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 608 DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 667 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTL++++++++ + RGVK+D+ I D TY L T+G FQ E Sbjct: 668 TGLIKMDFLGLKTLSIIKEAVENVRLHRGVKLDIDKISIKDPATYKLYCDGRTIGTFQFE 727 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+++ LK+ Sbjct: 728 SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 787 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI+G KNG Sbjct: 788 TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHDPK 847 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + ++ I K Sbjct: 848 VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSDITTITK 907 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862 + + I+++ P VN + F V + I + L A+KGVG IME + P+ Sbjct: 908 LMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVHSIMEEREKNGPY 967 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQW 914 + DF RV+ N++ LE L AG D F R Q ++ + +Y Sbjct: 968 TGIFDFVQRVNLNSCNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIETLVRYGNR 1027 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E D T E E S R E+ ++G Y S HPLD Y Sbjct: 1028 YQADKAAAVNSLFGGE--NVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHPLDEYS 1085 Query: 973 PILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + E A + G I + +V S ++ ++ G+ G + + E Sbjct: 1086 VVLEHVCNTHMAELEDKAALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAELP 1145 Query: 1031 FF 1032 FF Sbjct: 1146 FF 1147 >gi|312132448|ref|YP_003999787.1| dnae [Bifidobacterium longum subsp. longum BBMN68] gi|311773120|gb|ADQ02608.1| DnaE [Bifidobacterium longum subsp. longum BBMN68] Length = 1185 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 362/1070 (33%), Positives = 565/1070 (52%), Gaps = 62/1070 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++P Sbjct: 7 NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66 Query: 70 IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + QD ++ Q + I L AE + L+ L+ + Sbjct: 67 IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126 Query: 122 LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + +R + + T +G+I +G SG I A + F+ +FG Sbjct: 127 ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A PL+ATN+S ++ ED +A D ++ + Sbjct: 187 KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H +P+ Sbjct: 247 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHEDGAFMPK 306 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F E D E + K GLE R G D ++ D+E VI +M+F Sbjct: 307 FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 356 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S Sbjct: 357 GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 416 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 +PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S ++ Sbjct: 417 LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 476 Query: 475 LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522 + K +P PA +SL I D + FRE +DP R+ E ++ +EGL Sbjct: 477 VTKALP--PAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLI 534 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA ++G P++ P+ R+D + T F E GL+K DFLGL LT+ Sbjct: 535 RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 592 Query: 582 LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L + G +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD Sbjct: 593 IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 652 Query: 641 EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694 DI AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIYQEQ Sbjct: 653 NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L Sbjct: 713 VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ I Sbjct: 773 PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 832 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871 Q++ P VN ++ + + + L AI+ VG I+ A + P F + DF R Sbjct: 833 QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 891 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V LNRR++ESL+ AGA D +R L + +++ + ++F+ + Sbjct: 892 VPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 951 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983 ++ +T+ + + E+ +LG Y S HPL + I LR+M I Sbjct: 952 DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1011 Query: 984 EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1012 VDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061 >gi|282879110|ref|ZP_06287869.1| putative DNA polymerase III subunit alpha [Prevotella buccalis ATCC 35310] gi|281298752|gb|EFA91162.1| putative DNA polymerase III subunit alpha [Prevotella buccalis ATCC 35310] Length = 1235 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 376/1112 (33%), Positives = 569/1112 (51%), Gaps = 97/1112 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-- 68 FVHL VH+ YS+L+G + ++DK AD +AITD N+F EF A Q Sbjct: 4 FVHLHVHTYYSILDGQSPVKRLVDKAVADGMRGLAITDHGNMFGIKEFFDYANTVNKQLK 63 Query: 69 --------PIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 PI GC++ + + K+ + G + +++L GY+ LI+LVS Sbjct: 64 ADGKQPFKPIFGCEMYVARRSRFDKVKDMGDM---SGYHLIVLAKNYRGYKNLIKLVSHA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + ++G E E LI+ + +G + R A + + +K++FG Sbjct: 121 W--EEGYYMRPRTDREELEKYHEDLIVCSACLAGEVPRKIIAGDMAGAREAVEWYKRVFG 178 Query: 180 DRLYVNLQRHRGYD------------RYRESQVV-QLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ +QRH D + R +QV+ LA + + +V TN+ F+ +E+ E Sbjct: 179 DDYYLEIQRHEVKDPSIRANREAYPMQQRANQVIFNLAKEYGVKVVCTNDVHFVDKENAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + R + + K R EM SIFSD+PE + NT+EI + Sbjct: 239 AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNSIFSDVPETMANTLEILNKVETYSI 298 Query: 287 VHAPILPRF-----IEKECDDIQKEEENELRNKAVAG------LEVRLAQ------GAIA 329 H PI+P F KE D QK E +L + + AQ G Sbjct: 299 NHDPIMPNFPIPESFGKEEDWKQKFTEEDLLREFTTDENGENPMSEEDAQKRVDHLGGYE 358 Query: 330 KGYHAQ---DYRQ---------------------RLDFELNVIARMKFSGYFLIVADFIQ 365 K Y + DY Q R+ FEL+V+ M F GYFLIV+DFI+ Sbjct: 359 KMYRIKFEADYLQHLAYEGAKPLYGDPLPKEVDDRIRFELHVMKTMGFPGYFLIVSDFIR 418 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF Sbjct: 419 AAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D R +V+++V +KYGHE A IIT+GS+ K +++DV R ++P + + LCK IP Sbjct: 479 DGRGKVLKWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLERANALCKAIPERLP 538 Query: 485 HPVSLQAIADDSRFREARLADPSVD----RLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + E ++A+ S D ++ ++ LEG R HA G +I P+S Sbjct: 539 DKMKMNLNNAIKCTPELQMAEVSTDIRESNTIKYAKMLEGTVRGTGIHACGFIICRDPIS 598 Query: 541 QLVPM-------YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQR 592 VP+ ++D +++ TQ++ IE+ GLIK DFLGLKTL+ L++++ + + Sbjct: 599 DWVPVSTADDPDFKDEKTN--CTQYDGHVIEETGLIKMDFLGLKTLSELKEAVKNVKLTK 656 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 + +DL IP DD TY L T+G FQ ES+GM+ L + P ED+IA+ +LYRP Sbjct: 657 NIDIDLDKIPIDDELTYKLYQEGRTIGTFQFESAGMQNYLRQLSPTKFEDLIAMNALYRP 716 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+DNI + RK G+E+I P+++ LK+T G+ +YQEQVM +++LL+ ++ E+D Sbjct: 717 GPMDNIPSFIARKKGEEEITYPIPVMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDA 776 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LR+AMGKK K +D K +FI G KNG + + I+ KFA Y FNKSHAA Y+ + Sbjct: 777 LRKAMGKKKKAIVDAMKPKFIEGGKKNGYDENVLDKIWADWEKFASYAFNKSHAACYSWV 836 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831 ++QTA++K HYP EF+AA M+ D + +I K + + I + P VN F V Sbjct: 837 AFQTAYLKAHYPAEFMAAIMSRRKDQITEISKLMDECKSLRIATLGPDVNESYQKFGVNH 896 Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I + LAAIKG+G A I+ E A + + DF RVD ++NR+ ESL +G Sbjct: 897 KGEIRFGLAAIKGMGDAAATAIIQEREAHGLYQDIFDFAHRVDFTQVNRKAFESLALSGG 956 Query: 891 LDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 D FG R + +D + +Y Q + ++ ++F + K Sbjct: 957 FDSFGIPRESYFTANSKGELFIDTLVRYGQLYQNKKSEIEHSLFGGVDAVEIATPPIPKP 1016 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE---SVATIRGNNIRLAAM 1000 + ++ + E ++G Y S HPLD + +L+ M E + ++ A M Sbjct: 1017 ELWSNIEKLNREHDLVGIYLSAHPLDEFSIVLKSMCNTSCTELGDKAELAKKADVVFAGM 1076 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + K TR G G+VT + + E FF Sbjct: 1077 ITEVKDKFTRTGKPCGFVTIEDFSGTGEIAFF 1108 >gi|322689545|ref|YP_004209279.1| DNA polymerase III subunit alpha [Bifidobacterium longum subsp. infantis 157F] gi|320460881|dbj|BAJ71501.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp. infantis 157F] Length = 1189 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 362/1070 (33%), Positives = 565/1070 (52%), Gaps = 62/1070 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++P Sbjct: 11 NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 70 Query: 70 IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + QD ++ Q + I L AE + L+ L+ + Sbjct: 71 IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 130 Query: 122 LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + +R + + T +G+I +G SG I A + F+ +FG Sbjct: 131 ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 190 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A PL+ATN+S ++ ED +A D ++ + Sbjct: 191 KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 250 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H +P+ Sbjct: 251 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHEDGAFMPK 310 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F E D E + K GLE R G D ++ D+E VI +M+F Sbjct: 311 FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 360 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S Sbjct: 361 GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 420 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 +PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S ++ Sbjct: 421 LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 480 Query: 475 LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522 + K +P PA +SL I D + FRE +DP R+ E ++ +EGL Sbjct: 481 VTKALP--PAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLI 538 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA ++G P++ P+ R+D + T F E GL+K DFLGL LT+ Sbjct: 539 RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 596 Query: 582 LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L + G +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD Sbjct: 597 IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 656 Query: 641 EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694 DI AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIYQEQ Sbjct: 657 NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 716 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L Sbjct: 717 VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 776 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ I Sbjct: 777 PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 836 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871 Q++ P VN ++ + + + L AI+ VG I+ A + P F + DF R Sbjct: 837 QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 895 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V LNRR++ESL+ AGA D +R L + +++ + ++F+ + Sbjct: 896 VPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 955 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983 ++ +T+ + + E+ +LG Y S HPL + I LR+M I Sbjct: 956 DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1015 Query: 984 EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1016 VDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065 >gi|298252640|ref|ZP_06976434.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis 5-1] gi|297533004|gb|EFH71888.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis 5-1] Length = 1178 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 361/1068 (33%), Positives = 570/1068 (53%), Gaps = 69/1068 (6%) Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76 H+ YSLL+GA + +++ + PA+AITD N+ A E A AGI+PIIG + Sbjct: 4 HTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKPIIGIEAY 63 Query: 77 IDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQRLIELVSRMYLLD 123 + + + ++ + + T + + L G L++ S L Sbjct: 64 VTPETARQ--DKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNLLKASSVANLEG 121 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182 + + R+ L ++G+I +G SG I + A + F+ +FG D Sbjct: 122 RVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAGEFQDIFGRDNF 180 Query: 183 YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ L H R ++ ++++A PL+ATN+ ++ EED EA D ++ + + + Sbjct: 181 FIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAMLCINSGSRLD 240 Query: 242 QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--VHAPILPRFIEK 298 DR + +YLK+ +M +F + PEA +NT+EIARRC+ + +P+F Sbjct: 241 DPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAFMPQF--- 297 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 +C + E L+ K GLE R + ++ D+E VI +M+F GYFL Sbjct: 298 DCPEGWDETSLFLK-KVEEGLERRYNNNI------PMEVLKQADYECGVICQMQFCGYFL 350 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 +VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ L+FERFLNP+R+S+PD Sbjct: 351 VVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERVSLPDI 410 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DF D R +V+ YV KYG ++VAQ + +G+++ K AL+D R + +S +++ K+ Sbjct: 411 DVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKITKV 470 Query: 479 IPNDPA---HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAST 527 +P PA +SL I D+ FRE DP R+ E ++ +EGL R Sbjct: 471 LP--PAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEGLIRQTGV 528 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA ++G P++ P+ R+D + T F E GL+K DFLGL LT+++ +L Sbjct: 529 HACATIMGSEPITNTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRDTL 586 Query: 587 DFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + G +D + IP DD TY LL+ TLG+FQL+S GMR L ++PD DI A Sbjct: 587 RNIENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPDNFNDISA 646 Query: 646 LVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM---LKETQGVIIYQEQVMQIA 699 L++LYRPGP +D+ Y RKNG + I+ IHP + +P+ L ET G+I+YQEQV A Sbjct: 647 LIALYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQEQVQSAA 706 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 ++L+GYSL +ADVLRRAMGKK E + K++ F G +G S+ A ++++L F+ Y Sbjct: 707 RILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDVLVPFSGY 766 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY +ISY TA++KTHYPVEF+AA + E N +K + +AR+ IQ++ P Sbjct: 767 AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIQVLQP 826 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKP-FDSLEDFCSRVDSKKL 877 VN +++ + + + L AI+ VG I+ E ++ F + DF RV L Sbjct: 827 DVNESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQRVPISAL 886 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--------- 928 NRR++ESL+ AGA D +R L Q D +++ + ++FA Sbjct: 887 NRRLVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADLDSSSDSD 946 Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGYEE 985 + G +IT+ + + E+ +LG Y S HPL + LR+M I + Sbjct: 947 DDNGMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREMSIAQLID 1006 Query: 986 SVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+ G + +A +V S ++ +RKG+ VT + + FF Sbjct: 1007 RARTMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1054 >gi|240167939|ref|ZP_04746598.1| DNA polymerase III subunit alpha [Mycobacterium kansasii ATCC 12478] Length = 1183 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 369/1078 (34%), Positives = 571/1078 (52%), Gaps = 74/1078 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL H+ YS+L+GA +N +L ++ Q PAI +TD N+F A EF A AGI Sbjct: 6 SRSFVHLHNHTEYSMLDGAAKINPMLAEVERLQMPAIGMTDHGNMFGASEFYNSATQAGI 65 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS--------------IVLLVSTAEGYQRLI 113 +PIIG + I + F PS + ++ A G + L Sbjct: 66 KPIIGVEAYIAPASRFDT----RRIFWGDPSQKADDISGSGSYTHLTMMAENATGLRNLF 121 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +L S Q + R+ + E EG+I+ TG SG + + A + Sbjct: 122 KLSSLASFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQEREALEAAAR 180 Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++++ G + ++ L H +R ++ + T +P +ATN+ +++ + H+ L Sbjct: 181 WREIVGPENYFLELMDHGLTIERRVREGLLHIGRTLNIPPLATNDCHYVTRDAAHNHEAL 240 Query: 232 MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHA 289 + V +S +R + D +YLK+ +EM I+ D +P A ++T+ IA R V Sbjct: 241 LCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWT 300 Query: 290 PI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 P +P F + D + LR++ AGL R G A Y R D+E++V Sbjct: 301 PRDRMPVFPVPDGHD----PASWLRHEVAAGLRRRFPDGPPAS------YVTRADYEIDV 350 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I F YFLIVAD I +AK I VGPGRGS AGS+ AYAL ITDIDP+ LLFERF Sbjct: 351 ICAKGFPSYFLIVADLIGYAKSVGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERF 410 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-- 465 LNP+R SMPD DIDF RR E++RY +K+GH+RVAQ+ITFG+++ KAAL+D R Sbjct: 411 LNPERTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYG 470 Query: 466 QMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQ 516 Q ++ DR+ K +P A + L I D + R++EA DP V + + + Sbjct: 471 QPGFAIADRITKALPPAIMAKDIPLSGITDPAHERYKEAAEVRGLIETDPDVRTIYQTAL 530 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 LEGL R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL Sbjct: 531 GLEGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGL 590 Query: 577 KTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT++ ++D + A +G+ +DL +P DD TY LL TLG+FQL+ MR L M Sbjct: 591 RNLTIIGDAIDNIKANKGIDLDLESVPLDDKPTYELLGRGDTLGVFQLDGGPMRDLLRRM 650 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVI 689 QP EDI+A+++LYRPGP+ Y +RKNG++ I IHP L +P+ L ET G+I Sbjct: 651 QPTGFEDIVAVLALYRPGPMGQNAHNDYADRKNGRQAIKPIHPELAEPLEEILAETYGLI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQ+M+IAQ ++GYSL+ AD+LR+AMGKK +E +DK+ E F G NG S + Sbjct: 711 VYQEQIMRIAQKVAGYSLARADILRKAMGKKKREVLDKEYEGFAQGMQANGFSSGAIKAL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++ + FADY FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D Sbjct: 771 WDTILPFADYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADC 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDF 868 R+ I ++PP VN ++F I Y L A++ VG +++ +DK F D+ Sbjct: 831 RKLGITVLPPDVNESGLNFASVGEDIRYGLGAVRNVGANVVGSLIQTRSDKGKFTDFSDY 890 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL-LQSLDNIQKYAQWVEKNRTNKHENIF 927 +++D N++V ESL+ AGA D G++R L L D + + + + Sbjct: 891 LNKIDISACNKKVTESLIKAGAFDSLGHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFG 950 Query: 928 AHEKGT------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 + GT F+ K+ +++ ++ + E+ +LG Y SGHPL+ +L Sbjct: 951 GSDDGTGAADPVFTIKVPDDEWEDKH---KLALEREMLGLYVSGHPLNGVAHLLAGQ--- 1004 Query: 982 GYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ I + +R+ ++ S ++ + G + E FFP Sbjct: 1005 -VDTAIPAILDGDVPNDTQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1061 >gi|308177849|ref|YP_003917255.1| DNA polymerase III subunit alpha [Arthrobacter arilaitensis Re117] gi|307745312|emb|CBT76284.1| DNA polymerase III subunit alpha [Arthrobacter arilaitensis Re117] Length = 1169 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 369/1041 (35%), Positives = 553/1041 (53%), Gaps = 69/1041 (6%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI---- 77 +L+GA L + + A+AITD LF A +F ++A AG++PIIG + + Sbjct: 1 MLDGAARLGELFAEANRQDMKALAITDHGYLFGAFDFWRQATGAGVKPIIGVEAYVTPGT 60 Query: 78 --DMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 D + +K V + LL +G L + SR L + Sbjct: 61 ARDDKTRVKWRTDESQKGDDVSGGGLYNHMTLLSYNNKGMDNLFKGSSRASLDSVFGKYP 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R L E EG+I TG SG + A+ + LFG Y Sbjct: 121 RWDRELLNE-HHEGIIATTGCPSGEVQTKLRLGQYDAAKAAAAELQDLFGKENYFCEIMD 179 Query: 190 RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G + R +++LA ++PLVATN+ + E D +AH+ L+A+ + + + + Sbjct: 180 HGLEIERRITKDLLRLAKELDIPLVATNDLHYTHESDAKAHEALLAINSGSTLDEPTYDQ 239 Query: 248 -------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +YLK+ EM +F +LPEA +NT+ IA R +A +P+F Sbjct: 240 GGSRFAFSGTGYYLKSAREMRELFKELPEACDNTLAIADRVEVSFDTNANYMPKFPCPPG 299 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 +D E + L + GL R G + R++ D+EL+VI +M F GYFL+V Sbjct: 300 ED----ETSWLIKEVDKGLHYRYPNGI------PEASRKQADYELDVIIKMGFPGYFLVV 349 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI W+K + I VGPGRGSGAGS+ AYA+ ITD+DPL L+FERFLNP+R+SMPDFD+ Sbjct: 350 ADFINWSKDHGIRVGPGRGSGAGSMVAYAMRITDLDPLVHGLIFERFLNPERVSMPDFDV 409 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RR EVIRYV KYG ERV+ I+T+GS++ K AL+D R L P+S + L K +P Sbjct: 410 DFDDRRRSEVIRYVTEKYGDERVSMIVTYGSIKTKQALKDSSRVLGYPFSMGESLTKALP 469 Query: 481 ----------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 ND +P S + ++ FR DP R+ E ++ LEGL R HAA Sbjct: 470 PAVMAKDIPLNDIDNPES-KRYSEAGDFRNLVANDPEAARVFETAKGLEGLKRQWGVHAA 528 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+++ P+ +VP+ R ++ +TQF+ E GLIK DFLGL+ LT++ +L+ + Sbjct: 529 GVIMSSDPIIDVVPIMRRIQDGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDALENIE 588 Query: 591 -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 G K+DL + +D E Y+LL TLG+FQL+ MR L+ M+PD EDI A+++L Sbjct: 589 YNTGTKIDLETLTIEDPEAYNLLARGDTLGVFQLDGGPMRSLLKMMRPDNFEDISAVIAL 648 Query: 650 YRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQVMQIAQLLS 703 YRPGP+ ++ Y RK G +++ IHP L +P+ L T G+I+YQEQVM IAQ L+ Sbjct: 649 YRPGPMGANSHTNYALRKTGLQEVTPIHPELAEPLAEILGGTYGLIVYQEQVMAIAQKLA 708 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GYSL +AD+LRRAMGKK K E+DKQ F G + NG S ++++L F+DY FNK Sbjct: 709 GYSLGQADILRRAMGKKKKSELDKQFAGFKQGMNDNGYSDAAVQTLWDILLPFSDYAFNK 768 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 +H+AAY V+SY TA++K HYP E++AA +T D+ +K+ + + R I ++PP VN Sbjct: 769 AHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLALYLNECRHIGITVLPPDVNE 828 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVL 882 ++F I + + AI+ VGT ++EA A+K ++ DF +V + N+R + Sbjct: 829 SALNFTPVGKDIRFGMGAIRNVGTNAVSGMVEARAEKGNYNDFNDFLGKVPAVVCNKRTI 888 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKIT 939 ESL+ AGA D + R L+ + V++N ++F+ E + S + Sbjct: 889 ESLIKAGAFDSMKHPRRALVAIHEEAVDSVIQVKRNEAANQFDLFSALGAEDSSESMHVA 948 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHP-------LDVYK--PILRKMGIKGYEESVATI 990 + + + E+ +LG Y S HP LD Y P+ + G ++ Sbjct: 949 IPDLPDWDKKEKLAYERDMLGLYVSDHPLQGLGSALDQYADMPVTHVLSDDGPQD----- 1003 Query: 991 RGNNIRLAAMVVSKQQKKTRK 1011 G+ I +A M+ Q++ +K Sbjct: 1004 -GHIISIAGMISGLQRRIAKK 1023 >gi|256379743|ref|YP_003103403.1| DNA polymerase III subunit alpha [Actinosynnema mirum DSM 43827] gi|255924046|gb|ACU39557.1| DNA polymerase III, alpha subunit [Actinosynnema mirum DSM 43827] Length = 1176 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 372/1084 (34%), Positives = 567/1084 (52%), Gaps = 88/1084 (8%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SF HL VH+ YS+L+GA L ++ + A AITD N++ A +F ++A AAG+ Sbjct: 2 SDSFAHLHVHTEYSMLDGAAKLKDMFAECERLGMTAAAITDHGNMYGAYDFFRQATAAGV 61 Query: 68 QPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELV 116 +P+IG + + + + N K G P + + T +G L++ Sbjct: 62 KPVIGIEAYMAPESRFNKKRVTWGD-PGQKADDVSASGAYTHQTIWARTVDGLHNLMKCS 120 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 SR Q + R+ L E ++GL+ TG SG + + A + +++ Sbjct: 121 SRASTEGQLGKWPRMDAELLAE-HSKGLMATTGCPSGEVQTRLRLGHEKEAIEAAGKWRE 179 Query: 177 LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++G D +V L H +R +V +A ++P V TN+S + ED EAH+ L+ V Sbjct: 180 IYGADNFFVELMDHGIELERRVRDGLVDIARKLDIPFVVTNDSHYTYAEDREAHEALLCV 239 Query: 235 AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCS----FILQV 287 + R + +YLK+ EM +I S E NT+ +A + F Q Sbjct: 240 QTGKTLQDPSRFKFDGTGYYLKSPQEMYAIDSSDAWQEGCRNTLLVAEKVDTTDMFAFQ- 298 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 ++PR+ E E + R + G+ R +G + + ++++FE+ V Sbjct: 299 --NLMPRYPVPEG----MTEADYFREQVWEGMRRRFPEGV------DEVHTKQVEFEIGV 346 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M F YFL+VADFI WAK+N I VGPGRGS AG++ AYA+ ITD+DPL L+FERF Sbjct: 347 ILQMGFPSYFLVVADFINWAKENGIRVGPGRGSAAGALIAYAMGITDLDPLAHGLIFERF 406 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-- 465 LNPDR+S PD DIDF + RR +VIRYV +K+G ++VAQ+ITFG+++AKAA++D R L Sbjct: 407 LNPDRVSPPDIDIDFDERRRGDVIRYVTDKWGDDKVAQVITFGTIKAKAAIKDSARVLYG 466 Query: 466 QMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLL 512 Q Y+ DR+ K +P DP H + A+ S R DP V ++ Sbjct: 467 QPGYAVADRISKAMPPAVMGKDIPLSGIFDPQH----KRYAEASEVRGLYDTDPQVKEII 522 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + + LEGL R+A HA +++ PL +P+++ + +TQF+ E GL+K D Sbjct: 523 DTGRGLEGLIRNAGVHACAVIMSAEPLMDHIPVWKRPQDGSIITQFDYPTCETLGLLKMD 582 Query: 573 FLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGL LT + +L +A G + VDL + D +TY LL+ TLG+FQL+ MR Sbjct: 583 FLGLSNLTTIDDALKNMAINGKEPVDLDKLELTDKKTYQLLSKGDTLGVFQLDGGPMRDL 642 Query: 632 LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKET 685 L M+PD EDI A+ +LYRPGP+ ++ Y RKN ++I IHP ++ +L T Sbjct: 643 LRLMRPDNFEDISAVGALYRPGPMGANSHTNYALRKNKLQEITPIHPSLAEALEDILGTT 702 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+I+YQEQVM IAQ L+GY+L +AD+LRRAMGKK KE +DK+ F +G NG Sbjct: 703 YGLIVYQEQVMAIAQKLAGYTLGQADLLRRAMGKKKKEILDKEFAGFEAGMLANGFPADA 762 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 ++E+L FADY FNK+H+AAY ++SY TA++K +YP EF+AA +T DN +K + Sbjct: 763 IKTLWEILVPFADYAFNKAHSAAYGLVSYWTAYLKANYPAEFMAALLTTNSDNKDKSAIY 822 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDS 864 + R+ I ++PP VN +F + + L AI+ VG I++A +K F Sbjct: 823 LAECRRMGITVLPPDVNESEREFVAVGEDVRFGLGAIRNVGANVVDAIIKARKEKGRFTD 882 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL----LQSLDNIQKYAQWVEKNRT 920 DF +VD+ N++V+ESL+ AGA D + R L ++++D I +K Sbjct: 883 FSDFLRKVDATVCNKKVVESLIKAGAFDSLNHPRKGLHMVHVEAVDAI----MLTKKEEA 938 Query: 921 NKHENIF-----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 ++F F +I E + S + E+ +LG Y SGHPL+ + +L Sbjct: 939 RGQFDLFGDGGDDGNGSVFDVRIPEEHW---ESKHQLTLEREMLGLYVSGHPLNGVEQVL 995 Query: 976 RKMGIKGYEESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + S+A I G + L ++ S ++ + G + A E Sbjct: 996 DSYS----DASIARILEGDVADGTQVTLGGILASVTRRVNKNGEPWASAMLEDLAGGIEV 1051 Query: 1030 NFFP 1033 FFP Sbjct: 1052 LFFP 1055 >gi|282862139|ref|ZP_06271202.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE] gi|282563164|gb|EFB68703.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE] Length = 1179 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 356/1076 (33%), Positives = 562/1076 (52%), Gaps = 72/1076 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFEAANTMGMSHIAMTDHGNLHGAYDFFHSAQKAGVT 63 Query: 69 PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118 PIIG + + + K Q P + + + + G L +L S Sbjct: 64 PIIGIEAYVAPESRKHKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFKLSSD 123 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 Y ++ R+ + + +EGLI TG SG + A + +K +F Sbjct: 124 AYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDYKDIF 182 Query: 179 GD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G+ R ++ L H +R ++++ +P + TN+S + + AHD L+ + Sbjct: 183 GEGRYFLELMDHGIEIERRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALLCIQT 242 Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA-PIL 292 +S DR R +YLK EM ++ S E NT+ +A++ ++ Sbjct: 243 GKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFEKRDLM 302 Query: 293 PRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 P+F I ++ +E EVR+ G +D +++ ++E+++I +M Sbjct: 303 PKFEIPDGFTEVTWFQE-----------EVRVGMARRYPGGVPEDRQKQAEYEMDIIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPITHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518 DRL K +P DP HP +A R +P V ++++ ++ + Sbjct: 472 GDRLTKAMPADVLGKGIDLSGITDPKHPRYGEA----GEIRGMYENEPDVKKVIDTAKGV 527 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ Sbjct: 528 EGLVRQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRN 587 Query: 579 LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ ++ + A +G+ +++ +P DD +TY LL TLG+FQ + MR L MQP Sbjct: 588 LTIMDDAIKMVKANKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQP 647 Query: 638 DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691 D EDI A+ +LYRPGP +++ Y RKNG+++I IHP ++ LKE T G+I+Y Sbjct: 648 DNFEDISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKETLGLTYGLIVY 707 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQV + AQ+++GYSL EAD+LRR MGKK EE+ K F +GA KNG S +++ Sbjct: 708 QEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQAGAKKNGYSDAAIQALWD 767 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 768 VLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRR 827 Query: 812 FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFC 869 I+++PP+VN +F GD+ I + L A++ VG I+ A + + DF Sbjct: 828 MGIKVLPPNVNESESNFAAQGDDVILFGLTAVRNVGQNVVDSIIRCRKAKGKYSTFPDFL 887 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +V++ N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 888 DKVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGG 947 Query: 930 EKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 SD+ VE S + +E E+ +LG Y S HPL + +L Sbjct: 948 MGEEESDEPGF-GLDVEFSDIEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKS---- 1002 Query: 984 EESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + S++ + G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1003 DASISQLTGGEHADGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|23464753|ref|NP_695356.1| DNA polymerase III subunit alpha [Bifidobacterium longum NCC2705] gi|23325323|gb|AAN23992.1| DNA polymerase III alpha subunit [Bifidobacterium longum NCC2705] Length = 1189 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 363/1070 (33%), Positives = 565/1070 (52%), Gaps = 62/1070 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++P Sbjct: 11 NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 70 Query: 70 IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + QD ++ Q + I L AE + L+ L+ + Sbjct: 71 IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 130 Query: 122 LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + +R + + T +G+I +G SG I A + F+ +FG Sbjct: 131 ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 190 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A PL+ATN+S ++ ED A D ++ + Sbjct: 191 KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAGAQDAMLCINSG 250 Query: 238 TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H +P+ Sbjct: 251 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 310 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F E D E + K GLE R G D ++ D+E VI +M+F Sbjct: 311 FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 360 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S Sbjct: 361 GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 420 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 +PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S ++ Sbjct: 421 LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 480 Query: 475 LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522 + K +P PA +SL I D + FRE +DP R+ E ++ +EGL Sbjct: 481 ITKALP--PAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLI 538 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA ++G P++ P+ R+D + T F E GL+K DFLGL LT+ Sbjct: 539 RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 596 Query: 582 LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L + G +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD Sbjct: 597 IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 656 Query: 641 EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694 DI AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIYQEQ Sbjct: 657 NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 716 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L Sbjct: 717 VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 776 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ I Sbjct: 777 PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 836 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871 Q++ P VN ++ + + + L AI+ VG I+ A + P F + DF R Sbjct: 837 QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 895 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V LNRR++ESL+ AGA D +R LL + +++ + ++F+ + Sbjct: 896 VPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 955 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983 ++ +T+ + + E+ +LG Y S HPL + I LR+M I Sbjct: 956 DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1015 Query: 984 EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1016 VDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065 >gi|283456439|ref|YP_003361003.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] gi|283103073|gb|ADB10179.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] Length = 1188 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 353/1077 (32%), Positives = 567/1077 (52%), Gaps = 69/1077 (6%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L H+ YSLL+GA + +++ + PA+ ITD N+ A E A AGI+PII Sbjct: 1 MQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVNAGIKPII 60 Query: 72 GCQ----------------LDIDMQDNLKMTNQGKTPFPT-----VPSIVLLVSTAEGYQ 110 G + D + +L ++ + P + + + T EG Sbjct: 61 GIEAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWAETDEGLV 120 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L++ + L + + R+ L + ++G+I +G SG I A + Sbjct: 121 NLMKASTDANLEGRVMRYPRMDKEILSKY-SKGIIASSGCPSGIIQTRLLLGQFDEALRA 179 Query: 171 LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 + +FG D Y+ H +R ++ +A PL+ATN+S ++ ED A Sbjct: 180 AGELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVRAEDAGAQ 239 Query: 229 DVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 D ++ + + + + R + +YLK+ EM +F DLPEA +NT+EIA RC+ + Sbjct: 240 DAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAERCNVMFDD 299 Query: 288 H--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H +P+F +C + E L+ K GLE R G + ++ D+E Sbjct: 300 HEDGAFMPQF---DCPEGWDETSLFLK-KVEEGLEKRY------DGNPPIEVLKQADYEC 349 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ L+FE Sbjct: 350 GVICQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPIQHGLIFE 409 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+S+PD D+DF D R V+ YV KYG ++VAQ + +G+++ K AL+D R + Sbjct: 410 RFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIM 469 Query: 466 QMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSVDRLLEIS 515 +S +R+ K +P + P H + + + A+ FRE +DP R+ + + Sbjct: 470 GFDFSMGERVTKALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDAKRVTDEA 529 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFL 574 +EGL R HA ++G P++ P+ R+D V T E GL+K DFL Sbjct: 530 MGIEGLIRQTGVHACATIMGSEPITNTSPLLE--RTDGTVTTTLEYHTCETLGLVKMDFL 587 Query: 575 GLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL LT+++ +L+ + G ++D + IP DD TY LL+ TLG+FQL+S GMR L+ Sbjct: 588 GLSNLTVIRDTLNNIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSDGMRSLLK 647 Query: 634 GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM---LKETQG 687 ++P DI AL++LYRPGP +D+ Y RKNG +KI IHP + +P+ L ET G Sbjct: 648 TLKPSNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLDETYG 707 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ A Sbjct: 708 LIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSQEAAQ 767 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + Sbjct: 768 AVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTALYLG 827 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME--ASADKPFDSL 865 +AR+ IQ++ P VN ++ + + + L AI+ VG I++ S + + Sbjct: 828 EARRMGIQVLSPDVNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESGHGKYVNF 887 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF RV LNRR++ESL+ AGA D +R L + +++ + + Sbjct: 888 PDFVRRVPLSALNRRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRKQAEGQFD 947 Query: 926 IF------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LR 976 +F A + G +++ + + E+ +LG Y S HPL + + LR Sbjct: 948 LFSDLDDSAEQDGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLSSLR 1007 Query: 977 KMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +M I + T+ G + +A ++ + ++ ++KG+ VT + + FF Sbjct: 1008 EMSIAHLIDRAGTMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQCMFF 1064 >gi|320449185|ref|YP_004201281.1| DNA polymerase III subunit alpha [Thermus scotoductus SA-01] gi|320149354|gb|ADW20732.1| DNA polymerase III, subunit alpha [Thermus scotoductus SA-01] Length = 1646 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 352/918 (38%), Positives = 515/918 (56%), Gaps = 86/918 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL H+ +SLL+GA L+++L+ K + + PA+A+TD NLF A+EF +KA A GI+ Sbjct: 6 FAHLHQHTQFSLLDGAAKLSDLLEWVKTVSPEDPALAMTDHGNLFGAVEFYKKATAMGIK 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + + +GK + LL +GYQ L+ L SR YL + + Sbjct: 66 PIIGYEAYVAAESRFD-RKRGKGLDGGYFHLTLLARDFKGYQNLVRLASRAYL-EGFYEK 123 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L+E EGLI L+G I + + +AE RL + +FGDR ++ +Q Sbjct: 124 PRIDREILRE-HAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFGDRFFIEIQN 182 Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + +QV+ + A + L +VATN+ ++ +ED AH+VL+A+ + + +R R Sbjct: 183 HGLPEQRKVNQVLREFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKSTLDDPERWR 242 Query: 248 VTPDH-YLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPI---LPRFIEKE- 299 D Y+K EM ++ + E +NTVEIAR C L + + +PRF E Sbjct: 243 FPCDEFYVKTPEEMRAMLPEEEWGDEPFDNTVEIARMCEVDLPIGDKMVYRIPRFPLPEG 302 Query: 300 ----------------------------------CDDIQKEEENELRNKAVAGLEVRLAQ 325 I + E +A+A +E + + Sbjct: 303 RTEAQYLRELTFKGLLSRYPDRITEGFYREVFRLLGKIPPHGDGEALAEALAQVEGKAWE 362 Query: 326 GAIAK--------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 + K + A+ R +EL+VI RM F GYFLIV D+I WA++N I VGPG Sbjct: 363 ALLPKLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARRNGISVGPG 422 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF RD VI+YV+ + Sbjct: 423 RGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRGR 482 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDS 496 YG E+VAQI TFGSL +KAAL+DV R +P+ + + L KLIP P L +AI Sbjct: 483 YGEEKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLAEAIELVP 542 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 R DP V ++E++ +LEGL RHAS HAAG+VI PL+ LVP+ RD + PVT Sbjct: 543 ELRAEMEKDPRVREVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGRPVT 601 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTK 615 Q++M +E GL+K DFLGL+TLT L ++ + + +GV++D +P DD +T+ LL Sbjct: 602 QYDMGAVEALGLLKMDFLGLRTLTFLDEAKKIVKESKGVELDYDRLPLDDPKTFALLARG 661 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI- 674 T G+FQLES GM + G++P +EDIIALVSLYRPGP+++I Y R +G+E + + Sbjct: 662 ETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVSYVE 721 Query: 675 ----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 + P+L+ET G+ +YQEQ+MQIA ++GYSL EAD+LRRAMGKK EEM K +E Sbjct: 722 FPHAERYLRPILEETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKKVEEMQKHRE 781 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 RF+ GA + G+ + A +F++L FA+YGFNK V+ Y+T + P+E + Sbjct: 782 RFVRGARERGVPEEEANRLFDMLEAFANYGFNKCLPGRARVLDYRTGKL---VPIEAIVR 838 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850 E + + ++++P V F+ G +Y + T T Sbjct: 839 G--------EAKGVWVVSLDESTLRLVPRPV---VAAFQSGRAMVYR-------LRTATG 880 Query: 851 RHIMEASADKPFDSLEDF 868 R ++EA+A+ P + E + Sbjct: 881 R-VLEATANHPLYTPEGW 897 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 105/277 (37%), Positives = 155/277 (55%), Gaps = 14/277 (5%) Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 + SHAAAY+++SYQTA++K HYPVEF+AA +T+E + +K+ ++ +DAR I+++PP + Sbjct: 1238 HNSHAAAYSLLSYQTAYVKAHYPVEFMAALLTVERHDSDKVAEYIRDARAMGIEVLPPDI 1297 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRR 880 N DFKV I + L+A+K VG A+ I+ E PF SL DF R+D K +N+R Sbjct: 1298 NRSGFDFKVVGEEILFGLSAVKNVGEGAAQAILAERERRGPFKSLGDFLKRLDEKVVNKR 1357 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKIT 939 LESL+ AGA D FG R +LL SLD + ++A + + +FA E+ ++ + Sbjct: 1358 TLESLIKAGAFDAFG-DRARLLASLDPLLRWAAESRERERSGMMGLFAEVEEPPLAEALP 1416 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNI 995 L++ + R E+ LG Y SGHP+ Y P LR++ EE IRG + Sbjct: 1417 LDEIT------RLRYEKEALGIYVSGHPVLRY-PGLREVASCTLEELPDFIRGLPPRPRV 1469 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 LA MV +K TR G + T S+ E F Sbjct: 1470 LLAGMVEEVARKPTRSGGMMARFTLSDETGALEVVVF 1506 >gi|213691712|ref|YP_002322298.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523173|gb|ACJ51920.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 1185 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 362/1070 (33%), Positives = 566/1070 (52%), Gaps = 62/1070 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++P Sbjct: 7 NFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKP 66 Query: 70 IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + QD ++ Q + I L AE + L+ L+ + Sbjct: 67 IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126 Query: 122 LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + +R + + T +G+I +G SG I A + F+ +FG Sbjct: 127 ANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A PL+ATN+S ++ ED +A D ++ + Sbjct: 187 KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H +P+ Sbjct: 247 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 306 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F E D E + K GLE R G D ++ D+E VI +M+F Sbjct: 307 FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFC 356 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S Sbjct: 357 GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 416 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 +PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S ++ Sbjct: 417 LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 476 Query: 475 LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522 + K +P PA +SL I D + FRE +DP R+ E ++ +EGL Sbjct: 477 VTKALP--PAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLI 534 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA ++G P++ P+ R+D + T F E GL+K DFLGL LT+ Sbjct: 535 RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTI 592 Query: 582 LQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L + +A +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD Sbjct: 593 IHDTLKNIVANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNF 652 Query: 641 EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694 DI AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIYQEQ Sbjct: 653 NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L Sbjct: 713 VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILV 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ I Sbjct: 773 PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 832 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871 Q++ P VN ++ + + + L AI+ VG I+ A + P F + DF R Sbjct: 833 QVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 891 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V LNRR++ESL+ AGA D +R L + +++ + ++F+ + Sbjct: 892 VPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAE 951 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983 ++ +T+ + + E+ +LG Y S HPL + I LR+M I Sbjct: 952 DGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1011 Query: 984 EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1012 VDRARTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSVQCMFF 1061 >gi|237718270|ref|ZP_04548751.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_2_4] gi|299147818|ref|ZP_07040881.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23] gi|229452454|gb|EEO58245.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_2_4] gi|298514001|gb|EFI37887.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23] Length = 1268 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 379/1145 (33%), Positives = 593/1145 (51%), Gaps = 132/1145 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84 AC A I +PIIGC++ + + +LK Sbjct: 64 GEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 +GK P + +++L GY LI+LVS + + R S L++ EGL Sbjct: 124 ---EGK-PDQSGYHLIVLAKNETGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196 I+ + G + + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 178 IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237 Query: 197 ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +F+D+PEAL NT+EI + + HAPI+P +F E Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYREKFTE 357 Query: 298 KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333 K+ D + EE+ + + K + G + +LA + Y Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 ++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRLCKL+P+ P ++L AIA + A + DP + Sbjct: 538 MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R V+VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + IME + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + ++ ++F E T +E++S + R E+ ++G Y S HPLD Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074 Query: 970 VYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 + +L + E A + G I + +V S ++ ++ G+ G + + Sbjct: 1075 EFSIVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGST 1134 Query: 1028 EANFF 1032 E F+ Sbjct: 1135 EIPFW 1139 >gi|167765014|ref|ZP_02437135.1| hypothetical protein BACSTE_03408 [Bacteroides stercoris ATCC 43183] gi|167697683|gb|EDS14262.1| hypothetical protein BACSTE_03408 [Bacteroides stercoris ATCC 43183] Length = 1274 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 374/1143 (32%), Positives = 594/1143 (51%), Gaps = 129/1143 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 13 FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 72 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQDNLKM 85 AC A I +PIIGC++ + + M Sbjct: 73 GEIKDLKKRIAGIESGEIECEDKEAEIAACRAKITEAENKLFKPIIGCEMYVARR---TM 129 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVSR + + + R + L++ EGLI Sbjct: 130 DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMGYYMRP-RTDRNELEKY-HEGLI 187 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195 + + G + + + + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 188 VCSACIGGEVPKKIINDQLEEAEEAIRWYKNLFGDDYYLELQRHKATVSRANHEAYPLQQ 247 Query: 196 -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++++ A + + ++ +N+ F+ EE+ EAHD L+ ++ + R T ++ Sbjct: 248 KANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEWM 307 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM +F+D+PEAL NT+EI + + HAPI+P ++ EK Sbjct: 308 KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRRKYTEK 367 Query: 299 ECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH--- 333 + D + EE + + K + G E +LA + Y Sbjct: 368 DLFDEFTQDENGNVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKRLYGDPL 427 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L I Sbjct: 428 SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 487 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 488 TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 547 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509 K A++DV R ++P S+ DRL KL+P+ P ++L AIA + A + DP V Sbjct: 548 ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLVR 607 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565 L+ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 608 DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 667 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTL++++++++ + RG+ +D+ I D TY L T+G FQ E Sbjct: 668 TGLIKMDFLGLKTLSIIKEAVENVRLHRGLSLDIDKISIKDPATYKLYCDGRTIGTFQFE 727 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+++ LK+ Sbjct: 728 SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 787 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI+G KNG Sbjct: 788 TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHDAK 847 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + ++ I K Sbjct: 848 VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSDITTITK 907 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPF 862 + + I+++ P VN + F V + I + L A+KGVG + IME A + P+ Sbjct: 908 LMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVQSIMEERAKNGPY 967 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQW 914 + DF RV+ N++ LE L AG D F R Q ++ + +Y Sbjct: 968 TGIFDFVQRVNLNACNKKNLECLALAGGFDSFPELKREQYFAVNTKNEVFIETLVRYGNR 1027 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E D T E E S R E+ ++G Y S HPLD Y Sbjct: 1028 YQADKAAAVNSLFGGE--NVVDIATPEIPQAERWSDLDRLNKERDLVGIYLSAHPLDEYA 1085 Query: 973 PILR---KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +L + E+ A + G I + +V S ++ ++ G+ G + + E Sbjct: 1086 VVLEYVCNTHMAELEDKTALV-GREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEL 1144 Query: 1030 NFF 1032 FF Sbjct: 1145 PFF 1147 >gi|270294536|ref|ZP_06200738.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270276003|gb|EFA21863.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1265 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 377/1143 (32%), Positives = 591/1143 (51%), Gaps = 129/1143 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85 K AGI+ PI+GC++ + + M Sbjct: 64 GEIKDLKKRIAGIESGEIECEDKEAEIADCRAKMAEAESKLFKPIVGCEMYVARR---TM 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVS + + R S L++ EGLI Sbjct: 121 DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGLI 178 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195 + + G + + + + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 179 VCSACIGGEVPKKIINDQLEEAEEAVRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQQ 238 Query: 196 -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++++LA +++ ++ +N+ F+ EE+ EAHD L+ ++ + R T ++ Sbjct: 239 KANAKLLELARKYDIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEWM 298 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM ++F D+PEAL NT+EI + + HAPI+P ++ EK Sbjct: 299 KTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358 Query: 299 ECDDIQKEEENE----------------------LRNKAVAGLEVRLAQGAIAKGYH--- 333 + D ++EN R K A +LA K Y Sbjct: 359 DLFDEFTQDENGKVVLDEDAANAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKKLYGDPL 418 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L I Sbjct: 419 SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 478 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 479 TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 538 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509 K A++DV R ++P S+ DRLCKL+P+ P ++L AIA + A + DP V Sbjct: 539 ATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLVR 598 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 599 DTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 658 Query: 566 AGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTL+++++++ + RG+++D+ I D TY L T+G FQ E Sbjct: 659 TGLIKMDFLGLKTLSIIKEAVANVRLHRGLELDIDKISISDPATYKLYCDGRTIGTFQFE 718 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+++ LK+ Sbjct: 719 SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 778 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FISG KNG Sbjct: 779 TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFISGGQKNGHDPK 838 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 839 VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLANITDITK 898 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862 + + I + P VN + F V + I + L A+KGVG + IME + PF Sbjct: 899 LMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEEREKNGPF 958 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQW 914 + DF RV+ N++ LE L AG D F R Q L+ + +Y Sbjct: 959 KGIFDFVQRVNLTACNKKNLECLALAGGFDSFPELKREQYFAVNSKNEVFLETLVRYGNR 1018 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E D T E E S R E+ ++G Y S HPLD Y Sbjct: 1019 YQADQAAAANSLFGGE--NVVDIATPEIPVAERWSDLDRLNRERDLVGIYLSAHPLDEYS 1076 Query: 973 PILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +L + + E+ A + G I + +V + ++ ++ G+ G + + E Sbjct: 1077 VVLEHVCNTHMAELEDKTALV-GREITMGGIVTAVRRGISKNGNPYGIAKIEDYSGSAEL 1135 Query: 1030 NFF 1032 FF Sbjct: 1136 PFF 1138 >gi|293368783|ref|ZP_06615387.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CMC 3f] gi|292636088|gb|EFF54576.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CMC 3f] Length = 1268 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 379/1145 (33%), Positives = 593/1145 (51%), Gaps = 132/1145 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84 AC A I +PIIGC++ + + +LK Sbjct: 64 GEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 +GK P + +++L GY LI+LVS + + R S L++ EGL Sbjct: 124 ---EGK-PDQSGYHLIVLAKNETGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196 I+ + G + + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 178 IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237 Query: 197 ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +F+D+PEAL NT+EI + + HAPI+P +F E Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357 Query: 298 KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333 K+ D + EE+ + + K + G + +LA + Y Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 ++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRLCKL+P+ P ++L AIA + A + DP + Sbjct: 538 MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R V+VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + IME + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + ++ ++F E T +E++S + R E+ ++G Y S HPLD Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074 Query: 970 VYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 + +L + E A + G I + +V S ++ ++ G+ G + + Sbjct: 1075 EFSIVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGST 1134 Query: 1028 EANFF 1032 E F+ Sbjct: 1135 EIPFW 1139 >gi|310830390|ref|YP_003965491.1| hypothetical protein PPSC2_p0029 [Paenibacillus polymyxa SC2] gi|309249857|gb|ADO59423.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 1305 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 356/999 (35%), Positives = 551/999 (55%), Gaps = 58/999 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS YSLL+G +++I+ K + A AITD +F LE+ ++ AG PI Sbjct: 148 WADLHRHSGYSLLDGGSKISDIVRKT----EYAGAITDHGAMFGTLEYYKQMRKAGKLPI 203 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + + K N ++LL EG++ L++L S+ + + Sbjct: 204 LGFEAYAETIQGEKKGNH----------LLLLAKNEEGFKNLVKLTSKSQ--ENFFRKPH 251 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L G +G+I T + + N + A+ ++FG + YV LQRH Sbjct: 252 VNYDMLGTYG-KGIISSTSCMGSEVSQLLLKNKYEDAKYVAKALAEIFGKEDYYVELQRH 310 Query: 190 RGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G+D R Q++Q+A +L ++ T +S + +ED H+VL+ + +S DR + Sbjct: 311 -GFDEERIVNPQLIQIARELDLKIIGTTDSHYTEKEDAYDHEVLLCIGTVKKMSDYDRMQ 369 Query: 248 VTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECDDIQK 305 Y L E+ +FSD+PEALENT+EIA +CS L+++ +P+F ++ Sbjct: 370 FPGTGYHLHTSDEVEELFSDIPEALENTLEIAEKCSGLTLEMNKVYMPKF------NVPA 423 Query: 306 EEENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 NE L++ A G + R +G ++YR+RL FEL VI M F GYFLIV D Sbjct: 424 PFVNEMDYLKHLAWQGFKERF-EGTEKDN---EEYRERLTFELEVIKGMGFPGYFLIVGD 479 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F+ +AK+ I VGPGRGS G++TAY L ITD+DP+ LLFERFLNPDR+SMPD D+DF Sbjct: 480 FVDFAKRKGILVGPGRGSVVGALTAYCLHITDLDPIPLGLLFERFLNPDRVSMPDIDMDF 539 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 DRR+EVI YV+NKYG V++IITFG++ A+AA++DVGR L P S ++ K IP Sbjct: 540 PDDRREEVIDYVKNKYGEHAVSRIITFGTMAARAAIKDVGRVLDYPVSMTAKIAKSIPAV 599 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A + F + + V ++++I+ KLEGL RHAS HA G+VI +S Sbjct: 600 PKMTIK-KAFKESPEFLKMYETEADVKKIVDIAMKLEGLPRHASMHACGVVIAPSSISDY 658 Query: 543 VPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--- 595 +P ++ + TQFNM E+ G++K DFLGL+T+T++ KSL + R ++ Sbjct: 659 IPEILMENKETKLKERTTQFNMAECEEMGILKMDFLGLRTMTVISKSLSNVNPRRIREGK 718 Query: 596 --VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI----------EDI 643 + IP +D Y + + G+FQLES GMR ++ + D + E + Sbjct: 719 KPLHYLDIPLNDKRVYQDIAKGESYGVFQLESGGMRSFMKELFADALQTGENTMELFERL 778 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 IA VSLYRPGP+D I Y E I HP + +L+ T GVI+YQEQ M I + L+ Sbjct: 779 IAGVSLYRPGPLDYIPDYLKNMQNPENIQYDHPKLKSILEFTYGVIVYQEQCMFIVRELA 838 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 ++ EAD +R+A KK ++ + E+F++G K GIS+ +A I+ + KF +Y FNK Sbjct: 839 DFTKGEADNVRKAFSKKKEKMIKPLGEKFVAGCLKKGISQEVAERIWGKMRKFGEYAFNK 898 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SHA AY+V+S TAW+K +YPVEF+ A + ++ +K+K F ++ I+I+PP V+ Sbjct: 899 SHAGAYSVLSVVTAWLKFYYPVEFMTAVLNSYINKADKLKLFLSVVKKMKIEILPPDVDR 958 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-DSKKLNRRVL 882 F V +RI + L IKG+G + I E +A+ F+ +D R+ K+++++L Sbjct: 959 SGQMFTVDGDRIRFGLQGIKGLGKASENVIEERAANGEFEDFQDLAERMAKHSKVDKKIL 1018 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLE 941 E++V++G++D F +R L+ LD I A +K + ++F+ +E+ KI + Sbjct: 1019 EAMVYSGSVDSFPGTRSAKLEVLDKILASASDEKKMHNSGQMDLFSMYEEFKVYKKIVIP 1078 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 + + E E+ GFY S HPLD Y + G+ Sbjct: 1079 DKKEFHKKFKLEKEKEYAGFYISEHPLDEYASYFAREGV 1117 >gi|160891291|ref|ZP_02072294.1| hypothetical protein BACUNI_03740 [Bacteroides uniformis ATCC 8492] gi|317481161|ref|ZP_07940236.1| DNA polymerase III [Bacteroides sp. 4_1_36] gi|156859512|gb|EDO52943.1| hypothetical protein BACUNI_03740 [Bacteroides uniformis ATCC 8492] gi|316902657|gb|EFV24536.1| DNA polymerase III [Bacteroides sp. 4_1_36] Length = 1265 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 377/1143 (32%), Positives = 591/1143 (51%), Gaps = 129/1143 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85 K AGI+ PI+GC++ + + M Sbjct: 64 GEIKDLKKRIAGIESGEIECEDKEAEIADCRAKMAEAESKLFKPIVGCEMYVARR---TM 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVS + + R S L++ EGLI Sbjct: 121 DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGLI 178 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195 + + G + + + + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 179 VCSACIGGEVPKKIINDQLEEAEEAVRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQQ 238 Query: 196 -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++++LA +++ ++ +N+ F+ EE+ EAHD L+ ++ + R T ++ Sbjct: 239 KANAKLLELARKYDIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEWM 298 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM ++F D+PEAL NT+EI + + HAPI+P ++ EK Sbjct: 299 KTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358 Query: 299 ECDDIQKEEENE----------------------LRNKAVAGLEVRLAQGAIAKGYH--- 333 + D ++EN R K A +LA K Y Sbjct: 359 DLFDEFTQDENGKVVLDEDAANAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKKLYGDPL 418 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L I Sbjct: 419 SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 478 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 479 TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 538 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509 K A++DV R ++P S+ DRLCKL+P+ P ++L AIA + A + DP V Sbjct: 539 ATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLVR 598 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 599 DTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 658 Query: 566 AGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTL+++++++ + RG+++D+ I D TY L T+G FQ E Sbjct: 659 TGLIKMDFLGLKTLSIIKEAVANVRLHRGLELDIDKISISDPATYKLYCDGRTIGTFQFE 718 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+++ LK+ Sbjct: 719 SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 778 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FISG KNG Sbjct: 779 TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFISGGQKNGHDPK 838 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 839 VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLANITDITK 898 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862 + + I + P VN + F V + I + L A+KGVG + IME + PF Sbjct: 899 LMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEEREKNGPF 958 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQW 914 + DF RV+ N++ LE L AG D F R Q L+ + +Y Sbjct: 959 KGIFDFVQRVNLTACNKKNLECLALAGGFDSFPELKREQYFAVNSKNEVFLETLVRYGNR 1018 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E D T E E S R E+ ++G Y S HPLD Y Sbjct: 1019 YQADQAAAANSLFGGE--NVVDIATPEIPVAERWSDLDRLNRERDLVGIYLSAHPLDEYS 1076 Query: 973 PILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +L + + E+ A + G I + +V + ++ ++ G+ G + + E Sbjct: 1077 VVLEHVCNTHMTELEDKTALV-GREITMGGIVTAVRRGISKNGNPYGIAKIEDYSGSAEL 1135 Query: 1030 NFF 1032 FF Sbjct: 1136 PFF 1138 >gi|328957332|ref|YP_004374718.1| DNA polymerase III subunit alpha [Carnobacterium sp. 17-4] gi|328673656|gb|AEB29702.1| DNA polymerase III subunit alpha [Carnobacterium sp. 17-4] Length = 1112 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 365/1035 (35%), Positives = 571/1035 (55%), Gaps = 60/1035 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV LQV SSYSLL+ S+ ++ K AIA+TD N L+ ++F + I+P Sbjct: 2 SFVQLQVISSYSLLQSTTSIEELVVKAKERGYRAIALTDHNVLYGMVDFYKMCKKHQIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G LD+ N + T SI+LL A GY+ L+ L S LL + + Sbjct: 62 ILGLTLDVGGVVNNEETY----------SIILLAKNARGYESLMALSSEKMLLTENE--- 108 Query: 130 RICLSWL--QEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYV 184 WL + I ++ LI +T G G + + + A K + ++ F + Y+ Sbjct: 109 -----WLTIEHISQYSQNLIAITPGEKGETESFLLQDEKKSAAKVVGKWQAAFPKQQFYL 163 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H+ +++ V +LA VA + ++ D + VL A+ V+S + Sbjct: 164 GIQLHQKLKVIQDA-VNELANETGTLTVALQDIRYIDAADDFSTTVLRAINKGEVLSNQQ 222 Query: 245 RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 ++YL +E+ +F D L +A + T E+A+ + +H +LP+F + D Sbjct: 223 EAE-EGEYYLPESNEVEKLFKDNGLEQAAQQTNEVAKMIDADISLHQQLLPKFPLPK-DT 280 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E L+ + + GL +R+ Q + Y +RL++EL VI +M F YFLIV D Sbjct: 281 VTTEF---LKEQCLKGLTLRVVQ-------PDERYTKRLEYELAVIQKMGFEDYFLIVWD 330 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 + +A K I G GRGS AGS+ AY L ITD+DP+ ++LLFERFLN +R +MPD D+DF Sbjct: 331 VMAYAHKVKIVTGAGRGSAAGSLVAYLLEITDVDPIEYNLLFERFLNEERYTMPDIDLDF 390 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 +RR+E++ YV+NKYG VAQI TFG+L AK AL+DV R + S+ + K IP Sbjct: 391 PDNRREEILHYVKNKYGQNHVAQIATFGTLAAKMALKDVARVFGLSPSEANVWSKAIPKI 450 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 ++L+ +S + + ++LL + ++++EGL RH STHAAGIVI D PL+Q Sbjct: 451 LG--ITLEKAYKESVTLRKLVEENDKNKLLFKTAKRIEGLPRHISTHAAGIVISDNPLTQ 508 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLS 599 VP+ + ++ +TQ+ M +E+ GL+K DFLGLK LT++ +L L QR G ++DL Sbjct: 509 YVPLQKG-GGEILLTQYPMGNVEEIGLLKMDFLGLKNLTIIDNTLK-LVQRETGKRLDLL 566 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP D ET L +GIFQ ES+G++ L ++P IEDI A+ +LYRPGP++ I Sbjct: 567 TIPMQDQETLQLFRQADMVGIFQFESTGIKNVLRRLEPSSIEDIAAVNALYRPGPMEQID 626 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK G I H + +L T GV++YQEQVMQ+A + GY+L +AD+LRRA+GK Sbjct: 627 TFIKRKKGVLPIEYPHESLSEILAVTYGVMVYQEQVMQVAAKMGGYTLGQADILRRAIGK 686 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K +DK++ FISGA++ G +K +A+ +++ + +FA+YGFN+SHA AY+ I+YQ A++ Sbjct: 687 KQKSIIDKERHHFISGANQLGYTKEVAMQVYDYIERFANYGFNRSHAVAYSFIAYQMAYL 746 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP F A + +++ K+K++ +A++ I+++PP++NT F + +N I + Sbjct: 747 KAHYPNAFFVALLNSALNSSAKMKEYIIEAKKRKIKVIPPNINTSFSGFTLTENNILFGF 806 Query: 840 AAIKGV-GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 +IKG+ I +D + L DF R+D K L ++ L++AGA D F YSR Sbjct: 807 NSIKGLRRDMIVEMIQNRKSDGKYLGLIDFLKRLDKKWLKPEYIKPLIYAGAFDQFDYSR 866 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 LL S+D I Q ++ + N ++F K + L + ++ Sbjct: 867 GALLASVDGI---VQSIKMSGNNI--DLFELLKPKYEFAPDLTLEEKLETEEQY------ 915 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG Y SGHP + Y LR+ K E + G R+ MV + + +T+KG + +V Sbjct: 916 LGTYLSGHPTEKYDQ-LRQW--KQVEYTSELTIGKTSRIIGMVKNVHKIRTKKGESMAFV 972 Query: 1019 TFSEPAKEYEANFFP 1033 T S+ + + FP Sbjct: 973 TISDTSGDCSLTLFP 987 >gi|294628828|ref|ZP_06707388.1| DNA polymerase III, alpha subunit [Streptomyces sp. e14] gi|292832161|gb|EFF90510.1| DNA polymerase III, alpha subunit [Streptomyces sp. e14] Length = 1179 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 360/1075 (33%), Positives = 569/1075 (52%), Gaps = 70/1075 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ D IA++D NL A +F A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHTAQKAGVT 63 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117 PIIG + + + + N + G+ P + + + G L L S Sbjct: 64 PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFRLSS 122 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Y ++ R+ + + +EG++ TG SG + A K ++ + Sbjct: 123 DAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGQFDEALKSAADYQDI 181 Query: 178 FG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 FG DR ++ L H G D R R+ ++++ +P + TN+S + + AHD L+ Sbjct: 182 FGKDRYFLELMDH-GIDIEHRVRDG-LLEIGKKLGIPPLVTNDSHYTYAHEATAHDALLC 239 Query: 234 VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFI-LQVHA 289 + +S DR + +YLK+ EM +I S E NT+ +A + V Sbjct: 240 IQTGKNLSDPDRFKFDGTGYYLKSTDEMYAIDSSDAWQEGCANTLLVAEMVDTTGMFVKR 299 Query: 290 PILPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 ++P+F DI + E + + G+E R G +D ++++++E++V Sbjct: 300 DLMPKF------DIPEGYTEVTWFKEEVRRGMERRFPGGI------PEDRQKQVEYEMDV 347 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DP+ L+FERF Sbjct: 348 IIQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERF 407 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L Sbjct: 408 LNPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGY 467 Query: 468 PYSQVDRLCKLIPND-------------PAHPVSLQAIADDSRFREARLADPSVDRLLEI 514 PY+ DR+ K +P D P+HP +A R +P V ++++ Sbjct: 468 PYAMGDRITKAMPADVLGKGIDLDGITNPSHPRYSEA----GEVRAMYENEPDVKKVIDT 523 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ +EGL R HAAG+++ +++ VP++ + +TQ++ E GL+K DFL Sbjct: 524 AKGVEGLVRQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFL 583 Query: 575 GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ ++ + + +G+ +DL +P DD T+ LL TLG+FQ + MR L Sbjct: 584 GLRNLTIMDDAVKMVKSNKGIDIDLLALPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLR 643 Query: 634 GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687 M+PD EDI A+ +LYRPGP +D+ Y RKNG ++I IHP ++ LKE T G Sbjct: 644 LMKPDNFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHPELEAPLKEVLDVTYG 703 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQV + AQ+++GYSL EAD+LRR MGKK +E+ K F +GA KNG S Sbjct: 704 LIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAKKNGYSDEAIQ 763 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++++L FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T D+ +K + Sbjct: 764 ALWDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLN 823 Query: 808 DARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSL 865 + R+ I+++PP+VN +F GD+ I + L+A++ VGT I+ A + S Sbjct: 824 ECRRMGIKVLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVESIIRTRKAKGKYSSF 883 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 D+ +V++ N+R ESL+ AGA D G++R L + + V++ + Sbjct: 884 PDYLDKVEAVVCNKRTTESLIKAGAFDTMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFD 943 Query: 926 IFA--HEKGTFSDKITLE-KFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 +F E+ + L+ +FS + + + E+ +LG Y S HPL + +L Sbjct: 944 LFGGMGEETSSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLENVLADKAD 1003 Query: 981 KGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1004 AGISQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|160885119|ref|ZP_02066122.1| hypothetical protein BACOVA_03117 [Bacteroides ovatus ATCC 8483] gi|156109469|gb|EDO11214.1| hypothetical protein BACOVA_03117 [Bacteroides ovatus ATCC 8483] Length = 1268 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 378/1146 (32%), Positives = 595/1146 (51%), Gaps = 134/1146 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84 AC A I +PIIGC++ + + +LK Sbjct: 64 GEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 +GK P + +++L GY LI+LVS + + R S L++ EGL Sbjct: 124 ---EGK-PDQSGYHLIVLAKNETGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196 I+ + G + + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 178 IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237 Query: 197 ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +F+D+PEAL NT+EI + + HAPI+P +F E Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357 Query: 298 KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333 K+ D + EE+ + + K + G + +LA + Y Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 ++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRLCKL+P+ P ++L AIA + A + DP + Sbjct: 538 MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R V+VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + IME + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + ++ ++F E T +E++S + R E+ ++G Y S HPLD Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074 Query: 970 VYKPILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 + +L + + E+ A + G I + +V S ++ ++ G+ G + + Sbjct: 1075 EFSIVLEHVCNTRMADLEDKAALV-GREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGS 1133 Query: 1027 YEANFF 1032 E F+ Sbjct: 1134 TEIPFW 1139 >gi|257784701|ref|YP_003179918.1| DNA polymerase III, alpha subunit [Atopobium parvulum DSM 20469] gi|257473208|gb|ACV51327.1| DNA polymerase III, alpha subunit [Atopobium parvulum DSM 20469] Length = 1278 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 349/1030 (33%), Positives = 545/1030 (52%), Gaps = 75/1030 (7%) Query: 67 IQPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 I+PI GC+ + D + K T Q + ++LL GY L++++S + Sbjct: 125 IKPIFGCEAYFILDDCIEKGTKQVRY------HLILLAKNETGYVNLMKMMSEAGSKEMF 178 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R L L+ EG+I + SG I R F + AE+ ++ +FGD Y+ Sbjct: 179 YYKPRTTLEMLKRY-HEGIICTSACVSGIIPRMLFEGRPEEAERWAKIYQDIFGDDFYLE 237 Query: 186 LQRHR-------GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 +Q H GY DR ++V++ + + +VATN++ +L++ED D+ + Sbjct: 238 IQDHGLSDPSWGGYTDRTLAERIVKMGHDLGIKVVATNDNHYLTKEDASVQDIASCIGSG 297 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V ++R R+T + YLK+ EM IFS PEA+ENT+E+A +C++ L LP+F Sbjct: 298 ARVDDENRKRMTGSEFYLKSEQEMRQIFSWCPEAIENTIEVANKCNYELDWTHMYLPKF- 356 Query: 297 EKECDDIQKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 D+ + E +E R + GL R + + + R ++E ++I + F+ Sbjct: 357 ----PDLAEGETSEERFRKECELGLARRYGDDWQNVVINEINVKDRFEYEYDIICKKGFA 412 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFLIV ++++WAK+N I VGPGRGS AG++ AYA+ IT DPL L+FERFL+P R Sbjct: 413 DYFLIVQEYVRWAKENGIGVGPGRGSAAGAIVAYAMDITSFDPLENGLMFERFLSPQRSE 472 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD D+DF +RR EV+ +V+ YG ERV+ +IT+ +++AK A+ D R L P R Sbjct: 473 MPDIDMDFDDERRLEVVEHVRQIYGSERVSHVITYSTIKAKQAINDACRVLGYPVYMGQR 532 Query: 475 LCKLIPNDPAHPVSL--------QAIAD--DSRFREARLADPSVDRLLEISQKLEGLYRH 524 L K+IP DP + Q AD + F EA DP R+++ + +EGL+R Sbjct: 533 LSKMIPGDPNAHLKFVLHKAQEGQKGADQYSADFEEAYENDPDARRIIDAALSIEGLHRG 592 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HA ++I P++ VP D + + +TQ+ + GL+K DFLGL+TLT++ + Sbjct: 593 EGVHACAVLIAPTPVNDHVPTKVDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISR 652 Query: 585 SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++ + G+ +D+ IPF D E Y LL T G+FQ+ES+GM ++GM+P + I Sbjct: 653 AIKNVKDSYGIDIDVDSIPFTDPEIYRLLREGRTAGVFQVESAGMTATIKGMRPTEYKHI 712 Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 +AL++LYRPGP++ +V Y NR NG+E++ P + +L+ET G ++YQEQVMQI+ Sbjct: 713 VALIALYRPGPLNAGMVTSYINRMNGREEVKDYDPRLHDILEETYGTMVYQEQVMQISMK 772 Query: 702 LSGYSLSEADVLR--------RAMGKKIKEEMDKQKE----RFISGASKNGISKTIAVNI 749 +SG++ E+D +R + M + ++ D E + +GA +NG +++A +I Sbjct: 773 MSGFTAGESDKVRKAVAKKKIKLMQEVVQHWDDGTDETMEAHWKNGAVRNGFDRSVAESI 832 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++ + +FA Y FNKSH+A YA++ QTAW+K HYP EF+AA +T M +KI + Sbjct: 833 WDDVLEFASYAFNKSHSAGYAILVMQTAWIKAHYPHEFMAAVLTSYMGKTDKIVHYVSAC 892 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDF 868 R I+I+PP +N DF I + A I+GVG IM E PF ++ DF Sbjct: 893 RHEGIKILPPDINESGKDFTATKEGIRFGFAGIRGVGAGVGEAIMLERQKGGPFANIHDF 952 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD--NIQKYAQWVEKNRTNKHE-- 924 R+D+ + R V+E+L+ AGA D GY+RMQ++ +D N Q K + +K Sbjct: 953 VDRMDASQAKRNVVEALIKAGAFDSTGYTRMQMMSFVDKNNPQNIIDAATKRQKDKAVGQ 1012 Query: 925 ----NIFAHEKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPIL---R 976 ++FA +G+ I E VE + + E VLG Y S HPL Y+ L R Sbjct: 1013 FSMFDMFAEVEGSGFSDIVPEPDGVEWDRRFKLTKEYEVLGIYVSDHPLRPYEYALAKSR 1072 Query: 977 KMGIKGYEESV-------------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 + EE+V G IR A MV + ++ T+ G + VT + Sbjct: 1073 DYALAEIEENVEVQLPNGAMSQQFKVPEGKPIRFAGMVTNVMKRTTKNGDPMAIVTLEDM 1132 Query: 1024 AKEYEANFFP 1033 FP Sbjct: 1133 EGSVTIVMFP 1142 Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58 +FVHL HS +S+L+GA + +++ K PA+A+TD LF +F Sbjct: 2 AFVHLHNHSDFSILDGASRVPDMVSKAVEFGMPALALTDHGYLFGIPDF 50 >gi|260174216|ref|ZP_05760628.1| DNA polymerase III alpha subunit [Bacteroides sp. D2] gi|315922485|ref|ZP_07918725.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696360|gb|EFS33195.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1268 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 377/1146 (32%), Positives = 595/1146 (51%), Gaps = 134/1146 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84 AC A I +PIIGC++ + + +LK Sbjct: 64 GEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 +GK P + +++L GY LI+LVS + + R S L++ EGL Sbjct: 124 ---EGK-PDQSGYHLIVLAKNETGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196 I+ + G + + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 178 IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237 Query: 197 ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +F+D+PEAL NT+EI + + HAPI+P +F E Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357 Query: 298 KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333 K+ D + EE+ + + K + G + +LA + Y Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 ++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRLCKL+P+ P ++L AIA + A + DP + Sbjct: 538 MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R ++VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNIEVDVDAIDISDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + IME + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRQNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + ++ ++F E T +E++S + R E+ ++G Y S HPLD Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074 Query: 970 VYKPILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 + +L + + E+ A + G I + +V S ++ ++ G+ G + + Sbjct: 1075 EFSIVLEHVCNTRMADLEDKAALV-GREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGS 1133 Query: 1027 YEANFF 1032 E F+ Sbjct: 1134 TEIPFW 1139 >gi|218129192|ref|ZP_03457996.1| hypothetical protein BACEGG_00767 [Bacteroides eggerthii DSM 20697] gi|217988570|gb|EEC54890.1| hypothetical protein BACEGG_00767 [Bacteroides eggerthii DSM 20697] Length = 1265 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 375/1142 (32%), Positives = 592/1142 (51%), Gaps = 127/1142 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGPK 63 Query: 61 ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85 K AGI+ PIIGC++ + + M Sbjct: 64 GEIKDLKKRIAGIESGEIACEDKEAEIAACKEKIAEAENKLFKPIIGCEMYVARR---TM 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVSR + + + R + L++ EGLI Sbjct: 121 DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMGYYMRP-RTDRNELEKY-HEGLI 178 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195 + + G I + + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 179 VCSACIGGEIPKKIINDQLDEAEEAVRWYKNLFGDDFYLELQRHKATVPRANHEAYPLQQ 238 Query: 196 -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++++ A + + ++ +N+ F+ EE+ EAHD L+ ++ + R T ++ Sbjct: 239 KANAKLLEYAKKYGIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEWM 298 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM +F+D+PEAL NT+EI + + HAPI+P ++ EK Sbjct: 299 KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRKKYTEK 358 Query: 299 ECDDIQKEEEN----------ELRNKAVAGLE------------VRLAQGAIAKGYH--- 333 + D ++EN + + K + G + +LA + Y Sbjct: 359 DLFDEFTQDENGNVVLDEDAAKAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKRLYGDPL 418 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L I Sbjct: 419 SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 478 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 479 TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 538 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509 K A++DV R ++P S+ DRL KL+P+ P ++L AIA + A + DP V Sbjct: 539 ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQVAEASPDPLVR 598 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565 L+ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 599 DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 658 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTL++++++++ + RGVK+D+ I D TY L T+G FQ E Sbjct: 659 TGLIKMDFLGLKTLSIIKEAVENVRLHRGVKLDIDKISIKDPATYKLYCDGRTIGTFQFE 718 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+++ LK+ Sbjct: 719 SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 778 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI+G KNG Sbjct: 779 TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHDPK 838 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + ++ I K Sbjct: 839 VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSDITTITK 898 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862 + + I+++ P VN + F V + I + L A+KGVG IME + P+ Sbjct: 899 LMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVHSIMEEREKNGPY 958 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQW 914 + DF RV+ N++ LE L AG D F R Q ++ + +Y Sbjct: 959 TGIFDFVQRVNLNSCNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIETLVRYGNR 1018 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E D T E E S R E+ ++G Y S HPLD Y Sbjct: 1019 YQADKAAAVNSLFGGE--NVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHPLDEYS 1076 Query: 973 PILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + E A + G I + +V S ++ ++ G+ G + + E Sbjct: 1077 VVLEHVCNTHMAELEDKAALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAELP 1136 Query: 1031 FF 1032 FF Sbjct: 1137 FF 1138 >gi|154488936|ref|ZP_02029785.1| hypothetical protein BIFADO_02245 [Bifidobacterium adolescentis L2-32] gi|154083073|gb|EDN82118.1| hypothetical protein BIFADO_02245 [Bifidobacterium adolescentis L2-32] Length = 1196 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 355/1085 (32%), Positives = 571/1085 (52%), Gaps = 70/1085 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +FV L H+ YSLL+GA + +++ + PA+ ITD N+ A E A Sbjct: 1 MATSANFVQLHNHTHYSLLDGASKIPDLVKRAKELGMPAVGITDHGNMHGAYEMWSAAVN 60 Query: 65 AGIQPIIGCQ----------------LDIDMQDNLKMTNQGKTP-----FPTVPSIVLLV 103 AGI+PIIG + D + +L ++ + P + + + Sbjct: 61 AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPLHRRRNPDDVSGGGVITHLTMWA 120 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 EG L++ + L + + R+ L + ++G+I +G SG I Sbjct: 121 ENDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLRLGQ 179 Query: 164 SQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221 A + F+ +FG D Y+ H ++ ++ +A PL+ATN+S + Sbjct: 180 FDDALRAAGEFQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYTR 239 Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 ED A D ++ + + + + R + +Y+K+ EM +F DLPEA +NT+EIA R Sbjct: 240 AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYIKSAEEMRELFKDLPEACDNTLEIAER 299 Query: 281 CSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 C+ + H +P+F +C + E L+ K GLE R G + + Sbjct: 300 CNVMFDDHEDGAFMPQF---DCPEGWDETSLFLK-KVEEGLERRY------NGKPSLEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 ++ D+E VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DPL Sbjct: 350 RQADYECGVICQMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 L+FERFLNP+R+S+PD D+DF D R V+ YV KYG ++VAQ + +G+++ K AL Sbjct: 410 EHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQAL 469 Query: 459 RDVGRALQMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSV 508 +D R + +S D++ K +P + P H + S + A+ FRE +DP Sbjct: 470 KDSARIMGYDFSVGDKITKALPPAQTGGKDIPLHDIFDPSAKRYAEAREFRELYDSDPDA 529 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAG 567 R+ + + +EGL R HA ++G P++ P+ R+D V T E G Sbjct: 530 KRITDEAMGIEGLIRQTGVHACATIMGSEPITNTSPLLE--RTDGTVTTTLEYHTCETLG 587 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGL LT+++ +L+ + G ++D + IP DD TY LL+ TLG+FQL+S Sbjct: 588 LVKMDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRPTYDLLSRGDTLGVFQLDSD 647 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM-- 681 GMR L+ ++P+ DI AL++LYRPGP +D+ Y RKNG +KI IHP + +P+ Sbjct: 648 GMRSLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKE 707 Query: 682 -LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 L ET G+I+YQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G Sbjct: 708 VLDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHG 767 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 S+ A ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N + Sbjct: 768 YSEEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKD 827 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM--EASA 858 K + +AR+ IQ++ P VN ++ + + + L AI+ VG I+ + Sbjct: 828 KTALYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKNAVDAIIAERENG 887 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 + + DF RV + LNRR++ESL+ AGA D +R L + +++ Sbjct: 888 HGKYVNFTDFIKRVPLEALNRRLVESLIKAGAFDSIDPNRRALFTIHETAINSVVGLKRK 947 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVY 971 + ++FA + + + V+ + + E+ +LG Y S HPL Sbjct: 948 QAEGQFDLFADLDDSKENDSAMGDAMVQVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGM 1007 Query: 972 KPI---LRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 + I LR+M I + ++ G + +A ++ + ++ ++KG+ VT + Sbjct: 1008 QSILVSLREMSIAHLIDRAGSMPDGQQVTIAGLITNVDRRVSKKGNPWAIVTVEDLESSI 1067 Query: 1028 EANFF 1032 + FF Sbjct: 1068 QCMFF 1072 >gi|329957519|ref|ZP_08297994.1| DNA polymerase III, alpha subunit [Bacteroides clarus YIT 12056] gi|328522396|gb|EGF49505.1| DNA polymerase III, alpha subunit [Bacteroides clarus YIT 12056] Length = 1265 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 371/1142 (32%), Positives = 591/1142 (51%), Gaps = 127/1142 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGPK 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQDNLKM 85 AC A I +PIIGC++ + + M Sbjct: 64 GEIKDLKKRIAGIESGEIACEDKEAEIAACKAKITEAENKLFKPIIGCEMYVARR---TM 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L GY LI+LVSR + + + R + L++ EGLI Sbjct: 121 DKKEGKPDQSGYHLIVLAKNETGYHNLIKLVSRAWTMGYYMRP-RTDRNELEKY-HEGLI 178 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195 + + G + + + + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 179 VCSACIGGEVPKKIINDQLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQQ 238 Query: 196 -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++++ A + + ++ +N+ F+ EE+ EAHD L+ ++ + R T ++ Sbjct: 239 KANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEWM 298 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM +F+D+PEAL NT+EI + + HAPI+P ++ EK Sbjct: 299 KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358 Query: 299 ECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH--- 333 + D + EE + + K + G E +LA + Y Sbjct: 359 DLFDEFTQDENGKVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKRIYGDPL 418 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L I Sbjct: 419 SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 478 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 479 TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 538 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509 K A++DV R ++P S+ DRL KL+P+ P ++L AIA + A + DP V Sbjct: 539 ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLVR 598 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565 L+ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 599 DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 658 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTL++++++++ + RG+ +D+ I +D TY L T+G FQ E Sbjct: 659 TGLIKMDFLGLKTLSIIKEAVENVRLHRGLALDIDKISINDPATYKLYCDGRTIGTFQFE 718 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+++ LK+ Sbjct: 719 SAGMQKYLRELQPGTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 778 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI+G KNG Sbjct: 779 TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHDAK 838 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + ++ I K Sbjct: 839 VLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSDITTITK 898 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862 + + I+++ P VN + F V + I + L A+KGVG + IME + P+ Sbjct: 899 LMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVQSIMEEREKNGPY 958 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQW 914 + DF RV+ N++ LE L AG D F R Q ++ + +Y Sbjct: 959 TGIFDFVQRVNLNACNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIETLVRYGNR 1018 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E D T E E S R E+ ++G Y S HPLD Y Sbjct: 1019 YQADKAAAVNSLFGGE--NVVDIATPEILPAERWSDLDRLNKERDLVGIYLSAHPLDEYS 1076 Query: 973 PILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + E + G I + +V + ++ ++ G+ G + + E Sbjct: 1077 VVLEHVCNTHMAELEDKTLLVGREITMGGIVTTVRRGISKNGNPYGIAKIEDYSGSAELP 1136 Query: 1031 FF 1032 FF Sbjct: 1137 FF 1138 >gi|238063859|ref|ZP_04608568.1| DNA polymerase III, alpha subunit [Micromonospora sp. ATCC 39149] gi|237885670|gb|EEP74498.1| DNA polymerase III, alpha subunit [Micromonospora sp. ATCC 39149] Length = 1179 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 372/1078 (34%), Positives = 563/1078 (52%), Gaps = 76/1078 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILD-KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 SF HL VH+ YS+L+G + + PA+A+TD N+ A +F ++A AAGI Sbjct: 4 SFAHLHVHTEYSMLDGCGPGSRTSSPRPTGSGMPAVAMTDHGNMHGANDFYKQAMAAGIT 63 Query: 69 PIIGCQLDI---------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 PI+G + + Q + ++ G + + + + G L Sbjct: 64 PILGVEAYVAPESRYHKARVKWGRPEQKSDDVSGNG-----AITHMTMWAANKTGLHNLF 118 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L SR + + R+ + + E EG++ TG SG + A K Sbjct: 119 TLNSRASMEGHYVKWPRMDMELIAE-HAEGIMATTGCPSGAVQTRLRLGQFDEALKVASA 177 Query: 174 FKKLFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++ +FG D ++ L H G D R + ++ +P V TN+S + E EAHDV Sbjct: 178 YQDIFGRDNYFLELMDH-GLDIERRVRDGLTEIGKKLGIPPVVTNDSHYTHEAQAEAHDV 236 Query: 231 LMAVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSD--LPEALENTVEIARRC--SFIL 285 L+ V + ++ +R R Y +K+ +M ++ S E NT+ +A + + + Sbjct: 237 LLCVQTGSNIADPNRFRFEGGGYFIKSAEQMRAVDSSQLWLEGCRNTLLVAEKVDPAGMF 296 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 + H ++PRF E + EE+ R + GL R G + +G+ Q ++EL Sbjct: 297 EFHN-LMPRFPVPEGE----TEESWFRKETFKGLARRFP-GGVPEGHVVQ-----AEYEL 345 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI +M F YFL+VADFI WAK I VGPGRGS AGS+ AYAL ITD+DP+ L+FE Sbjct: 346 GVIIQMGFPSYFLVVADFIGWAKSQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFE 405 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPD DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D R L Sbjct: 406 RFLNPERVSMPDVDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVL 465 Query: 466 QMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLL 512 PY+ DR+ K +P DP HP +A R +DP V +++ Sbjct: 466 GYPYAVGDRITKAMPPAVMGKDIPLSGIFDPKHPRYAEA----GEIRGLYESDPDVKKVI 521 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + ++ +EGL R HAAG+++ P+ + +P+ R + +TQF+ E GL+K D Sbjct: 522 DTAKGIEGLIRQTGVHAAGVIMSAEPIIEHIPLMRRDSDGVIITQFDYPTCESLGLLKMD 581 Query: 573 FLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGL+ LT++ ++ + G +DL + DD Y LL TLG+FQL+ MR Sbjct: 582 FLGLRNLTIIDDAVKNIQLNHGKDLDLLGLDLDDKAAYELLARGDTLGVFQLDGGPMRSL 641 Query: 632 LEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----T 685 L M+PD EDI A+++LYRPGP +D+ Y RKNG ++I IHP ++ L+E T Sbjct: 642 LRLMKPDNFEDISAVLALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLREILAPT 701 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+I+YQEQV + AQ+L+GY+L +AD+LRRAMGKK KE +DK+ F G + G S Sbjct: 702 HGLIVYQEQVQRAAQILAGYTLGQADLLRRAMGKKKKEILDKEFVPFRDGCRERGYSDEA 761 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 ++++L FA Y FNK+H+AAY ++SY TA++K HYP E++AA +T D+ +K+ + Sbjct: 762 IQAVWDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALY 821 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDS 864 + R+ IQ++PP VNT F I + LAAI+ VG IM DK + Sbjct: 822 LSECRRMGIQVLPPDVNTSAGPFTPVGKDIRFGLAAIRNVGANVVASIMRCRQDKGEYAD 881 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ-SLDNIQKYAQWVEKNRTNKH 923 DF ++VD+ N++ +ESL+ AGA D G++R LL D I YA K ++ Sbjct: 882 FYDFLAKVDAVVCNKKTIESLIKAGAFDVMGHTRKGLLAVHADAIDAYADVKRKEAVGQY 941 Query: 924 ENIFAH----EKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + A E S + E + + E+ +LG Y S HPL + +L Sbjct: 942 DLFGAGFGDAEAAGGSTTVMPTIGEAEWDKRDKLAFEREMLGLYVSDHPLFGLEHVLGAA 1001 Query: 979 G---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I E G + LA ++ Q++ T++G T + A E FFP Sbjct: 1002 ADTTIAALSEEGTVPDGAVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1059 >gi|329940921|ref|ZP_08290201.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus M045] gi|329300215|gb|EGG44113.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus M045] Length = 1179 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 363/1069 (33%), Positives = 570/1069 (53%), Gaps = 62/1069 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YS+L+GA L ++ D IA++D NL A +F A AG+ PI Sbjct: 6 FTHLHVHTQYSMLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHSAKKAGVTPI 65 Query: 71 IGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSRM 119 IG + + + + N + G+ P + + + A G L L S Sbjct: 66 IGIEAYVAPESRRNKRKIRWGQ-PHQKRDDVSGSGGYTHKTIWAADAGGLHNLFRLSSDA 124 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Y ++ R+ + + +EGLI TG SG + A K ++ +FG Sbjct: 125 YAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSAADYQDIFG 183 Query: 180 -DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 DR ++ L H G D R RE ++++ +P + TN+S + + AHD L+ + Sbjct: 184 KDRYFLELMDH-GIDIEHRVREG-LLEIGKKLGIPPLVTNDSHYTYAHEASAHDALLCIQ 241 Query: 236 HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA-PI 291 +S DR + +YLK+ EM +I S E NT+ +A + + Sbjct: 242 TGKNLSDPDRFKFDGTGYYLKSADEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFEKRDL 301 Query: 292 LPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P+F DI + E + + G+E R G +D ++++++E++VI Sbjct: 302 MPKF------DIPEGYTEVTWFKEEVRRGMERRFPGGI------PEDRQKQVEYEMDVII 349 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLN Sbjct: 350 QMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLN 409 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY Sbjct: 410 PERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPY 469 Query: 470 SQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLEG 520 + DR+ K +P D + L I D + R+ EA +P V ++++ ++ +EG Sbjct: 470 AMGDRITKAMPADVLGKGIDLNGITDPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVEG 529 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HAAG+++ +++ VP++ + +TQ++ E GL+K DFLGL+ LT Sbjct: 530 LVRQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLT 589 Query: 581 LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ ++ + + +G +DL +P DD T+ LL TLG+FQ + MR L M+PD Sbjct: 590 IMDDAVKMVKSNKGRDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDN 649 Query: 640 IEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQE 693 EDI A+ +LYRPGP +D+ Y RKNG ++I IHP ++ LKE T G+I+YQE Sbjct: 650 FEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHPELEAPLKEVLDVTYGLIVYQE 709 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QV + AQ+++GYSL EAD+LRR MGKK +E+ K F +GA KNG S ++++L Sbjct: 710 QVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAKKNGYSDEAIQALWDVL 769 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 770 VPFAGYAFNKAHSAAYGLVSYWTAFLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMG 829 Query: 814 IQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871 I+++PP+VN +F GD+ I + L+A++ VGT I+ + A + S D+ + Sbjct: 830 IKVLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVDSIIRSRKAKGKYASFPDYLDK 889 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--H 929 V++ N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 890 VEAVVCNKRTTESLIKAGAFDSMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMG 949 Query: 930 EKGTFSDKITLE-KFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 E T L+ +FS + + + E+ +LG Y S HPL + +L G + Sbjct: 950 EGDTSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQL 1009 Query: 987 VATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + ++ Q+K T++G+ T + A E FFP Sbjct: 1010 TGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058 >gi|119026148|ref|YP_909993.1| DNA polymerase III subunit alpha [Bifidobacterium adolescentis ATCC 15703] gi|118765732|dbj|BAF39911.1| DNA polymerase III alpha subunit [Bifidobacterium adolescentis ATCC 15703] Length = 1196 Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust. Identities = 355/1085 (32%), Positives = 571/1085 (52%), Gaps = 70/1085 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +FV L H+ YSLL+GA + +++ + PA+ ITD N+ A E A Sbjct: 1 MATSANFVQLHNHTHYSLLDGASKIPDLVKRAKELGMPAVGITDHGNMHGAYEMWSAAVN 60 Query: 65 AGIQPIIGCQ----------------LDIDMQDNLKMTNQGKTP-----FPTVPSIVLLV 103 AGI+PIIG + D + +L ++ + P + + + Sbjct: 61 AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPLHRRRNPDDVSGGGVITHLTMWA 120 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 EG L++ + L + + R+ L + ++G+I +G SG I Sbjct: 121 ENDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLRLGQ 179 Query: 164 SQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221 A + F+ +FG D Y+ H ++ ++ +A PL+ATN+S + Sbjct: 180 FDDALRAAGEFQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYTR 239 Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 ED A D ++ + + + + R + +Y+K+ EM +F DLPEA +NT+EIA R Sbjct: 240 AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYIKSAEEMRELFKDLPEACDNTLEIAER 299 Query: 281 CSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 C+ + H +P+F +C + E L+ K GLE R G + + Sbjct: 300 CNVMFDDHEDGAFMPQF---DCPEGWDETSLFLK-KVEEGLERRY------NGKPSLEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 ++ D+E VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DPL Sbjct: 350 RQADYECGVICQMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 L+FERFLNP+R+S+PD D+DF D R V+ YV KYG ++VAQ + +G+++ K AL Sbjct: 410 EHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQAL 469 Query: 459 RDVGRALQMPYSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSV 508 +D R + +S D++ K +P + P H + S + A+ FRE +DP Sbjct: 470 KDSARIMGYDFSVGDKITKALPPAQTGGKDIPLHDIFDPSAKRYAEAREFRELYDSDPDT 529 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAG 567 R+ + + +EGL R HA ++G P++ P+ R+D V T E G Sbjct: 530 KRITDEAMGIEGLIRQTGVHACATIMGSEPITNTSPLLE--RTDGTVTTTLEYHTCETLG 587 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGL LT+++ +L+ + G ++D + IP DD TY LL+ TLG+FQL+S Sbjct: 588 LVKMDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRPTYDLLSRGDTLGVFQLDSD 647 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM-- 681 GMR L+ ++P+ DI AL++LYRPGP +D+ Y RKNG +KI IHP + +P+ Sbjct: 648 GMRSLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKE 707 Query: 682 -LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 L ET G+I+YQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G Sbjct: 708 VLDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHG 767 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 S+ A ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N + Sbjct: 768 YSEEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKD 827 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM--EASA 858 K + +AR+ IQ++ P VN ++ + + + L AI+ VG I+ + Sbjct: 828 KTALYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKNAVDAIIAERENG 887 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 + + DF RV + LNRR++ESL+ AGA D +R L + +++ Sbjct: 888 HGKYVNFTDFIKRVPLEALNRRLVESLIKAGAFDSIDPNRRALFTIHETAINSVVGLKRK 947 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVE-------NSSVRFENEQRVLGFYFSGHPLDVY 971 + ++FA + + + V+ + + E+ +LG Y S HPL Sbjct: 948 QAEGQFDLFADLDDSKENDSAMGDAMVQVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGM 1007 Query: 972 KPI---LRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 + I LR+M I + ++ G + +A ++ + ++ ++KG+ VT + Sbjct: 1008 QSILVSLREMSIAHLIDRAGSMPDGQQVTIAGLITNVDRRVSKKGNPWAIVTVEDLESSI 1067 Query: 1028 EANFF 1032 + FF Sbjct: 1068 QCMFF 1072 >gi|281421262|ref|ZP_06252261.1| DNA polymerase III, alpha subunit [Prevotella copri DSM 18205] gi|281404797|gb|EFB35477.1| DNA polymerase III, alpha subunit [Prevotella copri DSM 18205] Length = 1236 Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust. Identities = 378/1105 (34%), Positives = 568/1105 (51%), Gaps = 102/1105 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------Q 60 FVHL VH+ YS+L+G + +++DK D +A+TD +F E + + Sbjct: 4 FVHLHVHTQYSILDGQSKIPHLVDKAIKDGMKGMAVTDHGVMFGIKELTDYCGKINKDRK 63 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 K +PIIGC++ + + K + + +++L GY+ LI+LVS + Sbjct: 64 KEGLEPFKPIIGCEMYVARR--TKADREKDKGDMSGYHLIVLAKNYNGYKNLIKLVSNSW 121 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + D R + L++ E LI+ + +G + + A + + LFGD Sbjct: 122 V-DGYYMRPRTDRADLEKY-HEDLIVCSACIAGEVPSKILHGDLEGAREACQWYHNLFGD 179 Query: 181 RLYVNLQRHRGYD-----RYRES---------QVVQLAYTHELPLVATNNSLFLSEEDYE 226 Y+ LQRH+ D RE+ +++++A + LV TN+ F +E E Sbjct: 180 DYYLELQRHKVPDDPSLLANREAYELQQRANKELIKMAREFNIKLVCTNDCHFEDKETAE 239 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ +A + +R R + + K R EM +FSD+PEAL NT+E+ + Sbjct: 240 AHDHLLCIATGKDLDDPNRMRYSKQEWFKTRQEMNEVFSDIPEALSNTLEVLDKVEIYSI 299 Query: 287 VHAPILPRFIEKEC-------------DDIQKE-------------EENE---------- 310 H PI+P F E +D+ KE EE + Sbjct: 300 DHGPIMPFFPIPESFGTEEQLRQKVSEEDLYKEFTSDENGKNPLPPEEGQKVIDRLGGYD 359 Query: 311 --LRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R K A LA K Y +D + ++FEL+V+ M F GYFLIV+DFI+ Sbjct: 360 KIYRIKFEAEYLRHLAYEGAKKLYGDPLPEDVDEHVNFELHVMKTMGFPGYFLIVSDFIR 419 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF Sbjct: 420 AAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 479 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--- 481 D R +V+R+V +KYGHE A IIT+GS+ K +++DV R ++P + + LCK IP+ Sbjct: 480 DGRGKVLRWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLDKANALCKAIPDRLP 539 Query: 482 DPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 D A AI REA + DP ++ ++ LEG R HA G +I P+S Sbjct: 540 DGAKMNLTNAIKYTPELREAEFSNDPRESNTIKYAKMLEGTIRGTGIHACGFIICRDPIS 599 Query: 541 QLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 VP+ D P VTQ++ IE GLIK DFLGLKTL+ ++++ + Q G Sbjct: 600 NWVPVSTADDPDFPGLKTAVTQYDGHVIETTGLIKMDFLGLKTLSEMKEACKVIKQTTGD 659 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VDL IP DD TY L T+G FQ ES GM++ L ++P ED+IA+ +LYRPGP Sbjct: 660 VVDLDTIPIDDELTYQLYQRGQTIGTFQFESPGMQKYLRELKPTVFEDLIAMNALYRPGP 719 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RKNGK+ I P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D LR Sbjct: 720 MDYIPDFIARKNGKQAITYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRGESDALR 779 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK K +D K +FI +NG + I+ KFA Y FNKSHA Y+ ++Y Sbjct: 780 KAMGKKKKAIVDAMKPKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHATCYSWVAY 839 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833 QTA++K HYP E++AA MT + +I K ++ + I+ + P VN F V ++ Sbjct: 840 QTAYLKAHYPAEYMAALMTRRFAQITEITKLMEECQSMGIKTLGPDVNESYRVFGVNEHG 899 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + L+AIKG+G A I+ E + P+ S+ DF RVD +NR+ E+L +G D Sbjct: 900 EIRFGLSAIKGMGAPAADAIVAERLKNGPYKSIFDFAERVDYSSVNRKAFETLALSGGFD 959 Query: 893 CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF-S 944 FG R Q LD + +Y Q ++ + ++F GT + +I Sbjct: 960 SFGIRREQFFGKNNKGETFLDTLVRYGQLFQQEQHEAANSLFG---GTEAIEIATPPIPD 1016 Query: 945 VENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIK-----GYEESVATIRGNNIRL 997 E+ S R E+ ++G Y S HPLD Y IL + G ++ +A + ++ L Sbjct: 1017 AESWSTIERLNRERELVGIYLSAHPLDEYSIILNSLCNTHCSELGDKQELA--KKEDVVL 1074 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSE 1022 ++ + K T+ G G+VT + Sbjct: 1075 GGIITGVKSKFTKTGKPCGFVTLED 1099 >gi|261337490|ref|ZP_05965374.1| DNA polymerase III, alpha subunit [Bifidobacterium gallicum DSM 20093] gi|270277885|gb|EFA23739.1| DNA polymerase III, alpha subunit [Bifidobacterium gallicum DSM 20093] Length = 1185 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 357/1086 (32%), Positives = 583/1086 (53%), Gaps = 78/1086 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ FVHL H+ YSLL+GA + N++ + A+ ITD N+ A E +A A Sbjct: 1 MTQTADFVHLHNHTHYSLLDGASKIPNLVRRTKELGMNAVGITDHGNMHGAYELWSEAVA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQR 111 G++PI+G ++ ++ + + T + + L EG Sbjct: 61 NGVKPILG--IEAYATPETSRFDKSRVHWGTEEQRRDDVSGGGLITHLTLWAENDEGLVN 118 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++ S L + + R+ LQ +G+I +G SG + A + Sbjct: 119 LLKASSVANLEGRVMRYPRMDKEVLQTY-AKGIICGSGCPSGIVQTRLRLGQFDEALRAA 177 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + +FG + Y+ L H +R + ++ +A + PL+ATN+S ++ ED A D Sbjct: 178 GELQDIFGKENFYIELMDHNLSIERKVTNDLLTIAKKLDAPLLATNDSHYVMPEDASAQD 237 Query: 230 VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 ++ + + + + R + + +YL+ EM +F +LPEA +NT+E+A RC+ I H Sbjct: 238 AMLCINSGSTLDEPGRFKFEGEGYYLRPAEEMRELFKELPEACDNTLEVAERCNVIFDDH 297 Query: 289 --APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 +P F +C + E LR K GLE R G ++ ++ D+E Sbjct: 298 EDGAFMPEF---DCPEGWDETSLFLR-KVEEGLEKRY------DGNPPEEVLKQADYECG 347 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 +I +M+F GYFL+VAD+I WAK++++ VGPGRGS AG++ AYA+ ITD+DPL+ L+FER Sbjct: 348 IICQMQFCGYFLVVADYINWAKEHDVMVGPGRGSAAGAMVAYAMGITDLDPLQHGLIFER 407 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+S+PD D+DF + R V+ YV +KYGH++VAQ + +G+++ K AL+D R + Sbjct: 408 FLNPERVSLPDIDVDFDPEGRMRVLDYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMG 467 Query: 467 MPYSQVDRLCKLIPNDPAHP----VSLQAI--ADDSRFREARL------ADPSVDRLLEI 514 +S +R+ K +P PA ++++ I D R+ EAR +D V R+ + Sbjct: 468 YEFSMGERVTKALP--PAQTGGKDIAIRDIFNPDAKRYAEAREYRELYDSDADVKRITDQ 525 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDF 573 + +EGL R HA ++G +P++ P+ R+D V T F E GL+K DF Sbjct: 526 AMGIEGLIRQTGVHACATIMGSKPITDTSPLLE--RTDGTVTTTFEYHTCETLGLVKMDF 583 Query: 574 LGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL LT++ +L + G + +D + IP DD T+ LL++ TLG+FQL+S GMR L Sbjct: 584 LGLSNLTVIHDTLKNIENNGKESIDYTKIPLDDKATFELLSSGETLGVFQLDSDGMRSLL 643 Query: 633 EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQ 686 + ++PD DI AL++LYRPGP +D+ Y RKNG+++I IHP ++P+LKET Sbjct: 644 KMLRPDNFSDISALIALYRPGPMGMDSHTNYAKRKNGQQQIDPIHPEVAEALEPILKETY 703 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQ+ A++L+GYSL +ADVLRRAMGKK E + K+K F G +G S+ A Sbjct: 704 GLIVYQEQIQFAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFQGMKDHGYSEEAA 763 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 ++++ FA Y FNK+H+AAY +ISY TA++K HYPVEF+AA + +N +K + Sbjct: 764 QAVWDVFLPFAGYAFNKAHSAAYGLISYWTAYLKAHYPVEFMAALLQNAKNNKDKTALYL 823 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM--EASADKPFDS 864 +AR+ I+++ P VN ++ + + + L A++ VG + + I+ + + + Sbjct: 824 GEARRMGIKVLSPDVNESLYEYSAVGDVVRFGLGAVRNVGESAVQDIIAERNNGKGKYVN 883 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD-NIQKYAQWVEKNRTNKH 923 D+ RV LNRR++ESL+ AGA D +R L Q + I Y +++ + Sbjct: 884 FMDYIQRVPLPALNRRLVESLIKAGAFDSIEPNRRALFQVHEAAIDSYVN-IKRKQAEGQ 942 Query: 924 ENIFAHEKG-----TFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI--- 974 ++FA G T D +I + + + E+ +LG Y S HPL + + Sbjct: 943 FDLFADLDGDEKSDTMGDARIDIPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLAG 1002 Query: 975 LRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP---------A 1024 LR+M I + + + +A +V ++K +++G+ +T + Sbjct: 1003 LREMSIARLIDRAPQMEDRTQVTIAGLVTHVERKVSKRGNAWALITVEDMESSIQCMLFG 1062 Query: 1025 KEYEAN 1030 K YEAN Sbjct: 1063 KVYEAN 1068 >gi|255693699|ref|ZP_05417374.1| putative DNA polymerase III alpha subunit [Bacteroides finegoldii DSM 17565] gi|260620516|gb|EEX43387.1| putative DNA polymerase III alpha subunit [Bacteroides finegoldii DSM 17565] Length = 1268 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 377/1149 (32%), Positives = 595/1149 (51%), Gaps = 140/1149 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ------KACAAGIQ-----------------------------PIIGCQL-----DIDMQ 80 K AGI+ PIIGC++ +D++ Sbjct: 64 GEVKDLKKRIAGIEAGTIECEDKEAEIADCKAKIVEAESKLFKPIIGCEMYVARRTMDLR 123 Query: 81 DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140 + K+ G +++L +GY LI+LVS + + R S L++ Sbjct: 124 EG-KLDQSGY-------HLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY- 173 Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDR 194 EGLI+ + G I + + AE+ + +K LFGD Y+ +QRH+ ++ Sbjct: 174 HEGLIVCSACLGGEIPKRITNDQFAEAEEAIQWYKNLFGDDFYLEMQRHKATVPRANHEC 233 Query: 195 YR-----ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 Y +++ A + + L+ TN+ F+ EE+ EAHD L+ ++ + R T Sbjct: 234 YPMQVKVNKYLMEYAQKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYT 293 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP---------------- 293 ++K R EM +F+D+PEAL NT+EI + + HAPI+P Sbjct: 294 KQEWMKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRA 353 Query: 294 RFIEKECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKG 331 +F EK+ D + EE+ + + K + G + +LA + Sbjct: 354 KFTEKDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRI 413 Query: 332 YH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTA 387 Y +++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS A Sbjct: 414 YGEPLSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVA 473 Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 Y L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA II Sbjct: 474 YCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHII 533 Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA- 504 T+G++ K A++DV R ++P S+ DRL KL+P+ P ++L AIA + A + Sbjct: 534 TYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASS 593 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNM 560 DP V L+ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ Sbjct: 594 DPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEG 653 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLG 619 IE GLIK DFLGLKTL++++++++ + R ++VD+ I +D TY L + T+G Sbjct: 654 SVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSRAIEVDVDQIDINDPATYKLYSDGRTIG 713 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679 FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ Sbjct: 714 TFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVME 773 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KN Sbjct: 774 KYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKN 833 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ Sbjct: 834 GHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNI 893 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-S 857 I K + + IQ + P VN + F V D I + L A+KGVG + IME Sbjct: 894 TDITKLMDECKAMGIQTLGPDVNESNLKFTVNRDGNIRFGLGAVKGVGEAAVQSIMEERE 953 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909 + PF + DF RV+ N++ +E L AG D F R Q L+ + Sbjct: 954 KNGPFTGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLM 1013 Query: 910 KYAQWVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 +Y + ++ ++F E T +E++S + R E+ ++G Y S Sbjct: 1014 RYGNRYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSA 1070 Query: 966 HPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD + +L + E A + G I + +V S ++ ++ G+ G + Sbjct: 1071 HPLDEFSIVLEHVCNTRMADLEDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDY 1130 Query: 1024 AKEYEANFF 1032 + E F+ Sbjct: 1131 SGSTEIPFW 1139 >gi|255523410|ref|ZP_05390379.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] gi|255512868|gb|EET89139.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] Length = 959 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 316/777 (40%), Positives = 470/777 (60%), Gaps = 42/777 (5%) Query: 232 MAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 M + VV++++R R D YLK+ EM IFS +PEALENTV+IA +C+F + H Sbjct: 1 MCIQTGKVVNEENRMRYPSDEFYLKSPEEMYKIFSRVPEALENTVKIAEQCNFDYEFHKS 60 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGL-----------EVRLAQGAIAK----GYHAQ 335 LP+F E E LR+ GL EV + ++ + A+ Sbjct: 61 KLPKFPLPE----HVEPYEYLRDLCYKGLIQRYKEFEQLKEVSFSIESVNELADSNDEAK 116 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 +RL++EL++I +M + YFLIV DFI ++ +N I GPGRGS AGS+ AY L IT I Sbjct: 117 KLVERLEYELSIIKQMGYVDYFLIVWDFINFSVENGIMTGPGRGSAAGSIIAYTLGITKI 176 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DP+++SLLFERFLNP+R+SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+ Sbjct: 177 DPIKYSLLFERFLNPERVSMPDIDSDFCYERRGEVIDYVVRKYGENSVSQIITFGTMAAR 236 Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEI 514 A +RDVGRA+ PY++VDR+ K+IP P +++ +A+ +S EA + L++I Sbjct: 237 ACIRDVGRAMNYPYAEVDRIAKMIPAAPGKAITIDKALELNSELEEAYENEERTKALIDI 296 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEGL RH STHAAG+VI +PL VPM ++ D VTQF M +E+ GL+K DFL Sbjct: 297 ARALEGLPRHTSTHAAGVVIASQPLVNYVPMQKN--EDNIVTQFTMGTLEELGLLKMDFL 354 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+TLT+L+ ++ + +G+ +DL I +DD Y ++ T+GIFQLES+GM ++ Sbjct: 355 GLRTLTVLRDAVSMVKDNKGINIDLDKIDYDDKNVYKMIGEGKTVGIFQLESAGMTSFMK 414 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 ++PD +EDIIA +SLYRPGP+ I Y + KN E I + P ++ +L T G ++YQE Sbjct: 415 ELRPDSLEDIIAGISLYRPGPMAEIPKYISNKNNPEGIEYLTPELESILGVTYGCMVYQE 474 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI------------SGASKNGI 741 QVM+I + L+GYS+ +D++RRAM KK M++++ FI G KNGI Sbjct: 475 QVMEIVRKLAGYSMGRSDLVRRAMSKKKHHVMEEERHNFIYGIVDEEGVEKVPGCIKNGI 534 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S+ A IF+ + FA Y FNKSHAA+YAV+++QTA+M +YP E++AA + + EK Sbjct: 535 SEDAADKIFDSMMDFASYAFNKSHAASYAVVAFQTAYMIHYYPTEYIAAMLNSVKGDNEK 594 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861 + + + A + IQ++ P++N F V +++I + L+AIK VG I+++ K Sbjct: 595 VAYYTRFADEIGIQVLTPNINESYAKFTVKEDKIRFGLSAIKNVGENVIDSIVKSRERKG 654 Query: 862 -FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 F +L DFC+++D +N+RV+ESL+ AGA DCF R +LL + + K Sbjct: 655 VFSNLVDFCNKIDVSCINKRVVESLIKAGAFDCFKVYRSKLLAVYEKVLDGVSNSRKKNI 714 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPIL 975 + ++F K ++ +E ++ R E+ + G Y SGHPL+ Y+ L Sbjct: 715 DGQLSLFTDFKKI---EVKIEYPEIKEFEKRHILAMEKEMTGLYLSGHPLEEYEKSL 768 >gi|212715528|ref|ZP_03323656.1| hypothetical protein BIFCAT_00426 [Bifidobacterium catenulatum DSM 16992] gi|212660895|gb|EEB21470.1| hypothetical protein BIFCAT_00426 [Bifidobacterium catenulatum DSM 16992] Length = 1196 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 355/1087 (32%), Positives = 570/1087 (52%), Gaps = 74/1087 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +FV L H+ YSLL+GA + +++ + PA+ ITD N+ A E A Sbjct: 1 MATSGNFVQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVK 60 Query: 65 AGIQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 G++PIIG + DID Q + N + + + + Sbjct: 61 EGVKPIIGIEAYVTPETARQDQTRVSWDTNWNPDIDPQHRRRNPND-VSGGGLITHLTMW 119 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 T EG L++ + L + + R+ L + ++G+I +G SG I Sbjct: 120 AETDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLLLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 A + + +FG D Y+ H ++ ++ +A PL+ATN+S ++ Sbjct: 179 QFDEALRAAGELQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 ED + D ++ + + + + R + +YLK+ EM +F D+PEA +NT+EIA Sbjct: 239 RAEDAGSQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDIPEACDNTLEIAE 298 Query: 280 RCSFILQVH--APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337 RC+ + H +P+F +C + E LR K GLE R G+ + Sbjct: 299 RCNVMFDDHEDGAFMPQF---DCPEGWDETSLFLR-KVEEGLEQRY------DGHPPIEV 348 Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397 ++ D+E VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP Sbjct: 349 LKQADYECGVICQMQFCGYFLVVADYINWAKSHGVMVGPGRGSAAGAMVAYAMGITELDP 408 Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457 ++ L+FERFLNP+R+S+PD D+DF D R V+ YV +KYG ++VAQ + +G+++ K A Sbjct: 409 IKHGLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGDKYGRDKVAQCVIYGTIKTKQA 468 Query: 458 LRDVGRALQMPYSQVDRLCKLIP-----------NDPAHPVSLQAIADDSRFREARLADP 506 L+D R + +S +R+ K +P D P S + A+ FRE +DP Sbjct: 469 LKDSARIMGYEFSMGERITKALPPAQTGGKDIPLRDIFEPTS-KRYAEAREFRELYDSDP 527 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEK 565 R+ + + +EGL R HA ++G P+S P+ R+D V T E Sbjct: 528 DAKRVTDEAMGIEGLIRQTGVHACATIMGSEPISNTSPLLE--RTDGTVTTTLEYHTCET 585 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL LT+++ +L+ + G ++D + IP DD TY LL+ TLG+FQL+ Sbjct: 586 LGLVKMDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRATYDLLSRGDTLGVFQLD 645 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLI-DPM 681 S GMR L+ ++P+ DI AL++LYRPGP +D+ Y RKNG +KI IHP + +P+ Sbjct: 646 SDGMRSLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPL 705 Query: 682 ---LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 L ET G+I+YQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G + Sbjct: 706 KEVLDETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKE 765 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 +G S+ A ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N Sbjct: 766 HGYSQEAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTN 825 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-- 856 +K + +AR+ IQ++ P VN ++ + + + L AI+ VG I++ Sbjct: 826 KDKTALYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKAAVDAIVKERD 885 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + + + DF RV + LNRR++ESL+ AGA D +R L + ++ Sbjct: 886 GSHGRYVNFPDFIKRVPMEALNRRLVESLIKAGAFDSIDPNRRALFTIHEAAINSVVGLK 945 Query: 917 KNRTNKHENIFA-------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + + ++FA + G +++ + + E+ +LG Y S HPL Sbjct: 946 RKQAEGQFDLFADLEDSGEDDAGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLS 1005 Query: 970 VYKPI---LRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 + I L +M I + A + G + +A ++ + ++ ++KG+ VT + Sbjct: 1006 GMQSILVSLSEMSIAHLIDRAANMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLES 1065 Query: 1026 EYEANFF 1032 + FF Sbjct: 1066 SIQCMFF 1072 >gi|15805534|ref|NP_294230.1| DNA polymerase III subunit alpha [Deinococcus radiodurans R1] gi|14194695|sp|Q9RX08|DPO3A_DEIRA RecName: Full=DNA polymerase III subunit alpha gi|6458195|gb|AAF10085.1|AE001909_7 DNA polymerase III, alpha subunit [Deinococcus radiodurans R1] Length = 1335 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 312/731 (42%), Positives = 445/731 (60%), Gaps = 60/731 (8%) Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +R ++EL+VI M F YFLIVAD+I WAK ++I VGPGRGSGAGS+ AYA+ IT++DPL Sbjct: 472 RRAEYELSVINNMGFPDYFLIVADYINWAKDHDISVGPGRGSGAGSLVAYAIRITNLDPL 531 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 F LLFERFLNPDR+SMPDFDIDF RR EVI YVQ KYG ++VAQI TFG++ +KA L Sbjct: 532 EFELLFERFLNPDRISMPDFDIDFNDARRTEVIGYVQEKYGTDKVAQIATFGTMASKACL 591 Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL------ 512 +DV R + + Y++VD++ KLIP SL+ +AR A P + ++L Sbjct: 592 KDVARVMGLEYAKVDKVSKLIPIKFGKSYSLE---------QAREAVPDIQQMLAEDAQL 642 Query: 513 ----EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 E +QKLEGL RHAS HAAG+VIG L+ LVP+ RD + V Q++MK +E GL Sbjct: 643 LEAYEFAQKLEGLTRHASVHAAGVVIGREELTNLVPVMRDTSGEGQVCQYDMKSVEDIGL 702 Query: 569 IKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQL 623 IK DFLGL+TL+ L ++ L + G D IPFDD +TY L++ T G+FQL Sbjct: 703 IKMDFLGLRTLSFLDEAKRILRESGTDFEEKYGDFDHIPFDDEKTYELMSRGDTKGVFQL 762 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI-------VSIHP 676 E +G+ A ++P + DIIAL +LYRPGP++NI Y R +G E++ + Sbjct: 763 EGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGIEEVDYDKDGFPNSKQ 822 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736 ++ +L+ET G+ +YQEQ+MQIA ++GYSL AD+LRRAMGKK EEM +Q++ F+ GA Sbjct: 823 WLEKILQETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDAEEMKRQRQLFVVGA 882 Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796 + G+ + +F++L FA+YGFNKSH+AAY VI+YQTAW+K +YPV+F+AA +T+E Sbjct: 883 KEKGVPEDEGNKLFDMLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVQFMAALLTVER 942 Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856 + +K+ ++ DAR+ ++ ++PP +N DF V I + L AIKG+G + I+E Sbjct: 943 RDSDKVAEYVSDARKMDLHVLPPDINRSSSDFAVAGEEILFGLYAIKGLGESAVLRILEE 1002 Query: 857 SADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL-DNIQKYAQW 914 F SL DFCSR+ +K NR+ LESL+ +GA D FG R QL++SL D ++ A Sbjct: 1003 REKAGAFKSLADFCSRLGNKVCNRKALESLIKSGAFDAFG-ERHQLIESLEDALEDAAGT 1061 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVE---NSSV-------RFENEQRVLGFYFS 964 E N A + S +E+ E SS+ R E+ LG Y S Sbjct: 1062 AEIN---------ARAQSGMSMMFGMEEVKKERPLRSSIAPYSDLERLAIEKEALGLYIS 1112 Query: 965 GHPLDVYKPILRKMGIKGYE-------ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 GHPL+ ++ + + + ++VA + LA M+ +K T+ G + Sbjct: 1113 GHPLEQHEGLREAASCRVSDLDAWFALQNVAPGKRQKAVLAGMIEGVVKKPTKSGGMMAR 1172 Query: 1018 VTFSEPAKEYE 1028 ++ + + E Sbjct: 1173 FILADESGQME 1183 Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 143/306 (46%), Gaps = 32/306 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNIL----DKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 F HL H+ YSLL+GA L ++L + Q PA+A+TD N+ A+ F A Sbjct: 24 FAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGQTPALAMTDHGNMHGAVHFYNYAMGME 83 Query: 67 IQPIIGCQLDI-----DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 ++PIIG + + +D + + K F + LL EGYQ L L SR Y Sbjct: 84 VKPIIGYEAYVVPGFGTRRDRSRAQDGEKGIF----HLTLLARDFEGYQNLCRLSSRGYT 139 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + RI LQE +G+I +G + + A RLL +++LFGD Sbjct: 140 -EGYYYKPRIDHELLQE-HHKGIIAFSGCLGSEVQQLLMQGREDDARARLLWYRELFGDN 197 Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 ++ +Q H G +++ + A+ EL +VATN+ ++ + D AH+ L+A+ Sbjct: 198 YFIEIQDH-GLPEQKKNNPILKAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKAT 256 Query: 240 VSQKDRPRVTPDH-YLKNRSEM-----VSIFSDLPEALENTVEIARRCSFIL------QV 287 ++ ++R + D Y+KN EM VS + + P +NT IA C+ L Q Sbjct: 257 LADENRFKFPCDEFYVKNLEEMQRALPVSEWGEEP--FDNTAHIAELCNVELPVGKKRQY 314 Query: 288 HAPILP 293 P LP Sbjct: 315 QMPQLP 320 >gi|301161727|emb|CBW21267.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis 638R] Length = 1294 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 366/1141 (32%), Positives = 592/1141 (51%), Gaps = 126/1141 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F+ EF+ Sbjct: 34 FVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGPK 93 Query: 63 -----------------------------CAAGI--------QPIIGCQLDIDMQDNLKM 85 C A I +PIIGC++ + + M Sbjct: 94 GEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVARR---TM 150 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVSR + + R + L++ EGLI Sbjct: 151 DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 208 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR--- 196 + + G + + AE+ + +K LFGD Y+ +QRH+ ++ Y Sbjct: 209 ICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQV 268 Query: 197 --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++ + + + L+ TN+ F++EE EAHD L+ ++ + +R T ++ Sbjct: 269 NVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEWM 328 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM +F+D+PEAL NT+EI + + HAPI+P ++ EK Sbjct: 329 KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 388 Query: 299 ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAI-------AKGYHAQ-- 335 + D + EE + + K + G + ++L + AK ++ Sbjct: 389 DLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDPL 448 Query: 336 --DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 + ++RL FEL+++ M F GYFLIV DFI + + +GPGRGS AGS AY L IT Sbjct: 449 SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQIT 508 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 509 KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTMA 568 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSVDR 510 K A++DV R ++P ++ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 569 TKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVRD 628 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 629 TMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 688 Query: 567 GLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GLIK DFLGLKTL++++++++ + +G+++D+ I +D TY L + T+G FQ ES Sbjct: 689 GLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTIGTFQFES 748 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 +GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK+T Sbjct: 749 AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 808 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG + Sbjct: 809 YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 868 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 869 LEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 928 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFD 863 + + +Q + P VN + F V N I + L A+KGVG + IME + PF Sbjct: 929 MDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEERKENGPFK 988 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWV 915 + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 989 GIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETLMRYGNRY 1048 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKP 973 + ++ ++F + D T E E N R E+ ++G Y S HPLD Y Sbjct: 1049 QADKAAAVNSLFGGD--NVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPLDEYAI 1106 Query: 974 ILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +L + E + + G I + +V S ++ ++ G+ G + + E F Sbjct: 1107 VLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEIPF 1166 Query: 1032 F 1032 F Sbjct: 1167 F 1167 >gi|239931832|ref|ZP_04688785.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672] gi|291440200|ref|ZP_06579590.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672] gi|291343095|gb|EFE70051.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672] Length = 1179 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 365/1079 (33%), Positives = 568/1079 (52%), Gaps = 78/1079 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAQKAGVT 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY-QRLIELVSRMYLLDQGK- 126 PIIG + + + N+ K + VS + GY + + V+R L + + Sbjct: 64 PIIGIEAYVAPESR---RNKRKILWGQPHQKRDDVSGSGGYTHKTMWAVNRTGLHNLFRL 120 Query: 127 QSVRICLSWLQEI----------GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S WLQ+ +EG++ TG SG + A K ++ Sbjct: 121 SSDAYAEGWLQKWPRMDKETIAQWSEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQD 180 Query: 177 LFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +FG DR ++ L H G D R R+ ++++ +P + TN+S + + AHD L+ Sbjct: 181 IFGKDRYFLELMDH-GIDIEHRVRDG-LLEIGKKLGIPPLVTNDSHYTYAHEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA 289 + +S DR + +YLK+ EM +I S E +NT IA Sbjct: 239 CIQTGKNLSDPDRFKFDGTGYYLKSTDEMYAIDSSDAWQEGCDNTRLIAEMVDTTGMFEK 298 Query: 290 -PILPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 ++P+F DI + E + R + + G+ R G D +++++E++ Sbjct: 299 RDLMPKF------DIPEGYTEVSWFREETMRGMHRRFPDGI------PDDRMKQVEYEMD 346 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 I M F GYFL+VADFI WAKK I VGPGRGS AGS+ AYAL ITD+DP+ L+FER Sbjct: 347 TIISMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFER 406 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G+++AK A++D R L Sbjct: 407 FLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLG 466 Query: 467 MPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQK 517 PY+ DR+ K +P D + L I D S R+ EA +P V ++++ ++ Sbjct: 467 YPYAMGDRITKAMPADVLGKGIPLSGITDPSHPRYSEAGEVRSMYENEPDVKKVIDTARG 526 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EGL R HAAG+++ +++ VP++ + +TQ++ E GL+K DFLGL+ Sbjct: 527 VEGLVRQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLR 586 Query: 578 TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ ++ + A +G+ +DL +P DD T+ LL TLG+FQ + MR L M+ Sbjct: 587 NLTIMDDAVKMVKANKGIDIDLLSLPLDDPTTFDLLQRGDTLGVFQFDGGPMRSLLRLMK 646 Query: 637 PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690 PD EDI A+ +LYRPGP +++ Y RKNG+++I IHP ++ LKE T G+I+ Sbjct: 647 PDNFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLDVTYGLIV 706 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQV + AQ+++GYSL EAD+LRR MGKK EE++K F +GA KNG S ++ Sbjct: 707 YQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELEKNFVIFQAGARKNGYSDEAIQALW 766 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T D+ +K + + R Sbjct: 767 DVLVPFAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECR 826 Query: 811 QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868 + I+++PP+VN +F GD+ I + L+A++ VGT I++ A + S D+ Sbjct: 827 RMGIRVLPPNVNESEANFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYTSFPDY 886 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +VD+ N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 887 LDKVDAVVCNKRTTESLIKAGAFDSMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFG 946 Query: 929 HEKG------------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 TF+D + + E+ +LG Y S HPL + +L Sbjct: 947 GMGEEESGEPGFGLDVTFTD-------DEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLS 999 Query: 977 KMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + G+ + + ++ Q+K T++G+ T + A E FFP Sbjct: 1000 DKADAGISQLTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|253563964|ref|ZP_04841421.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_2_5] gi|265765339|ref|ZP_06093614.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_16] gi|251947740|gb|EES88022.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_2_5] gi|263254723|gb|EEZ26157.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_16] Length = 1273 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 366/1141 (32%), Positives = 592/1141 (51%), Gaps = 126/1141 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F+ EF+ Sbjct: 13 FVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGPK 72 Query: 63 -----------------------------CAAGI--------QPIIGCQLDIDMQDNLKM 85 C A I +PIIGC++ + + M Sbjct: 73 GEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVARR---TM 129 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVSR + + R + L++ EGLI Sbjct: 130 DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 187 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR--- 196 + + G + + AE+ + +K LFGD Y+ +QRH+ ++ Y Sbjct: 188 ICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQV 247 Query: 197 --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++ + + + L+ TN+ F++EE EAHD L+ ++ + +R T ++ Sbjct: 248 NVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEWM 307 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM +F+D+PEAL NT+EI + + HAPI+P ++ EK Sbjct: 308 KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 367 Query: 299 ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAI-------AKGYHAQ-- 335 + D + EE + + K + G + ++L + AK ++ Sbjct: 368 DLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDPL 427 Query: 336 --DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 + ++RL FEL+++ M F GYFLIV DFI + + +GPGRGS AGS AY L IT Sbjct: 428 SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQIT 487 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 488 KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTMA 547 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSVDR 510 K A++DV R ++P ++ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 548 TKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVRD 607 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 608 TMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 667 Query: 567 GLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GLIK DFLGLKTL++++++++ + +G+++D+ I +D TY L + T+G FQ ES Sbjct: 668 GLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTIGTFQFES 727 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 +GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK+T Sbjct: 728 AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 787 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG + Sbjct: 788 YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 847 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 848 LEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 907 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFD 863 + + +Q + P VN + F V N I + L A+KGVG + IME + PF Sbjct: 908 MDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEERKENGPFK 967 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWV 915 + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 968 GIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETLMRYGNRY 1027 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKP 973 + ++ ++F + D T E E N R E+ ++G Y S HPLD Y Sbjct: 1028 QADKAAAVNSLFGGD--NVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPLDEYAI 1085 Query: 974 ILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +L + E + + G I + +V S ++ ++ G+ G + + E F Sbjct: 1086 VLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEIPF 1145 Query: 1032 F 1032 F Sbjct: 1146 F 1146 >gi|291457517|ref|ZP_06596907.1| DNA polymerase III, alpha subunit [Bifidobacterium breve DSM 20213] gi|291381352|gb|EFE88870.1| DNA polymerase III, alpha subunit [Bifidobacterium breve DSM 20213] Length = 1185 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 362/1070 (33%), Positives = 562/1070 (52%), Gaps = 62/1070 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L H+ YSLL+GA + ++ + A + PA+ ITD N+ A E A G++P Sbjct: 7 NFVQLHNHTHYSLLDGASKIPDLAKRAAELEMPAVGITDHGNMHGAYEMYTNCVANGVKP 66 Query: 70 IIGCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + QD ++ Q + I L AE + L+ L+ + Sbjct: 67 IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126 Query: 122 LDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + +R + + T +G+I +G SG I A + F+ +FG Sbjct: 127 ANLEGRVMRYPRMDKEVLSTYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A + PL+ATN+S ++ ED A D ++ + Sbjct: 187 KDNFFIELMDHGLTIENQVTDDLLTIAKKLDAPLLATNDSHYVHAEDAGAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPR 294 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H +P+ Sbjct: 247 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLLIAERCNVMFDDHEDGAFMPQ 306 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F E D E + K GLE R G + ++ D+E VI +M+F Sbjct: 307 FPCPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLNVLKQADYECGVICQMQFC 356 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S Sbjct: 357 GYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVS 416 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 +PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S ++ Sbjct: 417 LPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEK 476 Query: 475 LCKLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLY 522 + K +P PA +SL I D S FRE +DP R+ E ++ +EGL Sbjct: 477 VTKALP--PAATGGKDISLHDIFDPSAKRYAEAREFREMYDSDPDAKRITEEAKGIEGLI 534 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA ++G P++ P+ R+D + T F E GL+K DFLGL LT+ Sbjct: 535 RQTGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTV 592 Query: 582 LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L + G +D + IP DD ETY L+ TLG+FQL+S GMR L+ ++PD Sbjct: 593 IHDTLKNIEANGKPAIDYTKIPLDDAETYKLMARGDTLGVFQLDSDGMRSLLKTLKPDNF 652 Query: 641 EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694 DI AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIYQEQ Sbjct: 653 NDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ A ++++L Sbjct: 713 VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAANAVWDILV 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ I Sbjct: 773 PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 832 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSR 871 Q++ P VN + + + + L AI+ VG I+ A + P F + DF R Sbjct: 833 QVLSPDVNESVYAYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRR 891 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V LNRR++ESL+ AGA D +R L + +++ + ++F+ Sbjct: 892 VPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAD 951 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGY 983 ++ +T+ + + E+ +LG Y S HPL + I LR+M I Sbjct: 952 DGGAEAMGDASVTVPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL 1011 Query: 984 EESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G + LA ++ ++ ++KG+ VT + + FF Sbjct: 1012 IDRAKTMGEGQQVTLAGLITGVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061 >gi|53712001|ref|YP_097993.1| DNA polymerase III subunit alpha [Bacteroides fragilis YCH46] gi|52214866|dbj|BAD47459.1| DNA polymerase III alpha subunit [Bacteroides fragilis YCH46] Length = 1294 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 366/1141 (32%), Positives = 592/1141 (51%), Gaps = 126/1141 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F+ EF+ Sbjct: 34 FVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGPK 93 Query: 63 -----------------------------CAAGI--------QPIIGCQLDIDMQDNLKM 85 C A I +PIIGC++ + + M Sbjct: 94 GEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVARR---TM 150 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVSR + + R + L++ EGLI Sbjct: 151 DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 208 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR--- 196 + + G + + AE+ + +K LFGD Y+ +QRH+ ++ Y Sbjct: 209 ICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQV 268 Query: 197 --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++ + + + L+ TN+ F++EE EAHD L+ ++ + +R T ++ Sbjct: 269 NVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEWM 328 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM +F+D+PEAL NT+EI + + HAPI+P ++ EK Sbjct: 329 KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 388 Query: 299 ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAI-------AKGYHAQ-- 335 + D + EE + + K + G + ++L + AK ++ Sbjct: 389 DLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDPL 448 Query: 336 --DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 + ++RL FEL+++ M F GYFLIV DFI + + +GPGRGS AGS AY L IT Sbjct: 449 SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQIT 508 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 509 KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTMA 568 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSVDR 510 K A++DV R ++P ++ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 569 TKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVRD 628 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 629 TMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 688 Query: 567 GLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GLIK DFLGLKTL++++++++ + +G+++D+ I +D TY L + T+G FQ ES Sbjct: 689 GLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTIGTFQFES 748 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 +GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK+T Sbjct: 749 AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 808 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG + Sbjct: 809 YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 868 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 869 LEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 928 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFD 863 + + +Q + P VN + F V N I + L A+KGVG + IME + PF Sbjct: 929 MDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEERKENGPFK 988 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWV 915 + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 989 GIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETLMRYGNRY 1048 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKP 973 + ++ ++F + D T E E N R E+ ++G Y S HPLD Y Sbjct: 1049 QADKAAAVNSLFGGD--NVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPLDEYAI 1106 Query: 974 ILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +L + E + + G I + +V S ++ ++ G+ G + + E F Sbjct: 1107 VLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEIPF 1166 Query: 1032 F 1032 F Sbjct: 1167 F 1167 >gi|60680202|ref|YP_210346.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis NCTC 9343] gi|60491636|emb|CAH06388.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis NCTC 9343] Length = 1264 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 366/1141 (32%), Positives = 592/1141 (51%), Gaps = 126/1141 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F+ EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGPK 63 Query: 63 -----------------------------CAAGI--------QPIIGCQLDIDMQDNLKM 85 C A I +PIIGC++ + + M Sbjct: 64 GEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVARR---TM 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVSR + + R + L++ EGLI Sbjct: 121 DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 178 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR--- 196 + + G + + AE+ + +K LFGD Y+ +QRH+ ++ Y Sbjct: 179 ICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQV 238 Query: 197 --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++ + + + L+ TN+ F++EE EAHD L+ ++ + +R T ++ Sbjct: 239 NVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEWM 298 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM +F+D+PEAL NT+EI + + HAPI+P ++ EK Sbjct: 299 KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358 Query: 299 ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAI-------AKGYHAQ-- 335 + D + EE + + K + G + ++L + AK ++ Sbjct: 359 DLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDPL 418 Query: 336 --DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 + ++RL FEL+++ M F GYFLIV DFI + + +GPGRGS AGS AY L IT Sbjct: 419 SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQIT 478 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 479 KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTMA 538 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSVDR 510 K A++DV R ++P ++ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 539 TKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVRD 598 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 599 TMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 658 Query: 567 GLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GLIK DFLGLKTL++++++++ + +G+++D+ I +D TY L + T+G FQ ES Sbjct: 659 GLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTIGTFQFES 718 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 +GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK+T Sbjct: 719 AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 778 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG + Sbjct: 779 YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 838 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 839 LEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 898 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFD 863 + + +Q + P VN + F V N I + L A+KGVG + IME + PF Sbjct: 899 MDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEERKENGPFK 958 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWV 915 + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 959 GIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETLMRYGNRY 1018 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKP 973 + ++ ++F + D T E E N R E+ ++G Y S HPLD Y Sbjct: 1019 QADKAAAVNSLFGGD--NVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPLDEYAI 1076 Query: 974 ILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +L + E + + G I + +V S ++ ++ G+ G + + E F Sbjct: 1077 VLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEIPF 1136 Query: 1032 F 1032 F Sbjct: 1137 F 1137 >gi|284030835|ref|YP_003380766.1| DNA polymerase III subunit alpha [Kribbella flavida DSM 17836] gi|283810128|gb|ADB31967.1| DNA polymerase III, alpha subunit [Kribbella flavida DSM 17836] Length = 1182 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 367/1080 (33%), Positives = 574/1080 (53%), Gaps = 72/1080 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S SFVHL VH+ YS+L+GA ++ + PAIA TD +F A EF + A Sbjct: 1 MASSDSFVHLHVHTEYSMLDGAARIDELFKTAQEMGMPAIATTDHGYVFGAYEFWKTAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKM--------TNQGKTPFP---TVPSIVLLVSTAEGYQRLI 113 ++PIIG + + + N G+ + LL G L Sbjct: 61 YDVKPIIGVEAYLTPHTHRSERKRVKWGDANSGRDDVSGSGAYTHMTLLAKNTSGMHNLF 120 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 ++ S + L+ R+ LQ G +GLI TG SG + + A + Sbjct: 121 KM-SSLASLEGYYFKPRMDRELLQTYG-QGLIATTGCPSGEVQTRLRLGQYKEAVEAAAE 178 Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 F+ +FG + Y L H G +R + +++LA LPLVATN+ + ED AH L Sbjct: 179 FRDIFGAENYYCELMDHGLGIERNVQQDLLKLARELGLPLVATNDLHYTKPEDATAHAAL 238 Query: 232 MAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHA 289 + V + +S +R + + Y+K +EM ++ DLPEA +NT+ IA +C + Sbjct: 239 LCVQSGSTLSDPNRFKFDANEFYVKTAAEMREVWKDLPEACDNTLLIAEQCDVSFTEGEG 298 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +PRF E + EE+ + GL R G R++ ++E+ VI Sbjct: 299 RFMPRFPCPEGHN----EESWFVAEVETGLHRRYPDGV------PDHVRKQAEYEIEVIT 348 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 ++GYFL+VADFI WAK++ I VGPGRGSGAGS+ AYA+ ITD+DPL+ L+FERFLN Sbjct: 349 SKGYAGYFLVVADFINWAKEHGIRVGPGRGSGAGSMCAYAMRITDLDPLQHGLIFERFLN 408 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+RMSMPDFDIDF RR EVIRYV KYG +RVA I+T+G+++AK A++D GR L P+ Sbjct: 409 PERMSMPDFDIDFDDRRRPEVIRYVTEKYGDDRVAMIVTYGTIKAKQAIKDAGRVLDYPF 468 Query: 470 SQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516 + DR+ K +P DP H + ++ FR+ +D V ++++ ++ Sbjct: 469 AMGDRITKAMPPAVMGKDVPLSGIFDPQH----KRYSEAGEFRQLYESDADVRKIVDTAR 524 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 LE L R HAAG+++ PL +L+P+ R + +TQF+ E GL+K DFLGL Sbjct: 525 GLENLKRQWGVHAAGVIMSSEPLIELIPIMRREQDGQVITQFDYPSCETLGLVKMDFLGL 584 Query: 577 KTLTLLQKSL-DFLAQRGVKVDLSLIP--FDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 + LT++ ++ + A RG+ +DL + DD T+ LL TLG+FQ + MR L Sbjct: 585 RNLTIMDDAVKNVEASRGITLDLDELAKTLDDKATFELLGRGDTLGVFQFDGGPMRALLR 644 Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQG 687 M+PD EDI A+ +LYRPGP+ ++ Y RKN +++I H ++P+L T G Sbjct: 645 LMKPDNFEDISAVGALYRPGPMGANSHTNYALRKNKQQEISYPHDELAVALEPILGTTYG 704 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVM IAQ L+GY+L +AD+LRRAMGKK +E +D + F G G S Sbjct: 705 LIVYQEQVMAIAQQLAGYTLGKADLLRRAMGKKKREVLDAEYVGFSEGMKAGGFSDASIK 764 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++++L F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K+ + Sbjct: 765 ALWDVLVPFSDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAAVLTSVKDDKDKMAIYLN 824 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLE 866 + R+ I+++PP VN +F I + L+AI+ VG I+ A +K F Sbjct: 825 ECRRMGIKVLPPDVNESDSNFTPVGTDIRFGLSAIRNVGVNVVAEIVAAREEKGRFTDFV 884 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF +V N+RV+ESL AG+ D ++R ++ + A +++N + ++ Sbjct: 885 DFIDKVPLPVCNKRVIESLAKAGSFDSMNHARRAVVAVHEQAVDEAIDLKRNEAHGQFDL 944 Query: 927 FA-----HEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ E G + ++T+ +E + + + +E+ +LG Y S HPL + +L Sbjct: 945 FSMGDDDAEDGEGNRRLTVTVPEIEEWDKATKLAHERDMLGLYVSDHPLFGVEHVL---- 1000 Query: 980 IKGYEESVATI-------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + ++ + G+ + + +V + Q+K ++G VT + E F Sbjct: 1001 TNGTDCTIGQLLADEDRPDGSQVTIGGLVTAVQRKVNKRGDIYAIVTIEDLEGSIEVMMF 1060 >gi|297199041|ref|ZP_06916438.1| DNA polymerase III subunit alpha [Streptomyces sviceus ATCC 29083] gi|197716004|gb|EDY60038.1| DNA polymerase III subunit alpha [Streptomyces sviceus ATCC 29083] Length = 1179 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 357/1069 (33%), Positives = 567/1069 (53%), Gaps = 58/1069 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAKKAGVT 63 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117 PIIG + + + + N + G+ P + + + G L +L S Sbjct: 64 PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFKLSS 122 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Y ++ R+ + + +EG++ TG SG + A K ++ + Sbjct: 123 DAYAEGWLQKWPRMDKETISQW-SEGIVASTGCPSGELQTRLRLGQYDEALKAAADYQDI 181 Query: 178 FG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ + Sbjct: 182 FGKDRYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALLCIQ 241 Query: 236 HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP-I 291 +S DR R +YLK+ EM ++ S E NT+ +A A + Sbjct: 242 TGKNLSDPDRFRFDGTGYYLKSTDEMYAVDSSDAWQEGCANTLLVAEMVDTTGMFEAKNL 301 Query: 292 LPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P+F DI + E + + G+E R G +D +++ D+E++VI Sbjct: 302 MPKF------DIPEGYTEVTWFKEEVRRGMERRFPGGV------PEDRQKQADYEMDVII 349 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLN Sbjct: 350 QMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLN 409 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY Sbjct: 410 PERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPY 469 Query: 470 SQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLEG 520 + DRL K +P D + L I D S R+ EA +P V ++++ ++ +EG Sbjct: 470 AMGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRSMYENEPDVKKVIDTAKGVEG 529 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT Sbjct: 530 LVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLT 589 Query: 581 LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ ++ + A +G+ +++ +P DD +T+ LL TLG+FQ + MR L MQPD Sbjct: 590 IMDDAIKMVKANKGIDLEMLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRQMQPDN 649 Query: 640 IEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQE 693 EDI A+ +LYRPGP +++ + Y RKNG+++I IH ++ L+E T G+I+YQE Sbjct: 650 FEDISAVSALYRPGPMGMNSHINYAERKNGRQEITPIHKELEEPLEEVLAVTYGLIVYQE 709 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QV + AQ+++GYSL EAD+LRR MGKK +E+ K F +GA KNG S ++++L Sbjct: 710 QVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAQKNGYSDEAIQALWDVL 769 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 770 VPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMK 829 Query: 814 IQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871 I+++PP+VN +F GD+ I + L A++ VGT I+ + A + S D+ + Sbjct: 830 IKVLPPNVNESEHNFAAQGDDVILFGLEAVRNVGTNVVESIIRSRKAKGKYASFPDYLDK 889 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--H 929 V++ N+R ESL+ AGA D G++R L D++ V++ ++F Sbjct: 890 VEAVACNKRTTESLIKAGAFDTMGHTRKGLTAHFDSMIDNVVAVKRKEAEGQFDLFGGMG 949 Query: 930 EKGTFSDKITLE-KFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 E + L+ +F+ + + + E+ +LG Y S HPL + +L G + Sbjct: 950 EADSSEPGFGLDVEFTTDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQL 1009 Query: 987 VAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1010 TGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|72160451|ref|YP_288108.1| DNA polymerase III subunit alpha [Thermobifida fusca YX] gi|71914183|gb|AAZ54085.1| DNA polymerase III, alpha subunit [Thermobifida fusca YX] Length = 1188 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 365/1080 (33%), Positives = 582/1080 (53%), Gaps = 76/1080 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA L + ++ A PA+A+TD N+F + EF Q + +G++PI Sbjct: 6 FVHLHVHTEYSMLDGAAKLKPLFEEAARLGMPAVAMTDHGNMFGSYEFWQTSKESGVKPI 65 Query: 71 IGCQLDIDMQDNLK----MTNQGKTPFPTVPS------------IVLLVSTAEGYQRLIE 114 IG + + + GKT + + A+G + L Sbjct: 66 IGIEAYVAPESRFHKQRVFWGTGKTGDEAAEGGKDVSGGGRYLHLTMWARNAKGLRNLFR 125 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S + + R+ L + + +EG+++ TG SG + + A + Sbjct: 126 L-SSLASFEGYYTKPRMDLELMAQY-SEGIMVTTGCPSGGVQTRLRLGQEREAIEYAGKL 183 Query: 175 KKLFG-DRLYVNLQRHRGYDRYRESQVVQLAYTHELPL--VATNNSLFLSEEDYEAHDVL 231 + +FG D ++V L H G D RE + L +L L V TN+S +++E+ AHD L Sbjct: 184 RDIFGRDSVFVELMDH-GLDIEREVRSGLLTVAKKLGLRPVVTNDSHYVTEDQAAAHDAL 242 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSI--FSDLPEALENTVEIARRC--SFILQ 286 +AV + R R +YLK+ EM S+ F + E NT+ IA + Sbjct: 243 LAVGVGKNLDDPTRFRFNGTGYYLKSAEEMRSLNTFDEWLEGCRNTLWIAEQVEDGAYDD 302 Query: 287 VHAP--ILPRFI----EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 V P ++P+F E + ++KE E + N+ G +++ R+R Sbjct: 303 VFRPRDLMPKFPVPEGETQASWLRKEIERCIPNRYPNG--------------PSREVRER 348 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 ++ EL++I RM F YFL+VAD Q+A+++ I +GPGRGS GS+ AY L ITD+DPL Sbjct: 349 IEHELSIIERMGFPAYFLVVADICQYARRSGIALGPGRGSATGSMVAYVLGITDLDPLEH 408 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 SLLFERFLNP+R+SMPD D+DF + +R ++IRYV +YG +RVAQI+TFG+++AKAA++D Sbjct: 409 SLLFERFLNPERVSMPDIDLDFDERKRGDMIRYVTERYGEDRVAQILTFGTIKAKAAIKD 468 Query: 461 VGRALQMPYSQVDRLCKLIPNDPA---HPVSLQAIADDS--RFREAR------LADPSVD 509 R L PY+ D++ K P PA + L A+ D+S R+ EA ++P V Sbjct: 469 ATRILGYPYALGDKITKAFP--PAVGGKEIPLSAVFDESHPRYNEAAELRQLIESNPDVR 526 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 ++ E + LEGL R HAAG+++ PL ++P+++ +T F E+ GL+ Sbjct: 527 KVYETASGLEGLTRGTGVHAAGVILSAEPLLDVIPLHKRETDGAIITGFPYPQCEEMGLL 586 Query: 570 KFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ LT++ ++ + A G +++LS +P D+ +TY LL+ TLG+FQL+ M Sbjct: 587 KMDFLGLRNLTVIDDAIQNIKANEGKEINLSALPLDNKKTYELLSRGDTLGVFQLDGGPM 646 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPML 682 R L+ M+P DI A+++LYRPGP+ + Y +R NG+++I IHP +DP+L Sbjct: 647 RALLKRMEPKKFGDIAAVLALYRPGPMAANAHNDYADRSNGRQEITPIHPELKEALDPIL 706 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 E+ +I+YQEQVM IAQ L+GY+L AD+LRRAMGKK KE ++K+ +F G G S Sbjct: 707 AESFHLIVYQEQVMAIAQQLAGYTLGGADLLRRAMGKKKKEALEKEYTKFSEGMLSRGFS 766 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 K +++++ F+ Y FNKSH A Y +ISY TA++K ++P ++AA +T D+ +K+ Sbjct: 767 KEAMQALWDVMLPFSGYAFNKSHTAGYGMISYWTAYLKANHPASYMAALLTSVADDKDKM 826 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861 + + R+ I+++PP VN + F N I + L A++ VG I++ +K Sbjct: 827 AVYLAECRKMGIRVLPPDVNESGLQFTPVGNDIRFGLGAVRNVGANVVESILKTREEKGK 886 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F S DF S+++ N+RV+ESL+ AGA D G+SR+ L + + +K + Sbjct: 887 FTSFVDFLSKIELTVCNKRVIESLIKAGAFDSLGHSRLDLYRHHEAAVDAVLSSKKQEAH 946 Query: 922 KHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPIL 975 ++F + FS+ + ++ E+ +LG Y S HPL + IL Sbjct: 947 GQFDLFGGGDEEDGGESAPLGFSINWTGEEWDRKTKLAFEREMLGLYVSSHPLAGAERIL 1006 Query: 976 RKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + V R NN +R+A ++ +++ + G++ T + EA FFP Sbjct: 1007 ARASDAPLLDVVNGERRNNDEVRIAGLISKVEKRINKAGNQWAIATVEDLDASIEALFFP 1066 >gi|163791498|ref|ZP_02185904.1| DNA-directed DNA polymerase III, alpha subunit [Carnobacterium sp. AT7] gi|159873221|gb|EDP67319.1| DNA-directed DNA polymerase III, alpha subunit [Carnobacterium sp. AT7] Length = 1112 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 356/1033 (34%), Positives = 560/1033 (54%), Gaps = 56/1033 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV LQV SSYSLL+ +++ ++ K AIA+TD N L+ ++F + I+P Sbjct: 2 SFVQLQVISSYSLLQSTVTIEALVLKAKERGYKAIALTDYNILYGIVDFYKMCKKHHIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G LD+ + T++ SI+LL A GY+ L+ L S LL ++ Sbjct: 62 LLGLTLDVG---GIIKTDENH-------SILLLAKNAAGYESLLTLSSEKMLL---AETE 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 R+ + ++E + LI +T G G ++ N + A + ++ LF +R Y+ +Q Sbjct: 109 RLTIDQIKE-HSRNLIAVTPGEKGEVEHFLLQNEKKAAAAVVEKWQALFPERQFYLGVQL 167 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 H+ +++ T LP VA + ++ D + VL A+ V+ + V Sbjct: 168 HQNLLPIKDALTELAKETGTLP-VALQDVRYIDATDDFSTRVLRAINKGEVL-ETQHAAV 225 Query: 249 TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRF---IEKECDDI 303 ++YL S+ F D L EA + T +IA + ++ +LP+F EK + Sbjct: 226 IGEYYLPESSQAEKRFIDNGLKEAAQRTNDIANMIDVEIALNQQLLPKFPLPTEKTTTEF 285 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 KE+ + GLE R+++ + Y RL++EL VI +M F YFLIV D Sbjct: 286 LKEQ-------CLVGLEKRVSE-------PDKRYTDRLEYELTVIGKMGFEDYFLIVWDV 331 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 + +A K I G GRGS AGS+ AY L ITD+DP+ + LLFERFLN +R +MPD D+DF Sbjct: 332 MAYAHKVKIVTGAGRGSAAGSLVAYLLEITDVDPIEYDLLFERFLNEERYTMPDIDLDFP 391 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+++++YV+NKYG VAQI TFG+L AK AL+DV R + S+ K IP+ Sbjct: 392 DNRREDILQYVKNKYGKNHVAQIATFGTLAAKMALKDVSRVFGLSPSEASVWSKAIPS-- 449 Query: 484 AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 ++L+ A R + L E ++K+EGL RH STHAAG+VI D+PL+ Sbjct: 450 VLGITLEKAFKQSVNLRNLVGENEKNTLLFETAKKIEGLPRHISTHAAGVVISDKPLTHY 509 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+ + SD+ +TQ+ M +E+ GL+K DFLGLK L+++ +L + + G +++L I Sbjct: 510 VPLQKG-GSDILLTQYPMGNVEEIGLLKMDFLGLKNLSIIDNALKLIQRETGERLNLLNI 568 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P D ET L +GIFQ ES+G++ L ++P +EDI A+ +LYRPGP++ I + Sbjct: 569 PMQDQETLQLFRKGDMVGIFQFESAGIKSVLRRLEPTSMEDIAAVNALYRPGPMEQIDTF 628 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK G I H + +L T GV++YQEQVMQ+A + GY+L +AD+LRRA+GKK Sbjct: 629 IKRKKGLLPIEYPHETLSEILSVTYGVMVYQEQVMQVASKMGGYTLGQADILRRAIGKKQ 688 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K +DK+++ F SGA+K G S +A+ +++ + +FA+YGFN+SHA AY+ I+YQ A++K Sbjct: 689 KSVIDKERQHFTSGAAKLGYSPEVAIQVYDYIERFANYGFNRSHAVAYSFIAYQMAYLKA 748 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP F A + ++N K+K + +A++ NI+++ P +N F + +I + ++ Sbjct: 749 HYPHAFFVALLNSALNNSAKMKDYIIEAKKRNIKVLSPDINASFGGFSLVKGQILFGFSS 808 Query: 842 IKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IKG+ + D + L DF R++ K L ++ L++ GA D F YSR Sbjct: 809 IKGLRRDMIDDMVTNRKNDGSYKDLIDFLKRLNKKWLKPEYIKPLIYVGAFDQFEYSRGT 868 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 LL S++ I Q V + N K F+ +T+E+ + ENE+ LG Sbjct: 869 LLASIEGI---IQSVHMSGNNSGLFELLKPKYEFASDLTIEE--------KLENEELFLG 917 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y SGHP + Y + I E I G R+ + + + T+KG + +VT Sbjct: 918 TYLSGHPTEKYDSVRPWKQIVYVNE---LIIGKTSRVIGSIKNIHKITTKKGEPMAFVTI 974 Query: 1021 SEPAKEYEANFFP 1033 S+ + + FP Sbjct: 975 SDTSGDCSLTLFP 987 >gi|295839452|ref|ZP_06826385.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74] gi|197698735|gb|EDY45668.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74] Length = 1181 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 366/1080 (33%), Positives = 568/1080 (52%), Gaps = 76/1080 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K+P F HL VH+ YSLL+GA L ++ IA++D NL A +F +A AG Sbjct: 4 KTP-FTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKKAG 62 Query: 67 IQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIEL 115 + PIIG + + + + N + G+ P + + + + G L +L Sbjct: 63 VTPIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTIWAANSTGLHNLFKL 121 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S Y ++ R+ + + +EGLI TG SG + + A K ++ Sbjct: 122 SSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADYQ 180 Query: 176 KLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 +FG DR ++ L H G D R R+ ++++ +P + TN+S + + AHD L Sbjct: 181 DIFGKDRYFLELMDH-GIDIEHRVRDG-LLEIGKKLGIPPLVTNDSHYTYAHESVAHDAL 238 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVH 288 + + +S DR R +YLK EM +I S E NT+ +A + Sbjct: 239 LCIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAIDSSDAWQEGCRNTLLVAEQVDTTGMFE 298 Query: 289 A-PILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR-LDFEL 345 ++P+F I + +I +E R G+E R G D RQR ++E+ Sbjct: 299 KRDLMPKFDIPEGFTEITWFQEEVRR-----GMERRFPAGV-------PDDRQRQAEYEM 346 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FE Sbjct: 347 DVIIQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFE 406 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L Sbjct: 407 RFLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVL 466 Query: 466 QMPYSQVDRLCKLIPND-------------PAHPVSLQAIADDSRFREARLADPSVDRLL 512 PY+ DR+ K +P D P HP +A R +P V +++ Sbjct: 467 GYPYAMGDRITKAMPADVLGKGIDLDGITNPTHPRYSEA----GEVRGMYENEPDVKKVI 522 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + ++ +EGL R HAAG+++ P+ P++ ++ +TQ++ E GL+K D Sbjct: 523 DTAKGVEGLVRQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMD 582 Query: 573 FLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGL+ LT++ ++ + + +G ++DL IP DD +TY LL TLG+FQ + MR Sbjct: 583 FLGLRNLTIMDDAVKMVKSNKGRELDLLAIPLDDPKTYELLCRGDTLGVFQFDGGPMRSL 642 Query: 632 LEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----T 685 L M+PD EDI A+ +LYRPGP +++ Y RKNG+++I IHP ++ LKE T Sbjct: 643 LRLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLT 702 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK +E++K F +GA KNG S Sbjct: 703 YGLIVYQEQVQKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEA 762 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 ++++L FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + Sbjct: 763 IQALWDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVY 822 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFD 863 + R+ I+++PP VN +F GD+ I + L A++ VG I+ + A + Sbjct: 823 LNECRRMGIRVLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVESIIRSRKAKGKYA 882 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 S D+ +V++ N+R ESL+ AGA D G++R L + + V++ Sbjct: 883 SFPDYLDKVEAVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQ 942 Query: 924 ENIF--------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 ++F E G F +T E S + E+ +LG Y S HPL + +L Sbjct: 943 FDLFGGMGDDDGKDEPG-FGLDVTFGDDEWEKSYL-LAQEREMLGLYVSDHPLFGLEHVL 1000 Query: 976 RKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + G+ + + ++ Q+K T++G+ T + A E FFP Sbjct: 1001 SDKADAGIGQLTGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060 >gi|297161306|gb|ADI11018.1| DNA polymerase III subunit alpha [Streptomyces bingchenggensis BCW-1] Length = 1181 Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust. Identities = 358/1076 (33%), Positives = 557/1076 (51%), Gaps = 70/1076 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F Q+A AGI Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFNACQEMGMTHIAMTDHGNLHGAYDFYQQATGAGIT 63 Query: 69 PIIGCQLDIDMQDN-LKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118 PIIG + + + K Q P + + S G L L S Sbjct: 64 PIIGIEAYVAPESRRYKRRVQWGQPHQKRDDVSGSGGYTHKTIWASNKAGLHNLFRLSSD 123 Query: 119 MYL----LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 Y+ + + W +EGLI TG SG + A K + Sbjct: 124 AYMEGYFVKWPRMDKETIAQW-----SEGLIASTGCPSGELQTRLRLGQFDEALKAASEY 178 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIEIERRVRDGLLEVGKKLGIPPLVTNDSHYTYSREAVAHDALL 238 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA 289 V +S DR R +YLK+ EM +I S E NT+ +A + Sbjct: 239 CVQTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCRNTLLVAEQIDATGWFEK 298 Query: 290 -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 ++PRF E E + + + G+E R G +D +++ ++E++VI Sbjct: 299 RDLMPRFDVPEG----FTEVSWFQEEVKRGMERRYPAGV------PEDRQKQAEYEMDVI 348 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFL Sbjct: 349 IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIDHGLIFERFL 408 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD DIDF + RR EVIRYV KYG ++VAQI T+G+++AK A++D R L P Sbjct: 409 NPERVSMPDVDIDFDERRRGEVIRYVTEKYGADKVAQIGTYGTIKAKNAIKDSARVLGYP 468 Query: 469 YSQVDRLCKLIPNDP-AHPVSLQAIADDSRFREARLA--------DPSVDRLLEISQKLE 519 Y+ DR+ K +P D + L I DD R + A + V ++++ ++ +E Sbjct: 469 YAMGDRITKAMPADVLGKGIPLSGITDDKHPRYSEAAEVRGMYENEADVKKVIDTARGIE 528 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R HAAG+++ +++ VP++ VTQ++ E GL+K DFLGL+ L Sbjct: 529 GLVRQMGVHAAGVIMSSETVTEHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNL 588 Query: 580 TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ ++ + A +GV + L +P DD +TY LL TLG+FQ + MR L M+PD Sbjct: 589 TIMDDAVKMVRANKGVDLKLLELPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRMMKPD 648 Query: 639 CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692 EDI A+ +LYRPGP +++ + Y RKN +++I IHP ++ LKE T G+++YQ Sbjct: 649 NFEDISAVSALYRPGPMGMNSHINYALRKNAQQEITPIHPELEEPLKEVLGITYGLVVYQ 708 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQV + AQ+L+GYSL +AD+LRRAMGKK KE +DK+ F G + G S ++++ Sbjct: 709 EQVQKAAQVLAGYSLGQADLLRRAMGKKKKEVLDKEFVPFQKGCRERGYSDAAIQAVWDV 768 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 769 LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRRM 828 Query: 813 NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCS 870 I+++ P+VN +F GD+ I + L A++ VG I+ K + S D+ Sbjct: 829 GIKVLTPNVNESEANFAAQGDDVILFGLTAVRNVGANVVEAIIRGRKSKGKYSSFPDYLD 888 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AH 929 +V++ N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 889 KVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYETMIDNVVAVKRKEAEGQFDLFGGM 948 Query: 930 EKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 VE S + ++ E+ +LG Y S HPL + +L Sbjct: 949 GGDDSGGDGPGFGLDVEFSDIEWDKAYLLAQEREMLGLYVSDHPLFGIEHVLNDKA---- 1004 Query: 984 EESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++A + G + + ++ Q+K T++G+ T + A + FFP Sbjct: 1005 DAAIAQLTGGEHADGAIVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIDCMFFP 1060 >gi|320457804|dbj|BAJ68425.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 1177 Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust. Identities = 360/1068 (33%), Positives = 564/1068 (52%), Gaps = 62/1068 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++PII Sbjct: 1 MQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPII 60 Query: 72 GCQL----DIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 G + + QD ++ Q + I L AE + L+ L+ + + Sbjct: 61 GIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVAN 120 Query: 124 QGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180 + +R + + T +G+I +G SG I A + F+ +FG D Sbjct: 121 LEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFGKD 180 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 ++ L H + ++ +A PL+ATN+S ++ ED +A D ++ + + Sbjct: 181 NFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSGSR 240 Query: 240 VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APILPRFI 296 + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H +P+F Sbjct: 241 LDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPKFP 300 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E D E + K GLE R G D ++ D+E VI +M+F GY Sbjct: 301 CPEGWD----ETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 350 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S+P Sbjct: 351 FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 410 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S +++ Sbjct: 411 DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVT 470 Query: 477 KLIPNDPA----HPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524 K +P PA +SL I D + FRE +DP R+ E ++ +EGL R Sbjct: 471 KALP--PAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQ 528 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HA ++G P++ P+ R+D + T F E GL+K DFLGL LT++ Sbjct: 529 TGVHACATIMGSAPITDTSPLLE--RTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIH 586 Query: 584 KSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 +L + +A +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD D Sbjct: 587 DTLKNIVANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFND 646 Query: 643 IIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVM 696 I AL++LYRPGP +D+ Y RKNG +KI IHP ++ LK ET G+IIYQEQV Sbjct: 647 ISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQ 706 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L F Sbjct: 707 SAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPF 766 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 + Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ IQ+ Sbjct: 767 SGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQV 826 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVD 873 + P VN ++ + + + L AI+ VG I+ A + P F + DF RV Sbjct: 827 LSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADII-AEREGPRGKFVNFMDFIRRVP 885 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 LNRR++ESL+ AGA D +R L + +++ + ++F+ + Sbjct: 886 LTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDG 945 Query: 934 FSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMGIKGYEE 985 ++ +T+ + + E+ +LG Y S HPL + I LR+M I + Sbjct: 946 GAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVD 1005 Query: 986 SVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+ G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1006 RARTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSVQCMFF 1053 >gi|257064824|ref|YP_003144496.1| DNA-directed DNA polymerase III PolC [Slackia heliotrinireducens DSM 20476] gi|256792477|gb|ACV23147.1| DNA-directed DNA polymerase III PolC [Slackia heliotrinireducens DSM 20476] Length = 1166 Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust. Identities = 360/1041 (34%), Positives = 565/1041 (54%), Gaps = 51/1041 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN------NLFSALEFSQKAC 63 +FVHL H+ YS+L+GA + ++ + A PA+AITD L A+E +K Sbjct: 2 AFVHLHNHTEYSMLDGATKIKAMVRRAADLGMPAVAITDHGVMCGVPELCDAVEAVKKET 61 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 ++PI GC+ + ++ ++ + K+P + ++LL GY L+ +VS ++ D Sbjct: 62 GVYVKPIYGCE--VYFTEDREIGTRKKSP---LYHLILLAKNNVGYHNLLHIVSESHM-D 115 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDR 181 R + L++ +EG+I T SG + R + A F +F GD Sbjct: 116 NFFYKPRTTIDVLEKY-SEGIIGTTACMSGIVQRRLDDRNYADALAWTKRFADIFAPGD- 173 Query: 182 LYVNLQRH----RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 YV LQ RG +E +Q+ Q+A L +ATN+ +L+ ED A D+++ + Sbjct: 174 FYVELQDQGLTSRGGLTQKEINTQLTQIAQELGLKTIATNDFHYLTREDAAAQDIMLCIG 233 Query: 236 HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 ++ ++R R + D Y+K EM D PEA +NT+E+A +C F+ +LPR Sbjct: 234 TGSLRDDENRMRFSNDEFYMKTEEEMREALKDFPEACDNTIEVAEKC-FVELERDSVLPR 292 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIAR 350 F EE R + GLE R + I+ G H +R ++E +VI + Sbjct: 293 FPLPP----GYTEEQLFREECEKGLERRYGPDWREIKISDGMHDVSVLERYEYEASVIVQ 348 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 F YFLIV ++I+WAK++ I VGPGRGS AG++ YA+ ITD++PL LLFERFL+P Sbjct: 349 QGFPAYFLIVQEYIRWAKEHGIGVGPGRGSAAGAICTYAMGITDLEPLSNGLLFERFLSP 408 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+ MPD D+DF +RR EVI +V+ YG + +A +ITFG LQAK A+RD R L PY+ Sbjct: 409 ERVEMPDIDVDFEDERRQEVIDHVREFYGADHIAGVITFGKLQAKNAVRDAARVLGHPYN 468 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 DRLCK+I ++ + AI ++ + +P +L+ + +EG R HA Sbjct: 469 TGDRLCKVIGDELGIKLK-DAIENNPDLAKIYKEEPESREILDSAMSIEGNIRGEGVHAC 527 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 +I PL VP+ RD + +TQ++ + + GL+K DFLGL+TL +L ++ + Sbjct: 528 ATIICRDPLVDHVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACRNVK 587 Query: 591 QR-GVKVDLSLIPFDDHETYHLL---TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 R G+ + IP DD Y L+ T G+FQ+ES+ M+P DI+A Sbjct: 588 DRFGITIVPDEIPIDDEGAYKLMRLETPYSMDGLFQVESALYVSLFARMKPRTFSDIVAS 647 Query: 647 VSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++L RPGP++N + +Y +R+ G++ + + P+L+ET G I+YQEQ+MQI+ +SG Sbjct: 648 IALNRPGPLENGFVDLYVDRRMGRKPVSYYDDRLKPLLEETYGTIVYQEQIMQISMAMSG 707 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 +S +AD LR+AMGKK E M + K+ + +GA +NG S IA I+ +FA Y FNKS Sbjct: 708 FSAGKADKLRKAMGKKRIEVMMQLKDDWCNGAVENGFSLEIAERIWHDAEEFAKYAFNKS 767 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYAV+ +TA+MK HYP E++AA ++ M + +K+ K+ + I ++PP +N+ Sbjct: 768 HSAAYAVLVCRTAYMKAHYPYEYMAAVLSSYMGSADKLIKYISSCTRNGIPVLPPDINSS 827 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLE 883 ++F + I + LA ++GVG A I+ E PF SL DF +RVD K NR+ LE Sbjct: 828 NLEFTPLEEGIRFGLAGVRGVGAAVAESIIAERDEGGPFTSLHDFVNRVDGKCYNRKTLE 887 Query: 884 SLVFAGALDCFGYSRMQLLQSLDN---IQKYAQWVEKNRTNKHENIF----AHEKGTFSD 936 +LV AGA D GY+R QL+ +D ++ A+ +++R N ++F E F + Sbjct: 888 ALVKAGAFDSTGYTRKQLMYFIDETSLLEDVAKR-QRDRENGQVSMFDLFGDMEDSGFEE 946 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--N 994 I + E+ +L Y S HPL Y+ LR + K +A +G+ N Sbjct: 947 DIPAPDGVEWDKRTLLAFEKSILKIYVSDHPLSQYERSLRSIS-KFQLGDLADHKGDIKN 1005 Query: 995 IRLAAMVVSKQQKKTRKGSRI 1015 ++ + Q K T+KG ++ Sbjct: 1006 GVFCGLISTVQIKMTKKGKKM 1026 >gi|255007521|ref|ZP_05279647.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12] gi|313145215|ref|ZP_07807408.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12] gi|313133982|gb|EFR51342.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12] Length = 1264 Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust. Identities = 367/1141 (32%), Positives = 593/1141 (51%), Gaps = 126/1141 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F+ EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVSALVDKAIKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGPK 63 Query: 63 -----------------------------CAAGI--------QPIIGCQLDIDMQDNLKM 85 C A I +PIIGC++ + + M Sbjct: 64 GEIKDLKKWIAAIEAGEVDCADKEAEIADCKAKIVEAEGRLFKPIIGCEMYVARR---TM 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVSR + + R + L++ EGLI Sbjct: 121 DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 178 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR--- 196 + + G + + AE+ + +K LFGD Y+ +QRH+ ++ Y Sbjct: 179 ICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQV 238 Query: 197 --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++ A + + L+ TN+ F++EE EAHD L+ ++ + +R T ++ Sbjct: 239 NVNKHLIEYAKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEWM 298 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIEK 298 K ++EM +F+D+PEAL NT+EI + + HAPI+P ++ EK Sbjct: 299 KTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEK 358 Query: 299 ECDD----------IQKEEENELRNKAVAGLE----VRLAQGAI-------AKGYHAQ-- 335 + D + EE + + K + G + ++L + AK ++ Sbjct: 359 DLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDPL 418 Query: 336 --DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 + ++RL FEL+++ M F GYFLIV DFI + + +GPGRGS AGS AY L IT Sbjct: 419 SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQIT 478 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 479 KIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTMA 538 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSVDR 510 K A++DV R ++P ++ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 539 TKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVRD 598 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKA 566 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 599 TMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDT 658 Query: 567 GLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GLIK DFLGLKTL++++++++ + +G+++D+ I +D TY L + T+G FQ ES Sbjct: 659 GLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTIGTFQFES 718 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 +GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK+T Sbjct: 719 AGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDT 778 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG + Sbjct: 779 YGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKV 838 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 839 LEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKL 898 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADK-PFD 863 + + +Q + P VN + F N I + L A+KGVG + IME + PF Sbjct: 899 MDECKAMGVQTLGPDVNESNLKFTANRNGNIRFGLGAVKGVGEAAVQSIMEERRENGPFK 958 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWV 915 + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 959 GIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNAKGETFLETLMRYGNRY 1018 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKP 973 + ++ ++F + D T E E N R E+ ++G Y S HPLD Y Sbjct: 1019 QADKAAAVNSLFGGD--NVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPLDEYAI 1076 Query: 974 ILRKM-GIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +L + + E + A + G I + +V S ++ ++ G+ G + + E F Sbjct: 1077 VLEHVCNTRMIELDDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEIPF 1136 Query: 1032 F 1032 F Sbjct: 1137 F 1137 >gi|329961868|ref|ZP_08299882.1| DNA polymerase III, alpha subunit [Bacteroides fluxus YIT 12057] gi|328531308|gb|EGF58152.1| DNA polymerase III, alpha subunit [Bacteroides fluxus YIT 12057] Length = 1273 Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust. Identities = 373/1143 (32%), Positives = 591/1143 (51%), Gaps = 129/1143 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 12 FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 71 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQDNLKM 85 C A I +P+IGC++ + + M Sbjct: 72 GEIKDLKKRIAGIESGEIECEDREAEIAGCRAKIAEAENKLFKPVIGCEMYVARR---TM 128 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVSR + + R + L++ EGLI Sbjct: 129 DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRP-RTDRNELEKY-HEGLI 186 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195 + + G + + + + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 187 VCSACIGGEVPKKIINDRLEEAEEAVRWYKNLFGDDYYLELQRHKATVQRANHEAYPLQQ 246 Query: 196 -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++++ A + + ++ +N+ F+ EE+ EAHD L+ ++ + R T ++ Sbjct: 247 KANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEWM 306 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----------------EK 298 K ++EM ++F D+PEAL NT+EI + + HAPI+P F EK Sbjct: 307 KTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEEFGTEEEYRAKYSEK 366 Query: 299 ECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH--- 333 + D + EE + + K + G E +LA + Y Sbjct: 367 DLFDEFTQDENGKVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKRLYGDPL 426 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L I Sbjct: 427 SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 486 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V +KYG E+VA IIT+G++ Sbjct: 487 TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTDKYGQEKVAHIITYGTM 546 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPSVD 509 K A++DV R ++P S+ DRL KL+P+ P ++L AIA + A + DP V Sbjct: 547 ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLVR 606 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565 L+ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 607 DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 666 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTL++++++++ + RG+K+D+ I D TY L T+G FQ E Sbjct: 667 TGLIKMDFLGLKTLSIIKEAVENVRLHRGLKLDIDKISITDPATYKLYCDGRTIGTFQFE 726 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+++ LK+ Sbjct: 727 SAGMQKYLRELQPGTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 786 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI+G KNG Sbjct: 787 TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHDPK 846 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 847 VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSNITDITK 906 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862 + + I + P VN + F V + I + L A+KGVG + IME + P+ Sbjct: 907 LMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEEREKNGPY 966 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQW 914 + DF RV+ N++ +E L AG D F R Q ++ + +Y Sbjct: 967 KGIFDFVQRVNLNACNKKNIECLALAGGFDSFPELKREQYFAVNSKNEVFIETLVRYGNR 1026 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E D T E E S R E+ ++G Y S HPLD Y Sbjct: 1027 YQADQAAAANSLFGGE--NVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHPLDEYA 1084 Query: 973 PILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +L + + E+ A + G I + +V S ++ ++ G+ G + + E Sbjct: 1085 VVLEHVCNTRMSEIEDKQALV-GREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEF 1143 Query: 1030 NFF 1032 FF Sbjct: 1144 PFF 1146 >gi|182439233|ref|YP_001826952.1| DNA polymerase III subunit alpha [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467749|dbj|BAG22269.1| putative DNA polymerase III alpha subunit [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1178 Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust. Identities = 353/1075 (32%), Positives = 558/1075 (51%), Gaps = 71/1075 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F A A + Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKKADVT 63 Query: 69 PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118 PIIG + + + K Q P + + S G L L S Sbjct: 64 PIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFRLSSD 123 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 Y ++ R+ + + +EGLI TG SG + A + +K +F Sbjct: 124 AYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDYKDIF 182 Query: 179 GD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G+ R ++ L H +R ++++ +P + TN+S + + AHD L+ + Sbjct: 183 GEGRYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALLCIQT 242 Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP-IL 292 +S DR R +YLK EM ++ S E NT+ +A++ A ++ Sbjct: 243 GKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFEAKNLM 302 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P+F E D E + + G+ R G D ++++++E+++I +M Sbjct: 303 PKF---EIPD-GFTEVTWFQEEVRVGMARRFPNGV------PDDRQKQVEYEMDIIIQMG 352 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+R Sbjct: 353 FPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPER 412 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 413 VSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMG 472 Query: 473 DRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 DRL K +P DP HP +A R ++P V ++++ ++ +E Sbjct: 473 DRLTKAMPADVLGKGIDLNGITDPKHPRYSEA----GEIRGMYESEPDVKKVIDTAKGVE 528 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ L Sbjct: 529 GLVRQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588 Query: 580 TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ ++ + + +G+ +++ +P DD +TY LL TLG+FQ + MR L MQPD Sbjct: 589 TIMDDAIKMVKSNKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPD 648 Query: 639 CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692 EDI A+ +LYRPGP +++ Y RKNG+++I IHP ++ LKE T G+I+YQ Sbjct: 649 NFEDISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQ 708 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQV + AQ+++GYSL EAD+LRR MGKK EE+ K F GA + G S +++++ Sbjct: 709 EQVQKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKSLWDV 768 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 769 LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828 Query: 813 NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 I+++PP+VN +F GD+ I + L AI+ VG I+ + A + + DF Sbjct: 829 GIKVLPPNVNESLSNFAAQGDDVILFGLTAIRNVGQNVVDSIIRSRKAKGKYSTFPDFLD 888 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 +V++ N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 889 KVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGG 948 Query: 931 KGTFSDKITLEKFSVENSSVRFE------NEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 VE S + +E E+ +LG Y S HPL + +L + Sbjct: 949 --EEESGEPGFGLDVEFSDIEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKA----D 1002 Query: 985 ESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 S++ + G + + + ++ Q+K T++G+ T + A E FFP Sbjct: 1003 SSISQLMGGDYGDGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057 >gi|298483654|ref|ZP_07001829.1| DNA polymerase III, alpha subunit [Bacteroides sp. D22] gi|298270224|gb|EFI11810.1| DNA polymerase III, alpha subunit [Bacteroides sp. D22] Length = 1268 Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust. Identities = 377/1145 (32%), Positives = 594/1145 (51%), Gaps = 132/1145 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84 AC A I +P+IGC++ + + +LK Sbjct: 64 GEVKDLKKRIAGIEAGTIECADKEAEIAACKAKIVEAENKLFKPVIGCEMYVARRTMDLK 123 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 +GK P + +++L +GY LI+LVS + + R S L++ EGL Sbjct: 124 ---EGK-PDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196 I+ + G + + AE+ + +K LFGD Y+ +QRH+ ++ Y Sbjct: 178 IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237 Query: 197 ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +F+D+PEAL NT+EI + + HAPI+P +F E Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357 Query: 298 KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333 K+ D + EE+ + + K + G + +LA + Y Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R V+VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861 K + + IQ + P VN + F V D I + L A+KGVG IME S + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + ++ ++F E T +E++S + R E+ ++G Y S HPLD Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074 Query: 970 VYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 + +L + E A + G I + +V S ++ ++ G+ G + + Sbjct: 1075 EFSIVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGST 1134 Query: 1028 EANFF 1032 E F+ Sbjct: 1135 EIPFW 1139 >gi|237714902|ref|ZP_04545383.1| DNA polymerase III alpha subunit [Bacteroides sp. D1] gi|262406830|ref|ZP_06083379.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229445227|gb|EEO51018.1| DNA polymerase III alpha subunit [Bacteroides sp. D1] gi|262355533|gb|EEZ04624.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|295084710|emb|CBK66233.1| DNA polymerase III, alpha subunit [Bacteroides xylanisolvens XB1A] Length = 1268 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 375/1142 (32%), Positives = 592/1142 (51%), Gaps = 126/1142 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84 AC A I +P+IGC++ + + +LK Sbjct: 64 GEVKDLKKRIAGIEAGTIECADKEAEIAACKAKIVEAENKLFKPVIGCEMYVARRTMDLK 123 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 +GK P + +++L +GY LI+LVS + + R S L++ EGL Sbjct: 124 ---EGK-PDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196 I+ + G + + AE+ + +K LFGD Y+ +QRH+ ++ Y Sbjct: 178 IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237 Query: 197 ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +F+D+PEAL NT+EI + + HAPI+P +F E Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357 Query: 298 KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333 K+ D + EE+ + + K + G + +LA + Y Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R V+VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861 K + + IQ + P VN + F V D I + L A+KGVG IME S + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E + + + S + R E+ ++G Y S HPLD + Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGAERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077 Query: 973 PILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + E A + G I + +V S ++ ++ G+ G + + E Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137 Query: 1031 FF 1032 F+ Sbjct: 1138 FW 1139 >gi|153808691|ref|ZP_01961359.1| hypothetical protein BACCAC_02990 [Bacteroides caccae ATCC 43185] gi|149128517|gb|EDM19735.1| hypothetical protein BACCAC_02990 [Bacteroides caccae ATCC 43185] Length = 1268 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 373/1145 (32%), Positives = 596/1145 (52%), Gaps = 132/1145 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84 AC A I +PIIGC++ + + +LK Sbjct: 64 GEIKDLKKRLVGIEAGSIECEDKEAEVAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 Q ++ + +++L GY LI+LVS + + R S L++ EGL Sbjct: 124 EGKQDQSGY----HLIVLAKNETGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196 ++ + G I + + AE+ + +K LFGD Y+ +QRH+ ++ Y Sbjct: 178 MVCSACLGGEIPKRITNDQFAEAEEAIQWYKNLFGDDFYLEMQRHKATVPRANHECYPLQ 237 Query: 197 ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ + + LV TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VKVNKYLMEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDMDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +F+D+PEAL NT+E+ + + HAPI+P +F E Sbjct: 298 MKTREEMNELFADVPEALSNTLELLDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRQKFTE 357 Query: 298 KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333 K+ D + EE+ + + K + G + +LA + Y Sbjct: 358 KDLYDEFTQDEHGNVVLSEEDGKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 ++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R +++D+ I +D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDINDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + IME + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIMEERKKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q + L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAANSKGELFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + ++ ++F E T +E++S + R E+ ++G Y S HPLD Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074 Query: 970 VYKPILRKM-GIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 + +L + + E E A + G I + +V S ++ ++ G+ G + + Sbjct: 1075 EFSIVLEHVCNTRMSELEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGST 1134 Query: 1028 EANFF 1032 E F+ Sbjct: 1135 EIPFW 1139 >gi|262341080|ref|YP_003283935.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272417|gb|ACY40325.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 1434 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 349/1013 (34%), Positives = 546/1013 (53%), Gaps = 76/1013 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 + H+ H+ +S+L + + +++D+ PA+ ITD NL + F + Sbjct: 253 YSHIHNHTYFSILYSTVDIRSLVDRAIHFNMPAVGITDYGNLMGSFHFLNAIHSINKKNY 312 Query: 67 ----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 I+ I+GC+ + + DN K V L +GY L +L S + Sbjct: 313 PKKLIKGIVGCE--VFLSDNYLQKKFTKDEPDKRYQQVFLSKNKKGYHNLAKLCSLGFTE 370 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 RI +++ E LI LTG + I + AEK L +K+LFGD Sbjct: 371 GFYAGIPRIGKKLIEKY-KENLIALTGDLNAEIPYTILNYGERKAEKVFLWWKELFGDDF 429 Query: 183 YVNLQRHRGYDRYRESQVVQLAYT--HELPLVATNNSLFLSEEDYEAHDVLMAVAH---- 236 Y+ L RH G + + L ++ + + + NN+ +L + + AHD+L+ V + Sbjct: 430 YIELLRH-GLEEENHVNDILLKFSKKYHVKYIVQNNTFYLDKNEANAHDILLCVKNGEKQ 488 Query: 237 STVVSQKDRPRVT-PDH--YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 ST + + R P+H Y KN EM IFSDLPE+ + E+ + +LP Sbjct: 489 STPIGKGKGYRFGFPNHEFYFKNSEEMKKIFSDLPESFDFLEELVNKIESYHLSRKILLP 548 Query: 294 RF-----IEKECDDI---QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 +F E D I + E L+ G + R ++ ++R+ FEL Sbjct: 549 KFQIPRSFEDPMDKIDGGNRGENRFLKRITYEGAKERYKN-------MTKEIQERILFEL 601 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 I R+ + GYFLIV +FIQ A+K NI +GPGRGS AGSV AY + IT+IDP+++ LLFE Sbjct: 602 KTIERIGYPGYFLIVHNFIQQARKMNISIGPGRGSVAGSVVAYCIGITNIDPIKYHLLFE 661 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+S+PD DIDF RD++I +V KYG +VAQIIT+ ++ AK+++RD GR L Sbjct: 662 RFLNPNRISLPDIDIDFDDRGRDKIIEWVVQKYGKNQVAQIITYATMGAKSSIRDTGRVL 721 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDS---------------RFREARLADPSVD- 509 + + DRL K+IPN +SL+ I ++ + R+ + S++ Sbjct: 722 DLSLKETDRLAKMIPN----MLSLKTILSENCSIEKIRKEDTNNIQKLRKIAINKDSLEG 777 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 ++L+ ++ LEG R HA GI+I + + +P+ SDL +TQF+ +E AGL+ Sbjct: 778 KVLQQAKILEGTIRSTGIHACGIIISPYNIKEYIPVSVSKESDLLLTQFDNHVVEHAGLL 837 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGLKTLT+++ +++ + +R +LS P +D +TY L T+ +FQ ES GM Sbjct: 838 KMDFLGLKTLTIIKDAVNLIKKKRKNNTELSF-PLEDEKTYCLFQKGETIAVFQYESPGM 896 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 ++ L ++PD +D+IA+ +LYRPGP+ I + +RK+GKE I P ++ LKET G+ Sbjct: 897 QKYLRQLKPDKFDDLIAMTALYRPGPLQYIPNFISRKHGKEAITYDLPEMEEFLKETYGI 956 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 IYQEQVM IAQ ++ +S +AD+LR AMGKK KE ++ + +FI A K G SK I Sbjct: 957 TIYQEQVMLIAQKIADFSKGDADLLRIAMGKKQKEVLNTMRNQFIDSAMKKGYSKNILEK 1016 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 I++ F+ Y FNKSHA YA I++QTA++K H+P E++A+ ++ M N+ ++ F ++ Sbjct: 1017 IWKDWEYFSCYAFNKSHATCYAYIAFQTAYLKAHFPYEYMASVLSNNMHNIRQLTFFIEE 1076 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866 R+ NI ++ P +N F+V D NRI + L IKGVG + I+ E + P+ S+ Sbjct: 1077 CRKMNISVIHPDINESDSFFEVTDSNRIRFGLTGIKGVGENAVKIILQEREKNGPYTSIL 1136 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL--------LQSLDNIQKYAQWVEKN 918 D R+D + +N++ LESL+ +G+LDCF R Q L +L+ I ++ +K Sbjct: 1137 DLVKRIDLRIVNKKTLESLILSGSLDCFHIHREQYFHIENDEKLNTLEKIIRFGSKFQKA 1196 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 + E D+ + + ++ + E+ VLG Y S HPLD Y Sbjct: 1197 KNKSTE--------MKMDQPVIMGCDLWSNVYKLSKEKEVLGVYASAHPLDDY 1241 >gi|318057575|ref|ZP_07976298.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actG] gi|318078654|ref|ZP_07985986.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actF] Length = 1181 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 363/1079 (33%), Positives = 567/1079 (52%), Gaps = 74/1079 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K+P F HL VH+ YSLL+GA L ++ IA++D NL A +F +A AG Sbjct: 4 KTP-FTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKKAG 62 Query: 67 IQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIEL 115 + PIIG + + + + N + G+ P + + + + G L +L Sbjct: 63 VTPIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTIWAANSTGLHNLFKL 121 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S Y ++ R+ + + +EGLI TG SG + + A K ++ Sbjct: 122 SSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADYQ 180 Query: 176 KLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 +FG DR ++ L H G D R R+ ++++ +P + TN+S + + AHD L Sbjct: 181 DIFGKDRYFLELMDH-GIDIEHRVRDG-LLEIGKKLGIPPLVTNDSHYTYAHESVAHDAL 238 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVH 288 + + +S DR R +YLK EM +I S E NT+ +A + Sbjct: 239 LCIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFE 298 Query: 289 A-PILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 ++P+F I +I +E R G+E R G D +++ ++E++ Sbjct: 299 KRDLMPKFEIPDGFTEITWFQEEVRR-----GMERRYPAGV------PDDRQKQAEYEMD 347 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FER Sbjct: 348 VIIQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFER 407 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L Sbjct: 408 FLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLG 467 Query: 467 MPYSQVDRLCKLIPND-------------PAHPVSLQAIADDSRFREARLADPSVDRLLE 513 PY+ DR+ K +P D P HP +A R +P V ++++ Sbjct: 468 YPYAMGDRITKAMPADVLGKGIDLDGITNPTHPRYSEA----GEVRGMYENEPDVKKVID 523 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 ++ +EGL R HAAG+++ P+ P++ ++ +TQ++ E GL+K DF Sbjct: 524 TAKGVEGLVRQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDF 583 Query: 574 LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ LT++ ++ + + +G ++DL IP DD +TY LL TLG+FQ + MR L Sbjct: 584 LGLRNLTIMDDAVKMVKSNKGRELDLLAIPLDDPKTYDLLCRGDTLGVFQFDGGPMRSLL 643 Query: 633 EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQ 686 M+PD EDI A+ +LYRPGP +++ Y RKNG+++I IHP ++ LKE T Sbjct: 644 RLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTY 703 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK +E++K F +GA KNG S Sbjct: 704 GLIVYQEQVQKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAI 763 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 ++++L FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + Sbjct: 764 QALWDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYL 823 Query: 807 QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864 + R+ I+++PP VN +F GD+ I + L A++ VG I+ + A + S Sbjct: 824 NECRRMGIRVLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYAS 883 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 D+ +V++ N+R ESL+ AGA D G++R L + + V++ Sbjct: 884 FPDYLDKVEAVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQF 943 Query: 925 NIF--------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F E G F +T E S + E+ +LG Y S HPL + +L Sbjct: 944 DLFGGMGDDDGKDEPG-FGLDVTFGDDEWEKSYL-LAQEREMLGLYVSDHPLFGLEHVLS 1001 Query: 977 KMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + G+ + + ++ Q+K T++G+ T + A E FFP Sbjct: 1002 DKADAGIGQLTGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060 >gi|290961179|ref|YP_003492361.1| DNA polymerase III subunit alpha [Streptomyces scabiei 87.22] gi|260650705|emb|CBG73821.1| DNA polymerase III alpha chain [Streptomyces scabiei 87.22] Length = 1179 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 367/1075 (34%), Positives = 568/1075 (52%), Gaps = 70/1075 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ D IA++D NL A +F A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHTAKKAGVT 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY-QRLIELVSRMYLLDQGK- 126 PIIG + + + N+ K + VS + GY + I +R L + K Sbjct: 64 PIIGIEAYVAPESR---RNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFKL 120 Query: 127 QSVRICLSWLQEI----------GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S WLQ+ +EGLI TG SG + A K ++ Sbjct: 121 SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGELQTRLRLGQFDEAVKAASEYQD 180 Query: 177 LFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +FG DR ++ L H G D R RE ++++ +P + TN+S + + AHD L+ Sbjct: 181 IFGKDRYFLELMDH-GIDIEHRVRED-LLRVGKKLGIPPLVTNDSHYTYAHEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA 289 + +S DR + +YLK+ EM ++ S E NT+ +A + A Sbjct: 239 CIQTGKNLSDPDRFKFDGTGYYLKSTEEMYAVDSSDAWQEGCANTLLVAEQIDTSGMFEA 298 Query: 290 -PILPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 ++P+F DI + E R + + G+ R G D +++++E++ Sbjct: 299 RNLMPKF------DIPEGFTEVTWFREETMRGMHRRFPDGI------PDDRMKQVEYEMD 346 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 I M F GYFL+VADFI WAKK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FER Sbjct: 347 TIISMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFER 406 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L Sbjct: 407 FLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLG 466 Query: 467 MPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQK 517 PY+ DRL K +P D + L I D S R+ EA +P V ++++ ++ Sbjct: 467 YPYAMGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRSMYENEPDVKKVIDTAKG 526 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EGL R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ Sbjct: 527 VEGLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLR 586 Query: 578 TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ ++ + A +G+ +++ +P DD +T+ LL TLG+FQ + MR L MQ Sbjct: 587 NLTIMDDAIKMVKANKGIDLEMLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRQMQ 646 Query: 637 PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690 PD EDI A+ +LYRPGP +++ + Y RKN +++I IH ++ L+E T G+I+ Sbjct: 647 PDNFEDISAVSALYRPGPMGMNSHINYAERKNKRQEITPIHKELEEPLEEVLAVTYGLIV 706 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQV + AQ+++GYSL EAD+LRR MGKK EE+ K F +GA +NG S ++ Sbjct: 707 YQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGAKRNGYSDEAIQALW 766 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K + + R Sbjct: 767 DVLVPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECR 826 Query: 811 QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868 + I+++PP+VN +F GD+ I + L A++ VGT I+ + A + S D+ Sbjct: 827 RMKIKVLPPNVNESEHNFAAQGDDVILFGLEAVRNVGTNVVESIIRSRKAKGKYASFPDY 886 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +V++ N+R ESL+ AGA D G++R L D++ V++ ++F Sbjct: 887 LDKVEAVACNKRTTESLIKAGAFDTMGHTRKGLTAHFDSMIDNVVAVKRKEAEGQFDLFG 946 Query: 929 HEKGTFSDKITLEKFS--VENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGI 980 G ++ + F VE ++ +E E+ +LG Y S HPL + +L Sbjct: 947 ---GMGEEESSEPGFGLDVEFTTDEWEKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKAD 1003 Query: 981 KGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1004 AGIAQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|326779885|ref|ZP_08239150.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus XylebKG-1] gi|326660218|gb|EGE45064.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus XylebKG-1] Length = 1178 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 352/1075 (32%), Positives = 558/1075 (51%), Gaps = 71/1075 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F A A + Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKKADVT 63 Query: 69 PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118 PIIG + + + K Q P + + S G L L S Sbjct: 64 PIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFRLSSD 123 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 Y ++ R+ + + +EGLI TG SG + A + +K +F Sbjct: 124 AYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDYKDIF 182 Query: 179 GD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G+ + ++ L H +R ++++ +P + TN+S + + AHD L+ + Sbjct: 183 GEGKYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALLCIQT 242 Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP-IL 292 +S DR R +YLK EM ++ S E NT+ +A++ A ++ Sbjct: 243 GKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFEAKNLM 302 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P+F E D E + + G+ R G D ++++++E+++I +M Sbjct: 303 PKF---EIPD-GFTEVTWFQEEVRVGMARRFPNGV------PDDRQKQVEYEMDIIIQMG 352 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+R Sbjct: 353 FPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPER 412 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 413 VSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMG 472 Query: 473 DRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 DRL K +P DP HP +A R ++P V ++++ ++ +E Sbjct: 473 DRLTKAMPADVLGKGIDLNGITDPKHPRYSEA----GEIRGMYESEPDVKKVIDTAKGVE 528 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ L Sbjct: 529 GLVRQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNL 588 Query: 580 TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ ++ + + +G+ +++ +P DD +TY LL TLG+FQ + MR L MQPD Sbjct: 589 TIMDDAIKMVKSNKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPD 648 Query: 639 CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692 EDI A+ +LYRPGP +++ Y RKNG+++I IHP ++ LKE T G+I+YQ Sbjct: 649 NFEDISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQ 708 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQV + AQ+++GYSL EAD+LRR MGKK EE+ K F GA + G S +++++ Sbjct: 709 EQVQKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKSLWDV 768 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 769 LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRM 828 Query: 813 NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 I+++PP+VN +F GD+ I + L AI+ VG I+ + A + + DF Sbjct: 829 GIKVLPPNVNESLSNFAAQGDDVILFGLTAIRNVGQNVVDSIIRSRKAKGKYSTFPDFLD 888 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 +V++ N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 889 KVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGG 948 Query: 931 KGTFSDKITLEKFSVENSSVRFE------NEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 VE S + +E E+ +LG Y S HPL + +L + Sbjct: 949 --EEESGEPGFGLDVEFSDIEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKA----D 1002 Query: 985 ESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 S++ + G + + + ++ Q+K T++G+ T + A E FFP Sbjct: 1003 SSISQLMGGDYGDGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057 >gi|294647200|ref|ZP_06724799.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CC 2a] gi|294809189|ref|ZP_06767905.1| putative DNA polymerase III subunit alpha [Bacteroides xylanisolvens SD CC 1b] gi|292637487|gb|EFF55906.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CC 2a] gi|294443583|gb|EFG12334.1| putative DNA polymerase III subunit alpha [Bacteroides xylanisolvens SD CC 1b] Length = 1268 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 376/1145 (32%), Positives = 593/1145 (51%), Gaps = 132/1145 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84 C A I +P+IGC++ + + +LK Sbjct: 64 GEVKDLKKRIAGIEAGTIECADKEAEIATCKAKIVEAENKLFKPVIGCEMYVARRTMDLK 123 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 +GK P + +++L +GY LI+LVS + + R S L++ EGL Sbjct: 124 ---EGK-PDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196 I+ + G + + AE+ + +K LFGD Y+ +QRH+ ++ Y Sbjct: 178 IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237 Query: 197 ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +F+D+PEAL NT+EI + + HAPI+P +F E Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357 Query: 298 KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333 K+ D + EE+ + + K + G + +LA + Y Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R V+VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861 K + + IQ + P VN + F V D I + L A+KGVG IME S + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 + ++ ++F E T +E++S + R E+ ++G Y S HPLD Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGVERWSDLD---RLNRERDLVGIYLSAHPLD 1074 Query: 970 VYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 + +L + E A + G I + +V S ++ ++ G+ G + + Sbjct: 1075 EFSIVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGST 1134 Query: 1028 EANFF 1032 E F+ Sbjct: 1135 EIPFW 1139 >gi|298246262|ref|ZP_06970068.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963] gi|297553743|gb|EFH87608.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963] Length = 1172 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 351/1060 (33%), Positives = 581/1060 (54%), Gaps = 64/1060 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G + ++ + +AITD ++ ALEF + A G+ PI Sbjct: 5 FAHLHVHTEYSLLDGLSHIKKLVQQTKELGMQHLAITDHGAMYGALEFYKACRAGGVHPI 64 Query: 71 IGCQ--LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC+ L DMQD+ K + ++L+ GY+ L++L + + + Sbjct: 65 IGCEAYLTEDMQDHSKRFSD------DYYHLLLIAKNNTGYRNLMKLTT-IANTEGYHLR 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L + EGLI+ +G S I + Q A++ ++ +FG + LY+ +Q Sbjct: 118 PRIDKKVLAQY-AEGLIVTSGCLSAEIPKLLLAGKQQEAQQAARWYQDVFGPENLYLEIQ 176 Query: 188 RHRG-YD------RYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 H G +D + R +Q++ Q+ +PL+ATN+ ++ ED ++HDVL+ + Sbjct: 177 EHHGVWDNDTPSPQARLNQMLYQMHKDLHIPLIATNDLHYIRAEDAQSHDVLLCIQTGRQ 236 Query: 240 VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + + R + + ++YLK+ +EM+ +F +LP+AL NTV +A +C H LP+ Sbjct: 237 IDAQKRFKFDSREYYLKSPAEMLQLFPELPDALSNTVRLAEQCEVDPLAHKASLPQV--- 293 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + + L + G++ R G + +++LD+E ++I +M ++ YFL Sbjct: 294 QIPPQYASANDYLYALCLEGVKYRF-------GELTEPIKRQLDYEFSIIMQMGYATYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 +V D++ +A+ + I RGS AGS+ AY L IT++DPLR+ LLFERFLNP+R MPD Sbjct: 347 VVWDYVNYARSHGIRCS-ARGSAAGSLLAYVLGITNVDPLRYQLLFERFLNPERADMPDI 405 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV-DRLCK 477 D+DF DRR+EVI YV KYG + VAQ++TF ++ AK +++DV RA M V DR+ + Sbjct: 406 DMDFPDDRREEVINYVAQKYGVDHVAQMVTFNTMAAKQSVKDVARA--MGRQDVGDRITR 463 Query: 478 LIPNDPAHPV--SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 LIP P + SL+++ D + E +P +++ + +LEG R+ HAAG++I Sbjct: 464 LIPTGPRITLRGSLESVRDLTSTYEQ---NPEAREIIDQALELEGAVRNTGIHAAGVIIS 520 Query: 536 DRPLSQLVPM-YRDVR--SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 PL P+ RD R S +TQF +E+ GL+KFDFLGL LT++ +L F+ + Sbjct: 521 SEPLELFAPLQLRDFRDASKGFITQFEQSHLEELGLVKFDFLGLSNLTIVDNTLKFIKEA 580 Query: 592 RGVKVDLSLIPFD----------DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 RG ++D+ +P D + + LL+ T GIFQLE + MR+ ++ ++P +E Sbjct: 581 RGEEIDMEKLPLDLTGDPKQDRKRAKAFELLSAGETTGIFQLEGAKMREYIKQLKPTSVE 640 Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 DI+A+++LYRPGP+++I + + K+G+ + + + L+E+ G+I+YQ+QV+ IA Sbjct: 641 DIMAMIALYRPGPMESIPYFIDAKHGRRAVQYLDERLKTWLEESYGIIVYQDQVLLIAVN 700 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 L+G+S + + R+A+ KKI E++ K FI G NG+S IA +FE + F YGF Sbjct: 701 LAGFSWGKVNKFRKALSKKIMHEVEGYKGDFIQGCIHNGMSPKIAEELFEQIKPFGGYGF 760 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NK+HAA+YAV+++ TA++K +Y EF+AA+MT E + KI + ++ ++I+ P V Sbjct: 761 NKAHAASYAVVAFSTAYLKANYTAEFMAATMTTEAADARKIANAIAECKRMGVKILGPDV 820 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRR 880 N F V + + + L AIKG+G I+EA A PF SL DFC+RV+ + + + Sbjct: 821 NKSSKGFTVEEGGVRFGLLAIKGIGDAPIDAIIEARQAKGPFKSLADFCTRVNPQSVGKG 880 Query: 881 VLESLVFAGALDCFGYS-RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKG---TF 934 LE+L AGALD G R LL SL+ +Y + + + + ++F E G F Sbjct: 881 ALETLAKAGALDSLGRGQRHILLASLERAMQYGKGEREAQEHGLLSLFGDIEEHGGDLAF 940 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGN 993 S +E+ ++ + E+ ++G Y + HPL IL G+ + + + G Sbjct: 941 SLATNVEEIPMQQ---LLDWERELIGVYITQHPLTHLSDILASKGVTHHLGQITDELNGQ 997 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+ ++ T+KG + + + FP Sbjct: 998 KVIVGGMIKEARRITTKKGDDMCVIQLEDMYGTVGVTVFP 1037 >gi|239940546|ref|ZP_04692483.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL 15998] gi|239987031|ref|ZP_04707695.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL 11379] gi|291443979|ref|ZP_06583369.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL 15998] gi|291346926|gb|EFE73830.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL 15998] Length = 1178 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 354/1076 (32%), Positives = 558/1076 (51%), Gaps = 73/1076 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F A A + Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKKADVT 63 Query: 69 PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118 PIIG + + + K Q P + + S G L L S Sbjct: 64 PIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFRLSSD 123 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 Y ++ R+ + + +EGLI TG SG + A + +K +F Sbjct: 124 AYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDYKDIF 182 Query: 179 GD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G+ + ++ L H +R ++++ +P + TN+S + + AHD L+ + Sbjct: 183 GEGKYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALLCIQT 242 Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP-IL 292 +S DR R +YLK EM ++ S E NT+ +A++ A ++ Sbjct: 243 GKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQEGCRNTLLVAQQIDTTGMFEAKNLM 302 Query: 293 PRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 P+F I + +I +E R G+ R G D ++++++E+++I +M Sbjct: 303 PKFEIPEGFTEITWFQEEVRR-----GMARRFPNGV------PDDRQKQVEYEMDIIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518 DRL K +P DP HP +A R +P V ++++ ++ + Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPKHPRYSEA----GEIRGMYENEPDVKKVIDTAKGV 527 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ Sbjct: 528 EGLVRQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRN 587 Query: 579 LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ ++ + + +G+ +++ +P DD +TY LL TLG+FQ + MR L MQP Sbjct: 588 LTIMDDAIKMVKSNKGIDLEMLSLPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQP 647 Query: 638 DCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIY 691 D EDI A+ +LYRPGP +++ Y RKNG+++I IHP ++ LKE T G+I+Y Sbjct: 648 DNFEDISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVY 707 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQV + AQ+++GYSL EAD+LRR MGKK EE+ K F GA + G S +++ Sbjct: 708 QEQVQKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKALWD 767 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 +L FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 768 VLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRR 827 Query: 812 FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFC 869 I+++PP+VN +F GD+ I + L A++ VG I+ + A + S DF Sbjct: 828 MRIKVLPPNVNESLSNFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYSSFPDFL 887 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +V++ N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 888 DKVEAVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGG 947 Query: 930 EKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 VE S V +E E+ +LG Y S HPL + +L Sbjct: 948 G--EEESGEPGFGLDVEFSDVEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKA---- 1001 Query: 984 EESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + S++ + G + + + ++ Q+K T++G+ T + A E FFP Sbjct: 1002 DASISQLTGGDYSDGSVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057 >gi|228470784|ref|ZP_04055632.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis 60-3] gi|228307457|gb|EEK16462.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis 60-3] Length = 1272 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 346/1053 (32%), Positives = 551/1053 (52%), Gaps = 104/1053 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 +V L VHS YS+L+G + I+DK A P IA+TD ++ F+ Sbjct: 18 YVPLHVHSHYSILDGMAPVEKIVDKAVACGMPGIALTDHGAMYGIKNFTNYANDKINGDK 77 Query: 61 --------------KACAAG------------------IQPIIGCQ-------LDIDMQD 81 +A AA + IIGC+ L++ +D Sbjct: 78 LSQIKSLGKQIKELEADAANAEEVARLQEEVKTIERSLFKAIIGCEVYVARRSLELKDKD 137 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVRICLSWLQEIG 140 N ++ + ++LL +GY+ LI++VS + + G+ RI L E Sbjct: 138 AKDPDNPTRSIDRSGYHLILLAKNLKGYRNLIKMVSIAW--EHGEYYKPRIDKKLLTE-H 194 Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR------GYDR 194 EG+I + G I + + A + +++ FG+ Y+ + H G + Sbjct: 195 HEGIIASSACLGGEIAQHILHGRLEEARETARWYQETFGEDYYLEIMLHPNSDPLGGQET 254 Query: 195 YRESQVVQ---LAYTHELPL--VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 Y++ Q+V L EL + +ATN++ FL+EED EAHD L+ + ++ +S +R R T Sbjct: 255 YQKQQLVAQEVLKIGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPISDPNRMRYT 314 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 +LK+ EM ++F+D P+ LENT+E+ + + HAP++P F E + E++ Sbjct: 315 KQEWLKSPEEMTALFADYPDVLENTLEVCDKVEYYSIDHAPLMPHF---ELPEGFASEDD 371 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR+ G + R + ++R+D EL VI M F GYFL+V DFI A+K Sbjct: 372 YLRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVVQDFIAAARK 425 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 + VGPGRGS AGS AY L+IT I+P+++ LLFERFLNPDR+SMPD DIDF R Sbjct: 426 LGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDDKNRWR 485 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-- 487 V+ +V NKYG + V+ IIT ++ K A++ V R ++P Q +RLCKLIP+ P V Sbjct: 486 VLDWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRPPEGVKH 545 Query: 488 -SLQ-AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +L+ + ++ FREA ++ + + + +++LEG HA G++I P+S +VP Sbjct: 546 LNLEWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPVSDVVP 605 Query: 545 MYRDVRSDLP----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599 + + D V Q+ K IE GLIK DFLGL+TL+++ +L+ + G+ +D+ Sbjct: 606 LSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALENIKVSYGIDLDID 665 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ L + T+G FQ ES GMR+ L+ ++P +D++A+ +LYRPGP+DNI Sbjct: 666 TIPVDDPKTFELYSQGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGPMDNIP 725 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK+G+++I P ++P LK+T G+ +YQEQVM ++++L ++ ++D LR+AMGK Sbjct: 726 TFIERKHGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDSDSLRKAMGK 785 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM K + +F+ G + I++ KFA Y FNKSH+ YA ++YQTA++ Sbjct: 786 KKEKEMAKYRIKFVENGVTKGHPRETLERIYDGWQKFASYAFNKSHSVCYAWVAYQTAYL 845 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP +F+AA +T + +K+ K+ ++ + +++ P VN F D I + Sbjct: 846 KAHYPAQFMAALLTCNQNKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSANKDGVIRFG 905 Query: 839 LAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L I VG + A I++ ++ + + DF R D +RR LE+L+ +GA D FG Sbjct: 906 LGGISHVGLSVAEAIIKERKEQGAYQDVYDFFQRTDLTNCSRRALEALILSGAFDSFGID 965 Query: 898 RMQLLQS-----------------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 R L + +Y + +E RT ++F + + Sbjct: 966 REVYFAPIAKSGVSGLSYGKDETFLTALMQYGKILESERTQVQASLFGDSDPSVKLPKPI 1025 Query: 941 EKFSVENSS--VRFENEQRVLGFYFSGHPLDVY 971 VE S R EQ +G Y S HPLD Y Sbjct: 1026 PPKDVEPWSNLERLTKEQSYIGMYLSAHPLDPY 1058 >gi|237800158|ref|ZP_04588619.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023015|gb|EGI03072.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] Length = 728 Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust. Identities = 316/741 (42%), Positives = 445/741 (60%), Gaps = 39/741 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A +GI+P Sbjct: 4 SFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G+ + I LL A+GY+ L EL+SR ++ Q + Sbjct: 64 ICGVDLWL----------AGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ +QR Sbjct: 114 VIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R D V LA H PLVATN+ F+ + D+EAH+ + + + R Sbjct: 173 NRTNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHN 232 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + I Sbjct: 233 YSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTI---- 288 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHA--QDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GLE RLA + Y A Q Y RL+FEL++I +M F GYFLIV D Sbjct: 289 DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ D + E++ KLEG+ R+ HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----D 597 P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV D Sbjct: 528 SPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEAPLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVV--YNNRKNGKEKIVSIHPLID-------PMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 +V + NRK+G+ ++ +P +D P+L T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 GMVDDFINRKHGRAELS--YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQK 729 AD+LRRAMGKK EEM KQ+ Sbjct: 706 GADMLRRAMGKKKPEEMAKQR 726 >gi|70726223|ref|YP_253137.1| DNA polymerase III subunit alpha [Staphylococcus haemolyticus JCSC1435] gi|68446947|dbj|BAE04531.1| DNA polymerase III, alpha chain [Staphylococcus haemolyticus JCSC1435] Length = 1067 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 342/1023 (33%), Positives = 569/1023 (55%), Gaps = 78/1023 (7%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H++Y LL +L +N+++ K + +AITDTN L+ +F A I+PI G Sbjct: 4 HLNLHTTYDLLNSSLRINDVVKKAQNNHYDTLAITDTNVLYGFPKFYDACIKANIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + +++ D L T+ ++VL ++ +G + L +L S + + KQ I Sbjct: 64 --MTVNVTDGLY----------TIETVVLAINN-DGLRSLFQLSSAIKM----KQKEVIS 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 + WL++ T I+ + F + Q +++N Sbjct: 107 VEWLKKYSTNFAIIFKQANQSHYSIVEQFQNHQ---------------NIFIN------- 144 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 LA+ + + +V N+ +L++ED E L A+ ++T + + +H Sbjct: 145 ------HSSDLAFYNNIRVVWFKNARYLNQEDVETIPALEAIKNNTKIDLVNDTEDIGEH 198 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 + K ++E+ ++ D E NT+E+A C+ L+ H +LP+F + ++ ++L+ Sbjct: 199 FPK-QNELETLNID-REVWNNTLELASLCNASLEYHQNLLPKFDAPSGNSSKEYLWSQLQ 256 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + ++ +E+ H + Y +RL+ E VI M F YFLIV+D I +AK +++ Sbjct: 257 S-SLKKMELN----------HDERYTKRLEHEYRVITEMGFEDYFLIVSDLIHYAKTHDV 305 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS+ ++ L IT IDP+RF+LLFERFLNP+R++MPD DIDF RR+ VI+ Sbjct: 306 MVGPGRGSSAGSLVSFLLGITTIDPIRFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 365 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YVQ+KYG RV+ I+TFG L +A RDVGR + ++ + KLIP+ ++L Sbjct: 366 YVQDKYGKHRVSGIVTFGHLLTRAVARDVGRIIGFNDKTLNEISKLIPHQLG--ITLDKA 423 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 +D +F++ + ++ E+S+KLEGL RH STHAAGI+I D+PL P+ + Sbjct: 424 YEDEQFKQFVHRNHRHEKWFELSKKLEGLPRHTSTHAAGIIINDQPLYNYAPL--TLGDT 481 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611 +TQ+ M E+ GL+K DFLGL+ L+++ + + + + + +++ IPF+D + + L Sbjct: 482 GLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIITQVKKDLNISLEIEEIPFNDVDVFKL 541 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L+ T GIFQLES G+R+ L+ +QP+ EDI+A+ SLYRPGP++ I Y +R++ + +I Sbjct: 542 LSRGDTTGIFQLESEGVRKVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYISRRHNESEI 601 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 +HP ++P+LK T GVIIYQEQ+MQIA + +S +AD+LRRAM KK + ++ +++ Sbjct: 602 KYLHPDLEPILKNTYGVIIYQEQIMQIASQFASFSYGQADILRRAMSKKNRAVLESERQH 661 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 F+ GA KN + I+ IF+L+ KFADYGF ++HA +Y+ I+Y A++K HYP F A Sbjct: 662 FVEGAIKNKYDEKISKQIFDLILKFADYGFPRAHAVSYSKIAYIMAYLKVHYPNYFYANI 721 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 ++ + N K +A+ ++I+PP++N ++ + IY SL AIKGVG + + Sbjct: 722 LSNVVGNESKTAAIIDEAKNQKLKILPPNINESHWYYRATKSNIYLSLGAIKGVGYQSVK 781 Query: 852 HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 I+ E + + DF R+ ++ R++LESL+ GA D FG +R LL S+D + Sbjct: 782 SIVDERYQNGKYKDFFDFTRRIPNRIKTRKLLESLILVGAFDTFGKTRSTLLSSIDQVLD 841 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 VE+N + +I K +++DK ++FS + S E LGFY S HP++ Sbjct: 842 EVSNVEQN--DLLLDILT-PKQSYADK---DEFSDQMIS---SYEMEYLGFYVSNHPVEK 892 Query: 971 YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 + +GI V N+ + V +Q +T+ G + ++ ++ +A Sbjct: 893 QFNKKQYLGIYTLSNVV-----NHKPILVQVDQIKQIRTKNGQNMAFLVLNDGRHTMDAV 947 Query: 1031 FFP 1033 FP Sbjct: 948 LFP 950 >gi|194306037|dbj|BAG55471.1| putative DNA polymerase III, alpha subunit [uncultured bacterium] Length = 1317 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 376/1111 (33%), Positives = 589/1111 (53%), Gaps = 111/1111 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL VHS YSLL+G +N+++++ QPAIA+TD ++ + F + + G++P Sbjct: 6 TFVHLHVHSEYSLLDGLSRINDLVERAVELGQPAIALTDHGAMYGTMPFYRACKSGGVKP 65 Query: 70 IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG + + MQD K + K F +++L + GY L+E+ SR L D Sbjct: 66 IIGIETYLAMRSMQD--KDAQRDKERF----HMLMLAANQTGYMNLLEVASRAQL-DGYY 118 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 RI +++ +EG+I TG + I RA + +A+K + + +FG DRL+V Sbjct: 119 YKPRIDRNFMAA-HSEGIIATTGCMAAEIPRAIGAGNMALADKLMGEYVDIFGTDRLFVE 177 Query: 186 LQRHRGYDRYRESQ-VVQLAYTHELP--LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 LQ H + +Q ++++A L +ATN+ + D H+VL+ + + V+ Sbjct: 178 LQEHSIPELTTINQKLIEMAPRFGLQNNFLATNDVHYTRAADANPHEVLLCIQTGSTVNA 237 Query: 243 KDRPRVTPDHYLKNRSEMVSIF--SDLPE-----ALENTVEIARRCSFILQVHAPILPRF 295 +YLK+ EM ++F + PE +L N++ I C L LP F Sbjct: 238 PKLTFSDKGYYLKSYDEMFNLFRQNGYPEDIVLNSLRNSLAIVEMCDVNLDSKGYHLPEF 297 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 E D LR+ GL R + + + +D R RL+ ELN+I RM F Sbjct: 298 DVPEGYDAH----GYLRHLCEQGLIWRYGE---ERARNDEDLRARLEHELNIITRMGFDT 350 Query: 356 YFLIVADFIQWA----------------------KKNNIPVGPGRGSGAGSVTAYALTIT 393 YFLIV D +WA K+++I RGSGAGSV AY L IT Sbjct: 351 YFLIVWDLCEWAVRSDAWWETHGDPYPYESYTDWKEHDIWWNV-RGSGAGSVVAYTLGIT 409 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 IDPL L+FERFLNP R+SMPD D+D+ D R +++ Y + +YG E+VAQIITFG++ Sbjct: 410 SIDPLVNGLIFERFLNPGRVSMPDIDLDYPDDVRGQMVAYTKRRYGEEKVAQIITFGTMG 469 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLAD-----PS 507 A+AA+RDVGRAL MP VD + +L+P P PV ++ + D D F A L D + Sbjct: 470 ARAAIRDVGRALDMPLPDVDGVARLVPAIPGKPVKIKNVLDPDHEFYSAELTDRYKRESA 529 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP------VTQFNMK 561 V LL+ + LEG+ RHAS+HAAG+++ DRPL + VP+ R D VTQ+ M+ Sbjct: 530 VKTLLDTATNLEGVARHASSHAAGVIVSDRPLQEYVPLNRPTSGDEGLGGVDRVTQWPME 589 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET-----------Y 609 +E GL+K DFLGL TLT+++++ + +R G + IP+D+ + Sbjct: 590 IVESIGLLKVDFLGLSTLTVMRRAARLIEERYGTVYTMDNIPYDEGHIGPDPERDPELLF 649 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG-- 667 +L G+FQ+E +GMR+ + M+P + IIA +SLYRPGP++NI Y R + Sbjct: 650 DMLGRGDVAGVFQVEGAGMRRLMMEMKPRRFDHIIAAISLYRPGPMENIPEYIRRMHSSI 709 Query: 668 --KEKIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 + IV H P ++P+LK+T G+++YQEQ+++IA L+GY+ +AD++R+A+ KK K+ Sbjct: 710 YDNKDIVEYHTPALEPILKDTYGILVYQEQIIRIASDLAGYAPGDADMIRKAVAKKKKKL 769 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M++ + +F GA + G S+ + I+ + FA YGFNK+HAA YA ++ QTA++K HYP Sbjct: 770 MEEHRIKFTEGAMERGFSREVCEAIWGDIEFFARYGFNKAHAADYAKVTCQTAFLKAHYP 829 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLA 840 VE+LAA +++E DN EK++++ +A+ I I PP +N +DF + D+ I + L Sbjct: 830 VEYLAAMLSVERDNTEKVRRYFAEAKNLGIDIEPPDINRSDLDFTIEDDHERPCIRFGLG 889 Query: 841 AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIK G I+ E A+ F L+D RVD +++ +R LE ++ A + +G + Sbjct: 890 AIKNAGEAALNLILDERRANGTFADLQDLSERVDLRRVGKRALEFMIKARVFERWG-TMP 948 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----------KITLEKFSVENS 948 Q L++LD I + + HE A + F K+T + +S Sbjct: 949 QFLEALDRIV-------ADSSKTHEAAAAGQMSLFGALGGSNGGNGGMKLTADLLKPVDS 1001 Query: 949 ------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 E E+ LG + S HP++ +L T+ G +R+A M+ Sbjct: 1002 LEPIPHKQMLEWEKEALGVHVSEHPMERPLAMLTSHTSATIGGLDITMNGKQVRIAGMIS 1061 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + T+KG + + T + + + FP Sbjct: 1062 TLRTLTTKKGDPMAFATLEDMDNKIDLVLFP 1092 >gi|258648347|ref|ZP_05735816.1| putative DNA polymerase III alpha subunit [Prevotella tannerae ATCC 51259] gi|260851512|gb|EEX71381.1| putative DNA polymerase III alpha subunit [Prevotella tannerae ATCC 51259] Length = 1256 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 369/1136 (32%), Positives = 586/1136 (51%), Gaps = 124/1136 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63 FVHL VHS YS+L+G S+ N+L K AD +A+TD N+ EF +A Sbjct: 4 FVHLHVHSQYSILDGQASIGNLLKKAVADGMQGMALTDHGNMMGVKEFYNEAKKAIGKAK 63 Query: 64 ---------------------AAGIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSI 99 AA +PI+GC++ + ++D T+Q + + Sbjct: 64 ESLKKAQEEGGSEEQIAKLQRAAAFKPILGCEMYVARRTLKDKKDKTDQ------SGHHL 117 Query: 100 VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159 ++L + GY LI+LVS+ ++ D R L + EGLI+ + G I Sbjct: 118 IVLAKNSVGYHNLIKLVSKAWV-DGFYMRPRTDHEELAKY-REGLIVCSACLGGEIPSNI 175 Query: 160 FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-------------VVQLAYT 206 + A++ FK +FGD Y+ LQRH D ++ ++QLA Sbjct: 176 LKDDIDKAKEAARWFKSIFGDDYYLELQRHEVKDPSIQANREVYGLQTKVNEVLIQLAKE 235 Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266 ++ L+ +N+ F++EED EAHD L+ ++ + R T + K + EM IF D Sbjct: 236 LDIKLICSNDVHFVNEEDGEAHDRLICLSTGKDLDDPKRLLYTKQEWFKTQREMNKIFED 295 Query: 267 LPEALENTVEIARRCSFILQVHAPILPRF-------IEKECDDIQKEEE--NEL------ 311 +PEA+ NT+EI + HAPI+P F E+E EE+ NE Sbjct: 296 IPEAMRNTIEICNKVELYSIDHAPIMPNFPIPESFGTEEEYRSRLTEEDLFNEFTRDENG 355 Query: 312 -----RNKAVAGLE------------------VRLAQGAIAKGYH---AQDYRQRLDFEL 345 R + + +E +LA + Y + + ++R++FEL Sbjct: 356 KEIVSREEGLKKIEKLGGFNRLYRIKFEADYLAKLAYDGAKRRYGEPLSDEVKERVNFEL 415 Query: 346 NVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +++ M F GYFLIV D+I A+ + VGPGRGS AGS AY L IT IDP+++ LLF Sbjct: 416 HIMKVMGFPGYFLIVQDYINTARNELGVSVGPGRGSAAGSAVAYCLGITQIDPIKYDLLF 475 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNPDR+S+PD D+DF D R V+++V +KYG E A IIT+G++ K+A++DV R Sbjct: 476 ERFLNPDRISLPDIDVDFDDDGRGRVLQWVTDKYGAENCAHIITYGTMATKSAIKDVARV 535 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQ--------AIADDSRFREARLAD-PSVDRLLEIS 515 ++P S+ +RLCKLIP+ S + AIA REA +D P + + + Sbjct: 536 ERLPLSESNRLCKLIPDKLPEDSSGKSPKLTLDNAIAAIPGLREAEASDNPLLRDTIRYA 595 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKF 571 ++LEG R+ HA G +I +S VP+ ++ L TQ+ + IE+ GLIK Sbjct: 596 RQLEGNVRNTGVHACGFIICKDKISDWVPISTADDKETGEKLRCTQYEGRVIEETGLIKM 655 Query: 572 DFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGLK L++++++L+ + G+ +D+ I D TY L + T+G FQ ES+GM+ Sbjct: 656 DFLGLKNLSIIKEALENIKLSLGIDLDIDKIDISDKATYQLFSDGNTIGTFQFESTGMQG 715 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690 L +QP ED+IA+ +LYRPGP+ I + RK G+E I P ++ LKET G+ + Sbjct: 716 HLRNLQPSTFEDLIAMNALYRPGPMQYIPKFIQRKKGEETITYDLPCMEKYLKETYGITV 775 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM +++ ++ ++ E+D LR+AMGKK+ ++++ +FISG NG + I I+ Sbjct: 776 YQEQVMLLSREIANFTRGESDTLRKAMGKKLIDKLNHMYPKFISGGKANGYDEKILEKIW 835 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 + FA Y FNKSHA Y+ I+YQT ++K +YP +++A +M+ + N+ +I KF +++ Sbjct: 836 DDWKAFASYAFNKSHATCYSWIAYQTGYLKANYPSQYMAGAMSRALSNITEITKFMDESK 895 Query: 811 QFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866 + I + P +N + F V GD I + L AIKGVG+ +I+ E + F + Sbjct: 896 RMGINTLGPDINESLMKFSVNHRGD--IRFGLGAIKGVGSQAVENILKEREVNGQFSDIY 953 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNR 919 + R++ NR+ LE+L AGA D FG +R Q ++ LD + +Y + ++ Sbjct: 954 NVMERINLTTCNRKTLENLAIAGAFDSFGIAREQFVEIDESGGDFLDALIRYGTQYKIDQ 1013 Query: 920 TNKHENIFAHEKGTFSDKITLEKFSVENSSV-RFENEQRVLGFYFSGHPLDVYKPILRKM 978 + ++F E K S +++ R E+ ++G Y SGHPLD YK IL K+ Sbjct: 1014 SQAQNSLFGEEAAAIITKPLPAPVSQPWTNLERLNKERDLIGIYISGHPLDKYKIILNKV 1073 Query: 979 GIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +++ + +I +V ++ T++ G + + YE F+ Sbjct: 1074 CTTTVADLDNLNALADQDISFGGIVTDTREGMTKRDKPYGVIKLEDYKGAYELMFW 1129 >gi|218297030|ref|ZP_03497707.1| DNA polymerase III, alpha subunit [Thermus aquaticus Y51MC23] gi|218242585|gb|EED09122.1| DNA polymerase III, alpha subunit [Thermus aquaticus Y51MC23] Length = 1645 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 332/827 (40%), Positives = 477/827 (57%), Gaps = 64/827 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL H+ +SLL+GA L ++L K + PA+A+TD NLF A+EF +KA A G++ Sbjct: 7 FAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + + +GK + LL GYQ L+ L SR YL + + Sbjct: 67 PIIGYEAYVAAESRFD-RKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYL-EGFYEK 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L+E +EGLI L+G I + + +AE RL + +FGDR ++ +Q Sbjct: 125 PRIDREILRE-HSEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFGDRFFIEIQN 183 Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + +QV+ + A + L +VATN+ ++ +ED AH+VL+A+ T + +R R Sbjct: 184 HGLPEQQKVNQVLKEFAQRYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPERWR 243 Query: 248 VTPDH-YLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPI---LPRF----- 295 D Y+K EM ++ ++ E +NTVEIAR C L + + +PRF Sbjct: 244 FPCDEFYVKTPEEMRAMLPEVEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLPEG 303 Query: 296 ---------------IEKECDDIQK-----------------------EEENELRNKAVA 317 + + D I + E + KA Sbjct: 304 RTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERVLAEALARVEEKAWE 363 Query: 318 GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 L RL + + A+ R +EL+VI RM F GYFLIV D+I WA+ + + VGPG Sbjct: 364 ELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVGPG 423 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF RD VI+YV+ + Sbjct: 424 RGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRER 483 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDS 496 YG ++VAQI TFGSL +KAAL+DV R +P+ + + L KLIP P LQ A+ Sbjct: 484 YGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAVQVVP 543 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 R D + +++E++ +LEGL RHAS HAAG+VI PL+ LVP+ RD + PVT Sbjct: 544 ELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGRPVT 602 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTK 615 Q++M +E GL+K DFLGL+TLT L ++ + + +GV++D +P DD +T+ LL+ Sbjct: 603 QYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDPKTFELLSRG 662 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV--- 672 T G+FQLES GM + G++P +EDIIALVSLYRPGP+++I Y R +G+E + Sbjct: 663 ETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVSYAE 722 Query: 673 --SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 + P+L ET G+ +YQEQ+MQIA ++GYSL EAD+LRRAMGKK EEM K +E Sbjct: 723 FPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRE 782 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 RF+ GA + G+ + A +F++L FA+YGFNK A V+ ++T Sbjct: 783 RFVRGAKERGVPEEEANRLFDMLEAFANYGFNKCLPARAKVVDWRTG 829 Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 103/277 (37%), Positives = 155/277 (55%), Gaps = 14/277 (5%) Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 + SHAAAY+++SYQTA++K HYPVEF+AA +++E + +K+ ++ +DAR I ++PP + Sbjct: 1239 HNSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDI 1298 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRR 880 N DFKV I + L+A+K VG AR I+E PF SL DF R+ + +N+R Sbjct: 1299 NRSGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKR 1358 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKIT 939 LESLV AGALD FG R +LL SL+ + ++A + + +FA E+ + Sbjct: 1359 ALESLVKAGALDAFG-DRARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEPPLVEASP 1417 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNI 995 L++ ++ +R+E E LG Y SGHP+ Y P LR++ EE +RG + Sbjct: 1418 LDEITM----LRYEKE--ALGIYVSGHPVLRY-PGLREVASCTIEELSEFVRGLPGRPKV 1470 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 L+ MV +K TR G + T S+ E F Sbjct: 1471 LLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVF 1507 >gi|254882838|ref|ZP_05255548.1| DNA polymerase III alpha subunit [Bacteroides sp. 4_3_47FAA] gi|319643401|ref|ZP_07998027.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_40A] gi|254835631|gb|EET15940.1| DNA polymerase III alpha subunit [Bacteroides sp. 4_3_47FAA] gi|317385030|gb|EFV65983.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_40A] Length = 1265 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 364/1144 (31%), Positives = 596/1144 (52%), Gaps = 131/1144 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YS+L+G S+ ++DK AD IA+TD ++F EF Sbjct: 4 FVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSSTN 63 Query: 61 ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85 K AG++ PI GC++ + + ++ Sbjct: 64 SEIKDLKKRIAGLEKGTVECDNPEAELVACKEKLETAKKKLFKPIFGCEMYVARR---RL 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQSVRICLSWLQEIGTEG 143 N+ P + +V+L +GY LI+LVS+ + ++ R+ L E EG Sbjct: 121 FNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWTEGFYMRPRTDRVEL----EKYHEG 176 Query: 144 LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRE 197 LI+ T +G + R + AE+ + +K++FGD Y+ LQRH+ ++ Y+ Sbjct: 177 LIVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKL 236 Query: 198 SQV-----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 Q+ ++ + + LV TN+ F+ EE+ EAHD L+ ++ + +R + Sbjct: 237 QQIANEKLIEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQE 296 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFI 296 ++K R+EM +F+D+PEAL NTV+I + F HAPI+P ++ Sbjct: 297 WMKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYT 356 Query: 297 EKECDD----------IQKEEENELRNKAVAG--------LEVRLAQGAIAKGYH----- 333 EK+ D + EE + + + + G LE + +G H Sbjct: 357 EKDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE 416 Query: 334 --AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYAL 390 +++ ++R+ FEL+++ M F GYFLIV DFI+ A++ ++ VGPGRGS AGS AY L Sbjct: 417 VLSEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSAVAYCL 476 Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450 IT IDP+ + LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA IIT+G Sbjct: 477 GITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYG 536 Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPS 507 ++ K A++DV R ++P S+ DRLCKL+P+ P ++L AIA + A ++ DP Sbjct: 537 TMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLPNAIAYVPELQAAEVSPDPI 596 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWI 563 + ++ ++ LEG R+ HA G +I ++ VP+ ++ + VTQ+ I Sbjct: 597 LRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVI 656 Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622 E GLIK DFLGLKTL++++++++ + +G+ +D+ + D TY L + T+G FQ Sbjct: 657 EDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRTIGTFQ 716 Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682 ES+GM++ L ++P ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ L Sbjct: 717 FESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYL 776 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 K+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 777 KDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHD 836 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + N+ +I Sbjct: 837 PKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNISNITEI 896 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEA-SA 858 K +++ I P VN + F V GD I + L AIKGVG + + I+E Sbjct: 897 TKLMDESKATGIMTKGPDVNESYLKFSVNRKGD--IRFGLGAIKGVGESAVQSILEERER 954 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQK 910 + + + DF RV+ NR+ +E+L AGA D F G R + + + Sbjct: 955 NGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEVLVR 1014 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 Y + ++ ++F E + R E+ ++G Y S HPLD Sbjct: 1015 YGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHPLDE 1074 Query: 971 YKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y IL + E + ++ ++ + +V + ++ T+ G G + + E Sbjct: 1075 YAVILENVCNVHMAELADLTPLQNRDLTMGGIVTAVREGYTKTGKPYGIAKVEDYSGSAE 1134 Query: 1029 ANFF 1032 FF Sbjct: 1135 FAFF 1138 >gi|319901087|ref|YP_004160815.1| DNA polymerase III, alpha subunit [Bacteroides helcogenes P 36-108] gi|319416118|gb|ADV43229.1| DNA polymerase III, alpha subunit [Bacteroides helcogenes P 36-108] Length = 1265 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 371/1143 (32%), Positives = 589/1143 (51%), Gaps = 129/1143 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSAPR 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQDNLKM 85 C A I +P+IGC++ + + M Sbjct: 64 GEIKELKKRIAGIESGEIECEDREMEIAGCRAKIAEAESKLFKPVIGCEMYVARR---TM 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + P + +++L +GY LI+LVS + + R + L++ EGLI Sbjct: 121 DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRNELEKY-HEGLI 178 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRY---- 195 + + G + + + + AE+ + +K LFGD Y+ LQRH+ ++ Y Sbjct: 179 ICSACIGGEVPKKIINDRLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHEAYPMQQ 238 Query: 196 -RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++++ A + + ++ +N+ F+ EE+ EAHD L+ ++ + R T ++ Sbjct: 239 KANAKLLEYAKKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEWM 298 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI----------------EK 298 K ++EM ++F D+PEAL NT+EI + + HAPI+P F EK Sbjct: 299 KTKAEMNALFEDIPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRKKYSEK 358 Query: 299 ECDDIQKEEEN----------ELRNKAVAGLE------------VRLAQGAIAKGYH--- 333 + D ++EN + + K + G E +LA K Y Sbjct: 359 DLFDEFTQDENGNVVLDEDAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKKLYGDPL 418 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTI 392 + + ++R+ FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L I Sbjct: 419 SDEVKERMIFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLGI 478 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 479 TKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTM 538 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSVD 509 K A++DV R ++P S+ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 539 ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVR 598 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEK 565 L+ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 599 DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 658 Query: 566 AGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTL+++++++ + RGV++D+ I D TY L T+G FQ E Sbjct: 659 TGLIKMDFLGLKTLSIIKEAVANVRLHRGVELDIDKISIKDPATYKLYCDGRTIGTFQFE 718 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+++ LK+ Sbjct: 719 SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLKD 778 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI+G KNG Sbjct: 779 TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHEPK 838 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 839 VLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSNITDITK 898 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPF 862 + + I + P VN + F V + I + L A+KGVG + IME + P+ Sbjct: 899 LMDECKAMGINTLGPDVNESNLKFTVNREGNIRFGLGAVKGVGEGAVQSIMEEREKNGPY 958 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQW 914 + DF RV+ N++ +E L AG D F R Q ++ + +Y Sbjct: 959 KGIFDFVQRVNLNACNKKNIECLALAGGFDSFPELKREQYFAVNSKNEIFIETLVRYGNR 1018 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E D T E E S R E+ ++G Y S HPLD Y Sbjct: 1019 YQADQAAAANSLFGGE--NVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHPLDEYA 1076 Query: 973 PILRKMG---IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +L + + E+ A + G I + +V S ++ ++ G+ G + + E Sbjct: 1077 VVLEHVCNTRMAEVEDKQALV-GREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEF 1135 Query: 1030 NFF 1032 FF Sbjct: 1136 PFF 1138 >gi|150004438|ref|YP_001299182.1| DNA polymerase III alpha subunit [Bacteroides vulgatus ATCC 8482] gi|294775512|ref|ZP_06741024.1| putative DNA polymerase III subunit alpha [Bacteroides vulgatus PC510] gi|149932862|gb|ABR39560.1| DNA polymerase III alpha subunit [Bacteroides vulgatus ATCC 8482] gi|294450657|gb|EFG19145.1| putative DNA polymerase III subunit alpha [Bacteroides vulgatus PC510] Length = 1265 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 364/1144 (31%), Positives = 596/1144 (52%), Gaps = 131/1144 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YS+L+G S+ ++DK AD IA+TD ++F EF Sbjct: 4 FVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSSTN 63 Query: 61 ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85 K AG++ PI GC++ + + ++ Sbjct: 64 SEIKDLKKRIAGLEKGTVECDNPETELVACKEKLETAKKKLFKPIFGCEMYVARR---RL 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQSVRICLSWLQEIGTEG 143 N+ P + +V+L +GY LI+LVS+ + ++ R+ L E EG Sbjct: 121 FNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWTEGFYMRPRTDRVEL----EKYHEG 176 Query: 144 LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRE 197 LI+ T +G + R + AE+ + +K++FGD Y+ LQRH+ ++ Y+ Sbjct: 177 LIVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKL 236 Query: 198 SQV-----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 Q+ ++ + + LV TN+ F+ EE+ EAHD L+ ++ + +R + Sbjct: 237 QQIANEKLIEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQE 296 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFI 296 ++K R+EM +F+D+PEAL NTV+I + F HAPI+P ++ Sbjct: 297 WMKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYT 356 Query: 297 EKECDD----------IQKEEENELRNKAVAG--------LEVRLAQGAIAKGYH----- 333 EK+ D + EE + + + + G LE + +G H Sbjct: 357 EKDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE 416 Query: 334 --AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYAL 390 +++ ++R+ FEL+++ M F GYFLIV DFI+ A++ ++ VGPGRGS AGS AY L Sbjct: 417 VLSEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSAVAYCL 476 Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450 IT IDP+ + LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA IIT+G Sbjct: 477 GITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYG 536 Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPS 507 ++ K A++DV R ++P S+ DRLCKL+P+ P ++L AIA + A ++ DP Sbjct: 537 TMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLPNAIAYVPELQAAEVSPDPI 596 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWI 563 + ++ ++ LEG R+ HA G +I ++ VP+ ++ + VTQ+ I Sbjct: 597 LRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVI 656 Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622 E GLIK DFLGLKTL++++++++ + +G+ +D+ + D TY L + T+G FQ Sbjct: 657 EDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRTIGTFQ 716 Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682 ES+GM++ L ++P ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ L Sbjct: 717 FESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYL 776 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 K+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 777 KDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHD 836 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + N+ +I Sbjct: 837 PKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNISNITEI 896 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEA-SA 858 K +++ I P VN + F V GD I + L AIKGVG + + I+E Sbjct: 897 TKLMDESKATGIMTKGPDVNESYLKFSVNRKGD--IRFGLGAIKGVGESAVQSILEERER 954 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQK 910 + + + DF RV+ NR+ +E+L AGA D F G R + + + Sbjct: 955 NGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEVLVR 1014 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 Y + ++ ++F E + R E+ ++G Y S HPLD Sbjct: 1015 YGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHPLDE 1074 Query: 971 YKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y IL + E + ++ ++ + +V + ++ T+ G G + + E Sbjct: 1075 YAVILENVCNVHMAELADLTPLQNRDLTMGGIVTAVREGYTKTGKPYGIAKVEDYSGSAE 1134 Query: 1029 ANFF 1032 FF Sbjct: 1135 FAFF 1138 >gi|29347640|ref|NP_811143.1| DNA polymerase III subunit alpha [Bacteroides thetaiotaomicron VPI-5482] gi|29339541|gb|AAO77337.1| DNA polymerase III alpha subunit [Bacteroides thetaiotaomicron VPI-5482] Length = 1267 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 377/1144 (32%), Positives = 592/1144 (51%), Gaps = 130/1144 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84 AC A I +PIIGC++ + + +LK Sbjct: 64 GEIKDLKKRIAGIEAGTVECEDKEAEVAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 +GK P + +++L +GY LI+LVS + + R S L++ EGL Sbjct: 124 ---EGK-PDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196 I+ + G + + AE+ + +K LFGD Y+ +QRH+ ++ Y Sbjct: 178 IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237 Query: 197 ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + + A + + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +F+D+PEAL NT+EI + + HAPI+P ++ E Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357 Query: 298 KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333 K+ D + EEE + + K + G E +LA + Y Sbjct: 358 KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++RL+FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L Sbjct: 418 LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 L+ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R +++D+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + I+E + + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSS--VRFENEQRVLGFYFSGHPLDV 970 ++++ ++F D T E VE R E+ ++G Y S HPLD Sbjct: 1018 RYQEDKRAAINSLFG--GANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDE 1075 Query: 971 YKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + +L + E A + G I + +V S ++ ++ G+ G + + E Sbjct: 1076 FAIVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTE 1135 Query: 1029 ANFF 1032 F+ Sbjct: 1136 IPFW 1139 >gi|253572097|ref|ZP_04849501.1| DNA polymerase III alpha subunit [Bacteroides sp. 1_1_6] gi|251838277|gb|EES66364.1| DNA polymerase III alpha subunit [Bacteroides sp. 1_1_6] Length = 1267 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 377/1144 (32%), Positives = 588/1144 (51%), Gaps = 130/1144 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84 AC A I +PIIGC++ + + +LK Sbjct: 64 GEIKDLKKRIAGIEAGTVECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 +GK P + +++L +GY LI+LVS + + R S L+ EGL Sbjct: 124 ---EGK-PDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELERY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQL- 203 I+ + G + + AE+ + +K LFGD Y+ +QRH+ + L Sbjct: 178 IVCSACLGGEVPKRITAGQFDEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237 Query: 204 ----------AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 A + + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +F+D+PEAL NT+EI + + HAPI+P ++ E Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357 Query: 298 KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333 K+ D + EEE + + K + G E +LA + Y Sbjct: 358 KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++RL+FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L Sbjct: 418 LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 L+ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R +++D+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + I+E + + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSS--VRFENEQRVLGFYFSGHPLDV 970 ++++ ++F D T E VE R E+ ++G Y S HPLD Sbjct: 1018 RYQEDKRAAINSLFG--GANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDE 1075 Query: 971 YKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + +L + E A + G I + +V S ++ ++ G+ G + + E Sbjct: 1076 FAIVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTE 1135 Query: 1029 ANFF 1032 F+ Sbjct: 1136 IPFW 1139 >gi|298383490|ref|ZP_06993051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 1_1_14] gi|298263094|gb|EFI05957.1| DNA polymerase III, alpha subunit [Bacteroides sp. 1_1_14] Length = 1267 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 377/1144 (32%), Positives = 592/1144 (51%), Gaps = 130/1144 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 4 FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63 Query: 61 ---------------------------KACAAGI--------QPIIGCQLDIDMQD-NLK 84 AC A I +PIIGC++ + + +LK Sbjct: 64 GEIKDLKKRIAGIEAGTVECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 +GK P + +++L +GY LI+LVS + + R S L++ EGL Sbjct: 124 ---EGK-PDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRP-RTDRSELEKY-HEGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR-- 196 I+ + G + + AE+ + +K LFGD Y+ +QRH+ ++ Y Sbjct: 178 IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237 Query: 197 ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + + A + + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFIE 297 +K R EM +F+D+PEAL NT+EI + + HAPI+P ++ E Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357 Query: 298 KECDD----------IQKEEENELRNKAVAGLE------------VRLAQGAIAKGYH-- 333 K+ D + EEE + + K + G E +LA + Y Sbjct: 358 KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++RL+FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L Sbjct: 418 LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ P ++L+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIE 564 L+ ++ LEG R HA G +I ++ VP+ ++ + VTQ+ IE Sbjct: 598 RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R +++D+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + I+E + + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSS--VRFENEQRVLGFYFSGHPLDV 970 ++++ ++F D T E VE R E+ ++G Y S HPLD Sbjct: 1018 RYQEDKRAAINSLFG--GANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDE 1075 Query: 971 YKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + +L + E A + G I + +V S ++ ++ G+ G + + E Sbjct: 1076 FAIVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTE 1135 Query: 1029 ANFF 1032 F+ Sbjct: 1136 IPFW 1139 >gi|148654277|ref|YP_001274482.1| DNA polymerase III subunit alpha [Roseiflexus sp. RS-1] gi|148566387|gb|ABQ88532.1| DNA polymerase III, alpha subunit [Roseiflexus sp. RS-1] Length = 1279 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 342/987 (34%), Positives = 539/987 (54%), Gaps = 42/987 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G + + I + +IA+TD ++ +EF A AGI+PI Sbjct: 4 FVHLHVHSEYSLLDGYAATSAIAARAVELGMDSIALTDHGVMYGVMEFYASAKKAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK---Q 127 IG + + T++G + ++LL GY+ L+ L +R +L GK Sbjct: 64 IGLEAYMAPGSRRDATSRGAKNYY---HLLLLAKDEVGYRNLVRLTTRAHLDGMGKGVFA 120 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 RI L++ +GLI+ + +G + + A + ++ L G D ++ L Sbjct: 121 RPRIDRELLEQY-HDGLIVTSACIAGEVIQRLTEKQKDQAREIAAWYRDLLGPDNYFLEL 179 Query: 187 QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-- 242 Q H E ++V++ +PLV TN++ F+ ED EAH +++A+ ++ + + Sbjct: 180 QLHENTPELEEINDELVRIGKELGIPLVVTNDTHFVRPEDLEAHKMILALGYNMTLKELC 239 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++ +++ + EM F LENT IA RC+ L+ LP E Sbjct: 240 AKNYQMDATYHIMSGEEMWRRFKKYGTTPLENTRRIAERCNLTLEFGRVQLPTIDIPEGH 299 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D + LR GL R G+ ++Y +RL +EL+VI + F Y LIV Sbjct: 300 DAA----SYLRLVCEEGLMRRF------NGHPPEEYVKRLAYELDVINQTGFPDYMLIVW 349 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D++++A+ IP P RGS S+ Y L ITD+DP++ LLFERFL+P+R+ MPD DID Sbjct: 350 DYVKFARARGIPCLP-RGSAGASLILYCLGITDVDPVKNKLLFERFLSPERLEMPDIDID 408 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F RR EV+ Y+ KYG E AQIIT+G+L AKAALRD+GR L++P ++VDR+ +LIP Sbjct: 409 FADSRRHEVLEYIAAKYGRENTAQIITYGTLGAKAALRDIGRVLEIPLNEVDRVARLIPA 468 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P QA+ ++ +P + RL++ +QK+EG + THA G+V+ PL Sbjct: 469 LPVGTTIAQALERVPELKQIYTTNPDLARLIDWAQKVEGRMKSVGTHACGVVVSRTPLED 528 Query: 542 LVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 +VP+ R + + + F ++K GL+K D LGL L+++ ++L+++AQ G K++L+ Sbjct: 529 IVPLQRTTKDENALMAAFEGPTLQKMGLLKMDVLGLTNLSVVAEALEYIAQTTGRKMELA 588 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD + + L+ T +FQLES GM + L ++P +ED+ A+V+LYRPGP++ I Sbjct: 589 DIPLDDPKVFEALSRGETTNVFQLESPGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQIP 648 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 VY + KN + I +HP++ P+L++T GVI+YQEQ+M++ Q ++ Y+L +A ++ +A+ K Sbjct: 649 VYIHNKNNPQDIKYLHPILKPILEDTYGVIVYQEQIMRLLQEVADYTLGQAYIVIKAISK 708 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ M + + +F G + G+++ A +++L+ FA Y FN+ H+ Y ++SYQTAW+ Sbjct: 709 KDKKLMAENEVKFKQGCLRKGLTQEQADQLWDLILPFAGYSFNRPHSTLYGLLSYQTAWL 768 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----- 834 K +YPVE++AA + E I K + RQ + ++ P +N +DF + + R Sbjct: 769 KVNYPVEYMAAVLKGAGGVTEDIAKAVNECRQRGVPVLGPDINASALDFTIREFRDPSDG 828 Query: 835 -----IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I + LAAIK VG I+ E A+ PF SL+D C RVD LN+RVLESL+ A Sbjct: 829 QIRRGILFGLAAIKNVGAGPIEAILRERDANGPFRSLDDLCERVDRHALNKRVLESLIKA 888 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD +R Q L LD + +KNR ++F + I+ N Sbjct: 889 GALDPLPGTRRQKLAILDTALEAGARAQKNRETGQIDMFGNIVADTDASISAIPLPTINE 948 Query: 949 SVRFENEQ-----RVLGFYFSGHPLDV 970 + EQ +LG FS P V Sbjct: 949 TPDDRKEQLAWEKELLGVVFSSDPRKV 975 >gi|302550775|ref|ZP_07303117.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces viridochromogenes DSM 40736] gi|302468393|gb|EFL31486.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces viridochromogenes DSM 40736] Length = 1179 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 355/1076 (32%), Positives = 556/1076 (51%), Gaps = 72/1076 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMSHIAMSDHGNLHGAYDFFHTAQKAGVT 63 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117 PIIG + + + + N + G+ P + + + G L L S Sbjct: 64 PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFRLSS 122 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Y ++ R+ + + +EG++ TG SG + A K ++ + Sbjct: 123 DAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQDI 181 Query: 178 FG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ + Sbjct: 182 FGKDRYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEASAHDALLCIQ 241 Query: 236 HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA-PI 291 +S DR R +YLK+ EM +I S E NT IA + Sbjct: 242 TGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLIAEMVDTTGMFEKRDL 301 Query: 292 LPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P+F DI + E + R + + G+ R G D +++++E++ I Sbjct: 302 MPKF------DIPEGYTEVSWFREETLRGMHRRFPDGI------PDDRMKQVEYEMDTII 349 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F GYFL+VADFI WAKK I VGPGRGS AGS+ AYAL ITD+DP+ L+FERFLN Sbjct: 350 SMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFLN 409 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G+++AK A++D R L PY Sbjct: 410 PERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPY 469 Query: 470 SQVDRLCKLIPND-------------PAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516 + DRL K +P D P HP +A R +P V ++++ ++ Sbjct: 470 AMGDRLTKAMPADVLGKGINLDGITNPEHPRYSEA----GEIRAMYENEPDVKKVIDTAK 525 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +EGL R HAAG+++ ++ VP++ + +TQ++ E GL+K DFLGL Sbjct: 526 GVEGLVRQMGVHAAGVIMSSETITDHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGL 585 Query: 577 KTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT++ ++ + + +G+ +DL +P DD T+ LL TLG+FQ + MR L M Sbjct: 586 RNLTIMDDAVKMVKSNKGIDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLM 645 Query: 636 QPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVI 689 +PD EDI A+ +LYRPGP +++ Y RKNG+++I IHP ++ L+E T G+I Sbjct: 646 KPDNFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLREVLDVTHGLI 705 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQV + AQ+++GYSL EAD+LRR MGKK EE+ K F GA K G S + Sbjct: 706 VYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQEGARKKGFSDEAIQAL 765 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 +++L FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T D+ +K + + Sbjct: 766 WDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNEC 825 Query: 810 RQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867 R+ I+++PP VN +F GD+ I + L+A++ VGT I+ A + S D Sbjct: 826 RRMGIKVLPPDVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIRCRKAKGKYVSFPD 885 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 + +V++ N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 886 YLDKVEAVVCNKRTTESLIKAGAFDAMGHTRKGLTAHYEPMIDNVVAVKRKEAEGQFDLF 945 Query: 928 AHEKGTFSDKITLEKFSVE--------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 G D+ + F ++ + + E+ +LG Y S HPL + IL Sbjct: 946 G---GMGEDESSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLEHILSDKA 1002 Query: 980 IKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + G+ + + ++ Q+K T++G+ T + A E FFP Sbjct: 1003 DAGISQLTGGDYSDGSVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|317503779|ref|ZP_07961791.1| DNA-directed DNA polymerase III alpha subunit [Prevotella salivae DSM 15606] gi|315665076|gb|EFV04731.1| DNA-directed DNA polymerase III alpha subunit [Prevotella salivae DSM 15606] Length = 1235 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 373/1114 (33%), Positives = 571/1114 (51%), Gaps = 101/1114 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-------QKAC 63 F+HL VH+ YS+L+G ++ ++DK + +A+TD +F EF+ +K Sbjct: 4 FIHLHVHTYYSILDGQSKISRLVDKAVENGMKGMALTDHGVMFGIKEFADYCAGVNKKRK 63 Query: 64 AAGIQP---IIGCQLDI---DMQDNLKM--TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 A G++P I GC++ + + D +K N G +++L GY+ LI+L Sbjct: 64 AEGLEPFKPIFGCEMYVAHHRLHDKVKEHGDNSGY-------HLIVLAKNYNGYKNLIKL 116 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 VS+ ++ D R + L++ E LI+ + +G + + A + + Sbjct: 117 VSKSWI-DGYYYRPRTDRTELEKY-HEDLIVCSACIAGEVPSKIIKGDLEGAREACEWYH 174 Query: 176 KLFGDRLYVNLQRHRGYD----RYRES---------QVVQLAYTHELPLVATNNSLFLSE 222 ++FGD Y+ LQRH D RE+ +++ A + + ++ TN+ F + Sbjct: 175 RVFGDDYYLELQRHEVKDPTILANREAFPLQQKANKVLLEFAKEYGIKVICTNDVHFEDK 234 Query: 223 EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282 E EAHD L+ ++ + +R R + + K+R EM +FSD+PEAL NT+EI + Sbjct: 235 ETAEAHDHLLCLSTGKDLDDPNRMRYSKQEWFKSREEMNEVFSDVPEALTNTLEILNKVE 294 Query: 283 FILQVHAPILPRF-------IEKECD------DIQKE------EENEL------------ 311 H PI+P F E+E D+ KE EN+L Sbjct: 295 HYSIEHGPIMPFFPIPESFGTEEEWKLKFSEADLYKEFTSDENGENQLSPEEGQKVIERL 354 Query: 312 -------RNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVA 361 R K A +LA K Y + ++ ++FEL+V+ M F GYFLIV Sbjct: 355 GGYDKIYRIKFEADYLAKLAHDGAKKLYGDPIPSNVQEHINFELHVMKTMGFPGYFLIVQ 414 Query: 362 DFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI A+ ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D Sbjct: 415 DFINAARTELDVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDT 474 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF D R +V+R+V +KYGHE A IIT+ S+ K +++DV R ++P + + LCK IP Sbjct: 475 DFDDDGRGKVLRWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLDKSNFLCKAIP 534 Query: 481 NDPAHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGD 536 + + + AI R+A ++ +R ++ ++ LEG R HA G +I Sbjct: 535 DRLPDGLKMNLTNAIKCTPELRDAEVSQDLRERNTIKYAKMLEGTVRGTGIHACGFIICR 594 Query: 537 RPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 P+S VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + + Sbjct: 595 DPISNWVPVSTADDPDYPGFKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKK 654 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + + VDL IP DD TY L T+G FQ ES GM++ L + P ED+IA+ +LY Sbjct: 655 TKNIDVDLDTIPIDDELTYQLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNALY 714 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RKN ++ P ++ LK+T G+ +YQEQVM +++ L+ ++ E+ Sbjct: 715 RPGPMDYIPDFIKRKNDPTQVSYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGES 774 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D LR+AMGKK K +D K +FI ++NG I I+ KFA Y FNKSHA Y+ Sbjct: 775 DALRKAMGKKKKAIVDAMKPKFIKQGTENGHDPKILEKIWGDWEKFASYAFNKSHATCYS 834 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++YQTA+MK H+P E++AA MT + +I K ++ + I + P VN +F V Sbjct: 835 WVAYQTAYMKAHFPAEYMAALMTRRFSQITEITKLMEECQSMKIATLGPDVNESYSEFGV 894 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I + L+AIKG+G A+ I+ E A+ PF + DF R+D +NR+ ESL + Sbjct: 895 NKRGEIRFGLSAIKGMGEMAAQSIVKEREANGPFKDIYDFAQRIDFSNVNRKAFESLALS 954 Query: 889 GALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 G D F Y R Q LD + +Y Q ++ + ++F E + Sbjct: 955 GGFDGFEYRREQYFAPGMKGDVFLDTLVRYGQLYQQEQREARNSLFGGESAVEISRPIPG 1014 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE---SVATIRGNNIRLA 998 KF ++ R E+ ++G Y S HPLD Y IL+ + E ++ I + Sbjct: 1015 KFEEWSTIERLNRERDLVGIYLSAHPLDEYGVILKSLCNTHCTELDKKEELVKKEEISIG 1074 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V + K T+ G G+VT + E FF Sbjct: 1075 GIVTGVKSKFTKTGKPCGFVTIEDFEGSGELAFF 1108 >gi|302518507|ref|ZP_07270849.1| DNA polymerase III subunit alpha [Streptomyces sp. SPB78] gi|302427402|gb|EFK99217.1| DNA polymerase III subunit alpha [Streptomyces sp. SPB78] Length = 1181 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 362/1079 (33%), Positives = 566/1079 (52%), Gaps = 74/1079 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K+P F HL VH+ YSLL+GA L ++ IA++D NL A +F +A AG Sbjct: 4 KTP-FTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKKAG 62 Query: 67 IQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIEL 115 + PIIG + + + + N + G+ P + + + + G L +L Sbjct: 63 VTPIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTIWAANSTGLHNLFKL 121 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S Y ++ R+ + + +EGLI TG SG + + A K ++ Sbjct: 122 SSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADYQ 180 Query: 176 KLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 +FG DR ++ L H G D R R+ ++++ +P + TN+S + + AHD L Sbjct: 181 DIFGKDRYFLELMDH-GIDIEHRVRDG-LLEIGKKLGIPPLVTNDSHYTYAHESVAHDAL 238 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVH 288 + + +S DR R +YLK EM +I S E NT+ +A + Sbjct: 239 LCIQTGKNLSDPDRFRFDGTGYYLKTTDEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFE 298 Query: 289 A-PILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 ++P+F I +I +E R G+E R G D +++ ++E++ Sbjct: 299 KRDLMPKFEIPDGFTEITWFQEEVRR-----GMERRYPAGV------PDDRQKQAEYEMD 347 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FER Sbjct: 348 VIIQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFER 407 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L Sbjct: 408 FLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLG 467 Query: 467 MPYSQVDRLCKLIPND-------------PAHPVSLQAIADDSRFREARLADPSVDRLLE 513 PY+ DR+ K +P D P HP +A R +P V ++++ Sbjct: 468 YPYAMGDRITKAMPADVLGKGIDLDGITNPTHPRYSEA----GEVRGMYENEPDVKKVID 523 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 ++ +EGL R HAAG+++ P+ P++ ++ +TQ++ E GL+K DF Sbjct: 524 TAKGVEGLVRQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDF 583 Query: 574 LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ LT++ ++ + + +G ++DL I DD +TY LL TLG+FQ + MR L Sbjct: 584 LGLRNLTIMDDAVKMVKSNKGRELDLLAIQLDDPKTYDLLCRGDTLGVFQFDGGPMRSLL 643 Query: 633 EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQ 686 M+PD EDI A+ +LYRPGP +++ Y RKNG+++I IHP ++ LKE T Sbjct: 644 RLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTY 703 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK +E++K F +GA KNG S Sbjct: 704 GLIVYQEQVQKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAI 763 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 ++++L FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + Sbjct: 764 QALWDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYL 823 Query: 807 QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864 + R+ I+++PP VN +F GD+ I + L A++ VG I+ + A + S Sbjct: 824 NECRRMGIRVLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYAS 883 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 D+ +V++ N+R ESL+ AGA D G++R L + + V++ Sbjct: 884 FPDYLDKVEAVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQF 943 Query: 925 NIF--------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F E G F +T E S + E+ +LG Y S HPL + +L Sbjct: 944 DLFGGMGDDDGKDEPG-FGLDVTFGDDEWEKSYL-LAQEREMLGLYVSDHPLFGLEHVLS 1001 Query: 977 KMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + G+ + + ++ Q+K T++G+ T + A E FFP Sbjct: 1002 DKADAGIGQLTGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060 >gi|307331654|ref|ZP_07610761.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu 4113] gi|306882680|gb|EFN13759.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu 4113] Length = 1181 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 358/1076 (33%), Positives = 557/1076 (51%), Gaps = 70/1076 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F Q+A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMTDHGNLHGAYDFYQQATGAGVT 63 Query: 69 PIIGCQLDIDMQDN-LKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118 PIIG + + + K Q P + + + G L L S Sbjct: 64 PIIGIEAYVAPESRRYKRRVQWGQPHQKRDDVSGSGGYTHKTIWAADKTGLHNLFRLSSD 123 Query: 119 MYL----LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 Y+ + + W +EGLI TG SG + A K + Sbjct: 124 AYMEGYFVKWPRMDKETIAQW-----SEGLIASTGCPSGELQTRLRLGQFDEAVKAASEY 178 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIEIERRVRDGLLEVGKKLGIPPLVTNDSHYTYSRESVAHDALL 238 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA 289 V +S DR R +YLK+ EM +I S E NT+ +A + Sbjct: 239 CVQTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCRNTLLVAEQIDATGWFEK 298 Query: 290 -PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 ++PRF E + E+R G+ R G +D ++ ++E++VI Sbjct: 299 RDLMPRFDVPEGYTEVTWFQEEVRK----GMARRFPGGV------PEDRQKLAEYEMDVI 348 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F GYFL+VADFI WAK N I VGPGRGS AGS+ +YA+ ITD+DP+ L+FERFL Sbjct: 349 IQMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYAMGITDLDPVEHGLIFERFL 408 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD DIDF + RR EVIRYV KYGH++VAQI T+G+++AK A++D R L P Sbjct: 409 NPERVSMPDVDIDFDERRRGEVIRYVTEKYGHDKVAQIGTYGTIKAKNAIKDSARVLGYP 468 Query: 469 YSQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLE 519 Y+ DR+ K +P D + L I D+ R+ EA +P V ++++ ++ +E Sbjct: 469 YAMGDRITKAMPADVLGKGIPLSGITDEKHPRYSEAGEVRGMYENEPDVKKVIDTARGIE 528 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R HAAG+++ ++ VP++ VTQ++ E GL+K DFLGL+ L Sbjct: 529 GLVRQMGVHAAGVIMSSETVTDHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNL 588 Query: 580 TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ ++ + A +G+ + + + DD +T+ LL TLG+FQ + MR L M+PD Sbjct: 589 TIMDDAVKMVRANKGIDLKMLDLSLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRMMKPD 648 Query: 639 CIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692 EDI A+ +LYRPGP +++ + Y RKNG+++I IHP ++ LKE T G+I+YQ Sbjct: 649 NFEDISAVSALYRPGPMGMNSHINYALRKNGQQEITPIHPELEEPLKEVLGITHGLIVYQ 708 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQV + AQ+L+GYSL +AD+LRRAMGKK +E +DK+ F G S ++++ Sbjct: 709 EQVQKAAQVLAGYSLGQADLLRRAMGKKKQEVLDKEFVPFQKGMRDRDYSDQAIQAVWDV 768 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 769 LVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRM 828 Query: 813 NIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCS 870 I+++PP+VN +F GD+ I + L A++ VG I+ A + S D+ Sbjct: 829 GIKVLPPNVNESEANFTAQGDDVILFGLTAVRNVGQNVVEAIIRGRKAKGKYASFPDYLD 888 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AH 929 +V++ N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 889 KVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYEALIDNVVAVKRKEAEGQFDLFGGM 948 Query: 930 EKGTFSDKITLEKFSVENSSVRFE------NEQRVLGFYFSGHPLDVYKPILRKM----- 978 + VE S V +E E+ +LG Y S HPL + +L + Sbjct: 949 AGDGGDGEGPGFGLDVEFSDVEWEKTYLLAQEREMLGLYVSDHPLFGIEHVLNEKADAAI 1008 Query: 979 -GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G E + I + + ++ Q+K T++G+ T + A E FFP Sbjct: 1009 SALTGGEHADGAI----VTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060 >gi|295107511|emb|CBL05054.1| DNA polymerase III, alpha subunit [Gordonibacter pamelaeae 7-10-1-b] Length = 1154 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 355/1060 (33%), Positives = 572/1060 (53%), Gaps = 68/1060 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN------NLFSALEFSQKAC 63 +FVHL H+ YSLL+G + +++ + A PA+AI+D L + ++ Sbjct: 2 AFVHLHNHTEYSLLDGHTHIYDMVKRAADLGMPAVAISDHGVMSGVPQLCEMCDKVEEET 61 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 ++PI GC++ + LK GK P + ++LL T EGY L++LVS ++ D Sbjct: 62 GKRVKPIYGCEVYFTTDEELK--RDGK---PKLYHLLLLAKTNEGYHNLVKLVSESHV-D 115 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI----DRAFFFNSSQVAEKRLLTFKKLFG 179 R S LQ+ G +G+I + +G I D F ++ A K F+ G Sbjct: 116 NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPKLLDNRQFDDAVAWANKFASCFEP--G 172 Query: 180 DRLYVNLQRH-----RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 D Y+ LQ G+ + + ++ +A L +ATN+ +L++ED +A D ++ Sbjct: 173 D-FYIELQNQGIRTDAGFTQTELNHMLTDVARAAGLKTIATNDFHYLTKEDAKAQDYMLC 231 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA V+ + R R + D Y+K+ EM D PEA + TVE+A + +L+ + IL Sbjct: 232 VAQGAAVNDEKRMRFSNDEFYMKSEEEMREALKDFPEACDTTVEVAEKVDVVLERDS-IL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIA 349 PRF E + EE+ R R Q + K Y + Q+ ++R D+E+ +I Sbjct: 291 PRFPLPEGE----TEESYFR---------RRVQEGLVKHYGSPVPQEAQERADYEMGIII 337 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 + F YFLIV ++I+WA+ I VGPGRGS AG++ AYA+ IT +DPL LLFERFL+ Sbjct: 338 QQGFPAYFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLS 397 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+ MPD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD R L PY Sbjct: 398 PERVEMPDIDVDFEQGRREEVINHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPY 457 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 + DR+CKLI ++ + +A+A + ++A + V +++ ++ +EG R HA Sbjct: 458 NTGDRICKLIGDELGITID-KALATNPDLKKAYETEEDVKAVIDAAKSIEGHVRGEGVHA 516 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 +I P++ VPM RD + +TQ++ + + GL+K DFLGL+TL +L + + Sbjct: 517 CATIICRDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLSIACRNV 576 Query: 590 AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 QR G KV IP DD + L+ + G+FQ+E + + P DI+A ++ Sbjct: 577 EQRFGTKVVPEEIPIDDEAAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIA 636 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 L RPGP+++ +V Y +GK +I + P+L+ET G ++YQEQ+MQI+ +SG+S Sbjct: 637 LNRPGPLESGMVDDYVKVASGKTQIHYYDDRLRPILEETYGTMVYQEQIMQISMAMSGFS 696 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 +AD LR+AMGKK + M +E + +GA +NG S IA I+E KFA Y FNKSH+ Sbjct: 697 AGKADKLRKAMGKKKLDVMRALQEDWNTGAVENGFSLAIAKQIWEDAEKFAKYAFNKSHS 756 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++ +TA++K HYP +F+AA ++ M N +++ ++ ++PP +N+ Sbjct: 757 AAYAILVMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHNGTPVLPPDINSSNA 816 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 +F D+ I + L ++GVG A I+E A+ P+ SL DF +R+D+K NR+ LE+L Sbjct: 817 EFTPTDDGIRFGLVGVRGVGANVAEAIIEEREANGPYTSLHDFVNRLDAKCYNRKTLEAL 876 Query: 886 VFAGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLE 941 + GA D GY+R QL+ +D + + A +K+R ++F F D E Sbjct: 877 IKGGAFDSTGYTRKQLMYFVDETPLLESASKRQKDRDRGQVSMF----DLFGDDPDSGFE 932 Query: 942 KFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRG 992 + E V + E+ ++ Y S HPL Y+ + +M + E I+ Sbjct: 933 EEVPEPDGVEWPKRQLLSYEKEIMKIYVSDHPLRPYEGTIARMTKFQLGDLAERTKEIK- 991 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + M+ + K T++G+++ T + E F Sbjct: 992 -SATFVGMISTVVTKLTKRGTKMATFTLEDTTGHIECICF 1030 >gi|116333410|ref|YP_794937.1| DNA polymerase III, alpha subunit [Lactobacillus brevis ATCC 367] gi|116098757|gb|ABJ63906.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus brevis ATCC 367] Length = 1121 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 366/1045 (35%), Positives = 559/1045 (53%), Gaps = 81/1045 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV LQV S+YSLL+ +++++ A+A+ D N ++ A+ F A I+P+ Sbjct: 2 FVPLQVFSTYSLLQSTNRIDDLVQTAKKRGYTALALADKNVMYGAVAFYNACRQADIKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G L +T QG V L GYQ+L++L S Y + G Sbjct: 62 LG----------LTLTAQGLNDATQAYDWVFLAQNFTGYQQLMQL-STAYQVGGGP---- 106 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF---GDRLYVNLQ 187 + L+ L T+ L LT P+D + VA +L +++ D L Sbjct: 107 VDLTQL----TKNLSQLT--MIAPLDSEI---HTLVANDQLAPAQQILHQLNDWSVGQLA 157 Query: 188 RHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKD 244 D S+ + L+ PLVA + +L+ +D+ A VL A+ A T+ Sbjct: 158 IGVSPDLTAVSRDHLQSLSQATTTPLVALSPVAYLNRDDHFAVTVLRAIDAGETISDPTT 217 Query: 245 RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +V H+L+ +E F++ L A+ T IA + V + + Sbjct: 218 EQQVQGTHWLRPAAEETQRFANVGLTAAVTMTASIAAAST----VTLQFQQPQLPQFPTP 273 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 Q+ + LR + VAGL+ RL I A Y+QRLD EL VI RM F YFLI+ D Sbjct: 274 NQENSRDYLRERCVAGLKRRLTANHITD---ATPYQQRLDHELGVIHRMGFDDYFLIIWD 330 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 + +A + NI GPGRGS AGS+ AY L IT++DPL + LLFERFLN +R MPD D+D Sbjct: 331 VMNFAHQANIQTGPGRGSAAGSLVAYVLAITEVDPLAYDLLFERFLNEERAQMPDIDLDI 390 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 +RR++V++YV +KYGHERVAQIITFG+L AKAALRDVGR L M ++ IP + Sbjct: 391 PDNRREQVLQYVHDKYGHERVAQIITFGTLAAKAALRDVGRVLGMAPYELSDWSAAIPAE 450 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 H ++LQ D S+ +AD S ++LL +QKLEGL RH STHAAGIV+ +PL Sbjct: 451 -LH-ITLQRAYDQSQRLRNLVADSSRNQLLFATAQKLEGLPRHYSTHAAGIVLSQKPLRD 508 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600 LVP+ + +L +TQ+ +E GL+K DFLGL+ L++L +L + Q G VDL+ Sbjct: 509 LVPL-QPGSEELLMTQYPKDTVEAVGLLKMDFLGLRNLSILANALALVKKQTGKIVDLNQ 567 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I +D T L T T G+FQ ESSG+++ L +QPD E + A+ +LYRPGP++NI Sbjct: 568 IDLNDPATLKLFATGETNGVFQFESSGIKRVLRQLQPDSFELVAAVNALYRPGPMENIDT 627 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RKNG+E + + P+L T GV++YQEQVMQ+A ++ G++L +AD+LRRAM KK Sbjct: 628 FIRRKNGQEPVTYPADALAPILGPTYGVLVYQEQVMQVASVMGGFTLGQADLLRRAMSKK 687 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K+ MD +++F++GA + G +A +F + +FA+YGFN+SHA AY+ +++Q A++K Sbjct: 688 KKQTMDAMQKQFVAGAQQRGYELAVAQRVFAYIDRFANYGFNRSHAVAYSKLAFQLAYLK 747 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYP F A+ M ++ K K + +A++ + ++PP +N F + + I + L+ Sbjct: 748 AHYPAAFYASLMNSVINVGAKTKVYLTEAKRHGVTVLPPDINRSTAYFNLYHSAIIFGLS 807 Query: 841 AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 +IKGV R ++ E PF L F R+ SK +L +LV+AGA D FG++R Sbjct: 808 SIKGVRRDFLREVLAERHEHGPFKDLHQFLERIASKYRKADLLNALVYAGAFDHFGHNRA 867 Query: 900 QLLQSL-----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 +L+ +L DN++ A K ++ ++ Sbjct: 868 ELIAALPEFISSVELSGDNVELIAALAPKIKSQPDLDLM--------------------- 906 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E+ VLG Y SGHP++ Y+ + R++ + E A R + + V+ +Q + Sbjct: 907 -TKLSQEEAVLGAYLSGHPVEQYQQLGRQLQAQAVSELTANTR---VTVLLYVIKIRQIR 962 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 T++G + +VT S+ + FP Sbjct: 963 TKRGEPMAFVTGSDETADVSVTIFP 987 >gi|81428645|ref|YP_395645.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus sakei subsp. sakei 23K] gi|78610287|emb|CAI55336.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus sakei subsp. sakei 23K] Length = 1110 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 357/1030 (34%), Positives = 568/1030 (55%), Gaps = 52/1030 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV LQV S+Y+LLE + +++ A ++A+TD N ++ ++F + A AA I+P Sbjct: 2 AFVQLQVKSTYTLLESTTKITDLVTAAKARGYQSLALTDKNVVYGLVDFYKAAKAADIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G +++ L T++ FP ++LL GYQ ++++ +++ QS Sbjct: 62 LLGITIEVG---GLIQTDER---FP----LILLAKNLTGYQNILKISTKIM-----TQSE 106 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188 + +Q + + L+++T G + R N + A+ + K + D LY+ + Sbjct: 107 LVPFEAVQSL-LQQLVVITPSQDGELVRLLLQNDATAAQTYIERLKAVVDADSLYLGISA 165 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + R R + QL+ +PLVA + +L ED A VL + T V+ + P+ Sbjct: 166 KQAASRQRVP-LGQLSQQTAVPLVALGDVRYLEPEDAFAVQVLQHIKAGTQVNLQT-PQA 223 Query: 249 TPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 ++L++ + + F L EA+ NT +IA +C L LP+F + Sbjct: 224 PGGYFLEDVQQATAAFEALQLAEAVANTQKIAAQCQVDLSFKRAQLPQFETPAG----QS 279 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L+ ++ AGL+ R I + Y+ RLD+EL VI M F+ YFLIVAD +Q+ Sbjct: 280 AATYLKQQSQAGLQARFKTQPIP-----ETYQTRLDYELQVINEMGFADYFLIVADVMQY 334 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A + NI GPGRGS AG++ AYAL ITD+DP+R+ LLFERFLNP+R +MPD D+D +R Sbjct: 335 AHQQNIMTGPGRGSAAGALVAYALRITDVDPIRYQLLFERFLNPNRANMPDIDLDIPDNR 394 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEV+ YV KYG +AQIITFG+L AK AL+DVGR + ++ K IPN Sbjct: 395 RDEVLDYVYQKYGQNHMAQIITFGTLAAKMALKDVGRVFGLSQFEMSAWSKAIPN--VLK 452 Query: 487 VSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++LQ D S+ + +AD +RLL E +Q++EGL RH STHAAGIV+ PL++ V + Sbjct: 453 ITLQEAYDQSQAFKNLVADSQQNRLLFETAQRIEGLPRHYSTHAAGIVLSQAPLTETVAL 512 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 + ++ +TQ M +E+ GL+K DFLGL+ L +L + ++Q+ G + IP D Sbjct: 513 -QSGGDEIELTQLPMGNVEELGLLKIDFLGLRNLGILANIVKLVSQQTGQPFNPQNIPLD 571 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D T L T GIFQ ES+G++ L ++P EDI+A +LYRPGP++NI + +R Sbjct: 572 DPATLALFQQGDTNGIFQFESTGIKNVLRRLKPTSFEDIVATDALYRPGPMENIDTFIDR 631 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK + + +L+ T G+++YQEQVMQ A + G++L EAD+LRRAM KK K Sbjct: 632 KSGKVPVTYPDDSLAEILQPTYGILVYQEQVMQAASKMGGFTLGEADILRRAMSKKKKAV 691 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D + +FI GA G ++ A +++ + +FA+YGFN+SHA AY+ I++ A++K H P Sbjct: 692 IDASRTKFIEGALALGHTEQAATTVYDYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHQP 751 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 F AA + ++ K K + +A++ + ++PP +N FKV D I + L +IKG Sbjct: 752 EAFFAAVLNAVLNQGTKTKTYLAEAKKRQLSVLPPDINLSQRYFKVTDAGIIFGLYSIKG 811 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + I+ E PF S+ F R+D+K L + L +L+++GA D F +R LL Sbjct: 812 LRRDFVAAILDEHQTGGPFKSVLQFLQRLDAKYLKKEALVALIYSGAFDQFNPNRNALLM 871 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +LD++ + N + I A ++ T S+ +TL + R + E LG Y Sbjct: 872 NLDDLLDSVKLAGDNMS--LFEILAPKEKTVSN-LTLTE--------RLDKEAEYLGAYL 920 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP++ Y+ + R + V+ + N N+RL V + +T+KG ++ +VT + Sbjct: 921 SGHPVEKYERVRRYYHVP----EVSDLAPNQNVRLVLFVRRIKVIRTKKGEQMAFVTGQD 976 Query: 1023 PAKEYEANFF 1032 E F Sbjct: 977 ATGEISVTLF 986 >gi|212693673|ref|ZP_03301801.1| hypothetical protein BACDOR_03193 [Bacteroides dorei DSM 17855] gi|237708836|ref|ZP_04539317.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA] gi|237724269|ref|ZP_04554750.1| DNA polymerase III alpha subunit [Bacteroides sp. D4] gi|265755905|ref|ZP_06090372.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_33FAA] gi|212663785|gb|EEB24359.1| hypothetical protein BACDOR_03193 [Bacteroides dorei DSM 17855] gi|229437457|gb|EEO47534.1| DNA polymerase III alpha subunit [Bacteroides dorei 5_1_36/D4] gi|229457262|gb|EEO62983.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA] gi|263233983|gb|EEZ19584.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_33FAA] Length = 1265 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 364/1144 (31%), Positives = 595/1144 (52%), Gaps = 131/1144 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 FVHL VH+ YS+L+G S+ ++DK AD IA+TD ++F EF Sbjct: 4 FVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSSTN 63 Query: 61 ------KACAAGIQ-----------------------------PIIGCQLDIDMQDNLKM 85 K AG++ PI GC++ + + ++ Sbjct: 64 GEIKDLKKRIAGLEKGTVECDNPEAELVACKEKLEAAKRKLFKPIFGCEMYVARR---RL 120 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--LDQGKQSVRICLSWLQEIGTEG 143 N+ P + +V+L +GY LI+LVS+ + ++ R+ L E EG Sbjct: 121 FNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWTEGFYMRPRTDRVEL----EKYHEG 176 Query: 144 LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYRE 197 LI+ T +G + R + AE+ + +K++FGD Y+ LQRH+ ++ Y+ Sbjct: 177 LIVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKL 236 Query: 198 SQV-----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 Q+ ++ + + LV TN+ F+ EE+ EAHD L+ ++ + +R + Sbjct: 237 QQIANEKLIEYSRKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQE 296 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP----------------RFI 296 ++K R+EM +F+D+PEAL NTV+I + F HAPI+P ++ Sbjct: 297 WMKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYT 356 Query: 297 EKECDD----------IQKEEENELRNKAVAG--------LEVRLAQGAIAKGYHA---- 334 EK+ D + EE + + + + G LE + +G H Sbjct: 357 EKDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE 416 Query: 335 ---QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYAL 390 ++ ++R+ FEL+++ M F GYFLIV DFI+ A++ ++ VGPGRGS AGS AY L Sbjct: 417 VLNEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSAVAYCL 476 Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450 IT IDP+ + LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA IIT+G Sbjct: 477 GITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAHIITYG 536 Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSL-QAIADDSRFREARLA-DPS 507 ++ K A++DV R ++P S+ DRLCKL+P+ P ++L AIA + A ++ DP Sbjct: 537 TMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLTNAIAYVPELQAAEVSPDPI 596 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWI 563 + ++ ++ LEG R+ HA G +I ++ VP+ ++ + VTQ+ I Sbjct: 597 LRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVI 656 Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622 E GLIK DFLGLKTL++++++++ + +G+ +D+ + D TY L + T+G FQ Sbjct: 657 EDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRTIGTFQ 716 Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682 ES+GM++ L ++P ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ L Sbjct: 717 FESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYL 776 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 K+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 777 KDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHD 836 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + N+ +I Sbjct: 837 PKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNISNITEI 896 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEA-SA 858 K +++ I P VN + F V GD I + L AIKGVG + + I+E Sbjct: 897 TKLMDESKATGIMTKGPDVNESYLKFSVNRKGD--IRFGLGAIKGVGESAVQSILEERER 954 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQK 910 + + + DF RV+ NR+ +E+L AGA D F G R + + + Sbjct: 955 NGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEVLVR 1014 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 Y + ++ ++F E + R E+ ++G Y S HPLD Sbjct: 1015 YGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHPLDE 1074 Query: 971 YKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y IL + E + ++ ++ + +V + ++ T+ G G + + E Sbjct: 1075 YAVILENVCNVHMAELADLTPLQNRDLTMGGIVSAVREGYTKTGKPYGIAKVEDYSGSAE 1134 Query: 1029 ANFF 1032 FF Sbjct: 1135 FAFF 1138 >gi|219849373|ref|YP_002463806.1| DNA polymerase III subunit alpha [Chloroflexus aggregans DSM 9485] gi|219543632|gb|ACL25370.1| DNA polymerase III, alpha subunit [Chloroflexus aggregans DSM 9485] Length = 1260 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 370/1059 (34%), Positives = 549/1059 (51%), Gaps = 56/1059 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G + I+ + A +IA+TD L+ A+EF + A AGI+PI Sbjct: 4 FVHLHVHSEYSLLDGYATTKGIVQRAADLGMDSIALTDHGVLYGAMEFYEAAKKAGIRPI 63 Query: 71 IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK- 126 IG + I + D MT K F ++LL GY+ L++L +R +L GK Sbjct: 64 IGVEAYIAPGSLSD--PMTKGAKNYF----HLLLLAQNETGYRNLVKLTTRAHLDGMGKG 117 Query: 127 --QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI L E EGLI+ + +G + A + ++ L G DR Y Sbjct: 118 VFARPRIDRHLL-ETYHEGLIVTSACVAGELLHHLKHGDRHTAVETAAYYRDLLGPDRYY 176 Query: 184 VNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQ H ++V++A +PLVAT+++ F+ ED E +MA+ + + Sbjct: 177 IELQLHDNTPELEPLNDELVRIARELGIPLVATSDAHFIHPEDKETQHKVMAMGMNMTYA 236 Query: 242 QKDRPRVTPD--HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEK 298 + D +++ + M + F E LENT I+ C L+ LP F Sbjct: 237 EFCTRGYAMDESYHIMSGEAMWARFKRYGTEPLENTRRISDMCRLKLEFGRVQLPVFELP 296 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E D + LR GL R G + Y +RL++EL+VI + F Y L Sbjct: 297 EGHDAA----SYLRLVCEEGLMRRF------NGQPPETYLRRLEYELDVINQTGFPDYML 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV D++++A+ IP P RGS S+ YAL ITD+DP++ LLFERFL+P+R+ MPD Sbjct: 347 IVWDYVKFARSRGIPCLP-RGSAGASLVLYALGITDVDPVKNKLLFERFLSPERLEMPDI 405 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF RR E++ Y+ NKYG E VAQIIT+G+L AKAA+RD+GR L + +VDR+ KL Sbjct: 406 DTDFADSRRQEILDYIANKYGRENVAQIITYGTLGAKAAIRDMGRVLGLDPGEVDRVAKL 465 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+ P QAI ++ P + LL +QK+EG R THA G+V+ P Sbjct: 466 IPSLPVGTTIAQAIERVPELKQIYETQPHLRELLIEAQKVEGRMRSVGTHACGVVVSRTP 525 Query: 539 LSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596 L +LVP+ R + + + F + K GL+K D LGL L+++ ++L ++ Q G ++ Sbjct: 526 LEELVPLQRTTKDEHALMAAFEGATLAKMGLLKMDILGLTNLSVVAEALKYIEQTTGRRM 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 L IP DD + + L T +FQLES+GM + L +QP +ED+ A+V+LYRPGP++ Sbjct: 586 WLDEIPLDDPKVFAALGRGETKNVFQLESAGMTRYLMQLQPTRVEDLYAMVALYRPGPLE 645 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I VY K+ +I +HP+++P+L +T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A Sbjct: 646 QIPVYIQNKHNPSQIRYLHPVLEPILSDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKA 705 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 + KK KE M + + F G + GISK +A ++EL+ FA Y FN+ HA Y ++SYQT Sbjct: 706 ISKKNKELMAENEAIFKQGCQRKGISKEVADQLWELILPFAGYSFNRPHATLYGLLSYQT 765 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----- 831 AW+K +YPVE++ A +T +E + K +AR+ + ++PP VN F + Sbjct: 766 AWLKVNYPVEYMTAVLTGAGGVIEDVTKAALEARRLGVAVLPPDVNRSHKGFTIEPLSPP 825 Query: 832 -------DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLE 883 D I + L AIK VG I+ A A PF SLED C+RVD LN+R LE Sbjct: 826 LPEGVKYDRGIRFGLMAIKNVGEGPVEAIIAAREAGGPFRSLEDLCARVDRHALNKRTLE 885 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDK---- 937 SL+ AGALD SR Q L LD +K R ++F E T S Sbjct: 886 SLIKAGALDSLPGSRRQKLAILDQAINAGVEAQKARDIGQSSLFDIFGESNTGSPNVARI 945 Query: 938 ---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 I E + + +R+E E +LG S P+ + G+ G Sbjct: 946 PLPIITETPAEQKEVLRWEKE--LLGLNLSDDPIAKALEGIDLTGVTDLGSLEEEHVGET 1003 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ ++ T+KG + T + E FP Sbjct: 1004 LTFVGVLSGVRRIATKKGDSMVVATLEDMTGSIEIVVFP 1042 >gi|302526214|ref|ZP_07278556.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4] gi|302435109|gb|EFL06925.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4] Length = 1174 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 365/1075 (33%), Positives = 568/1075 (52%), Gaps = 69/1075 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSFVHL VH+ YS+L+GA + + + A PA+ +TD N++ EF Q + GI+ Sbjct: 2 PSFVHLHVHTEYSMLDGAAKIGPLFAEAARLGMPAVGMTDHGNMYGGDEFFQTSKKHGIK 61 Query: 69 PIIGCQLDIDMQDNL--------KMTNQGKTPFP---------TVPSIVLLVSTAEGYQR 111 PIIG + + + + + +G F + ++ A G + Sbjct: 62 PIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGGGAYTHMTMVAGNATGLRN 121 Query: 112 LIELVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L +L S + QG + R+ + E EG+I TG SG + + A + Sbjct: 122 LFKLSSLASI--QGYYRKPRMDRELIAE-NAEGIIATTGCPSGEVQTRLRLGQREAAIQA 178 Query: 171 LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 +K +FG Y+ L H +R ++++ +LP +ATN+S +++++ + H Sbjct: 179 ASDYKDIFGAGNFYLELMDHGLPIERSVREGLLEIGKLLDLPPLATNDSHYVTKDQADTH 238 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFS-DLPEALENTVEIARRCSFILQ 286 L+ V ++ R + D Y LK+ EM + ++P A +NT+ IA R Sbjct: 239 SALLCVQAGKTLNDPTRFKFDGDGYFLKSAQEMREYWDKEVPGAADNTLLIAERVESYED 298 Query: 287 V--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 V H +P F E E L ++ ++GLE RL G +YR+R ++E Sbjct: 299 VYAHKDRMPVFDVPEG----HTEATWLHHEVMSGLEHRLPDGV------PDEYRERAEYE 348 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 L VI F GYFLI AD + A++ I VGPGRGS AGS+ AYAL IT++DP+R LLF Sbjct: 349 LEVIVEKGFPGYFLITADLMTHAREAGIRVGPGRGSAAGSLVAYALRITNLDPIRHGLLF 408 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DF RR E+IRY KYG +R+AQ+ITFG+++ KAA++D R Sbjct: 409 ERFLNPERVSMPDIDMDFDDRRRGEMIRYATEKYGSDRIAQVITFGTIKTKAAIKDSARV 468 Query: 465 L--QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLE 513 Q Y+ DR+ K +P A + L I D R A A D + E Sbjct: 469 HFGQPGYAIADRISKALPPPVAAKDIPLSGIVDAKHERYAEAAEVRALVETDEECKTIFE 528 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 ++ LEGL R+A HA +++ PL +P++R + +T ++ E GL+K DF Sbjct: 529 TARGLEGLIRNAGVHACAVIMSSEPLLNAIPLWRRDDGSI-ITGWDYPSCEAIGLLKMDF 587 Query: 574 LGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ LT++ ++D + A RG +DL + DD ET+ LL +LG+FQL+ MR L Sbjct: 588 LGLRNLTVIGDAIDNIQANRGEDIDLDRLAIDDPETFALLVRGDSLGVFQLDGGAMRDLL 647 Query: 633 EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQ 686 M+P EDI+A+ +LYRPGP ++ Y +RKN ++ I IHP L +P+ L ET Sbjct: 648 RRMRPTGFEDIVAVNALYRPGPMAMNTHNNYADRKNKRQAIEPIHPELEEPLREILAETH 707 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+++YQEQ+MQIAQ ++GYS+ ADVLRRAMGKK KE ++K+ E F +G NG S Sbjct: 708 GLVVYQEQIMQIAQKVAGYSMGRADVLRRAMGKKKKEVLEKEFEGFRAGMIDNGFSAEAV 767 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 +++ + FA Y FNKSHAA YA++ Y TA++K +Y E++AA +T DN +K + Sbjct: 768 QALWDTILPFAGYAFNKSHAAGYALVGYWTAYLKANYTAEYMAALLTSVGDNKDKSAIYL 827 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSL 865 + R+ I+++PP VN + F N I + L A++ VG I++ +K + S Sbjct: 828 SECRRLGIKVLPPDVNESALRFAAVGNDIRFGLGAVRNVGANVVESIIKTREEKGKYSSF 887 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF + + N+RV+ESL+ AGA D G++R+ ++Q ++ + +++ + Sbjct: 888 TDFLDKSELVACNKRVIESLIKAGAFDSMGHTRLSMIQVHEDAVEAVVPLKRQEAMGQFD 947 Query: 926 IFAHE-KGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 +F E + S + KF+ E + E+ +LG Y S HPLD + +LRK + Sbjct: 948 LFGGESEEPASSPLAHVKFTAEEWPRKQLLAQERDMLGLYVSAHPLDGAEGVLRKHAPR- 1006 Query: 983 YEESVATIRGN-----NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A I N + +A ++ S +++ +KG T + E FF Sbjct: 1007 ---PIAAIIDNPPKEGELVVAGLITSLERRVNKKGEPWAICTVEDLDASLEVLFF 1058 >gi|294674564|ref|YP_003575180.1| DNA polymerase III subunit alpha [Prevotella ruminicola 23] gi|294473595|gb|ADE82984.1| DNA polymerase III, alpha subunit [Prevotella ruminicola 23] Length = 1243 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 374/1109 (33%), Positives = 569/1109 (51%), Gaps = 105/1109 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------Q 60 FVHL VH+ YS+L+G S+ ++DK D +AITD ++F EF + Sbjct: 4 FVHLHVHTYYSILDGQSSIKKLVDKAIGDGMKGMAITDHGDMFGIKEFHDICNGVNKQRK 63 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 K +PI GC++ + + ++ M +GK +++L GY+ LI+LVS + Sbjct: 64 KDGLEPFKPIFGCEMYVARRGDM-MLKEGKEDLGGY-HLIVLAKNEHGYKNLIKLVSNSW 121 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + D R L++ E LI+ + +G + + A K + K L+GD Sbjct: 122 V-DGFYNRPRTDHKQLEKY-HEDLIVCSACIAGEVPAKILKGDIEGARKAIEWHKNLWGD 179 Query: 181 RLYVNLQRHRGYD----RYRES---------QVVQLAYTHELPLVATNNSLFLSEEDYEA 227 Y+ LQRH D RE+ +++LA + + LV TN+S F+ +E+ EA Sbjct: 180 DYYLELQRHEVTDPNIRANRETFPLQQQANKVLIELAKEYGVKLVCTNDSHFVDKENAEA 239 Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 HD L+ +A + R + + K + EM IFSD+PEAL NTVEI + Sbjct: 240 HDHLLCLATGKDLDDPTRMLYSKQEWFKTQQEMNDIFSDVPEALANTVEILNKVETYSLD 299 Query: 288 HAPILP----------------RFIEKECDDIQKEEEN----------ELRNKAVAGLE- 320 PI+P +F E++ + +EN E + K + G + Sbjct: 300 ADPIMPFFPIPESFGTEEEWRQKFTEQQLFEEFTTDENGENPLDPEAAEKKIKKLGGYDK 359 Query: 321 -----------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 +LA + Y +D +R+ FEL+++ M F GYFLIV DFI Sbjct: 360 IYRIKFEADYLAKLAYEGAERRYGNPIPKDVEERVKFELHIMKTMGFPGYFLIVQDFINS 419 Query: 367 AKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 A+ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF D Sbjct: 420 ARDELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDIDTDFDDD 479 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN---- 481 R +V+++V +KYGHE A IIT+ S+ K +++DV R +P + + LCK IP+ Sbjct: 480 GRGKVLKWVMDKYGHENCAHIITYASMATKNSIKDVARVENVPLAISNALCKAIPDRLPE 539 Query: 482 -DPAHPVS--LQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 D P AI +EA + DP + ++ ++ LEG R HA G +I Sbjct: 540 VDGKTPKMNLTNAIKAVPELQEAEASTDPHIANTMKYAKMLEGTVRGTGIHACGFIICRD 599 Query: 538 PLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 P+S VP+ D TQ++ IE GLIK DFLGLKTL+ L+++ + + Sbjct: 600 PISDHVPVSTADDPDFKGTKTNCTQYDGHVIESTGLIKMDFLGLKTLSELKEACANIKRT 659 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 RG+ VDL IP DD +TY L T+G FQ ES GM++ L + P ED+IA+ +LYR Sbjct: 660 RGIDVDLDTIPIDDPKTYELYQQGRTVGTFQFESQGMQKYLRELHPTVFEDLIAMNALYR 719 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D I + RKNG+E I ++ LK+T G+ +YQEQVM +++ L+ ++ E+D Sbjct: 720 PGPMDYIPSFIARKNGREPITYDIDCMEKYLKDTYGITVYQEQVMLLSRQLADFTRGESD 779 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 LR+AMGKK K+ +D K +FI G KNG + I+ KFA Y FNKSHAA Y+ Sbjct: 780 ALRKAMGKKKKDIVDAMKPKFIEGGKKNGHDPKVLEKIWADWEKFASYAFNKSHAACYSW 839 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++YQTA++K +YP E++AA M+ D + +I K + +Q I + P VN F V Sbjct: 840 VAYQTAYLKANYPAEYMAAIMSRRRDQITEITKLMDECKQMGIATLGPDVNESYEKFGVN 899 Query: 832 DN-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I + L AIKG+G + A I+ E + P+ + DF RV+ +NR+ ESL +G Sbjct: 900 HHGEIRFGLGAIKGMGDSAALSIIDEREKNGPYKDIYDFAQRVNFSAVNRKAFESLALSG 959 Query: 890 ALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 D FG R ++ + +Y Q ++ + ++F G F + + + + Sbjct: 960 GFDSFGIRREDYFAKNPKGETFIEMLCRYGQLYQQEQAEMKNSLF----GMFGEGVEIAQ 1015 Query: 943 FSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRG-N 993 + +R+ + E+ ++G Y S HPLD YK IL + E +A + Sbjct: 1016 PQPPKNDIRWSDIERLNKERELVGIYLSAHPLDEYKIILDNLCNTKCTELADIAKLADRE 1075 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 ++ L +V +++ T+ G G VT + Sbjct: 1076 DVILGGIVTAQKTGFTKTGKPYGVVTIED 1104 >gi|15608685|ref|NP_216063.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Rv] gi|15841014|ref|NP_336051.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CDC1551] gi|31792733|ref|NP_855226.1| DNA polymerase III subunit alpha [Mycobacterium bovis AF2122/97] gi|121637469|ref|YP_977692.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661343|ref|YP_001282866.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Ra] gi|148822771|ref|YP_001287525.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis F11] gi|167968102|ref|ZP_02550379.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Ra] gi|215411208|ref|ZP_03420016.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 94_M4241A] gi|215426890|ref|ZP_03424809.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T92] gi|215430440|ref|ZP_03428359.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054] gi|215445744|ref|ZP_03432496.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T85] gi|218753267|ref|ZP_03532063.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis GM 1503] gi|219557457|ref|ZP_03536533.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T17] gi|224989943|ref|YP_002644630.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str. Tokyo 172] gi|253799398|ref|YP_003032399.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis KZN 1435] gi|254231775|ref|ZP_04925102.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis C] gi|254364418|ref|ZP_04980464.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis str. Haarlem] gi|254550566|ref|ZP_05141013.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186497|ref|ZP_05763971.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CPHL_A] gi|260200607|ref|ZP_05768098.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T46] gi|260204831|ref|ZP_05772322.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis K85] gi|289443001|ref|ZP_06432745.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis T46] gi|289447158|ref|ZP_06436902.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis CPHL_A] gi|289554661|ref|ZP_06443871.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis KZN 605] gi|289569583|ref|ZP_06449810.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis T17] gi|289574231|ref|ZP_06454458.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis K85] gi|289750114|ref|ZP_06509492.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis T92] gi|289753634|ref|ZP_06513012.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054] gi|289757663|ref|ZP_06517041.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis T85] gi|289761710|ref|ZP_06521088.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis GM 1503] gi|294996513|ref|ZP_06802204.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 210] gi|297634115|ref|ZP_06951895.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN 4207] gi|297731102|ref|ZP_06960220.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN R506] gi|298525059|ref|ZP_07012468.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 94_M4241A] gi|306775736|ref|ZP_07414073.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu001] gi|306779560|ref|ZP_07417897.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu002] gi|306784291|ref|ZP_07422613.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu003] gi|306788659|ref|ZP_07426981.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu004] gi|306792998|ref|ZP_07431300.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu005] gi|306797377|ref|ZP_07435679.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu006] gi|306803258|ref|ZP_07439926.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu008] gi|306807837|ref|ZP_07444505.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu007] gi|306967657|ref|ZP_07480318.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu009] gi|307079560|ref|ZP_07488730.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu011] gi|307084125|ref|ZP_07493238.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu012] gi|313658434|ref|ZP_07815314.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN V2475] gi|54036990|sp|P63978|DPO3A_MYCBO RecName: Full=DNA polymerase III subunit alpha gi|54040951|sp|P63977|DPO3A_MYCTU RecName: Full=DNA polymerase III subunit alpha gi|1403495|emb|CAA98315.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE1 (DNA NUCLEOTIDYLTRANSFERASE) [Mycobacterium tuberculosis H37Rv] gi|13881224|gb|AAK45865.1| DNA polymerase III, alpha subunit [Mycobacterium tuberculosis CDC1551] gi|31618323|emb|CAD96241.1| Probable DNA polymerase III (alpha chain) dnaE1 [Mycobacterium bovis AF2122/97] gi|121493116|emb|CAL71587.1| Probable DNA polymerase III (alpha chain) dnaE1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600834|gb|EAY59844.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis C] gi|134149932|gb|EBA41977.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis str. Haarlem] gi|148505495|gb|ABQ73304.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis H37Ra] gi|148721298|gb|ABR05923.1| DNA polymerase III alpha subunit dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis F11] gi|224773056|dbj|BAH25862.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str. Tokyo 172] gi|253320901|gb|ACT25504.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis KZN 1435] gi|289415920|gb|EFD13160.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis T46] gi|289420116|gb|EFD17317.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis CPHL_A] gi|289439293|gb|EFD21786.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis KZN 605] gi|289538662|gb|EFD43240.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis K85] gi|289543337|gb|EFD46985.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis T17] gi|289690701|gb|EFD58130.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis T92] gi|289694221|gb|EFD61650.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054] gi|289709216|gb|EFD73232.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis GM 1503] gi|289713227|gb|EFD77239.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis T85] gi|298494853|gb|EFI30147.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 94_M4241A] gi|308215828|gb|EFO75227.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu001] gi|308327494|gb|EFP16345.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu002] gi|308330956|gb|EFP19807.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu003] gi|308334777|gb|EFP23628.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu004] gi|308338566|gb|EFP27417.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu005] gi|308342267|gb|EFP31118.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu006] gi|308345762|gb|EFP34613.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu007] gi|308350062|gb|EFP38913.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu008] gi|308354716|gb|EFP43567.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu009] gi|308362582|gb|EFP51433.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu011] gi|308366247|gb|EFP55098.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu012] gi|323719995|gb|EGB29107.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis CDC1551A] gi|326903177|gb|EGE50110.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis W-148] gi|328459148|gb|AEB04571.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis KZN 4207] Length = 1184 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 359/1074 (33%), Positives = 570/1074 (53%), Gaps = 70/1074 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + +L ++ PA+ +TD N+F A EF A AGI+P Sbjct: 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 Query: 70 IIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + I + + + + + ++ A G + L +L S Sbjct: 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Q + R+ + E EG+I+ TG SG + + A + ++++ G Sbjct: 129 SFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H +R ++++ +P +ATN+ +++ + H+ L+ V Sbjct: 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 Query: 238 TVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI--LP 293 +S +R + D +YLK+ +EM I+ D +P A ++T+ IA R V P +P Sbjct: 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F + D + + LR++ AGL R G YR+R +E++VI F Sbjct: 308 VFPVPDGHD----QASWLRHEVDAGLRRRFPAGP------PDGYRERAAYEIDVICSKGF 357 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIVAD I +A+ I VGPGRGS AGS+ AYAL ITDIDP+ LLFERFLNP+R Sbjct: 358 PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471 SMPD DIDF RR E++RY +K+GH+RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 418 SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477 Query: 472 VDRLCKLIPNDP---AHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEG 520 DR+ K +P P A + L I D S R++EA DP V + + ++ LEG Sbjct: 478 ADRITKALP--PAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEG 535 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT Sbjct: 536 LIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLT 595 Query: 581 LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ ++D + A RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 596 IIGDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTG 655 Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQE 693 ED++A+++LYRPGP+ Y +RKN ++ I IHP L +P+ L ET G+I+YQE Sbjct: 656 FEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQE 715 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 Q+M+IAQ ++ YSL+ AD+LR+AMGKK +E ++K+ E F G NG S +++ + Sbjct: 716 QIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTI 775 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FADY FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ Sbjct: 776 LPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLG 835 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872 I ++PP VN ++F I Y L A++ VG +++ DK F D+ +++ Sbjct: 836 ITVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKI 895 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEK 931 D N++V ESL+ AGA D G++R L + +K ++F +++ Sbjct: 896 DISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDD 955 Query: 932 GT------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 GT F+ K+ +++ ++ + E+ +LG Y SGHPL+ +L + Sbjct: 956 GTGTADPVFTIKVPDDEWEDKH---KLALEREMLGLYVSGHPLNGVAHLLAAQ----VDT 1008 Query: 986 SVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ I + +R+ ++ S ++ + G + E FFP Sbjct: 1009 AIPAILDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1062 >gi|302533930|ref|ZP_07286272.1| DNA polymerase III subunit alpha [Streptomyces sp. C] gi|302442825|gb|EFL14641.1| DNA polymerase III subunit alpha [Streptomyces sp. C] Length = 1180 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 362/1078 (33%), Positives = 560/1078 (51%), Gaps = 68/1078 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+P F HL VH+ YSLL+GA L ++ IA++D NL A +F A Sbjct: 1 MTKTP-FTHLHVHTQYSLLDGAARLKDMFAACNEMGMTHIAMSDHGNLHGAYDFFHSAQK 59 Query: 65 AGIQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AGI PIIG + + + + N + G+ P + + + A G L Sbjct: 60 AGITPIIGIEAYVAPESRRNKRRIQWGQ-PHQKRDDVSGSGGYTHKTIWAANATGLHNLF 118 Query: 114 ELVSRMY----LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L S Y L + W +EGLI TG SG + A K Sbjct: 119 RLSSDAYAEGWLTKWPRMDKETISQW-----SEGLIASTGCPSGEVQTRLRLGQFDEAIK 173 Query: 170 RLLTFKKLFGD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 +K +FG+ R ++ L H +R ++++ +P + TN+S + + A Sbjct: 174 AASDYKDIFGEGRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAGA 233 Query: 228 HDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRC-SF 283 HD L+ + +S DR R +YLK+ EM +I S E NT ++A + + Sbjct: 234 HDALLCIQTGKNLSDPDRFRFDGSGYYLKSTEEMYAIDSSDAWQEGCANTWKVAEQVDTE 293 Query: 284 ILQVHAPILPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + ++P+F DI E R + + G+ R G +D +++ Sbjct: 294 GMFKFRNLMPKF------DIPDGYTEVTWFREETMRGMHRRFPGGI------PEDRMKQV 341 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 ++E++ I M F GYFL+VADFI WAK I VGPGRGS AGS+ AYA+ ITD+DP+ Sbjct: 342 EYEMDTIISMGFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHG 401 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 L+FERFLNP+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G+++AK A++D Sbjct: 402 LIFERFLNPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDS 461 Query: 462 GRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLL 512 R L PY+ DRL K +P D + L I D S R+ EA +P V +++ Sbjct: 462 ARVLGYPYAMGDRLTKAMPADVLGKGIPLSGILDPSHPRYSEAGEIRGMYENEPDVKKVI 521 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + ++ +EGL R HAAG+++ ++ VP++ + +TQ++ E GL+K D Sbjct: 522 DTARGVEGLVRQMGVHAAGVIMSSERITDHVPVWVRHTDGVTITQWDYPSCESLGLLKMD 581 Query: 573 FLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGL+ LT++ ++ + A +G+ +DL +P DD +T+ LL TLG+FQ + MR Sbjct: 582 FLGLRNLTIMDDAVKMVKANKGIDIDLLALPLDDPKTFELLQRGDTLGVFQFDGGPMRSL 641 Query: 632 LEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----T 685 L M+PD EDI A+ +LYRPGP +++ Y RKN ++ I IHP ++ L+E T Sbjct: 642 LRLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNKQQDITPIHPELEKPLEEVLAVT 701 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK EE+ K F +GA KNG S Sbjct: 702 YGLIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDQA 761 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 ++++L FA Y FNK+H+AAY ++SY TA++K +YP E++A +T D+ +K + Sbjct: 762 IQALWDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAIY 821 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863 + R+ I+++PP+VN +F GD+ I + L A++ VG I++ K + Sbjct: 822 LNECRRMGIKVLPPNVNESESNFAAQGDDVILFGLTAVRNVGQNVVDSIIKTRKSKGKYS 881 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 S DF +V++ N+R +ESL+ AGA D G++R L+ +++ V++ Sbjct: 882 SFPDFLDKVEAVVCNKRTVESLIKAGAYDEMGHTRKGLVAHHESMIDNVVAVKRKEAEGQ 941 Query: 924 ENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRK 977 ++F VE S V +E E+ +LG Y S HPL + +L Sbjct: 942 FDLFGGMGDEDGGDEPGFGLDVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSD 1001 Query: 978 MGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1002 KTDAGISQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1059 >gi|221194701|ref|ZP_03567758.1| DNA polymerase III subunit alpha [Atopobium rimae ATCC 49626] gi|221185605|gb|EEE17995.1| DNA polymerase III subunit alpha [Atopobium rimae ATCC 49626] Length = 1276 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 343/1027 (33%), Positives = 537/1027 (52%), Gaps = 71/1027 (6%) Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI GC+ D ++ + T ++LL GY L++++S + Sbjct: 125 IKPIFGCEAYFITDDCIERGTK-----QTRYHLILLAKNETGYVNLMKMMSEAASKEMFY 179 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R L L+ EG+I + SG I R+FF + AE+ L +K++FGD Y+ + Sbjct: 180 FKPRTTLDMLRRY-HEGIICTSACVSGIIPRSFFAGQPEEAERWALIYKEIFGDDFYLEV 238 Query: 187 QRH-------RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Q H G+ DR Q++ L + + +VATN++ +L+ ED D+ + + Sbjct: 239 QDHGLSDPNWNGFTDRTLSEQILNLGHKLNIKVVATNDNHYLTREDASVQDIASCIGTGS 298 Query: 239 VVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + +R R++ + Y K EM IFS PE ++NT+E+A +C++ L LP+F Sbjct: 299 KFADANRKRMSGNEFYFKTEEEMREIFSWAPEVIDNTLEVADKCNYELDWTHMYLPKF-- 356 Query: 298 KECDDIQKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 D+ + E +E R + GL R + + ++R ++E ++I + F+ Sbjct: 357 ---PDLAEGETSEERFRKECEEGLARRYGENWREVEISGINVKERFEYEYDIICKKGFAD 413 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV ++++WAK+N I VGPGRGS AG++ AYA+ IT DPL L+FERFL+P R M Sbjct: 414 YFLIVQEYVRWAKQNGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERFLSPQRSEM 473 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DF +RR EV+ +V+ YG ERV+ +IT+ +++AK A+ D R L P Q RL Sbjct: 474 PDIDMDFDDERRLEVVEHVRQLYGPERVSHVITYSTIKAKQAINDACRVLDYPVYQGQRL 533 Query: 476 CKLIPNDPAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGLYRHAST 527 K+I NDP +S D F EA + + +++ + +EGL+R Sbjct: 534 SKMISNDPKAQLSKVLHKGDGEKNDLYNPDFEEAYNTEEASREIIDAALAIEGLHRGEGV 593 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL- 586 HA ++I P++ VP D + ++ +TQF + GL+K DFLGL+TLT++ ++L Sbjct: 594 HACAVLIAPTPVNDHVPTKMDTKGEVEITQFEGHSVADMGLLKMDFLGLRTLTVISRALK 653 Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + A V +++ IPF+D E Y L+ T G+FQ+ES+GM ++GM+P + I+AL Sbjct: 654 NIKANFDVDINVDEIPFEDPEIYRLMREGRTSGVFQIESAGMTATIKGMRPTEFKHIVAL 713 Query: 647 VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++LYRPGP+ +V Y +R NG+E+ V P + +L ET G ++YQEQVMQI+ +SG Sbjct: 714 IALYRPGPLGAGMVSSYIDRMNGREEPVDYDPRLHDILAETYGTMVYQEQVMQISMKMSG 773 Query: 705 YSLSEADVLR--------RAMGKKIKEEMDKQKE----RFISGASKNGISKTIAVNIFEL 752 ++ E+D +R + M + I+ D E + GA +NG + A I+E Sbjct: 774 FTAGESDKVRKAVAKKKIKLMQEVIQHWDDGADETMEQHWKEGAVRNGFKRETAEIIWED 833 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA Y FNKSH+A YA++ QTAW+K HYP E++AA +T M +KI + RQ Sbjct: 834 VLKFASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSFMGKTDKIVHYVSACRQE 893 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871 I++ P +N DF I + A I+GVG A IM E PF +L DF R Sbjct: 894 GIKVSQPDINESGRDFTATKEGIRFGFAGIRGVGAGVAEAIMAERQKGGPFSNLRDFIDR 953 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD--NIQKYAQWVEKNRTNKHE----- 924 +D+ + R V+E+L+ AGA D GY+RMQL++ +D N + K + +K Sbjct: 954 MDASQAKRNVVEALIKAGAFDSTGYTRMQLMKLIDKNNPENLLDSAAKRQRDKASGQISM 1013 Query: 925 -NIFAHEKGT-FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR------ 976 ++F+ +G+ F++ + E VLG Y S HPL Y L Sbjct: 1014 FDLFSEVEGSGFTEDFPDPDGVEWERRFKLSQEYDVLGIYVSDHPLTPYAYALSLARDYE 1073 Query: 977 ----------KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 + G +E G NIRL+ MV + Q++ T+ G + VT + E Sbjct: 1074 LVDIDATEEYRAPDGGIKERFKVPEGENIRLSGMVTNIQKRITKNGDPMAIVTLEDMEGE 1133 Query: 1027 YEANFFP 1033 FP Sbjct: 1134 LSLVLFP 1140 Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 +FVHL HS +S+L+ A +N+++ + + PA+A+TD LF +F AC Sbjct: 2 AFVHLHNHSDFSILDAATRVNDMVKRAVDLKMPALALTDHGYLFGIPDFDL-AC 54 >gi|297194911|ref|ZP_06912309.1| DNA polymerase III subunit alpha [Streptomyces pristinaespiralis ATCC 25486] gi|197723064|gb|EDY66972.1| DNA polymerase III subunit alpha [Streptomyces pristinaespiralis ATCC 25486] Length = 1179 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 353/1072 (32%), Positives = 569/1072 (53%), Gaps = 64/1072 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFEACNEMGMTHIAMSDHGNLHGAYDFFHTAKKAGVT 63 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117 PIIG + + + + N + G+ P + + + A G L L S Sbjct: 64 PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTIWAANATGLHNLFRLSS 122 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Y ++ R+ + + ++GLI TG SG + A K ++ + Sbjct: 123 DAYAEGWLQKWPRMDKETISQW-SQGLIASTGCPSGELQTRLRLGQFDEALKSASEYQDI 181 Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ + Sbjct: 182 FGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAAAHDALLCIQ 241 Query: 236 HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP-I 291 +S DR R +YLK+ EM +I S E NT+ +A++ A + Sbjct: 242 TGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCRNTLLVAQQVDTEGMFEAKNL 301 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P+F E E + + + G+E R G +D ++++++E++VI +M Sbjct: 302 MPKFDIPEG----HTEVTWFKEEVMRGMERRFPGGI------PEDRQKQVEYEMDVIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLEGLY 522 DRL K +P D + L I D S R+ EA +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ +++ VP++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + + +G+ +++ +P DD +T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAIKMVKSNKGIDLEMLSLPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP +++ Y RKN +++I IHP ++ L+E T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEEPLREVLDVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK +E+ K F GA + G S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQKGAREKGYSDEAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L A++ VG I++ A + S DF +V+ Sbjct: 832 VLPPNVNESMSNFAAQGDDVILFGLTAVRNVGQNVVESIIKTRKAKGKYSSFPDFLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 892 AVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGGMGEE 951 Query: 934 FSDKITLEKFSVENSSVRFE------NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 SD+ VE S V ++ E+ +LG Y S HPL + +L + ++ Sbjct: 952 ASDEPGF-GLDVEFSDVEWDKSYLLAQEREMLGLYVSDHPLFGIEHVLSDK----TDAAI 1006 Query: 988 ATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1007 SQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|229496705|ref|ZP_04390419.1| DNA polymerase III, alpha subunit family [Porphyromonas endodontalis ATCC 35406] gi|229316602|gb|EEN82521.1| DNA polymerase III, alpha subunit family [Porphyromonas endodontalis ATCC 35406] Length = 1251 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 353/1069 (33%), Positives = 560/1069 (52%), Gaps = 116/1069 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF----------------- 53 FVHL VHS +S+L+G S++ ++ K D P IA+TD +F Sbjct: 4 FVHLHVHSQFSILDGQASVSALVKKAIGDGMPGIALTDHGVMFGIKTFFDECNKVNSKHR 63 Query: 54 ---SAL-----EFSQKACAAG--------------------IQPIIGCQLDIDMQDNLKM 85 SAL E +K +PI GC+ + + Sbjct: 64 SRISALKKEIKELQKKESPTPEDKEEIEKLEQEISEVERQMFKPIFGCEAYCARR--TRF 121 Query: 86 TNQGKTPFPTVPS---------IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136 P P PS ++LL +GY L ++VS + + + RI L Sbjct: 122 DKDKDVPDPYNPSRSIDRSGWHLILLAKNKQGYLNLCKMVSASFTEGEYYRP-RIDKDLL 180 Query: 137 QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--R 194 ++ EG+I+++ G + + + AE+ + FK +FG+ Y+ +Q H+ D Sbjct: 181 EQY-HEGVIVMSACLGGEVPQHILGGHPERAEETVRWFKNIFGEDYYLEVQLHQTDDPNA 239 Query: 195 YRESQVVQLAYTHEL---------PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 RE+ V QLA + +VATN+ F+++ED AHD+L+ + + R Sbjct: 240 NRETFVQQLAVNEVIYDIAERTGVKVVATNDVHFVNQEDATAHDMLICLGTKRDLDDPQR 299 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQ 304 R + +LK + EM ++F+D PE L NT+EI + F + ++P F + + DD Sbjct: 300 MRYSQQEWLKTQEEMNAVFADRPELLSNTLEILNKVEFYTIENPALMPDFPLPEGFDDAD 359 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 K L++ G ++R ++ ++R+DFELN I M F GYFLIV D I Sbjct: 360 KY----LQHLTYEGAKMRYGDPI------PEEVKERIDFELNTIKSMGFPGYFLIVQDLI 409 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 Q A+ + VGPGRGS AGS AY L IT++DPL++ LLFERFLNPDR+S+PD DIDF Sbjct: 410 QAARDMGVCVGPGRGSAAGSAVAYCLKITNLDPLKYGLLFERFLNPDRISLPDIDIDFDD 469 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 R +++++ KYGH+ VAQIITFG ++AK+++ DV R +P + R+ KLIP D Sbjct: 470 SGRAKILQWATEKYGHKNVAQIITFGEMKAKSSIADVARLKHIPVEESRRITKLIP-DKF 528 Query: 485 HPVSLQAIADDSRFREAR---------LADPSVDRL-----------LEISQKLEGLYRH 524 ++ I + A+ L P + +L + +QKLEG R+ Sbjct: 529 SDSDMELIHKTPGYENAKGNVTIELSTLVVPELKKLQVGSNTQIQDTFKYAQKLEGSIRN 588 Query: 525 ASTHAAGIVIGDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 HA G++IG +S ++P+ + + + +TQ+ K IE GLIK DFLGLKTL++ Sbjct: 589 IGVHACGVIIGKYDISDVIPISTSFDENGEKVLITQYEGKVIESTGLIKMDFLGLKTLSI 648 Query: 582 LQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 +++ L+ + R K +D+ IP DD +T+ L +GIFQ ES+GM++ L +QPD Sbjct: 649 IREGLENVKHRFHKDIDIDHIPLDDEKTFKLFCEGRMVGIFQFESAGMQKYLRELQPDRF 708 Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 E +IA+ +LYRPGP+ I Y R++G+E+I+ P +L+ET GV +YQEQVM +++ Sbjct: 709 ELLIAMNALYRPGPMKYIPQYIARRHGREEIIYDVPETKEILEETFGVTVYQEQVMLLSR 768 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 L+ ++ ++D LR+AMGKK EEM+K K F+ G +NG SK + I+ FA Y Sbjct: 769 SLANFTRGQSDSLRKAMGKKKIEEMEKLKADFLKGGVENGHSKEVLEKIWMDWEDFAKYA 828 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAA Y+ ++YQTA++K HYP EF+A +++ + N +I K ++ + I+++ P Sbjct: 829 FNKSHAACYSWLAYQTAYLKAHYPSEFMAGNLSCNLSNAPEIAKLMKECKAMGIRLLSPD 888 Query: 821 VNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLN 878 VN F V N I + L+ IKGV TT ++E + PF S+ DF +R+ + +N Sbjct: 889 VNESMQKFSVNSNGDIRFGLSGIKGVNQTTIDKLIEDREQNGPFTSIYDFVARIPRQFIN 948 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQK---------YAQWVEKNRTNKHENIFAH 929 R+ +E+ +GA D FG R N ++ Y + V++ +++ +F Sbjct: 949 RKTMEAFALSGAFDSFGIERESFFAPPVNSREDSFIATLLAYGRIVQEESSSQSMGLFGE 1008 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + + + N+ + E ++G Y S +PL+ Y+ IL K+ Sbjct: 1009 SEELSIPEPEVPQAEPWNNLTKLSKEYELVGIYISSNPLEPYRLILDKL 1057 >gi|215403402|ref|ZP_03415583.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987] gi|289745303|ref|ZP_06504681.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987] gi|289685831|gb|EFD53319.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987] Length = 1184 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 359/1074 (33%), Positives = 570/1074 (53%), Gaps = 70/1074 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + +L ++ PA+ +TD N+F A EF A AGI+P Sbjct: 9 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKP 68 Query: 70 IIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + I + + + + + ++ A G + L +L S Sbjct: 69 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHA 128 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Q + R+ + E EG+I+ TG SG + + A + ++++ G Sbjct: 129 SFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H +R ++++ +P +ATN+ +++ + H+ L+ V Sbjct: 188 PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247 Query: 238 TVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI--LP 293 +S +R + D +YLK+ +EM I+ D +P A ++T+ IA R V P +P Sbjct: 248 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F + D + + LR++ AGL R G YR+R +E++VI F Sbjct: 308 VFPVPDGHD----QASWLRHEVDAGLRRRFPAGP------PDGYRERAAYEIDVICSKGF 357 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIVAD I +A+ I VGPGRGS AGS+ AYAL ITDIDP+ LLFERFLNP+R Sbjct: 358 PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471 SMPD DIDF RR E++RY +K+GH+RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 418 SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477 Query: 472 VDRLCKLIPNDP---AHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEG 520 DR+ K +P P A + L I D S R++EA DP V + + ++ LEG Sbjct: 478 ADRITKALP--PAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEG 535 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT Sbjct: 536 LIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLT 595 Query: 581 LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ ++D + A RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 596 IIGDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTG 655 Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQE 693 ED++A+++LYRPGP+ Y +RKN ++ I IHP L +P+ L ET G+I+YQE Sbjct: 656 FEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQE 715 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 Q+M+IAQ ++ YSL+ AD+LR+AMGKK +E ++K+ E F G NG S +++ + Sbjct: 716 QIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTI 775 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FADY FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ Sbjct: 776 LPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLG 835 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872 I ++PP VN ++F I Y L A++ VG +++ DK F D+ +++ Sbjct: 836 ITVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKI 895 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEK 931 D N++V ESL+ AGA D G++R L + +K ++F +++ Sbjct: 896 DILACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDD 955 Query: 932 GT------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 GT F+ K+ +++ ++ + E+ +LG Y SGHPL+ +L + Sbjct: 956 GTGTADPVFTIKVPDDEWEDKH---KLALEREMLGLYVSGHPLNGVAHLLAAQ----VDT 1008 Query: 986 SVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ I + +R+ ++ S ++ + G + E FFP Sbjct: 1009 AIPAILDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1062 >gi|304383785|ref|ZP_07366243.1| DNA-directed DNA polymerase III alpha subunit [Prevotella marshii DSM 16973] gi|304335041|gb|EFM01313.1| DNA-directed DNA polymerase III alpha subunit [Prevotella marshii DSM 16973] Length = 1238 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 363/1115 (32%), Positives = 577/1115 (51%), Gaps = 100/1115 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------SQKAC 63 FVHL VH+ YS+L+G S+ N+++K A+ +AITD N+F EF + + Sbjct: 4 FVHLHVHTYYSILDGQSSIENLVEKAVANGMKGMAITDHGNMFGTKEFYNYCKGVNARLK 63 Query: 64 AAG---IQPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 A G +PIIGC++ + + K+ +G + +++L GY+ LI+LVSR Sbjct: 64 AEGKPAFKPIIGCEMYVAHRKKTDKVFEKGDR---SGYHLIVLAKNYTGYKNLIKLVSRS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 ++ D R L+ EGLI+ + +G + R + A + + + ++FG Sbjct: 121 WV-DGFYMRPRTDREDLERF-HEGLIVCSACIAGEVPRKILSGDMEGAREAVEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYDRYRESQ-------------VVQLAYTHELPLVATNNSLFLSEEDYE 226 + Y+ +QRH D + ++ ++ L + + ++ TN++ F+ +E+ E Sbjct: 179 EDYYLEMQRHEVKDPHVKANRETFPQQQRANKVLLTLGKEYGIKVICTNDAHFVDQENAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + +R T + K R EM +F+D PEAL NT+EI + Sbjct: 239 AHDHLLCLSTGKDLDDPNRLIYTKQEWFKTREEMNEVFADQPEALTNTLEILDKVEVYSI 298 Query: 287 VHAPILPRFI--------------------------EKECDDIQKEEENELRNKAVAGLE 320 PI+P F ++ ++I EE E + + + G + Sbjct: 299 DSLPIMPFFPIPESFGTEEDIRRRYTKEQLFEEFTRDENGNEILSREEAEQKIEKLGGYD 358 Query: 321 ----VRLAQGAIAK-GYHA----------QDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 ++ +AK Y ++ +R+ FEL+++ M F GYFLIV DFI Sbjct: 359 KLYRIKFEADYLAKLAYDGAKPLYGDPLPEEVAERIKFELHIMKTMGFPGYFLIVQDFIN 418 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A+ N + VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD D DF Sbjct: 419 SARNNLGVLVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D R +V+ +V++KYGH++VA IIT+G++ K +++DV R ++P Q + LCK+IP+ Sbjct: 479 DGRGKVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVARVERLPLEQANYLCKVIPDRLP 538 Query: 485 HPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + AI REA + D + ++ ++ LEG R HA G +I +S Sbjct: 539 DGMKMNLTNAIKAVPELREAEASPDERLSNTMKYAKMLEGTVRGTGIHACGTIICRDAIS 598 Query: 541 QLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594 VP+ D L TQ++ IE+ GLIK DFLGLKTL++L+++++ + G Sbjct: 599 DWVPVSVAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEAVENIRISTGD 658 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +DL IP DD TY L T+G FQ ES+GM++ L +QP ED+IA+ +LYRPGP Sbjct: 659 VIDLDHIPIDDKLTYQLYCEGRTIGTFQFESAGMQKYLRELQPSVFEDLIAMNALYRPGP 718 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RK KI P ++ LK+T G+ +YQEQVM +++ L+ ++ ++D LR Sbjct: 719 MDYIPDFIARKRDNSKIKYDLPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGQSDTLR 778 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK ++M+ + F G +KNG K + I+E KFA Y FNKSHA Y+ +++ Sbjct: 779 KAMGKKQIDKMNHLEGLFYEGGAKNGYPKEVLSKIWEDWKKFASYAFNKSHATCYSWVAF 838 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QTA++K HYP E++AA M+ ++N+ +I KF + + I + P VN F V Sbjct: 839 QTAYLKAHYPAEYMAAVMSRNLNNIAEITKFMDECKAMGISTLGPDVNESRQKFSVNKKG 898 Query: 834 RIYYSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + LAAIKG+G I E + PF + D R++ +NR+ LESLV +G LD Sbjct: 899 EIRFGLAAIKGMGDAAADAIIAERDKNGPFKDVFDVVQRINLNAVNRKALESLVLSGGLD 958 Query: 893 CFGYSRMQLL-------QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 F +R Q LD + +Y Q + + ++F + ++ Sbjct: 959 SFRIARESFFAPDNRGNQFLDTLIRYGQLYQMEQNEAQNSLFGGTEAVEIATPSVPSAEP 1018 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM--------GIKGYEESVATIRGNNIRL 997 + R E+ ++G Y S HPLD + I + G G E ++ + + + Sbjct: 1019 WSPPERLNRERDLVGIYLSAHPLDDFGMIFHNLCNTACTEVGQDGRREELS--KRDELIF 1076 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V S + K T+ G G+VT + E FF Sbjct: 1077 GGIVTSNKSKFTKTGKPCGFVTLEDFEGSGELAFF 1111 >gi|261749409|ref|YP_003257094.1| bifunctional DNA polymerase III subunit alpha/DNA polymerase III, epsilon subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497501|gb|ACX83951.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 1435 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 350/1009 (34%), Positives = 550/1009 (54%), Gaps = 64/1009 (6%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG------ 66 H+ H+S+S+L + + +++++ PA+ ITD N+ A F +A Sbjct: 251 HIHNHTSFSILYSTIDIQSLIERAIYFDMPAVGITDYGNMMGAFHFLNAIHSANKKYSSL 310 Query: 67 ---IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 I+ I+GC++ I D K T + P + L + A GYQ L +L S ++ Sbjct: 311 KKYIKGIVGCEVFISDFYSQKKFTKE--QPDKRYHQVFLSKNKA-GYQNLSKLCSHGFIE 367 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 R+ +++ + LI LTG I + AEK L +K+LF + Sbjct: 368 GFYAGVPRVGKDLIEKY-KKNLIALTGDLYAEIPQTILNKGKIKAEKVFLWWKELFEEDF 426 Query: 183 YVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH---- 236 Y+ L RH G + Y +++ + + + + NN+ +L ++ AHD+L+ V + Sbjct: 427 YIELLRH-GLEEEDYVNKVLLKFSEKYHVKYIVQNNTFYLDPKESYAHDILLCVKNGEKK 485 Query: 237 STVVSQKDRPRVT-PDH--YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 ST + + R P+H Y K+ EM IFSD PE+ + E+ + +LP Sbjct: 486 STPIGRGRGYRFGFPNHEFYFKSPEEMKEIFSDFPESFDFLEELVNKVESYHLSQKVLLP 545 Query: 294 RF-----IEKECDDI---QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 +F E D I + E + LR+ A G + R + + ++R+ FEL Sbjct: 546 KFKIPESFENSLDKIDGGHRGENSFLRSLAYEGAKKRYP-------HMTPEIQERIHFEL 598 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 I ++ + GYFLIV +FI AKK NI VGPGRGS AGSV AY + ITDIDP++++LLFE Sbjct: 599 KTIEKIGYPGYFLIVQNFISQAKKMNISVGPGRGSVAGSVVAYCIGITDIDPIKYNLLFE 658 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNPDR+S+PD DIDF R+++I +V KYG +VAQIIT+ ++ AK+A+RD R L Sbjct: 659 RFLNPDRISLPDIDIDFDDKGREKIIEWVVQKYGKNQVAQIITYATMGAKSAIRDTARVL 718 Query: 466 QMPYSQVDRLCKLIPNDPA---------HPVSLQAIADDSRFREARLADPSVDRL----L 512 + + D L K++PN + H + + D ++ + D L L Sbjct: 719 DLSLKKTDYLAKMVPNLLSLKILLSKKDHLLEKMSKEDMENVKKLKSISEKKDTLEGQVL 778 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + ++ LEG R HA GI+I + + VP+ SDL +TQF+ +E+AGL+K D Sbjct: 779 QQAKILEGSIRSTGIHACGIIISSYDIKEYVPVSISKESDLLITQFDNHVVEQAGLLKMD 838 Query: 573 FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 FLGLKTLT++++ L+ + +R + V+ P +D +TY L T+ +FQ ES GM++ L Sbjct: 839 FLGLKTLTIIKEVLNIIKKR-INVEKISFPLEDIKTYSLFQKGETVAVFQYESPGMQKYL 897 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 ++PD +D+IA+ +LYRPGP+ + + RK+GKE I P ++ LKET G+ IYQ Sbjct: 898 RLLKPDKFDDLIAMNALYRPGPLQYLTNFIYRKHGKEAITYDLPEMEEFLKETYGITIYQ 957 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM IAQ ++G+S E D LR+AMGKK KE ++K K +FI AS+ G K I I++ Sbjct: 958 EQVMLIAQKIAGFSKGETDFLRKAMGKKQKEVLNKMKNQFIIQASRKGYPKKILEKIWKD 1017 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 F+ Y FNKSHA YA I++QTA++K H+P E++A+ ++ MDN++++ F ++ ++ Sbjct: 1018 WEYFSCYAFNKSHATCYAYIAFQTAYLKAHFPSEYMASVLSHNMDNIKQLTYFIKECKRM 1077 Query: 813 NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCS 870 I ++ P +N FKV D N I + + IKGVG ++I++ + P+ S+ D Sbjct: 1078 GISVIGPDINESDAFFKVTDSNCIRFGMRGIKGVGENAVKNIIQERENHGPYTSIFDLVK 1137 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQL--------LQSLDNIQKYAQWVEKNRTNK 922 R+D + +N++ LESLV +G+LD F R Q L +L+ I ++ +K R + Sbjct: 1138 RIDLRIVNKKTLESLVLSGSLDKFHIHREQYFHFEEEKKLSTLEKIIRFGSKFQK-RKMQ 1196 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 +N +K +K + K N+ + E+ VLG Y S HPLD Y Sbjct: 1197 EKNFPKKKKKIEVEKPMIIKSEPWNNIYKLSKEKEVLGLYASSHPLDDY 1245 >gi|291302505|ref|YP_003513783.1| DNA polymerase III subunit alpha [Stackebrandtia nassauensis DSM 44728] gi|290571725|gb|ADD44690.1| DNA polymerase III, alpha subunit [Stackebrandtia nassauensis DSM 44728] Length = 1179 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 374/1085 (34%), Positives = 585/1085 (53%), Gaps = 89/1085 (8%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL VH+ YS+L+GA + + ++ +IA+TD N++ A EF Q+A GI Sbjct: 2 SKDFVHLHVHTEYSMLDGAAKMRPMFAEVERLGMSSIAMTDHGNMYGAYEFYQEAKKTGI 61 Query: 68 QPIIGCQLDIDMQD--NLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + + D + K G+ + + + + G + L++L S Sbjct: 62 KPIIGIEAYLAPGDRAHKKPVRWGRPDQKSDDVSGGGAYTHMTMWAANGSGLRNLLKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Q Q R+ L + EG+I TG SG + + A ++ + Sbjct: 122 LASFEGQ-YQKPRMDAELLSKY-AEGIIATTGCPSGEVQTRLRLDQPDEALAAAAKYQDI 179 Query: 178 FG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 FG D ++ L H G D R RE ++ ++ LPL+ATN+S ++ + D + H L+ Sbjct: 180 FGKDNFFLELMDH-GLDIETRVREG-LLDISKKLGLPLLATNDSHYVHQHDSDNHAALLC 237 Query: 234 VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI- 291 V ++ +R + D +Y+K+ +EM ++S+LPEA +NT+ IA R +V A + Sbjct: 238 VQSGKTLTDPNRFAFSGDGYYIKSPAEMRELWSELPEACDNTLLIAERIESYEEVFAEVD 297 Query: 292 -LPRFI--EKECDDI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 +PRF E E +DI +++ E N+ GL Q+Y+ R+D EL Sbjct: 298 RMPRFPLKEGETEDILLRRDVEKYTPNRFPDGL--------------TQEYKDRIDRELG 343 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 V++ M FSGYFL+V D ++WAK IP GPGRGS GS+ AY L ITD+DP+ SL+FER Sbjct: 344 VMSAMGFSGYFLVVGDLVRWAKSQKIPTGPGRGSATGSLVAYILQITDLDPIEHSLIFER 403 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA-L 465 FLNP+R+S PD D+DF + RR EV++Y K+G E VAQ+ITFG+++ KAAL+D RA L Sbjct: 404 FLNPERVSPPDIDLDFDERRRGEVMQYTVEKWGEENVAQVITFGTIKTKAALKDAARAHL 463 Query: 466 QMP-YSQVDRLCKLIPND-PAHPVSLQAIADDS--RFREARLA------DPSVDRLLEIS 515 P ++ +R+ K +P A + L I D + R+ EA +P V ++ + + Sbjct: 464 GQPGFAVAERIAKALPPPVAAQDIPLSGIVDPNHERYNEAAEVRALVENEPEVKQIFDTA 523 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFL 574 + LEGL R+A HA ++I PL VP++ +R D V T ++ E GL+K DFL Sbjct: 524 RGLEGLIRNAGVHACAVIISSVPLLGQVPLW--MRPDGSVITGWDYPSCEAMGLLKMDFL 581 Query: 575 GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ ++D + + GV++ I DD +T+ LL + G+FQ E +GM+ L+ Sbjct: 582 GLRNLTVIGDAIDNVKRNHGVELSTETITLDDPKTFELLCRGESAGVFQFEGAGMQDLLK 641 Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQG 687 MQP DI A+ +LYRPGP+ + + Y R NG++ IHP ++P+L ET Sbjct: 642 RMQPKKFGDIAAISALYRPGPMAANAHLNYAERANGRQSPEPIHPELKDALEPILGETFH 701 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +++YQEQVM IAQ L+GY+L AD+LRRAMGKK KE ++K+ E+F +G + NG S Sbjct: 702 LLVYQEQVMAIAQQLAGYTLGGADLLRRAMGKKKKEIIEKEFEKFSNGMTANGYSMEACQ 761 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +++++ FA Y FNKSH A Y +++Y TA++K +YP E++AA +T DN +K + Sbjct: 762 TLWDVMLPFAGYAFNKSHTAGYGLVTYWTAYLKANYPAEYMAALLTSVGDNKDKSALYLA 821 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLE 866 D R+ I+++PP VN +F I + L AI+ VGT I+ A ++S Sbjct: 822 DCRKLGIKVLPPDVNESRRNFSAVGGDIRFGLGAIRNVGTGVVDSIVATREAKGNYESFS 881 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF + + N+RV+ESL+ AGA D +SR L + + + + V++ ++ Sbjct: 882 DFLQKSELPVCNKRVIESLIKAGAFDSLKHSRKALCERHEVLVESIVGVKRKEAEGQFDL 941 Query: 927 F----------AHEKGTFSDKITLEKFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPI 974 F A G +D FS ++ E E+ +LG Y SGHPL+ + I Sbjct: 942 FGGMLTPDQPDAATPGGDTD------FSGDDWPRKTTLEFEREMLGLYVSGHPLEGAEMI 995 Query: 975 LRKMGIKGYEESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 LR K E +A + G ++ +A ++ S +++ T++G T + E Sbjct: 996 LR----KNSENRIADLLTSDIPDGTSVTIAGIISSLERRVTKQGKPWAKATVEDLDAAIE 1051 Query: 1029 ANFFP 1033 FFP Sbjct: 1052 CLFFP 1056 >gi|313886877|ref|ZP_07820581.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312923674|gb|EFR34479.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica PR426713P-I] Length = 1287 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 344/1060 (32%), Positives = 539/1060 (50%), Gaps = 104/1060 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63 +V L VHS YS+L+G + ILDK A P IA+TD ++ F+ A Sbjct: 32 YVPLHVHSHYSILDGMAPVEKILDKAVACGMPGIALTDHGAMYGIKNFTNYANDKINGDK 91 Query: 64 -----------------------------------AAGIQPIIGCQLDIDMQDNLKMTNQ 88 + + I+GC++ + + Sbjct: 92 LAQIKSLRKQIKELEADASNADEIARIKGEIKTIEQSLFKAIVGCEVYVARRSLELKDKD 151 Query: 89 GKTPFPTVPSI-------VLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVRICLSWLQEIG 140 K P SI +LL +GY+ LI++VS + + G+ RI L E Sbjct: 152 AKDPDNPTRSIDRSGYHLILLAKNLQGYRNLIKMVSIAW--EHGEYYKPRIDKKLLSE-H 208 Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR------GYDR 194 EG+I + G I + A K L +K+ FG+ Y+ + H G + Sbjct: 209 HEGIIASSACLGGEIAQHILHGRLDEARKTALWYKETFGEDYYLEIMLHPNSDPLGGQET 268 Query: 195 YRES-----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 Y + +V+++ + ++ATN++ FL+EED EAHD L+ + ++ +S +R R T Sbjct: 269 YHKQLQVAQEVIKMGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPISDPNRMRYT 328 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 +LK+ EM ++F+D P+ LENT+EI + + HAP++P F E + E++ Sbjct: 329 KQEWLKSPEEMTALFADYPDVLENTLEICNKVEYYSIDHAPLMPHF---ELPEGFASEDD 385 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR+ G + R + ++R+D EL VI M F GYFL+V DFI A++ Sbjct: 386 YLRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVVQDFIAAARQ 439 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 + VGPGRGS AGS AY L+IT I+P+++ LLFERFLNPDR+SMPD DIDF R Sbjct: 440 LGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDDKNRWR 499 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 V+ +V NKYG + V+ IIT ++ K A++ V R ++P Q +RLCKLIP+ V Sbjct: 500 VLEWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRAPEGVKH 559 Query: 490 ----QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + ++ FREA ++ + + + +++LEG HA G++I P+S +VP Sbjct: 560 LTLDWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPVSDVVP 619 Query: 545 MYRDVRSDLP----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 + + D V Q+ K IE GLIK DFLGL+TL+++ +L + G+ +D+ Sbjct: 620 LSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALQNIKMSYGIDLDID 679 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ L + T+G FQ ES GMR+ L+ ++P +D++A+ +LYRPGP+DNI Sbjct: 680 TIPVDDPKTFELYSRGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGPMDNIP 739 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK G+++I P ++P LK+T G+ +YQEQVM ++++L ++ ++D LR+AMGK Sbjct: 740 TFIERKLGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDSDSLRKAMGK 799 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM K + +F+ G + I++ KFA Y FNKSH+ YA ++YQTA++ Sbjct: 800 KKEKEMAKYRIKFVENGVAKGHPRDTLERIYDGWQKFASYAFNKSHSVCYAWVAYQTAYL 859 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP +F+AA +T +K+ K+ ++ + +++ P VN F + I + Sbjct: 860 KAHYPAQFMAALLTCNQSKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSANKEGVIRFG 919 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L I VG + A I+ E + + DF R D +RR LE+L+ +GA D FG Sbjct: 920 LGGISHVGLSVAEAIIQEREEHGAYQDVYDFFQRTDLSNCSRRALEALILSGAFDNFGIE 979 Query: 898 RMQLLQS-----------------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 R L + +Y + +E RT ++F + L Sbjct: 980 REVYFAPIAKSGVSSLSYGKDETFLTALMQYGKILESERTQVQASLFGDSDPSVKLPKPL 1039 Query: 941 EKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKM 978 VE S R EQ +G Y S HPLD Y I+ + Sbjct: 1040 PPKDVEPWSHLERLTKEQTYIGMYLSAHPLDPYAFIIENL 1079 >gi|281423616|ref|ZP_06254529.1| DNA polymerase III, alpha subunit [Prevotella oris F0302] gi|281402168|gb|EFB32999.1| DNA polymerase III, alpha subunit [Prevotella oris F0302] Length = 1235 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 376/1127 (33%), Positives = 571/1127 (50%), Gaps = 127/1127 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-------QKAC 63 F+HL VH+ YS+L+G ++N+++K + +AITD +F EF+ +K Sbjct: 4 FIHLHVHTYYSVLDGQSKISNLVNKAVENGMKGMAITDHGVMFGIKEFADYCAGVNKKRK 63 Query: 64 AAGIQP---IIGCQLDI---DMQDNLKM--TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 A G++P I+GC++ + +QD +K N G +++L GY+ LI+L Sbjct: 64 ADGLEPFKPILGCEMYVARHRLQDKVKEHGDNSGY-------HLIVLAKNYNGYKNLIKL 116 Query: 116 VSRMYLLDQG----KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 VS+ ++ +G ++ R+ L E E LI+ + +G + + + A + Sbjct: 117 VSKSWM--EGYYYRPRTDRVEL----EKYHEDLIVCSACIAGEVPSKIIKDDLEGAREAC 170 Query: 172 LTFKKLFGDRLYVNLQRHRGYD----RYRES---------QVVQLAYTHELPLVATNNSL 218 + ++FGD Y+ LQRH D RE+ +++ A + + ++ TN+ Sbjct: 171 EWYHRVFGDDYYLELQRHEVKDPTILANREAFPLQQKANKVLLEFAKEYGIKVICTNDVH 230 Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278 F +E EAHD L+ ++ + +R R + + K R EM IFSD+PEAL NT+EI Sbjct: 231 FEDKETAEAHDHLLCLSTGKDLDDPNRMRYSKQEWFKTREEMNDIFSDVPEALSNTLEIF 290 Query: 279 RRCSFILQVHAPILP----------------RFIEKEC-----------DDIQKEEENEL 311 + H PI+P +F E + + + +EE ++ Sbjct: 291 DKVELYSIEHGPIMPFFPIPESFGTEEGWRKKFTEADLYREFTSDENGENPLSQEEGQKV 350 Query: 312 -----------RNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357 R K A +LA + Y + R+ ++FEL+V+ M F GYF Sbjct: 351 IDRLGGYDKIYRIKFEADYLAKLAYDGAKRLYGDPVPDNVREHINFELHVMKTMGFPGYF 410 Query: 358 LIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 LIV DFI A+ + + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++P Sbjct: 411 LIVQDFINAARTDLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLP 470 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DF D R +V+R+V +KYGHE A IIT+ S+ K +++DV R ++P + + LC Sbjct: 471 DIDTDFDDDGRGKVLRWVMDKYGHENCAHIITYASMATKNSIKDVARVERLPLDKSNFLC 530 Query: 477 KLIPNDPAHPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGI 532 K IP+ + + AI REA ++ DP ++ ++ LEG R HA G Sbjct: 531 KAIPDRLPDGLKMNLTNAIKCTPELREAEVSQDPRERNTIKYAKMLEGTVRGTGIHACGF 590 Query: 533 VIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 +I P+S VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ Sbjct: 591 IICRDPISNWVPVSTADDPDFPGLKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACK 650 Query: 588 FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + + G +DL IP DD TY L T+G FQ ES GM++ L + P ED+IA+ Sbjct: 651 VVKKTVGDDIDLDNIPIDDELTYQLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAM 710 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 +LYRPGP+D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 711 NALYRPGPMDYIPDFIKRKNDPTLVTYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFT 770 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 E+D LR+AMGKK K +D K +FI +NG + I+ KFA Y FNKSHA Sbjct: 771 RGESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHA 830 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 Y+ ++YQTA+MK HYP E++AA MT + +I K ++ + I + P VN Sbjct: 831 TCYSWVAYQTAYMKAHYPAEYMAALMTRRFSQITEITKLMEECQSMKIATLGPDVNESYS 890 Query: 827 DFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLES 884 +F V I + L+AIKG+G T A I+ E + P+ + DF RVD +NR+ ES Sbjct: 891 EFGVNKKGEIRFGLSAIKGMGETAALSIVKERETNGPYKDIYDFAERVDYGCVNRKAFES 950 Query: 885 LVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEK------ 931 L +G D F + R Q + LD + +Y Q ++ + ++F E Sbjct: 951 LALSGGFDGFEFRREQYFAAGMKGDVFLDTLVRYGQLYQQEQREAKNSLFGGESAVEISR 1010 Query: 932 ---GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--- 985 G D T+E R E+ ++G Y S HPLD Y IL+ M E Sbjct: 1011 PVPGNAEDWSTIE---------RLNRERDLVGIYLSAHPLDEYGVILKSMCNTHCVEIDK 1061 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + I + +V + K T+ G G+VT + E FF Sbjct: 1062 KEELAKKEEISIGGIVTGVKSKFTKNGKPCGFVTLEDFEGSGELAFF 1108 >gi|256847144|ref|ZP_05552590.1| DNA polymerase III [Lactobacillus coleohominis 101-4-CHN] gi|256715808|gb|EEU30783.1| DNA polymerase III [Lactobacillus coleohominis 101-4-CHN] Length = 1114 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 348/1036 (33%), Positives = 563/1036 (54%), Gaps = 67/1036 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S L V S+YSLL+ + +++ AIA+TD N L+ A++F A AGI+P Sbjct: 5 SVTPLDVTSTYSLLQSTIRPRDLVKAAREQGYSAIALTDENVLYGAVDFYNAAQQAGIRP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + + ++ KT ++ ++ +GY L++L S + + + +V Sbjct: 65 IIGLKLQLTFAE----LDERKT------TVTVIEKNQQGYTELMQL-STQQMTSKAELTV 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQR 188 + +++I +I+ P + +K L F GD +NL Sbjct: 114 Q---DVVKQIDNCAIII------KPTMAILTAHRDPTIQKLLSWFGNQPGDIFMGINLV- 163 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247 D + L+ + L L+A +L Y VL A+ + S Sbjct: 164 ---LDPTERQVLKDLSLQNGLKLIADEPVEYLEANQYFPTQVLRAIGDGRQIESPLSTAH 220 Query: 248 VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 T HYL+N + + + L +A+EN + ++ SF + P+LP F E + + Sbjct: 221 NTGQHYLRNAQNLTVAYERAGLADAVENNEVLVQKSSFKINFQKPVLPEFAVPEGVNTAQ 280 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR + GL+ R +A + YR RL+ EL VI +M F YFLIV D + Sbjct: 281 Y----LRQLCIIGLKKR----HLAPNTTIKQYRDRLERELTVIHQMGFDDYFLIVWDIMA 332 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A + I GPGRGS AGS+ AYAL ITD+DPL + LLFERFLNP+R MPD D+D + Sbjct: 333 FAHRKQITTGPGRGSAAGSLVAYALAITDVDPLEYGLLFERFLNPERAQMPDIDLDIPDN 392 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EV+ YV +YGHERVAQIITFG+L A+ +RDVGR +P QV+++ + H Sbjct: 393 RRQEVLEYVHQRYGHERVAQIITFGTLAARQVVRDVGRVFGVPKYQVEQIIDTLRVLSRH 452 Query: 486 -PVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 V+L +AI R DP ++E+++KLEGL RH STHAAG+V+ PL ++V Sbjct: 453 RSVTLAEAIQQSQPLRNLMTDDPINKLVIEVARKLEGLPRHYSTHAAGVVLSATPLKEIV 512 Query: 544 PMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 P+ + + L +TQF + +E GL+K DFLGL+ L+++ ++L + Q D++ +P Sbjct: 513 PLQPGNDEAGLLMTQFPKEIVESVGLLKMDFLGLRNLSIMDRALAIIHQTTPGFDITKVP 572 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DH+T L T GIFQ ES+G+RQ L+ + PD EDI+A+ +LYRPGP+ NI + Sbjct: 573 LNDHKTIQLFKQGLTDGIFQFESTGIRQTLQQLAPDNFEDIVAVNALYRPGPMQNIPHFI 632 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+E I + P+L T G+++YQEQVMQ+A ++G+SL +AD+LRRAM KK + Sbjct: 633 ARKHGQEPIQLPDQSLQPILGPTYGILVYQEQVMQVASKMAGFSLGQADLLRRAMSKKKQ 692 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 M+ ++RFISGA KNG ++ IA +F + +FA+YGFN+SHA AY+ ++Y+ A++K H Sbjct: 693 ATMESMRQRFISGAVKNGYNQPIAEQVFNYIDQFANYGFNRSHAVAYSKMAYEMAYLKCH 752 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 + F A + +E N++K++ DA++F ++I+ P++N +++ + + +I + I Sbjct: 753 FTTAFFTALLAIE-PNMDKVRLHLADAQRFGVRIIGPNINQSQMEYSLQNGQIVMGFSMI 811 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KG+ + I+E F +L DF R+ K ++E L++AGA D GY+R +++ Sbjct: 812 KGMRRDFIQAIIEERKAGQFKNLPDFVQRLGEKWQKAALIEPLIYAGAFDQLGYNRAEMI 871 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVENS-SVRFENEQRVL 959 + L + FA + +F +D + K E + R + EQ L Sbjct: 872 EGLSGV------------------FAGNEFSFQSADLQPIMKRRQEYPLTYRLQKEQEYL 913 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSR-IGW 1017 G Y SGHP+ Y+ + ++ + + + ++ G++++L ++ +Q T+K + + + Sbjct: 914 GMYLSGHPVTQYQRVRQQQ----HTQRIMDLKPGSSVKLLVLLNQIRQINTKKTHQPMAF 969 Query: 1018 VTFSEPAKEYEANFFP 1033 T S+ + FP Sbjct: 970 ATASDETGSMDITIFP 985 >gi|323464219|gb|ADX76372.1| DNA polymerase III subunit alpha [Staphylococcus pseudintermedius ED99] Length = 1063 Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust. Identities = 351/1024 (34%), Positives = 543/1024 (53%), Gaps = 84/1024 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H++Y LL ++++ + + AIAITD N ++ +F GI+P++G Sbjct: 4 HLNIHTAYDLLNSSITIEGAVQRTIELGYSAIAITDLNVMYGVPQFYDACIQHGIKPLLG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + + Q N V V++ EG Q L +L S I Sbjct: 64 MTVYLTDQLN-------------VLEAVVIAKNNEGLQNLFKLSSD------------IK 98 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 ++ ++ + ++ FN + ++ FK++ + + + G Sbjct: 99 VNRIKHVSI-------------YEKKDLFNDT------VVIFKQMTNQEKHWHEEMPDGV 139 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 + + Q + ELP V + + ED A VL A+ +T V+ D +H Sbjct: 140 TCFTDHQSAEDC---ELPKVLMQAAYYEKTEDKNALKVLHAIRDNTKVNLVDSHETPTEH 196 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 + S F++ L T EIA C L+ H +LP F+ + Sbjct: 197 IYDVDALYDSQFAE--AWLARTDEIANMCDAKLEYHQALLPEFVTPDG------------ 242 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + A A L L + G YR+RL +E +VI +M ++ YFLIV+D I++AK N + Sbjct: 243 SSANAYLWAELERALADFGLTEARYRKRLKYEYDVITQMGYADYFLIVSDLIRYAKSNGV 302 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS+ +Y L IT IDPL++ LLFERFLNP+R++MPD DIDF +R++VI Sbjct: 303 MVGPGRGSSAGSLVSYLLNITTIDPLQYDLLFERFLNPERVTMPDIDIDFEDTQREKVIH 362 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YVQ KYG RVA I+TFG L AKA RDVGR + + + KLIP+ V+L Sbjct: 363 YVQQKYGDYRVAGIVTFGHLLAKAVARDVGRVMGFDETTLSEASKLIPSKLG--VTLDEA 420 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 + RF+ + +R E +KLEGL R+ STHAAG+++ D+PL Q +P+ Sbjct: 421 YKEERFKAFVHRNHRHERWFEYCKKLEGLPRNTSTHAAGVIVNDQPLYQSIPLTEGETGL 480 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFDDHETYH 610 L TQ+ M E+ GL+K DFLGL+ LT++ + + + R +KVD+ + IPFDD + Sbjct: 481 L--TQWTMTEAERIGLLKIDFLGLRNLTIIHQIIKQVT-RDLKVDIDVEQIPFDDVHVFE 537 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670 LL+ T GIFQLES G+R+ L+ +QP+ EDI+A+ SLYRPGP++ I Y R++ + Sbjct: 538 LLSRGDTTGIFQLESEGVRRVLQKLQPEHFEDIVAVTSLYRPGPMEEIPTYIRRRHDPSQ 597 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 + +HP + P+LK T GVIIYQEQ+MQIA +G+S EAD+LRRAM KK +E ++ +++ Sbjct: 598 VTYLHPDLAPILKRTYGVIIYQEQIMQIASQFAGFSYGEADILRRAMSKKNREVLENERQ 657 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 FI GA + G ++T++ IF+L+ KFADYGF ++HA +Y+ I+Y ++K HYP F A Sbjct: 658 HFIDGAKEKGYAETLSGQIFDLILKFADYGFPRAHAVSYSKIAYIMTYLKVHYPAYFYAN 717 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850 ++ + N K Q+A+Q +I I P +N + +Y SL AIKGVG T Sbjct: 718 ILSNVIGNDMKTNMMIQEAKQQHITIHGPHINKSQWRYVATQEGVYISLGAIKGVGYQTV 777 Query: 851 RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + IM E P+ DFC+R+ S+ +RR LE+L+ GA+DCFG +R LLQS+D Sbjct: 778 QTIMNERREQGPYKDFFDFCNRIPSRLRSRRTLEALILTGAMDCFGKNRATLLQSIDK-- 835 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 V + ++ A + E+ + S + E++ LGFY + HP++ Sbjct: 836 -----VSDTDVSIDTDLLASVATIKQEYAETEEMPSQQLS---DFEKQYLGFYVTAHPVE 887 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +GI + V T + + L A+ V +T++G ++ +V ++ + Sbjct: 888 KAFKQKQYLGIFQLQAHV-THQPILVTLDAVRVI----RTKQGQQMAFVELNDGITTMDG 942 Query: 1030 NFFP 1033 FP Sbjct: 943 VIFP 946 >gi|328881766|emb|CCA55005.1| DNA polymerase III alpha subunit [Streptomyces venezuelae ATCC 10712] Length = 1179 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 363/1077 (33%), Positives = 571/1077 (53%), Gaps = 74/1077 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAKKAGVT 63 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117 PIIG + + + + N + G+ P + + + G L L S Sbjct: 64 PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTIWAANNTGLHNLFRLSS 122 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Y ++ R+ + + +EGLI TG SG + A K ++ + Sbjct: 123 DAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSASEYQDI 181 Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ + Sbjct: 182 FGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAAAHDALLCIQ 241 Query: 236 HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSF-ILQVHAPI 291 +S DR R +YLK+ EM ++ S E NT+ +A + S + V + Sbjct: 242 TGKNLSDPDRFRFDGTGYYLKSTDEMYAVDSSDAWQEGCRNTLLVAEQVSTDGMFVEKNL 301 Query: 292 LPRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P+F DI + E R + + G+ R G +D +++++E++ I Sbjct: 302 MPKF------DIPEGYTEVTWFREETMRGMHRRFPDGI------PEDRMKQVEYEMDTII 349 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F GYFL+VADFI WAKK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLN Sbjct: 350 SMGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLN 409 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY Sbjct: 410 PERISMPDVDIDFDERRRVEVIRYVTEKYGSDKVAMIGTYGKIKAKNAIKDSARVLGYPY 469 Query: 470 SQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLEG 520 + DRL K +P D + L I D S R+ EA +P V ++++ ++ +EG Sbjct: 470 AMGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTARGVEG 529 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT Sbjct: 530 LVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLT 589 Query: 581 LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ ++ + A +G+ +DL +P DD +T+ LL TLG+FQ + MR L M+PD Sbjct: 590 IMDDAVKMVKANKGIDLDLLALPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDN 649 Query: 640 IEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQE 693 EDI A+ +LYRPGP +++ Y RKNG+++I IHP ++ L+E T G+I+YQE Sbjct: 650 FEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEKPLEEVLAVTYGLIVYQE 709 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QV + AQ+++GYSL EAD+LRR MGKK EE+ K F +GA K G S ++++L Sbjct: 710 QVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVIFEAGAKKKGFSDEAIKALWDVL 769 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNK+H+AAY ++SY TA++K +YP E++A +T D+ +K + + R+ Sbjct: 770 VPFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRMG 829 Query: 814 IQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSR 871 I+++PP+VN +F GD+ I + L+A++ VGT I++ A + + DF + Sbjct: 830 IKVLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVESIIKTRKAKGKYSTFPDFLDK 889 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V++ N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 890 VEAVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLF---- 945 Query: 932 GTFSDKITLEK---FSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKG 982 G D+ T E VE S V +E E+ +LG Y S HPL + +L Sbjct: 946 GGMGDESTDEPGFGLDVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGIEHVLSDK---- 1001 Query: 983 YEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +++ + G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1002 TDAAISQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|311899295|dbj|BAJ31703.1| putative DNA polymerase III subunit alpha [Kitasatospora setae KM-6054] Length = 1183 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 359/1071 (33%), Positives = 565/1071 (52%), Gaps = 62/1071 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YS+L+GA + + PAIA++D N+F A EF A + ++P Sbjct: 4 SFAHLHVHTEYSMLDGAAKNGKLFAEAERLGMPAIAMSDHGNMFGAYEFFHAAAKSAVKP 63 Query: 70 IIGCQLDID-----MQDNLKMTNQGKTPFPT-------------VPSIVLLVSTAEGYQR 111 IIG + + ++ + G+ P + + + A G + Sbjct: 64 IIGIEAYVAPSSRFLKKQVFWAPGGQRPTGSDGEGGKDVSGGGRYTHMTMWAQNATGLRN 123 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L +L S + ++ R+ + T G+I TG SG + + A K Sbjct: 124 LFKL-SSLASMEGYYMKPRMDRELIAANAT-GIIATTGCPSGEVQTRLRLGQYEEAVKAA 181 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ +FG + ++ L H +R + +++LA +PL+ATN+S +++ + +AHD Sbjct: 182 GAYQDIFGKENYFLELMDHGLSIERDVRADLLRLAKELGIPLLATNDSHYVTADQADAHD 241 Query: 230 VLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 L+ V V KD P +Y+K EM +F DLPEA +NT+ IA R Sbjct: 242 SLLCVG---VGKNKDDPNRFKFNGSGYYVKTSEEMRELFRDLPEACDNTLAIAERIESYE 298 Query: 286 QVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 +V + +P+F E + + + LR K AGL+ R +Q+ R++ Sbjct: 299 EVFTYVDRMPQFDVPEGE----TQASFLRKKIAAGLQHRYGDNP------SQEVLDRVEL 348 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E+ VI M F YFL+VAD Q+ + N IPVGPGRGS AGS+ +Y IT +DPL LL Sbjct: 349 EMGVITPMGFDAYFLVVADICQYGRDNGIPVGPGRGSAAGSMVSYLTGITQLDPLEHDLL 408 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R++ PD DIDF +RD+++RYV +KYG AQ+ TFG+++AKAA++D R Sbjct: 409 FERFLNPERINPPDVDIDFDDRQRDQMVRYVTDKYGSAYTAQVNTFGTIKAKAAVKDANR 468 Query: 464 ALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADD--------SRFREARLADPSVDRLLEI 514 L P+S DR+ K +P D V L + ++ + R +P V ++++ Sbjct: 469 ILGYPFSMGDRITKAMPPDVMGKGVPLADLFNEKHPRYNEGTEIRSLYENEPDVKKIIDT 528 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 +EGL R HAA +++ PL +L+P++ + +T F+ E GLIK DFL Sbjct: 529 GLGIEGLIRGTGVHAAAVILSSTPLLELIPLHMRDKDGTIITGFDYPSCEAMGLIKMDFL 588 Query: 575 GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ L ++ + + A RGV VD+ IP DD TY LL TLG+FQL+ MR L Sbjct: 589 GLRNLGIIDHCIKIVKANRGVDVDIDNIPIDDPTTYQLLARGDTLGVFQLDGGPMRALLR 648 Query: 634 GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687 M+P DI A+ +LYRPGP +++ Y RKNG+++I+ IHP ++ LKE T G Sbjct: 649 LMKPTEFADISAVSALYRPGPMGMNSHTNYALRKNGQQEIIPIHPELEEPLKEVLGPTYG 708 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQV + AQ+L+GYSL +AD+LRRAMGKK KE ++K+ F +G + G S Sbjct: 709 LIVYQEQVQRAAQVLAGYSLGQADLLRRAMGKKKKEVLEKEFVPFHAGCKERGYSDEAIQ 768 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++++L FA Y FNKSH+AAY ++SYQTA++K +YP E++AA +T D+ +K+ + Sbjct: 769 AVWDVLVPFAGYAFNKSHSAAYGLVSYQTAYLKANYPAEYMAALLTSVADDKDKMAIYLA 828 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLE 866 + R I+I+ P VN VDF + + + L A++ VG ++ A + S Sbjct: 829 ECRAMGIRILSPDVNESVVDFTAVGSDVRFGLKAVRNVGVPVIESLVATREAKGKYTSFA 888 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF +V+ N+R ++SLV AGA D G++R+ L ++ V+K + +++ Sbjct: 889 DFLDKVELVVCNKRTVDSLVKAGAFDSLGHTRLSLSTVHESAIDAVTGVKKQQAIGQDDL 948 Query: 927 FAHEKGTFSDKITLEKFSVENSSVR---FENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 FA G + I L+ + R E+ +LG Y S HPLD + IL K Sbjct: 949 FAMLGGDDTPAIGLDFQLTDREWPRKQLLGLEREMLGLYVSSHPLDGAEHILTKNRDVSL 1008 Query: 984 EESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + + R +RL+ ++ ++ + G+ +T ++ E FFP Sbjct: 1009 VDLLNSGRTEGEVRLSGLITGVDRRINKAGNAWAIITLADRDGSIEVLFFP 1059 >gi|319892748|ref|YP_004149623.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius HKU10-03] gi|317162444|gb|ADV05987.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius HKU10-03] Length = 1063 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 351/1024 (34%), Positives = 543/1024 (53%), Gaps = 84/1024 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H++Y LL ++++ + + AIAITD N ++ +F GI+P++G Sbjct: 4 HLNIHTAYDLLNSSITIEGAVQRTIELGYSAIAITDLNVMYGVPQFYDACIQHGIKPLLG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + + Q N V V++ EG Q L +L S I Sbjct: 64 MTVYLTDQLN-------------VLEAVVIAKNNEGLQNLFKLSSD------------IK 98 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 ++ ++ + ++ FN + ++ FK++ + + + G Sbjct: 99 VNRIKHVSI-------------YEKKDLFNDT------VVIFKQMTNQEKHWHEEMPDGV 139 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 + + Q + ELP V + + ED A VL A+ +T V+ D +H Sbjct: 140 TCFTDHQSAEDC---ELPKVLMQAAYYEKAEDKNALKVLHAIRDNTKVNLVDSHETPTEH 196 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 + S F++ L T EIA C L+ H +LP F+ + Sbjct: 197 IYDVDALYDSQFAE--AWLARTDEIANMCDAKLEYHQALLPEFVTPDG------------ 242 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + A A L L + G YR+RL +E +VI +M ++ YFLIV+D I++AK N + Sbjct: 243 SSANAYLWAELERALADFGLTEARYRKRLKYEYDVITQMGYADYFLIVSDLIRYAKSNGV 302 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS+ +Y L IT IDPL++ LLFERFLNP+R++MPD DIDF +R++VI Sbjct: 303 MVGPGRGSSAGSLVSYLLNITTIDPLQYDLLFERFLNPERVTMPDIDIDFEDTQREKVIH 362 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YVQ KYG RVA I+TFG L AKA RDVGR + + + KLIP+ V+L Sbjct: 363 YVQQKYGDYRVAGIVTFGHLLAKAVARDVGRVMGFDETTLSEASKLIPSKLG--VTLDEA 420 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 + RF+ + +R E +KLEGL R+ STHAAG+++ D+PL Q +P+ Sbjct: 421 YKEERFKAFVHRNHRHERWFEYCKKLEGLPRNTSTHAAGVIVNDQPLYQSIPLTEGETGL 480 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFDDHETYH 610 L TQ+ M E+ GL+K DFLGL+ LT++ + + +A R +KVD+ + IPFDD + Sbjct: 481 L--TQWTMTEAERIGLLKIDFLGLRNLTIIHQIIKQVA-RDLKVDIDVEQIPFDDVHVFE 537 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670 LL+ T GIFQLES G+R+ L+ +QP+ EDI+A+ SLYRPGP++ I Y R++ + Sbjct: 538 LLSRGDTTGIFQLESEGVRRVLQKLQPEHFEDIVAVTSLYRPGPMEEIPTYIRRRHDPSQ 597 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 + +HP + P+LK T GVIIYQEQ+MQIA +G+S EAD+LRRAM KK +E ++ +++ Sbjct: 598 VTYLHPDLAPILKRTYGVIIYQEQIMQIASQFAGFSYGEADILRRAMSKKNREVLENERQ 657 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 FI GA + G ++T++ IF+L+ KFADYGF ++HA +Y+ I+Y ++K HYP F A Sbjct: 658 HFIDGAKEKGYAETLSGQIFDLILKFADYGFPRAHAVSYSKIAYIMTYLKVHYPAYFYAN 717 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850 ++ + N K Q+A+Q +I I P +N + +Y SL AIKGVG T Sbjct: 718 ILSNVIGNDTKTNMMIQEAKQQHITIHGPHINKSQWRYVATQEGVYISLGAIKGVGYQTV 777 Query: 851 RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + IM E P+ DFC+R+ + +RR LE+L+ GA+DCFG +R LLQS+D Sbjct: 778 QTIMNERREQGPYKDFFDFCNRIPGRLRSRRTLEALILTGAMDCFGKNRATLLQSIDK-- 835 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 V + ++ A + E+ + S + E++ LGFY + HP++ Sbjct: 836 -----VSDTDVSIDTDLLASVATIKQEYAETEEMPSQQLS---DFEKQYLGFYVTAHPVE 887 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +GI + V T + + L A+ V +T++G ++ +V ++ + Sbjct: 888 KAFKQKQYLGIFQLQAHV-THQPILVTLDAVRVI----RTKQGQQMAFVELNDGITTMDG 942 Query: 1030 NFFP 1033 FP Sbjct: 943 VIFP 946 >gi|325270548|ref|ZP_08137148.1| DNA-directed DNA polymerase III alpha subunit [Prevotella multiformis DSM 16608] gi|324987124|gb|EGC19107.1| DNA-directed DNA polymerase III alpha subunit [Prevotella multiformis DSM 16608] Length = 1239 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 374/1109 (33%), Positives = 565/1109 (50%), Gaps = 107/1109 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------ 64 +VHL VH++YS+L+G + ++DK AD +AITD +F EFS CA Sbjct: 4 YVHLHVHTNYSILDGQSKVTRLVDKAVADGMKGMAITDHGVMFGIKEFSD-YCAKVNKGR 62 Query: 65 -----AGIQPIIGCQLDI---DMQDNLK--MTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 A +P+ GC++ + M D K N G +++L GY+ LI+ Sbjct: 63 KEKGEAPFKPVFGCEMYVARRSMHDKDKGMHDNSGY-------HLIVLAKNHHGYKNLIK 115 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 LVS+ ++ D R L++ E LI+ + +G I + + A + + Sbjct: 116 LVSKAWV-DGYYYKPRTDREQLEKY-HEDLIVCSACIAGEIPSKIIHDDIEGAREACEWY 173 Query: 175 KKLFGDRLYVNLQRHRGYD----RYRESQVVQ---------LAYTHELPLVATNNSLFLS 221 ++FGD Y+ LQRH D RE+ +Q A + + ++ TN+ F Sbjct: 174 HRVFGDDFYLELQRHEVKDPTLAANREAYPLQQKANRVLLRFAREYGIKVICTNDCHFED 233 Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 +E EAHD L+ ++ + + R R + + K R EM +FSD+PEAL NT+EI + Sbjct: 234 KETAEAHDHLLCISTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKV 293 Query: 282 SFILQVHAPILPRF-------IEKEC------DDIQKE---EEN-------ELRNKAVAG 318 H PI+P F E E DD+ +E +EN E K +A Sbjct: 294 EIYSIDHGPIMPFFPIPEDFGTEGEWREKFSEDDLYREFTTDENGEHPLPPEEGQKVIAR 353 Query: 319 LE---------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIV 360 L +LA + Y + + + + FEL+V+ M F GYFLIV Sbjct: 354 LGGYEKIYRIKFEADYLAKLAYDGAKRLYGDPLSDEVKNHIRFELHVMKTMGFPGYFLIV 413 Query: 361 ADFIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 DFI A+ K + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D Sbjct: 414 QDFINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDID 473 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 DF D R +V+++V +KYGHE A IIT+ ++ K +++DV R ++P + LCK I Sbjct: 474 TDFDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVERLPLDVANGLCKAI 533 Query: 480 PNDPAHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIG 535 P+ + + AI R ++A +++ + +R ++ ++ LEG R HA G +I Sbjct: 534 PDRLPDGMKMNLTNAIRCTPRLQDAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFIIC 593 Query: 536 DRPLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 P+ VP+ D +PVTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 594 RNPIDDWVPVSTASDPDFPEQKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVIR 653 Query: 591 QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 Q G VDL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ +L Sbjct: 654 QTTGDVVDLDNIPIDDELTYRLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNAL 713 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGP+D I + RK+ + P ++ LK+T G+ +YQEQVM +++ L+ ++ E Sbjct: 714 YRPGPMDYIPDFIKRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGE 773 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 +D LR+AMGKK K +D+ K +FI +NG I I+ KFA Y FNKSHA Y Sbjct: 774 SDALRKAMGKKKKAIVDQMKPKFIRQGQENGHDPQILEKIWSDWEKFASYAFNKSHATCY 833 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 + ++YQTA++K HYP E++AA MT + +I K ++ + I + P VN F Sbjct: 834 SWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKIATLGPDVNESRTGFG 893 Query: 830 V-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V G I + LAAIKG+G + A I+ E A+ P+ + DF RVD +NR+ ESL + Sbjct: 894 VNGKGEIRFGLAAIKGMGASAAESIVREREANGPYKDIYDFAERVDLSNVNRKAFESLAY 953 Query: 888 AGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 +G D FG R Q LD I +Y Q + + + ++F Sbjct: 954 SGGFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAEQQNSLFGGMDAVEVMHPVA 1013 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-----GYEESVATIRG-NN 994 K + + E+ ++G Y S HPLD Y IL M G + +A + + Sbjct: 1014 PKTENWPAIEKLNKERELVGIYLSAHPLDEYSVILNNMCNTRCPQIGRDADLAALSALDE 1073 Query: 995 IRLAAMVVSKQQKKTRK-GSRIGWVTFSE 1022 + +V + ++ ++K G G+VT + Sbjct: 1074 VTFGGIVTAVNERFSQKTGKPFGFVTIED 1102 >gi|302345204|ref|YP_003813557.1| putative DNA polymerase III subunit alpha [Prevotella melaninogenica ATCC 25845] gi|302149818|gb|ADK96080.1| putative DNA polymerase III subunit alpha [Prevotella melaninogenica ATCC 25845] Length = 1239 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 372/1114 (33%), Positives = 568/1114 (50%), Gaps = 117/1114 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 +VHL VH++YS+L+G + ++DK AD +AITD +F EF+ Sbjct: 4 YVHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFADYCAKVNKGRK 63 Query: 67 ------IQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PI GC++ + M D K + + +++L GY+ LI+LVS Sbjct: 64 EKGEEPFKPIFGCEMYVARRTMHDKDKSMHDN-----SGYHLIVLAKNYTGYKNLIKLVS 118 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 ++ D R L++ EGLI+ T +G + + + A + + ++ Sbjct: 119 NAWV-DGYYYRPRTDREQLEKY-HEGLIVCTACIAGEVPNKIIHDDIEGAREACEWYHRV 176 Query: 178 FGDRLYVNLQRHRGYD----RYRESQVVQ---------LAYTHELPLVATNNSLFLSEED 224 FGD Y+ LQRH D RE+ +Q A + + +V TN+ F +E Sbjct: 177 FGDDFYLELQRHEVKDPSLVANREAYPLQQKANKVLMKFAQEYGIKIVCTNDCHFEDKET 236 Query: 225 YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284 EAHD L+ ++ + + R R + + K R+EM IFSD+PEA+ NT+EI + Sbjct: 237 AEAHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRAEMNEIFSDIPEAMTNTLEILNKVETY 296 Query: 285 LQVHAPILPRF-------IEKEC------DDIQKE------EENEL-------------- 311 H PI+P F E+E +D+ KE EN L Sbjct: 297 DINHGPIMPFFPIPEDFGTEEEWKKKFTEEDLYKEFTTDENGENPLPPEEGQKVIDRLGG 356 Query: 312 -----RNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADF 363 R K A +LA K Y + + + + FEL+V+ M F GYFLIV DF Sbjct: 357 YEKMYRIKFEADYLAKLAYDGAKKLYGDPLSDEVKNHIRFELHVMKTMGFPGYFLIVQDF 416 Query: 364 IQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 I A++ ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF Sbjct: 417 INAARQELDVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPDRVNLPDIDTDF 476 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 D R V+++V +KYGHE A IIT+ ++ K +++DV R ++P + LCK IP Sbjct: 477 DDDGRGRVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPVDVSNALCKAIPER 536 Query: 483 PAHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRP 538 + + + AI + A +++ +R ++ ++ LEG R HA G +I P Sbjct: 537 LPNGMKMNLTNAIKCTPELQNAEVSEDIRERNTIKYAKMLEGTVRGTGIHACGFIICRNP 596 Query: 539 LSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592 + + VP+ D +PVTQ++ IE GLIK DFLGLKTL+ L+++ + Q R Sbjct: 597 IDEWVPISTATDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKQTR 656 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 G +DL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ +LYRP Sbjct: 657 GDVIDLEKIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRP 716 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+D I + RK+ + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D Sbjct: 717 GPMDYIPDFIKRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDA 776 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LR+AMGKK+K +DK K +FI +NG I I+ KFA Y FNKSHA Y+ + Sbjct: 777 LRKAMGKKMKAIVDKMKPKFIKQGQENGHDPQILEKIWSDWEKFASYAFNKSHATCYSWV 836 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTA+MK HYP E++AA MT + +I K ++ + I + P VN + F V Sbjct: 837 AYQTAYMKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIATLGPDVNESQIGFGVNK 896 Query: 833 N-RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + I + L+AIKG+G + A I+ E + P+ + DF RVD +NR+ ESL ++G Sbjct: 897 HGEIRFGLSAIKGMGASAADSIVRERMENGPYKDIYDFAERVDLSNVNRKAFESLAYSGG 956 Query: 891 LDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL--- 940 D FG R Q LD I +Y Q + + + ++F D I + Sbjct: 957 FDSFGLQREQYFAVTAKGDLFLDTIVRYGQLFQAEKAQQQNSLFGG-----MDAIDVVHP 1011 Query: 941 -----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-----GIKGYEESVATI 990 EK+ V + E+ ++G Y S HPLD Y +L M + G ++ + Sbjct: 1012 IAPKAEKWPVIE---KLNKERELVGIYLSAHPLDEYSVVLNNMCNTRCSMIGRNANMTEL 1068 Query: 991 -RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSE 1022 + + + +V S ++ ++K G G+VT + Sbjct: 1069 AKADEVTFGGIVTSVNERFSQKTGKPFGFVTIED 1102 >gi|294790529|ref|ZP_06755687.1| DNA polymerase III, alpha subunit [Scardovia inopinata F0304] gi|294458426|gb|EFG26779.1| DNA polymerase III, alpha subunit [Scardovia inopinata F0304] Length = 1187 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 357/1082 (32%), Positives = 567/1082 (52%), Gaps = 72/1082 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL H+ YS L+GA+ + ++ + Q A+ ITD N+ A E + A Sbjct: 1 MTSSSDFVHLHNHTDYSTLDGAVPVKKLVQVVKDQGQKAVGITDHGNMHGAYELWRTAVD 60 Query: 65 AGIQPIIGCQLDI--------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 GI+PIIG + I + + Q S + A+ Q L+ L+ Sbjct: 61 QGIKPIIGIEAYITPGTARGDKTRVHWGTKEQHADDVSANGSYTHMTLWAQNDQGLVNLL 120 Query: 117 SRMY------LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L+ + + R L+ + G+I TG SG + + A + Sbjct: 121 KASSVANLEGLMGRNPRMDRDVLNTYHQ----GIIATTGCPSGAVQTRLRLGQYEQALRE 176 Query: 171 LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 + ++G + YV + H ++ + ++++A PLVATN+S + EED +A Sbjct: 177 ARELQDIYGKENFYVEIMDHGLTIEKRVINDLIRIADNIGAPLVATNDSHYGLEEDAKAQ 236 Query: 229 DVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 D L+ + + ++ +R +Y+K+ +M +F D P+A +NT+EIA RC+ + Sbjct: 237 DALLCINSGSRLTDPNRFHFDGSGYYIKSAQQMRELFKDFPQACDNTLEIAERCNVMFDD 296 Query: 288 H--APILPRFIEKECDDIQKEEENELRNKAVA-GLEVRLAQGAIAKGYHAQDYRQRLDFE 344 H +P F D Q + L V GLE R G A+ ++ D+E Sbjct: 297 HEDGAFMPEF-----DCPQGWDATSLFLHDVEQGLERRYPDGVPAQ------VARQADYE 345 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 VI +M+F GYFL+VAD+I WAK + + VGPGRGS AGS+ +YA+ IT++DPL+ L+F Sbjct: 346 CGVICQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGSMVSYAMGITELDPLKHGLIF 405 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+S+PD D+DF R++V++YV +KYG ++VAQ +T+G+++ K AL+D R Sbjct: 406 ERFLNPERVSLPDIDVDFDPAGREKVLQYVTHKYGADKVAQCVTYGTIKTKQALKDSARI 465 Query: 465 LQMPYSQVDRLCKLIPND-PAHPVSLQAI--------ADDSRFREARLADPSVDRLLEIS 515 L + + + K +P +SL I A+ FR+ +P V ++ E + Sbjct: 466 LDYEFQMGETITKALPGSVGGKDISLHDIFDPHAKRYAEAQEFRDLYNDNPDVQKITEEA 525 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFL 574 + +EGL R HA ++ +P++ P+ + R+D + T F E GL+K DFL Sbjct: 526 KGIEGLIRQTGVHACATIMASQPIANTSPLLK--RTDGTITTTFEYHTCETLGLVKMDFL 583 Query: 575 GLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL LT+++++L+ + G VDL IP DD TY LL++ TLG+FQL+S GM+ L+ Sbjct: 584 GLANLTVIKETLNNIKANGKPAVDLEKIPIDDKPTYDLLSSGHTLGVFQLDSDGMQSLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNN---RKNGKEKIVSIHPLID----PMLKETQ 686 ++PD DI AL++LYRPGP+D + +NN RKNG ++I IHP ++ +L ET Sbjct: 644 QLKPDNFNDISALIALYRPGPMD-VDSHNNYAKRKNGLQEIKPIHPELEKPLASVLDETY 702 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQV A++L+GYSL ADVLRRAMGKK E + K+K F G ++G S+ A Sbjct: 703 GLIVYQEQVQSAARILAGYSLGRADVLRRAMGKKKPEVLAKEKVPFFEGMKEHGYSQEAA 762 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 ++++L FA Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + E N +K + Sbjct: 763 QAVWDVLVPFAGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGERTNKDKTALYL 822 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM---EASADK-PF 862 + R+ NIQ++PP VN + N I + L A++ VG I+ E S K F Sbjct: 823 GECRRMNIQVLPPDVNESVSHYSAVGNDIRFGLGAVRNVGDKIVDAIVHEREKSGGKGKF 882 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 S D+ +R+ LN+R +ESL+ GA D +R L + +++ Sbjct: 883 LSFLDWINRMPVSVLNKRTVESLIKGGAFDSIDPNRRALFTIHEAAIDQVVPLKRKEAEG 942 Query: 923 HENIFAHEKGTFSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 ++FA S I++ + + + E+ +LG Y S HPL + Sbjct: 943 QFDLFADAGDPSSSSADALGDANISVPQIDEWDKKTKLNFEREMLGLYVSDHPLSGLASV 1002 Query: 975 LRK---MGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 L M I +T+ N + +AA++ + ++ +++G VT + + Sbjct: 1003 LANLSDMSIPQLLNKASTMPDRNQVTIAALITAVDRRVSKQGKPWAIVTLEDLEGSIQCL 1062 Query: 1031 FF 1032 FF Sbjct: 1063 FF 1064 >gi|99034688|ref|ZP_01314628.1| hypothetical protein Wendoof_01000559 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 718 Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust. Identities = 296/607 (48%), Positives = 406/607 (66%), Gaps = 15/607 (2%) Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI YVQ KYG+ VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +P Sbjct: 1 RDLVIDYVQKKYGY--VAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNP 58 Query: 487 VSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+L QAI D ++ R +D + +LL+IS +LEG+YRH STHAAGIVI D+ L VP+ Sbjct: 59 VTLSQAIEFDQNLQKERDSDEVIAKLLDISLRLEGIYRHVSTHAAGIVICDQKLENFVPV 118 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 Y D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + + G K+D+S +P +D Sbjct: 119 YYDPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLND 178 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY +L++ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y RK Sbjct: 179 QKTYEILSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARK 238 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEM Sbjct: 239 HGLEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEM 298 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +KQ+E FI GA+KNG+ A IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+ Sbjct: 299 NKQRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPL 358 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF A M L +D+ +K+ F A+ + ++ P +N +F + D RI Y +AA++ V Sbjct: 359 EFFTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNV 418 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G + A I+ + D E F +N+R LESL+ +GA D +R QL +S+ Sbjct: 419 GFSIAEGIVNVRSSACKDIWE-FIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESM 476 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D + +A +++R + +F +E F E + E+E LGFY + Sbjct: 477 DTLIYFANKNKQDRESSQAALFGSLDVLKPKLENVEDFDEEE---KLEHELFSLGFYLTN 533 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HPL+ ++ +L K+ I G+ I N A V+ + +T + R +T S+P Sbjct: 534 HPLEKFRTLLEKLNI-GF------IGENRTAKTAGVILNARMRTSERGRFVILTLSDPHN 586 Query: 1026 EYEANFF 1032 E F+ Sbjct: 587 ISEIAFY 593 >gi|332177029|gb|AEE12719.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica DSM 20707] Length = 1272 Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust. Identities = 341/1060 (32%), Positives = 542/1060 (51%), Gaps = 104/1060 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63 +V L VHS YS+L+G + ++DK A P IA+TD ++ F+ A Sbjct: 18 YVPLHVHSHYSILDGMAPVEKLVDKAVACGMPGIALTDHGAMYGIKNFTNYANDKINGDK 77 Query: 64 -----------------------------------AAGIQPIIGCQ-------LDIDMQD 81 + + I+GC+ L++ +D Sbjct: 78 LAQIKSLRKQIKELEAEASNADEIARIEGEIKTIEQSLFKAIVGCEVYVARRSLELKDKD 137 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVRICLSWLQEIG 140 N ++ + ++LL +GY+ LI++VS + + G+ RI L E Sbjct: 138 AKDPDNPTRSIDRSGYHLILLAKNLQGYRNLIKMVSIAW--EHGEYYKPRIDKKLLSE-H 194 Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH------RGYDR 194 EG+I + G I + A K L +K+ FG+ Y+ + H G + Sbjct: 195 HEGIIASSACLGGEIAQHILHGRLDEARKTALWYKETFGEDYYLEIMLHPNSDPLGGQET 254 Query: 195 YRES-----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 Y + +V+++ + ++ATN++ FL+EED EAHD L+ + ++ +S +R R T Sbjct: 255 YHKQLQVAQEVIKMGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPISDPNRMRYT 314 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 +LK+ EM ++F+D P+ LENT+EI + + HAP++P F E + E++ Sbjct: 315 KQEWLKSPEEMTALFADYPDVLENTLEICNKVEYYSIDHAPLMPHF---ELPEGFASEDD 371 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR+ G + R + ++R+D EL VI M F GYFL+V DFI A++ Sbjct: 372 YLRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVVQDFIAAARQ 425 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 + VGPGRGS AGS AY L+IT I+P+++ LLFERFLNPDR+SMPD DIDF R Sbjct: 426 LGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDDKNRWR 485 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 V+ +V NKYG + V+ IIT ++ K A++ V R ++P Q +RLCKLIP+ V Sbjct: 486 VLEWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRAPEGVKH 545 Query: 490 ----QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + ++ FREA ++ + + + +++LEG HA G++I P+S +VP Sbjct: 546 LTLDWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPVSDVVP 605 Query: 545 MYRDVRSDLP----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 + + D V Q+ K IE GLIK DFLGL+TL+++ +L + G+ +D+ Sbjct: 606 LSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALQNIKMSYGIDLDID 665 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ L + T+G FQ ES GMR+ L+ ++P +D++A+ +LYRPGP+DNI Sbjct: 666 TIPVDDPKTFELYSRGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGPMDNIP 725 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK G+++I P ++P LK+T G+ +YQEQVM ++++L ++ ++D LR+AMGK Sbjct: 726 TFIERKLGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDSDSLRKAMGK 785 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++EM K + +F+ G + I++ KFA Y FNKSH+ YA ++YQTA++ Sbjct: 786 KKEKEMAKYRIKFVENGVAKGHPRDTLERIYDGWQKFASYAFNKSHSVCYAWVAYQTAYL 845 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP +F+AA +T +K+ K+ ++ + +++ P VN F + I + Sbjct: 846 KAHYPAQFMAALLTCNQSKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSANKEGVIRFG 905 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L I VG + A I+ E + + DF R D +RR LE+L+ +GA D FG Sbjct: 906 LGGISHVGLSVAEAIIQEREEHGAYQDVYDFFQRTDLSNCSRRALEALILSGAFDNFGIE 965 Query: 898 RMQLLQS-----------------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 R L + +Y + +E RT ++F + L Sbjct: 966 REVYFAPIAKSGVSSLSYGKDETFLTALMQYGKILESERTQVQASLFGDSDPSVKLPKPL 1025 Query: 941 EKFSVENSS--VRFENEQRVLGFYFSGHPLDVYKPILRKM 978 VE S R EQ +G Y S HPLD Y I+ + Sbjct: 1026 PPKDVEPWSHLERLTKEQTYIGMYLSAHPLDPYAFIIEYL 1065 >gi|256370678|ref|YP_003108503.1| putative bifunctional DNA polymerase III subunit alpha/DNA polymerase III subunit epsilon [Candidatus Sulcia muelleri SMDSEM] gi|256009470|gb|ACU52830.1| putative bifunctional DNA polymerase III, alpha subunit (DnaE)/DNA polymerase III, epsilon subunit (DnaQ) [Candidatus Sulcia muelleri SMDSEM] Length = 1406 Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust. Identities = 338/1016 (33%), Positives = 552/1016 (54%), Gaps = 67/1016 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 L K F H+ H+ +S+L + +N+++ K + A+ ITD N+ K Sbjct: 222 LFKKKYFSHIHNHTYFSILSSTIDINSLIKKTIEYEMDAVGITDYGNMMGVFNLINKIKT 281 Query: 65 AG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 I+PIIGC+L I DN + K + VL+ GY L +L S+ Sbjct: 282 INESEKKKIKPIIGCELFI--SDNYLIKKFTKKNPDKIYHQVLVAKNKNGYDNLSKLCSK 339 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 ++ RI + L E E LI ++G + I + AEK + LF Sbjct: 340 GFIDGYYSGIPRIGKN-LVEKYKENLIAISGDLNSEIPLTLLNKGEKEAEKVFKWWHNLF 398 Query: 179 GDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH- 236 D Y+ + RH + +++ ++ A +++ +A NN+ +L ++D AHD+L+ V + Sbjct: 399 KDDFYIEILRHGLEEEDHVNKILIKFAKKYKVKFIAQNNNFYLEKKDANAHDILLCVKNC 458 Query: 237 ---STVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 S + + R + Y K + +M ++FSD+PEA +N E+ + + ++ P Sbjct: 459 QKQSIPIGKGKGFRFGFPNKEFYFKKKLQMYNLFSDIPEAFDNLKELIEKVE-VYEISNP 517 Query: 291 IL-PRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLD 342 IL P+F +K+C ENE L+ +GA K H + +++++ Sbjct: 518 ILLPKFEIPKKWRKKDCKSNDIHYENEY-------LKYLTYKGAKKKFDHLNEQIKKKIE 570 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 FEL I ++ + GYFLIV D I AKK + VGPGRGS AGSV AY + IT IDP++++L Sbjct: 571 FELETIKKIGYPGYFLIVQDLILQAKKIGVEVGPGRGSVAGSVVAYCIGITKIDPIKYNL 630 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNPDR+S+PD DIDF R+++I++V NKYG + VAQIIT+G + AK+++RD Sbjct: 631 LFERFLNPDRVSLPDIDIDFDDKGREKIIQWVVNKYGKDNVAQIITYGKMGAKSSIRDTA 690 Query: 463 RALQMPYSQVDRLCKLIP-NDPAHPVSLQAIADDSR----------------FREARLAD 505 R L + + D++ K++P N + + I D + F+E Sbjct: 691 RVLNLSLEETDKMAKMVPTNFSLKEIITKDIKDLKKILKFEELKNVITLKKIFKEKNTLQ 750 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 + L+ + +EG R+ HA GI+I + + +P+ + S+L +TQF+ + +EK Sbjct: 751 A---KTLKQAMGIEGSVRNTGIHACGIIITPSDIKKYIPVAKTKDSNLLLTQFDNEVVEK 807 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GL+K D LGLKTLT+++++L + R +K L IP DD +TY L T+ +FQ ES Sbjct: 808 MGLLKMDLLGLKTLTIMKETLFLIKNRNIK--LENIPLDDEKTYELFKNGETVAVFQYES 865 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 GM++ L+ ++PD +D+IA+ +LYRPGP+ I + RK+G+EKI P + LKET Sbjct: 866 HGMQKYLKQLKPDKFDDLIAMNALYRPGPMQYIPNFIARKHGQEKISYDLPELKEFLKET 925 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+ +YQEQVM I+Q +SG+S +AD+LR+A+GKK K + K++FI G KNG S I Sbjct: 926 YGITVYQEQVMLISQKISGFSKGDADLLRKAIGKKEKNLLSNMKKQFIDGGKKNGFSSQI 985 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 I++ FA Y FNKSH+ Y+ I+++TA++KTHYP E++A+ ++ M N++ I F Sbjct: 986 LEKIWKDWKSFASYAFNKSHSTCYSYIAFKTAYLKTHYPAEYMASVLSNNMKNIKDISFF 1045 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNR---IYYSLAAIKGVGTTTARHIMEASADKPF 862 ++ ++ + ++ P +N D+K N+ I + + AIKG+G + + I++ K + Sbjct: 1046 IEECKRIGVIVLGPDINES--DYKFTVNKLGFIRFGIGAIKGIGEYSVKSILKERK-KKY 1102 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL------QSLDNIQKYAQWVE 916 +S+ +VD + +N++VLE+LV +GA D F R Q ++ I K+ + Sbjct: 1103 NSILGLIKKVDLRLVNKKVLENLVVSGAFDNFKIQRSQYFYEENGSNMIEKIIKFGVKYK 1162 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 K + N ++F + K K + N + + E+ V+G Y + HPL+ YK Sbjct: 1163 KIKENIKNSLFKNIKDIEILKPNFKSCKNWNLFEKLKKEKEVIGMYLTYHPLNEYK 1218 >gi|260592651|ref|ZP_05858109.1| DNA polymerase III, alpha subunit [Prevotella veroralis F0319] gi|260535421|gb|EEX18038.1| DNA polymerase III, alpha subunit [Prevotella veroralis F0319] Length = 1239 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 366/1106 (33%), Positives = 564/1106 (50%), Gaps = 101/1106 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------Q 60 ++HL VH++YS+L+G + ++DK AD +AITD +F EFS + Sbjct: 4 YIHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFSDYCAKVNKERK 63 Query: 61 KACAAGIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 K +PI GC++ + M D K + + +++L GY+ LI+LVS Sbjct: 64 KNGEEPFKPIFGCEMYVARRTMHDKDKSMHDN-----SGYHLIVLAKNYNGYKNLIKLVS 118 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 ++ D R + L++ E LI+ + +G I A + + ++ Sbjct: 119 HAWV-DGYYYRPRTDRAELEKY-HEDLIVCSACIAGEIPSKIIHGDIDGAREACEWYHRV 176 Query: 178 FGDRLYVNLQRHRGYD----RYRES---------QVVQLAYTHELPLVATNNSLFLSEED 224 FGD Y+ LQRH D RE+ ++Q A + + +V TN+ F +E Sbjct: 177 FGDDFYLELQRHEVKDPTILANREAFPLQQKANKVLLQFAKEYGIKVVCTNDCHFEDKET 236 Query: 225 YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284 EAHD L+ +A + + R R + + K+R EM +FSD+PEAL NT+E+ + Sbjct: 237 AEAHDHLLCLATNEDLDDPKRMRYSKQEWFKSRQEMNDVFSDIPEALTNTLEVLDKVEIY 296 Query: 285 LQVHAPILPRF-------IEKECD------DIQKE-------------EENELRNKAVAG 318 H PI+P F E+E + D+ KE EE + + + G Sbjct: 297 SIDHGPIMPFFPIPESFGTEEEWEKKFTEEDLYKEFTTDENGENPLSPEEGQKVIERLGG 356 Query: 319 LE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E +LA K Y + + + + FEL+V+ M F GYFLIV DF Sbjct: 357 YEKIYRIKFEADYLAKLAYDGAKKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLIVQDF 416 Query: 364 IQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 I A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF Sbjct: 417 INAARQELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDF 476 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 D R V+++V +KYGHE A IIT+G++ K +++DV R ++P + + LCK IP+ Sbjct: 477 DDDGRGRVLQWVMDKYGHENCAHIITYGTMATKNSIKDVARVEKLPIAIANELCKAIPDR 536 Query: 483 PAHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRP 538 + + AI + ++A +++ +R ++ ++ LEG R+ HA G +I P Sbjct: 537 LPDGMKMNLANAIKCTPQLQDAEVSEDIRERNTIKYARMLEGTVRNTGIHACGFIICRNP 596 Query: 539 LSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592 + VP+ D +PVTQ++ IE GLIK DFLGLKTL+ L+++ + Q Sbjct: 597 IDDWVPVSTATDPDFPEKKVPVTQYDGHVIEATGLIKMDFLGLKTLSELKEACKVIRQTT 656 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 G +DL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ +LYRP Sbjct: 657 GDIIDLDNIPIDDELTYQLYQKGQTIGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRP 716 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D Sbjct: 717 GPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRGESDA 776 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LR+AMGKK K +D+ K +FI NG I I+ KFA Y FNKSHA Y+ + Sbjct: 777 LRKAMGKKKKAIVDQMKPKFIKQGQANGHDPQILEKIWSDWEKFASYAFNKSHATCYSWV 836 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831 +YQTA++K HYP E++AA MT + +I K ++ + I + P +N + F V Sbjct: 837 AYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIATLGPDINESQIGFGVNK 896 Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I + LAAIKG+GT+ A I+ E + P+ + DF RVD +NR+ ESL ++G Sbjct: 897 KGEIRFGLAAIKGMGTSAAESIVSEREKNGPYKDIYDFAERVDLSNVNRKAFESLAYSGG 956 Query: 891 LDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 D FG R Q LD I +Y Q + + + ++F K Sbjct: 957 FDSFGLQREQFFGVSGRDSVFLDIIVRYGQLFQTEKAEQQNSLFGGMDAVAVMHPVAPKT 1016 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-----GIKGYEESVATI-RGNNIRL 997 + + E+ ++G Y S HPLD Y +L M + G + + + + + Sbjct: 1017 EKWPTIEKLNKERELVGVYLSAHPLDEYSVVLNNMCNTHCSMIGRNADMTKLSQTDEVTF 1076 Query: 998 AAMVVSKQQKKTRK-GSRIGWVTFSE 1022 +V S ++ ++K G G+VT + Sbjct: 1077 GGIVTSVNERFSQKTGKPFGFVTIED 1102 >gi|156740220|ref|YP_001430349.1| DNA polymerase III subunit alpha [Roseiflexus castenholzii DSM 13941] gi|156231548|gb|ABU56331.1| DNA polymerase III, alpha subunit [Roseiflexus castenholzii DSM 13941] Length = 1272 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 341/984 (34%), Positives = 537/984 (54%), Gaps = 42/984 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G + I + +IA+TD ++ A+EF A AGI+PI Sbjct: 4 FVHLHVHSEYSLLDGYAATGAIAARAVELGMDSIALTDHGVMYGAMEFYTNAKKAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK---Q 127 IG + + + T++G + ++LL GY+ L+ L +R +L GK Sbjct: 64 IGLEAYMAPGSRREATSRGAKHYY---HLLLLAKDEIGYRNLVRLTTRAHLDGMGKGVFA 120 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 RI + L++ EGLI+ + +G + + + A + ++ L G D ++ L Sbjct: 121 RPRIDRALLEQ-HHEGLIVTSACIAGEVIQRLKEEQKEQAREIAAYYRDLLGPDNYFLEL 179 Query: 187 QRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 Q H ++V++ +PLV TN++ F+ ED +AH +++A+ ++ + + Sbjct: 180 QLHDNTPELEAINDELVRIGKELGIPLVVTNDTHFVRPEDVDAHKMILALGYNMTLKELC 239 Query: 245 RPRVTPD--HYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECD 301 + D +++ + EM F LENT IA RC+ L+ LP E Sbjct: 240 AKQYEMDATYHIMSGEEMWRRFKKYGTTPLENTRRIAERCNLNLEFGRVQLPTIDIPEGH 299 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D + LR GL R G + Y +RL++EL+VI + F Y LIV Sbjct: 300 DAS----SYLRFVCEEGLMRRF------NGNPPEAYMKRLEYELDVINQTGFPDYMLIVW 349 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D++++A+ IP P RGS S+ Y L ITD+DP++ LLFERFL+P+R+ MPD DID Sbjct: 350 DYVKFARARGIPCLP-RGSAGASLILYCLGITDVDPVKNKLLFERFLSPERLEMPDIDID 408 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F RR EV+ Y+ +YG E AQIIT+G+L AKAA+RD+GR L +P S+VDR+ +LIP Sbjct: 409 FADSRRHEVLEYIAERYGRENTAQIITYGTLGAKAAIRDIGRVLDIPLSEVDRVARLIPA 468 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P QA+ ++ +P + L++ +QK+EG + THA G+V+ PL + Sbjct: 469 LPVGTTIAQALERVPELKQIYETNPELANLIDWAQKVEGRMKSVGTHACGVVVSRTPLEE 528 Query: 542 LVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 +VP+ R + + + F ++K GL+K D LGL L+++ ++L ++AQ G ++L+ Sbjct: 529 IVPLQRTTKDENALMAAFEGPTLQKMGLLKMDVLGLTNLSVVAEALQYIAQTTGKTMELA 588 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD + + L T +FQLES GM + L ++P +ED+ A+V+LYRPGP++ I Sbjct: 589 DIPLDDPKVFEALGRGETTNVFQLESPGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQIP 648 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 VY + KN + I +HP++ P+L++T GVI+YQEQ+M++ Q ++ Y+L +A ++ +A+ K Sbjct: 649 VYIHNKNHPQDITYLHPILKPILEDTYGVIVYQEQIMRLLQEVADYTLGQAYIVIKAISK 708 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ M + + +F G + G+++ A ++EL+ FA Y FN+ H+ Y ++SYQTAW+ Sbjct: 709 KDKKLMAENEVKFKQGCLRKGLTQEQADQLWELILPFAGYSFNRPHSTLYGLLSYQTAWL 768 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----- 834 K +YPVE++AA + + I K + RQ + ++ P++N DF + + R Sbjct: 769 KVNYPVEYMAAVLKGAGGATDDIAKAVNECRQRGVPVLGPNINDSAFDFTIREFRDPSDG 828 Query: 835 -----IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I + LAAIK VG I+ E A PF SLED C RVD LN+RVLESL+ Sbjct: 829 NLKRGILFGLAAIKNVGAGPIEAILRERDAGGPFRSLEDVCERVDRHALNKRVLESLIKC 888 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--E 946 GALD +R Q L+ LD + +KNR ++F ++ I V E Sbjct: 889 GALDALPGNRWQKLEILDAAMEAGARAQKNRETGQIDMFGGLVSQAAEVIAALPLPVIEE 948 Query: 947 NSSVRFEN---EQRVLGFYFSGHP 967 + R E E+ +LG FS P Sbjct: 949 TAERRKEKLAWEKELLGVVFSSDP 972 >gi|229490423|ref|ZP_04384264.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis SK121] gi|229322713|gb|EEN88493.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis SK121] Length = 1178 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 365/1077 (33%), Positives = 576/1077 (53%), Gaps = 77/1077 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + + ++ A + A+ +TD N++ A +F +A +AGI+P Sbjct: 4 SFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAGIKP 63 Query: 70 IIGCQLDIDMQD--NLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + I + N K G + + ++ A G + L +L S Sbjct: 64 IIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + Q + R+ L EG+I TG SG I + A + +++++G Sbjct: 124 SIEGQLGKWPRMDEE-LIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWG 182 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H +R ++ + +P +ATN+ +++++ E H+ L+ + Sbjct: 183 PDNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQTG 242 Query: 238 TVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHA--PILP 293 +S R + D +YLK+ +EM +I+ +++P A +NTV I R V A +P Sbjct: 243 KTLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDRMP 302 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F E ++ LR + + GL+ R G Q+Y R D+E+ VI M F Sbjct: 303 IFPVPE----GHTQQTFLRAEVMRGLDRRFPSGP------PQEYLARADYEIGVINEMGF 352 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFL+V D I AK I VGPGRGS AGS+ AYA+ IT+IDP+ + LLFERFLNP+R+ Sbjct: 353 PAYFLVVGDLINHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPERV 412 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA-LQMP-YSQ 471 SMPD DIDF RR E++RY +K+G+++VAQ+ITFG+++ KAA++D R P ++ Sbjct: 413 SMPDIDIDFDDRRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGFAI 472 Query: 472 VDRLCKLIPND-PAHPVSLQAIAD--DSRFREA----RLAD--PSVDRLLEISQKLEGLY 522 D++ K +P A +S+ I D R++EA L D P V ++ + + LEGL Sbjct: 473 ADQITKALPPPIMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEGLI 532 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 533 RNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVI 592 Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +L+ + A RG+ +DL +P DD TY LL TLG+FQL+ GMR+ L+ MQP Sbjct: 593 GDTLENIKANRGIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTGFG 652 Query: 642 DIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695 DI+A ++LYRPGP +D + Y RKN E + IHP L +P+ L ET G+IIYQEQ+ Sbjct: 653 DIVAALALYRPGPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQEQI 712 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQ+AQ ++GY+L +AD+LRRAMGKK E++K F G N S+ +++ + Sbjct: 713 MQLAQKVAGYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTVLP 772 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSH+A Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 773 FAGYAFNKSHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLGIT 832 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874 ++PP VN VDF + I + + +++ VG I++A +K F D+ ++D+ Sbjct: 833 VLPPDVNESRVDFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKIDA 892 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENI--FA 928 N++V ESL+ AGA D G+ R L+ ++D++ T K E I F Sbjct: 893 MACNKKVTESLIKAGAFDSLGHPRKGLMLVHADAIDSVMS---------TKKAEAIGQFD 943 Query: 929 HEKGTFSDKITLEKFSVE------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 G +D+ F V+ +S R E+ +LG Y SGHPL+ + ILR+ Sbjct: 944 LFGGAEADESITSVFDVKIPDEEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQS--- 1000 Query: 983 YEESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + S+A I G + L ++ S ++ + G V + E FFP Sbjct: 1001 -DTSIAAILEGGVQDGAQVTLGGIIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFP 1056 >gi|183602396|ref|ZP_02963762.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis HN019] gi|219683289|ref|YP_002469672.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis AD011] gi|241191250|ref|YP_002968644.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196656|ref|YP_002970211.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218315|gb|EDT88960.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis HN019] gi|219620939|gb|ACL29096.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis AD011] gi|240249642|gb|ACS46582.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251210|gb|ACS48149.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177365|gb|ADC84611.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis BB-12] gi|295794243|gb|ADG33778.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis V9] Length = 1188 Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust. Identities = 353/1067 (33%), Positives = 559/1067 (52%), Gaps = 62/1067 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FV L H+ YSLL+GA + +++ A+ ITD N+ A E +A Sbjct: 1 MTNSADFVQLHNHTHYSLLDGASKIPDLVKYTKELGMGAVGITDHGNMHGAYEMYTEAVK 60 Query: 65 AGIQPIIGCQL----DIDMQDNLKM-------TNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 ++PIIG + + QD ++ + + + L EG + LI Sbjct: 61 QDVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTLWAEDDEGLRNLI 120 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 S L + + R+ L ++G+I +G SG + A + Sbjct: 121 RASSVANLEGRVMRYPRMDKEVLSTY-SKGVICGSGCPSGIVQTRLRLGQFDEALRAAGE 179 Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + ++G D ++ L H +R ++++A PL+ATN+S ++ EED A D + Sbjct: 180 LQDIYGKDNFFIELMDHNLEIERKVTKDLLEIAKKLGAPLLATNDSHYVHEEDAGAQDAM 239 Query: 232 MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH-- 288 + + + + DR + + +Y+++ +M +F DLPEA +NT+E+A RC+ + H Sbjct: 240 LCINSGSHLDDPDRFKFDGEGYYMRSAQQMRELFRDLPEACDNTIEVAERCNVMFDDHED 299 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 +P+F E D E + K GLE R +G + AQ D+E VI Sbjct: 300 GAFMPKFPCPEGWD----ETSLFLKKVEEGLERRY-EGNVPAHVLAQ-----ADYECGVI 349 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M+F GYFL+VAD+IQWAK + I VGPGRGS AGS+ AYA+ IT++DPL L+FERFL Sbjct: 350 CQMQFPGYFLVVADYIQWAKDHGIMVGPGRGSAAGSMVAYAMGITELDPLEHGLIFERFL 409 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+S+PD D+DF + R +VI Y +KYGH++VAQ + +G+++ K AL+D R + Sbjct: 410 NPERVSLPDIDVDFDPEGRLKVIEYCGDKYGHDKVAQCVIYGTIKTKQALKDSARIMGYE 469 Query: 469 YSQVDRLCKLIP-------NDPAHPV---SLQAIADDSRFREARLADPSVDRLLEISQKL 518 +S + + K +P + P H + + A+ +RE ++P R+ + + + Sbjct: 470 FSMGELVTKALPPAATGGKDVPLHDIFDPGAKRYAEAREYRELYESNPDAKRITDEAMGI 529 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLK 577 EGL R HA ++G P++ P+ R+D V T F E GL+K DFLGL Sbjct: 530 EGLIRQTGVHACATIMGSEPITDTSPLLE--RTDGTVTTTFEYHTCETLGLVKMDFLGLS 587 Query: 578 TLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ +L + G + +D + IP DD ETY LL+ TLG+FQL+S GMR L+ ++ Sbjct: 588 NLTVIGDTLRNIEANGKEPIDHTKIPLDDKETYELLSRGDTLGVFQLDSDGMRALLKQLK 647 Query: 637 PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVII 690 PD DI AL++LYRPGP +D+ Y RKNG +KI IHP L +P+ L ET G+II Sbjct: 648 PDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKIEPIHPELAEPLKEVLDETYGLII 707 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQV A++L+GYSL +ADVLRRAMGKK E + K++ F G ++G S+ A ++ Sbjct: 708 YQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKEHGYSREAAQAVW 767 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L F+ Y FNK+H+AAY +ISY TA++KTHYP EF+AA + N +K + +AR Sbjct: 768 DVLVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPAEFMAALLQGASTNKDKTALYLGEAR 827 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM--EASADKPFDSLEDF 868 + I+++ P VN + + + + L AI+ VG I+ + + + DF Sbjct: 828 RMGIKVLSPDVNESVYAYSAVGDVVRFGLGAIRNVGEKAVADIIAERQGSHGRYVNFMDF 887 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 RV LNRR++ESL+ AGA D +R L Q + +++ + ++FA Sbjct: 888 IRRVPLTALNRRLVESLIKAGAFDSIDPNRRALYQIHEAAIDSVTDLKRKQATGQFDLFA 947 Query: 929 HEKGTFSD---------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LR 976 D I++ + + E+ +LG Y S HPL + + LR Sbjct: 948 DLDAGADDGEAEALGDVSISVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLASLR 1007 Query: 977 KMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 M I + T+ + + +A ++ + + ++KG+R VT + Sbjct: 1008 DMSIAQLIDRAPTMPERSQVMVAGLITNVDSRVSKKGNRWAIVTIED 1054 >gi|261879187|ref|ZP_06005614.1| DNA-directed DNA polymerase III alpha subunit [Prevotella bergensis DSM 17361] gi|270334182|gb|EFA44968.1| DNA-directed DNA polymerase III alpha subunit [Prevotella bergensis DSM 17361] Length = 1239 Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust. Identities = 369/1104 (33%), Positives = 572/1104 (51%), Gaps = 97/1104 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------SQKAC 63 FVHL VH+ YS+L+G + ++DK +D +AITD ++ E ++K Sbjct: 4 FVHLHVHTHYSVLDGQSKVRKLVDKAISDGMKGMAITDHGVMYGIKELFDYCATINKKRA 63 Query: 64 AAGI---QPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 + G+ +PI+GC++ + + K+ G + +++L +GY+ LI+LVSR Sbjct: 64 SEGLDPFKPILGCEMYVAHHNKEDKVREDGDA---SGYHLIVLAKNYKGYKNLIKLVSRA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 ++ + R + L++ EGLI+ + +G + + A + + +LFG Sbjct: 121 WVHGYYYKP-RTDRTDLEKY-HEGLIICSACIAGEVPSKILKGDIEGAREACEWYHRLFG 178 Query: 180 DRLYVNLQRHRGYD------------RYRESQVV-QLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + + +QV+ + A + + +V TN+ F ++ E Sbjct: 179 DDFYLELQRHEVKDPSIRANREVFPLQQKANQVMMEFAKEYGIKVVCTNDCHFEDQDTAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ S + R T + K+R EM IFSD+PEAL NTVEI + Sbjct: 239 AHDHLLCLSTSKDLDDPFRLMYTKQEWFKSREEMNEIFSDIPEALRNTVEILDKVELYSI 298 Query: 287 VHAPILPRF-IEKEC--------------------------DDIQKEEENEL-------- 311 +PI+P F I KE + + +EE +++ Sbjct: 299 NSSPIMPYFPIPKEFGTEEELRKKYTEEDLFREFTTDENGQNPLPEEEAHKVIDRLGGYD 358 Query: 312 ---RNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R K A +LA K Y + R+ ++FEL+V+ M F GYFLIV DFI Sbjct: 359 KIYRIKLEADYLGKLAFDGAKKNYGDPVPDNVREHINFELHVMKTMGFPGYFLIVQDFIA 418 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A+ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF Sbjct: 419 AARNELGVWVGPGRGSAAGSVVAYCLGITRIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--- 481 D R +V+R+V +KYG E A IIT+ S+ K ++ DV R ++P + + L K IP+ Sbjct: 479 DGRGKVLRWVMDKYGEENCAHIITYSSMATKNSIADVARVERLPLERANMLKKAIPDRLP 538 Query: 482 DPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 D AI REA + DP ++ +++LEG R HA G +I P+ Sbjct: 539 DGKKMNLRNAIEYTPELREAEASTDPRERNTIKYAKQLEGTVRGTGIHACGFIICRDPID 598 Query: 541 QLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594 + VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + + RGV Sbjct: 599 EWVPVSTADDPDFPELKCAVTQYDGHVIEDTGLIKMDFLGLKTLSELKEACKVVERTRGV 658 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 KVD+ IP DD TY L T+G FQ ES GM++ L + P ED+IA+ +LYRPGP Sbjct: 659 KVDIDKIPIDDELTYKLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNALYRPGP 718 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D LR Sbjct: 719 MDYIPDFIKRKNDPSLVTYDIPCMEQYLKDTYGITVYQEQVMLLSRQLANFTRGESDALR 778 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK K +D+ K +F+ NG K + I+ KFA Y FNKSHA Y+ ++Y Sbjct: 779 KAMGKKKKAIVDQMKPKFLKQGMANGHDKNVLEKIWNDWEKFASYAFNKSHATCYSWVAY 838 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QTA++K HYP E++AA MT ++ +I K ++ + +I + P VN V+F V Sbjct: 839 QTAYLKAHYPAEYMAALMTRRFADIGEITKLMEECKAMDIPTLGPDVNESYVEFGVNKKG 898 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + L+AIKG+G+ A I+ E + P+ + DF RV + +NR+ +ESL +G D Sbjct: 899 EIRFGLSAIKGMGSGAADAIVKERQKNGPYKDIYDFVGRVSLRDINRKAMESLALSGGFD 958 Query: 893 CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 CFG R Q +Q LD++ ++ Q ++++ ++F + + Sbjct: 959 CFGLMREQYMQVNAKGDVFLDSLVRFGQQYQQDKMESANSLFGGMVSEIAIATPPAPKAE 1018 Query: 946 ENSSV-RFENEQRVLGFYFSGHPLDVYKPILRKM-----GIKGYEESVATIR-GNNIRLA 998 E S++ + E+ ++G Y S HPLD Y +L + G E+ A + + Sbjct: 1019 EWSAIEKLGKEKELVGIYLSAHPLDDYILVLDNLCNTSCTEAGNRENYAELSMRQEVTFG 1078 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSE 1022 +V Q+ ++G G VT + Sbjct: 1079 GIVTKVTQRFNKRGEPFGIVTIED 1102 >gi|288940218|ref|YP_003442458.1| DNA polymerase III subunit alpha [Allochromatium vinosum DSM 180] gi|288895590|gb|ADC61426.1| DNA polymerase III, alpha subunit [Allochromatium vinosum DSM 180] Length = 2069 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 304/718 (42%), Positives = 437/718 (60%), Gaps = 21/718 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+FVHL +HS YSL++G + + ++ +AA PA+A+TD NLFS + F + A AG++ Sbjct: 3 PTFVHLHLHSEYSLVDGLVRIKPLVKTVAAAGMPAVAVTDQGNLFSLVRFYKAAVGAGVK 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L + ++ ++ +VLL GY+ L L+SR ++ Q Sbjct: 63 PIAGADLWVRNPEDANHPHR----------LVLLAQDEPGYRNLTRLISRGFVEGQHLGV 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 ++ W+ E +GLI L+GG G + A +AE+RL + +F DR Y+ L R Sbjct: 113 AQVERDWILE-AHQGLIALSGGPRGDVAEALLKGRDAIAEQRLDAWLSVFEDRYYLELMR 171 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + V LA +P+VATN+ FL+ D+EAH+ + + + RPR Sbjct: 172 TGRALEGELIESSVDLAIRRGVPVVATNDVRFLAAGDFEAHEARVCIHQGRTLDDPRRPR 231 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + YL+ +EM +F+DLPEALENTVEIA+RC+ L++ LP F E Sbjct: 232 DYSEEQYLRTPAEMAELFADLPEALENTVEIAKRCNLELKLGKNYLPVFPVPEGMTTDSF 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + R LE L + A + Y +RL+ EL VI +M F GYFLIVADFIQW Sbjct: 292 FAEQSRRGLEWRLERILDRDAPDYAERRRVYEERLETELAVIIQMGFPGYFLIVADFIQW 351 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N IPVGPGRGSGAGS+ AYAL ITD+DP+ LLFERFLNP+R+SMPDFDIDFC + Sbjct: 352 AKDNGIPVGPGRGSGAGSLVAYALKITDLDPIEHELLFERFLNPERVSMPDFDIDFCMEG 411 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI YV KYG E V+QIITFG++ AKA +RDVGR + PY VD++ K++P + Sbjct: 412 RDRVIDYVARKYGREAVSQIITFGTMAAKAVVRDVGRVMGHPYGFVDKIAKMVPFELGMT 471 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + A D V +L++++KLEGL R+A HA G+VI L+ P+Y Sbjct: 472 LE-KALKESEDLKRAYDQDEEVRAILDMARKLEGLTRNAGKHAGGVVIAPTVLTDFAPLY 530 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVK----VDLSLI 601 + VTQ++ +E+ GL+KFDFLGL+TLT++ +L + A R K +D+ I Sbjct: 531 CEPGGANLVTQYDKDDVEQVGLVKFDFLGLRTLTIIDWALKTINAGRAAKGEPPLDIERI 590 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660 D E + LL T +FQLES GM++ ++ +QPDC ++I ALV+L+RPGP+ + +V Sbjct: 591 DPRDQEAFDLLKRCETTAVFQLESRGMKELIKKLQPDCFDEITALVALFRPGPLQSGMVD 650 Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 + RK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+L+GYSL AD+LRR + Sbjct: 651 DFIERKHGRAEVAYPHPDLEPILKPTYGIILYQEQVMQIAQVLAGYSLGGADILRRCL 708 Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 147/286 (51%), Gaps = 16/286 (5%) Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 + SH+AAYA++SYQT W+K HYP F+AA ++ +MDN +K+ + R +++ PP++ Sbjct: 1626 HNSHSAAYALVSYQTLWLKAHYPAAFMAAVLSADMDNTDKVVTLIDECRTMKLRVDPPAI 1685 Query: 822 NTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNR 879 N F + D++ + Y L A+KGVG + ++EA A F L DFC R+D +++NR Sbjct: 1686 NRSDYHFTIADDKTVVYGLGAVKGVGESAIEAMLEARRAGGSFRDLWDFCGRIDLQRVNR 1745 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFS 935 RVLESL+ AGALD G +R L+ L K A+ R ++F T Sbjct: 1746 RVLESLIRAGALDELGPNRATLMAHLPLALKAAEQYHSTRAAGQVDLFGALEPSGPPTPD 1805 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 ++ E + R + E+ LG Y +GHP+D Y+ L+ MG + T R Sbjct: 1806 PQLARETLADWEDEQRLQGEKETLGLYLTGHPIDRYEDELKAMGGARIARLLETDRELGR 1865 Query: 996 R---------LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R + +VV + KT++G R+G V + EA F Sbjct: 1866 RDRRDREKRTVVGLVVGVRHGKTQRG-RMGSVVLDDRTGRIEATVF 1910 Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 30/47 (63%) Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 MGKK EEM KQ++ F GA GI ++ ++F L+ F+ YGFNK Sbjct: 1141 MGKKKPEEMAKQRDTFEQGALARGIDGQLSSHVFNLIEYFSGYGFNK 1187 >gi|226307018|ref|YP_002766978.1| DNA polymerase III alpha subunit [Rhodococcus erythropolis PR4] gi|226186135|dbj|BAH34239.1| DNA polymerase III alpha subunit [Rhodococcus erythropolis PR4] Length = 1202 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 365/1077 (33%), Positives = 576/1077 (53%), Gaps = 77/1077 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + + ++ A + A+ +TD N++ A +F +A +AGI+P Sbjct: 28 SFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAGIKP 87 Query: 70 IIGCQLDIDMQD--NLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + I + N K G + + ++ A G + L +L S Sbjct: 88 IIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 147 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + Q + R+ L EG+I TG SG I + A + +++++G Sbjct: 148 SIEGQLGKWPRMDEE-LIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWG 206 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H +R ++ + +P +ATN+ +++++ E H+ L+ + Sbjct: 207 PDNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQTG 266 Query: 238 TVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHA--PILP 293 +S R + D +YLK+ +EM +I+ +++P A +NTV I R V A +P Sbjct: 267 KTLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDRMP 326 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F E ++ LR + + GL+ R G Q+Y R D+E+ VI M F Sbjct: 327 IFPVPE----GHTQQTFLRAEVMRGLDRRFPSGP------PQEYLARADYEIGVINEMGF 376 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFL+V D I AK I VGPGRGS AGS+ AYA+ IT+IDP+ + LLFERFLNP+R+ Sbjct: 377 PAYFLVVGDLINHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPERV 436 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA-LQMP-YSQ 471 SMPD DIDF RR E++RY +K+G+++VAQ+ITFG+++ KAA++D R P ++ Sbjct: 437 SMPDIDIDFDDRRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGFAI 496 Query: 472 VDRLCKLIPND-PAHPVSLQAIAD--DSRFREA----RLAD--PSVDRLLEISQKLEGLY 522 D++ K +P A +S+ I D R++EA L D P V ++ + + LEGL Sbjct: 497 ADQITKALPPPIMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEGLI 556 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 557 RNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVI 616 Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +L+ + A RG+ +DL +P DD TY LL TLG+FQL+ GMR+ L+ MQP Sbjct: 617 GDTLENIKANRGIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTGFG 676 Query: 642 DIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695 DI+A ++LYRPGP +D + Y RKN E + IHP L +P+ L ET G+IIYQEQ+ Sbjct: 677 DIVAALALYRPGPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQEQI 736 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQ+AQ ++GY+L +AD+LRRAMGKK E++K F G N S+ +++ + Sbjct: 737 MQLAQKVAGYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTVLP 796 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSH+A Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 797 FAGYAFNKSHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLGIT 856 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874 ++PP VN VDF + I + + +++ VG I++A +K F D+ ++D+ Sbjct: 857 VLPPDVNESRVDFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKIDA 916 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENI--FA 928 N++V ESL+ AGA D G+ R L+ ++D++ T K E I F Sbjct: 917 MACNKKVTESLIKAGAFDSLGHPRKGLMLVHADAIDSVMS---------TKKAEAIGQFD 967 Query: 929 HEKGTFSDKITLEKFSVE------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 G +D+ F V+ +S R E+ +LG Y SGHPL+ + ILR+ Sbjct: 968 LFGGAEADESITSVFDVKIPEEEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQS--- 1024 Query: 983 YEESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + S+A I G + L ++ S ++ + G V + E FFP Sbjct: 1025 -DTSIAAILEGGVQDGAQVTLGGIIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFP 1080 >gi|291513949|emb|CBK63159.1| DNA polymerase III, alpha subunit [Alistipes shahii WAL 8301] Length = 1269 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 373/1134 (32%), Positives = 591/1134 (52%), Gaps = 133/1134 (11%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---------- 58 P FVHL VH+ YS+L+G S+ ++DK AD QP IA+TD ++F EF Sbjct: 2 PQFVHLHVHTQYSILDGQASVQRLVDKAMADGQPGIAVTDHGDMFGIKEFYNYVQKVKGK 61 Query: 59 -----------------SQKACA-------------------AGIQPIIGCQLDIDMQDN 82 + CA +PIIGC++ + + Sbjct: 62 CKDKAAEAEARIAALRDGTETCADPAAEIAKCERQLEECRRKLAFKPIIGCEVYVARR-- 119 Query: 83 LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142 ++ ++ P + ++LL +GY LI++VS+ + + R + +++ E Sbjct: 120 -RLHDKEGKPDQSGYHLILLAKNLKGYHNLIKIVSKAWT-EGFYMRPRTDRTEIEKY-HE 176 Query: 143 GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG------YDRYR 196 GLI + +G + RA N + AE+ + KK+FGD Y+ LQ H+ ++ Y Sbjct: 177 GLICCSACLAGEVPRAITANDLEKAEESIRWHKKVFGDDYYLELQLHKATVERANHEAYP 236 Query: 197 -----ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 + +LA H + +V TN+ F+ E++ EAHD L+ ++ + R + Sbjct: 237 MQLHVNKHLRELAAKHNVRMVCTNDVHFVDEDNAEAHDRLICLSTGKDLDDPKRMLYSKQ 296 Query: 252 HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILP----------------R 294 +LK +EM +IF PEA+ TV+I + HAPI+P R Sbjct: 297 EWLKTTAEMAAIFGQTDPEAMSTTVDICNQIECYSIDHAPIMPNFEIPEEFGTEAEYRAR 356 Query: 295 FIEKECDD----------IQKEEENELRNKAVAGLE----VRLAQGAIAK----GYH--- 333 EK+ D + EEE + + + G + ++ +AK G H Sbjct: 357 LTEKDLFDEFTRDENGNVVMSEEEGLKKIQKLGGYDKLYRIKFEADYLAKLTMDGAHRRY 416 Query: 334 ----AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAY 388 ++ +RL FEL+++ M F GYFLIV DFI+ A++ ++ VGPGRGS AGS AY Sbjct: 417 GEQLTEEQEERLKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSAVAY 476 Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448 L IT IDP+ + LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA IIT Sbjct: 477 CLGITQIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTQKYGKEKVAHIIT 536 Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQ-AIADDSRFREARLAD- 505 +G++ K A++DV R ++ S+ DRLCKL+P+ P ++LQ AI + A +D Sbjct: 537 YGTMATKLAIKDVARVQKLMLSESDRLCKLVPDKIPDKKLNLQNAIDYVPELKAAEQSDN 596 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMK 561 P + + ++ LEG R+ HA G +I ++ VP+ ++ + VTQ+ Sbjct: 597 PILRDTIRYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGS 656 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS-LIPFDDHETYHLLTTKGTLG 619 IE GLIK DFLGLKTL++++ +++ + +GVK+D+ +D TY L T+G Sbjct: 657 VIEDTGLIKMDFLGLKTLSIIKDAVENIRLTKGVKIDIDDFTIINDPATYRLYGEGRTVG 716 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679 FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + RK+G+ I P+++ Sbjct: 717 TFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIARKHGRSPIEYDIPVME 776 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+K+++D K +FI G KN Sbjct: 777 KYLKDTYGITVYQEQVMLLSRLLANFTRGESDTLRKAMGKKLKDKLDHLKPKFIEGGRKN 836 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA ++ + N+ Sbjct: 837 GHDPKVLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVLSRNLTNI 896 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFK---VGDNRIYYSLAAIKGVGTTTARHIM-E 855 E++ + + ++ I +M P +N F GD R + LAA+KGVG I+ E Sbjct: 897 EQLTLYMNECKRMGISVMGPDINESMRTFSSNAAGDVR--FGLAAVKGVGAAAVESIIAE 954 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG------YSRMQLLQS----- 904 A+ PF + DF RV+ +NR+ LE+L +AGA D Y + L S Sbjct: 955 RKANGPFKDIYDFVERVNYSLVNRKCLENLAYAGAFDSISDFARCKYFGVDLRDSSGITF 1014 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 ++ + +Y Q + + N +++F + + L + + + E+ ++G Y S Sbjct: 1015 IEQLMRYGQRFQTEQNNAQQSLFGGGEHVDIQRPVLPACADWSQLEKLTKEREMVGLYLS 1074 Query: 965 GHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 HPLD YK I+ M E++ ++G I +A MVV Q T+ G G Sbjct: 1075 AHPLDDYKIIIDHMCKTQLSELENLDALKGQEIAVAGMVVGVQNLMTKTGKPWG 1128 >gi|228475228|ref|ZP_04059954.1| DNA polymerase III subunit alpha [Staphylococcus hominis SK119] gi|228270839|gb|EEK12241.1| DNA polymerase III subunit alpha [Staphylococcus hominis SK119] Length = 1067 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 353/1036 (34%), Positives = 550/1036 (53%), Gaps = 101/1036 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +HS+Y LL +L +N+++ K A+ A+AITDTN L+ +F GI+PI Sbjct: 2 FVHLNIHSTYDLLYSSLKINDVVSKAKANGYQALAITDTNVLYGFPKFYDACVNEGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G MT T+ +I L EG L +L S + + KQ Sbjct: 62 FG------------MTVMVSDEISTIETI-LFAKNNEGLHALYQLSSAINM----KQKTT 104 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRH 189 I L WLQ+ A F + + + L+ T K + +++N Sbjct: 105 IPLKWLQKYSYH--------------LAIVFKDANASHQSLIQTLKN--NESVFIN---- 144 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKDR 245 QL ++ + +V NN+ +L+ ED + L A+ ++T V KD Sbjct: 145 ---------HTSQLDFSDD-KIVFLNNARYLNPEDADTILALKAIKNNTKLDLVNDIKDA 194 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 P SE + + + NT +A C+ +Q H +LP F + Sbjct: 195 HEYFP------TSENIKELQLSEKIIANTKALADECNAEIQYHQNLLPNF--------KT 240 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + ++ + L+ L + + K Q Y RL E ++I M F YFLIV+D I Sbjct: 241 PNQQSAKSYLLEKLKYNLKEFKLDKN---QRYIDRLHHEYSIITNMGFEDYFLIVSDLIH 297 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK +++ VGPGRGS AGS+ +Y L IT IDP++F LLFERFLNP+R++MPD DIDF Sbjct: 298 FAKTHDVMVGPGRGSSAGSLVSYLLGITTIDPIKFDLLFERFLNPERVTMPDIDIDFEDT 357 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR++VI+YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ Sbjct: 358 RREKVIQYVQEKYGQYHVSGIVTFGHLLARAVARDVGRIIGFDEKTLNEISNLIPHQLG- 416 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ + +F+ ++ EIS+KLEGL RH STHAAGI+I D+PL P+ Sbjct: 417 -ITLEEAYQNEKFKAFVHKSYRHEKWFEISKKLEGLPRHTSTHAAGIIINDKPLYHFAPL 475 Query: 546 YRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603 D + TQ+ M E+ GL+K DFLGL+ L+++ + + + + + +D+ +PF Sbjct: 476 ---TMGDTGILTQWTMTEAERLGLLKIDFLGLRNLSIIHQIITQVKKDLNIDIDIERLPF 532 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D + + LL+ T GIFQLES G+R+ L +QP+ EDI+A+ SLYRPGP+ I Y + Sbjct: 533 NDQKVFKLLSLGNTTGIFQLESEGVRKVLMELQPEHFEDIVAVTSLYRPGPMQEIPTYIS 592 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R++ + I +HP ++P+LK+T GVIIYQEQ+MQIA + +S +AD+LRRAM KK + Sbjct: 593 RRHRQSDIKYLHPDLEPILKKTYGVIIYQEQIMQIASQFANFSYGQADILRRAMSKKNRA 652 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 ++ +++ FI GA N +I+ IFEL+ KFADYGF ++HA +Y+ I+Y A++K HY Sbjct: 653 ILESERQHFIEGAVSNNYDASISERIFELILKFADYGFPRAHAVSYSKIAYIMAYLKVHY 712 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P F A ++ + N K ++A+ ++ I+PP +N +K + IY SL AIK Sbjct: 713 PNYFYANILSNVIGNETKTAIIIEEAKTQSLNILPPDINKSHWFYKATEKNIYLSLGAIK 772 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG + + I++ + + DF R+ + R++LE+L+ GA D FG +R LL Sbjct: 773 GVGYQSVKSIVDERIENGLYKDFFDFTRRIPKRIKTRKLLEALICVGAFDSFGKTRSTLL 832 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 ++D + VE++ E +F K ++ DK E+FS + S E+ LG Sbjct: 833 STIDEVIDQVSNVEQD-----EFLFNMLTPKQSYEDK---EEFSDQIISAY---EKEYLG 881 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK---TRKGSRIGW 1017 FY S HP++ I + +GI TI+ N++ ++V Q K T+ G + + Sbjct: 882 FYISNHPVEKLFYIKQYLGI-------FTIK-NSLDYQPILVQVNQFKQIRTKTGQHMAF 933 Query: 1018 VTFSEPAKEYEANFFP 1033 + + + FP Sbjct: 934 LVLDDGRTTIDGVLFP 949 >gi|314936197|ref|ZP_07843544.1| DNA polymerase III, alpha subunit [Staphylococcus hominis subsp. hominis C80] gi|313654816|gb|EFS18561.1| DNA polymerase III, alpha subunit [Staphylococcus hominis subsp. hominis C80] Length = 1067 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 353/1036 (34%), Positives = 551/1036 (53%), Gaps = 101/1036 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +HS+Y LL +L +N+++ K A+ A+AITDTN L+ +F GI+PI Sbjct: 2 FVHLNIHSTYDLLYSSLKINDVVSKAKANGYQALAITDTNVLYGFPKFYDACVNEGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G MT T+ +I L EG L +L S + + KQ Sbjct: 62 FG------------MTVMVSDEISTIETI-LFAKNNEGLHALYQLSSAINM----KQKTT 104 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRH 189 I L WLQ+ A F + + + L+ T K + +++N Sbjct: 105 IPLKWLQKYSYH--------------LAIVFKDANASHQSLIQTLKN--NESVFIN---- 144 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKDR 245 QL ++ + +V NN+ +L+ ED + L A+ ++T V KD Sbjct: 145 ---------HTSQLDFSDD-KIVFLNNARYLNPEDADTILALKAIKNNTKLDLVNDIKDA 194 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 P SE + + + NT +A C+ +Q H +LP F + Sbjct: 195 HEYFP------TSENIKELQLSEKIIANTKALADECNAEIQYHQNLLPNF--------KT 240 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + ++ + L+ L + + K Q Y RL E ++I M F YFLIV+D I Sbjct: 241 PNQQSAKSYLLEKLKYNLKEFKLDKD---QRYIDRLHHEYSIITNMGFEDYFLIVSDLIH 297 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK +++ VGPGRGS AGS+ +Y L IT IDP++F LLFERFLNP+R++MPD DIDF Sbjct: 298 FAKTHDVMVGPGRGSSAGSLVSYLLGITTIDPIKFDLLFERFLNPERVTMPDIDIDFEDT 357 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR++VI+YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ Sbjct: 358 RREKVIQYVQEKYGQYHVSGIVTFGHLLARAVARDVGRIIGFDEKTLNEISNLIPHQLG- 416 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L+ + +F+ ++ EIS+KLEGL RH STHAAGI+I D+PL P+ Sbjct: 417 -ITLEEAYQNEKFKAFVHKSYRHEKWFEISKKLEGLPRHTSTHAAGIIINDKPLYHFAPL 475 Query: 546 YRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603 D + TQ+ M E+ GL+K DFLGL+ L+++ + + + + + +D+ +PF Sbjct: 476 ---TMGDTGILTQWTMTEAERLGLLKIDFLGLRNLSIIHQIITQVKKDLNIDIDIERLPF 532 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D + + LL+ T GIFQLES G+R+ L +QP+ EDI+A+ SLYRPGP+ I Y + Sbjct: 533 NDQKVFKLLSLGNTTGIFQLESEGVRKVLMELQPEHFEDIVAVTSLYRPGPMQEIPTYIS 592 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R++ + +I +HP ++P+LK+T GVIIYQEQ+MQIA + +S +AD+LRRAM KK + Sbjct: 593 RRHRQSEIKYLHPDLEPILKKTYGVIIYQEQIMQIASQFANFSYGQADILRRAMSKKNRA 652 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 ++ +++ FI GA N +I+ IFEL+ KFADYGF ++HA +Y+ I+Y A++K HY Sbjct: 653 ILESERQHFIEGAVSNNYDASISERIFELILKFADYGFPRAHAVSYSKIAYIMAYLKVHY 712 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P F A ++ + N K ++A+ ++ I+PP +N +K + IY SL AIK Sbjct: 713 PNYFYANILSNVIGNETKTAIIIEEAKTQSLNILPPDINKSHWFYKATEKNIYLSLGAIK 772 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG + + I++ + + DF R+ + R++LE+L+ GA D FG +R LL Sbjct: 773 GVGYQSVKSIVDERIENGLYKDFFDFTRRIPKRIKTRKLLEALICVGAFDSFGKTRSTLL 832 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 ++D + VE++ E +F K ++ DK E+FS + S E+ LG Sbjct: 833 STIDEVIDQVSNVEQD-----EFLFNMLTPKQSYEDK---EEFSDQIISAY---EKEYLG 881 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK---TRKGSRIGW 1017 FY S HP++ I + +GI TI+ N++ ++V Q K T+ G + + Sbjct: 882 FYISNHPVEKLFYIKQYLGI-------FTIK-NSLDYQPILVQVNQFKQIRTKTGQHMAF 933 Query: 1018 VTFSEPAKEYEANFFP 1033 + + + FP Sbjct: 934 LVLDDGRTTIDGVLFP 949 >gi|315606343|ref|ZP_07881359.1| DNA-directed DNA polymerase III alpha subunit [Prevotella buccae ATCC 33574] gi|315252034|gb|EFU32007.1| DNA-directed DNA polymerase III alpha subunit [Prevotella buccae ATCC 33574] Length = 1240 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 364/1053 (34%), Positives = 544/1053 (51%), Gaps = 90/1053 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------Q 60 FVHL VH+ YS+L+G + N++ K D +A+TD +F EF+ + Sbjct: 4 FVHLHVHTYYSILDGQSKIANLVKKAVDDGMRGMALTDHGVMFGIKEFADICAGLNKERK 63 Query: 61 KACAAGIQPIIGCQLDID-MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 K +PI GC++ + + K+ G + +++L GY+ LI+LVSR Sbjct: 64 KEGKEPFKPIFGCEMYVARHRKEDKVKEHGDN---SGYHLIVLAKNYNGYKNLIKLVSRS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 ++ D R L++ E LI+ + +G + A + + ++FG Sbjct: 121 WV-DGYYYRPRTDREDLEKY-HEDLIVCSACIAGEVPAKILKGDIAGAREACEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD------------RYRESQV-VQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + R ++V ++ A + + L+ TN+ F +E E Sbjct: 179 DDYYLELQRHEVTDPTVLANRETYPLQQRANKVLIEFAKEYGIKLICTNDCHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ ++ +R R + + K++ EM IFSD+P+AL NT+EI + F Sbjct: 239 AHDHLLCLSTQADLNDPNRMRYSKQEWFKSKQEMNDIFSDIPDALTNTLEILDKVEFYSI 298 Query: 287 VHAPILPRFI--------EKECDDIQKEE-----------ENEL---------------- 311 H PI+P F E+ KEE EN+L Sbjct: 299 EHGPIMPFFPIPEDFGTEEQWRQKFSKEELYKEFTCDEKGENQLSPEDGQAVIDRLGGYD 358 Query: 312 ---RNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R K A +LA K Y +++ ++ +DFEL+V+ M F GYFLIV DFI Sbjct: 359 KIYRIKFEADYLGKLAYDGAKKLYGDPLSEEVKEHIDFELHVMKTMGFPGYFLIVQDFIN 418 Query: 366 WAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A+ K + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF Sbjct: 419 AAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--- 481 D R V+++V +KYGHE A IIT+ S+ K +++DV R ++P + + LCK IP+ Sbjct: 479 DGRGRVLQWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLERSNALCKAIPDRLP 538 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 D A AI +EA ++ +R ++ ++ LEG R HA G +I P+S Sbjct: 539 DGAKMNLTNAIKYTPELQEAAVSIDERERNTIKYAKMLEGTVRGTGIHACGFIICRNPIS 598 Query: 541 QLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Q G Sbjct: 599 DWVPISTADDPDFPDKKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKQTTGD 658 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VDL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ +LYRPGP Sbjct: 659 VVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPGP 718 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D LR Sbjct: 719 MDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDALR 778 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK K +D K +FI +NG + I+ KFA Y FNKSHA Y+ ++Y Sbjct: 779 KAMGKKKKAIVDAMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATCYSWVAY 838 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QTA++K HYP EF+AA MT + +I K ++ + NI + P VN F V Sbjct: 839 QTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSMNISTLGPDVNESYSGFGVNRKG 898 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + L+AIKG+GT A I+ E + P+ + DF RVD +NR+ ESL +G D Sbjct: 899 EIRFGLSAIKGMGTAAAEAIVSEREKNGPYKDIFDFAQRVDYSCVNRKAFESLALSGGFD 958 Query: 893 CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 FG R Q + LD++ +Y Q + ++ ++F + K V Sbjct: 959 GFGLQREQYMGVNSKGEVFLDSLVRYGQRYQLDQQQATNSLFGGMDMVEIATPPVPKGEV 1018 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 ++ + E+ ++G Y S HPLD Y IL+ + Sbjct: 1019 WSTIEKLNKERDLVGIYLSAHPLDEYTVILKSI 1051 >gi|325860343|ref|ZP_08173463.1| DNA polymerase III, alpha subunit [Prevotella denticola CRIS 18C-A] gi|325482149|gb|EGC85162.1| DNA polymerase III, alpha subunit [Prevotella denticola CRIS 18C-A] Length = 1239 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 357/1056 (33%), Positives = 540/1056 (51%), Gaps = 96/1056 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------ 64 +VHL VH+ YS+L+G + ++DK AD +A+TD +F EFS CA Sbjct: 4 YVHLHVHTDYSVLDGQSKVTRLVDKAVADGMKGMAVTDHGVMFGIKEFSD-YCAKVNKGR 62 Query: 65 -----AGIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 A +P+ GC++ + M D K + + +++L GY+ LI+LV Sbjct: 63 KEKGEAPFKPVFGCEMYVARRTMHDKDKSMHDN-----SGYHLIVLAKNYHGYKNLIKLV 117 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S+ ++ D R L++ E LI+ + +G I + + A + + + Sbjct: 118 SKAWV-DGYYYKPRTDREQLEKY-HEDLIVCSACIAGEIPNKIIHDDIEGAREACEWYHR 175 Query: 177 LFGDRLYVNLQRHR-----------GYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEE 223 +FGD Y+ LQRH Y +++ V L + E + ++ TN+ F +E Sbjct: 176 VFGDDFYLELQRHEVKDPTLVANREAYPLQQKANKVLLRFAEEYGIKVICTNDCHFEDKE 235 Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283 EAHD L+ ++ + + R R + + K R EM +FSD+PEAL NT+EI + Sbjct: 236 TAEAHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEI 295 Query: 284 ILQVHAPILPRF-------IEKEC------DDIQKE-------------EENELRNKAVA 317 H PI+P F E+E DD+ +E EE + + + Sbjct: 296 YSIDHGPIMPFFPIPEDFGTEEEWRKKFSEDDLYREFTTDENGEHPLPAEEGQKVIRRLG 355 Query: 318 GLE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 G E +LA K Y + + + + FEL+V+ M F GYFLIV D Sbjct: 356 GYEKIYRIKFEADYLAKLAYDGAGKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLIVQD 415 Query: 363 FIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 FI A+ K + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D D Sbjct: 416 FINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTD 475 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F D R +V+++V +KYGHE A IIT+ ++ K ++RDV R ++ + LCK IP+ Sbjct: 476 FDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIRDVARVEKLSLDVSNGLCKAIPD 535 Query: 482 DPAHPVSL---QAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDR 537 + + AI R +EA +++ + +R ++ ++ LEG R HA G +I Sbjct: 536 RLPDGMKMNLTNAIKCTPRLQEAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFIICRN 595 Query: 538 PLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 P+ VP+ D +PVTQ++ IE GLIK DFLGLKTL+ L+++ + Q Sbjct: 596 PIDDWVPVSTASDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVIRQT 655 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G VDL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ +LYR Sbjct: 656 TGDVVDLDNIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYR 715 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D Sbjct: 716 PGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESD 775 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 LR+AMGKK K +D+ K +FI +NG + I+ KFA Y FNKSHA Y+ Sbjct: 776 ALRKAMGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATCYSW 835 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++YQTA++K HYP E++AA MT + +I K ++ + I + P +N + F V Sbjct: 836 VAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKITTLGPDINESQIGFGVN 895 Query: 832 D-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I + LAAIKG+G + A I+ E + + + DF RVD +NR+ ESL ++G Sbjct: 896 SRGEIRFGLAAIKGMGASAAESIVREREKNGLYKDIYDFAERVDISNVNRKAFESLAYSG 955 Query: 890 ALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 D FG R Q LD I +Y Q + + + ++F K Sbjct: 956 GFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAQQQNSLFGGMDAVEVMHPVAPK 1015 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + E+ ++G Y S HPLD Y +L M Sbjct: 1016 TEKWPAIEKLNKERELVGIYLSAHPLDEYSVVLDNM 1051 >gi|327314343|ref|YP_004329780.1| DNA polymerase III subunit alpha [Prevotella denticola F0289] gi|326944718|gb|AEA20603.1| DNA polymerase III, alpha subunit [Prevotella denticola F0289] Length = 1239 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 357/1056 (33%), Positives = 540/1056 (51%), Gaps = 96/1056 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------ 64 +VHL VH+ YS+L+G + ++DK AD +A+TD +F EFS CA Sbjct: 4 YVHLHVHTDYSVLDGQSKVTRLVDKAVADGMKGMAVTDHGVMFGIKEFSD-YCAKVNKGR 62 Query: 65 -----AGIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 A +P+ GC++ + M D K + + +++L GY+ LI+LV Sbjct: 63 KEKGEAPFKPVFGCEMYVARRTMHDKDKSMHDN-----SGYHLIVLAKNYHGYKNLIKLV 117 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S+ ++ D R L++ E LI+ + +G I + + A + + + Sbjct: 118 SKAWV-DGYYYKPRTDREQLEKY-HEDLIVCSACIAGEIPSKIIHDDIEGAREACEWYHR 175 Query: 177 LFGDRLYVNLQRHR-----------GYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEE 223 +FGD Y+ LQRH Y +++ V L + E + ++ TN+ F +E Sbjct: 176 VFGDDFYLELQRHEVKDPTLVANREAYPLQQKANKVLLRFAEEYGIKVICTNDCHFEDKE 235 Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283 EAHD L+ ++ + + R R + + K R EM +FSD+PEAL NT+EI + Sbjct: 236 TAEAHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEI 295 Query: 284 ILQVHAPILPRF-------IEKEC------DDIQKE-------------EENELRNKAVA 317 H PI+P F E+E DD+ +E EE + + + Sbjct: 296 YSIDHGPIMPFFPIPEDFGTEEEWRKKFSEDDLYREFTTDENGEHPLPAEEGQKVIRRLG 355 Query: 318 GLE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 G E +LA K Y + + + + FEL+V+ M F GYFLIV D Sbjct: 356 GYEKIYRIKFEADYLAKLAYDGAGKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLIVQD 415 Query: 363 FIQWAK-KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 FI A+ K + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D D Sbjct: 416 FINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTD 475 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F D R +V+++V +KYGHE A IIT+ ++ K ++RDV R ++ + LCK IP+ Sbjct: 476 FDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIRDVARVEKLSLDVSNGLCKAIPD 535 Query: 482 DPAHPVSL---QAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDR 537 + + AI R +EA +++ + +R ++ ++ LEG R HA G +I Sbjct: 536 RLPDGMKMNLTNAIKCTPRLQEAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFIICRN 595 Query: 538 PLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 P+ VP+ D +PVTQ++ IE GLIK DFLGLKTL+ L+++ + Q Sbjct: 596 PIDDWVPVSTASDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVIRQT 655 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G VDL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ +LYR Sbjct: 656 TGDVVDLDNIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYR 715 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D Sbjct: 716 PGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESD 775 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 LR+AMGKK K +D+ K +FI +NG + I+ KFA Y FNKSHA Y+ Sbjct: 776 ALRKAMGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATCYSW 835 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++YQTA++K HYP E++AA MT + +I K ++ + I + P +N + F V Sbjct: 836 VAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKITTLGPDINESQIGFGVN 895 Query: 832 D-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I + LAAIKG+G + A I+ E + + + DF RVD +NR+ ESL ++G Sbjct: 896 SRGEIRFGLAAIKGMGASAAESIVREREKNGLYKDIYDFAERVDISNVNRKAFESLAYSG 955 Query: 890 ALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 D FG R Q LD I +Y Q + + + ++F K Sbjct: 956 GFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAQQQNSLFGGMDAVEVMHPVAPK 1015 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + + E+ ++G Y S HPLD Y +L M Sbjct: 1016 TEKWPAIEKLNKERELVGIYLSAHPLDEYSVVLDNM 1051 >gi|288926043|ref|ZP_06419972.1| DNA polymerase III, alpha subunit [Prevotella buccae D17] gi|288337263|gb|EFC75620.1| DNA polymerase III, alpha subunit [Prevotella buccae D17] Length = 1240 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 363/1053 (34%), Positives = 544/1053 (51%), Gaps = 90/1053 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------Q 60 FVHL VH+ YS+L+G + N++ K D +A+TD +F EF+ + Sbjct: 4 FVHLHVHTYYSILDGQSKIANLVKKAVDDGMRGMALTDHGVMFGIKEFADICAGLNKERK 63 Query: 61 KACAAGIQPIIGCQLDID-MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 K +PI GC++ + + K+ G + +++L GY+ LI+LVSR Sbjct: 64 KEGKEPFKPIFGCEMYVARHRKEDKVKEHGDN---SGYHLIVLAKNYNGYKNLIKLVSRS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 ++ D R L++ E LI+ + +G + A + + ++FG Sbjct: 121 WV-DGYYYRPRTDREDLEKY-HEDLIVCSACIAGEVPAKILKGDIAGAREACEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD------------RYRESQV-VQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + R ++V ++ A + + L+ TN+ F +E E Sbjct: 179 DDYYLELQRHEVTDPTVLANRETYPLQQRANKVLIEFAKEYGIKLICTNDCHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ ++ +R R + + K++ EM IFSD+P+AL NT+EI + F Sbjct: 239 AHDHLLCLSTQADLNDPNRMRYSKQEWFKSKQEMNDIFSDIPDALTNTLEILDKVEFYSI 298 Query: 287 VHAPILPRFI--------EKECDDIQKEE-----------ENEL---------------- 311 H PI+P F E+ KEE EN+L Sbjct: 299 EHGPIMPFFPIPEDFGTEEQWRQKFSKEELYKEFTCDEKGENQLSPEDGQAVIDRLGGYD 358 Query: 312 ---RNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R K A +LA K Y +++ ++ +DFEL+V+ M F GYFLIV DFI Sbjct: 359 KIYRIKFEADYLGKLAYDGAKKLYGDPLSEEVKEHIDFELHVMKTMGFPGYFLIVQDFIN 418 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF Sbjct: 419 AAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--- 481 D R V+++V +KYGHE A IIT+ S+ K +++DV R ++P + + LCK IP+ Sbjct: 479 DGRGRVLQWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLERSNALCKAIPDRLP 538 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 D A AI +EA ++ +R ++ ++ LEG R HA G +I P+S Sbjct: 539 DGAKMNLTNAIKYTPELQEAAVSIDERERNTIKYAKMLEGTVRGTGIHACGFIICRNPIS 598 Query: 541 QLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Q G Sbjct: 599 DWVPISTADDPDFPDKKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKQTTGD 658 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VDL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ +LYRPGP Sbjct: 659 VVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPGP 718 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D LR Sbjct: 719 MDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDALR 778 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK K +D K +FI +NG + I+ KFA Y FNKSHA Y+ ++Y Sbjct: 779 KAMGKKKKAIVDAMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATCYSWVAY 838 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QTA++K HYP EF+AA MT + +I K ++ + NI + P VN F V Sbjct: 839 QTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSMNISTLGPDVNESYSGFGVNRKG 898 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + L+AIKG+GT A I+ E + P+ + DF RVD +NR+ ESL +G D Sbjct: 899 EIRFGLSAIKGMGTAAAEAIVSEREKNGPYKDIFDFAQRVDYSCVNRKAFESLALSGGFD 958 Query: 893 CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 FG R Q + LD++ +Y Q + ++ ++F + K V Sbjct: 959 GFGLQREQYMGVNSKGEVFLDSLVRYGQRYQLDQQQATNSLFGGMDMVEIATPPVPKGEV 1018 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 ++ + E+ ++G Y S HPLD Y IL+ + Sbjct: 1019 WSTIEKLNKERDLVGIYLSAHPLDEYTVILKSI 1051 >gi|239978950|ref|ZP_04701474.1| DNA polymerase III subunit alpha [Streptomyces albus J1074] gi|291450830|ref|ZP_06590220.1| DNA polymerase III subunit alpha [Streptomyces albus J1074] gi|291353779|gb|EFE80681.1| DNA polymerase III subunit alpha [Streptomyces albus J1074] Length = 1182 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 355/1075 (33%), Positives = 553/1075 (51%), Gaps = 70/1075 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ D IA++D NL A +F A AG+ Sbjct: 7 PPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHSAEKAGVT 66 Query: 69 PIIGCQLDIDMQDN-LKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118 PIIG + + + K Q P + + + + G L L S Sbjct: 67 PIIGIEAYVAPESRRTKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFRLSSD 126 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 Y ++ R+ + + +EGLI TG SG + + A + ++++F Sbjct: 127 AYSEGWLQKWPRMDKESISQW-SEGLIASTGCPSGEVQTRLRLGQEEEALRAAAEYQEIF 185 Query: 179 G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G DR ++ L H +R ++ + +P + TN+S + + AHD L+ + Sbjct: 186 GKDRYFLELMDHGIEIERRVRQGLLDIGKKLGIPPLVTNDSHYTYSHESVAHDALLCIQT 245 Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA-PIL 292 +S DR R +YLK+ EM +I S E NT+ +A + ++ Sbjct: 246 GKNLSDPDRFRFDGTGYYLKSTEEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFEKRDLM 305 Query: 293 PRFIEKECDDIQK--EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 P+F DI E + + G+ R G +D +++ ++E++VI + Sbjct: 306 PKF------DIPDGFTEVTWFQEEVRRGMARRFPAGV------PEDRQRQAEYEMDVIIQ 353 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP Sbjct: 354 MGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNP 413 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 414 ERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYA 473 Query: 471 QVDRLCKLIPND-------------PAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517 DRL K +P D P HP +A R +P V ++++ ++ Sbjct: 474 MGDRLTKAMPADVLGKGIDLDGITNPKHPRYSEA----GEIRGMYENEPDVKKVIDTAKG 529 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EGL R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ Sbjct: 530 VEGLVRQMGVHAAGVIMSSEPIVDHAPLWTRHTDGVTITQWDYPQCESLGLLKMDFLGLR 589 Query: 578 TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ + + A +G+ +DL +P DD +T+ LL TLG+FQ + MR L M+ Sbjct: 590 NLTIMDDARKMVEANKGIDLDLLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRLMK 649 Query: 637 PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690 PD EDI A+ +LYRPGP +++ Y RKNG+++I IHP ++ LKE T G+I+ Sbjct: 650 PDNFEDISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEILGLTYGLIV 709 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQV + AQ+++GYSL EAD+LRR MGKK EE+ K F GA K G S ++ Sbjct: 710 YQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQEGAKKKGFSDEAIQALW 769 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R Sbjct: 770 DVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECR 829 Query: 811 QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868 + I+++PP VN +F D+ I + L A++ VGT I+ A A F S D+ Sbjct: 830 RMKIKVLPPDVNESVHNFAAQSDDVILFGLEAVRNVGTNVVESIIRARKAKGKFSSFPDY 889 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +++++ N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 890 LDKIEAQACNKRTTESLIKAGAFDALGHTRKGLTAHYEPMIDNVVAVKRKEAEGQFDLFG 949 Query: 929 HEKGTFSDKITLEKFSVE--------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 G D F ++ + + E+ +LG Y S HPL + +L Sbjct: 950 ---GMGDDNADEPGFGLDIEFTDEEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKAD 1006 Query: 981 KGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + G+ + + ++ Q+K T++G+ T + A E FFP Sbjct: 1007 AGIGQLTGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1061 >gi|158520278|ref|YP_001528148.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3] gi|158509104|gb|ABW66071.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3] Length = 1217 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 334/931 (35%), Positives = 513/931 (55%), Gaps = 41/931 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+G + ++++ + + PA+AITD +F ++F +A AGI+PI Sbjct: 8 FVHLHVHTCYSLLDGIIRPDDLVARAVEYKMPAVAITDHGTMFGVIQFYMEAVRAGIKPI 67 Query: 71 IGCQLDIDMQDNLKMTNQGKTP--FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC+ + + T KTP + +VLL T EGY+ L L + + D Sbjct: 68 IGCECYVAPR-----TIADKTPADHAGLSHLVLLAETMEGYRNLCRLAT-IAQQDGFFHK 121 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI + LQ+ +GLI L+ G I A+ + + GDR + + Sbjct: 122 PRIDKALLQK-HAKGLIGLSACLKGEIPHLICRGRQDEADAAARQYCDMLGDRNFFLEVQ 180 Query: 189 HRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + G + ++ ++ +PLV TN+ +L ED AH++ + + + DR Sbjct: 181 NNGLPEQETVNNALLDMSRRLSIPLVGTNDCHYLDPEDSRAHEIALCLQTGQTIHDTDRL 240 Query: 247 RVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPILPRFIEKECDD 302 + + K+ EM P A NTV IA RC H P+L K D Sbjct: 241 KFDTNQLNFKSTGEMCVFLEPFPRAAANTVAIAERCQVAFDFSARHFPVLETPPGKTMAD 300 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFLIV 360 + L + A+AGL+ R Q + HA Y+QRL +EL VI M GYFLI+ Sbjct: 301 M-------LEDSAMAGLKKRW-QHICKQSSHADKSVYQQRLAYELAVINEMGAPGYFLII 352 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI +AK N I GPGRGS GS+ Y L IT +DP+ LLFERFLNP+R MPD D+ Sbjct: 353 ADFIAYAKNNGILTGPGRGSAPGSLVCYCLGITGVDPIEHGLLFERFLNPERNVMPDIDV 412 Query: 421 DFCQDRRDEVIRYVQNKY----GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D C + R+++ +Y+ +KY G + A I T G+++++AALR+VGRAL MP V+++ Sbjct: 413 DICINGREKIHQYLMDKYNRDDGEDYAACIATLGTMRSRAALREVGRALIMPLDDVNKVA 472 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP P A+ + R + P L+++ +KLEGL H +AAGIV+ D Sbjct: 473 KLIP--PGARSLDDALKKEPALRALIDSKPEFGELMDVIRKLEGLPFHILMNAAGIVLSD 530 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 +PL+ P+YR + ++ +TQ + + +E GL + D LG++ LT++ +L + +G + Sbjct: 531 KPLTCYTPLYR-FKGEM-ITQLDARSLETMGLARLDLLGMRDLTVISDTLQLIKNQGRQT 588 Query: 597 -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 DLS I D T LL+ T G+FQL S+GM++ L +P + ++ L++LYRPG + Sbjct: 589 PDLSRIDTTDAATCQLLSKGDTFGVFQLASTGMKELLVKARPRSLSEVAVLIALYRPGLL 648 Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 +N +V Y RK G + ++P+LKET G+ +YQEQ+MQ Q+L+GY+ ++D Sbjct: 649 ENGMVADYLGRKQGLKDTTYPTAKLEPILKETCGLPVYQEQIMQAVQVLAGYTPGQSDDF 708 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 R+AMGK+I E++ ++RFI+GA+ GI K A+ +FE L F YGFNK+H+ AYA I+ Sbjct: 709 RKAMGKRIAEKIADHRQRFINGAAAKGIDKATALQLFEQLEYFGAYGFNKAHSIAYAFIA 768 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 +Q A +K H+P EF+A + + V++I + + R NI ++PP VN F V + Sbjct: 769 WQMACLKAHFPAEFMAVWLDISFGCVDRIARLIGECRDSNIPVLPPDVNQSARQFTVVNG 828 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKK----LNRRVLESLVFA 888 +I LA +K I+ E +A PF SL DFC+R+ + + +R+ LE+LV A Sbjct: 829 QIRCGLACVKKTDKGLIDAIIAERTAAGPFVSLSDFCNRMSAGRPELLQDRKALENLVKA 888 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 GA D G +R Q++ LD I K + +++ R Sbjct: 889 GAFDSTGATRSQMMAVLDEILKPSLDLQQPR 919 >gi|254382569|ref|ZP_04997927.1| DNA polymerase III subunit alpha [Streptomyces sp. Mg1] gi|194341472|gb|EDX22438.1| DNA polymerase III subunit alpha [Streptomyces sp. Mg1] Length = 1180 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 356/1084 (32%), Positives = 558/1084 (51%), Gaps = 80/1084 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A Sbjct: 1 MTKTP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAQK 59 Query: 65 AGIQPIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 +G+ PIIG + + + + N + G+ P + + + + G L Sbjct: 60 SGVTPIIGIEAYVAPESRRNKRRIQWGQ-PHQKRDDVSGSGGYTHKTIWAANSTGLHNLF 118 Query: 114 ELVSRMY----LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L S Y L + W +EGLI TG SG + A K Sbjct: 119 RLSSDAYAEGWLTKWPRMDKETISQW-----SEGLIASTGCPSGELQTRLRLGQFDEALK 173 Query: 170 RLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 ++ +FG DR ++ L H +R ++++ +P + TN+S + + A Sbjct: 174 SASEYQDIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYASEATA 233 Query: 228 HDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRC-SF 283 HD L+ + +S DR R +YLK+ EM +I S E NT +A + + Sbjct: 234 HDALLCIQTGKNLSDPDRFRFDGTGYYLKSTEEMYAIDSSDAWQEGCANTKLVADQIDTE 293 Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 + ++P+F E E + R + + G+ R G D ++ ++ Sbjct: 294 GMFKFRNLMPKFDIPEG----HTEVSWFREETMRGMHRRYPGGI------PDDRLKQAEY 343 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E++ I M F GYFL+VADFI WAK I VGPGRGS AGS+ AYA+ ITD+DPL L+ Sbjct: 344 EMDTIISMGFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPLTHGLI 403 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G+++AK A++D R Sbjct: 404 FERFLNPERVSMPDVDIDFDERRRVEVIRYVTEKYGQDKVAMIGTYGTIKAKNAIKDSAR 463 Query: 464 ALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDR 510 L PY+ DRL K +P DP HP +A R +P V + Sbjct: 464 VLGYPYAMGDRLTKAMPADVLGKGIPLSGILDPQHPRYGEA----GEIRGMYENEPDVKK 519 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 +++ ++ +EGL R HAAG+++ ++ VP++ + +TQ++ E GL+K Sbjct: 520 VIDTARGVEGLVRQMGVHAAGVIMSSETITDHVPVWVRHTDQVTITQWDYPSCESLGLLK 579 Query: 571 FDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 DFLGL+ LT++ ++ + A +G+ +DL +P DD +T+ LL TLG+FQ + MR Sbjct: 580 MDFLGLRNLTIMDDAVKMVKANKGIDIDLLALPLDDPKTFELLGRGDTLGVFQFDGGPMR 639 Query: 630 QALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE--- 684 L M+PD EDI A+ +LYRPGP +++ Y RKN +++I IHP ++ L+E Sbjct: 640 SLLRLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEGPLEEVLA 699 Query: 685 -TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 T G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK EE+ K F GA K G S Sbjct: 700 VTYGLIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVIFEGGAKKKGFSD 759 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 ++++L FA Y FNK+H+AAY ++SY TA++K ++P E++A +T D+ +K Sbjct: 760 QAIKALWDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKANFPAEYMAGLLTSVKDDKDKSA 819 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKP 861 + + R+ I+++PP+VN +F GD+ I + L A++ VG I++ A Sbjct: 820 IYLNECRRMGIKVLPPNVNESEPNFAAQGDDVILFGLTAVRNVGNNVVDSIIKTRKAKGK 879 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + + DF +V++ N+R +ESL+ AGA D G++R L+ + + V++ Sbjct: 880 YSTFPDFLDKVEAVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAE 939 Query: 922 KHENIFAHEKGTFSDKITLEK----FSVENSSVRFEN------EQRVLGFYFSGHPLDVY 971 ++F G D+ ++ VE S V +E E+ +LG Y S HPL Sbjct: 940 GQFDLF----GAMGDEAGGDEPGFGLDVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGL 995 Query: 972 KPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +L G + G + + ++ Q+K T++G+ T + A E Sbjct: 996 EHVLSDKTDAGISQLTGGEHSDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIEC 1055 Query: 1030 NFFP 1033 FFP Sbjct: 1056 MFFP 1059 >gi|294787463|ref|ZP_06752716.1| DNA polymerase III, alpha subunit [Parascardovia denticolens F0305] gi|315226967|ref|ZP_07868755.1| DNA-directed DNA polymerase III alpha subunit [Parascardovia denticolens DSM 10105] gi|294484819|gb|EFG32454.1| DNA polymerase III, alpha subunit [Parascardovia denticolens F0305] gi|315121099|gb|EFT84231.1| DNA-directed DNA polymerase III alpha subunit [Parascardovia denticolens DSM 10105] Length = 1189 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 357/1074 (33%), Positives = 563/1074 (52%), Gaps = 66/1074 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEFSQKACAAGIQ 68 SFVHL H+ YS L+GA+ + ++ +A D Q A+ ITD N+ A E + A AGI+ Sbjct: 8 SFVHLHNHTDYSTLDGAVPVKKMV-AVAKDLGQKAVGITDHGNMHGAYEMWRTAVDAGIK 66 Query: 69 PIIGCQLDID----MQDNLKMTNQGK-------TPFPTVPSIVLLVSTAEGYQRLIELVS 117 PIIG + I D ++ K + + + + G L++ S Sbjct: 67 PIIGIEAYITPGTARGDKTRVHWGTKEQHSDDVSANGSYTHMTMWAQDDTGLVNLLKASS 126 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 L ++ R+ LQ +G+I TG SG + + A + + + Sbjct: 127 VANLEGLMGKNPRMDRDILQTY-HQGIIATTGCPSGAVQTRLRLGQYKEALREAGELQDI 185 Query: 178 FG-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG + YV + H R +Q ++++A PLVATN+ + E D A D L+ + Sbjct: 186 FGKENFYVEIMDHGLEIETRVTQDLLRIAKEIGAPLVATNDCHYGLESDAAAQDALLCIN 245 Query: 236 HSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH--APIL 292 + ++ DR R Y LK+ +M +F + P+A +NT+EIA RC+ + + + Sbjct: 246 SGSRLTDSDRFRFNGSGYFLKSAQQMRDLFKEFPQACDNTLEIAERCNVMFDDYEDGAFM 305 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P F E D +++ GLE R G +D ++ D+E VI +M+ Sbjct: 306 PEFDCPEGWDATSLFLHDVEQ----GLEKRYPAGV------PEDVAKQADYECGVICQMQ 355 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VAD+I WAK + + VGPGRGS AGS+ AYA+ IT++DP++ L+FERFLNP+R Sbjct: 356 FCGYFLVVADYINWAKTHGVMVGPGRGSAAGSMVAYAMGITELDPIKHGLIFERFLNPER 415 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +S+PD D+DF R++V+RYV KYG ++VAQ +T+G+++ K AL+D R + + Sbjct: 416 VSLPDIDVDFDPAGREKVLRYVTEKYGSDKVAQCVTYGTIKTKQALKDSARIMDYDFQMG 475 Query: 473 DRLCKLIPND-PAHPVSLQAIAD--------DSRFREARLADPSVDRLLEISQKLEGLYR 523 + + K +P +SL I D FR+ +P V ++ E ++ +EGL R Sbjct: 476 ETMTKALPGAVGGKDISLHDIFDLTAKRYPEAQEFRDLYNENPDVQKITEEAKGIEGLIR 535 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLL 582 HA ++ +P++ P+ + R+D V T F E GL+K DFLGL LT++ Sbjct: 536 QTGVHACATIMASQPITNTSPLMK--RTDGTVTTTFEYHTCETLGLVKMDFLGLANLTVI 593 Query: 583 QKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++++ + G +DL IP DD TY LL++ TLG+FQL+S GM+ L+ ++PD Sbjct: 594 KEAIKNIHDNGKGDIDLEKIPIDDKATYDLLSSGHTLGVFQLDSDGMQSLLKQLKPDNFN 653 Query: 642 DIIALVSLYRPGPIDNIVVYNN---RKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQ 694 DI AL++LYRPGP+D + +NN RKNG ++I IHP ++ +L ET G+I+YQEQ Sbjct: 654 DISALIALYRPGPMD-VDSHNNYAKRKNGLQEITPIHPELEKPLAQVLDETYGLIVYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V A++L+GYSL ADVLRRAMGKK E + K+K F +G ++G S+ A ++++L Sbjct: 713 VQSAARILAGYSLGRADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSEEAAQAVWDVLV 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNK+H+AAY ++SY TA++KTHYPVEF+AA + E N +K + + R+ NI Sbjct: 773 PFAGYAFNKAHSAAYGLVSYWTAYLKTHYPVEFMAALLQGERSNKDKTALYLGECRRMNI 832 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM----EASADKPFDSLEDFCS 870 +++PP VN + I + L A++ VG I+ +A F + D+ + Sbjct: 833 KVLPPDVNESVGHYSAVGKDIRFGLGAVRNVGDKVVDAIVAERDKAGGKGKFVNFLDWIN 892 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNI----QKYAQWVEKNRTNK 922 R+ + LN+R +ESL+ GA D +R L ++D + +K A+ + Sbjct: 893 RMPVEVLNKRTVESLIKGGAFDSIDPNRRALFTIHQTAIDQVIPLKRKEAEGQFDLFADS 952 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI---LRKMG 979 E+ A I++ + + E+ +LG Y S HPL + L M Sbjct: 953 EEDDSASAAALGDANISVPPIDEWDKKTKLNFEREMLGLYVSDHPLSGLASVLASLSDMS 1012 Query: 980 IKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I AT+ I +A +V ++ ++ G VT + +A FF Sbjct: 1013 IAQLLNRAATMPEKAQITIAGLVTGVDRRVSKAGKPWAIVTLEDLEGSIQALFF 1066 >gi|111610197|gb|ABH11587.1| DNA-directed DNA polymerase alpha chain [Lactobacillus helveticus CNRZ32] gi|328467460|gb|EGF38535.1| DNA polymerase III, alpha subunit [Lactobacillus helveticus MTCC 5463] Length = 1035 Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust. Identities = 341/1028 (33%), Positives = 552/1028 (53%), Gaps = 52/1028 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ ++++++ A+ ++D N + + F + A AGI+P++G Sbjct: 6 LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLSDVNVTYGLVNFYELAKKAGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132 QL ++ G ++ T GY L+ L S + +L D G+ + + Sbjct: 66 QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + + F + Q+ + K+L D LY+ + + Sbjct: 116 LKDLSKYLADLLLIVPANTKSEL-LSLFETNKQLGSDLIRDLKELTSD-LYLGVYANPSM 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251 Y + V L+ +LPL+AT +S +L+ D L A+A + Q P + Sbjct: 174 QNYIDY-VRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKI-QDALPLAKQEG 231 Query: 252 -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HYL +++ + DL +A+ NT ++A +C+ + P+LP++ +K+ E Sbjct: 232 SHYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----VTSE 287 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L A GL+ R Q I +Y++RL++EL VI +M F YFLIV D I + Sbjct: 288 EYLHYLAQTGLQQRFGQNKIPA-----EYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS GS+ +Y+L IT++DP+ ++LLFERFLNP R MPD D+D +RD Sbjct: 343 RVQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRD 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + ++ + IP ++ Sbjct: 403 TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWVDAIPYSKGK-IT 461 Query: 489 LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ SR E RL A P L + + LEGL RH S HAAG+VI D ++ + + Sbjct: 462 LKEAYQQSR--ELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGL 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 +PVTQ K++E GL+K DFLGL+ LT+L L+ + Q+G+K+D + IP +D Sbjct: 520 QAGPLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLND 578 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T +FQ ES G+RQ L + PD ED++A+ +LYRPGP+ NI + RK Sbjct: 579 AQTLQLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRK 638 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ + Sbjct: 639 NGQEAVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVI 698 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +++K +FI+G K G +K +A +++ + +FA+YGFN+SHA AY I+Y A++K HYP Sbjct: 699 EQEKGKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPA 758 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F A + K + + A++ NI+I+PP +N +++ + + +I L AIKG+ Sbjct: 759 AFYTAMLNSAAG--AKAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGL 816 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 AR I A KP+ SL DF R+D K L +++L+ AGA D +R +LL + Sbjct: 817 RVDFAREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNC 874 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D I Q +N + + G K E E +++ E++VLGF + Sbjct: 875 DEIIANVQLTGQNIS------LSEILGNAPLKPADEPTGAEKAAM----EEKVLGFSTTT 924 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PL + +K + + G + ++ +Q +T+ G + + +F++ + Sbjct: 925 SPLIAVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSG 981 Query: 1026 EYEANFFP 1033 E E FP Sbjct: 982 EQEVVIFP 989 >gi|258508368|ref|YP_003171119.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] gi|257148295|emb|CAR87268.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus GG] gi|259649682|dbj|BAI41844.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] Length = 1098 Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust. Identities = 347/1041 (33%), Positives = 543/1041 (52%), Gaps = 85/1041 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L +++ A+A+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q++I ++++ GY +L++L +++ L Q Sbjct: 62 LLGMQIEI-----------------ADAKLLVIAENNTGYHQLLKLSTQIMLAQQ----- 99 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 L++ + GL +T S P A A+ L T K LY+ + Sbjct: 100 --PLAFADLLPLNGLAAVTLPDS-PFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGVD-- 154 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + E + A T +LPL+A N L+ D V++A+ + ++ +D P +T Sbjct: 155 ---EEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIEAGSQLNFRD-PVLT 210 Query: 250 P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 +LK ++ F + L A+ T IA R + P LP + + Q Sbjct: 211 DAGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QT 266 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVA 361 ++ L +LA+ +AK +H Q Y+ RL++EL VI M F+ YFL+V Sbjct: 267 SSKDYL---------TKLAESGLAKRFHGQSIPPAYQDRLEYELRVIIEMGFADYFLVVW 317 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A K NI G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R MPD D+D Sbjct: 318 DVMNYAHKVNIMTGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLD 377 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RR E+I+YV +KYG +AQIITFG+ AK A+RDV R + + + K IPN Sbjct: 378 IPDNRRGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPN 437 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540 + L+ + S+ + +AD +R+L + + LEGL RH STHAAGIV+ + PL+ Sbjct: 438 --LFHIDLKTAYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 V + + L TQ +E GL+K DFLGLK L +L + F+ + G D Sbjct: 496 DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPK 554 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ESSG++ L ++P ED++A+ +LYRPGP++NI Sbjct: 555 AIPLDDQPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENID 614 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RKNG+E I P + +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K Sbjct: 615 TFIARKNGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSK 674 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+ +++ A++ Sbjct: 675 KKSSVLAAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYL 734 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP F AA M M+N+ K++ + Q+A+ + ++ P +N FK+ +I + L Sbjct: 735 KVHYPAAFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGL 794 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 +IKG+ I A + PF L D R+D K L ++ AGA D F +R Sbjct: 795 LSIKGMRRDFVEAIFAARKNGPFRDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRA 854 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE----NSSVRFENE 955 Q L +LD + + + ++ G FS L ++E +S R E E Sbjct: 855 QTLANLDELINSVK------------LAGNDVGLFS---MLAPKTIEVPEMPASERLEAE 899 Query: 956 QRVLGFYFSGHPLDVYKPI---LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 VLG Y SGHP+D Y P+ R + + EE G + + +V ++ +T+ G Sbjct: 900 AEVLGVYLSGHPVDKYAPLKTQYRLINVSDLEE------GRAVDILLLVRHIKRIRTKTG 953 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + ++ + FP Sbjct: 954 KPMAFIDGQDATGNVSLTIFP 974 >gi|199598719|ref|ZP_03212133.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus HN001] gi|199590407|gb|EDY98499.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus HN001] Length = 1098 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 347/1041 (33%), Positives = 544/1041 (52%), Gaps = 85/1041 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L +++ A+A+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q++I ++++ GY +L++L +++ L Q Sbjct: 62 LLGMQIEI-----------------ADAKLLVIAENNTGYHQLLKLSTQIMLAQQ----- 99 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 L++ + GL +T +S P A A+ L T K LY+ + Sbjct: 100 --PLAFADLLPLNGLAAVTLPNS-PFGVAVSERHEDQAQTFLTTLKAKQPSSLYLGVD-- 154 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + E + A T +LPL+A N L+ D V++A+ + ++ +D P +T Sbjct: 155 ---EEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIEAGSQLNFRD-PVLT 210 Query: 250 P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 +LK ++ F + L A+ T IA R + P LP + + Q Sbjct: 211 DAGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QT 266 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVA 361 ++ L +LA+ +AK +H Q Y+ RL++EL VI M F+ YFL+V Sbjct: 267 PSKDYL---------TKLAESGLAKRFHGQSIPPAYQDRLEYELRVIIEMGFADYFLVVW 317 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A K NI G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R MPD D+D Sbjct: 318 DVMNYAHKVNIMTGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLD 377 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RR E+I+YV +KYG +AQIITFG+ AK A+RDV R + + + K IPN Sbjct: 378 IPDNRRGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPN 437 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540 + L+ + S+ + +AD +R+L + + LEGL RH STHAAGIV+ + PL+ Sbjct: 438 --LFHIDLKTAYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 V + + L TQ +E GL+K DFLGLK L +L + F+ + G D Sbjct: 496 DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPK 554 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ESSG++ L ++P ED++A+ +LYRPGP++NI Sbjct: 555 AIPLDDQPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENID 614 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RKNG+E I P + +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K Sbjct: 615 TFIARKNGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSK 674 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+ +++ A++ Sbjct: 675 KKSSVLAAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYL 734 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP F AA M M+N+ K++ + Q+A+ + ++ P +N FK+ +I + L Sbjct: 735 KVHYPAAFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGL 794 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 +IKG+ I A + PF L D R+D K L ++ AGA D F +R Sbjct: 795 LSIKGMRRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRA 854 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN----SSVRFENE 955 Q L +LD + + + ++ G FS L ++E +S R E E Sbjct: 855 QTLANLDELINSVK------------LAGNDVGLFS---MLAPKTIEAPEMPASERLEAE 899 Query: 956 QRVLGFYFSGHPLDVYKPI---LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 VLG Y SGHP+D Y P+ R + + EE G + + +V ++ +T+ G Sbjct: 900 AEVLGVYLSGHPVDKYAPLKTQYRLVNVSDLEE------GRAVDILLLVRHIKRIRTKTG 953 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + ++ + FP Sbjct: 954 KPMAFIDGQDATGNVSLTIFP 974 >gi|303237320|ref|ZP_07323890.1| DNA polymerase III, alpha subunit [Prevotella disiens FB035-09AN] gi|302482707|gb|EFL45732.1| DNA polymerase III, alpha subunit [Prevotella disiens FB035-09AN] Length = 1238 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 368/1106 (33%), Positives = 557/1106 (50%), Gaps = 101/1106 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-- 68 ++HL VH+ YS+L+G + ++DK + +AITD +F EFS + Q Sbjct: 4 YIHLHVHTHYSILDGQSKVPYLVDKAIKNGMKGMAITDHGVMFGIKEFSDYCASINKQRK 63 Query: 69 --------PIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 PI GC++ + +D +K + + +++L GY+ LI+LVS Sbjct: 64 KNGEEPFKPIFGCEMYVARRRKEDKVKEMHDN-----SGYHLIVLAKNYTGYKNLIKLVS 118 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 R ++ D R L++ EGLI+ T +G + R + A++ + +KK+ Sbjct: 119 RSWV-DGYYYRPRTDREDLEKY-HEGLIVSTACLAGEVPRNIMRGDIEGAKEAVQWYKKV 176 Query: 178 FGDRLYVNLQRHRGYD----RYRESQVVQLAYTHEL---------PLVATNNSLFLSEED 224 FGD Y+ LQRH D RE+ +Q H L + TN+ F +E Sbjct: 177 FGDDFYLELQRHEVKDPTLKANREAFPLQQKVNHVLLQLGKEFGVKCICTNDCHFEDKET 236 Query: 225 YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284 EAHD L+ ++ ++ R R + + K R EM +F DLPE L NT+EI + F Sbjct: 237 AEAHDHLLCLSTQEDLNSPTRMRYSKQEWFKTREEMNEVFQDLPEVLSNTIEILEKVEFY 296 Query: 285 LQVHAPILPRFIEKECDDIQKE--------------------------EENELRNKAVAG 318 + PI+P F E ++E EE E K + G Sbjct: 297 SIDNGPIMPFFPIPENFGTEEEWRKKFTEQQLYDEFTTDEHGENQLSPEEGEAVIKRLGG 356 Query: 319 LE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E +LA K Y D + + FEL+V+ M F GYFLIV DF Sbjct: 357 YEKMYRIKFEADYLAKLAHDGAKKLYGDPIPDDVEKAIIFELHVMKTMGFPGYFLIVQDF 416 Query: 364 IQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 I A+ N+ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF Sbjct: 417 INAARTELNVMVGPGRGSAAGSVVAYCLGITRIDPLKYDLLFERFLNPDRVNLPDIDTDF 476 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 D R +V+++V KYG E A IIT+ ++ K +++DV R +P + LCK IP Sbjct: 477 DDDGRGKVLQWVMEKYGPENCAHIITYSTMATKNSIKDVARVEGLPLDVSNNLCKAIPER 536 Query: 483 PAHPVSL---QAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRP 538 + + AIA R +EA +++ +R ++ ++ LEG R HA G +I P Sbjct: 537 LPDGMKMNLKNAIACTPRLQEAEVSEDDRERNTIKYAKMLEGTVRGTGIHACGFIICRNP 596 Query: 539 LSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592 +S+ VP+ D +PVTQ++ IE GLIK DFLGLKTL+ ++++ + Q Sbjct: 597 ISEWVPVSTATDPDFPDQKVPVTQYDGHVIETTGLIKMDFLGLKTLSEIKEACKVIKQTT 656 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 G VD+ IP DD TY L T+G FQ ES GM++ L + P ED+IA+ +LYRP Sbjct: 657 GDIVDIDNIPIDDELTYQLYQKGQTIGTFQFESPGMQKYLRELHPTVFEDLIAMNALYRP 716 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+D I + RK+ + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D Sbjct: 717 GPMDYIPDFIKRKHDPSLVTYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDA 776 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LR+AMGKK K +D+ K +F+ +NG I I+ KFA Y FNKSHA Y+ + Sbjct: 777 LRKAMGKKKKAIVDQMKPKFLKQGQENGHDPKILEKIWTDWEKFASYAFNKSHATCYSWV 836 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831 +YQTA++K HYP EF+AA MT + +I K ++ + I + P VN + F V Sbjct: 837 AYQTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSLKISTLGPDVNESMMGFGVNK 896 Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I + L+AIKG+GT A I+ E + P+ S+ DF R+D +NR+ ESL ++G Sbjct: 897 KGEIRFGLSAIKGMGTGAAIAIVKEREKNGPYKSIYDFAERIDLSNVNRKAFESLAYSGG 956 Query: 891 LDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 D F R LD + +YAQ ++ + + ++F + + K Sbjct: 957 FDSFELQREDYFSVTSKGVMFLDALVRYAQLYQQEKASMQNSLFGGDDEVEIARPVAAKN 1016 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-----SVATI-RGNNIRL 997 S + E+ ++G Y S HPLD Y IL + EE +A + + I Sbjct: 1017 ERWPSIEKLNKERELVGIYLSAHPLDEYSVILNHLCNTHTEEIGRGADLAELSKREEISF 1076 Query: 998 AAMVVSKQQKKTRK-GSRIGWVTFSE 1022 ++ + ++ ++K G G+VT + Sbjct: 1077 GGIITAVNERFSQKTGKPFGFVTIED 1102 >gi|260101642|ref|ZP_05751879.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus helveticus DSM 20075] gi|260084543|gb|EEW68663.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus helveticus DSM 20075] Length = 1041 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 341/1028 (33%), Positives = 551/1028 (53%), Gaps = 52/1028 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ ++++++ A+ + D N + + F + A AGI+P++G Sbjct: 12 LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 71 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132 QL ++ G ++ T GY L+ L S + +L D G+ + + Sbjct: 72 QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 121 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + + F + Q+ + K+L D LY+ + + Sbjct: 122 LKDLSKYLADLLLIVPANTKSEL-LSLFETNKQLGSDLIRDLKELTSD-LYLGVYANPSM 179 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251 Y + V L+ +LPL+AT +S +L+ D L A+A + Q P + Sbjct: 180 QNYIDY-VRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKI-QDALPLAKQEG 237 Query: 252 -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HYL +++ + DL +A+ NT ++A +C+ + P+LP++ +K+ E Sbjct: 238 SHYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----VTSE 293 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L A GL+ R Q I +Y++RL++EL VI +M F YFLIV D I + Sbjct: 294 EYLHYLAQTGLQQRFGQNKIPA-----EYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 348 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS GS+ +Y+L IT++DP+ ++LLFERFLNP R MPD D+D +RD Sbjct: 349 RVQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRD 408 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + ++ + IP ++ Sbjct: 409 TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWVDAIPYSKGK-IT 467 Query: 489 LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ SR E RL A P L + + LEGL RH S HAAG+VI D ++ + + Sbjct: 468 LKEAYQQSR--ELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGL 525 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 +PVTQ K++E GL+K DFLGL+ LT+L L+ + Q+G+K+D + IP +D Sbjct: 526 QAGPLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLND 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T +FQ ES G+RQ L + PD ED++A+ +LYRPGP+ NI + RK Sbjct: 585 AQTLQLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ + Sbjct: 645 NGQEAVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVI 704 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +++K +FI+G K G +K +A +++ + +FA+YGFN+SHA AY I+Y A++K HYP Sbjct: 705 EQEKGKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPA 764 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F A + K + + A++ NI+I+PP +N +++ + + +I L AIKG+ Sbjct: 765 AFYTAMLNSAAG--AKAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGL 822 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 AR I A KP+ SL DF R+D K L +++L+ AGA D +R +LL + Sbjct: 823 RVDFAREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNC 880 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D I Q +N + + G K E E +++ E++VLGF + Sbjct: 881 DEIIANVQLTGQNIS------LSEILGNAPLKPADEPTGAEKAAM----EEKVLGFSTTT 930 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PL + +K + + G + ++ +Q +T+ G + + +F++ + Sbjct: 931 SPLIAVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSG 987 Query: 1026 EYEANFFP 1033 E E FP Sbjct: 988 EQEVVIFP 995 >gi|302561148|ref|ZP_07313490.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus Tu4000] gi|302478766|gb|EFL41859.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus Tu4000] Length = 1179 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 357/1069 (33%), Positives = 561/1069 (52%), Gaps = 58/1069 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ D IA++D NL A +F A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAQKAGVT 63 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117 PIIG + + + + N + G+ P + + + G L L S Sbjct: 64 PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFRLSS 122 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Y ++ R+ + + +EG++ TG SG + A K ++ + Sbjct: 123 DAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQDI 181 Query: 178 FG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 FG DR ++ L H G D R R+ ++++ +P + TN+S + + AHD L+ Sbjct: 182 FGKDRYFLELMDH-GIDIEHRVRDG-LLEIGRKLGIPPLVTNDSHYTYAHEAVAHDALLC 239 Query: 234 VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR + +YLK+ EM +I D +A + R + ++ Sbjct: 240 IQTGKNLSDPDRFKFDGTGYYLKSTDEMYAI--DSSDAWQQGCANTRLIAEMVDTTGMFE 297 Query: 293 PRFIEKECDDIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + D Q E + + + G+E R G +D +++ D+E++VI +M Sbjct: 298 KRDLMPKFDIPQGYTEVSWFKEEVRRGMERRFPGGV------PEDRQKQADYEMDVIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPNDP-AHPVSLQAIADDSRFREARLA--------DPSVDRLLEISQKLEGLY 522 DRL K +P D + L I D S R + +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + A +GV +DL +P DD +T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVKANKGVDLDLLSLPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP +D+ Y RKN ++I IH ++ L+E T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMDSHTNYALRKNKLQEITPIHKELEEPLREVLDVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE+ K F +GA KNG S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDEAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K ++P E++A +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAGLLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L+A++ VGT I++ A + S D+ +VD Sbjct: 832 VLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRRAKGKYTSFPDYLDKVD 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927 + N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 892 AVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEA 951 Query: 928 -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 + E G F +T + + + E+ +LG Y S HPL + +L G + Sbjct: 952 ESSEPG-FGLDVTFTDDEWDKTYL-LAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQL 1009 Query: 987 VATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + ++ Q+K T++G+ T + A E FFP Sbjct: 1010 TGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058 >gi|326440734|ref|ZP_08215468.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC 27064] Length = 1146 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 352/1043 (33%), Positives = 551/1043 (52%), Gaps = 76/1043 (7%) Query: 44 IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103 IA+TD NL A +F +A AGI PIIG + + + N+ K + V Sbjct: 6 IAMTDHGNLHGAYDFFHQAKGAGITPIIGIEAYVAPESR---RNKRKIQWGQPHQKRDDV 62 Query: 104 STAEGY-QRLIELVSRMYLLDQGK-QSVRICLSWLQEI----------GTEGLIMLTGGS 151 S + GY + I +R L + + S WLQ+ +EGLI TG Sbjct: 63 SGSGGYTHKTIWAANRTGLHNLFRLSSDAYAEGWLQKWPRMDKETIAQWSEGLIASTGCP 122 Query: 152 SGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHEL 209 SG + A K ++ +FG R ++ L H +R ++++ ++ Sbjct: 123 SGELQTRLRLGQFDEALKAASEYQDIFGKGRYFLELMDHGIEIERRVRDGLLEIGKKLDI 182 Query: 210 PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD-- 266 P + TN+S + + + AHD L+ + +S DR R +YLK+ +M +I S Sbjct: 183 PPLVTNDSHYTFDHEAGAHDALLCIQTGKNLSDPDRFRFDGTGYYLKSTDQMYAIDSSDA 242 Query: 267 LPEALENTVEIARRCSFILQVHAP-ILPRF-IEKECDDIQKEEENELRNKAVAGLEVRLA 324 E NT+ +A + A ++P+F I ++ +E EVR Sbjct: 243 WQEGCRNTLLVAEQIDTSGMFEAKNLMPKFEIPAGFTEVTWFQE-----------EVRTG 291 Query: 325 QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 G +D +++ ++E++VI M F GYFL+VADFI WAKKN I VGPGRGS AGS Sbjct: 292 MARRYPGGVPEDRQRQAEYEMDVIVSMGFPGYFLVVADFIMWAKKNGIAVGPGRGSAAGS 351 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 + AYA+ ITD+DP+ L+FERFLNP+R+SMPD DIDF + RR EVIRYV KYG ++VA Sbjct: 352 IVAYAMGITDLDPIEHGLIFERFLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVA 411 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQA 491 I T+G+++AK A++D R L PY+ DRL K +P DPAHP +A Sbjct: 412 MIGTYGTIKAKNAIKDSARVLGYPYAMGDRLTKAMPADVLGKGIPLSGILDPAHPRYSEA 471 Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 R +P V ++++ ++ +EGL R HAAG+++ P++ P++ Sbjct: 472 ----GEIRGMYENEPDVKKVIDTARGVEGLVRQMGVHAAGVIMSSEPITDHAPVWVRHSD 527 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYH 610 + +TQ++ E GL+K DFLGL+ LT++ ++ + A +G+++++ IP DD TY Sbjct: 528 GVTITQWDYPSCESLGLLKMDFLGLRNLTIMDDAVKMVKANKGIELEMLSIPLDDPTTYE 587 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGK 668 LL TLG+FQ + MR L M+PD EDI A+ +LYRPGP +++ Y RKN + Sbjct: 588 LLCRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNKQ 647 Query: 669 EKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++I IHP ++ LKE T G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK EE Sbjct: 648 QEITPIHPELEEPLKEVLDVTYGLIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEE 707 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + K F +GA KNG S ++++L FA Y FNK+H++AY +++Y TA++K ++P Sbjct: 708 LAKNFTIFQAGARKNGYSDEAVQALWDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANHP 767 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843 E++AA +T D+ +K + + R+ I+++PP+VN +F GD+ I + L+A++ Sbjct: 768 AEYMAALLTSVKDDKDKSAVYLNECRRMGIKVLPPNVNESQSNFAAQGDDVILFGLSAVR 827 Query: 844 GVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VGT I+ K + S DF +V+ N+R +ESL+ AGA D G++R L+ Sbjct: 828 NVGTNVVESIIRCRKSKGKYSSFPDFLDKVEVVVCNKRTVESLIKAGAFDELGHTRKGLV 887 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQ 956 + + V++ ++F +D+ VE S V +E E+ Sbjct: 888 AHHEPMIDNVVAVKRKEAEGQFDLFGGMGDDSADEPGF-GLDVEFSDVEWEKSYLLAQER 946 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN------IRLAAMVVSKQQKKTR 1010 +LG Y S HPL + +L + S++ + G + + ++ Q+K T+ Sbjct: 947 EMLGLYVSDHPLFGIEHVLSDKS----DASISQLTGGEHADGAVVTIGGIISGLQRKMTK 1002 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 +G+ T + A E FFP Sbjct: 1003 QGNAWAIATVEDLAGSIECMFFP 1025 >gi|297562140|ref|YP_003681114.1| DNA polymerase III subunit alpha [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846588|gb|ADH68608.1| DNA polymerase III, alpha subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 1186 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 355/1083 (32%), Positives = 566/1083 (52%), Gaps = 81/1083 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YS+L+GA L + + A PA+A+TD N+F A EF Q++ G+ P Sbjct: 4 SFAHLHVHTEYSMLDGAAKLKPLFKEAARLGMPAVAMTDHGNMFGAYEFYQQSKGTGVTP 63 Query: 70 IIGCQLDIDMQDNL--KMTNQGKTPFPTVPS---------------IVLLVSTAEGYQRL 112 IIG + + + K G++ S + +L +G + L Sbjct: 64 IIGIEAYVAPESRFHKKRVFWGRSSGSDDASAEGGKDISGGGRYLHMTMLAQNEKGLRNL 123 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 + S + ++ R+ L + E +EG+I+ TG SG + + A Sbjct: 124 FRM-SSLASMEGYYMKPRMDLELMSEY-SEGIIVSTGCPSGGVQTRLRLGQEKEAVAYAA 181 Query: 173 TFKKLFG-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + +FG + +++ L H G +E + ++++ ++P + TN+S ++ E AHD Sbjct: 182 GLQDIFGKENVFLELMDH-GVPIEKEVRDGLLRVGRELDIPPLVTNDSHYVYESQASAHD 240 Query: 230 VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSI--FSDLPEALENTVEIARRCSF--- 283 L+AV + R R +YLK+ EM I F + + NT+ +A R Sbjct: 241 ALLAVGVGKNLDDPTRFRFNGSGYYLKSAEEMRGILNFEEWEQGCRNTLLVAERIDPGAY 300 Query: 284 -ILQVHAPILPRFI----EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 + H ++P F E + + KE E L + G+ G I R Sbjct: 301 DAVFAHRDLMPVFPVPEGETQASWLAKEVERLLPTRYPDGI-----NGEI---------R 346 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 QR+DFEL +I M F YFL+VAD Q+A+KN I +GPGRGS AGS+ AY L ITD+DPL Sbjct: 347 QRVDFELGIINEMGFPAYFLVVADICQYARKNGIALGPGRGSAAGSMIAYVLGITDLDPL 406 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++MPD D+DF + RR E+I YV YG ERVAQI+TFG+++AKAA+ Sbjct: 407 EHGLLFERFLNPERVTMPDVDLDFDERRRGEMIEYVTRLYGAERVAQILTFGTIKAKAAV 466 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVD 509 +D R L MPYS D++ K P + L+A+ + R D V Sbjct: 467 KDSTRILGMPYSVGDQITKAFPAAVGGKEIPLEAVTNTEHERYGETTELRNLIDNDAQVA 526 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +++E ++ +EGL R HAAG+++ PL ++P+++ +T F E GL+ Sbjct: 527 KVMETARGIEGLTRGTGVHAAGVILSKEPLLDVIPLHKRDTDGAIITGFPYPQCEDMGLL 586 Query: 570 KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ LT++ ++ + + G+ +DL +P DD +TY LL+ TLG+FQL+ M Sbjct: 587 KMDFLGLRNLTIMDDAVKSIKEAEGIDIDLGKLPLDDRKTYQLLSRGDTLGVFQLDGGAM 646 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPML 682 R L+ M+P DI A++SLYRPGP+ + Y +R NG++++ IHP ++P+L Sbjct: 647 RNLLKRMEPKKFGDIAAVLSLYRPGPMAANAHNDYADRSNGRQEVTPIHPELKDALEPIL 706 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 ET +++YQEQ+M IAQ L+GY+L AD++RRAMGKK KE +++++ +F GA G S Sbjct: 707 GETFHLLVYQEQIMAIAQQLAGYTLGGADLMRRAMGKKKKEALEEEEAKFFPGAEARGFS 766 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 K +++++ FA Y FNKSHAA YA++SY TA++K ++P ++AA +T D+ +K+ Sbjct: 767 KEATQALWDVMLPFAGYAFNKSHAAGYALVSYWTAYLKANHPAAYMAALLTSVSDDKDKM 826 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861 + + R I+++PP VN + F I + + A++ VG I+ +K Sbjct: 827 AVYLAECRTQGIKVLPPDVNESGLRFTPVGKDIRFGMGAVRNVGANVVNSIIRTRTEKGK 886 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F S DF S+++ N+RV+ESL+ AG D G R +L + + +K + Sbjct: 887 FSSFTDFLSKIELAACNKRVIESLIKAGGFDSLGQPRRELYRHHETAVDGMISSKKQEAH 946 Query: 922 KHENIFAHEKGTFSDKITLE-KFSVE--NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 ++F S I L + E + + E+ +LG Y S HPL + +L Sbjct: 947 GQFDLFGGGDDGDSTPIGLNINWGDEEWDRKTKLAFEREMLGLYVSSHPLAGAERVL--- 1003 Query: 979 GIKGYEESVATI--------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 + + S+A I RG +R++ ++ ++ + G++ T + E Sbjct: 1004 -ARSRDTSIAQIVAGEMARERG-EVRISGLISKVDKRTNKAGNQWAIATVEDLDASMEVL 1061 Query: 1031 FFP 1033 FFP Sbjct: 1062 FFP 1064 >gi|29832685|ref|NP_827319.1| DNA polymerase III subunit alpha [Streptomyces avermitilis MA-4680] gi|29609805|dbj|BAC73854.1| putative DNA polymerase III alpha subunit [Streptomyces avermitilis MA-4680] Length = 1179 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 361/1069 (33%), Positives = 559/1069 (52%), Gaps = 58/1069 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAKKAGVT 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY-QRLIELVSRMYLLDQGK- 126 PIIG + + + N+ K + VS + GY + I +R L + K Sbjct: 64 PIIGIEAYVAPESR---RNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFKL 120 Query: 127 QSVRICLSWLQEI----------GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S WLQ+ +EGLI TG SG + A K +++ Sbjct: 121 SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGELQTRLRLGQFDEALKSAAEYQE 180 Query: 177 LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ + Sbjct: 181 IFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYANEATAHDALLCI 240 Query: 235 AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP- 290 +S DR R +YLK+ EM +I S E NT+ +A + A Sbjct: 241 QTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTLLVAEQIDTSGMFEAKN 300 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 ++P+F E + E+R G+E R G D +++ ++E++VI + Sbjct: 301 LMPKFDIPEGFTEVTWFQEEVRR----GMERRFPGGV------PDDRQKQAEYEMDVIIQ 350 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYFL+VADFI WAKK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP Sbjct: 351 MGFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNP 410 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 411 ERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYA 470 Query: 471 QVDRLCKLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLEGL 521 DRL K +P D + L I D S R+ EA +P V ++++ ++ +EGL Sbjct: 471 MGDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGL 530 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT+ Sbjct: 531 VRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTI 590 Query: 582 LQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + + +G+ +DL +P DD +T+ LL TLG+FQ + MR L M+PD Sbjct: 591 MDDAVKMVKSNKGIDLDLLSLPLDDPKTFELLQRGETLGVFQFDGGPMRSLLRLMKPDNF 650 Query: 641 EDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQ 694 EDI A+ +LYRPGP +D+ Y RKNG ++I IH ++ L+E T G+I+YQEQ Sbjct: 651 EDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAVTYGLIVYQEQ 710 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V + AQ+++GYSL EAD+LRR MGKK +E+ K F GA K G S ++++L Sbjct: 711 VQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQEGAQKKGYSDEAIQALWDVLV 770 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNK+H+AAY ++SY TA++K +YP E++A +T D+ +K + + R+ I Sbjct: 771 PFAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRMGI 830 Query: 815 QIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV 872 +++PP VN +F GD+ I + L+A++ VGT I+++ A + S D+ +V Sbjct: 831 KVLPPDVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKSRKAKGKYASFPDYLDKV 890 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---- 928 ++ N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 891 EAVACNKRTTESLIKAGAFDTMGHTRKGLTAQFEPMIDNVVQVKRKEAEGQFDLFGGMGE 950 Query: 929 --HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 ++ F + E + + E+ +LG Y S HPL + +L G + Sbjct: 951 EESDEPGFGLDVVFTDDEWEKTYL-LAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQL 1009 Query: 987 VAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1010 TGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058 >gi|18251957|gb|AAL66178.1|AF459434_1 DNA polymerase III alpha subunit [Saccharomonospora phage PIS 136] Length = 1206 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 364/1082 (33%), Positives = 562/1082 (51%), Gaps = 84/1082 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ +S+L+GA + + D+ PA+A+TD N+F A EF Q++ GI+P Sbjct: 68 SFVHLHVHTEFSMLDGAAKMKPLFDEATRLGMPAVAMTDHGNMFGAYEFFQQSKKTGIKP 127 Query: 70 IIGCQLDIDMQDNLKMT--------NQGKTPFP---------TVPSIVLLVSTAEGYQRL 112 IIG + + + +G F + +L A G + L Sbjct: 128 IIGIEAYVAPESRHHKKPVFWGHHGQRGADEFGEGGDVSGAGAYTHMTMLARNATGLRNL 187 Query: 113 IEL-VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 +L SR + K R+ + E EG+I TG SG + + A + Sbjct: 188 FKLSYSRAWRATTAKP--RMDRDLIAE-HAEGIIATTGCPSGEVQTRLRLGQPKEALQAA 244 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 F+ +FG + ++ L H +R ++ +A L VATN+S +++++ +AH Sbjct: 245 SDFRDIFGPENFFLELMDHGLPIERSVREGLLDIAKQLGLRPVATNDSHYVTQDQADAHS 304 Query: 230 VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV 287 L+ V ++ +R + D +YLK+ +EM + + +++P A +NT+ IA V Sbjct: 305 ALLCVQSGKTLNDPNRFKFDGDGYYLKSAAEMRAYWDTEVPGAADNTLLIASMVESYDDV 364 Query: 288 HAP--------ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 AP I+P K +E LR + + R G Q YR Sbjct: 365 FAPTNRMPQAKIVP----------GKTDEQVLREEIEQFIPTRFPDGM------PQKYRD 408 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 +L++EL VI ++ YFL+V D ++WAK N I VGPGRGS AG++ +Y L I DIDPL+ Sbjct: 409 QLEWELEVIIGKGYASYFLVVGDLVRWAKNNGIRVGPGRGSAAGALLSYILHIIDIDPLK 468 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 L+FERFLNP+R S PD DIDF + RRDEVI Y +NKYG E A++IT+G+++ KAA + Sbjct: 469 HGLIFERFLNPERESPPDIDIDFDERRRDEVIEYAKNKYGSEYFAKVITYGTIKTKAAFK 528 Query: 460 DVGRAL--QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSV 508 D R Q +S DR K +P A + L I D R A A DP V Sbjct: 529 DAARVHLGQAGFSVADRFSKALPPPVAAKDIPLSGIMDPEHERYAEAAEVRSLIESDPEV 588 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-VTQFNMKWIEKAG 567 ++ + ++ LEGL R+A HA +I PL ++P+++ R D +T ++ E G Sbjct: 589 SKIFDTARGLEGLIRNAGVHACAHIISREPLLDVLPLWQ--REDGAIITGWDGPQCEGVG 646 Query: 568 LIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K D LGL +T + + + A GV++D +P DD T+ +L +LG+FQLE Sbjct: 647 LLKIDILGLVNMTTIDDTARMVKANHGVEIDPLALPMDDATTFDMLGRGESLGVFQLEGG 706 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM-- 681 GM+ L+ MQP EDI+A V+LYRPGP +D + Y +RKNG++K+ IHP L +P+ Sbjct: 707 GMQALLKRMQPTTFEDIVACVALYRPGPMDVDAHLHYADRKNGRQKVSPIHPELEEPLAE 766 Query: 682 -LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 L ET G+I+YQEQ+MQIAQ ++ Y+L +AD LRRAMGKK KE ++K+ F G NG Sbjct: 767 ILSETYGLIVYQEQIMQIAQKVANYTLGQADTLRRAMGKKKKEVLEKEFAVFEEGMKANG 826 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 S +++ + FA Y FNKSHAAAY +I+Y TA++K +YP E++AA +T D + Sbjct: 827 FSGEAIKALWDTILPFAGYAFNKSHAAAYGLITYWTAYLKANYPAEYMAALLTANADKKD 886 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASAD 859 K + + R+ ++++PP VN V F D I + L AI+ VG A I+ + + Sbjct: 887 KSAVYLAECRRMGLKVLPPDVNDSAVQFSATDGNIRFGLGAIRNVGAGVAETIIRDREKE 946 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 F DF ++ ++RV+ESL+ AGA D G++R L ++ + ++K + Sbjct: 947 GRFTGFADFLTKASPSVCSKRVVESLIKAGAFDDLGHTRKALFIVHEDAVEVMSALKKQQ 1006 Query: 920 TNKHENIFAHEKGTFSDKITLE--KFSVEN--SSVRFENEQRVLGFYFSGHPLDVYKPIL 975 ++F + L K+ E + E+ +LG Y + HPLD + +L Sbjct: 1007 AAGQFDLFGAAPQPMEESSPLAHLKYDPEEWPPKILLSFEREMLGLYVTAHPLDGAEHLL 1066 Query: 976 RKMGIKGYEESVATI-----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 RK K +AT+ + I ++ +V S +++ +KG T + E Sbjct: 1067 RKWAPK----PIATLVHDAPKEGEITISGLVTSVERRLNKKGEPWAICTIEDLDASIEVL 1122 Query: 1031 FF 1032 FF Sbjct: 1123 FF 1124 >gi|297153520|gb|ADI03232.1| DNA polymerase III subunit alpha [Streptomyces bingchenggensis BCW-1] Length = 1233 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 358/1090 (32%), Positives = 572/1090 (52%), Gaps = 84/1090 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQ 68 SFVHL H+ YS+L+GA L + ++A PAIA++D N+F A EF+Q A GI+ Sbjct: 39 SFVHLHNHTEYSMLDGAQKLKPMFGEVARQGMPAIAMSDHGNMFGAYEFAQVAKGFEGIK 98 Query: 69 PIIGCQLDI-----------------------DMQDNLKMTNQGKTPFPTVPSIVLLVST 105 PIIG + + D + + ++ G+ + + Sbjct: 99 PIIGIEAYVAPSSRFVRKQEFWGPGGRRATSADGEGSKDVSGGGR-----FTHLTMWARN 153 Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165 ++G + L L ++ Q L +G+I TG SG + N Sbjct: 154 SQGLRNLFWLSTQASYEGQFPAGKPRMDRELIADRPDGIIATTGCPSGEVQTRLRLNQYA 213 Query: 166 VAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSE 222 A+ ++++FG + ++ L H G D RE + +++LA +PL+ATN++ +++E Sbjct: 214 EAKAAAAAYQEIFGRENYFLELMDH-GLDIEREVREGLLRLATELNIPLLATNDAHYVTE 272 Query: 223 EDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVEIA 278 + +AHD L+ + V KD P +YLK +EM S+FS+LPEA +NT+ IA Sbjct: 273 DQADAHDSLLCIG---VGKNKDDPGRFRFNGSGYYLKTAAEMRSLFSELPEACDNTLLIA 329 Query: 279 RRCSFILQV--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336 R +V + +PRF + Q E+ LR + + GL +R Q Sbjct: 330 ERIESYDEVFDYVDEMPRFPGVPEGETQ---ESWLRKEVLEGLAMRYGAPV------PQH 380 Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 R + E++VI M FS YFL+VAD + A++N IP+GPGRGS GS+ AYA IT++ Sbjct: 381 ILDRFETEMSVIGPMGFSSYFLVVADICRHARENKIPLGPGRGSCTGSIVAYATRITELC 440 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 PL LLFERFLNP+R++ PD D+DF +RD ++RYV KYG E A + TFG ++AK Sbjct: 441 PLEHGLLFERFLNPERINPPDVDLDFDDRQRDRMVRYVTEKYGEEYTAMVNTFGKIKAKN 500 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--RFREA----RLADPSVD 509 A++D R L PYS +R+ K +P D L A+ D S R+ EA ++ D D Sbjct: 501 AIKDSSRILGYPYSHGERITKALPPDQNGKSAPLAAVFDSSHERYGEAGEIRQMYDNEQD 560 Query: 510 --RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 R+++ ++ +EGL R HAA +++ L+ +P++ + +T F+ E G Sbjct: 561 VKRVIDTARGVEGLTRGTGVHAAAVILSKTKLTDRIPLHMRASDGVKITGFDYPSCEAMG 620 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV----------DLSLIPFDDHETYHLLTTKG 616 LIK DFLGL+ L ++ ++++ + + RG + +IP DD TY LL Sbjct: 621 LIKMDFLGLRNLGVIDQAIENIRENRGTSLATVDPLDGDPSTVVIPLDDATTYRLLAEGN 680 Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSI 674 T G+FQL+ GMR L+ M+P EDI A+ +LYRPGP+ + Y +RK G+++I I Sbjct: 681 TFGVFQLDGGGMRVLLKQMEPTRFEDIAAVNALYRPGPMAANAHTNYAHRKTGRQEITPI 740 Query: 675 HP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 HP ++P+L T +++YQEQ+M IA+ L+GY+L AD+LRRAMGKK E + + + Sbjct: 741 HPELRDALEPILGNTFHLLVYQEQIMAIARELAGYTLGGADLLRRAMGKKKPEVLAAEWD 800 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 +F SG NG + +++++ F+ Y FNKSH A Y ++SY TA++K +YP E++AA Sbjct: 801 KFHSGMRGNGYGEEAIKALWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPAEYMAA 860 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850 +T D+ +K + DAR+ ++++ P VN +F + + + L +++ VG Sbjct: 861 LLTSVGDDKDKAAIYLADARKNGVRVLQPDVNESVAEFTAVGDDVRFGLRSVRNVGDNVI 920 Query: 851 RHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 +++A K F S DF +VD LN+R ESL+ AG D G+SR L ++ Sbjct: 921 EAVIDARRRKGKFSSFADFLDKVDLPALNKRAAESLIKAGTFDSLGHSRKGLTAIHEDAI 980 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVR----FENEQRVLGFYFS 964 V+K + +++FA G S + F V+++ E+ +LG Y S Sbjct: 981 DAIIPVKKAASFGQDDLFADLGGEGSSEPAFGLDFPVDDTEWPRRQLLATEREMLGLYVS 1040 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD + IL + E +A+ R +++L+ ++ Q K T++G+ V ++ Sbjct: 1041 AHPLDGAEHILSRARDCSIAELLASGRTTGDVQLSGLITGIQLKMTKQGNAWAIVNLADR 1100 Query: 1024 AKEYEANFFP 1033 E FFP Sbjct: 1101 DAGIEVLFFP 1110 >gi|289642708|ref|ZP_06474847.1| DNA polymerase III, alpha subunit [Frankia symbiont of Datisca glomerata] gi|289507451|gb|EFD28411.1| DNA polymerase III, alpha subunit [Frankia symbiont of Datisca glomerata] Length = 1187 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 346/1077 (32%), Positives = 571/1077 (53%), Gaps = 60/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL VH+ YS+L+GA + + + A PA+ +TD N+F + EF Q A Sbjct: 1 MSKGDSFVHLHVHTEYSMLDGAAKVGLLFAEAARLGMPAVGMTDHGNMFGSYEFHQAAKK 60 Query: 65 AGIQPIIGCQLDI--DMQDNLKMTNQGK---------------TPFPTVPSIVLLVSTAE 107 AG++PIIG + + + + + K G + + +L + ++ Sbjct: 61 AGVKPIIGIEAYVAPEARHHKKPVFWGDGGQRDADPDGEGGDVSGGGAYTHMTMLAANSK 120 Query: 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167 G + L L S + LD + R+ + E EG+I TG SG + N A Sbjct: 121 GLRNLFRL-SSIASLDGYYRKPRMDQELIAE-HAEGIIATTGCPSGVVQTRLRLNQFDRA 178 Query: 168 EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225 + T++ +FG + ++ L H +R ++ +A +L +ATN+S +++++ Sbjct: 179 VEAAATYRDIFGPENYFLELMDHGLAIERKVRDGLLDIARRLDLRPLATNDSHYVTKDQA 238 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSF 283 ++H L+ V + R R D +YLK+ EM ++ +P A ++++ IA R Sbjct: 239 DSHSALLCVGTGKRLDDPKRFRFDGDGYYLKSPEEMRDMWDGQVPGACDSSLLIAERVQP 298 Query: 284 ILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 V A + +PRF E +D + + LR + G+E R Q+ R+ Sbjct: 299 YDDVFAYVDRMPRFPVPEGED----QLSWLRKEVARGVEHRFGANP------PQEVLDRV 348 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 ++E+ VIA M F YFL+VAD ++A++ I VGPGRGS GS+ +Y L +T++DP+ Sbjct: 349 EYEIGVIANMGFPAYFLVVADICRYAREKGIRVGPGRGSATGSMVSYVLGVTELDPIEHR 408 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 L+FERFLNP+R++ PD D+DF + RR ++IRYV +YG +RV QI+TFG+++AKAA++D Sbjct: 409 LIFERFLNPERITPPDIDLDFDERRRGDMIRYVTERYGEDRVCQILTFGTIKAKAAIKDS 468 Query: 462 GRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSRFREARLA--------DPSVDRLL 512 R L PY+ D++ K +P D + L I D + R + A D V +++ Sbjct: 469 CRVLGYPYALGDKITKAMPPDVFGKGIPLSGILDPAHERYSEAAEVRGLYESDQDVRKIV 528 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + ++ LEGL R HAAG+++ PL ++P++R +T F E GL+K D Sbjct: 529 DTARGLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDADGAIITGFPFPQCEDMGLLKMD 588 Query: 573 FLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGL+ LT++ + ++ RG+ +DL +P D T+ L+ TLG+FQL+ MR Sbjct: 589 FLGLRNLTVIDDAIINVRKNRGIDIDLQKLPLADTPTFQLMARGDTLGVFQLDGGPMRSL 648 Query: 632 LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKET 685 L M P EDI A+++LYRPGP+ ++ + Y +RKNG++ + IH ++ +L ET Sbjct: 649 LRLMAPTKFEDIAAVLALYRPGPMAANSHIEYADRKNGRKPVTPIHTELKDRLEDILGET 708 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 +++YQEQVM IA+ L+GY+L AD+LRRAMGKK KE +D F++G ++N S Sbjct: 709 YHLVVYQEQVMTIARELAGYTLGRADLLRRAMGKKKKEVLDANHAEFMAGMAENSYSTEA 768 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A ++++L F+ YGFNKSH A Y V+S+ TA++K ++P E++AA +T D+ +K+ + Sbjct: 769 AQALWDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANFPAEYMAALLTSVGDDKDKMAVY 828 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDS 864 + R+ I+++PP VN + F D+ I + L AI+ VG I + K + S Sbjct: 829 LAECRKMGIRVLPPDVNESTLYFTPVDDDIRFGLGAIRNVGANVVASIAASRERKGDYAS 888 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 DF +V+ N+RV++SL+ AGA D G++R L Q ++ ++N Sbjct: 889 FPDFLEKVEIAVCNKRVVDSLIKAGAFDSLGHNRRALSQVHESAIDAVIGTKRNEAFGQF 948 Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRF------ENEQRVLGFYFSGHPLDVYKPILRKM 978 ++F D+ ++ S+ + E+ +LG Y S HPL+ + IL + Sbjct: 949 DLFGGGGDDEPDESMKIGLGLDLSATEWPRSELLAQEREMLGLYVSSHPLEGTQRILDRN 1008 Query: 979 GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW--VTFSEPAKEYEANFFP 1033 + + + R A V++K ++ K + W VT + E FFP Sbjct: 1009 RDTRIIDLLDSGRSEGEVQIAGVIAKIDRRVNKNNGNLWAIVTVEDLDASVEVLFFP 1065 >gi|269216173|ref|ZP_06160027.1| DNA polymerase III, alpha subunit [Slackia exigua ATCC 700122] gi|269130432|gb|EEZ61510.1| DNA polymerase III, alpha subunit [Slackia exigua ATCC 700122] Length = 1194 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 354/1059 (33%), Positives = 569/1059 (53%), Gaps = 54/1059 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65 FVHL H+ YS+L+GA + +++ + A PA+AITD + E ACAA Sbjct: 25 FVHLHNHTEYSMLDGATHVKDMVRRAADLDMPAVAITDHGVMCGVPELCD-ACAAVERET 83 Query: 66 --GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 ++PI GC+ I ++ ++ + ++P + +++L +EGY L+ LVS ++ D Sbjct: 84 GKKVKPIYGCE--IYFTEDPEVGTKKRSP---LYHMIMLAKNSEGYHNLLHLVSESHM-D 137 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDR 181 R L +++ +G++ + +G I R A + TFK +F GD Sbjct: 138 NYYYKPRTTLDMIKK-HAKGIVATSACIAGIIPRRLRERDVAGAREWAQTFKDIFEPGD- 195 Query: 182 LYVNLQ-----RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 Y+ LQ G+ ++ Q+ LA+ L +ATN+ +L+ ED +A D+++ + Sbjct: 196 FYIELQDQGISTEEGFSQHELNVQLSNLAHDLGLETIATNDFHYLTREDAKAQDIMLCIG 255 Query: 236 HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 + ++R R D Y+K EM D PEA +NTV++A +CS L+ + ILPR Sbjct: 256 TGSNYDDENRMRFANDEFYMKTEEEMREALRDFPEACDNTVKVAEKCSVELERDS-ILPR 314 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQ----DYRQRLDFELNVIA 349 F E EE R + GL R G I + D +R ++E VI Sbjct: 315 FPLPE----GYTEEMLFREECEKGLIHRYGNNGEITTMDELRAARPDVVERYEYEAGVII 370 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 + F YFLIV ++I+WAK N I VGPGRGS AG++ YA+ ITD++PL LLFERFL+ Sbjct: 371 QQGFPAYFLIVQEYIRWAKDNGIGVGPGRGSAAGAICTYAMGITDLEPLDNGLLFERFLS 430 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+ MPD D+DF R +VI +V++ YG + +A +ITFG LQAK A+RD R L PY Sbjct: 431 PERVEMPDIDVDFDDQHRQDVIDHVRDFYGADHIAGVITFGKLQAKNAVRDAARVLGHPY 490 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 D++CK I ++ + A+ ++ ++ D +++ ++ +EG R HA Sbjct: 491 GVGDKICKTIGDELGITLD-DALENNVDLKKMYDDDADTRDIIDAARSIEGNIRGEGVHA 549 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DF 588 +I PL VP+ RD + +TQ++ + + GL+K DFLGL+TL +L ++ + Sbjct: 550 CATIICRDPLVDHVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACKNV 609 Query: 589 LAQRGVKVDLSLIPFDDHETYHLLTTK---GTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 A+ G+++ IP +D E + L+ + G G+FQ+E + + P DI+A Sbjct: 610 KARHGLEIRPDEIPIEDAEAFRLMRGEMRWGMDGLFQVEGALYVSLFSRLPPRRFSDIVA 669 Query: 646 LVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 ++L RPGP+++ +V Y NG +I + P+L+ET G ++YQEQ+MQI+ +S Sbjct: 670 SIALNRPGPLESGMVDDYVKVANGTTEIHYYDDRLRPILEETYGTMVYQEQIMQISMAMS 729 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 G+S +AD LR+AMGKK + M + + + GA +NG S IA I+E KFA Y FNK Sbjct: 730 GFSAGKADRLRKAMGKKKLDIMRQLQADWNEGAVENGYSLEIAKQIWEDAEKFAKYAFNK 789 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAYA++ +TA++K HYP EF+AA ++ M N +++ K+ I ++PP VNT Sbjct: 790 SHSAAYALLVMRTAYLKAHYPYEFMAAVLSSYMGNADRLIKYISSCTHSGIPVLPPDVNT 849 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882 ++F + I + LA ++G+G A+ I+ E A+ P+ SL DF +R+D+K NR+ L Sbjct: 850 SNLEFTPLEEGIRFGLAGVRGIGEAVAQSIIDEREANGPYSSLHDFVNRLDAKCYNRKTL 909 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF-----AHEKGTFS 935 E+LV +GA D GY+R QL+ +D+ + + A +K+R ++F + G F Sbjct: 910 EALVKSGAFDSTGYTRKQLMHFIDDTPLLESAAKRQKDRDAGQVSMFDLFADVPDSG-FD 968 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-- 993 D + + + E+ +L Y S HPL Y+ L + K + +A +G+ Sbjct: 969 DDVPAPDGIEWDKRMLLAYEKEILKIYVSDHPLRPYERSLESV-TKYHLGDLAEHKGDIK 1027 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 N A +V S K TRKG+++ + E F Sbjct: 1028 NAVFAGLVASVTVKMTRKGTKMANFDLEDTTGHMECVCF 1066 >gi|307565570|ref|ZP_07628050.1| DNA polymerase III, alpha subunit [Prevotella amnii CRIS 21A-A] gi|307345729|gb|EFN91086.1| DNA polymerase III, alpha subunit [Prevotella amnii CRIS 21A-A] Length = 1241 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 366/1059 (34%), Positives = 552/1059 (52%), Gaps = 100/1059 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 ++HL VH+ YS+L+G ++N++DK D +AITD +F EF+ CA Sbjct: 4 YIHLHVHTHYSILDGQSKVSNLVDKAINDGMKGMAITDHGVMFGIKEFAD-YCATKNKER 62 Query: 67 -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSR 118 +PI GC++ + + K+T++ K +++L GY+ LI+LVS+ Sbjct: 63 KAKGEEPFKPIFGCEMYVARR---KLTDKVKEMHDNSGYHLIVLAKNYNGYKNLIKLVSK 119 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 ++ D R L++ E LI+ + +G I + A + L +KKLF Sbjct: 120 SWV-DGYYYRPRTDREQLEKY-HEDLIICSACLAGEIPSKIRKGDIEGAREACLWYKKLF 177 Query: 179 GDRLYVNLQRHRGYD----RYRES-----QV----VQLAYTHELPLVATNNSLFLSEEDY 225 GD Y+ LQRH D RE+ QV +Q A + + LV TN+ F +E Sbjct: 178 GDDFYLELQRHEVTDPNLIANREAFPLQQQVNRVLMQFAKDYNIKLVCTNDCHFEDKETA 237 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 EAHD L+ ++ + + R R + + K R EM IFSD+PEAL NT+EI + Sbjct: 238 EAHDHLLCLSTNDDLDDPKRMRYSKQEWFKTREEMNQIFSDVPEALSNTIEILNKIEIYD 297 Query: 286 QVHAPILPRFIEKEC--------DDIQKEE-----------ENEL----RNKAV---AGL 319 H PI+P F E + KE+ EN+L NK + G Sbjct: 298 INHGPIMPFFPIPEDFGTEAQWREKFSKEDLYHEFTSDENGENQLPEQEANKVIDRLGGY 357 Query: 320 E------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E +LA + Y ++ R+ FEL+V+ M F GYFLIV DFI Sbjct: 358 EKIYRIKFEADYLAKLAYDGACRLYGDPLPEEVNSRIRFELHVMKTMGFPGYFLIVQDFI 417 Query: 365 QWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 A+ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF Sbjct: 418 NAAENELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFD 477 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D R +V+++V +KYGHE+ A IIT+ ++ K +++DV R ++P + + LCK IP+ Sbjct: 478 DDGRGKVLQWVMDKYGHEKCAHIITYSTMATKNSIKDVARVEKLPLERSNALCKAIPDRL 537 Query: 484 AHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + + + AI+ +EA +++ +R ++ ++ LEG R HA G +I P+ Sbjct: 538 PNGMKMNLKNAISCTPMLQEAMVSENERERNTIKYAKMLEGTIRGTGIHACGFIICRNPI 597 Query: 540 SQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 VP+ D +PVTQ++ IE GLIK DFLGLKTL+ L+++ + Q Sbjct: 598 DDWVPVSTATDPDFPDKKVPVTQYDGHVIETTGLIKMDFLGLKTLSELKEACKVIRQTTG 657 Query: 595 KV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 KV D+ IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ +LYRPG Sbjct: 658 KVIDIEKIPIDDALTYQLYQKGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPG 717 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D L Sbjct: 718 PMDYIPDFIKRKNDPSLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDAL 777 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 R+AMGKK K +D K +FI +NG I I+ KFA Y FNKSHA Y+ ++ Sbjct: 778 RKAMGKKKKNIVDAMKPKFIKQGQENGHDPKILEKIWSDWEKFASYAFNKSHATCYSWVA 837 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K HYP E++AA MT + +I K ++ + I+ + P VN + F V + Sbjct: 838 YQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIETLGPDVNESQIGFGVNKH 897 Query: 834 -RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I + L+AIKG+GT A +I+ E + P+ + +F RVD +NR+V+ESL ++G Sbjct: 898 GEIRFGLSAIKGIGTGAAENIVKEREKNGPYKDIFNFIERVDLCSINRKVIESLAYSGGF 957 Query: 892 DCFG--YSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 D G R + LD + +Y Q + + ++F G S +T Sbjct: 958 DNLGPIKCREEYFGVNAKGEVFLDTLLRYGQLFQTAKAEAANSLFG---GFDSVPVTRPA 1014 Query: 943 FSVENSSVRFE---NEQRVLGFYFSGHPLDVYKPILRKM 978 V E E+ ++G Y S HPLD + +L + Sbjct: 1015 IPVTEKWATIEKLNKERELVGIYLSAHPLDEFAVVLNHL 1053 >gi|21220545|ref|NP_626324.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)] gi|256788317|ref|ZP_05526748.1| DNA polymerase III subunit alpha [Streptomyces lividans TK24] gi|289772211|ref|ZP_06531589.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces lividans TK24] gi|14194704|sp|Q9Z618|DPO3A_STRCO RecName: Full=DNA polymerase III subunit alpha gi|4324655|gb|AAD16978.1| DNA polymerase III alpha subunit [Streptomyces coelicolor A3(2)] gi|5596809|emb|CAB51456.1| DNA polymerase III alpha chain [Streptomyces coelicolor A3(2)] gi|289702410|gb|EFD69839.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces lividans TK24] Length = 1179 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 356/1072 (33%), Positives = 559/1072 (52%), Gaps = 64/1072 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ YSLL+GA L ++ D IA++D NL A +F A AG+ Sbjct: 4 PPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAKKAGVT 63 Query: 69 PIIGCQLDI--DMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVS 117 PIIG + + + + N + G+ P + + + ++G L L S Sbjct: 64 PIIGIEAYVAPESRRNKRKIQWGQ-PHQKRDDVSGSGGYTHKTMWATNSKGLHNLFRLSS 122 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Y ++ R+ + + +EG++ TG SG + A K ++ + Sbjct: 123 DAYAEGWLQKWPRMDKETISQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQDI 181 Query: 178 FG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ + Sbjct: 182 FGKDRYFLELMDHGIEIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALLCIQ 241 Query: 236 HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHA-PI 291 +S DR R +YLK+ EM +I S E NT IA + Sbjct: 242 TGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLIAEMIDTTGMFEKRDL 301 Query: 292 LPRF-IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 +P+F I + +I +E R G+E R G +D +++ ++E++VI + Sbjct: 302 MPKFDIPEGFTEITWFQEEVRR-----GMERRFPGGV------PEDRQKQAEYEMDVIIQ 350 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYFL+VADFI WAK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP Sbjct: 351 MGFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNP 410 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 411 ERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYA 470 Query: 471 QVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517 DRL K +P DP HP +A R ++P V ++++ ++ Sbjct: 471 MGDRLTKAMPADVLGKGIDLNGITDPTHPRYSEA----GEIRSMYESEPDVKKVIDTAKG 526 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EGL R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ Sbjct: 527 VEGLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLR 586 Query: 578 TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ ++ + + +G+ +DL +P DD T+ LL TLG+FQ + MR L M+ Sbjct: 587 NLTIMDDAVKMVKSNKGIDLDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMK 646 Query: 637 PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690 PD EDI A+ +LYRPGP +D+ Y RKNG ++I IH ++ L+E T G+I+ Sbjct: 647 PDNFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAVTYGLIV 706 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQV + AQ+++GYSL EAD+LRR MGKK +E+ K F +GA KNG S ++ Sbjct: 707 YQEQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQAGARKNGYSDEAIQALW 766 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L FA Y FNK+H+AAY ++SY T ++K +YP E++AA +T D+ +K + + R Sbjct: 767 DVLVPFAGYAFNKAHSAAYGLVSYWTGYLKANYPAEYMAALLTSVKDDKDKSAVYLNECR 826 Query: 811 QFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868 + I+++PP+VN +F GD+ I + L+A++ VGT I++ A + S D+ Sbjct: 827 RMGIKVLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYASFPDY 886 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +V++ N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 887 LDKVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFG 946 Query: 929 HEKGTFSDK--ITLEKFSVENS---SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 SD+ L+ E+ + E+ +LG Y S HPL + +L G Sbjct: 947 GMGDEQSDEPGFGLDVVFGEDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGI 1006 Query: 984 EESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + + ++ Q+K T++G+ T + A E FFP Sbjct: 1007 SQLTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058 >gi|225182038|ref|ZP_03735469.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1] gi|225167251|gb|EEG76071.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1] Length = 1022 Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust. Identities = 347/1031 (33%), Positives = 551/1031 (53%), Gaps = 55/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL+V S YS L GA L +++ + PAIA+ D L A+ F+ A GI+P Sbjct: 2 TFVHLRVKSEYSFLRGACRLEDLVARARELGMPAIALVDYGVLHGAVRFTNLARQYGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + + P +VLLV G+Q L+ LV+R+ L +S Sbjct: 62 ILGAEFSL----------------PCGLPLVLLVRDRTGWQNLVRLVNRVQLAR--PRSD 103 Query: 130 RICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + + W+ E G ++ GG + S Q + L + +FG +Y+ L+ Sbjct: 104 TLDMGWIAEDAAGLTAVLPAGGGET--------VRSRQSYIQALEQLQPVFGCEVYLGLE 155 Query: 188 RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R++++V ++A +PLVAT+N ++ D E + ++ + ++ R Sbjct: 156 DGGLPGTKRQNELVAKVAEGKNVPLVATHNVHYVLPGDDEVYRMVNCIRTGRPLAGAGRS 215 Query: 247 RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +YL +EM F+ A ENT+++A+RC+FIL+ LP F++++C ++ Sbjct: 216 FLPGAAYYLPAPAEMHRRFAAFSGACENTLDLAKRCTFILEQEGMQLPAFLQQDC---KE 272 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E LR + G++ R + +A+ YR RL+ EL VI S YFLIV D + Sbjct: 273 PAEAVLRRLCLEGMQRRGLE-------NAEAYR-RLERELAVIIPKGLSAYFLIVHDLVS 324 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+K NI VGPGRGS GS+ AY L I +DPL L FERFL+ DR PD D+D CQ Sbjct: 325 YARKQNISVGPGRGSAGGSLVAYLLGIIQVDPLAHGLYFERFLSEDRSGFPDIDLDVCQR 384 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+E++ Y++++YG VAQ+ F +L A+AA+R+VG+ L M ++ + + +P Sbjct: 385 RREELLGYLRDRYGQGYVAQVSAFSTLGARAAVREVGKVLDMTGEKISTVAEALPYYAGR 444 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 A+ F A+L D +L +++LEGL RH STHA+G++IGD L + +P+ Sbjct: 445 GGIEAAVGQYPEFMSAKLRDEDSGTVLAGARRLEGLCRHLSTHASGVIIGDGNLQEALPL 504 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 R ++ +TQ++ +E+ G +K D LG + LT+ +L ++ +R G + IP D Sbjct: 505 CRGPAGEV-LTQWDKDDVEEMGFLKIDVLGSRNLTIAHDALSWVRKRHGTTLVAEEIPLD 563 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662 D +TY +L +LG FQLES GMR+ L + P +ED+I L+SLYRPGP ++ +V + Sbjct: 564 DEDTYAMLRRGESLGCFQLESVGMRRVLRRLAPQRLEDLIHLLSLYRPGPWESGLVESFI 623 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 R++G+E + +HPL+ +L ET GV++YQEQVMQ+A L GY+ EAD LRR M +++ Sbjct: 624 ARRHGREDMSGVHPLLTGILAETYGVVLYQEQVMQVACELGGYTPGEADGLRREMSRRLP 683 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + + +F++GA K G+S+ A ++F L +FA Y FNK+H+AAYA++SY TA++K H Sbjct: 684 SLQEFHQPKFVAGAVKRGLSRAEAEDVFTHLCRFAGYSFNKAHSAAYALVSYWTAYLKKH 743 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVEF AA ++ + ++A + ++PP VN + F I +L + Sbjct: 744 YPVEFYAALLS-SGSGYYATAVYVREAAIRGVPVLPPHVNHSGLSFVPEKEAIRSALPVV 802 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 + +G A ++EA PF SL DFC RV L R L +L+ AGA G +R Q L Sbjct: 803 RDLGARAAEALLEAQKKGPFMSLHDFCCRVGRSALRRSALVNLIKAGAFAGLGRNRRQAL 862 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 SLD++ K W ++ E+ S L FS E LG Sbjct: 863 ASLDHVLK---WTDRQPGQLSLLDLMPEE---SAVPALPDFSWPEV---VAAELETLGMA 913 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 S HPL YK L+ + + G + +A V+ + +++ ++G + + S+ Sbjct: 914 LSDHPLACYKKQLQSVSREPLCNLCNLPVGTKVTVAGTVMGRTRRRLKQGGVMLTLFISD 973 Query: 1023 PAKEYEANFFP 1033 + EA F+P Sbjct: 974 ESGFAEAVFYP 984 >gi|15827612|ref|NP_301875.1| DNA polymerase III subunit alpha [Mycobacterium leprae TN] gi|221230089|ref|YP_002503505.1| DNA polymerase III subunit alpha [Mycobacterium leprae Br4923] gi|14194699|sp|Q9X7F0|DPO3A_MYCLE RecName: Full=DNA polymerase III subunit alpha gi|4539136|emb|CAB39586.1| putative DNA polymerase III alpha chain [Mycobacterium leprae] gi|13093163|emb|CAC31588.1| DNA polymerase III, [alpha] subunit [Mycobacterium leprae] gi|219933196|emb|CAR71302.1| DNA polymerase III, [alpha] subunit [Mycobacterium leprae Br4923] Length = 1177 Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust. Identities = 365/1079 (33%), Positives = 572/1079 (53%), Gaps = 83/1079 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + + ++ Q PA+ +TD N+F A EF A AGI+P Sbjct: 5 SFVHLHNHTEYSMLDGAAKITPMFAEVERLQMPAVGMTDHGNMFGASEFYNTAIKAGIKP 64 Query: 70 IIGCQLDIDMQ---DNLKMT-------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + I D ++T + + ++ A G + L +L S Sbjct: 65 IIGVEAYIAPGSRFDTRRITWGDPSQKADDVSAGGAYTHLTMVAENAAGLRNLFKLSSLA 124 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Q + R+ + E EG+I+ TG SG + + A + ++++ G Sbjct: 125 SFEGQLSKWSRMDAELIGEY-AEGIIVTTGCPSGEVQTRLRLGHDREALESAAKWREIVG 183 Query: 180 -DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 D ++ L H G R RE ++ + +P +ATN+ +++ + H+ L+ V Sbjct: 184 PDNYFLELMDH-GLSIEQRVREG-LLNIGRKLNIPPLATNDCHYVTRDAVHNHEALLCVQ 241 Query: 236 HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI-- 291 +S +R + D +YLK+ +EM ++ D +P A ++T+ IA R V P Sbjct: 242 TGKTLSDPNRFKFHGDGYYLKSAAEMRQLWDDEVPGACDSTLLIAERVQSYADVWEPRNR 301 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P F + ++ + LR++ AGL+ R G Y +R +E++VI Sbjct: 302 MPVFPVP----VGHDQASWLRHEVDAGLKRRFPDGP------PNGYVERAAYEIDVICDK 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFLIVAD + A+ I VGPGRGS AGS+ AYAL ITDIDP+ LLFERFLNP+ Sbjct: 352 GFPAYFLIVADLVNHARSVGIRVGPGRGSAAGSLAAYALGITDIDPIPHGLLFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469 R SMPD DIDF RR E++RY +K+GH+RVAQ+ITFG+++ KAAL+D R Q + Sbjct: 412 RTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGF 471 Query: 470 SQVDRLCK-LIPNDPAHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEG 520 + DR+ K L P A + L I D + RF+EA D V + + ++ LEG Sbjct: 472 AMADRITKALPPAIMAKDIPLSGITDPAHERFKEAAEVRSLIETDSDVRIIYQTARGLEG 531 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT Sbjct: 532 LIRNAGVHACAVILSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLT 591 Query: 581 LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ +++ + RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 592 IIGDAIENIKTNRGIDLDLESVPLDDQATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTG 651 Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQE 693 EDI+A+++LYRPGP+ Y +RKN ++ I IHP L +P+ L ET G+I+YQE Sbjct: 652 FEDIVAVLALYRPGPMGMNAHNDYADRKNNRQVIKPIHPELEEPLREILAETYGLIVYQE 711 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 Q+M+IAQ ++GYSL+ AD+LR+AMGKK +E ++K+ E F G NG S +++++ Sbjct: 712 QIMRIAQKVAGYSLARADILRKAMGKKKREVLEKEFEGFSEGMQANGFSVHAIKALWDII 771 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FADY FNKSHAA Y +ISY TA++K ++ E++A +T D+ +K + D R+F Sbjct: 772 LPFADYAFNKSHAAGYGLISYWTAYLKANFAGEYMAGLLTSVGDDKDKAAVYLADCRKFG 831 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV 872 I ++PP VN +DF I Y L A++ VG +++ +A F D+ +++ Sbjct: 832 ITVLPPDVNESVLDFASVGADIRYGLGAVRNVGANVVGSLIKTRNAKGKFADFSDYLNKI 891 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFA 928 D N++V ESL+ AGA D G+SR L ++D++ T K E I Sbjct: 892 DITSCNKKVTESLIKAGAFDSLGHSRKGLFLVHADAVDSVLG---------TKKAEAIGQ 942 Query: 929 HEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIKG 982 + +D T F+++ +E+ E+ +LG Y SGHPL+ +L Sbjct: 943 FDLFGGTDGGTDAVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQ---- 998 Query: 983 YEESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVT--FSEPAKEYEANFFP 1033 + ++ TI +R+ ++ + ++ + G I W + + E FFP Sbjct: 999 VDTAIPTILDGGVSNDTQVRVGGILAAVNRRVNKNG--IPWASAQLDDLTGGIEVMFFP 1055 >gi|242242967|ref|ZP_04797412.1| DNA polymerase III alpha chain [Staphylococcus epidermidis W23144] gi|242233568|gb|EES35880.1| DNA polymerase III alpha chain [Staphylococcus epidermidis W23144] Length = 1065 Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust. Identities = 344/1038 (33%), Positives = 554/1038 (53%), Gaps = 111/1038 (10%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H+S+ LL+ +L ++ ++DK + A+AITDTN L+ +F AA I PI G Sbjct: 4 HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I + D L T+ ++VL +G + L +L S + + K + Sbjct: 64 --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQLSSAIMM----KNKEEVP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191 + WL++ +I+ F ++++ K+++ F+ LY+N + Sbjct: 107 IEWLKKYDKHLIII--------------FKEAELSHKQIIDAFEG--KKELYLNHNSNNT 150 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248 R V ++ +L+E+D E L A+ +T ++ +K+ Sbjct: 151 LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191 Query: 249 TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302 T D + + E+ ++ +L E + NT EI + C + H +LP+F+ + Sbjct: 192 TLDEHFPSMEELQTL--NLSEDMIANTNEIEKLCQAEIAYHQSLLPQFVTPNGETSKDYL 249 Query: 303 ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I + ++ EL +K Y RL E +I M F YFL Sbjct: 250 WTILIHRLQKWELNDKT---------------------YFDRLKHEYKIITDMGFEDYFL 288 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD Sbjct: 289 IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF RR++VI+YVQ+KYG V+ I+TFG L A+A RDVGR + + ++ + KL Sbjct: 349 DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+ ++L+ F+ + +R E+S+KLEGL RH STHAAGI+I D+P Sbjct: 409 IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597 L + P+ L TQ+ M E+ GL+K DFLGL+ L+++ Q L + +D Sbjct: 467 LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP+DD + + LL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ Sbjct: 525 IEAIPYDDKKVFDLLSNGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y R++ ++ +HP ++P+LK T GVIIYQEQ+MQIA ++G+S EAD+LRRAM Sbjct: 585 IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMQIASQVAGFSYGEADILRRAM 644 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + ++ +++ FI GA NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y + Sbjct: 645 SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP F A ++ + + +K +A+ I I+PP++N +K + IY Sbjct: 705 YLKVHYPHYFYANILSNVIGSEKKTAAIIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 SL IKG+G + + I+ E + P+ DF R+ + NR++LESL+ GA D FG Sbjct: 765 SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LLQ++D + VE++ + +F + K + E+ + + E+ Sbjct: 825 TRATLLQAIDQVLDLNSDVEQD-----DMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015 LGFY S HP++ +K K Y G++ + + +Q +T+ G + Sbjct: 876 EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VT ++ + FP Sbjct: 930 AFVTMNDGRTMMDGVIFP 947 >gi|229552164|ref|ZP_04440889.1| possible DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229314466|gb|EEN80439.1| possible DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 1098 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 346/1041 (33%), Positives = 542/1041 (52%), Gaps = 85/1041 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L +++ A+A+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q++I ++++ GY +L++L +++ L Q Sbjct: 62 LLGMQIEI-----------------ADAKLLVIAENNTGYHQLLKLSTQIMLAQQ----- 99 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 L++ + GL +T S P A A+ L T K LY+ + Sbjct: 100 --PLAFADLLPLNGLAAVTLPDS-PFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGVD-- 154 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + E + A T +LPL+A N L+ D V++A+ + ++ +D P +T Sbjct: 155 ---EEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIETGSQLNFRD-PVLT 210 Query: 250 P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 +LK ++ F + L A+ T IA R + P LP + + Q Sbjct: 211 DAGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QT 266 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVA 361 ++ L +LA+ +AK +H Q Y+ RL +EL VI M F+ YFL+V Sbjct: 267 PSKDYL---------TKLAESGLAKRFHGQSIPPAYQDRLQYELRVIIEMGFADYFLVVW 317 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A K NI G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R MPD D+D Sbjct: 318 DVMNYAHKVNIMPGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLD 377 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RR E+I+YV +KYG +AQIITFG+ AK A+RDV R + + + K IPN Sbjct: 378 IPDNRRGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPN 437 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540 + L+ + S+ + +AD +R+L + + LEGL RH STHAAGIV+ + PL+ Sbjct: 438 --LFYIDLKTAYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 V + + L TQ +E GL+K DFLGLK L +L + F+ + G D Sbjct: 496 DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPK 554 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ESSG++ L ++P ED++A+ +LYRPGP++NI Sbjct: 555 AIPLDDQPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENID 614 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RKNG+E I P + +L+ T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K Sbjct: 615 TFIARKNGQEPIAYPDPALAKILRPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSK 674 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+ +++ A++ Sbjct: 675 KKSSVLAAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYL 734 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP F AA M M+N+ K++ + Q+A+ + ++ P +N FK+ +I + L Sbjct: 735 KVHYPAAFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGL 794 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 +IKG+ I A + PF L D R+D K L ++ AGA D F +R Sbjct: 795 LSIKGMRRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRA 854 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE----NSSVRFENE 955 Q L +LD + + + ++ G FS L ++E +S R E E Sbjct: 855 QTLANLDELINSVK------------LAGNDVGLFS---MLAPKTIEVPEMPASERLEAE 899 Query: 956 QRVLGFYFSGHPLDVYKPI---LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 VLG Y SGHP+D Y P+ R + + EE G + + +V ++ +T+ G Sbjct: 900 AEVLGVYLSGHPVDKYAPLKTQYRLINVSDLEE------GRAVDILLLVRHIKRIRTKTG 953 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + ++ + FP Sbjct: 954 KPMAFIDGQDATGNVSLTIFP 974 >gi|317488485|ref|ZP_07947036.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|325831887|ref|ZP_08164984.1| putative DNA polymerase III subunit alpha [Eggerthella sp. HGA1] gi|316912417|gb|EFV33975.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|325486208|gb|EGC88660.1| putative DNA polymerase III subunit alpha [Eggerthella sp. HGA1] Length = 1153 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 346/1057 (32%), Positives = 560/1057 (52%), Gaps = 62/1057 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN------NLFSALEFSQKAC 63 +FVHL H+ YSLL+G + +++ + A PA+AI+D L + + Sbjct: 2 AFVHLHNHTEYSLLDGHTHIYDMVKRAADLDMPAVAISDHGVMSGVPQLCEMCDKVEAET 61 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 ++PI GC++ + L+ K P + ++LL T EGY L++LVS ++ D Sbjct: 62 GKRVKPIYGCEVYFTTDEELR-----KDTKPKLYHLLLLAKTNEGYHNLVKLVSESHV-D 115 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE--KRLLTFKKLF--G 179 R S LQ+ G +G+I + +G I + ++ QV E + F F G Sbjct: 116 NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPK--LLDNRQVDEAVEWAKKFASCFEPG 172 Query: 180 DRLYVNLQRH-----RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 D Y+ LQ G+ + + ++ +A L +ATN+ +L+ ED A D ++ Sbjct: 173 D-FYIELQNQGIRTDAGFTQTELNHMLTDVAKAAGLKTIATNDFHYLTREDARAQDYMLC 231 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + + +R R D Y+K EM D PEA + TVE+A + + +L+ + IL Sbjct: 232 IGTGAAFNDANRMRFENDQFYMKTEEEMREALKDFPEACDTTVEVAEKVNVVLERDS-IL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 PRF E + EE+ R + GL Q+ ++R D+E+ +I + Sbjct: 291 PRFPLPEGE----TEESYFRKRVQEGLVKHYGNPV------PQEAQERADYEMGIIIQQG 340 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F YFLIV ++I+WA+ I VGPGRGS AG++ AYA+ IT +DPL LLFERFL+P+R Sbjct: 341 FPAYFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPER 400 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 + MPD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD R L PYS Sbjct: 401 VEMPDIDVDFEQGRREEVINHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYSTG 460 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 D++ K+I ++ + +A+A + ++A + V +++ + +EG R HA Sbjct: 461 DKITKMIGDELGITID-KALATNPDLKKAYETEEDVKAVIDAALSIEGHVRGEGVHACAT 519 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 +I P++ VPM RD + +TQ++ + + GL+K DFLGL+TL +L + + QR Sbjct: 520 IICRDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLTIACRNIEQR 579 Query: 593 -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G KV IP DD + L+ + G+FQ+E + + P DI+A ++L R Sbjct: 580 FGTKVIPEDIPIDDEGAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNR 639 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+++ +V Y +GK I + P+L+ET G ++YQEQ+MQI+ +SG+S + Sbjct: 640 PGPLESGMVEDYIKVASGKTSIHYYDERLRPILEETYGTMVYQEQIMQISMAMSGFSAGK 699 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD LR+AMGKK + M +E + +GA +NG IA I+E KFA Y FNKSH+AAY Sbjct: 700 ADKLRKAMGKKKLDVMRALQEDWNTGAVENGYPLEIAKQIWEDAEKFAKYAFNKSHSAAY 759 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++ +TA++K HYP +F+AA ++ M N +++ ++ I ++PP +N+ +F Sbjct: 760 AILVMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHSGIPVLPPDINSSNAEFT 819 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D + + L ++GVG A I+E A+ PF SL DF +R+D+K NR+ LE+L+ Sbjct: 820 PTDEGVRFGLVGVRGVGANVAEAIIEEREANGPFTSLHDFVNRLDAKCYNRKTLEALIKG 879 Query: 889 GALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944 GA D GY+R QL+ +D + + A +K+R + ++F F D E+ Sbjct: 880 GAFDSTGYTRKQLMYFVDETPLLESASKRQKDRESGQVSMF----DLFGDDPDSGFEEEV 935 Query: 945 VENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVATIRGNNI 995 E V + E+ ++ Y S HPL Y+ + +M + E I+ + Sbjct: 936 PEPDGVEWPKRQLLTFEKEIMKIYVSDHPLRPYEGTIARMTKFSLGDLAERTKEIK--SA 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 M+ + K T++G+++ T + E F Sbjct: 994 VFVGMISNVVTKLTKRGTKMATFTLEDTTGHVECICF 1030 >gi|297626372|ref|YP_003688135.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922137|emb|CBL56705.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1190 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 360/1063 (33%), Positives = 554/1063 (52%), Gaps = 73/1063 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG- 66 S +F HL VH+ YS+L+GA S + + ++A PA+A+TD N+F A EF Q A Sbjct: 3 SKNFAHLHVHTEYSMLDGAASNDKLFAEVARQGMPAVAMTDHGNMFGAYEFYQTAKKYDG 62 Query: 67 -----IQPIIGCQLDIDMQDNLKMT-----NQGKTPFPTVPS------------IVLLVS 104 ++PIIG + + L + N+ T P + +L + Sbjct: 63 EQNPLVKPIIGIEAYVAPSTRLSRSPEFWGNRRDTGSPDTEGGKDVSGGGRYTHMTMLAA 122 Query: 105 TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164 A G L +L S + + R+ + + +EG+I TG SG + Sbjct: 123 NATGLHNLFKL-SSLASYEGYYMKPRMDRELIAKY-SEGIIGSTGCPSGEVQTRLRLGQF 180 Query: 165 QVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLS 221 + A + ++ + G + Y L H G D + + +++LA +LPL+ATN+S +++ Sbjct: 181 EEACEAAAAYQDILGKENYYCELMDH-GVDIEHQVRADLLRLAKRLKLPLLATNDSHYVT 239 Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 E+ + HD L+ + DR R +Y+K +EM ++F L EA +NT+ IA R Sbjct: 240 EDQADDHDNLLCIGVGRNKDDPDRFRFNGSGYYIKTAAEMRALFPGLEEAADNTLAIAER 299 Query: 281 CSFILQVHAPI--LPRFIEKECDDIQKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQD 336 +V + + +P+F D+ E E LR K GL+ G H D Sbjct: 300 IESYEEVFSYVDRMPQF------DVPAGETQESWLRKKVKIGLKKHY-------GDHPSD 346 Query: 337 -YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 +R++ EL VI + FS YFL+V+D A+K +PVGPGRGS AGS+ AY I I Sbjct: 347 AVMERVETELKVIEPLGFSSYFLVVSDICDAARKMGVPVGPGRGSAAGSIIAYLTDIIAI 406 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DPL LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TF ++AK Sbjct: 407 DPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGEEYTSQVNTFNKIKAK 466 Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDS--------RFREARLADP 506 AA++D R L P+S DR+ K +P D V L + D+S FR +DP Sbjct: 467 AAVKDANRILGYPFSLGDRITKAMPPDVMGKGVPLNKLFDESNGRYSEGQEFRNLYNSDP 526 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 V R+++ +EGL R + HA ++ L LVPM++ + + + F +E+ Sbjct: 527 DVKRVVDTGMGIEGLIRGSGVHACAFILSSEKLLNLVPMHKRDKDGMIIAGFAYPQLEEM 586 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GL+K DFLGL+ L ++ + + + RG VDL +P DD TY L+ TLG+FQL+ Sbjct: 587 GLMKMDFLGLRNLGIMDHCVKNIKRNRGEDVDLQKLPLDDAATYELMARGDTLGVFQLDG 646 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----ID 679 MR L M P C +DIIA+++LYRPGP+ + + Y +RKNG+ IV IHP +D Sbjct: 647 GAMRSLLRQMGPTCFDDIIAVIALYRPGPMGANAHIEYADRKNGRRPIVPIHPELKDDLD 706 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 +L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +D+ + F G N Sbjct: 707 EILAPTYHLIVYQEQIMAIARKLAGYTLGGADLLRRAMGKKKKYILDENFKPFQKGMRDN 766 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G S +++++ FA Y FNKSHA YA++SY TA++K +YP E+ AA +T D+ Sbjct: 767 GYSDESMQALWDVMVPFAGYAFNKSHATGYALVSYWTAYLKANYPAEYGAALLTSVGDDK 826 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859 +K+ + D R I+++ P VN +F I + L AI+ VG + I+EA D Sbjct: 827 DKMALYLSDMRAQRIKVLAPDVNASEKEFTAVGEDIRFGLGAIRNVGDSVVGGIVEARTD 886 Query: 860 K-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 P +F V N+R +ESL+ AGA D G+SR L+ + +++N Sbjct: 887 HGPAHDFFEFLDNVPLSVCNKRCIESLIKAGAFDSMGHSRRALMDVFETAVDGVIDLKRN 946 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVE-----NSSVRFENEQRVLGFYFSGHPLDVYKP 973 + N +++F G ++ +V + + E+ +LG Y S HPL + Sbjct: 947 QANGQDDLFGDLGGGDAESDPAMNHTVPDIPDWDKRTKLAFEREMLGLYVSDHPLRGLEH 1006 Query: 974 IL---RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 +L R +G+ E A G+ + M+ Q+K+T+KG+ Sbjct: 1007 VLSAERTIGLGQIAEQGAEADGHVEVICGMITQVQRKQTKKGA 1049 >gi|227893479|ref|ZP_04011284.1| possible DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] gi|227864704|gb|EEJ72125.1| possible DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] Length = 1035 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 352/1032 (34%), Positives = 549/1032 (53%), Gaps = 60/1032 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ + ++L A+ +TD N + + F + A AGI+P++G Sbjct: 6 LQNLSSFTLLDSPTKIVDLLKTAKEKGYQAVGLTDVNVTYGLVNFYELAKRAGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132 Q+ ++ G +++ GY L+ L S + LL D G+ + Sbjct: 66 QVRLN----------GLIDSTQKYDLIVFAKNNAGYHNLLRLSSAINLLTDNGQNDKILT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L+ L + + L+++ + + F N Q+ + KKL + LY+ + Sbjct: 116 LTELTKYLDDLLVIVPANTHSELLNLFETNQ-QLGSDYIRDLKKLTSE-LYLGVYASNSS 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251 + Y + V LA ELPLVAT + +L D L A+ S Q P D Sbjct: 174 ESYVDY-VHALAKQFELPLVATEDCEYLRPRDQFLQKTLRAI-RSGQKMQDTIPLAKQDG 231 Query: 252 -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 H+L N EM+ + +L +A+ NT +IA C+ + P+LP++ + D EE Sbjct: 232 SHFLANAEEMLERYHRFNLDDAVNNTWKIAEECNAEVIFQKPVLPKYHQ---DKFATSEE 288 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L + A GL+ R +G + +Y++RL++EL VI +M F YFLIV D I + Sbjct: 289 -YLHHLAQTGLQARFGKGKVPA-----EYQKRLNYELRVINQMGFDNYFLIVWDVINYCH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS GS+ +YAL IT++DPL++ LLFERFLNP R MPD D+D RD Sbjct: 343 RVKITTGPGRGSACGSLVSYALRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRD 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + +V++ + IP ++ Sbjct: 403 TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWARAIPYS-KDKMT 461 Query: 489 LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ ++SR E RL A P L + + +LEGL RH S HAAG+VI D ++ + + Sbjct: 462 LKRAYEESR--ELRLLVDATPENKLLFKTAMELEGLPRHYSIHAAGLVISDDSIAGISGL 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 +PVTQ K++E GL+K DFLGL+ LT+L LD + Q+GV +D + IP +D Sbjct: 520 QAGPLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRQQGVNIDPNKIPLND 578 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T +FQ ES G+RQ L + PD ED++A+ +LYRPGP+ NI + RK Sbjct: 579 QATLKLFQEGKTDAVFQFESGGIRQVLRKLHPDDFEDLVAVNALYRPGPMQNIDTFIARK 638 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ + Sbjct: 639 NGQEPVKYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVI 698 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ +FI+G K G K +A ++ + +FA+YGFN+SHA AY I++ A++K HYP Sbjct: 699 EQERSKFITGTVKKGHPKEVAERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPA 758 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F A L K + + A++ +I I+ P +N +D+ + +N I L AIKG+ Sbjct: 759 AFYTA--MLNSSTAVKAQGYIMQAQEADIHILAPDINRSHLDYSLENNDILVGLKAIKGL 816 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS- 904 A+ I E K + SL DF R+D+K L +E+L+ AGA D +R +LL + Sbjct: 817 RVDFAKEIAENK--KQYKSLSDFLRRIDAKFLQVDAIEALIMAGAFDQIEDNRNELLANC 874 Query: 905 ---LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 + N+Q Q + + + EK T ++K E E++VLGF Sbjct: 875 KEIIANVQLTGQNISLSEILGDAPLKPAEKPTNAEKA--------------EMEEKVLGF 920 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + PL + +K + + I + I + ++ K Q +T+ G + + TF+ Sbjct: 921 ATTTTPLVAVQKYAKKFDARALNQ--FQINESGISVGKLMKYK-QIRTKNGKTMAFATFA 977 Query: 1022 EPAKEYEANFFP 1033 + + + E FP Sbjct: 978 DSSSQQEVIIFP 989 >gi|257790804|ref|YP_003181410.1| DNA polymerase III, alpha subunit [Eggerthella lenta DSM 2243] gi|257474701|gb|ACV55021.1| DNA polymerase III, alpha subunit [Eggerthella lenta DSM 2243] Length = 1153 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 346/1057 (32%), Positives = 560/1057 (52%), Gaps = 62/1057 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN------NLFSALEFSQKAC 63 +FVHL H+ YSLL+G + +++ + A PA+AI+D L + + Sbjct: 2 AFVHLHNHTEYSLLDGHTHIYDMVKRAADLDMPAVAISDHGVMSGVPQLCEMCDKVEAET 61 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 ++PI GC++ + L+ K P + ++LL T EGY L++LVS ++ D Sbjct: 62 GKRVKPIYGCEVYFTTDEELR-----KDTKPKLYHLLLLAKTNEGYHNLVKLVSESHV-D 115 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE--KRLLTFKKLF--G 179 R S LQ+ G +G+I + +G I + ++ QV E + F F G Sbjct: 116 NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPK--LLDNRQVDEAVEWAKKFASCFEPG 172 Query: 180 DRLYVNLQRH-----RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 D Y+ LQ G+ + + ++ +A L +ATN+ +L+ ED A D ++ Sbjct: 173 D-FYIELQNQGIRTDAGFTQTELNHMLTDVAKAAGLKTIATNDFHYLTREDARAQDYMLC 231 Query: 234 VAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + + +R R D Y+K EM D PEA + TVE+A + + +L+ + IL Sbjct: 232 IGTGAAFNDANRMRFENDQFYMKTEEEMREALKDFPEACDTTVEVAEKVNVVLERDS-IL 290 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 PRF E + EE+ R + GL Q+ ++R D+E+ +I + Sbjct: 291 PRFPLPEGE----TEESYFRKRVQEGLVKHYGNPV------PQEAQERADYEMGIIIQQG 340 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F YFLIV ++I+WA+ I VGPGRGS AG++ AYA+ IT +DPL LLFERFL+P+R Sbjct: 341 FPAYFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPER 400 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 + MPD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD R L PYS Sbjct: 401 VEMPDIDVDFEQGRREEVISHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYSTG 460 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 D++ K+I ++ + +A+A + ++A + V +++ + +EG R HA Sbjct: 461 DKITKMIGDELGITID-KALATNPDLKKAYETEEDVKAVIDAALSIEGHVRGEGVHACAT 519 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 +I P++ VPM RD + +TQ++ + + GL+K DFLGL+TL +L + + QR Sbjct: 520 IICRDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLTIACRNIEQR 579 Query: 593 -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G KV IP DD + L+ + G+FQ+E + + P DI+A ++L R Sbjct: 580 FGTKVIPEDIPIDDEGAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNR 639 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+++ +V Y +GK I + P+L+ET G ++YQEQ+MQI+ +SG+S + Sbjct: 640 PGPLESGMVEDYIKVASGKTSIHYYDERLRPILEETYGTMVYQEQIMQISMAMSGFSAGK 699 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD LR+AMGKK + M +E + +GA +NG IA I+E KFA Y FNKSH+AAY Sbjct: 700 ADKLRKAMGKKKLDVMRALQEDWNTGAVENGYPLEIAKQIWEDAEKFAKYAFNKSHSAAY 759 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++ +TA++K HYP +F+AA ++ M N +++ ++ I ++PP +N+ +F Sbjct: 760 AILVMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHSGIPVLPPDINSSNAEFT 819 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D + + L ++GVG A I+E A+ PF SL DF +R+D+K NR+ LE+L+ Sbjct: 820 PTDEGVRFGLVGVRGVGANVAEAIIEEREANGPFTSLHDFVNRLDAKCYNRKTLEALIKG 879 Query: 889 GALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944 GA D GY+R QL+ +D + + A +K+R + ++F F D E+ Sbjct: 880 GAFDSTGYTRKQLMYFVDETPLLESASKRQKDRESGQVSMF----DLFGDDPDSGFEEEV 935 Query: 945 VENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKM---GIKGYEESVATIRGNNI 995 E V + E+ ++ Y S HPL Y+ + +M + E I+ + Sbjct: 936 PEPDGVEWPKRQLLTFEKEIMKIYVSDHPLRPYEGTIARMTKFSLGDLAERTKEIK--SA 993 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 M+ + K T++G+++ T + E F Sbjct: 994 VFVGMISNVVTKLTKRGTKMATFTLEDTTGHVECICF 1030 >gi|159026760|emb|CAO86641.1| dnaE [Microcystis aeruginosa PCC 7806] Length = 874 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 319/792 (40%), Positives = 481/792 (60%), Gaps = 61/792 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D+ QPAIA+TD ++ A+E + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPALIDRAIELGQPAIALTDHGVMYGAIELIKTCRNKGIKP 61 Query: 70 IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QG 125 IIG ++ + D++ NL+ + V+L +GY+ L++L + L QG Sbjct: 62 IIGNEMYVVNGDIEVNLRHRKYHQ---------VVLAKNTQGYKNLVKLTTISNLKGIQG 112 Query: 126 KQS-VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 K R C++ LQ+ EGLI+ + G I +A N+ ++A++ +KKLFGD Sbjct: 113 KGIFARPCINKELLQQY-HEGLIVTSACLGGEIPQAILANNRKLAKETAKWYKKLFGDDF 171 Query: 183 YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q H DR ++V++A + +VATN+S F+S D EAHD L+ + + +++ Sbjct: 172 YLEIQDHGSKEDRIVNVEIVKIAKELGIKVVATNDSHFISCYDVEAHDALLCIQTAKLIT 231 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILPRF 295 + R R + YLK+ EM +F D LPE A+ NT+E+A + + P LP + Sbjct: 232 EDKRLRYSGTEYLKSADEMRLLFRDHLPEDVIEEAINNTLEVAEKVEPYNIFNEPRLPNY 291 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKF 353 ++ + A GL RL H + Y++RL++EL ++ +M F Sbjct: 292 PVPAG----HTADSYVEEIAWLGLLERLK----CPSRHEIEPVYKERLEYELKMLQKMGF 343 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 S YFL+V D+I++A+ ++IPVGPGRGS AGS+ AY+L IT+IDP+ LLFERFLNP+R Sbjct: 344 STYFLVVWDYIKYARDHDIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERK 403 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC +RRDE+I+YV KYG VAQIITF + +KA L+DV R L +PY++ D Sbjct: 404 SMPDIDTDFCIERRDEMIQYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESD 463 Query: 474 RLCKLIPNDPAHPVSLQAIADDSR----FREARLADPSVDRLLEISQKLEGLYRHASTHA 529 ++ K+IP P L+ + D F+E +P V L+++ ++EG + HA Sbjct: 464 KMAKMIPVSRGKPTPLKVMISDETPEPAFKERYDTEPHVRHWLDMAIRIEGTNKTFGVHA 523 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI +PL ++VP+ ++ + +TQ+ M+ +E GL+K DFLGL+ LT L+K+ D + Sbjct: 524 AGVVISSQPLDEVVPLQKNNDGAV-ITQYFMEDLESLGLLKMDFLGLRNLTTLKKTADLI 582 Query: 590 AQ-RGVKVDLSLIPFDDHETYH-------------LLTTKGTL------GIFQLESSGMR 629 Q +G+++DL +P D+ + +L T G L GIFQLESSGM+ Sbjct: 583 KQNQGIEIDLDQLPLDERKALQIRAKGEHKKLPPDILKTHGLLEEGDLEGIFQLESSGMK 642 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 Q ++ ++P IEDI ++++LYRPGP+D I ++ RK+G+E I HPL++P+LKET Sbjct: 643 QIVKELKPSGIEDISSILALYRPGPLDAGLIPLFIGRKHGREPIRYDHPLLEPILKETYA 702 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK EM KQ+E FI GA+KNG+ K IA Sbjct: 703 VLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKASEMQKQREMFIDGAAKNGVEKRIAE 762 Query: 748 NIFELLAKFADY 759 N+FE + FA+Y Sbjct: 763 NLFEQMVNFAEY 774 >gi|323466669|gb|ADX70356.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus helveticus H10] Length = 1041 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 340/1028 (33%), Positives = 550/1028 (53%), Gaps = 52/1028 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ ++++++ A+ + D N + + F + A AGI+P++G Sbjct: 12 LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 71 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132 QL ++ G ++ T GY L+ L S + +L D G+ + + Sbjct: 72 QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 121 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + + F + Q+ + K+L D LY+ + + Sbjct: 122 LKDLSKYLADLLLIVPANTKSEL-LSLFETNKQLGSDLIRDLKELTSD-LYLGVYANPSM 179 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251 Y + V L+ +LPL+AT +S +L+ D L A+A + Q P + Sbjct: 180 QNYIDY-VRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKI-QDALPLAKQEG 237 Query: 252 -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HYL +++ + DL +A+ NT ++A +C+ + P+LP++ +K+ E Sbjct: 238 SHYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----ATSE 293 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L A GL+ R Q I +Y++RL++EL VI +M F YFLIV D I + Sbjct: 294 EYLHYLAQTGLQQRFGQNKIPA-----EYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 348 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS GS+ +Y+L IT++DP+ ++LLFERFLNP R MPD D+D +RD Sbjct: 349 RVQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRD 408 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + ++ + IP ++ Sbjct: 409 TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGK-IT 467 Query: 489 LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ SR E RL A P L + + LEGL RH S HAAG+VI D ++ + + Sbjct: 468 LKEAYQQSR--ELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGL 525 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 +PVTQ K++E GL+K DFLGL+ LT+L L+ + Q+G+K+D + IP +D Sbjct: 526 QAGPLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLND 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T +FQ ES G+RQ L + PD ED++A+ ++YRPGP+ NI + RK Sbjct: 585 AQTLQLFQQGKTDAVFQFESVGIRQVLRKLHPDNFEDLVAVNAIYRPGPMQNIDAFVRRK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ + Sbjct: 645 NGQEAVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVI 704 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +++K +FI+ K G +K IA +++ + +FA+YGFN+SHA AY I+Y A++K HYP Sbjct: 705 EQEKGKFIADTIKQGHTKAIAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPA 764 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F A + K + + A++ NI+I+PP +N +++ + + +I L AIKG+ Sbjct: 765 AFYTAMLNSAAG--AKAQDYIMQAQEANIKILPPDINHSSLEYTLKNKQILVGLKAIKGL 822 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 AR I A KP+ SL DF R+D K L +++L+ AGA D +R +LL + Sbjct: 823 RVDFAREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNC 880 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D I Q +N + + G K E E +++ E++VLGF + Sbjct: 881 DEIIANVQLTGRNIS------LSEILGNAPLKPADEPTGAEKAAM----EEKVLGFSTTT 930 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PL + +K + + G + ++ +Q +T+ G + + +F++ + Sbjct: 931 SPLIAVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSG 987 Query: 1026 EYEANFFP 1033 E E FP Sbjct: 988 EQEVVIFP 995 >gi|166366657|ref|YP_001658930.1| DNA polymerase III subunit alpha [Microcystis aeruginosa NIES-843] gi|166089030|dbj|BAG03738.1| DNA polymerase III alpha subunit [Microcystis aeruginosa NIES-843] Length = 874 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 319/792 (40%), Positives = 480/792 (60%), Gaps = 61/792 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D+ QPAIA+TD ++ A+E + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPALIDRAIELGQPAIALTDHGVMYGAIELIKTCRNKGIKP 61 Query: 70 IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QG 125 IIG ++ + D++ NL+ + V+L +GY+ L++L + L QG Sbjct: 62 IIGNEMYVVNGDIEVNLRHRKYHQ---------VVLAKNTQGYKNLVKLTTISNLKGIQG 112 Query: 126 KQS-VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 K R C++ LQ+ EGLI+ + G I +A N+ ++A++ +KKLFGD Sbjct: 113 KGIFARPCINKELLQQY-HEGLIVTSACLGGEIPQAILANNRKLAKETAKWYKKLFGDDF 171 Query: 183 YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q H DR ++V++A + +VATN+S F+S D EAHD L+ + + +++ Sbjct: 172 YLEIQDHGSKEDRIVNVEIVKIAKELGIKVVATNDSHFISCYDVEAHDALLCIQTAKLIT 231 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILPRF 295 + R R + YLK+ EM +F D LPE A+ NT+E+A + + P LP + Sbjct: 232 EDKRLRYSGTEYLKSADEMRLLFRDHLPEDVIEEAINNTLEVAEKVEPYNIFNEPRLPNY 291 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKF 353 ++ + A GL RL H + Y++RL++EL ++ +M F Sbjct: 292 PVPAG----HTADSYVEEIAWLGLLERLK----CPSRHEIEPVYKERLEYELKMLQKMGF 343 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 S YFL+V D+I++A+ ++IPVGPGRGS AGS+ AY+L IT+IDP+ LLFERFLNP+R Sbjct: 344 STYFLVVWDYIKYARDHDIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERK 403 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC +RRDE+I+YV KYG VAQIITF + +KA L+DV R L +PY++ D Sbjct: 404 SMPDIDTDFCIERRDEMIQYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESD 463 Query: 474 RLCKLIPNDPAHPVSLQAIADDSR----FREARLADPSVDRLLEISQKLEGLYRHASTHA 529 ++ K+IP P L+ + D F+E +P V L+++ ++EG + HA Sbjct: 464 KMAKMIPVSRGKPTPLKVMISDETPEPAFKERYDTEPHVRHWLDMAIRIEGTNKTFGVHA 523 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI +PL ++VP+ ++ + +TQ+ M+ +E GL+K DFLGL+ LT L+K+ D + Sbjct: 524 AGVVISSQPLDEVVPLQKNNDGAV-ITQYFMEDLESLGLLKMDFLGLRNLTTLKKTADLI 582 Query: 590 AQ-RGVKVDLSLIPFDDHETYH-------------LLTTKGTL------GIFQLESSGMR 629 Q +G+ +DL +P D+ + +L T G L GIFQLESSGM+ Sbjct: 583 KQNQGIDIDLDQLPLDERKALQIRAKGEHKKLPPDILKTHGLLEEGDLEGIFQLESSGMK 642 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 Q ++ ++P IEDI ++++LYRPGP+D I ++ RK+G+E I HPL++P+LKET Sbjct: 643 QIVKELKPSGIEDISSILALYRPGPLDAGLIPLFIGRKHGREPIRYDHPLLEPILKETYA 702 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK EM KQ+E FI GA+KNG+ K IA Sbjct: 703 VLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKASEMQKQREMFIDGAAKNGVEKRIAE 762 Query: 748 NIFELLAKFADY 759 N+FE + FA+Y Sbjct: 763 NLFEQMVNFAEY 774 >gi|21234220|ref|NP_639831.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)] gi|13620707|emb|CAC36747.1| putative DNA polymerase III, alpha chain (EC 2.7.7.7) [Streptomyces coelicolor A3(2)] Length = 1213 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 343/1096 (31%), Positives = 565/1096 (51%), Gaps = 94/1096 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-IQ 68 SFVHL H+ YS+L+GA L + ++ PA+A++D N+F A EF Q A G ++ Sbjct: 17 SFVHLHNHTEYSMLDGAQKLKPMFAEVDRQGMPAVAMSDHGNMFGAYEFQQVAKGFGSVK 76 Query: 69 PIIGCQLDI-----------------------DMQDNLKMTNQGKTPFPTVPSIVLLVST 105 PIIG + + D + + ++ G+ + + + Sbjct: 77 PIIGIEAYVAPSSRRNRRQEFWGPGGQRAVSDDGEGSKDVSGGGR-----FTHMTMWATG 131 Query: 106 AEGYQRLIELVSRMYLLDQ---GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 A+G + L + + Q GK R+ + + E EG++ TG SG + N Sbjct: 132 AQGLRNLFYMSTEASYTGQFPAGKP--RMDMELIAE-HAEGVVATTGCPSGAVQTRLRLN 188 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 A + ++ +FG + ++ L H +R +++LA LPL+ATN++ ++ Sbjct: 189 QYDEARQVASAYQDIFGKENYFLELMDHGLSIERDVREGLLRLARELSLPLLATNDAHYI 248 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 E +AHD L+ + + + R R + +YLK +EM ++F++LPEA +NT+ IA Sbjct: 249 HESQADAHDNLLCIGVGKNKADEKRFRFSGSGYYLKTAAEMRALFAELPEACDNTLLIAE 308 Query: 280 RCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337 R +V + +P+F + + Q E+ LR + + GL +R + Sbjct: 309 RVGSYDEVFDNVDEMPQFPDVPDGETQ---ESWLRKEVLTGLAMRYGDPV------PTEV 359 Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397 +R + E++VI M FS YFL+VAD ++A+ N +PVGPGRGS GS+ AYA IT++ P Sbjct: 360 LERFETEMSVIGPMGFSSYFLVVADICKYARDNGVPVGPGRGSATGSIVAYATRITELCP 419 Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457 L LLFERFLNP+R++ PD D+DF +RD+++RYV KYG E A + TFG ++AK A Sbjct: 420 LEHGLLFERFLNPERINPPDVDLDFDDRQRDKMVRYVTEKYGDEYTAMVNTFGKIKAKNA 479 Query: 458 LRDVGRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLA 504 ++D R L P+S +R+ K +P DP HP +A R Sbjct: 480 IKDSSRILGYPFSHGERITKALPPDIMGKSIPLDGIFDPEHPRHGEA----GEIRTMYEN 535 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 +P V +++ ++ +EGL R HAA +++ L+ +P++ + +T F+ E Sbjct: 536 EPDVKTVIDTARGVEGLTRGTGVHAAAVILSKTRLTDRIPLHMRASDGVKITGFDYPSCE 595 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV----------DLSLIPFDDHETYHLLT 613 GL+K DFLGL+ L ++ +++ + + RGV++ +IP DD +T+ LL Sbjct: 596 NMGLVKMDFLGLRNLGVIDHAIENIRENRGVRLATVDPMDGDSGTVVIPLDDKKTFELLG 655 Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKI 671 T G+FQL+ GMR L+ M+P EDI A ++LYRPGP+ + Y R+NGK++ Sbjct: 656 RGDTFGVFQLDGGGMRALLKLMEPSRFEDIAAALALYRPGPMAANAHTNYALRQNGKQEP 715 Query: 672 VSIHP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 IHP ++DP+L T ++I+QEQ+M IA++L+GY+L AD+LRRAMGKK E + Sbjct: 716 DPIHPELKEVLDPILGSTHHLLIFQEQIMAIARILAGYTLGGADMLRRAMGKKKPEVLAA 775 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 + E+F G N S+ I++++ F+ Y FNKSH A Y ++SY TA++K +YP E+ Sbjct: 776 EWEKFHDGMKANDYSEEAIKAIWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPAEY 835 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 +AA +T D+ +K + DAR+ + ++PP VN +F + + + L +++ VG Sbjct: 836 MAALLTSVGDDKDKAGIYLADARKLGVTVLPPDVNESVAEFTAVGDDVRFGLRSVRNVGD 895 Query: 848 TTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 ++ A K F S DF + D LN+R +ESL+ AGA D G++R L + Sbjct: 896 NVIDTVITARKTKGKFTSFADFLDKADLPALNKRAVESLIKAGAFDSLGHTRRGLCAVHE 955 Query: 907 NIQKYAQWVEKNRTNKHENIFA--------HEKGTFSDKITLEKFSVENSSVRFENEQRV 958 ++K +++FA + F + ++ + E+ + Sbjct: 956 TAIDAVVPLKKAAAYGQDDLFAGLGGGTGDDGESGFGLDVRIDDGEWSRKQL-LSTEREM 1014 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGW 1017 LG Y S HPLD + IL + +A+ R +RL+ ++ Q K T++G+ Sbjct: 1015 LGMYVSAHPLDGTEHILAAHRDTTIPDLLASGRTEGTVRLSGLITGVQNKVTKQGNAWAI 1074 Query: 1018 VTFSEPAKEYEANFFP 1033 V ++ E FFP Sbjct: 1075 VNLADRDGTIEVLFFP 1090 >gi|161507446|ref|YP_001577400.1| DNA polymerase III alpha subunit [Lactobacillus helveticus DPC 4571] gi|160348435|gb|ABX27109.1| DNA polymerase III alpha subunit [Lactobacillus helveticus DPC 4571] Length = 1035 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 340/1028 (33%), Positives = 550/1028 (53%), Gaps = 52/1028 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ ++++++ A+ + D N + + F + A AGI+P++G Sbjct: 6 LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132 QL ++ G ++ T GY L+ L S + +L D G+ + + Sbjct: 66 QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + + F + Q+ + K+L D LY+ + + Sbjct: 116 LKDLSKYLADLLLIVPANTKSEL-LSLFETNKQLGSDLIRDLKELTSD-LYLGVYANPSM 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251 Y + V L+ +L L+AT +S +L+ D L A+A + Q P + Sbjct: 174 QNYIDY-VRSLSKQFDLLLLATEDSEYLNPHDQFLQKTLRAIATGDKI-QDALPLAKQEG 231 Query: 252 -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HYL +++ + DL +A+ NT ++A +C+ + P+LP++ +K+ E Sbjct: 232 SHYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----VTSE 287 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L A GL+ R Q I +Y++RL++EL VI +M F YFLIV D I + Sbjct: 288 EYLHYLAQTGLQQRFGQNKIPA-----EYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS GS+ +Y+L IT++DP+ ++LLFERFLNP R MPD D+D +RD Sbjct: 343 RVQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRD 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + ++ + IP ++ Sbjct: 403 TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGK-IT 461 Query: 489 LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ SR E RL A P L + + LEGL RH S HAAG+VI D ++ + + Sbjct: 462 LKEAYQQSR--ELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGL 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 +PVTQ K++E GL+K DFLGL+ LT+L L+ + Q+G+K+D + IP +D Sbjct: 520 QAGPLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLND 578 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T +FQ ES G+RQ L + PD ED++A+ +LYRPGP+ NI + RK Sbjct: 579 AQTLQLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRK 638 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ + Sbjct: 639 NGQEAVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVI 698 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +++K +FI+G K G +K +A +++ + +FA+YGFN+SHA AY I+Y A++K HYP Sbjct: 699 EQEKGKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPA 758 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F A + K + + A++ NI+I+PP +N +++ + + +I L AIKG+ Sbjct: 759 AFYTAMLNSAAG--AKAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGL 816 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 AR I A KP+ SL DF R+D K L +++L+ AGA D +R +LL + Sbjct: 817 RVDFAREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNC 874 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D I Q +N + + G K E E +++ E++VLGF + Sbjct: 875 DEIIANVQLTGQNIS------LSEILGNAPLKPADEPTGAEKAAM----EEKVLGFSTTT 924 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PL + +K + + G + ++ +Q +T+ G + + +F++ + Sbjct: 925 SPLIAVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSG 981 Query: 1026 EYEANFFP 1033 E E FP Sbjct: 982 EQEVVIFP 989 >gi|163846593|ref|YP_001634637.1| DNA polymerase III subunit alpha [Chloroflexus aurantiacus J-10-fl] gi|222524387|ref|YP_002568858.1| DNA polymerase III subunit alpha [Chloroflexus sp. Y-400-fl] gi|163667882|gb|ABY34248.1| DNA polymerase III, alpha subunit [Chloroflexus aurantiacus J-10-fl] gi|222448266|gb|ACM52532.1| DNA polymerase III, alpha subunit [Chloroflexus sp. Y-400-fl] Length = 1248 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 342/947 (36%), Positives = 509/947 (53%), Gaps = 51/947 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G + I + A +IA+TD ++ A+EF + A AGI+PI Sbjct: 4 FVHLHVHSEYSLLDGYATTKGITQRAAELGMDSIALTDHGVMYGAMEFYEAAKKAGIRPI 63 Query: 71 IGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK- 126 IG + + + D MT K F ++LL GY+ L++L +R +L GK Sbjct: 64 IGVEAYMAPGSLSD--PMTKGAKNYF----HLLLLAQNEVGYRNLVKLTTRAHLDGMGKG 117 Query: 127 --QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI L E EGLI+ + +G + + A + ++ L G DR Y Sbjct: 118 VFARPRIDRQLL-EAHHEGLIVTSACLAGEVLHYLKAGDRRAAVETAAYYRDLLGPDRYY 176 Query: 184 VNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQ H ++V++ +PLVAT+++ F+ ED +MA+ + + Sbjct: 177 LELQLHDNTPELEPLNDELVKIGRELGIPLVATSDAHFVRPEDKATQHKIMAMGMNMTYA 236 Query: 242 QKDRPRVTPD--HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEK 298 + D +++ + +M F E LENT IA C L+ LP F Sbjct: 237 EFCAREYAMDESYHILSGEQMWERFKRYGTEPLENTRRIADMCRLKLEFGRVQLPVFELP 296 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + LR GL R G +Y RL +EL+VI + F Y L Sbjct: 297 PGHDAA----SYLRLVCEEGLMRRF------NGQPPAEYMNRLAYELDVINQTGFPDYML 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV D++++A+ IP P RGS S+ YAL ITD+DP++ LLFERFL+P+R+ MPD Sbjct: 347 IVWDYVKFARSRGIPCLP-RGSAGASLVLYALGITDVDPVKNKLLFERFLSPERLEMPDI 405 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF RR E++ Y+ +KYG E VAQIIT+G+L AKAA+RD+GR L + +VDR+ KL Sbjct: 406 DTDFADSRRQEILDYIADKYGRENVAQIITYGTLGAKAAIRDMGRVLGLDPGEVDRVAKL 465 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP P QA+ ++ P + L++ +QK+EG R THA G+V+ P Sbjct: 466 IPALPVGTTIAQALERVPELKQIYETQPHLRELIDEAQKVEGRMRSVGTHACGVVVSRTP 525 Query: 539 LSQLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596 L++LVP+ R + + + F + K GL+K D LGL L+++ ++L ++ Q G ++ Sbjct: 526 LAELVPLQRTTKDENALMAAFEGPTLAKMGLLKMDILGLTNLSVVAEALKYIEQTTGRRM 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 L IP DD + + L T +FQLES+GM + L ++P +ED+ A+V+LYRPGP++ Sbjct: 586 WLDEIPLDDPKVFEALGRGETKNVFQLESAGMTRYLMQLKPTRVEDLYAMVALYRPGPLE 645 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I VY KN +I +HP+++P+L +T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A Sbjct: 646 QIPVYIQNKNNPSQIRYLHPVLEPILSDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKA 705 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 + KK +E M + + F G + GISK IA ++EL+ FA Y FN+ HA Y ++SYQT Sbjct: 706 ISKKNRELMAENEAIFKQGCQRKGISKEIADQLWELILPFAGYSFNRPHATLYGLLSYQT 765 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-------------- 822 AW+K +YPVE++ A +T +E + K +AR+ + ++PP VN Sbjct: 766 AWLKVNYPVEYMTAVLTGAGGVIEDVTKAALEARRLGVAVLPPDVNRSHKGFTIEPLAQP 825 Query: 823 -TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRR 880 P V + G I + L AIK VG I+ A A PF SLED C+RVD LN+R Sbjct: 826 LPPGVTHQRG---IRFGLMAIKNVGEGPVEAIIAAREAGGPFQSLEDLCARVDRHALNKR 882 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 LESL+ AGALD +R Q L LD +K R ++F Sbjct: 883 TLESLIKAGALDSLPGTRRQKLAILDQAVSAGIEAQKAREIGQSSLF 929 >gi|313206116|ref|YP_004045293.1| DNA polymerase iii, alpha subunit [Riemerella anatipestifer DSM 15868] gi|312445432|gb|ADQ81787.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer DSM 15868] gi|315022923|gb|EFT35946.1| DNA polymerase III alpha subunit [Riemerella anatipestifer RA-YM] gi|325336439|gb|ADZ12713.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer RA-GD] Length = 1550 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 341/1044 (32%), Positives = 554/1044 (53%), Gaps = 94/1044 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58 + + HS +S L+ S+ +++DK ++Q PA+ + D N+ A +F Sbjct: 248 YFNFHNHSIFSSLQSTTSIGDLIDKAKSNQFPAVGMVDLGNMMGAFKFVSDVEKYNSGVK 307 Query: 59 ---------SQKACAAG------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97 QKA G + ++GC+ I + K + T Sbjct: 308 KAHQEYLANKQKAEEEGADFNENAPESKELMAVLGCEFYISDRPEQKQFTKDDPDRRT-- 365 Query: 98 SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157 ++VLL GY+ L +L S Y+ R+ + + + +I +T G G I Sbjct: 366 NVVLLAKNFNGYKNLAKLSSLGYVNGFYFGVPRVSREMVAQY-KDDVIAVTSGIYGDIPD 424 Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNN 216 A Q E+R +K+ FG+ YV LQ H + ++V+ A + + ++A N Sbjct: 425 AILNFGEQKGEERFKWWKETFGEDFYVQLQNHGLQEEEHLNEVLLDFADRYNVKILAQNE 484 Query: 217 SLFLSEEDYEAHDVLMAVAH----STVVSQ---KDRPRVTPDHYLKNRSEMVSIFSDLPE 269 + + + D D++ + ST V + K + + + Y+K+ E+ F P+ Sbjct: 485 TFYTDKSDANIQDIVSCIKDGEKLSTPVGKGFGKRKGLRSQEFYIKDAEELKQCFRQYPD 544 Query: 270 ALENTVEIARRCSFILQVHAPILPRF-------IEKECDDIQKEEENE-LRNKAVAGLEV 321 A E E+ + +LP+F E++ D K EN LR+ G + Sbjct: 545 AFEAYTELLSKFEPYTLKRDVLLPKFDIPEEFQSEEDLKDGGKRGENAYLRHLTYEGAKK 604 Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 R + D R+RLDFEL +IA + GYFLIV DF A+K + VGPGRGS Sbjct: 605 RYDE-------ITDDIRERLDFELEIIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSA 657 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGS AY + IT++DP+++ LLFERFLNP+R+SMPD DIDF + RD +I++V +KYG Sbjct: 658 AGSAVAYCIGITNVDPIKYDLLFERFLNPERISMPDIDIDFDDEGRDRIIKWVIDKYGKS 717 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE- 500 VAQIIT+ L K+A++D GR L +P + + + KL+P+ P ++ +A++ + ++ Sbjct: 718 NVAQIITYSVLGGKSAIKDAGRVLDVPIPETNNIAKLVPSVPGMNIA-KALSKYDKLKDE 776 Query: 501 ---------ARLADPSVDR--LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 A L +P+ R +L+ ++K+EG R+ HA G++I +S LVP+ Sbjct: 777 DKVLVDEMKAVLDNPNDQRFPVLDSAKKMEGCIRNTGIHACGVIITPEDISNLVPISIAA 836 Query: 550 R-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHE 607 + +D+ V+QF+ E AGL+K DFLGL+TLT+++ +L + +R G+ ++ I DD + Sbjct: 837 KDADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKERHGIDINPDEISLDDAK 896 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY L T+GIFQ ES GM++ + ++P D+IA+ +LYRPGPI I + NRK+G Sbjct: 897 TYQLFKEGRTIGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHG 956 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 E+I+ P + LKET G+ +YQEQVM ++Q L+ ++ EAD LR+AMGKK + ++K Sbjct: 957 VEEIIYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNK 1016 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +FI G KN + + I+ FA+Y FNKSH+ YA+I+YQTA++K +YP E+ Sbjct: 1017 MYPKFIEGGKKNNLDEEKLNKIWNDWKAFAEYAFNKSHSTCYALIAYQTAFLKANYPAEY 1076 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVG 846 +A+ M+ ++N +I F +D R + ++ P VN F V D +I + L AIKG+G Sbjct: 1077 MASVMSNNINNTAQITMFMEDCRAMGVDVLGPDVNESQYKFSVNDKGQIRFGLGAIKGIG 1136 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ-- 903 + I + A F ++ DF RV ++N+RV+ESLV AGA D Y R Q Sbjct: 1137 EGPSEAISQERAKGKFKNIYDFFERVTPSQVNKRVVESLVMAGAFDEVDTYHRAQYFDID 1196 Query: 904 -----SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN---- 954 +++ + +Y Q ++++ ++FA F+++I +E+ + ++ ++N Sbjct: 1197 NSGKTNIEKLIRYGQSFQESKNEVENSLFAD----FAEEIQIEQPKIA-PAMEWQNMHKL 1251 Query: 955 --EQRVLGFYFSGHPLDVYKPILR 976 E+ ++GFY S HPLD YK R Sbjct: 1252 NKEKEIIGFYLSAHPLDEYKYQFR 1275 >gi|282859320|ref|ZP_06268432.1| DNA polymerase III, alpha subunit [Prevotella bivia JCVIHMP010] gi|282587900|gb|EFB93093.1| DNA polymerase III, alpha subunit [Prevotella bivia JCVIHMP010] Length = 1241 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 360/1063 (33%), Positives = 552/1063 (51%), Gaps = 108/1063 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 ++HL VH+ YS+L+G +NN++DK D +AITD +F EF+ CA Sbjct: 4 YIHLHVHTHYSILDGQSKINNLVDKAIKDGMKGMAITDHGVMFGIKEFAD-YCAKKNKER 62 Query: 67 -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSR 118 +PI GC++ + + K T++ K +V+L GY+ LI+LVS Sbjct: 63 KANGEEPFKPIFGCEMYVARR---KQTDKVKEMHDNSGYHLVVLAKNYNGYKNLIKLVSN 119 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 ++ D R L++ E LI+ T +G I + A + L +K LF Sbjct: 120 AWV-DGYYYRPRTDREQLEKY-HEDLIVCTACLAGEIPAKIRKGDIEGAREACLWYKNLF 177 Query: 179 GDRLYVNLQRHRGYD----RYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDY 225 G+ Y+ LQRH D RE+ ++Q + + + LV TN+S F +E Sbjct: 178 GEDFYLELQRHEVTDPTLIANREAYPLQQQVNKVLMQFSKEYGIKLVCTNDSHFEDKETA 237 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 EAHD L+ ++ + + R R + + K R EM +F D+PEA+ NT+EI + Sbjct: 238 EAHDHLLCLSTNEDLDDPKRMRYSKQEWFKTREEMNQVFEDVPEAMANTIEILNKVEMYN 297 Query: 286 QVHAPILPRF-------IEKEC------DDIQKE------EENEL--------------- 311 H PI+P F E+E +D+ KE EN L Sbjct: 298 IDHGPIMPFFPIPEDFGTEEEWRQKFSEEDLLKEFTSDENGENPLPEDEAKKVIERLGGY 357 Query: 312 ----RNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFI 364 R K A +L+ + Y Q + R+ FEL+V+ M F GYFLIV DFI Sbjct: 358 EKIYRIKFEADYLAKLSYDGAKRLYGDQLSEEVDSRIRFELHVMKTMGFPGYFLIVQDFI 417 Query: 365 QWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 A+ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF Sbjct: 418 NAAENELGVIVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFD 477 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D R +V+++V +KYGHE A IIT+ ++ K +++DV R ++P + + LCK IP+ Sbjct: 478 DDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPLDRSNALCKAIPDRL 537 Query: 484 AHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + + AI+ +EA +++ +R ++ ++ LEG R HA G +I P+ Sbjct: 538 PDGLKMNLKNAISCTPMLQEAMVSENERERNTIKYAKMLEGTVRGTGIHACGFIICRNPI 597 Query: 540 SQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G 593 VP+ D +PVTQ++ IE GLIK DFLGLKTL+ L+++ + Q G Sbjct: 598 DDWVPVSTATDPDYPDQKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVIKQTTG 657 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 ++D+ IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ +LYRPG Sbjct: 658 KEIDIEKIPIDDELTYQLYQKGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPG 717 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+ + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D L Sbjct: 718 PMDYIPDFIKRKHDPTLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDAL 777 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 R+AMGKK K +D K +FI +NG + I+ KFA Y FNKSHA Y+ ++ Sbjct: 778 RKAMGKKKKNIVDAMKPKFIKQGQENGHDPKVLEKIWSDWEKFASYAFNKSHATCYSWVA 837 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832 YQTA++K HYP E++AA MT + +I K ++ + I+ + P VN + F V Sbjct: 838 YQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIETLGPDVNESQIGFGVNKR 897 Query: 833 NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I + L+AIKG+GT A +I+ E + P+ + DF RVD +NR+V+E+L ++G Sbjct: 898 GEIRFGLSAIKGIGTGAAENIVKERETNGPYKDIFDFVERVDLSSINRKVIENLAYSGGF 957 Query: 892 DCFGY-----------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 D G S+ + LD + +Y Q + ++ ++F G F D I + Sbjct: 958 DSLGTITRREEYFGVNSKGEAF--LDTLLRYGQLYQTSKAEAANSLF----GGF-DSIPV 1010 Query: 941 EKFSVENSSV-----RFENEQRVLGFYFSGHPLDVYKPILRKM 978 + +V + + E+ ++G Y S HPLD + +L + Sbjct: 1011 ARPAVPPAEAWANIEKLNKERELVGIYLSAHPLDEFSVVLNHL 1053 >gi|301066411|ref|YP_003788434.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang] gi|300438818|gb|ADK18584.1| DNA polymerase III, alpha subunit [Lactobacillus casei str. Zhang] Length = 1098 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 338/1038 (32%), Positives = 549/1038 (52%), Gaps = 79/1038 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L++++ + AIA+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q+ ID ++++ +GY +L+++ +++ L Sbjct: 62 LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLATS----- 99 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 +++ + GL+ +T S P A N A L + +YV L Sbjct: 100 --PVAFADLLPLTGLVAITLPDS-PFSAAVVANDHDRAVAFLQELDNKQPEAVYVGLD-- 154 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ + A + +L L+A N L+ D V+ A+ + ++ +D P +T Sbjct: 155 ---EAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRD-PVLT 210 Query: 250 P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 +LK ++ + F + L A++NT +IA + + P LP + Sbjct: 211 DAGPWWLKPPADASAPFVAAGLQAAVDNTAQIADQTDVTITFKQPQLPHY---------- 260 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVA 361 + ++L +K +LAQ +A +H Q Y+QRL +EL+VI +M F+ YFL+V Sbjct: 261 QTPDQLASKDYL---TKLAQEGLANRFHDQPIPTTYQQRLQYELDVIIKMGFADYFLVVW 317 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A K NI G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R MPD D+D Sbjct: 318 DVMNYAHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLD 377 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RR E+I+YV +KYG +AQIITFG+ AK A+RDV R M + + + IPN Sbjct: 378 IPDNRRGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPN 437 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540 + L+ D S+ + +AD +R+L + + LEGL RH STHAAGIV+ + PL+ Sbjct: 438 --LLHMDLKTAYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 V + + L TQ +E GL+K DFLGLK L +L + F+ + G D Sbjct: 496 DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPK 554 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D T L T G+FQ ES+G++ L ++P ED++A+ +LYRPGP++NI Sbjct: 555 QIPLNDQPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENID 614 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RKNG+E I P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K Sbjct: 615 TFIARKNGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSK 674 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+++++ A++ Sbjct: 675 KKSSVLAAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYL 734 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K H P F AA M M+N+ K++ + Q+A+ + ++ P +NT FK+ D +I + L Sbjct: 735 KVHDPAAFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGL 794 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++KG+ + I A + PF D R++ K L + L+ AGA D F +R Sbjct: 795 LSVKGMRRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRA 854 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS----DKITLEKFSVENSSVRFENE 955 Q + +LD + + + ++ G FS I + + + R E E Sbjct: 855 QTIANLDELINSVK------------LAGNDVGLFSVLAPKPIVVPEMP---AGERLEEE 899 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 VLG Y SGHP+D Y P+ + + V G + + +V ++ +T+ G + Sbjct: 900 ANVLGVYLSGHPVDKYAPLKTQYTLVNV---VDLAEGRTVDILLLVRHIKRIRTKTGKPM 956 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 957 AFVDGQDATGTVSLTVFP 974 >gi|239631558|ref|ZP_04674589.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526023|gb|EEQ65024.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 1098 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 338/1038 (32%), Positives = 549/1038 (52%), Gaps = 79/1038 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L++++ + AIA+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q+ ID ++++ +GY +L+++ +++ L Sbjct: 62 LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLATS----- 99 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 +++ + GL+ +T S P A N A L + +YV L Sbjct: 100 --PVAFADLLPLTGLVAITLPDS-PFSAAVVANDHDRAVAFLQELDNKQPEAVYVGLD-- 154 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ + A + +L L+A N L+ D V+ A+ + ++ +D P +T Sbjct: 155 ---EAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRD-PVLT 210 Query: 250 P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 +LK ++ + F + L A++NT +IA + + P LP + Sbjct: 211 DAGPWWLKPPADASAPFVAAGLQAAVDNTAQIADQTDVTITFKQPQLPHY---------- 260 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVA 361 + ++L +K +LAQ +A +H Q Y+QRL +EL+VI +M F+ YFL+V Sbjct: 261 QTPDQLASKDYL---TKLAQEGLANRFHDQPIPTTYQQRLQYELDVIIKMGFADYFLVVW 317 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A K NI G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R MPD D+D Sbjct: 318 DVMNYAHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLD 377 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RR E+I+YV +KYG +AQIITFG+ AK A+RDV R M + + + IPN Sbjct: 378 IPDNRRGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPN 437 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540 + L+ D S+ + +AD +R+L + + LEGL RH STHAAGIV+ + PL+ Sbjct: 438 --LLHMDLKTAYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 V + + L TQ +E GL+K DFLGLK L +L + F+ + G D Sbjct: 496 DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPK 554 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D T L T G+FQ ES+G++ L ++P ED++A+ +LYRPGP++NI Sbjct: 555 QIPLNDQPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENID 614 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RKNG+E I P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K Sbjct: 615 TFIARKNGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSK 674 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+++++ A++ Sbjct: 675 KKSSVLAAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYL 734 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K H P F AA M M+N+ K++ + Q+A+ + ++ P +NT FK+ D +I + L Sbjct: 735 KVHDPAAFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGL 794 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++KG+ + I A + PF D R++ K L + L+ AGA D F +R Sbjct: 795 LSVKGMRRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRA 854 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS----DKITLEKFSVENSSVRFENE 955 Q + +LD + + + ++ G FS I + + + R E E Sbjct: 855 QTIANLDELINSVK------------LAGNDVGLFSVLAPKPIVVPEMP---AGERLEEE 899 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 VLG Y SGHP+D Y P+ + + V G + + +V ++ +T+ G + Sbjct: 900 ANVLGVYLSGHPVDKYAPLKTQYTLVNV---VDLAEGRTVDILLLVRHIKRIRTKTGKPM 956 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 957 AFVDGQDATGTVSLTVFP 974 >gi|56964489|ref|YP_176220.1| DNA polymerase III alpha subunit DnaE [Bacillus clausii KSM-K16] gi|56910732|dbj|BAD65259.1| DNA polymerase III alpha subunit DnaE [Bacillus clausii KSM-K16] Length = 1095 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 350/1024 (34%), Positives = 560/1024 (54%), Gaps = 68/1024 (6%) Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75 V+S YSLL+ ++ ++ A+++TD + L+ A+ F Q AG++P++G ++ Sbjct: 8 VYSEYSLLQSTNRVDELVQAAKEAGYTALSLTDRHVLYGAVPFFQSCRKAGLKPLLGLEV 67 Query: 76 DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 + + + + +P + ++ EGY++L+ + + Q KQ+ +W Sbjct: 68 TVRLDEEI------------IP-VRMVAKNEEGYRQLVAHSTSLGF--QTKQAAIELETW 112 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195 + T + + AF A+ L F + L ++ G Sbjct: 113 -KANSTACFVFIP-------KEAFV-----AAKGNWLHFWERLAGGLEAFIELAGGES-- 157 Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255 + +++Q A H++P VA + FL +ED + ++ A+ T + + +L Sbjct: 158 -DHELIQFANAHQIPCVAAPPTRFLRKEDAPVYQLVRAIGAGTTTTHLELEEGWQRWHLP 216 Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE-LRNK 314 + + F + +AL +A + L P +P + D + E+ ++ L Sbjct: 217 TANSLKERFPE--KALLQARALAEKVEPYLPEEKPRIPAY-----DGLTVEQADKRLETL 269 Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374 GL+ R ++ + +RL+ EL +IA +S YFLIVADF+ +AKK+ I Sbjct: 270 CQQGLKARYKAVSV-------EAERRLEHELAIIAERGYSSYFLIVADFVGYAKKSGILT 322 Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434 GPGRGS A S+ AY L ITD+DPL LLFERFLNP+R S+PD D+DF RRDEVI YV Sbjct: 323 GPGRGSSASSIVAYTLFITDVDPLAHDLLFERFLNPERASLPDIDVDFPDYRRDEVIAYV 382 Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK-LIPNDPAHPVSLQAIA 493 + ++GH+RVAQ++TFG+ A+AA+RDVG+AL + ++ VDR+ K LIP +SL Sbjct: 383 RERFGHDRVAQVLTFGTFAARAAIRDVGKALSIRHTFVDRVAKSLIPAS----LSLNEAQ 438 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 + F+ L P +D LL ++++EGL RHASTHAAG++I D+PL+ + + Sbjct: 439 EKGVFK--GLESPELDELLFFAKQIEGLPRHASTHAAGVIISDKPLNNKTALQLGIDGH- 495 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612 VTQ +M + + GL+KFDFLGL+ LTLL++ L + Q GV ++L IP +D T+ LL Sbjct: 496 AVTQADMDSLARLGLVKFDFLGLRNLTLLERMLKVIEQEEGVALNLQHIPLNDKATFQLL 555 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 + GIFQLES+GMRQ L+ +QP EDI+A +LYRPGP+ I Y K+G + + Sbjct: 556 QQGKSTGIFQLESAGMRQVLKQLQPSQFEDIVATSALYRPGPMAFIPEYIRGKHGHTQAI 615 Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732 H + P+++ T GV++YQEQ+MQ+ Q + YSL+EAD+ RRA+ KK + + +++ +F Sbjct: 616 VPHESLRPIVEPTFGVLVYQEQIMQVVQATANYSLAEADLFRRAISKKQHDVIIQERHQF 675 Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792 I A +NG A IF L+ +FA+YGF KSHA AY+ ISY A+++ H+P F AA Sbjct: 676 IHRAVENGFLPEEAEAIFSLIERFANYGFPKSHATAYSFISYWLAYLRVHFPAAFFAALF 735 Query: 793 TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852 + N EK+ + +A++ I+++PPSV + F++ + +I + L I GV Sbjct: 736 SSVWQNHEKLYSYINEAKKEGIRVLPPSVCKSGLLFELENGQIRFGLLPISGVNVQAVNE 795 Query: 853 IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912 I+ +L F + V S +N+RV+E+L+ AGALD FG SR LL +LD + + Sbjct: 796 IISKRRKNSDSNLFMFYAHVASTAVNKRVMEALIKAGALDEFGQSRATLLGNLDKAEAF- 854 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN---EQRVLGFYFSGHPLD 969 VE+ R+ K A G F+ K + + S + E+ E+ VLGFY SGHP++ Sbjct: 855 --VEQVRSFK-----ASSGGLFTIKPAVPAYLDVTPSTKMEDLEGEREVLGFYLSGHPIE 907 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 L G E + + + +R+A MV+ ++ T+KG + ++T S+ + E Sbjct: 908 NELERLAPFGRIPLAECIPSRK--PVRIAGMVIDVKKIVTKKGEAMAFLTLSDESGECSC 965 Query: 1030 NFFP 1033 FP Sbjct: 966 VAFP 969 >gi|302544658|ref|ZP_07297000.1| DNA polymerase III, alpha subunit [Streptomyces hygroscopicus ATCC 53653] gi|302462276|gb|EFL25369.1| DNA polymerase III, alpha subunit [Streptomyces himastatinicus ATCC 53653] Length = 1180 Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust. Identities = 356/1080 (32%), Positives = 548/1080 (50%), Gaps = 81/1080 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+GA L ++ IA+TD NL A +F Q+A AA I PI Sbjct: 9 FTHLHVHTQYSLLDGAARLKDMFKACQQMGMSHIAMTDHGNLHGAYDFFQQATAAAITPI 68 Query: 71 IGCQLDI---------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 IG + + Q ++ G T+ + G L L Sbjct: 69 IGIEAYVAPESRRSKRKVRWGQPHQKRDDVSGSGGYTHKTI-----WAADRTGLHNLFRL 123 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S Y ++ R+ + E GLI TG SG + A K ++ Sbjct: 124 SSDAYAHGWLQKWPRMDKEVIAEHAA-GLIASTGCPSGEVQTRLRLGQFDEALKAASAYQ 182 Query: 176 KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG DR ++ L H +R ++++ +P + TN+S + + +AHD L+ Sbjct: 183 DIFGRDRYFLELMDHGIEIERRVRDGLLEVGRKLGIPPLVTNDSHYTYAHESQAHDALLC 242 Query: 234 VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFI-LQVHA 289 + ++ DR R +YLK+ EM +I S E NT+ +A + Sbjct: 243 IQTGKSLAVADRFRFDGTGYYLKSADEMYAIDSSDAWQEGCRNTLLVAEQVDVTGWFAKR 302 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 ++PRF E E R + G+ R G +D + +E++VI Sbjct: 303 DLMPRFDVPEG----YTEVTWFREEVRRGMARRFPGGV------PEDREKLAAYEMDVII 352 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFL+VADFI WAK N I VGPGRGS AGS+ +YAL ITD+DP+ L+FERFLN Sbjct: 353 QMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYALGITDLDPVEHGLIFERFLN 412 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G+++AK A++D R L PY Sbjct: 413 PERVSMPDVDIDFDERRRGEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPY 472 Query: 470 SQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516 + DR+ K +P DP HP +A R DP V ++++ ++ Sbjct: 473 AMGDRITKAMPADVFGKGIPLSGITDPEHPRYGEA----GEVRSMYEGDPDVKKVIDTAR 528 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +EGL R HAAG+++ P+ VP++ + +TQ++ E GL+K DFLGL Sbjct: 529 GVEGLVRQMGVHAAGVIMSSEPVVDHVPVWVRHTDGVTITQWDYPTCESLGLLKMDFLGL 588 Query: 577 KTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT++ ++ + A +G+ + L +P DD T+ LL TLG+FQ + S MR L M Sbjct: 589 RNLTIMDDAVKLVRANKGIDLKLLDLPLDDPTTFALLGRGDTLGVFQFDGSAMRSLLRLM 648 Query: 636 QPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVI 689 +P EDI A+ +LYRPGP +++ + Y RKNG+++I IHP ++ LKE T G++ Sbjct: 649 KPSHFEDITAVTALYRPGPMGMNSHINYALRKNGQQEITPIHPGVEDALKEVLDITYGLV 708 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQV + AQ+L+GYSL +AD+LRRAMGKK +E +DK+ F G G S + Sbjct: 709 VYQEQVQKAAQVLAGYSLGQADLLRRAMGKKKQEVLDKEFIPFRDGCRARGYSDDAVQAV 768 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 +++L FA Y +NK+HAAAYA++SY TA++K ++P E++AA +T D+ +K + + Sbjct: 769 WDVLVPFAGYAYNKAHAAAYALVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAVYLNEC 828 Query: 810 RQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLED 867 R+ I+++PP VN DF GD+ I + L A++ VG I+ A + S D Sbjct: 829 RKMGIKVLPPDVNESEADFTPRGDDTIVFGLTAVRNVGQNVVDSIIRRRRAAGRYASFPD 888 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +V++ N+R +ESL+ AG D G++R L + + V++ ++F Sbjct: 889 FLDKVEAVACNKRTIESLIKAGGFDALGHTRKGLTARYEPMVDTVVAVKRKEAEGQFDLF 948 Query: 928 AHEKGTFSDKITLEKFSVE--------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 G S ++ + E+ +LG Y S HPL + +L Sbjct: 949 GGGYGDGSGDGDSPALGLDVEFPDDEWEKAYLLAQEREMLGLYVSDHPLFGVEHLLSDRA 1008 Query: 980 IKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++A + G + + +V Q+K T++G+ T + A + FFP Sbjct: 1009 ----DAAIAQLTGGEHADGAIVTIGGIVSGLQRKMTKQGNAWAIATVEDLAGSLDCLFFP 1064 >gi|254821473|ref|ZP_05226474.1| DNA polymerase III subunit alpha [Mycobacterium intracellulare ATCC 13950] Length = 1177 Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust. Identities = 348/1002 (34%), Positives = 541/1002 (53%), Gaps = 59/1002 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + +L ++ Q PA+ +TD N+F A EF A AGI+P Sbjct: 5 SFVHLHNHTEYSMLDGAAKIAPMLAEVDRLQMPAVGMTDHGNMFGASEFYNAATKAGIKP 64 Query: 70 IIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + I + + + + + + ++ T G + L +L S Sbjct: 65 IIGVEAYIAPASRFDTRRILWGDPGQKSDDVSGSGSYTHMTMVAETPTGLRNLFKLSSLA 124 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Q + R+ + E EG+I TG SG + + A + ++++FG Sbjct: 125 SFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWREIFG 183 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H ++ ++++ +P +ATN+ +++ + H+ L+ V Sbjct: 184 ADNYFLELMDHGLSIEQRVRDGLLEIGRKLGIPPLATNDCHYVTRDAAHNHEALLCVQTG 243 Query: 238 TVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI--LP 293 +S +R + D +YLK+ +EM I+ D +P A ++T+ IA R +V AP +P Sbjct: 244 KTLSDPNRFKFDGDGYYLKSAAEMRRIWDDEVPGACDSTLLIAERVQPYDEVWAPRDRMP 303 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F E D + + L ++ +AGL R G QDY R ++E+ VI F Sbjct: 304 IFPVPEGHD----QASWLHHEVMAGLARRFPSGV------GQDYIDRAEYEIKVICDKGF 353 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIVAD I +A+ +I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R Sbjct: 354 PSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERP 413 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471 S PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 414 SAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 473 Query: 472 VDRLCKLIPND-PAHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEGLY 522 DR+ K +P A + L I D + R++EA DP V + + ++ LEGL Sbjct: 474 ADRITKALPPPIMAKDIPLSGITDPAHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 533 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 534 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 593 Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +LD + A RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 594 GDALDNIKANRGIDLDLESVPLDDGPTYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFN 653 Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695 DI+A+++LYRPGP+ Y +RKNG++ I IHP L +P+ L ET G+I+YQEQ+ Sbjct: 654 DIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILSETYGLIVYQEQI 713 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 714 MFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILP 773 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 774 FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 833 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874 ++PP VN V+F I + L A++ VG ++ K F D+ +++D Sbjct: 834 VLPPDVNESLVNFASVGTDIRFGLGAVRNVGANVVGSLISTRNGKGKFTDFSDYLNKIDI 893 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQL-LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 N++V ESL+ AGA D G++R L L D + T K E I + Sbjct: 894 AACNKKVTESLIKAGAFDSLGHARKGLFLVHTDAVDSVLG------TKKAEAIGQFDLFG 947 Query: 934 FSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLD 969 D T F+++ +E+ E+ +LG Y SGHPL+ Sbjct: 948 GDDGCTEAVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLN 989 >gi|300778928|ref|ZP_07088786.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910] gi|300504438|gb|EFK35578.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910] Length = 1555 Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust. Identities = 338/1041 (32%), Positives = 539/1041 (51%), Gaps = 94/1041 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58 + + HS +S L S+N+++ K + + PA+ + D N+ A +F Sbjct: 248 YFNFDNHSVFSTLTATSSINDLIKKASDENFPAVGMVDLGNMMGAFKFVSAVEGANADRA 307 Query: 59 ---------SQKACAAGIQ------------PIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97 Q+A G + P++GC+ I D + K Sbjct: 308 KKHKEYLAKKQEAEENGTEFNEEEPVSEPLIPVVGCEFYI--SDRYEQKQFTKDDPDRRT 365 Query: 98 SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157 +VLL GY+ L +L S +L R+ + + EG+I LT G G I Sbjct: 366 QVVLLAKDFNGYKNLAKLSSIGFLKGFYFGVPRVSRELIAQY-KEGVIALTSGIMGDIPD 424 Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNN 216 A Q E+ +K F D YV +Q H+ + ++V+ LA + + ++A N Sbjct: 425 AILNTGEQKGEELFKWWKDTFEDDFYVQIQNHKLPEEEHLNEVLLYLADKYNVKILAQNE 484 Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQ-------KDRPRVTPDHYLKNRSEMVSIFSDLPE 269 + + +++D D++ + ++ K R T ++Y+K+ E+ F P+ Sbjct: 485 TFYTNKDDANIQDIVSCIKDGEKLTTPIGKGFGKRRGLATGEYYIKSSDEIKEAFLAYPD 544 Query: 270 ALENTVEIARRCSFILQVHAPILPRF--------IEKECDDIQKEEENELRNKAVAGLEV 321 A + E + +LP+F E E D ++ E L + G + Sbjct: 545 AFDAYEEFTAKFKPYTLKRDVLLPKFDIPEEFIHAEDEVDGGKRGEMAYLTHLTYEGAKN 604 Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 R + I + ++RLDFEL VIA + GYFLIV DF A+K + VGPGRGS Sbjct: 605 RYGEEGIT-----DEIKERLDFELEVIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSA 659 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGS AY + IT++DP+++ LLFERFLNP+R+SMPD DIDF + RD VI++V KYG Sbjct: 660 AGSAVAYCIGITNVDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRDRVIKWVIEKYGQS 719 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL------------ 489 +VAQIIT+ L K+A++D GR L +P + + KLIP+ P ++ Sbjct: 720 QVAQIITYSVLGGKSAIKDAGRVLDVPIPDTNNIAKLIPSTPGMNIAKALAKYDKLKPEE 779 Query: 490 QAIADDSRFREARLADPSVDR--LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 Q + D+ R+ L P R +L ++K+EG R+ HA G++I +S LVP+ Sbjct: 780 QMLVDEMRYV---LESPDDSRHGVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTI 836 Query: 548 DVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 + +D+ V+QF+ E AGL+K DFLGL+TLT+++ +L + A+ GV +D LIP DD Sbjct: 837 AAKDADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKARHGVDIDPDLIPLDD 896 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY L T+GIFQ ES GM++ + ++P D+IA+ +LYRPGPI I + NRK Sbjct: 897 AKTYQLFKEGRTVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRK 956 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G E+IV P + LKET G+ +YQEQVM ++Q L+ ++ EAD LR+AMGKK + + Sbjct: 957 HGIEEIVYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVL 1016 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +K +FI G KN +++ I+ FA+Y FNKSH+ YA I+YQTA++K +YP Sbjct: 1017 NKMYPKFIEGGRKNNLNEERLEKIWNDWKAFAEYAFNKSHSTCYAFIAYQTAYLKANYPA 1076 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKG 844 E++A+ M+ ++N + I F +D + + ++ P VN F V + +I + L AIKG Sbjct: 1077 EYMASVMSNNINNTDSITMFMEDCKSMGVDVLGPDVNESQYKFSVNEKGQIRFGLGAIKG 1136 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903 +G + I + F ++ DF R+ ++N+RV ESLV AGA D + R Q Sbjct: 1137 IGEGPSEAITRERENGRFKNIYDFFERILPSQMNKRVAESLVLAGAFDELDSFHRGQYFD 1196 Query: 904 -------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-----R 951 +L+ + +Y Q ++++ ++FA F++++ +E+ + + Sbjct: 1197 IDMAGKTNLERLIRYGQSFQESKNEMEHSLFAD----FAEEVQIEQPKLAPCPEWPNMHK 1252 Query: 952 FENEQRVLGFYFSGHPLDVYK 972 E+ ++GFY S HPLD +K Sbjct: 1253 LNKEKEIIGFYLSAHPLDEFK 1273 >gi|319401016|gb|EFV89235.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis FRI909] Length = 1065 Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust. Identities = 343/1038 (33%), Positives = 553/1038 (53%), Gaps = 111/1038 (10%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H+S+ LL+ +L ++ ++DK + A+AITDTN L+ +F AA I PI G Sbjct: 4 HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I + D L T+ ++VL +G + L +L S + + K + Sbjct: 64 --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQLSSAIMM----KNKEEVP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191 + WL++ +I+ F ++++ K+++ F+ LY+N + Sbjct: 107 IEWLKKYDKHLIII--------------FKEAELSHKQIIDAFEG--KKELYLNHNSNNT 150 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248 R V ++ +L+E+D E L A+ +T ++ +K+ Sbjct: 151 LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191 Query: 249 TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302 T D + + E+ ++ +L E + NT EI + C + H +LP+F+ + Sbjct: 192 TLDEHFPSIEELQTL--NLSEDMIANTNEIEKLCQAEIAYHQSLLPQFVTPNGETSKDYL 249 Query: 303 ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I + ++ EL +K Y RL E +I M F YFL Sbjct: 250 WTILIHRLQKWELNDKT---------------------YFDRLKHEYKIITDMGFEDYFL 288 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD Sbjct: 289 IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF RR++VI+YVQ+KYG V+ I+TFG L A+A RDVGR + + ++ + KL Sbjct: 349 DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+ ++L+ F+ + +R E+S+KLEGL RH STHAAGI+I D+P Sbjct: 409 IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597 L + P+ L TQ+ M E+ GL+K DFLGL+ L+++ Q L + +D Sbjct: 467 LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP+DD + + LL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ Sbjct: 525 IEAIPYDDKKVFDLLSNGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y R++ ++ +HP ++P+LK T GVIIYQEQ+MQIA ++ +S EAD+LRRAM Sbjct: 585 IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMQIASQVASFSYGEADILRRAM 644 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + ++ +++ FI GA NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y + Sbjct: 645 SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP F A ++ + + +K +A+ I I+PP++N +K + IY Sbjct: 705 YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 SL IKG+G + + I+ E + P+ DF R+ + NR++LESL+ GA D FG Sbjct: 765 SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LLQ++D + VE++ + +F + K + E+ + + E+ Sbjct: 825 TRATLLQAIDQVLDLNSDVEQD-----DMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015 LGFY S HP++ +K K Y G++ + + +Q +T+ G + Sbjct: 876 EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VT ++ + FP Sbjct: 930 AFVTMNDGRTMMDGVIFP 947 >gi|308180707|ref|YP_003924835.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046198|gb|ADN98741.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1116 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 340/1029 (33%), Positives = 553/1029 (53%), Gaps = 45/1029 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V LQV S++SLL +++ ++ A+A+TD + ++ ++F A I PI Sbjct: 4 YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSALALTDVDIMYGIVDFYNACRQAEINPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G L++ G+ S+V+L GYQ L++L + S+ Sbjct: 64 LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMQLSTMKQTATDAGLSLT 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 L +L L++LT + N+++ A + T ++ LY+ + Sbjct: 114 AVLPYLNH-----LMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 + + + A H+LP+VA + ++ +DY A VL A+ + Q + + + Sbjct: 169 QA--PALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HYL+ + + + + L L V + QV + + + Sbjct: 227 EGSHYLRPANTVTADYEQL--GLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPAN 284 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR AGL RLA AI Q Y+ RLD EL VI +M F YFLIV D + +A Sbjct: 285 VYLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN R +MPD D+D +RR+ Sbjct: 343 EAQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRRE 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR + ++ IPN H Sbjct: 403 QVLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQ-LHITL 461 Query: 489 LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 QA R + +AD S ++LL E +++LEGL RH STHAAG+V+ +PL Q+VP+ Sbjct: 462 DQAYQGSQRLQNL-VADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQA 520 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 + + +TQ+ +E GL+K DFLGL+ L+L+ +L ++ Q G + ++ I +D Sbjct: 521 GSET-MMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDP 579 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T L T G+FQ ES+G+R L + PD E + A+ +LYRPGP++NI + RK Sbjct: 580 ATLKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKQ 639 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+E + + P+L T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK + +D Sbjct: 640 GQEPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVID 699 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +++FI+GA +NG S+ +A +++ + +FA+YGFN+SHA AY+ ++++ A++K HY Sbjct: 700 KMRQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGA 759 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F + M + N K+K++ +ARQ + I+PP +N F I + L++IKG+ Sbjct: 760 FFTSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLR 819 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 ++ E A+ PF SL+ F R+D+K L ++++L++AGA D FG +R +LL S+ Sbjct: 820 RDFIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSV 879 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + A+ + + +F + + KI +K + R E LG Y SG Sbjct: 880 PELMSSAELAGGSMS-----LFE----SLAPKI--KKQPELSLGERLAKEAEYLGVYVSG 928 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPA 1024 HP++ Y + ++ + + V+T+ + ++K + +T++G + + T S+ + Sbjct: 929 HPVETYDWLAQQR----HTQLVSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLS 984 Query: 1025 KEYEANFFP 1033 E + FP Sbjct: 985 GEIDLTIFP 993 >gi|300767496|ref|ZP_07077408.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495315|gb|EFK30471.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 1116 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 340/1029 (33%), Positives = 553/1029 (53%), Gaps = 45/1029 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V LQV S++SLL +++ ++ A+A+TD + ++ ++F A I PI Sbjct: 4 YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSALALTDVDIMYGIVDFYNACRQAEITPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G L++ G+ S+V+L GYQ L+ L + S+ Sbjct: 64 LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 L +L L++LT + N+++ A + T +++ LY+ + Sbjct: 114 AVLPYLNH-----LMVLTPAKDSELAALLLQNTAERAADWITTLRQVVDSASLYLGISLD 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 + + + A H+LP+VA + ++ +DY A VL A+ + Q + + + Sbjct: 169 QA--PALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HYL+ + + + + L L V + QV + + + Sbjct: 227 EGSHYLRPANTVTADYEQL--GLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPAN 284 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR AGL RLA AI Q Y+ RLD EL VI +M F YFLIV D + +A Sbjct: 285 VYLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN R +MPD D+D +RR+ Sbjct: 343 EAQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRRE 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR + ++ IPN H Sbjct: 403 QVLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQ-LHITL 461 Query: 489 LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 QA R + +AD S ++LL E +++LEGL RH STHAAG+V+ +PL Q+VP+ Sbjct: 462 DQAYQGSQRLQNL-VADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQA 520 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 + + +TQ+ +E GL+K DFLGL+ L+L+ +L ++ Q G + ++ I +D Sbjct: 521 GSET-MMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDP 579 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T L T G+FQ ES+G+R L + PD E + A+ +LYRPGP++NI + RK Sbjct: 580 ATLKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKQ 639 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+E + + P+L T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK + +D Sbjct: 640 GQEPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVID 699 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +++FI+GA +NG S+ +A +++ + +FA+YGFN+SHA AY+ ++++ A++K HY Sbjct: 700 KMRQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGA 759 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F + M + N K+K++ +ARQ + I+PP +N F I + L++IKG+ Sbjct: 760 FFTSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLR 819 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 ++ E A+ PF SL+ F R+D+K L ++++L++AGA D FG +R +LL S+ Sbjct: 820 RDFIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSV 879 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + A+ + + +F + + KI +K + R E LG Y SG Sbjct: 880 PELMSSAELAGGSMS-----LFE----SLAPKI--KKQPELSLGERLAKEAEYLGVYVSG 928 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPA 1024 HP++ Y + ++ + + V+T+ + ++K + +T++G + + T S+ + Sbjct: 929 HPVETYDWLAQQR----HTQLVSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLS 984 Query: 1025 KEYEANFFP 1033 E + FP Sbjct: 985 GEIDLTIFP 993 >gi|210635289|ref|ZP_03298485.1| hypothetical protein COLSTE_02416 [Collinsella stercoris DSM 13279] gi|210158450|gb|EEA89421.1| hypothetical protein COLSTE_02416 [Collinsella stercoris DSM 13279] Length = 1267 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 359/1139 (31%), Positives = 562/1139 (49%), Gaps = 124/1139 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---- 65 +FVHL H+ YS+L+GA + +++ + QPA+AITD ++ E AC A Sbjct: 2 AFVHLHNHTVYSMLDGATRIKDMVQRAVDLGQPAVAITDHGYMYGVPELGL-ACDAVNHG 60 Query: 66 ----------------GIQPIIGC-------------QLDIDMQDNLKMTNQGKTPFPTV 96 G + + C D+ M D ++ K P Sbjct: 61 TPEYKVWSHDKSFLEKGRRDELECPDKDADPRGYEQHMKDLAMWDAQGNIDELKPPLVIK 120 Query: 97 P-----------------------SIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSVRIC 132 P +VL +GY L++ VS + QG R+ Sbjct: 121 PIFGCEVYFTPDDTLARDRKPELYHMVLFAQNEKGYVNLMQTVSEAAV--QGFYYKPRVT 178 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH-- 189 L L+ EGLI + +G I + A + TF+ F Y+ +Q H Sbjct: 179 LDNLRR-HREGLIASSACIAGIIPKCIDRGEMDKAIEWAETFRDTFEPGNFYIEIQEHGI 237 Query: 190 ---RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 G D ++++A + ++ATN+ +L+ +D DV+M + + + +R Sbjct: 238 TTDSGITDEELSKTLIEIARQVGVKVIATNDFHYLTRDDAPVQDVIMCIGTGSKIDDPNR 297 Query: 246 PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R+ + Y+K EM ++F PEA +NT+EIA +C+ L + ILP + D Sbjct: 298 IRMEGSEFYMKTEDEMRALFPYCPEACDNTLEIAEKCNVELDWDSIILPNY---PLLDPG 354 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E++ R + GL R K D R+R +FE VI F+ YFLIVA+++ Sbjct: 355 ETHESQFRRECEEGLAKRYGADWDGKEIGGVDIRERFEFEYKVICDKGFAAYFLIVAEYV 414 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+N I VGPGRGS AG++ AYA+ IT DPL L+FERFL+P+R MPD D+DF Sbjct: 415 RWAKQNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEMPDIDMDFDD 474 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EV+ +V+ YG E+V +IT+ +++AK A+ D R L P RL K++P DP Sbjct: 475 ERRLEVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVPGDPG 534 Query: 485 HPVSLQAIAD---------DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 V L+ + + + EA D R+++ + +EGL R HA ++I Sbjct: 535 --VKLKQVLEKIPGKEDMYNPDLVEAYQKDEDARRIIDTALSIEGLTRGEGVHACAVLIC 592 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 +++ VP D + + +TQ+ + GL+K DFLGL+TLT++ K+ + + G+ Sbjct: 593 RDAVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKNFGI 652 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D+ IPFDD + + L+++ T G+FQ+ES+GM ++ M+P + ++AL++LYRPGP Sbjct: 653 DIDVDAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYRPGP 712 Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 + +V Y NR NGKE VS P +D +L ET G ++YQEQVM I+ + G+S E+D Sbjct: 713 LGAGMVTSYINRMNGKEPAVSYDPRLDGILGETYGTMVYQEQVMLISVEMCGFSKGESDS 772 Query: 713 -LRRAMGKKIKEEMDKQ------------KERFISGASKNGISKTIAVNIFELLAKFADY 759 +R+ + KK + + Q + +++GA KNG + +A I++ + +FA Y Sbjct: 773 RIRKPVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKREVAQKIWDDVLEFASY 832 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSH+A YA++ QTAW+K HYP E++AA +T +KI + R I ++PP Sbjct: 833 AFNKSHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRHDGIAVLPP 892 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLN 878 +N +F + + LA I+GVG I+ E PF +L DF RVD+ + N Sbjct: 893 DINESGTEFTATAEGVRFGLAGIRGVGEGVTEAIIAEREKGGPFKNLHDFVERVDASQAN 952 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHE---NIFAHE 930 RRV+E+L+ GA D GY R QL+ +D NI A +K+R ++F Sbjct: 953 RRVIEALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQTSLFDVFGDV 1012 Query: 931 KGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------------ 977 +G+ + I E E + ++ E+ VLG Y S HPL Y+ L K Sbjct: 1013 EGSGFEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKAREFTLSQIDTG 1072 Query: 978 ---MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 MG G + G A MV S ++ T+ G + VT + E FP Sbjct: 1073 FETMGPAGNAVNQEIPEGKPYWWAGMVSSVSKRVTKNGDPMAIVTLEDMEGEATVVIFP 1131 >gi|229814931|ref|ZP_04445269.1| hypothetical protein COLINT_01974 [Collinsella intestinalis DSM 13280] gi|229809418|gb|EEP45182.1| hypothetical protein COLINT_01974 [Collinsella intestinalis DSM 13280] Length = 1272 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 360/1139 (31%), Positives = 562/1139 (49%), Gaps = 124/1139 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---- 65 +FVHL H+ YS+L+GA + +++ + PA+AITD ++ E AC A Sbjct: 7 AFVHLHNHTVYSMLDGATRIKDMVSRAVELGMPAVAITDHGYMYGVPELGL-ACDAVNHG 65 Query: 66 ----------------GIQPIIGC-------------QLDIDMQDNLKMTNQGKTPF--- 93 G + + C D+ M D ++ K P Sbjct: 66 TPEYKVWSHDKSFLEKGRRDELECPDQESDPRGYEQHMKDLAMWDEKGNIDELKPPLVIK 125 Query: 94 --------------------PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSVRIC 132 P + +VL +GY L++ VS + QG R+ Sbjct: 126 PIFGCEVYFTPDETLARDRKPELYHMVLFAQNEKGYVNLMQTVSEAAV--QGFYYKPRVT 183 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH-- 189 L L+ EGLI + +G I + A + TF+ F Y+ +Q H Sbjct: 184 LDNLRR-HREGLIASSACIAGIIPKCIDRGEMATAIEWAETFRDTFEPGNFYIEIQEHGI 242 Query: 190 ---RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 G D ++Q+A + ++ATN+ +L+ ED DV+M + ++ + +R Sbjct: 243 TTDSGITDEELSRTLIQIAEQVGVKVIATNDFHYLTREDAPVQDVVMCIGTNSKIDDPNR 302 Query: 246 PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R+ + Y+K EM ++F PEA +NTVEIA +C+ L + ILP + D Sbjct: 303 IRMEGSEFYMKTEEEMRALFPYCPEACDNTVEIAEKCNVELDWDSIILPNY---PLLDPG 359 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E++ R + GL R + D R+R +FE VI F+ YFLIVA+++ Sbjct: 360 ETHESQFRRECEEGLAKRYGDDWDGREIGGVDIRERFEFEYKVICDKGFAAYFLIVAEYV 419 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+N I VGPGRGS AG++ AYA+ IT DPL L+FERFL+P+R MPD D+DF Sbjct: 420 RWAKQNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEMPDIDMDFDD 479 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI +V+ YG E+V +IT+ +++AK A+ D R L P RL K++ DP Sbjct: 480 ERRLEVIEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVSADPG 539 Query: 485 HPVSLQAIAD---------DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 V L+ + + F EA D R+++ + +EGL R HA ++I Sbjct: 540 --VKLKQVLEKQPGKEDLYSPDFVEAYQKDEDARRIIDTALSIEGLTRGEGVHACAVLIC 597 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 +++ VP D + + +TQ+ + GL+K DFLGL+TLT++ K+ + + G+ Sbjct: 598 RDAVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKSFGI 657 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D+ IPFDD + + L+++ T G+FQ+ES+GM ++ M+P + ++AL++LYRPGP Sbjct: 658 DIDVDAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYRPGP 717 Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 + +V Y NR NGKE VS P +D +L ET G ++YQEQVM I+ + G+S E+D Sbjct: 718 LGAGMVTSYINRMNGKEPAVSYDPRLDGILGETYGTMVYQEQVMLISVEMCGFSKGESDS 777 Query: 713 -LRRAMGKKIKEEMDKQ------------KERFISGASKNGISKTIAVNIFELLAKFADY 759 +R+ + KK + + Q + +++GA KNG +++A I++ + +FA Y Sbjct: 778 RIRKPVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKRSVAQKIWDDVLEFASY 837 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSH+A YA++ QTAW+K HYP E++AA +T +KI + R I ++PP Sbjct: 838 AFNKSHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRHDGIAVLPP 897 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878 +N +F + + LA I+GVG + I+E PF +L DF RVDS + N Sbjct: 898 DINESGTEFTATPEGVRFGLAGIRGVGEGVTQAIIEEREKGGPFKNLHDFVERVDSSQAN 957 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHE---NIFAHE 930 RRV+E+L+ GA D GY R QL+ +D NI A +K+R ++F Sbjct: 958 RRVIEALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQTSLFDVFGDV 1017 Query: 931 KGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYKPILRK------------ 977 +G+ + I E E + ++ E+ VLG Y S HPL Y+ L K Sbjct: 1018 EGSGFEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKAREFTLSQIDTG 1077 Query: 978 ---MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 MG G + G A MV ++ T+ G + V + E FP Sbjct: 1078 FETMGPTGNAVNQEIPEGKPYWWAGMVSGVGKRVTKNGDPMAIVQLEDMEGEATVVVFP 1136 >gi|191638356|ref|YP_001987522.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus casei BL23] gi|190712658|emb|CAQ66664.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus casei BL23] gi|327382384|gb|AEA53860.1| DNA polymerase III [Lactobacillus casei LC2W] gi|327385585|gb|AEA57059.1| DNA polymerase III [Lactobacillus casei BD-II] Length = 1098 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 337/1038 (32%), Positives = 548/1038 (52%), Gaps = 79/1038 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L++++ + AIA+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q+ ID ++++ +GY +L+++ +++ L Sbjct: 62 LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLATS----- 99 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 +++ + GL+ +T S P A N A L + +YV L Sbjct: 100 --PVAFADLLPLTGLVAITLPDS-PFSAAVVANDHNRAVAFLQELDNKQPEAVYVGLD-- 154 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ + A + +L L+A N L+ D V+ A+ + ++ +D P +T Sbjct: 155 ---EAHLDTPLPTFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRD-PVLT 210 Query: 250 P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 +LK ++ + F + L A++N +IA + + P LP + Sbjct: 211 DAGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHY---------- 260 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVA 361 + ++L +K +LAQ +A +H Q Y+QRL +EL+VI +M F+ YFL+V Sbjct: 261 QTPDQLASKDYL---TKLAQEGLANRFHDQPIPTTYQQRLQYELDVIIKMGFADYFLVVW 317 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A K NI G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R MPD D+D Sbjct: 318 DVMNYAHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLD 377 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RR E+I+YV +KYG +AQIITFG+ AK A+RDV R M + + + IPN Sbjct: 378 IPDNRRGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPN 437 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540 + L+ D S+ + +AD +R+L + + LEGL RH STHAAGIV+ + PL+ Sbjct: 438 --LLHMDLKTAYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 V + + L TQ +E GL+K DFLGLK L +L + F+ + G D Sbjct: 496 DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPK 554 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D T L T G+FQ ES+G++ L ++P ED++A+ +LYRPGP++NI Sbjct: 555 QIPLNDQPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENID 614 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RKNG+E I P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K Sbjct: 615 TFIARKNGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSK 674 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+++++ A++ Sbjct: 675 KKSSVLAAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYL 734 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K H P F AA M M+N+ K++ + Q+A+ + ++ P +NT FK+ D +I + L Sbjct: 735 KVHDPAAFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGL 794 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++KG+ + I A + PF D R++ K L + L+ AGA D F +R Sbjct: 795 LSVKGMRRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRA 854 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS----DKITLEKFSVENSSVRFENE 955 Q + +LD + + + ++ G FS I + + + R E E Sbjct: 855 QTIANLDELINSVK------------LAGNDVGLFSVLAPKPIVVPEMP---AGERLEEE 899 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 VLG Y SGHP+D Y P+ + + V G + + +V ++ +T+ G + Sbjct: 900 ANVLGVYLSGHPVDKYAPLKTQYTLVNV---VDLAEGRTVDILLLVRHIKRIRTKTGKPM 956 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 957 AFVDGQDATGTVSLTVFP 974 >gi|57867208|ref|YP_188839.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis RP62A] gi|81819374|sp|Q5HNK2|DPO3A_STAEQ RecName: Full=DNA polymerase III subunit alpha gi|57637866|gb|AAW54654.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis RP62A] Length = 1065 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 348/1038 (33%), Positives = 553/1038 (53%), Gaps = 111/1038 (10%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H+S+ LL+ +L ++ ++DK + A+AITDTN L+ +F AA I PI G Sbjct: 4 HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I + D L T+ ++VL +G + L +L S + + + K+ V I Sbjct: 64 --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQLSSAIMM--RNKEEVPI- 107 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191 WL+ E LI++ F ++++ K+++ F+ LY+N + Sbjct: 108 -EWLKRYD-EHLIII-------------FKEAELSHKQVIDAFEG--KKELYLNHNSNNT 150 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248 R V ++ +L+E+D E L A+ +T ++ +K+ Sbjct: 151 LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191 Query: 249 TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302 T D + + E+ ++ +L E + N EI C + H +LP+F+ + Sbjct: 192 TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249 Query: 303 ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I + E EL +K Y RL E +I M F YFL Sbjct: 250 WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD Sbjct: 289 IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF RR++VI+YVQ+KYG V+ I+TFG L A+A RDVGR + + ++ + KL Sbjct: 349 DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+ ++L+ F+ + +R E+S+KLEGL RH STHAAGI+I D+P Sbjct: 409 IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597 L + P+ L TQ+ M E+ GL+K DFLGL+ L+++ Q L + +D Sbjct: 467 LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP+DD + + LL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ Sbjct: 525 IEAIPYDDKKVFDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y R++ ++ +HP ++P+LK T GVIIYQEQ+M IA ++G+S EAD+LRRAM Sbjct: 585 ISTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + ++ +++ FI GA NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y + Sbjct: 645 SKKNRAILESERQHFIDGAKNNGYDEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP F A ++ + + +K +A+ I I+PP++N +K + IY Sbjct: 705 YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 SL IKG+G + + I+ E + P+ DF R+ + NR++LESL+ GA D FG Sbjct: 765 SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LLQ++D + VE++ E +F + K + E+ + + E+ Sbjct: 825 TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015 LGFY S HP++ +K K Y G++ + + +Q +T+ G + Sbjct: 876 EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VT ++ + FP Sbjct: 930 AFVTMNDGRTMMDGVIFP 947 >gi|309790186|ref|ZP_07684758.1| DNA polymerase III, alpha subunit [Oscillochloris trichoides DG6] gi|308227771|gb|EFO81427.1| DNA polymerase III, alpha subunit [Oscillochloris trichoides DG6] Length = 1269 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 333/942 (35%), Positives = 513/942 (54%), Gaps = 41/942 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+G S I + A +IA+TD ++ A+EF A AGI+PI Sbjct: 4 FIHLHVHSEYSLLDGYASTKAIAGRAAELGMDSIALTDHGVMYGAMEFYDAAKKAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK--- 126 IG + + + T +G K F ++LL GY+ L+ L +R +L K Sbjct: 64 IGMEAYMAPGSRTEATTRGGKNYF----HLLLLAKNEVGYRNLVRLTTRAHLDGMAKGVF 119 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 RI L++ EGL++ + +G + + + A + ++ L G + ++ Sbjct: 120 ARPRIDRELLEQY-HEGLVVTSACIAGEVIQQLTAQQRKQAVETAAYYRDLLGAENYFLE 178 Query: 186 LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242 LQ H ++V++ +PLV TN++ F+ ED E +MA+ + + Sbjct: 179 LQLHENTPELEGINDELVRIGEELGIPLVVTNDTHFVRAEDVETQHRVMAMGMNMTHQEF 238 Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++ +++ + EM + F A LENT IA C+ L LP+F E Sbjct: 239 CNKGFKMDESYHIMSGEEMWAKFKRYGTAPLENTRRIADMCNLKLDFGRVQLPQFDLPEG 298 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D + LR GL R G +Y RLD EL+VI F Y LIV Sbjct: 299 HDAA----SYLRLVCEEGLMKR------CNGNPPANYIARLDDELDVINATGFPDYMLIV 348 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D++++A+ IP P RGS S+ Y L ITD+DP++ LLFERFL+ +R+ MPD D Sbjct: 349 WDYVKYARSRGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSRERLEMPDIDT 407 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RR E++ Y+ KYG E VAQIIT+G+L AKAALRD+GR L + S+VDR+ KLIP Sbjct: 408 DFADSRRGEILDYIAGKYGRENVAQIITYGTLGAKAALRDMGRVLGVELSEVDRVAKLIP 467 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P QA+ ++ P + +++ ++K+EG R+ THA G+V+ PL Sbjct: 468 SLPVGVTISQALERVPELKQIYTTQPHLAEVIDWAKKVEGRMRNVGTHACGVVVSRTPLE 527 Query: 541 QLVPMYRDVRSDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 ++VP+ R + + V F + K GL+K D LGL L+++ ++L+++ + G+K++L Sbjct: 528 EMVPLQRTTKDEHAVMASFEGPTLAKMGLLKMDILGLTNLSVVAEALNYIERSTGIKMEL 587 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP +D +T+ L T +FQLES+GM + L ++P ++D+ A+V+LYRPGP++ I Sbjct: 588 ADIPLEDKKTFEALGRGETKNVFQLESAGMTRYLMQLKPTRVDDLYAMVALYRPGPLEQI 647 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y KN I +HP++ P+L++T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A+ Sbjct: 648 PHYIQGKNDPANITYLHPILKPILEDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKAIS 707 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK KE M + +F G K GIS +A ++EL+ FA Y FN+ HA Y ++SYQTAW Sbjct: 708 KKNKELMAENGAKFKEGCLKKGISAQVADELWELILPFAGYSFNRPHATLYGLLSYQTAW 767 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831 +K +YPVE++AA +T +E + K + R+ + ++PP VN F++ Sbjct: 768 LKVNYPVEYMAAVLTGAGGVIEDVAKAALETRRLGVALLPPDVNHSQKGFEIEPIQGQLP 827 Query: 832 -----DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885 N I + LAAIK VG I+EA + F +LED C+RVD +N+RVLESL Sbjct: 828 NGVRYQNAIRFGLAAIKNVGEGPLDAILEARTEGGAFSTLEDLCARVDRNAINKRVLESL 887 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 + AGALD +R Q L LD A +K R ++F Sbjct: 888 IKAGALDSLPGTRRQKLTVLDQAISAATEAQKARDVGQASLF 929 >gi|227535154|ref|ZP_03965203.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187199|gb|EEI67266.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 1098 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 337/1038 (32%), Positives = 548/1038 (52%), Gaps = 79/1038 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L++++ + AIA+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q+ ID ++++ +GY +L+++ +++ L Sbjct: 62 LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLATS----- 99 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 +++ + GL+ +T S P A N A L + +YV L Sbjct: 100 --PVAFADLLPLTGLVAITLPDS-PFSAAVAANDHDRAVAFLQELDNKQPEAVYVGLD-- 154 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ + A + +L L+A N L+ D V+ A+ + ++ +D P +T Sbjct: 155 ---EAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRD-PVLT 210 Query: 250 P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 +LK ++ + F + L A++N +IA + + P LP + Sbjct: 211 DAGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHY---------- 260 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVA 361 + ++L +K +LAQ +A +H Q Y+QRL +EL+VI +M F+ YFL+V Sbjct: 261 QTPDQLASKDYL---TKLAQEGLANRFHDQPIPTTYQQRLQYELDVIIKMGFADYFLVVW 317 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A K NI G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R MPD D+D Sbjct: 318 DVMNYAHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLD 377 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RR E+I+YV +KYG +AQIITFG+ AK A+RDV R M + + + IPN Sbjct: 378 IPDNRRGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPN 437 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540 + L+ D S+ + +AD +R+L + + LEGL RH STHAAGIV+ + PL+ Sbjct: 438 --LLHMDLKTAYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 V + + L TQ +E GL+K DFLGLK L +L + F+ + G D Sbjct: 496 DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPK 554 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D T L T G+FQ ES+G++ L ++P ED++A+ +LYRPGP++NI Sbjct: 555 QIPLNDQPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENID 614 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RKNG+E I P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K Sbjct: 615 TFIARKNGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSK 674 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+++++ A++ Sbjct: 675 KKSSVLAAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYL 734 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K H P F AA M M+N+ K++ + Q+A+ + ++ P +NT FK+ D +I + L Sbjct: 735 KVHDPAAFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGL 794 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++KG+ + I A + PF D R++ K L + L+ AGA D F +R Sbjct: 795 LSVKGMRRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRA 854 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS----DKITLEKFSVENSSVRFENE 955 Q + +LD + + + ++ G FS I + + + R E E Sbjct: 855 QTIANLDELINSVK------------LAGNDVGLFSVLAPKPIVVPEMP---AGERLEEE 899 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 VLG Y SGHP+D Y P+ + + V G + + +V ++ +T+ G + Sbjct: 900 ANVLGVYLSGHPVDKYAPLKTQYTLVNV---VDLAEGRTVDILLLVRHIKRIRTKTGKPM 956 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 957 AFVDGQDATGTVSLTVFP 974 >gi|302531855|ref|ZP_07284197.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4] gi|302440750|gb|EFL12566.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4] Length = 1190 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 360/1087 (33%), Positives = 573/1087 (52%), Gaps = 83/1087 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL VH+ YS+L+GA + +L + QPAIA+TD + +A EF + A + + Sbjct: 2 SDSFVHLHVHTEYSMLDGAAKVKPLLAEAERLGQPAIAMTDHGTMSAAAEFYRVAKNSPV 61 Query: 68 QPIIGCQLDIDMQDNL--------KMTNQGKTPFP---------TVPSIVLLVSTAEGYQ 110 +PIIG + + + + + +G F + + + A+G + Sbjct: 62 KPIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGSGSYTHMTMWAENADGLR 121 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L+++ S + + + R+ + E G++ TG SG + + A + Sbjct: 122 NLLKM-SSLASFEGYYRKPRMDRDLIAE-NHRGIMATTGCPSGEVQTRLRLGQREQAIQA 179 Query: 171 LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 +K +FG D ++ L H +R ++++ +L VATN+S +++++ EAH Sbjct: 180 ASDYKDIFGADNFFLELMDHGLPIERSVREGLLEIGKLLDLKPVATNDSHYVTQDQAEAH 239 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQ 286 L+ V +S R + D Y +E + + D +P A +NT+ IA R +Q Sbjct: 240 SALLCVQAGKTLSDPTRFKFDGDGYYLKSAEAMREYWDKEVPGAAQNTLLIAER----VQ 295 Query: 287 VHAPI------LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 +A + +PRF E K E++ LR + + R G Q+Y+ R Sbjct: 296 SYADVFDFHDRMPRFPVPEG----KTEDDLLREEVEKFVPTRFPDGP------TQEYKDR 345 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 +D EL ++A+M FS YFL+V D ++WAK+ I VGPGRGS GS+ AY L ITD+DP+ Sbjct: 346 IDRELGIMAKMGFSAYFLVVGDLVRWAKEQRIRVGPGRGSATGSLVAYILHITDLDPIEH 405 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 SLLFERFLNP+R+S PD D+DF RR EV++Y +K+G E VAQ+ITFG+++ KAA++D Sbjct: 406 SLLFERFLNPERVSPPDIDLDFDDRRRGEVLQYTIDKWGAENVAQVITFGTIKTKAAIKD 465 Query: 461 VGRAL--QMPYSQVDRLCKLIPND-PAHPVSLQAIADD--------SRFREARLADPSVD 509 R Q +S D++ K +P A + L I D S R DP V Sbjct: 466 AARVHFGQPGFSIADKITKALPPPIAAQDIPLSGIFDPKHERYGEASEVRTLTETDPEVK 525 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGL 568 ++++ ++ LEGL R+A HA +++ PL ++P++R R D +T F+ E GL Sbjct: 526 QIMDTARGLEGLIRNAGVHACAVILSSEPLLDVIPLWR--RDDGATITGFDYPSCEDMGL 583 Query: 569 IKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 +K DFLGL TLT+++ ++ + G ++DL+ + DD +TY LL+ TLG+FQL+ + Sbjct: 584 LKMDFLGLSTLTIIEDTIQAVKDNHGREIDLATLALDDKKTYELLSRGDTLGVFQLDGAA 643 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPM 681 MR L M P DI A+++LYRPGP+ + + Y R NG++KI IHP ++P+ Sbjct: 644 MRSLLRAMAPTHFGDIAAVLALYRPGPMAANAHIDYAERSNGRQKISPIHPELKDALEPI 703 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L ET +++YQEQVM IAQ L+GY+L AD+LRRAMGKK KE ++K+ E+F G G Sbjct: 704 LGETYHLLVYQEQVMAIAQQLAGYTLGGADLLRRAMGKKKKEIIEKEFEKFREGMLGKGF 763 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S +++++ FA Y FNKSH A Y ++SY TA++K +YP EF+AA +T N +K Sbjct: 764 SAEACQTLWDVMLPFAGYAFNKSHTAGYGLVSYWTAYLKANYPAEFMAAQLTSNSGNKDK 823 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861 + + R+ I+++PP VN + F+ + I + L A++ VGT I++ +K Sbjct: 824 SAIYLAECRRMGIKVLPPCVNESNLRFRAVGSDIRFGLGAVRNVGTNVVDSIVKTRQEKG 883 Query: 862 -FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + DF + + N+RV ESL+ AGA D FG +R+ ++ + + +++ Sbjct: 884 LYTGFVDFLDKSELPVCNKRVTESLIKAGAFDAFGLTRLSMIAVHEEAVEAVVPLKRQEA 943 Query: 921 NKHENIFAHEKGTFSDKITLE-----------KFSVENSSVR--FENEQRVLGFYFSGHP 967 ++F GT D+ + E KF + + E+ +LG Y S HP Sbjct: 944 MGQFDLF----GTGGDESSAEVAAASSPLAHVKFGPDEYPRKQLLAYERDMLGLYVSAHP 999 Query: 968 LDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 LD + ILR+ K V + I L+ M+ S ++ +KG V + Sbjct: 1000 LDGAERILRQHAPKPIAVLVDDAPKEGEIVLSGMISSVDRRVNKKGEPWAIVVVEDLDAS 1059 Query: 1027 YEANFFP 1033 E FFP Sbjct: 1060 MEVLFFP 1066 >gi|293366351|ref|ZP_06613030.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|291319476|gb|EFE59843.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|329733734|gb|EGG70060.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis VCU045] Length = 1065 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 346/1038 (33%), Positives = 551/1038 (53%), Gaps = 111/1038 (10%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H+S+ LL+ +L ++ ++DK + A+AITDTN L+ +F AA I PI G Sbjct: 4 HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I + D L + V+L +G + L ++ S + + + K+ V I Sbjct: 64 --MTIYLTDGL-----------YIIETVVLAKNNQGLKSLYQISSAIMM--RNKEEVPI- 107 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191 WL+ E LI++ F ++++ K+++ F+ LY+N + Sbjct: 108 -EWLKRY-EEHLIII-------------FKEAELSHKQIIDAFEG--KKELYLNHNSNNT 150 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248 R V ++ +L+E+D E L A+ +T ++ +K+ Sbjct: 151 LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191 Query: 249 TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302 T D + + E+ ++ +L E + N EI C + H +LP+F+ + Sbjct: 192 TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249 Query: 303 ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I + E EL +K Y RL E +I M F YFL Sbjct: 250 WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD Sbjct: 289 IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF RR++VI+YVQ+KYG V+ I+TFG L A+A RDVGR + + ++ + KL Sbjct: 349 DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+ ++L+ F+ + +R E+S+KLEGL RH STHAAGI+I D+P Sbjct: 409 IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597 L + P+ L TQ+ M E+ GL+K DFLGL+ L+++ Q L + +D Sbjct: 467 LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP+DD + + LL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ Sbjct: 525 IEAIPYDDKKVFDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y R++ ++ +HP ++P+LK T GVIIYQEQ+M IA ++G+S EAD+LRRAM Sbjct: 585 IPTYITRRHNPNQVTYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + ++ +++ FI GA NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y + Sbjct: 645 SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP F A ++ + + +K +A+ I I+PP++N +K + IY Sbjct: 705 YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 SL IKG+G + + I+ E + P+ DF R+ + NR++LESL+ GA D FG Sbjct: 765 SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LLQ++D + VE++ E +F + K + E+ + + E+ Sbjct: 825 TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015 LGFY S HP++ +K K Y G++ + + +Q +T+ G + Sbjct: 876 EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VT ++ + FP Sbjct: 930 AFVTMNDGRTMMDGVIFP 947 >gi|67921905|ref|ZP_00515421.1| DNA polymerase III alpha subunit:Protein splicing (intein) site [Crocosphaera watsonii WH 8501] gi|67856121|gb|EAM51364.1| DNA polymerase III alpha subunit:Protein splicing (intein) site [Crocosphaera watsonii WH 8501] Length = 880 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 321/827 (38%), Positives = 485/827 (58%), Gaps = 82/827 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA LN ++D+ + PAIA+TD ++ A+E + I+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLNALIDRALELEMPAIALTDHGVMYGAIELIKVCRNKSIKP 61 Query: 70 IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 IIG ++ DI + K +Q V+L +GY+ L++L + +L + Sbjct: 62 IIGNEMYVINGDIKEKKKYKKYHQ-----------VVLAKNTQGYKNLVKLTTISHL--E 108 Query: 125 GKQS----VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFF---FNSSQVAEKRLLTFKK 176 G Q R C++ L E EGLI+ + G I + F ++ KR ++K Sbjct: 109 GMQGKGIFARPCINKELLEEYHEGLIVTSACLGGEIPQRLLAGDFKEAKAVAKR---YQK 165 Query: 177 LFGDRLYVNLQRHRGY--DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 LF D Y+ +Q H GY DR + + ++A ++ +VATN+S F+S D EAHD L+ + Sbjct: 166 LFKDDFYLEIQDH-GYVQDRIVNTGIAKIARDLDIKIVATNDSHFISCYDVEAHDALLCI 224 Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVH 288 +++ + R R + YLK+ EM +F D LP EA+ NT+E+A + + Sbjct: 225 QTRKLITDEKRLRYSGTEYLKSADEMRLLFRDHLPDEIIEEAINNTLEVAEKIEPYKILG 284 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 P +P + + ++ + A GL RL ++ DYR+RL++EL ++ Sbjct: 285 EPRIPNYPVPAGHN----PDSFVEEIAWDGLLTRLK--CRSRSEIPDDYRERLEYELKML 338 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 RM FS YFL+V D+I++A+ N IPVGPGRGS AGS+ AY L IT+IDP+ LLFERFL Sbjct: 339 QRMGFSTYFLVVWDYIKYARDNGIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFL 398 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R SMPD D DFC +RRDE+I+YV KYG VAQIITF + +KA L+DV R L +P Sbjct: 399 NPERKSMPDVDTDFCIERRDEMIQYVTRKYGEANVAQIITFNRMTSKAVLKDVARVLNIP 458 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRH 524 Y++ D++ K+IP P L+ + D F+E DP+V R ++++ ++EG + Sbjct: 459 YAESDKMTKMIPVSRGKPAKLKVMVSDKTPTPEFKERYDNDPTVHRWVDMAIRIEGTNKT 518 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HAAG+VI PL Q+VP+ ++ + +TQ+ M+ +E GL+K DFLGL+ LT +Q+ Sbjct: 519 FGVHAAGVVISSEPLDQVVPLQKNNDGAV-ITQYYMEDLESLGLLKMDFLGLRNLTTIQR 577 Query: 585 SLDFLAQ-RGVKVDLSLIPFDD-------------------HETYHLLTTKGTLGIFQLE 624 + D + Q + V++DL +P D+ +TY LL GIFQLE Sbjct: 578 TADLIKQNKRVELDLDQLPLDERKALEIIAKGTEKRLPPDVQKTYKLLEKGDLEGIFQLE 637 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPML 682 SSGM++ ++ ++P IEDI ++++LYRPGP+D ++ + NRK+G+E IV H L++P+L Sbjct: 638 SSGMKEIVKNLKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGREDIVYQHKLLEPIL 697 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 KET V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK EM K +E FI G++KNG+S Sbjct: 698 KETYAVLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMTKHREIFIDGSTKNGVS 757 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + IA ++FE + KFA+Y +SY T + Y ++ Sbjct: 758 QAIAEDLFEQMIKFAEY-----------CLSYDTEILTVEYGAMYIG 793 >gi|329724716|gb|EGG61222.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis VCU144] Length = 1065 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 347/1038 (33%), Positives = 553/1038 (53%), Gaps = 111/1038 (10%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H+S+ LL+ +L ++ ++DK + A+AITDTN L+ +F AA I PI G Sbjct: 4 HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I + D L T+ ++VL +G + L ++ S + + + K+ V I Sbjct: 64 --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQISSAIMM--RNKEEVPI- 107 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191 WL+ E LI++ F ++++ K+++ F+ LY+N + Sbjct: 108 -EWLKRYD-EHLIII-------------FKEAELSHKQIIDAFEG--KKELYLNHNSNNT 150 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248 R V ++ +L+E+D E L A+ +T ++ +K+ Sbjct: 151 LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191 Query: 249 TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302 T D + + E+ ++ +L E + N EI C + H +LP+F+ + Sbjct: 192 TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249 Query: 303 ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I + E EL +K Y RL E +I M F YFL Sbjct: 250 WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD Sbjct: 289 IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF RR++VI+YVQ+KYG V+ I+TFG L A+A RDVGR + + ++ + KL Sbjct: 349 DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+ ++L+ F+ + +R E+S+KLEGL RH STHAAGI+I D+P Sbjct: 409 IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597 L + P+ L TQ+ M E+ GL+K DFLGL+ L+++ Q L + +D Sbjct: 467 LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP+DD + + LL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ Sbjct: 525 IEAIPYDDKKVFDLLSNGNTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y R++ ++ +HP ++P+LK T GVIIYQEQ+M IA ++G+S EAD+LRRAM Sbjct: 585 IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + ++ +++ FI GA NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y + Sbjct: 645 SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP F A ++ + + +K +A+ I I+PP++N +K + IY Sbjct: 705 YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 SL IKG+G + + I+ E + P+ DF R+ + NR++LESL+ GA D FG Sbjct: 765 SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LLQ++D + VE++ E +F + K + E+ + + E+ Sbjct: 825 TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015 LGFY S HP++ +K K Y G++ + + +Q +T+ G + Sbjct: 876 EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VT ++ + FP Sbjct: 930 AFVTMNDGRTMMDGVIFP 947 >gi|251811096|ref|ZP_04825569.1| DNA polymerase III alpha chain [Staphylococcus epidermidis BCM-HMP0060] gi|251805393|gb|EES58050.1| DNA polymerase III alpha chain [Staphylococcus epidermidis BCM-HMP0060] Length = 1065 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 348/1038 (33%), Positives = 553/1038 (53%), Gaps = 111/1038 (10%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H+S+ LL+ +L ++ ++DK + A+AITDTN L+ +F AA I PI G Sbjct: 4 HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I + D L T+ ++VL +G + L +L S + + + K+ V I Sbjct: 64 --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQLSSAIMM--RNKEEVPI- 107 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191 WL+ E LI++ F ++++ K+++ F+ LY+N + Sbjct: 108 -EWLKRYD-EHLIII-------------FKEAELSHKQVIDAFEG--KKELYLNHNSNNT 150 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248 R V ++ +L+E+D E L A+ +T ++ +K+ Sbjct: 151 LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191 Query: 249 TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302 T D + + E+ ++ +L E + N EI C + H +LP+F+ + Sbjct: 192 TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249 Query: 303 ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I + E EL +K Y RL E +I M F YFL Sbjct: 250 WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD Sbjct: 289 IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF RR++VI+YVQ+KYG V+ I+TFG L A+A RDVGR + + ++ + KL Sbjct: 349 DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+ ++L+ F+ + +R E+S+KLEGL RH STHAAGI+I D+P Sbjct: 409 IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597 L + P+ L TQ+ M E+ GL+K DFLGL+ L+++ Q L + +D Sbjct: 467 LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP+DD + + LL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ Sbjct: 525 IEAIPYDDKKVFDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y R++ ++ +HP ++P+LK T GVIIYQEQ+M IA ++G+S EAD+LRRAM Sbjct: 585 IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + ++ +++ FI GA NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y + Sbjct: 645 SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP F A ++ + + +K +A+ I I+PP++N +K + IY Sbjct: 705 YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 SL IKG+G + + I+ E + P+ DF R+ + NR++LESL+ GA D FG Sbjct: 765 SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LLQ++D + VE++ E +F + K + E+ + + E+ Sbjct: 825 TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDCEK 875 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015 LGFY S HP++ +K K Y G++ + + +Q +T+ G + Sbjct: 876 EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VT ++ + FP Sbjct: 930 AFVTMNDGRTMMDGVIFP 947 >gi|329737251|gb|EGG73505.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis VCU028] Length = 1065 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 346/1038 (33%), Positives = 551/1038 (53%), Gaps = 111/1038 (10%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H+S+ LL+ +L ++ ++DK + A+AITDTN L+ +F AA I PI G Sbjct: 4 HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I + D L + V+L +G + L ++ S + + + K+ V I Sbjct: 64 --MTIYLTDGL-----------YIIETVVLAKNNQGLKSLYQISSAIMM--RNKEEVPI- 107 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191 WL+ E LI++ F ++++ K+++ F+ LY+N + Sbjct: 108 -EWLKRY-EEHLIII-------------FKEAELSHKQIIDAFEG--KKELYLNHNSNNT 150 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248 R V ++ +L+E+D E L A+ +T ++ +K+ Sbjct: 151 LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191 Query: 249 TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302 T D + + E+ ++ +L E + N EI C + H +LP+F+ + Sbjct: 192 TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249 Query: 303 ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I + E EL +K Y RL E +I M F YFL Sbjct: 250 WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD Sbjct: 289 IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF RR++VI+YVQ+KYG V+ I+TFG L A+A RDVGR + + ++ + KL Sbjct: 349 DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+ ++L+ F+ + +R E+S+KLEGL RH STHAAGI+I D+P Sbjct: 409 IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597 L + P+ L TQ+ M E+ GL+K DFLGL+ L+++ Q L + +D Sbjct: 467 LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP+DD + + LL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ Sbjct: 525 IEAIPYDDKKVFDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y R++ ++ +HP ++P+LK T GVIIYQEQ+M IA ++G+S EAD+LRRAM Sbjct: 585 IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + ++ +++ FI GA NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y + Sbjct: 645 SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP F A ++ + + +K +A+ I I+PP++N +K + IY Sbjct: 705 YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 SL IKG+G + + I+ E + P+ DF R+ + NR++LESL+ GA D FG Sbjct: 765 SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LLQ++D + VE++ E +F + K + E+ + + E+ Sbjct: 825 TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015 LGFY S HP++ +K K Y G++ + + +Q +T+ G + Sbjct: 876 EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VT ++ + FP Sbjct: 930 AFVTMNDGRTMMDGVIFP 947 >gi|27468296|ref|NP_764933.1| DNA polymerase III alpha chain [Staphylococcus epidermidis ATCC 12228] gi|38604815|sp|Q8CNX0|DPO3A_STAES RecName: Full=DNA polymerase III subunit alpha gi|27315842|gb|AAO04977.1|AE016748_211 DNA polymerase III alpha chain [Staphylococcus epidermidis ATCC 12228] Length = 1065 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 347/1038 (33%), Positives = 553/1038 (53%), Gaps = 111/1038 (10%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H+S+ LL+ +L ++ ++DK + A+AITDTN L+ +F AA I PI G Sbjct: 4 HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I + D L T+ ++VL +G + L ++ S + + + K+ V I Sbjct: 64 --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQISSAIMM--RNKEEVPI- 107 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191 WL+ E LI++ F ++++ K+++ F+ LY+N + Sbjct: 108 -EWLKRYD-EHLIII-------------FKEAELSHKQIIDAFEG--KKELYLNHNSNNT 150 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248 R V ++ +L+E+D E L A+ +T ++ +K+ Sbjct: 151 LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191 Query: 249 TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302 T D + + E+ ++ +L E + N EI C + H +LP+F+ + Sbjct: 192 TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249 Query: 303 ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I + E EL +K Y RL E +I M F YFL Sbjct: 250 WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD Sbjct: 289 IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF RR++VI+YVQ+KYG V+ I+TFG L A+A RDVGR + + ++ + KL Sbjct: 349 DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+ ++L+ F+ + +R E+S+KLEGL RH STHAAGI+I D+P Sbjct: 409 IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597 L + P+ L TQ+ M E+ GL+K DFLGL+ L+++ Q L + +D Sbjct: 467 LFKFAPLTTGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP+DD + + LL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ Sbjct: 525 IEAIPYDDKKVFDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y R++ ++ +HP ++P+LK T GVIIYQEQ+M IA ++G+S EAD+LRRAM Sbjct: 585 IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + ++ +++ FI GA NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y + Sbjct: 645 SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP F A ++ + + +K +A+ I I+PP++N +K + IY Sbjct: 705 YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 SL IKG+G + + I+ E + P+ DF R+ + NR++LESL+ GA D FG Sbjct: 765 SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LLQ++D + VE++ E +F + K + E+ + + E+ Sbjct: 825 TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDYEK 875 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015 LGFY S HP++ +K K Y G++ + + +Q +T+ G + Sbjct: 876 EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VT ++ + FP Sbjct: 930 AFVTMNDGRTMMDGVIFP 947 >gi|73662373|ref|YP_301154.1| DNA polymerase III alpha chain [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494888|dbj|BAE18209.1| DNA polymerase III alpha chain [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1067 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 344/1027 (33%), Positives = 554/1027 (53%), Gaps = 86/1027 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H++Y LL ++ + +++ K A + A+AITDTN L+ +F AA I PI G Sbjct: 4 HLNIHTTYDLLNSSIRIKDVVAKAAQEGYTALAITDTNVLYGLPQFYDACIAANIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I++ D L ++L G + L +L S + + K+ V Sbjct: 64 --MTINLTDGLSEL-----------ETIVLAQNNLGLKDLFKLSSAIKM----KEKVETP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 + WL++ + +I+ F N ++ E + F + ++VN Sbjct: 107 IEWLKKYESHFVII-------------FKNVTESHEAIISNFSE--HAHVFVN------- 144 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 +S+V T +LP+V ++ +L+ +D D L A+A S+ D D+ Sbjct: 145 ---HKSKV-----TFDLPIVWAQSTRYLNSQD---SDTLSAMAAIKENSKLDLVSEQTDY 193 Query: 253 --YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE-- 308 +L + E+ + D E T ++ C + H +LP++ + + Q+ + Sbjct: 194 NEHLYSNVELQGLSID-DAVWEQTNQLETLCQAEMIYHQSLLPKY---KTPNQQQSDAFL 249 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 +L + L + L + + Y+ RL+ E +I +M F YFLIV+D IQ+AK Sbjct: 250 WQLLADNLQQLNLPLNKKEL--------YQTRLEHEYQIITKMGFEDYFLIVSDLIQYAK 301 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N++ VGPGRGS AGS+ +Y L IT IDP+ ++LLFERFLNP+R++MPD DIDF RD Sbjct: 302 NNDVLVGPGRGSAAGSLVSYLLNITTIDPIEYNLLFERFLNPERVTMPDIDIDFEDTHRD 361 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +VI+YVQ KYG VA I+TFG L A+A RDVGR + ++ + KLIP+ ++ Sbjct: 362 KVIQYVQEKYGETHVAGIVTFGHLLARAVARDVGRIMGFEEITLNEISKLIPHKLG--IT 419 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 L F++ + +R +I +KLEGL RH STHAAGI+I D PL + P+ Sbjct: 420 LDDAYSQEPFKQFVHRNHRHERWFDICKKLEGLPRHTSTHAAGIIINDHPLYEYAPL--T 477 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHE 607 + +TQ+ M E+ GL+K DFLGL+ L+++ + + + + VD+ IPFDD Sbjct: 478 LGDTGLLTQWTMTESERIGLLKIDFLGLRNLSIIHQIVKQVKHDLNIDVDIEQIPFDDEN 537 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 +HLL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ I Y +R++ Sbjct: 538 VFHLLSQGDTTGIFQLESDGIRNVLKKLQPEHFEDIVAVTSLYRPGPMEEIPTYISRRHH 597 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 EK+ +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ Sbjct: 598 PEKVQYLHPDLEPILKTTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLES 657 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F++GA KNG + ++ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HY F Sbjct: 658 ERQHFVNGALKNGYDENLSKQIFDLILKFADYGFARAHAVSYSKIAYIMSYLKVHYANYF 717 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A ++ + + +K + +A+ I I+PP++N +K IY S+ AIKGVG Sbjct: 718 YANILSNAIGSEKKTAQMIDEAKHQKINILPPNINYSHWFYKATKKGIYLSIGAIKGVGY 777 Query: 848 TTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + + I+E A+ + DF R+ + R++LESL+ GA D FG +R LL ++D Sbjct: 778 QSVKLIVEERKANGFYKDFFDFTRRIPKRIKTRKLLESLILVGAFDTFGKNRATLLNAID 837 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + +E++ IF + K + E+ V E E+ LGFY S H Sbjct: 838 QVLDDISDIEQDGF-----IF----DVLTPKASYEEKEELPDHVLSEYEKEYLGFYVSTH 888 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 P++ K +K + Y+ + A +N + V ++ +T+ G + +VT ++ Sbjct: 889 PVE--KAFEQKQYLGIYKLANAQ---DNKPIFVQVDQFKRIRTKNGQNMAFVTLNDGINN 943 Query: 1027 YEANFFP 1033 + FP Sbjct: 944 LDGVVFP 950 >gi|223985834|ref|ZP_03635875.1| hypothetical protein HOLDEFILI_03181 [Holdemania filiformis DSM 12042] gi|223962224|gb|EEF66695.1| hypothetical protein HOLDEFILI_03181 [Holdemania filiformis DSM 12042] Length = 1008 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 354/1000 (35%), Positives = 537/1000 (53%), Gaps = 88/1000 (8%) Query: 43 AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102 AIA TD N + A+EF + I+PI G ++ + +++ TV ++ +L Sbjct: 15 AIACTDENVMHGAMEFWKCCQREQIKPIFGLEILVKIEEE------------TV-AMTVL 61 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 EG+ L+ SR L G+ + + L +Q E +++ G G F Sbjct: 62 ARDDEGFGGLMAASSR---LCDGQDA--LTLDQIQPY-LEHWVLIVYGEGG------FAE 109 Query: 163 SSQVAEKRLLTFKKLFGDRL-YVNLQ----------RHRGYDRYRESQVVQLAYTHELPL 211 S + E R + GD+L ++ Q + + + + Q+ E+P Sbjct: 110 SELIQEDR-----RGLGDKLGWLKTQLPLFYMAVSFNDASFWKLKNILLKQVCAAQEIPT 164 Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271 VA + + ED ++ + S ++ K P V YL+ +EM ++ E L Sbjct: 165 VALSKIYYGQAEDARLFKIVNGIRLSKTINDKTLPSVN-GRYLRTPAEMEQLYD--AEDL 221 Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331 + + IA C+ + LP F C ++ L +AGL+ R QG Sbjct: 222 QASDHIASICNVTMTQAKTTLPAF---PCPQGVSSKQY-LTQLCLAGLKKR-RQG----- 271 Query: 332 YHAQD--YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 +D Y +RL +EL+VI M F YFLIV DFI++A+K I VGPGRGS AGS+ AY Sbjct: 272 -QPEDPAYLRRLKYELDVILTMHFEDYFLIVWDFIRFARKAGIYVGPGRGSAAGSLVAYV 330 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L IT +DPL + LLFERFLNP+R+SMPD D DF +RRDEVI+YV KYG + VA I TF Sbjct: 331 LGITHVDPLEYGLLFERFLNPERISMPDIDTDFPDNRRDEVIQYVAEKYGEKHVAHIATF 390 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSV 508 G+L AK LRDVGR L++P +VD LCK +P ++LQ AI + RF + AD Sbjct: 391 GTLGAKQVLRDVGRVLEIPLREVDMLCKAVPF--GVKMTLQTAIQQNPRFHQMVYADRRY 448 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 L E + ++EGL RH STHAAGIV L Q+ P R + +DL TQ+ M+ +E+ GL Sbjct: 449 QELYETALRIEGLPRHVSTHAAGIVFSRAELDQICPTIR-IENDLLSTQYTMEHLEELGL 507 Query: 569 IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 IK DFLGL+ LT++ + + QR +++ IP DD +TY LL T+GIFQLES GM Sbjct: 508 IKMDFLGLRNLTIIDDIVQRVHQRQ-PLNIMKIPLDDAKTYALLRKVDTVGIFQLESEGM 566 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 + + MQP C +DI+A ++L+RPGP++NI Y + + +HP + P+L+ T GV Sbjct: 567 KNLIRKMQPACFDDIVATIALFRPGPMENIPEYLRCRTDPSAVHYLHPDLKPILESTYGV 626 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 +IYQEQ+MQ AQ ++G+SL+ ADVLRRAM KK +E+ ++ FI G + G + +A Sbjct: 627 MIYQEQIMQTAQKMAGFSLARADVLRRAMSKKKLKELQSLQKEFIGGCIQQGYEEKLANE 686 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++EL+ KFA+YGFNKSH+ AY +++YQ +++K ++P+EF + + + K ++ + Sbjct: 687 VYELILKFANYGFNKSHSVAYGLLAYQLSYLKANFPLEFYTSLLNSVIGAEGKTAEYIDE 746 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLED 867 R+ +QI+ PSVN V + + I Y L IK +G+ ++ E + PF D Sbjct: 747 CRRHQVQILGPSVNASDVRYLIEGEAIRYPLLGIKNIGSAACMQLLAERQENGPFQDYYD 806 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +R+ +++LNR+++E+L+ AGALD F +R L SL+ Y V + I Sbjct: 807 FVTRMLTRRLNRKMIEALIDAGALDEFHANRQSLRLSLEEAISYGDLV-RIEVGGQVRI- 864 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP-LDVYK-------PILRKMG 979 + G S + + + E+ R E E+ LGFY HP L V K P++R M Sbjct: 865 --DLGLVSKPVMV--MAKEDPIERSEREREALGFYLCSHPILQVKKKFQIQTEPLVRLMA 920 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G+ E ++ +Q +T+KG + + Sbjct: 921 KGGFIEGFVYLQ-----------RVRQHRTKKGDLMAFAV 949 >gi|289550541|ref|YP_003471445.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|289180073|gb|ADC87318.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis HKU09-01] Length = 1064 Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust. Identities = 344/1025 (33%), Positives = 541/1025 (52%), Gaps = 83/1025 (8%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL +H+SY LL +L + +++ K + A+AITDTN L+ +F +A I+PI Sbjct: 3 VHLNIHTSYDLLNSSLKIEDVVAKASKQGYTALAITDTNVLYGYPKFYDACVSANIKPIF 62 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G + + + D L VL EG + +L S + + D+ + Sbjct: 63 G--MTVYITDGLSSV-----------EAVLYALNNEGLTAMYQLSSAIKMKDKS----LV 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRHR 190 W+ + + I+ QV +K +K D +YVN Sbjct: 106 PFEWITKYQSNIAIVF----------------KQVEQKHGHILEKFLNDEFIYVNSDSKN 149 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 + LP V + +L++ D + L A+ + + + Sbjct: 150 DFG---------------LPRVWLRTARYLNDNDADTIAALQAIKLNEKLDLVNEMDNLN 194 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +H+L+ SE+ + E T +A +C+ +Q H +LP+F K D+ Sbjct: 195 EHFLE-ASELDELTVS-QEEWAQTQALAEKCNAEIQYHQSLLPQF--KTPDN-------- 242 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 + + A L +L Q + ++Y RL+ E +I M F YFLIV+D I +AK + Sbjct: 243 --SSSKAYLWKQLVQRLKTLQLNQKNYIDRLNHEFKIITNMGFEDYFLIVSDLIHYAKTH 300 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 ++ VGPGRGS AGS+ +Y L IT IDP++++LLFERFLNP+R++MPD DIDF RR+ V Sbjct: 301 DVMVGPGRGSSAGSLVSYLLGITTIDPIKYNLLFERFLNPERVTMPDIDIDFEDTRRERV 360 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I YVQ KYG V+ I+TFG L A+A RDVGR + + + KLIP+ ++L Sbjct: 361 IEYVQQKYGEYHVSGIVTFGHLLARAVARDVGRIMGFDEITLAEISKLIPHQLG--ITLN 418 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 D+ +F++ + ++ E+ +KLEGL RH STHAAGI+I D+PL VP+ + Sbjct: 419 QAYDNDKFKDFVHRNYRHEKWFELCKKLEGLPRHTSTHAAGIIINDQPLFNFVPL--TIG 476 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609 +TQ+ M E+ GL+K DFLGL+ L+++ + + + V++D+ IPFDD + + Sbjct: 477 DTGLLTQWTMTEAERLGLLKIDFLGLRNLSIIHQIVTQVKYDLNVEIDIEAIPFDDPKVF 536 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL+ T GIFQLES G+R L+ ++P EDI+A+ SLYRPGP++ I Y R++ Sbjct: 537 ALLSQGETTGIFQLESEGVRHVLQRLKPQHFEDIVAVTSLYRPGPMEEIPTYITRRHEPS 596 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 K+ +HP ++P+LK T GVIIYQEQ+MQIA +G+S EAD+LRRAM KK + ++ ++ Sbjct: 597 KVAYLHPDLEPILKSTYGVIIYQEQIMQIASRFAGFSYGEADILRRAMSKKNRAVLENER 656 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A Sbjct: 657 QHFVEGAQRNGYEEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYA 716 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 ++ + N +K ++A+ I I+PP +N +K IY SL AIKGVG + Sbjct: 717 NILSNVVGNEQKTAAIIEEAKIQGIAILPPHINHSHWFYKATPQGIYLSLGAIKGVGYQS 776 Query: 850 ARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 + I+ ++ F S +DF R+ + R++LESL+ GA D G++R LQ +D Sbjct: 777 VKTIVNNRKEQGNFKSFKDFSKRIPKRIKTRKLLESLILVGAFDSLGHNRATSLQMIDE- 835 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 + T+ +IF T D+I E+ N E+ LGFY S HP+ Sbjct: 836 ------AVDDITHVGLDIFDIAGMTPKDEI--EEREELNDLQLSTYEKEYLGFYISQHPV 887 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + K RK + Y + A N+ + +Q +T+KG ++ +V ++ K + Sbjct: 888 E--KMFHRKQFLGIYTLANA---ANHQPILVQFDQIKQIRTKKGQQMAFVVVNDGIKVID 942 Query: 1029 ANFFP 1033 FP Sbjct: 943 GVIFP 947 >gi|254556764|ref|YP_003063181.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum JDM1] gi|254045691|gb|ACT62484.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum JDM1] Length = 1116 Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust. Identities = 339/1029 (32%), Positives = 551/1029 (53%), Gaps = 45/1029 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V LQV S++SLL +++ ++ +A+TD + ++ ++F A I PI Sbjct: 4 YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSTLALTDVDIMYGIVDFYNACRQAEITPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G L++ G+ S+V+L GYQ L+ L + S+ Sbjct: 64 LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 L +L L++LT + N+++ A + T ++ LY+ + Sbjct: 114 AVLPYLNH-----LMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 + + + A H+LP+VA + ++ +DY A VL A+ + Q + + + Sbjct: 169 QA--PALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HYL+ + + + + L L V + QV + + + Sbjct: 227 EGSHYLRPANTVTADYEQL--GLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPAN 284 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR AGL RLA AI Q Y+ RLD EL VI +M F YFLIV D + +A Sbjct: 285 VYLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN R +MPD D+D +RR+ Sbjct: 343 EAQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRRE 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR + ++ IPN H Sbjct: 403 QVLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQ-LHITL 461 Query: 489 LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 QA R + +AD S ++LL E +++LEGL RH STHAAG+V+ +PL Q+VP+ Sbjct: 462 DQAYQGSQRLQNL-VADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQA 520 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 + + +TQ+ +E GL+K DFLGL+ L+L+ +L ++ Q G + ++ I +D Sbjct: 521 GSET-MMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDP 579 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T L T G+FQ ES+G+R L + PD E + A+ +LYRPGP++NI + RK Sbjct: 580 ATLKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKQ 639 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+E + + P+L T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK + +D Sbjct: 640 GQEPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVID 699 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +++FI+GA +NG S+ +A +++ + +FA+YGFN+SHA AY+ ++++ A++K HY Sbjct: 700 KMRQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGA 759 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F + M + N K+K++ +ARQ + I+PP +N F I + L++IKG+ Sbjct: 760 FFTSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLR 819 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 ++ E A+ PF SL+ F R+D+K L ++++L++AGA D FG +R +LL S+ Sbjct: 820 RDFIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSV 879 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + A+ + + +F + + KI +K + R E LG Y SG Sbjct: 880 PELMSSAELAGGSMS-----LFE----SLAPKI--KKQPELSLGERLAKEAEYLGVYVSG 928 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPA 1024 HP++ Y + ++ + + V+T+ + ++K + +T++G + + T S+ + Sbjct: 929 HPVETYDWLAQQR----HTQLVSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLS 984 Query: 1025 KEYEANFFP 1033 E + FP Sbjct: 985 GEIDLTIFP 993 >gi|116494849|ref|YP_806583.1| DNA polymerase III, alpha subunit [Lactobacillus casei ATCC 334] gi|116104999|gb|ABJ70141.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus casei ATCC 334] Length = 1098 Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust. Identities = 336/1038 (32%), Positives = 547/1038 (52%), Gaps = 79/1038 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L++++ + AIA+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q+ ID ++++ +GY +L+++ +++ L Sbjct: 62 LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLATS----- 99 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 +++ + GL+ +T S P A N A L + +YV L Sbjct: 100 --PVAFADLLPLTGLVAITLPDS-PFSAAVVANEHDRAVAFLQELDNKQPEAVYVGLD-- 154 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ + A + +L L+A N L+ D V+ A+ + ++ +D P +T Sbjct: 155 ---EAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRD-PVLT 210 Query: 250 P--DHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 +LK ++ + F + L A++N +IA + + P LP + Sbjct: 211 DAGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHY---------- 260 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVA 361 + ++L +K +LAQ +A +H Q Y+QRL +EL+VI +M F+ YFL+V Sbjct: 261 QTPDQLASKDYL---TKLAQEGLANRFHDQPIPTTYQQRLQYELDVIIKMGFADYFLVVW 317 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A K NI G GRGS GS+ +YAL IT++DP+ + LLFERFLNP R MPD D+D Sbjct: 318 DVMNYAHKVNIMTGAGRGSATGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLD 377 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RR E+I+YV +KYG +AQIITFG+ AK A+RDV R M + + + IPN Sbjct: 378 IPDNRRGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPN 437 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540 + L+ D S+ + +AD +R+L + + LEGL RH STHAAGIV+ + PL+ Sbjct: 438 --LLHMDLKTAYDQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLT 495 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 V + + L TQ +E GL+K DFLGLK L +L + F+ + G D Sbjct: 496 DTVAL-QPSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPK 554 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D T L T G+FQ ES+G++ L ++P ED++A+ +LYRPGP++NI Sbjct: 555 QIPLNDQPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENID 614 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RKNG+E I P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM K Sbjct: 615 TFIARKNGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSK 674 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+++++ A++ Sbjct: 675 KKSSVLAAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYL 734 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K H P F AA M M+N+ K++ + Q+A+ + ++ P +NT FK+ D +I + L Sbjct: 735 KVHDPAAFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGL 794 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++KG+ + I A + PF D R++ K L + L+ AGA D F +R Sbjct: 795 LSVKGMRRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRA 854 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS----DKITLEKFSVENSSVRFENE 955 Q + +LD + + + ++ G FS I + + + R E E Sbjct: 855 QTIANLDELINSVK------------LAGNDVGLFSVLAPKPIVVPEMP---AGERLEEE 899 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 VLG Y SGHP+D Y P+ + + V G + + +V ++ +T+ G + Sbjct: 900 ANVLGVYLSGHPVDKYAPLKTQYTLVNV---VDLAEGRTVDILLLVRHIKRIRTKTGKPM 956 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 957 AFVDGQDATGTVSLTVFP 974 >gi|257055090|ref|YP_003132922.1| DNA polymerase III subunit alpha [Saccharomonospora viridis DSM 43017] gi|256584962|gb|ACU96095.1| DNA polymerase III, alpha subunit [Saccharomonospora viridis DSM 43017] Length = 1193 Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust. Identities = 370/1079 (34%), Positives = 573/1079 (53%), Gaps = 69/1079 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA + + ++ + PA+ +TD N++ A +F Q+A AGI+P Sbjct: 5 SFVHLHVHTEYSMLDGAAKIAPLFEEASRLGMPAVGMTDHGNMYGADDFYQQAKKAGIKP 64 Query: 70 IIGCQLDIDMQDNLKM-------TNQGKT----------PFPTVPSIVLLVSTAEGYQRL 112 IIG + + + T Q T + +L A G + L Sbjct: 65 IIGIEAYVAPESRFHKKPVFWGNTGQRSTDEFGEGGDVSGGGAYTHMTMLAENATGLRNL 124 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 L S + ++ + R+ + E EG+I TG SG + A + Sbjct: 125 FTL-SSLASMEGYYRKPRMDRELIAEY-AEGIIATTGCPSGEVQTRLRLGQKDEALQAAA 182 Query: 173 TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++ +FG + ++ L H +R ++++ L +ATN+S +++++ E+H Sbjct: 183 DYRDIFGAENFFLELMDHGLAIERSVREGLLEIGKKLGLQPLATNDSHYVTKDQAESHSA 242 Query: 231 LMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV- 287 L+ V +S R + D +YLK+ EM + +++P A ++T+ IA R +V Sbjct: 243 LLCVQSGKTLSDPTRFKFDGDGYYLKSAQEMREYWDTEVPGATDSTLLIAERVQSYEEVY 302 Query: 288 -HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 H +P+F E EE+ L ++ + GL R G I GY +R +FEL Sbjct: 303 AHRDRMPKFEVPEG----HTEESWLHHEVMRGLRWRFPDG-IPDGY-----VERAEFELE 352 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VIA+ F YFL+VAD I +A+ I VGPGRGS AGS+ AYAL IT++DP+ +LLFER Sbjct: 353 VIAQKGFPSYFLVVADLINYARSVGIRVGPGRGSAAGSLVAYALGITNLDPIPQNLLFER 412 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL- 465 FLNP+R SMPD DIDF RR E++RY KYG +RVAQ+ITFG+++ KAA++D R Sbjct: 413 FLNPERASMPDIDIDFDDRRRGEMVRYATEKYGADRVAQVITFGTIKTKAAIKDAARVHF 472 Query: 466 -QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLEIS 515 Q Y+ D++ K +P A + L I D R A DP V + E + Sbjct: 473 GQPGYAIADKISKALPPPIMAKDIPLSGIVDPEHERYPEAAEVRSLIENDPEVKTIFETA 532 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-VTQFNMKWIEKAGLIKFDFL 574 + LEGL R+A HA +++ PL +P+++ R D +T ++ E GL+K DFL Sbjct: 533 RGLEGLIRNAGVHACAVIMSSEPLLGTIPLWQ--RDDGAIITGWDYPSCEAIGLLKMDFL 590 Query: 575 GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ ++D + A RG ++DL + DD E Y LL TLG+FQL+ MR L Sbjct: 591 GLRNLTVIGDAIDNIRANRGEEIDLDRLGLDDPEAYKLLGRGDTLGVFQLDGGAMRDLLR 650 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQG 687 MQP EDIIA+++LYRPGP+ Y +RKNG+++I IHP ++ LK ET G Sbjct: 651 RMQPTGFEDIIAVLALYRPGPMGMNAHNDYADRKNGRQQIKPIHPELEEPLKDILAETYG 710 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQ+MQIAQ ++GYS+ ADVLRRAMGKK KE ++K+ E F +G +NG S Sbjct: 711 LIVYQEQIMQIAQKVAGYSMGRADVLRRAMGKKKKEVLEKEFEGFRAGMKENGFSDEAIQ 770 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +++ + FA Y FNKSHAA Y ++SY TA++K +YP E++AA +T DN +K + Sbjct: 771 ALWDTILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAALLTSVGDNKDKSAVYLS 830 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866 + R+ I+++PP VN F + I + L AI+ VG I+ K + S Sbjct: 831 ECRRLGIRVLPPDVNESGRRFAAVGDDIRFGLGAIRNVGANVVDSIIATREKKGKYTSFT 890 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF + N+RV+ESL+ AGA D FG++R+ +++ ++ +++ ++ Sbjct: 891 DFLDSSELVVCNKRVIESLIKAGAFDSFGHTRLSMMRVHEDAVDAVVPLKRQEAMGQFDL 950 Query: 927 FAHEKGTFSDKITLEKFSVENSSVRFENEQ-----------RVLGFYFSGHPLDVYKPIL 975 F G ++ S + ++F++E+ +LG Y S HPLD + IL Sbjct: 951 FQGFGGGGDGDTAVQTASSPLAHLKFDDEEYPRKQKLAYEREMLGLYVSAHPLDGAERIL 1010 Query: 976 RKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 RK + +A + I +A ++ S +++ +KG T + E FFP Sbjct: 1011 RKHAKRPIAAILADPPKEGEIEIAGLITSLERRVNKKGEPWAICTVEDMDASLEVLFFP 1069 >gi|158335662|ref|YP_001516834.1| DNA polymerase III subunit alpha [Acaryochloris marina MBIC11017] gi|158305903|gb|ABW27520.1| DNA polymerase III alpha subunit [Acaryochloris marina MBIC11017] Length = 864 Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust. Identities = 309/787 (39%), Positives = 468/787 (59%), Gaps = 34/787 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L +++ + PAIA+TD ++ A+ + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPDLVSRAVELNMPAIALTDHGVMYGAIGLIKTCKKQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMYLLDQGKQ 127 I+G ++ + N +T Q + P V+L +GYQ L++L +S ++ + Sbjct: 62 IVGNEMYVI---NGDITKQERRPRY---HQVVLAKNKKGYQNLVKLTTISSLHGVQGRGI 115 Query: 128 SVRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R C++ L E EGLI+ + G I +A +A + +K+LFGD Y+ + Sbjct: 116 FSRPCINKDLLEEHHEGLIVTSACLGGEIPQAIMKEKPDIARRIAKWYKELFGDDYYLEI 175 Query: 187 QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR ++V++A ++ ++ATN+S F+S D E+HD L+ + ++++ R Sbjct: 176 QDHGSQEDRVVNVELVRIAQELDIKVIATNDSHFISCYDVESHDALLCIQTGKLITEDKR 235 Query: 246 PRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 R + YLK EM +F D + +A+ T+E+A + P P + E Sbjct: 236 LRYSGTEYLKTADEMALMFRDHLTDDVIADAIATTLEVAEKIEAYDIFRDPQSPDY---E 292 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D E L GL R + Y++RL++EL ++ +M FS YFL+ Sbjct: 293 VPD-GYTAETYLEEVTWDGLLERC--NCKERSEVTDTYKERLEYELEMLQQMGFSTYFLV 349 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D+I++A+ NNIPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D Sbjct: 350 VWDYIKYARDNNIPVGPGRGSAAGSLVAYALGITNIDPVHHGLLFERFLNPERKSMPDID 409 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 DFC ++RD +I YV KYG +RVAQIITF + +KA L+DV R L +PY + DR+ KLI Sbjct: 410 TDFCIEKRDAMIDYVTRKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKLI 469 Query: 480 PNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 P P L+ + D F+E DP V R L+++ ++EG + HAAG+VI Sbjct: 470 PVARGKPTKLKVMISDETPAPEFKEKYDKDPIVRRWLDMAIRIEGTNKTFGVHAAGVVIA 529 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594 PL Q+VP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT++QK+ D L Q R + Sbjct: 530 SEPLDQIVPLQRNNDGAV-ITQYFMEDLESLGLLKMDFLGLKNLTMIQKTTDLLKQNRQL 588 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D+ +P DD E + LL G+FQLESSGMRQ ++ ++P IEDI ++++LYRPGP Sbjct: 589 DLDVDRVPMDDPEAFQLLARGELEGVFQLESSGMRQVVKDLKPSNIEDISSILALYRPGP 648 Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 +D ++ + NRK+G+E I H LI P+L+ET G+++YQEQ+M+IAQ ++GYSL +AD+ Sbjct: 649 LDAGLIPKFINRKHGRESIDYPHDLIKPILEETYGIMVYQEQIMKIAQDMAGYSLGQADL 708 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EM+K +E FI GA++ G+ K ++ N+F+ + FA+Y + V+ Sbjct: 709 LRRAMGKKKMAEMEKHREIFIDGAAEKGVDKKVSENLFDQMLLFAEYCLSYD----TPVL 764 Query: 773 SYQTAWM 779 + + W+ Sbjct: 765 TLEYGWL 771 >gi|118463133|ref|YP_882406.1| DNA polymerase III subunit alpha [Mycobacterium avium 104] gi|118164420|gb|ABK65317.1| DNA polymerase III alpha subunit [Mycobacterium avium 104] Length = 1177 Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust. Identities = 339/996 (34%), Positives = 536/996 (53%), Gaps = 47/996 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + +L ++ PA+ +TD N+F A EF A AGI+P Sbjct: 5 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATKAGIKP 64 Query: 70 IIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + I + + + + + ++ A G + L +L S Sbjct: 65 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFKLSSLA 124 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Q + R+ + E +G+I TG SG + + A + ++++FG Sbjct: 125 SFEGQLGKWSRMDAELIAE-HADGIIATTGCPSGEVQTRLRLGQDREALESAAKWREIFG 183 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H ++ ++++ +P +ATN+ +++ + H+ L+ V Sbjct: 184 ADNFFLELMDHGLSIEQRVRGGLLEIGRKLNIPPLATNDCHYVTRDAAHNHEALLCVQTG 243 Query: 238 TVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI--LP 293 +S +R + D +YLK+ +EM I+ +++P A ++T+ IA R +V P +P Sbjct: 244 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTPRDRMP 303 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F E D + + L ++ +AGL R G QDY R ++E+ VI F Sbjct: 304 VFPVPEGHD----QASWLHHEVMAGLRRRFPDGV------GQDYIDRAEYEIKVICDKGF 353 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIVAD I +A+ +I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R Sbjct: 354 PSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERP 413 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471 S PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 414 SAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 473 Query: 472 VDRLCKLIPND-PAHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEGLY 522 DR+ K +P A + L I D S R++EA DP V + + ++ LEGL Sbjct: 474 ADRITKALPPPIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 533 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 534 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 593 Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +LD + A RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 594 GDALDNIKANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFN 653 Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695 DI+A+++LYRPGP+ Y +RKNG++ I IHP L +P+ L ET G+I+YQEQ+ Sbjct: 654 DIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIVYQEQI 713 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 714 MFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILP 773 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 774 FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 833 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874 ++PP VN V+F I + L A++ VG +++ +K F D+ +++D Sbjct: 834 VLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTREEKGKFTDFSDYLNKIDI 893 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 N++V ESL+ AGA D ++R L + +K ++F + G Sbjct: 894 SACNKKVTESLIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGDGGCT 953 Query: 935 SDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLD 969 T++ E + E+ +LG Y SGHPL+ Sbjct: 954 ESVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLN 989 >gi|293977832|ref|YP_003543262.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri DMIN] gi|292667763|gb|ADE35398.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri DMIN] Length = 1405 Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust. Identities = 330/1013 (32%), Positives = 538/1013 (53%), Gaps = 68/1013 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-- 62 + K+ + H+ H+S+S+L + +N+++ K A+ ITD NL F + Sbjct: 228 ISKNKYYSHIHNHTSFSILSSTIDINSLIKKTIEYDMDAVGITDYGNLMGVFNFINRIKN 287 Query: 63 ------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 I+PIIGC+L I D +K T++ + + V GY L +L Sbjct: 288 INDNFLVKKKIKPIIGCELYISYNDLIKKTDK-------IYNQVFFAKNKNGYYNLSKLC 340 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S ++ D + I L E LI ++G + I AEK + Sbjct: 341 SHGFI-DGYYSGIPIIGKNLVEKYKANLIAVSGDLNSEIPFTILNKGENEAEKVFKWWHN 399 Query: 177 LFGDRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 LFGD Y+ + RH + +Q++ + + + + NN+ +LS++DY AHD+L+ V Sbjct: 400 LFGDDFYIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDILLCVK 459 Query: 236 HS----TVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 +S T + + R + Y KN+++M ++FSDLPEA +N E+ + F + Sbjct: 460 NSQKQSTPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNLKELIEKVEFYDITN 519 Query: 289 APILPRF------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRL 341 +LP+F I+K C I+ ENE L +GA K + D ++++ Sbjct: 520 KILLPKFDIPNKWIKKYC--IKNNYENEY-------LRYLTYKGAKKKYLYINDIIKKKI 570 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 +FEL I ++ + GYFLIV D I AK + VGPGRGS AGSV AY L IT+IDP++++ Sbjct: 571 EFELETIKKIGYPGYFLIVQDLICKAKNIGVEVGPGRGSVAGSVVAYCLGITNIDPIKYN 630 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNPDR+S+PD DIDF R+++I +V NKYG +VAQIIT+G + AK+++RD Sbjct: 631 LLFERFLNPDRISLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDT 690 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV------------- 508 R L +P + D + K++PN + + I + + + + Sbjct: 691 ARVLNLPLLETDNIAKIVPNLSLKEIIKKNIKYLKKKLNSEELENVIKLKKIFKEKKTLQ 750 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 ++L+ + +EG R+ HA GI+I + + +P+ S+L +TQF+ +E+ GL Sbjct: 751 SKILKQAMVIEGSVRNTGIHACGIIITPSDIKKYIPVSTTKYSNLLLTQFDNDVVEQVGL 810 Query: 569 IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 +K DFLGLKTLT+++ +L +K+ L + D +TY L T+ +FQ ES GM Sbjct: 811 LKMDFLGLKTLTIIKDTLYL-----IKIPLYEVNIYDVKTYKLFKKGETVAVFQYESPGM 865 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 ++ L ++PD +D+IA+ +LYRPGP+ I + RK+G EKI P + L+ET G+ Sbjct: 866 QKYLRRLKPDKFDDLIAMNALYRPGPMQYITNFIARKHGLEKISYDLPELKEFLEETYGI 925 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 +YQEQVM I+Q +SG+S +AD LR+A+GKK K+ + K++FI G NG SK I Sbjct: 926 TVYQEQVMLISQKISGFSKGDADFLRKAIGKKDKDVLINIKQKFIDGGINNGYSKNILEK 985 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 I++ FA Y FNKSH+ Y+ I+++TA++K HYP E++A+ ++ M N++ I F ++ Sbjct: 986 IWKDWKSFASYAFNKSHSTCYSYIAFKTAYLKAHYPAEYMASVLSNNMQNLKNITFFIEE 1045 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866 ++ + ++ P +N F V I + + AIKG+G + I+ E ++S+ Sbjct: 1046 CKRMGVIVLGPDINESNYKFTVNKMGYIRFGMGAIKGIGKYSVNSIIKERKLINRYNSIF 1105 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLL------QSLDNIQKYAQWVEKN 918 VD + +N++VLE+LV +GA D F R Q ++ I K+ + Sbjct: 1106 CLIKNVDLRLVNKKVLENLVLSGAFDNFKKKIHRSQYFYEENGSNMIEKIIKFGVKYKNL 1165 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 + N ++F++ K + + N+ + E+ V+G Y + HPL+ Y Sbjct: 1166 KINMKNSLFSNVKDIEILEPKFKNCKKWNNIDLLKKEKEVIGMYLTSHPLNEY 1218 >gi|282875876|ref|ZP_06284743.1| putative DNA polymerase III DnaE [Staphylococcus epidermidis SK135] gi|281294901|gb|EFA87428.1| putative DNA polymerase III DnaE [Staphylococcus epidermidis SK135] Length = 935 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 346/1025 (33%), Positives = 549/1025 (53%), Gaps = 111/1025 (10%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H+S+ LL+ +L ++ ++DK + A+AITDTN L+ +F AA I PI G Sbjct: 4 HLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I + D L T+ ++VL +G + L +L S + + + K+ V I Sbjct: 64 --MTIYLTDGLY----------TIETVVL-AKNNQGLKSLYQLSSAIMM--RNKEEVPI- 107 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFKKLFGDRLYVNLQRHRG 191 WL+ E LI++ F ++++ K+++ F+ LY+N + Sbjct: 108 -EWLKRYD-EHLIII-------------FKEAELSHKQVIDAFEG--KKELYLNHNSNNT 150 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKDRPRV 248 R V ++ +L+E+D E L A+ +T ++ +K+ Sbjct: 151 LTGKR---------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKE---- 191 Query: 249 TPDHYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDD----- 302 T D + + E+ ++ +L E + N EI C + H +LP+F+ + Sbjct: 192 TLDEHFPSIEELQTL--NLSEDMITNANEIEELCQAEIAYHQSLLPQFVTPNGETSKDYL 249 Query: 303 ----IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I + E EL +K Y RL E +I M F YFL Sbjct: 250 WTILIHRLREWELNDKT---------------------YFNRLKHEYKIITDMGFEDYFL 288 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+D I +AK + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD Sbjct: 289 IVSDLIHFAKTHEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDI 348 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF RR++VI+YVQ+KYG V+ I+TFG L A+A RDVGR + + ++ + KL Sbjct: 349 DIDFEDTRREKVIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKL 408 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+ ++L+ F+ + +R E+S+KLEGL RH STHAAGI+I D+P Sbjct: 409 IPHKLG--ITLEEAYQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQP 466 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVD 597 L + P+ L TQ+ M E+ GL+K DFLGL+ L+++ Q L + +D Sbjct: 467 LFKFAPLTTGDTGLL--TQWTMAEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINID 524 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP+DD + + LL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ Sbjct: 525 IEAIPYDDKKVFDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEE 584 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y R++ ++ +HP ++P+LK T GVIIYQEQ+M IA ++G+S EAD+LRRAM Sbjct: 585 IPTYITRRHNPNQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAM 644 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + ++ +++ FI GA NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y + Sbjct: 645 SKKNRAILESERQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMS 704 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP F A ++ + + +K +A+ I I+PP++N +K + IY Sbjct: 705 YLKVHYPHYFYANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYL 764 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 SL IKG+G + + I+ E + P+ DF R+ + NR++LESL+ GA D FG Sbjct: 765 SLGTIKGIGYQSVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGK 824 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LLQ++D + VE++ E +F + K + E+ + + E+ Sbjct: 825 TRATLLQAIDQVLDLNSDVEQD-----EMLF----DLLTPKQSYEEKEELPDQLLSDCEK 875 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRI 1015 LGFY S HP++ +K K Y G++ + + +Q +T+ G + Sbjct: 876 EYLGFYISKHPVE------KKFEKKQYLGIFQLSNGSHYQPILVQFDHIKQIRTKNGQNM 929 Query: 1016 GWVTF 1020 +VT+ Sbjct: 930 AFVTY 934 >gi|41407355|ref|NP_960191.1| DNA polymerase III subunit alpha [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395707|gb|AAS03574.1| DnaE1 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 1177 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 339/996 (34%), Positives = 536/996 (53%), Gaps = 47/996 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + +L ++ PA+ +TD N+F A EF A AGI+P Sbjct: 5 SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATKAGIKP 64 Query: 70 IIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + I + + + + + ++ A G + L +L S Sbjct: 65 IIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFKLSSLA 124 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Q + R+ + E +G+I TG SG + + A + ++++FG Sbjct: 125 SFEGQLGKWSRMDAELIAE-HADGIIATTGCPSGEVQTRLRLGQDREALESAAKWREIFG 183 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H ++ ++++ +P +ATN+ +++ + H+ L+ V Sbjct: 184 ADNFFLELMDHGLSIEQRVRDGLLEIGRKLNIPPLATNDCHYITRDAAHNHEALLCVQTG 243 Query: 238 TVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI--LP 293 +S +R + D +YLK+ +EM I+ +++P A ++T+ IA R +V P +P Sbjct: 244 KTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTPRDRMP 303 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F E D + + L ++ +AGL R G QDY R ++E+ VI F Sbjct: 304 VFPVPEGHD----QASWLHHEVMAGLRRRFPDGV------GQDYIDRAEYEIKVICDKGF 353 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIVAD I +A+ +I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R Sbjct: 354 PSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERP 413 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471 S PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 414 SAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 473 Query: 472 VDRLCKLIPND-PAHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEGLY 522 DR+ K +P A + L I D S R++EA DP V + + ++ LEGL Sbjct: 474 ADRITKALPPPIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLI 533 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 534 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 593 Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +LD + A RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 594 GDALDNIKANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFN 653 Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQV 695 DI+A+++LYRPGP+ Y +RKNG++ I IHP L +P+ L ET G+I+YQEQ+ Sbjct: 654 DIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIVYQEQI 713 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 714 MFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILP 773 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 774 FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 833 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874 ++PP VN V+F I + L A++ VG +++ +K F D+ +++D Sbjct: 834 VLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSDYLNKIDI 893 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 N++V ESL+ AGA D ++R L + +K ++F + G Sbjct: 894 SACNKKVTESLIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGDGGCT 953 Query: 935 SDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLD 969 T++ E + E+ +LG Y SGHPL+ Sbjct: 954 ESVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLN 989 >gi|218247224|ref|YP_002372595.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8801] gi|257061441|ref|YP_003139329.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8802] gi|218167702|gb|ACK66439.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 8801] gi|256591607|gb|ACV02494.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 8802] Length = 874 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 318/818 (38%), Positives = 484/818 (59%), Gaps = 75/818 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA LN ++D+ + PAIA+TD ++ A+E + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLNALVDRAVELEMPAIALTDHGVMYGAIELMKVCRNKGIKP 61 Query: 70 IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123 IIG ++ DI++ + +Q V+L +GY+ L++L + +L Sbjct: 62 IIGNEMYVINEDIEVNKRHRKYHQ-----------VVLAKNTQGYKNLVKLTTISHLKGI 110 Query: 124 QGKQS-VRICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 QGK R C++ +E+ T EGLI+ + G + ++ ++ A+ ++KLF Sbjct: 111 QGKGIFARPCIN--KELLTQYHEGLIVTSACLGGEVPQSILAGDTKQAKTVAKWYQKLFK 168 Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ +Q H DR ++V++A + ++ATN+S F+S D EAHD L+ + Sbjct: 169 DDYYLEIQDHGSQEDRIVNRELVKIARDLGIKIIATNDSHFISCYDVEAHDALLCIQTGK 228 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHA-PI 291 ++++ R R + YLK+ EM +F D LP EA+ NT+E+A + + P Sbjct: 229 LITEDKRLRYSGTEYLKSAEEMALLFRDHLPDDVIEEAINNTLEVADKIEPYKNIFGEPR 288 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P + ++ + A GL RL ++G + Y++RL++EL ++ RM Sbjct: 289 IPNYPVPSG----HTPDSYVEEIAWEGLLERLK--CRSRGEISDVYKERLEYELKMLQRM 342 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 FS YFL+V D+I++A+ N IPVGPGRGS AGS+ AY L IT+IDP+ LLFERFLNP+ Sbjct: 343 GFSTYFLVVWDYIKYARDNGIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPE 402 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R SMPD D DFC +RRDE+I+YV KYG VAQIITF + +KA L+DV R L +PYS+ Sbjct: 403 RKSMPDVDTDFCIERRDEMIKYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYSE 462 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHAST 527 D++ K+IP P L+ + D F+E DP V R L+++ ++EG + Sbjct: 463 SDKMAKMIPVSRGKPTKLKVMISDETPCPEFKERYDNDPQVRRWLDMAIRIEGTNKTFGV 522 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAG+VI PL ++VP+ ++ + +TQ+ M+ +E GL+K DFLGL+ LT +QK+ + Sbjct: 523 HAAGVVISSEPLDEIVPLQKNNEGSV-ITQYFMEDLESLGLLKMDFLGLRNLTTIQKTAE 581 Query: 588 FLAQ-RGVKVDLSLIPF------------------DDHETYHLLTTKGTL-GIFQLESSG 627 + Q R V++DL +P +D + H L +G L GIFQLESSG Sbjct: 582 LIKQNRKVELDLDQLPLEERKALQIIAKGTAKKLPEDIQKTHKLLERGDLEGIFQLESSG 641 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 M+Q ++ ++P IEDI ++++LYRPGP+D ++ + NRK+G+E I H L++P+LKET Sbjct: 642 MKQIVKDLKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGQEPIKYEHRLLEPILKET 701 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK EM+K +E+FI GA+KNG+ K I Sbjct: 702 YAVLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMEKHREKFIEGAAKNGVIKEI 761 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 A N+F + +FA+Y +SY T + Y Sbjct: 762 AENLFTQMVQFAEY-----------CLSYDTEILTVEY 788 >gi|161833722|ref|YP_001597918.1| putative DNA polymerase III subunit alpha (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri GWSS] gi|152206212|gb|ABS30522.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri GWSS] Length = 1411 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 329/1007 (32%), Positives = 535/1007 (53%), Gaps = 68/1007 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62 + H+ H+S+S+L + +N+++ K A+ ITD N+ F + Sbjct: 236 YSHIHNHTSFSILSSTIDINSLIKKTIEYDMDAVGITDYGNMMGVFNFINRIKNINDNFL 295 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 I+PIIGC+L I D +K T++ + + V GY L +L S ++ Sbjct: 296 VKKKIKPIIGCELYISYNDLIKKTDK-------IYNQVFFAKNKNGYYNLSKLCSHGFI- 347 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 D + I L E LI ++G + I AEK + LFGD Sbjct: 348 DGYYSGIPIIGKNLVEKYKANLIAVSGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDDF 407 Query: 183 YVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---- 237 Y+ + RH + +Q++ + + + + NN+ +LS++DY AHD+L+ V +S Sbjct: 408 YIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDILLCVKNSQKQS 467 Query: 238 TVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 T + + R + Y KN+++M ++FSDLPEA +N E+ + F + +LP+ Sbjct: 468 TPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNLKELIEKVEFYDITNKILLPK 527 Query: 295 F------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY-RQRLDFELNV 347 F I+K C I+ ENE L +GA K + D ++++ FEL Sbjct: 528 FYIPNKWIKKYC--IKNNYENEY-------LRYLTYKGAKKKYLYINDIIKKKISFELET 578 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I ++ + GYFLIV DFI AK + VGPGRGS AGSV AY L IT+IDP++++LLFERF Sbjct: 579 IKKIGYPGYFLIVQDFICQAKNIGVEVGPGRGSVAGSVVAYCLGITNIDPIKYNLLFERF 638 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNPDR+S+PD DIDF R+++I +V NKYG +VAQIIT+G + AK+++RD R L + Sbjct: 639 LNPDRISLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDTARVLNL 698 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV-------------DRLLEI 514 P + D + K++PN + + I + + + + ++L+ Sbjct: 699 PLLETDNIAKIVPNISLKEIIKKNIKYLKKKLNSEELENVIKLKKIFKEKKTLQSKILKQ 758 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + +EG R+ HA GI+I + + +P+ S+L +TQF+ +E+ GL+K DFL Sbjct: 759 AMVIEGSVRNTGIHACGIIITPSDIKKYIPVSTTKYSNLLLTQFDNDVVEQVGLLKMDFL 818 Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 GLKTLT+++ +L +K+ L + D +TY L T+ +FQ ES GM++ L Sbjct: 819 GLKTLTIIKDTLYL-----IKIPLYEVNLYDVKTYKLFKKGETVAVFQYESPGMQKYLRR 873 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694 ++PD +D+IA+ +LYRPGP+ I + RK+G EKI P + L+ET G+ +YQEQ Sbjct: 874 LKPDKFDDLIAMNALYRPGPMQYITNFIARKHGLEKISYDLPELQEFLEETYGITVYQEQ 933 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM I+Q +SG+S +AD LR+A+GKK K+ + K++FI G NG SK I I++ Sbjct: 934 VMLISQKISGFSKGDADFLRKAIGKKDKDVLINIKQKFIYGGINNGYSKNILEKIWKDWK 993 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSH+ Y+ I+++TA++K HYP E++A+ ++ M N++ I F ++ ++ + Sbjct: 994 SFASYAFNKSHSTCYSYIAFKTAYLKAHYPAEYMASVLSNNMQNLKNITFFIEECKRMGV 1053 Query: 815 QIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV 872 ++ P +N F V I + + AIKG+G + I+ E ++S+ V Sbjct: 1054 IVLGPDINESNYKFTVNKMGYIRFGMGAIKGIGKYSVNSIIKERKLINRYNSIFCLIKNV 1113 Query: 873 DSKKLNRRVLESLVFAGALDCF--GYSRMQLLQS------LDNIQKYAQWVEKNRTNKHE 924 D + +N++VLE+LV +GA D F R Q ++ I K+ + + N Sbjct: 1114 DLRLVNKKVLENLVLSGAFDNFKKKIHRSQYFDEENGSNMIEKIIKFGVKYKNLKINMKN 1173 Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++F++ K + + N+ + E+ V+G Y + HPL+ Y Sbjct: 1174 SLFSNVKDIEILEPKFKNCKKWNNIDLLKKEKEVIGMYLTSHPLNEY 1220 >gi|172038990|ref|YP_001805491.1| DNA polymerase III subunit alpha [Cyanothece sp. ATCC 51142] gi|171700444|gb|ACB53425.1| DNA polymerase III alpha subunit, N-terminal extein/intein [Cyanothece sp. ATCC 51142] Length = 874 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 319/816 (39%), Positives = 481/816 (58%), Gaps = 71/816 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA LN ++D+ + PAIA+TD ++ A+E + G++P Sbjct: 2 SFVGLHIHSDYSLLDGASQLNALIDRAVELEMPAIALTDHGVMYGAIELIKVCRNKGVKP 61 Query: 70 IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123 IIG ++ DI+ + K +Q V+L +GY+ L++L + +L Sbjct: 62 IIGNEMYVINGDIEEKKKYKKYHQ-----------VVLAKNTQGYKNLVKLTTISHLKGM 110 Query: 124 QGKQS-VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 QGK R C++ L E EGLI+ + G I + + A+ +KKLF + Sbjct: 111 QGKGIFARPCINKELLEQYHEGLIVTSACLGGEIPQRILAGDIKEAKAVAKWYKKLFKED 170 Query: 182 LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ +Q H DR + ++A ++ +VATN+S F+S D EAHD L+ + ++ Sbjct: 171 FYLEIQDHGSVEDRIVNVAIAKIARDLDIKIVATNDSHFISCYDVEAHDALLCIQTGKLI 230 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHA-PILP 293 + + R R + YLK+ EM +F D + EA+ NT+E+A + + P +P Sbjct: 231 TDEKRLRYSGTEYLKSADEMRLLFRDHLSDDVIEEAVNNTLEVAEKIEPYKDILGEPRIP 290 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + + ++ + A GL RL ++ +YR+RL++EL ++ +M F Sbjct: 291 NYPVPAGHN----PDSYVEEIAWQGLLERLK--CRSRSEIPDEYRERLEYELKMLQQMGF 344 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 S YFL+V D+I++A+ N+IPVGPGRGS AGS+ AY L IT+IDP+ LLFERFLNP+R Sbjct: 345 STYFLVVWDYIKYARDNHIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERK 404 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC +RRDE+I+YV KYG VAQIITF + +KA L+DV R L +PY++ D Sbjct: 405 SMPDVDTDFCIERRDEMIKYVTRKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESD 464 Query: 474 RLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 ++ K+IP P L+ + D F+E DP V R ++++ ++EG + HA Sbjct: 465 KMTKMIPVSRGKPTKLKVMVSDETPTPEFKERYENDPLVRRWVDMAIRIEGTNKTFGVHA 524 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI PL Q+VP+ ++ + +TQ+ M+ +E GL+K DFLGL+ LT +Q++ D + Sbjct: 525 AGVVISSEPLDQVVPLQKNNDGAV-ITQYYMEDLESLGLLKMDFLGLRNLTTIQRTADLI 583 Query: 590 AQ-RGVKVDLSLIPFD------------------DHETYHLLTTKGTL-GIFQLESSGMR 629 Q +GV +DL +P D D E H L KG L GIFQLESSGM+ Sbjct: 584 KQNQGVTLDLDQLPLDERKALEIIAKGTAKKLPPDVEKTHKLLEKGDLEGIFQLESSGMK 643 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687 Q ++ ++P IEDI ++++LYRPGP+D ++ + NRK+G+E+I+ H L++P+LKET Sbjct: 644 QIVKDLKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGREEIIYQHKLLEPILKETYA 703 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK EM K +E FI GA+KNG+S+ IA Sbjct: 704 VLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKIAEMTKHREIFIDGATKNGVSQAIAE 763 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 ++FE + KFA+Y +SY T + Y Sbjct: 764 DLFEQMIKFAEY-----------CLSYDTEILTVEY 788 >gi|319948506|ref|ZP_08022638.1| DNA polymerase III subunit alpha [Dietzia cinnamea P4] gi|319437803|gb|EFV92791.1| DNA polymerase III subunit alpha [Dietzia cinnamea P4] Length = 1181 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 347/1072 (32%), Positives = 556/1072 (51%), Gaps = 66/1072 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +S+L+G ++ + + + PA+ +TD N++ A +F ++A G++PI Sbjct: 5 FVHLHNHTEFSMLDGMAQIDPLFAEASRLGMPAVGMTDHGNMYGASDFYKQAKKTGVKPI 64 Query: 71 IGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 IG + + + + + + ++ A G + L L S Sbjct: 65 IGIEAYVAPESRFEKKRILWGEKHQKSDDVAGSGAYTHMTMVAENATGLRNLFRLSSLAS 124 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 Q + R+ L E +EG+I +G SG I + A + ++ +FG Sbjct: 125 YEGQLGKWARMDAEILAEY-SEGIIATSGCPSGEIQTRLRLGHIKEAYEAAEKWQSIFGK 183 Query: 180 DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 D ++ L H G D R RE +++L +P + TN+ +++ E AH+ ++ V Sbjct: 184 DNFFLELMDH-GIDIERRVRE-DLLKLGRDLGMPPLVTNDCHYVTREQAHAHEAMLCVQT 241 Query: 237 STVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI--L 292 ++ ++R + D +YLK+ EM + + S++P A +NT+ IA R + P + Sbjct: 242 GKTLADENRFKFDGDGYYLKSAQEMRAQWDSEVPGACDNTLWIAERVQPYDDIWTPRDRM 301 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P+F E + E+ L + GL+ R G Q+Y +R +FEL VI Sbjct: 302 PKFPVPEGE----TEDTWLAKEVHKGLQWRFPDGV------PQEYIERANFELEVIKGKG 351 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + GYFL+V D I+ A+ I VGPGRGS AG++ AYAL IT+IDP+ LLFERFLNP+R Sbjct: 352 YPGYFLVVGDLIEHARSIGIKVGPGRGSAAGALVAYALKITNIDPIEHGLLFERFLNPER 411 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA--LQMPYS 470 S PD DIDF RR E+IRY +K+G +++AQ+ITFG+++ KAA++D R Q Y+ Sbjct: 412 PSAPDIDIDFDDRRRGEMIRYASDKWGADKIAQVITFGTIKTKAAIKDAARVNFGQPGYA 471 Query: 471 QVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLEISQKLEGL 521 DR+ K +P A + L I D R A DP V R+ + ++ LEG+ Sbjct: 472 IADRITKALPPAIMAKDIPLSGITDPKHERYGEAAEVRQLLETDPDVKRIYDTARGLEGM 531 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R A HA +++ PL ++PM++ + +T ++ E GL+K DFLGL+ LT+ Sbjct: 532 VRQAGVHACAVIMSSEPLLDVIPMWKRAQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTV 591 Query: 582 LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + L+ + RG ++DL + DD TY LL TLG+FQL+S GMR+ L+ M+P Sbjct: 592 IGDCLENIKLNRGEEIDLDTLSTDDQATYDLLARGDTLGVFQLDSGGMRELLKRMKPTGF 651 Query: 641 EDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQEQ 694 DI+A ++LYRPGP+ +N +RKNGK+++V IHP L +P+ L ET G+I+YQEQ Sbjct: 652 NDIVAALALYRPGPMGMGTHWNYADRKNGKQELVPIHPELEEPLREILGETHGLIVYQEQ 711 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 +M I++ L+GY+ EAD R+AMGKK E + + E+F G + G SK ++ + Sbjct: 712 IMAISRELAGYTAGEADGFRKAMGKKKAEVLAAEYEKFSGGMFERGFSKEAVDALWGTIE 771 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAA Y ++S+ T ++K +YP E++AA +T D+ +K + + RQ I Sbjct: 772 PFASYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAALLTSVGDDKDKAALYLSNCRQMGI 831 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVD 873 +++PPSVN +F I + L A++ VG I+ A A F D+ +++D Sbjct: 832 KVLPPSVNESLTNFASVGKDIRFGLGAVRNVGAQVVDSIVAAREAKGEFTDFSDYLAKID 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 ++V ESL+ AGA D G+ R L + + +K ++F T Sbjct: 892 QTACTKKVTESLIKAGAFDSLGHPRKGLFLVHADAVESVMSTKKAEAVGQFDLFGGGDDT 951 Query: 934 FSDKITLEKFSVENSSVRFENEQRV------LGFYFSGHPLDVYKPILRKMGIKGYEESV 987 +D + F+V ++ +Q++ LG Y SGHPLD + L + ++ Sbjct: 952 AADTGFGDVFAVRVPDEEWDTKQKLALEREMLGLYVSGHPLDGLEAALEAK----TDTNI 1007 Query: 988 ATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ATI G + + ++ ++ + G VT + E FFP Sbjct: 1008 ATIHEGELPHGTAVTIGGIISGVDRRVNKNGEPWAIVTIEDFNGSVEVLFFP 1059 >gi|126660124|ref|ZP_01731243.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110] gi|126618567|gb|EAZ89317.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110] Length = 873 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 320/815 (39%), Positives = 481/815 (59%), Gaps = 70/815 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA LN ++D+ + PAIA+TD ++ A+E + G++P Sbjct: 2 SFVGLHIHSDYSLLDGASQLNALIDRALELEMPAIALTDHGVMYGAIELIKVCRNKGVKP 61 Query: 70 IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123 IIG ++ DI+ + K +Q V+L +GY+ L++L + +L Sbjct: 62 IIGNEMYVINGDIEEKKKYKKYHQ-----------VVLAKNTQGYKNLVKLTTISHLNGM 110 Query: 124 QGKQS-VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 QGK R C++ L E EGLI+ + G I + + A+ ++K+F D Sbjct: 111 QGKGIFARPCINKELLEEYHEGLIVTSACLGGEIPQRILAGDIKEAKAIAKWYQKIFKDD 170 Query: 182 LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ +Q H DR + ++A + +VATN+S F+S D EAHD L+ + + ++ Sbjct: 171 FYLEIQDHGSVEDRIVNVAIAKIARDLGIKIVATNDSHFISCYDVEAHDALLCIQTAKLI 230 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPILPR 294 + + R R + YLK+ EM +F D LP EA+ NT+E+A + + P +P Sbjct: 231 TDEKRLRYSGTEYLKSADEMRLLFRDHLPDDVIEEAINNTLEVAEKIEPYKILGEPRIPN 290 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + + ++ + A GL RL ++ DYR+RL++EL ++ RM FS Sbjct: 291 YPVPAGHN----PDSYVEEIAWQGLLERLK--CRSRSEIPDDYRERLEYELKMLQRMGFS 344 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFL+V D+I++A+ N IPVGPGRGS AGS+ AY L IT+IDP+ LLFERFLNP+R S Sbjct: 345 TYFLVVWDYIKYARDNRIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERKS 404 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD D DFC +RRDE+I+YV KYG VAQIITF + +KA L+DV R L +PY++ D+ Sbjct: 405 MPDVDTDFCIERRDEMIKYVTRKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESDK 464 Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 + K+IP P L+ + + F+E DP V R ++++ ++EG + HAA Sbjct: 465 MTKMIPVSRGKPTKLKVMVSNETPTPEFKERYENDPLVRRWVDMAIRIEGTNKTFGVHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI PL Q+VP+ ++ + +TQ+ M+ +E GL+K DFLGL+ LT +Q++ D + Sbjct: 525 GVVISSEPLDQVVPLQKNNDGAV-ITQYYMEDLESLGLLKMDFLGLRNLTTIQRTADLIK 583 Query: 591 Q-RGVKVDLSLIPFD------------------DHETYHLLTTKGTL-GIFQLESSGMRQ 630 Q +G ++DL +P D D E H L KG L GIFQLESSGM+Q Sbjct: 584 QNQGFELDLDQLPLDERKALEIIAKGTAKKLPPDVERTHKLLEKGDLEGIFQLESSGMKQ 643 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688 ++ ++P IEDI ++++LYRPGP+D ++ + NRK+G+E+I+ H L++P+LKET V Sbjct: 644 IVKDLKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGREEIIYQHKLLEPILKETYAV 703 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 ++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK EM K +E FI GA+KNG+S+ IA + Sbjct: 704 LVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKIAEMTKHREIFIDGATKNGVSQAIAED 763 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +FE + KFA+Y +SY T + Y Sbjct: 764 LFEQMIKFAEY-----------CLSYDTEILTVEY 787 >gi|58337253|ref|YP_193838.1| DNA polymerase III alpha-chain [Lactobacillus acidophilus NCFM] gi|227903838|ref|ZP_04021643.1| possible DNA-directed DNA polymerase [Lactobacillus acidophilus ATCC 4796] gi|58254570|gb|AAV42807.1| DNA polymerase III alpha-chain [Lactobacillus acidophilus NCFM] gi|227868725|gb|EEJ76146.1| possible DNA-directed DNA polymerase [Lactobacillus acidophilus ATCC 4796] Length = 1035 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 341/1032 (33%), Positives = 553/1032 (53%), Gaps = 60/1032 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ ++++++ ++ +TD N + + F + A AGI+P++G Sbjct: 6 LQNLSSFTLLDSPTKVSDLINTAKEKGYQSVGLTDINVTYGLVNFYELAKKAGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-C 132 Q+ ++ G +++ + GY L+ L S + LL + Q+ +I Sbjct: 66 QVRLN----------GLIDSTQKYDLIVFAKSDAGYHNLLRLSSAINLLTENGQNDKILT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + ++ L+++ + + A F + Q+ L +KL D +Y+ + + Sbjct: 116 LKELTKYLSDLLVIVPANTKSEL-VALFETNQQLGSDFLRELRKLSSD-VYLGVYASKNG 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVTP 250 + Y + + L LPLVA ++ +L D L ++ +S Q P + + Sbjct: 174 ENYI-NYLRTLNKQFNLPLVAVEDTEYLKPRDQFLQKTLRSI-NSGQKLQDILPLAKQSG 231 Query: 251 DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HYL + +++ + DL EA+ NT +IA+ C+ + P+LP++ + + E Sbjct: 232 SHYLASAEDVLERYHQLDLDEAVNNTWKIAQECNANVVFQKPVLPKYRQNKF----TTSE 287 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR A GL+ R Q I +Y++RL++EL +I +M F YFLIV D + + Sbjct: 288 EYLRYLARTGLKDRFKQKTIPA-----EYQKRLNYELRIINQMGFDDYFLIVWDVVNYCH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS GS+ +YAL IT++DPL ++LLFERFLNP R MPD D+D +RD Sbjct: 343 RVKITTGPGRGSACGSLVSYALKITEVDPLEYNLLFERFLNPARHEMPDIDLDIPDVQRD 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + ++++ + IP +S Sbjct: 403 TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEINKWARAIPYSKGK-IS 461 Query: 489 LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ ++SR E RL A L + + LEGL RH S HAAG+VI D ++ + + Sbjct: 462 LKQAYEESR--ELRLLVDATQENKLLFQTAMNLEGLPRHYSIHAAGLVISDDSIAGISGL 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 +PVTQ K++E GL+K DFLGL+ LT+L L+ + ++G+K+D + IP DD Sbjct: 520 QAGPLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLICEQGIKIDPNEIPLDD 578 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 ET L T IFQ ES G+RQ L + P+ ED++A+ +LYRPGP+ NI ++ RK Sbjct: 579 SETLQLFQEGKTDAIFQFESGGIRQVLRKLHPNNFEDLVAVNALYRPGPMQNIDIFIARK 638 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+ + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ + Sbjct: 639 NGQAGVKYPDPSLKRILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVI 698 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +++K +FISG K G +K + ++ + +FA+YGFN+SHA AY +++ A++K HYP Sbjct: 699 EQEKSKFISGTIKKGHAKEVGERVYRYIEQFANYGFNRSHAVAYTKVAFWLAYLKVHYPA 758 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F A L K + + A++ NI+++ P +N +D+ + + I L AIKG+ Sbjct: 759 AFYTA--MLNSSTSVKAQSYIMQAQEANIKVVSPDINQSKLDYSLDNKNILVGLKAIKGL 816 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A+ I A+ KP+ SL DF R+D K L +E+L+ AGA D +R +LL + Sbjct: 817 RMDFAQEI--ANNTKPYKSLNDFLRRIDPKFLQVDAIEALIMAGAFDQIEDNRNELLINC 874 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 I Q +N + I +DK T ++ + E E++VLGF + Sbjct: 875 KEIIANVQLTGQNMS--LSEILGDAPLKHADKPT--------NAEKAEMEEKVLGFTTTT 924 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK----KTRKGSRIGWVTFS 1021 PL + RK + + I + + V K K +T+ G + + +F+ Sbjct: 925 TPLVAVQKFARKFNARPLSQF-------QINESGISVGKLMKFKPIRTKNGKNMAFASFA 977 Query: 1022 EPAKEYEANFFP 1033 + + E E FP Sbjct: 978 DSSSEQEVIIFP 989 >gi|328955785|ref|YP_004373118.1| DNA polymerase III, alpha subunit [Coriobacterium glomerans PW2] gi|328456109|gb|AEB07303.1| DNA polymerase III, alpha subunit [Coriobacterium glomerans PW2] Length = 1274 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 324/952 (34%), Positives = 509/952 (53%), Gaps = 52/952 (5%) Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI GC++ + L ++ P + ++LL GY L++LVS + Sbjct: 119 IKPIFGCEVYFTPDETLARDHK-----PELYHLILLARNEVGYVNLMQLVSEA-AVSGFY 172 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R+ L L+ EG+I + +G I R +++ A TF+ LF Y+ Sbjct: 173 YKPRVTLDNLRR-HREGIIGSSACLAGVIPRCIDEGNTEQAIIWAETFRDLFEPGSFYIE 231 Query: 186 LQRHR------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 +Q H D Q++++A + ++ATN+ +L+ D D+++ + + Sbjct: 232 IQEHGITTDAGMTDEQLSHQLIEIAARVGVKVIATNDFHYLTRADAPVQDLMLCIGTNAK 291 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + +R R+ + Y+K+ EM ++F PEAL+NTVE+A RC L + ILPRF Sbjct: 292 MDDPNRMRMQGSEFYMKSEEEMRALFPYCPEALDNTVELAERCEVELDWDSIILPRF--- 348 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + E++ R + GL R + + +R ++E VI F+ YFL Sbjct: 349 PGLDEGETHESQFRRECERGLARRYGDDWREREISGVNIAERFEYEYRVICDKGFAAYFL 408 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVAD+++WAK+N I VGPGRGS AG++ AYA+ IT DPL L+FERFL+P+R MPD Sbjct: 409 IVADYVRWAKENGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERFLSPERAEMPDI 468 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DF +RR EV+ YV+ +YG ++V +IT+ +++AK A+ D R L P S RL K+ Sbjct: 469 DMDFDDERRLEVVEYVRGRYGADKVTHVITYSTIKAKQAINDAARVLDYPVSTGQRLSKM 528 Query: 479 IPNDPAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 I + P+ +S Q + + F +A D R+++ + +EGL R HA Sbjct: 529 ISSAPSVKLS-QVLKQQKKKEELYNPDFADAYRGDDDARRIIDAALSIEGLTRGEGVHAC 587 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFL 589 ++I P+++ VP D + + +TQ+ + GL+K DFLGL+TLT++ K+ + L Sbjct: 588 AVLICRDPVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIL 647 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 A G +VD+ IPFDD + L+ T G+FQ+ES+GM ++ M+P + ++AL++L Sbjct: 648 ANFGTEVDVDAIPFDDPAIFELMAAGRTAGVFQVESAGMTATIKNMRPSEFKHVVALIAL 707 Query: 650 YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 YRPGP+ +V Y +R +G++K+V + P+L+ET G I+YQEQVMQI+ +SG++ Sbjct: 708 YRPGPLGAGMVADYIDRMHGRKKVVYYDNRLAPLLEETYGTIVYQEQVMQISMHMSGFTA 767 Query: 708 SEADVLRRAMGKKIKEEM------------DKQKERFISGASKNGISKTIAVNIFELLAK 755 E+D +R+A+ KK E M + ++ +++GA +N S+ IA I+ + K Sbjct: 768 GESDKVRKAVAKKHIELMETVVQHWDDGTDETMQDHWMNGAVRNDFSRAIAEQIWADVLK 827 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA+Y FNKSH+A YA++ QTAW+K HYP E++AA +T EKI + R I+ Sbjct: 828 FAEYAFNKSHSAGYAILVMQTAWLKAHYPYEYMAAVLTSFTGKTEKIVHYISACRHEGIE 887 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDS 874 ++PP +N DF I + LA I+GVG AR I+E F +L D+ R+D Sbjct: 888 VLPPDINESNKDFTAVHEGIRFGLAGIRGVGEGVARTIIEERERGGAFKNLHDYMERLDP 947 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHENIF-- 927 NRRV E+L+ AGA D G+ R QL+ +D NI K R + F Sbjct: 948 ACANRRVCEALIKAGAFDASGFPRRQLMGFIDKNNPENILDAVVRRNKTRATGQVSFFDV 1007 Query: 928 --AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 E F K+ + + E+ VLG Y S HPL Y+ L + Sbjct: 1008 LGDVEGSGFEVKVPEPDGQEWDRHTKLAQEREVLGIYVSDHPLRPYECALAR 1059 Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54 +FVHL HS YS+L+GA + +++++ PA+A+TD ++ Sbjct: 2 AFVHLHNHSEYSMLDGATRIEDMVERAVELGMPAVALTDHGYMYG 46 >gi|227515187|ref|ZP_03945236.1| possible DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227086519|gb|EEI21831.1| possible DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 1099 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 360/1044 (34%), Positives = 537/1044 (51%), Gaps = 95/1044 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FV L V S YSLLE + ++ A+ + D L+ A+ F ++A AG+ P Sbjct: 2 GFVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG L + + + LL A GYQ L L +R + D+ Q + Sbjct: 62 VIGVSLPLTFAEG-------------TLDVTLLAKGAVGYQNLTRLSTRA-MTDRANQPL 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 I L+E+ + ++++ + S+ T+ +L D L +NL Sbjct: 108 TI--EDLREVSDDLVVIVA-------PQLMLLGVSEQ------TYAQLGEVADYLGINLD 152 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRP 246 + + +A LPL+A +L+E+DY A VL A+ A T+ Sbjct: 153 ----FTAAERQDLQAVAERCGLPLIAFEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKAS 208 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALE--NTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + T H+L+ E+ + + A TV +A RC P+LP F + Sbjct: 209 QRTGRHWLRPAEEVAAAYRAAGLAEAAAQTVAVAERCQVHFADQTPVLPAFPTPAGQGV- 267 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR GL R G A +Y+ RL+ EL VI +M F YFLIV D + Sbjct: 268 ---ADYLRELCQRGLAKRKLAGDPA------EYQARLEHELTVIHQMGFDNYFLIVWDLM 318 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A ++ I GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNP+R MPD D+D Sbjct: 319 NFAHQHQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPD 378 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----- 479 +RR+EV+ Y+ + YGHERVAQIITFGSL K LRDV R +P QVD L ++I Sbjct: 379 NRREEVLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVDSLSQVIDRVKG 438 Query: 480 PN-------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 P+ + A PV Q +A DS+ V LLE++ KLEGL RH S HAAG+ Sbjct: 439 PHQTLADLLESAQPV--QNLARDSKL---------VACLLEVAAKLEGLPRHDSIHAAGV 487 Query: 533 VIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 V+ PL + VP+ + + VTQF +E GL+K D LGL+ LT ++ +L+ + Q Sbjct: 488 VLAAEPLIKTVPLQAGNEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQ 547 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 DL+ I +D T L T GIFQ ESSG+RQ L + PD E+I+A+ +LYR Sbjct: 548 HQPDFDLTHIALNDRPTLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYR 607 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + RK G+E + + P+L T G+++YQEQVMQ+A ++ G+SL EAD Sbjct: 608 PGPMDNINHFIARKKGQEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEAD 667 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAM KK M KE F++GA+K G S +A +F + +FA+YGFN+SHA AY+ Sbjct: 668 LLRRAMSKKKLATMASMKEAFLAGANKRGYSNAVAEQVFAYIDQFANYGFNRSHAVAYSK 727 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++++ A++K H+P EFLAA M + D K+ + +A+Q I P++N + Sbjct: 728 MAFEMAYLKVHFPAEFLAALMETDPDT-SKVWAYFSEAKQLGITTHGPAINQSQERVSLV 786 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 D ++ L IKG+ R I+E + P+ L D +R+D+K + L+ AGA Sbjct: 787 DQELWLGLDMIKGLRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEALFVPLIDAGA 846 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 LD GY+R ++ + L I + A++ G + ++ +V Sbjct: 847 LDHLGYNRAEMAEGLKAILEGAEYA--------------GLGLGMAPVVAQRNEYP-LAV 891 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKT 1009 R E VLG Y SGHP+ Y+ + K+ + +VA +R N +RL MV ++ T Sbjct: 892 RLAREHAVLGTYLSGHPVSQYQDLRTKLKLP----TVAQLRPNQRVRLVLMVTRMRKVTT 947 Query: 1010 RKGSR-IGWVTFSEPAKEYEANFF 1032 ++ + + ++T S+ E F Sbjct: 948 KREHKPMAFLTASDETGAVEVTIF 971 >gi|86742845|ref|YP_483245.1| DNA polymerase III subunit alpha [Frankia sp. CcI3] gi|86569707|gb|ABD13516.1| DNA polymerase III, alpha subunit [Frankia sp. CcI3] Length = 1249 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 347/1076 (32%), Positives = 565/1076 (52%), Gaps = 69/1076 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA + + A PA+ +TD N+F A EF Q A +AG++P Sbjct: 5 SFVHLHVHTEYSMLDGAAKTGLLFKEAAKLGMPAVGMTDHGNMFGAYEFYQGAKSAGVKP 64 Query: 70 IIG---------------------CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108 IIG Q D+D + G + +L + A G Sbjct: 65 IIGIEAYLAPESRHHKRPVLWGERSQRDVDPAGEGGDVSGGGA----YTHMTMLAANAAG 120 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 + L L S + ++ + R+ + + +EG+I TG SG + A Sbjct: 121 LRNLFRL-SSIASIEGYYRKPRMDHELVSQY-SEGIIATTGCPSGEVQTRLRLGQFDKAL 178 Query: 169 KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 T++++FG D ++ L H +R ++ + L +ATN+S +++++ Sbjct: 179 AAAATYQEVFGADNFFLELMDHGLPIERSVRQGLLDIGDKLGLRPLATNDSHYVTQDQAG 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFI 284 +H+VL+ V + R + +YLK+ EM +++ S++P A ++++ IA R Sbjct: 239 SHEVLLCVGTGKKLDDPTRFKFDGSGYYLKSSEEMRNLWDSEVPGACDSSLLIAERVESY 298 Query: 285 LQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 V + +PR+ + + + LR + GL R G A D +R+D Sbjct: 299 DDVFKFVDRMPRYPVPAGE----TQLSWLRKEIDRGLTWRFPAGVPA------DVVERVD 348 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +E+ VI +M F YFL+VAD ++A+ I +GPGRGS GS+ AY L IT+++P+ +L Sbjct: 349 YEVGVIDKMGFPAYFLVVADICKFARDRGIGLGPGRGSATGSMIAYILGITELNPIEHAL 408 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 +FERFLNP+R+S PD D+DF + RR EVIRY+ +YG +RVAQI TFG+++AKAA++D Sbjct: 409 IFERFLNPERISPPDIDLDFDERRRGEVIRYITEQYGEDRVAQINTFGTIKAKAAIKDSC 468 Query: 463 RALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSRFREARLA--------DPSVDRLLE 513 R L Y+ D++ K +P D + L I D + R A D V ++++ Sbjct: 469 RVLGYDYALGDKISKAMPPDVMGQGIPLAGIFDPNHERYGEAAEVRAQYETDTKVRKVID 528 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 ++ LEGL R HAAG+++ PL ++P++R +T F E+ GL+K D Sbjct: 529 TARGLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDNDGAIITGFPFPQCEEMGLLKMDC 588 Query: 574 LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ LT++ +++ + + R V +DLS +P +D + + LL TLG+FQL+ MR L Sbjct: 589 LGLRNLTVIGDAIEAVKRNRNVDIDLSTLPLEDAKAFELLARGDTLGVFQLDGGPMRNLL 648 Query: 633 EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQ 686 M P DI A+++LYRPGP+ ++ + Y +RKNG+++I+ IHP ++P+L ET Sbjct: 649 RLMAPTKFGDIAAVLALYRPGPMAANSHIEYADRKNGRKEILPIHPELAEALEPILGETY 708 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 +++YQEQVM IA+ L+GYSL AD+LRRAMGKK KE +DK+ RF +G + G + Sbjct: 709 HLVVYQEQVMAIARELAGYSLGGADLLRRAMGKKKKEILDKEFARFSAGMKERGYTDAAV 768 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 ++++L F+ YGFNKSH A Y V+S+ TA++K +YP EF+AA +T D+ +K+ + Sbjct: 769 QALWDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANYPAEFMAALLTSVGDDKDKMAVYL 828 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSL 865 + R+ IQ++PP VN + F + I + L A++ VG I A K ++S Sbjct: 829 AETRRMGIQVLPPDVNESDLRFGAVGDSIRFGLGAVRNVGENVVASIAAARRRKGAYESF 888 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF +VD N+R ++SL+ AGA D G+ R L+ +N ++ + Sbjct: 889 ADFLQKVDIGVCNKRTIDSLIKAGAFDSLGHHRRVLVNVHENAIDAVIITKRAEAIGQFD 948 Query: 926 IFAHEKGTFSDKITLEKFSVENSSVRF------ENEQRVLGFYFSGHPLDVYKPILRKMG 979 +F ++ ++ S + E+ +LG Y S HPL+ + L + Sbjct: 949 LFGDGGAGEEEESPGLGLDLDLSGPEWPKKELLAQERDMLGLYVSSHPLEGAERALDRHR 1008 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW--VTFSEPAKEYEANFFP 1033 + G +++A ++SK ++ K + W VT + E FFP Sbjct: 1009 DTRIVDLAEANDGTTVQIAG-IISKIDRRINKNTAKAWAIVTVEDLDASVEVLFFP 1063 >gi|86742759|ref|YP_483159.1| DNA polymerase III subunit alpha [Frankia sp. CcI3] gi|86569621|gb|ABD13430.1| DNA polymerase III, alpha subunit [Frankia sp. CcI3] Length = 1183 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 347/1076 (32%), Positives = 565/1076 (52%), Gaps = 69/1076 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA + + A PA+ +TD N+F A EF Q A +AG++P Sbjct: 5 SFVHLHVHTEYSMLDGAAKTGLLFKEAAKLGMPAVGMTDHGNMFGAYEFYQGAKSAGVKP 64 Query: 70 IIG---------------------CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108 IIG Q D+D + G + +L + A G Sbjct: 65 IIGIEAYLAPESRHHKRPVLWGERSQRDVDPAGEGGDVSGGGA----YTHMTMLAANAAG 120 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 + L L S + ++ + R+ + + +EG+I TG SG + A Sbjct: 121 LRNLFRL-SSIASIEGYYRKPRMDHELVSQY-SEGIIATTGCPSGEVQTRLRLGQFDKAL 178 Query: 169 KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 T++++FG D ++ L H +R ++ + L +ATN+S +++++ Sbjct: 179 AAAATYQEVFGADNFFLELMDHGLPIERSVRQGLLDIGDKLGLRPLATNDSHYVTQDQAG 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFI 284 +H+VL+ V + R + +YLK+ EM +++ S++P A ++++ IA R Sbjct: 239 SHEVLLCVGTGKKLDDPTRFKFDGSGYYLKSSEEMRNLWDSEVPGACDSSLLIAERVESY 298 Query: 285 LQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 V + +PR+ + + + LR + GL R G A D +R+D Sbjct: 299 DDVFKFVDRMPRYPVPAGE----TQLSWLRKEIDRGLTWRFPAGVPA------DVVERVD 348 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +E+ VI +M F YFL+VAD ++A+ I +GPGRGS GS+ AY L IT+++P+ +L Sbjct: 349 YEVGVIDKMGFPAYFLVVADICKFARDRGIGLGPGRGSATGSMIAYILGITELNPIEHAL 408 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 +FERFLNP+R+S PD D+DF + RR EVIRY+ +YG +RVAQI TFG+++AKAA++D Sbjct: 409 IFERFLNPERISPPDIDLDFDERRRGEVIRYITEQYGEDRVAQINTFGTIKAKAAIKDSC 468 Query: 463 RALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSRFREARLA--------DPSVDRLLE 513 R L Y+ D++ K +P D + L I D + R A D V ++++ Sbjct: 469 RVLGYDYALGDKISKAMPPDVMGQGIPLAGIFDPNHERYGEAAEVRAQYETDTKVRKVID 528 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 ++ LEGL R HAAG+++ PL ++P++R +T F E+ GL+K D Sbjct: 529 TARGLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDNDGAIITGFPFPQCEEMGLLKMDC 588 Query: 574 LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ LT++ +++ + + R V +DLS +P +D + + LL TLG+FQL+ MR L Sbjct: 589 LGLRNLTVIGDAIEAVKRNRNVDIDLSTLPLEDAKAFELLARGDTLGVFQLDGGPMRNLL 648 Query: 633 EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQ 686 M P DI A+++LYRPGP+ ++ + Y +RKNG+++I+ IHP ++P+L ET Sbjct: 649 RLMAPTKFGDIAAVLALYRPGPMAANSHIEYADRKNGRKEILPIHPELAEALEPILGETY 708 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 +++YQEQVM IA+ L+GYSL AD+LRRAMGKK KE +DK+ RF +G + G + Sbjct: 709 HLVVYQEQVMAIARELAGYSLGGADLLRRAMGKKKKEILDKEFARFSAGMKERGYTDAAV 768 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 ++++L F+ YGFNKSH A Y V+S+ TA++K +YP EF+AA +T D+ +K+ + Sbjct: 769 QALWDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANYPAEFMAALLTSVGDDKDKMAVYL 828 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSL 865 + R+ IQ++PP VN + F + I + L A++ VG I A K ++S Sbjct: 829 AETRRMGIQVLPPDVNESDLRFGAVGDSIRFGLGAVRNVGENVVASIAAARRRKGAYESF 888 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF +VD N+R ++SL+ AGA D G+ R L+ +N ++ + Sbjct: 889 ADFLQKVDIGVCNKRTIDSLIKAGAFDSLGHHRRVLVNVHENAIDAVIITKRAEAIGQFD 948 Query: 926 IFAHEKGTFSDKITLEKFSVENSSVRF------ENEQRVLGFYFSGHPLDVYKPILRKMG 979 +F ++ ++ S + E+ +LG Y S HPL+ + L + Sbjct: 949 LFGDGGAGEEEESPGLGLDLDLSGPEWPKKELLAQERDMLGLYVSSHPLEGAERALDRHR 1008 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW--VTFSEPAKEYEANFFP 1033 + G +++A ++SK ++ K + W VT + E FFP Sbjct: 1009 DTRIVDLAEANDGTTVQIAG-IISKIDRRINKNTAKAWAIVTVEDLDASVEVLFFP 1063 >gi|315658035|ref|ZP_07910908.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus lugdunensis M23590] gi|315496925|gb|EFU85247.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus lugdunensis M23590] Length = 1067 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 343/1025 (33%), Positives = 541/1025 (52%), Gaps = 83/1025 (8%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL +H+SY LL +L + +++ K + A+AITDTN L+ +F +A I+PI Sbjct: 6 VHLNIHTSYDLLNSSLKIEDVVAKASKQGYTALAITDTNVLYGYPKFYDACVSANIKPIF 65 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G + + + D L VL EG + +L S + + D+ + Sbjct: 66 G--MTVYITDGLSSV-----------EAVLYALNNEGLTAMYQLSSAIKMKDKS----LV 108 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRHR 190 W+ + + I+ QV +K +K D +YVN Sbjct: 109 PFEWITKYQSNIAIVF----------------KQVEQKHEHILEKFLNDEFIYVNSDSKN 152 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 + R V + +L++ D + L A+ + + + Sbjct: 153 DFGLLR---------------VWLRTARYLNDNDADTIAALQAIKLNEKLDLVNEMDNLN 197 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +H+L+ SE+ + E T +A +C+ +Q H +LP+F K D+ Sbjct: 198 EHFLE-ASELDELTVS-QEEWAQTQALAEKCNAEIQYHQSLLPQF--KTPDN-------- 245 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 + + A L +L Q + ++Y RL+ E +I M F YFLIV+D I +AK + Sbjct: 246 --SSSKAYLWKQLVQRLKTLQLNQKNYIDRLNHEFKIITNMGFEDYFLIVSDLIHYAKTH 303 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 ++ VGPGRGS AGS+ +Y L IT IDP++++LLFERFLNP+R++MPD DIDF RR+ V Sbjct: 304 DVMVGPGRGSSAGSLVSYLLGITTIDPIKYNLLFERFLNPERVTMPDIDIDFEDTRRERV 363 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I YVQ KYG V+ I+TFG L A+A RDVGR + + + KLIP+ ++L Sbjct: 364 IEYVQQKYGEYHVSGIVTFGHLLARAVARDVGRIMGFDEITLAEISKLIPHQLG--ITLN 421 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 D+ +F++ + ++ E+ +KLEGL RH STHAAGI+I D+PL VP+ + Sbjct: 422 QAYDNDKFKDFVHRNYRHEKWFELCKKLEGLPRHTSTHAAGIIINDQPLFNFVPL--TIG 479 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609 +TQ+ M E+ GL+K DFLGL+ L+++ + + + V++D+ IPFDD + + Sbjct: 480 DTGLLTQWTMTEAERLGLLKIDFLGLRNLSIIHQIVTQVKYDLNVEIDIEAIPFDDPKVF 539 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL+ T GIFQLES G+R L+ ++P EDI+A+ SLYRPGP++ I Y R++ Sbjct: 540 ALLSQGETTGIFQLESEGVRHVLQRLKPQHFEDIVAVTSLYRPGPMEEIPTYITRRHEPS 599 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 K+ +HP ++P+LK T GVIIYQEQ+MQIA +G+S EAD+LRRAM KK + ++ ++ Sbjct: 600 KVAYLHPDLEPILKSTYGVIIYQEQIMQIASRFAGFSYGEADILRRAMSKKNRAVLENER 659 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A Sbjct: 660 QHFVEGAQRNGYEEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYA 719 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 ++ + N +K ++A+ I I+PP +N +K IY SL AIKGVG + Sbjct: 720 NILSNVVGNEQKTAAIIEEAKIQGIAILPPHINHSHWFYKATPQGIYLSLGAIKGVGYQS 779 Query: 850 ARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 + I+ ++ F S +DF R+ + R++LESL+ GA D G++R LQ +D Sbjct: 780 VKTIVNNRKEQGNFKSFKDFSKRIPKRIKTRKLLESLILVGAFDSLGHNRATSLQMIDE- 838 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 + T+ +IF T D+I E+ + N E+ LGFY S HP+ Sbjct: 839 ------AVDDITHVGLDIFDIAGMTPKDEI--EEQAELNDLQLSMYEKEYLGFYISKHPV 890 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + K RK + Y + A N+ + +Q +T+KG ++ +V ++ K + Sbjct: 891 E--KMFHRKQFLGIYTLANA---ANHQPILVQFDQIKQIRTKKGQQMAFVVVNDGIKVID 945 Query: 1029 ANFFP 1033 FP Sbjct: 946 GVIFP 950 >gi|28378550|ref|NP_785442.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum WCFS1] gi|28271386|emb|CAD64291.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum WCFS1] Length = 1116 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 338/1029 (32%), Positives = 550/1029 (53%), Gaps = 45/1029 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V LQV S++SLL +++ ++ +A+TD + ++ ++F A I PI Sbjct: 4 YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSTLALTDVDIMYGIVDFYNACRQAEITPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G L++ G+ S+V+L GYQ L+ L + S+ Sbjct: 64 LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 L +L L++LT + N+++ A + T ++ LY+ + Sbjct: 114 AVLPYLNH-----LMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 + + + A H+LP+VA + ++ +DY A VL A+ + Q + + + Sbjct: 169 QA--PALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 H L+ + + + + L L V + QV + + + Sbjct: 227 EGSHCLRPANTVTADYEQL--GLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPAN 284 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR AGL RLA AI Q Y+ RLD EL VI +M F YFLIV D + +A Sbjct: 285 VYLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN R +MPD D+D +RR+ Sbjct: 343 EAQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRRE 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR + ++ IPN H Sbjct: 403 QVLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQ-LHITL 461 Query: 489 LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 QA R + +AD S ++LL E +++LEGL RH STHAAG+V+ +PL Q+VP+ Sbjct: 462 DQAYQGSQRLQNL-VADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQA 520 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 + + +TQ+ +E GL+K DFLGL+ L+L+ +L ++ Q G + ++ I +D Sbjct: 521 GSET-MMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDP 579 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T L T G+FQ ES+G+R L + PD E + A+ +LYRPGP++NI + RK Sbjct: 580 ATLKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKK 639 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+E + + P+L T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK + +D Sbjct: 640 GQEPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVID 699 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +++FI+GA +NG S+ +A +++ + +FA+YGFN+SHA AY+ ++++ A++K HY Sbjct: 700 KMRQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGA 759 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F + M + N K+K++ +ARQ + I+PP +N F I + L++IKG+ Sbjct: 760 FFTSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLR 819 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 ++ E A+ PF SL+ F R+D+K L ++++L++AGA D FG +R +LL S+ Sbjct: 820 RDFIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSV 879 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + A+ + + E++ K +I+L + R E LG Y SG Sbjct: 880 PELMSSAE-LAGGSMSLFESLAPKIKK--QPEISLGE--------RLAKEAEYLGVYVSG 928 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPA 1024 HP++ Y + ++ + + V+T+ + ++K + +T++G + + T S+ + Sbjct: 929 HPVETYDWLAQQR----HTQLVSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLS 984 Query: 1025 KEYEANFFP 1033 E + FP Sbjct: 985 GEIDLTIFP 993 >gi|108800053|ref|YP_640250.1| DNA polymerase III subunit alpha [Mycobacterium sp. MCS] gi|119869179|ref|YP_939131.1| DNA polymerase III subunit alpha [Mycobacterium sp. KMS] gi|126435686|ref|YP_001071377.1| DNA polymerase III subunit alpha [Mycobacterium sp. JLS] gi|108770472|gb|ABG09194.1| error-prone DNA polymerase, DnaE-like / DNA polymerase III, alpha subunit [Mycobacterium sp. MCS] gi|119695268|gb|ABL92341.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. KMS] gi|126235486|gb|ABN98886.1| error-prone DNA polymerase, DnaE-like / DNA polymerase III, alpha subunit [Mycobacterium sp. JLS] Length = 1191 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 347/1003 (34%), Positives = 546/1003 (54%), Gaps = 55/1003 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YS+L+GA + +L + + PAI +TD N+F A EF A AGI+PI Sbjct: 12 FVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKPI 71 Query: 71 IGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 IG + I + + + + + + ++ A G + L +L S Sbjct: 72 IGIEAYIAPASRFETKRVLWGDPSQKSDDVSGSGSYTHMTMVAENATGLRNLFKLSSLAS 131 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 Q + R+ + E EG+I TG SG + + A + ++++FG Sbjct: 132 FEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHQREALEAAAKWREIFGP 190 Query: 181 R-LYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 + ++ L H G D R RE ++++ +P +ATN+ +++ + + H+ L+ + Sbjct: 191 QNFFLELMDH-GLDIERRVREG-LLEIGQKLGIPPLATNDCHYVTRDASQNHEALLCIQT 248 Query: 237 STVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI--L 292 +S R + D +YLK+ +EM +++ S +P A ++T+ IA R V AP + Sbjct: 249 GKTLSDPTRFKFDGDGYYLKSAAEMRALWDSQVPGACDSTLLIAERVQSYADVWAPRDRM 308 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P F E D + + L ++ +AGL+ R + A++ G DY +R ++E+ VI Sbjct: 309 PIFPVPEGHD----QASWLHHEVMAGLKRRFS--AVSGGVVPNDYIERAEYEIKVICDKG 362 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F YFLIVAD I +AK +I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R Sbjct: 363 FPSYFLIVADLINYAKSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPER 422 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYS 470 S PD DIDF RR E++RY NK+G +RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 423 PSAPDIDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFA 482 Query: 471 QVDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQKLEGL 521 DR+ K +P A + + I D + R++EA DP V + E ++ LEGL Sbjct: 483 IADRITKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGL 542 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R+A HA +++ PL +P++R + +T ++ E GL+K DFLGL+ LT+ Sbjct: 543 VRNAGVHACAVIMSSEPLIDAIPLWRRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTI 602 Query: 582 LQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + A RGV +DL + DD + Y LL TLG+FQL+ MR L MQP Sbjct: 603 IGDCIENIKANRGVDLDLESLALDDPKAYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEF 662 Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694 DI+A+++LYRPGP+ Y +RKNG++ I IHP ++ LK ET G+I+YQEQ Sbjct: 663 NDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKEILAETYGLIVYQEQ 722 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 +M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 723 IMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYQGFREGMTANGFSEAAVKALWDTIL 782 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 783 PFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGI 842 Query: 815 QIMPPSVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872 ++PP VN +F VGD+ I + L A++ VG ++ A+K + D+ +++ Sbjct: 843 TVLPPDVNESVQNFASVGDD-IRFGLGAVRNVGANVVASLVNTRAEKGKYSDFSDYLNKI 901 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D N++V ESL+ AGA D G+ R L + +K ++F G Sbjct: 902 DIAACNKKVTESLIKAGAFDSLGHPRKGLFLIHTDAVDSVLGTKKAEAMGQFDLFGSGDG 961 Query: 933 TFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLD 969 + +D FS++ +E+ E+ +LG Y SGHPL+ Sbjct: 962 SGADAGD-SAFSIKVPDEEWEDKHKLALEREMLGLYVSGHPLN 1003 >gi|317508659|ref|ZP_07966315.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] gi|316253062|gb|EFV12476.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] Length = 1180 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 350/1014 (34%), Positives = 546/1014 (53%), Gaps = 81/1014 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+G +N + ++ A PA+ +TD N++ A EF + A G++P Sbjct: 4 SFVHLHNHTEYSMLDGHAQVNAMFEEAARLGMPAVGMTDHGNMWGAAEFYRAAKKYGVKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPS--------------IVLLVSTAEGYQRLIEL 115 IIG + + K F PS + ++ A+G L++L Sbjct: 64 IIGIEAYLAPSSRFST----KREFWGQPSQRSDDVSGSGAYTHMTMVAKDAQGLHNLMKL 119 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S + Q + R+ L E G G+I TG SG + + A + F+ Sbjct: 120 SSLASIEGQLGKWPRMDAEILAEHG-RGIIATTGCPSGEVQTKLRLGQFEEACEAAGRFQ 178 Query: 176 KLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++FG + Y+ L H G D R RE +++L ++P +ATN+ ++ +E H++L Sbjct: 179 EIFGKENFYLELMDH-GIDIERRVRE-DLLRLGERLKIPPLATNDCHYVKQEHARGHEIL 236 Query: 232 MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV-- 287 + V +S R + D +YLK+ M + + S +P A +NT+ +A + +V Sbjct: 237 LCVQTGKTMSDPGRFKFDGDGYYLKSAELMRAAWDSQVPGACDNTLRVAEQVGSYDEVWE 296 Query: 288 ---HAPILPRFIEKECDDIQKEEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQRLDF 343 P+ P E++N K V GLE R G A++YR R F Sbjct: 297 KRDRMPVFPV--------PDGEDQNSWLAKEVDRGLERRFPDGV------AEEYRARAAF 342 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL+VI + F YFL+V D I +A+ I VGPGRGS AGS+ +YAL IT++DP+ LL Sbjct: 343 ELDVIKQKGFPSYFLVVGDLIAYARSVGIRVGPGRGSAAGSLVSYALGITNLDPIEHGLL 402 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R S PD DIDF RR E+IRY K+G +RVAQ+ITFG+++ KAA++D R Sbjct: 403 FERFLNPERPSAPDIDIDFDDRRRGEMIRYASEKWGADRVAQVITFGTIKTKAAIKDSAR 462 Query: 464 AL--QMPYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVDRLL 512 L Q +S DR+ K +P A + L I D R++EA +DP V ++ Sbjct: 463 VLHGQPGFSIADRITKALPPAIMAKDIPLSGITDPEHERYKEAAEIRELIASDPDVAKIY 522 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 E + LEGL R+A HA I++ + PL +P+++ + +T ++ E GL+K D Sbjct: 523 ETALSLEGLIRNAGVHACAIIMSNEPLIDTIPLWKRAQDGAIITGWDYPSCEDIGLLKMD 582 Query: 573 FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGL+ LT++ +++ + Q RG+++DL +P D T+ LL+ TLG+FQL+ MR Sbjct: 583 FLGLRNLTVIGDAIENIRQNRGIELDLETVPLTDPATFALLSRGETLGVFQLDGGPMRDL 642 Query: 632 LEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ET 685 L M+P DI+A++SLYRPGP ++ Y +RKNG+++I IHP ++ LK ET Sbjct: 643 LRRMRPTGFGDIVAVLSLYRPGPMGVNAHNDYADRKNGRQQIKPIHPELEEPLKEILAET 702 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+I+YQEQ+M IAQ ++ YS+ +AD LR+AMGKK E + + E F +G NG S+ Sbjct: 703 YGLIVYQEQIMFIAQKVASYSMGKADALRKAMGKKKLEVLQAEYEGFAAGMLGNGFSEAA 762 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 +++ + FADY FNKSHAA Y +++Y TA++K +YP E++AA +T D+ +K + Sbjct: 763 IKALWDTVLPFADYAFNKSHAACYGLVAYWTAYLKANYPAEYMAALLTSVGDDKDKAAVY 822 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864 D R+ I ++ P VN VDF I + L+A++ VG I+ A+ F S Sbjct: 823 LADCRKMGITVLAPDVNKSRVDFAAVGEDILFGLSAVRNVGVGLVESIIRTREAEGAFTS 882 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRT 920 D+ ++ D N++ +ESL+ AG D G+ R L +++D + + + + Sbjct: 883 FSDYLAKADIAACNKKAVESLIKAGGFDALGHPRKGLYLVHAEAVDAVMGTKKAEAQGQY 942 Query: 921 NKHENIFAHEKG------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 + + F E G TF +I E++ ++ + E+ +LG Y SGHPL Sbjct: 943 DLFSDFF--ESGSPELASTFETQIPDEEWDMKQ---KLALEREMLGLYVSGHPL 991 >gi|325674398|ref|ZP_08154086.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus equi ATCC 33707] gi|325554658|gb|EGD24332.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus equi ATCC 33707] Length = 1178 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 349/1074 (32%), Positives = 568/1074 (52%), Gaps = 71/1074 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + + + A+ +TD N++ A EF A GI+P Sbjct: 4 SFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNSAKKHGIKP 63 Query: 70 IIGCQLDIDMQD--NLKMTNQGKTPFPTVPS-----------IVLLVSTAEGYQRLIELV 116 IIG + + + N K G P+ S + ++ + G + L +L Sbjct: 64 IIGIEAYVAPESRFNTKRVLWGD---PSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLS 120 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S + Q + R+ L EG+I TG SG I + A + +++ Sbjct: 121 SLASIEGQLGKWPRMDEE-LIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQE 179 Query: 177 LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++G D ++ L H +R ++ + +P +ATN+ +++++ E H+ L+ + Sbjct: 180 IWGKDNFFLELMDHGLSIERRVREGLLSIGRQLGIPPLATNDCHYVTKDAAENHEALLCI 239 Query: 235 AHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV--HAP 290 +S R + D +YLK+ EM +I+ S++P A +N+V I R V H Sbjct: 240 QTGKTLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRD 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 +P F E + + + L + + GL+ R G ++Y +R ++E+ VI + Sbjct: 300 RMPIFPVPEGE----TQASWLHKEVMRGLDRRFPAGP------PREYIERAEYEIGVINQ 349 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F YFL+V D I A++ I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP Sbjct: 350 MGFPAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNP 409 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468 +R+SMPD DIDF RR E++RY +K+G ++VAQ+ITFG+++ KAA++D R Q Sbjct: 410 ERVSMPDIDIDFDDRRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPG 469 Query: 469 YSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREARL------ADPSVDRLLEISQKLE 519 ++ D++ K +P A +S+ I D R++EA ++P V ++ + ++ LE Sbjct: 470 FAIADQITKALPPPIMAKDISVSGITDPEHERYKEAVEVRALIDSNPDVAKIYQTAKGLE 529 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R+A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ L Sbjct: 530 GLIRNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNL 589 Query: 580 TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +++ + A RGV +DL +P +D TY LL TLG+FQL+ S MR L MQP Sbjct: 590 TVIGDAIENIKANRGVDIDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPT 649 Query: 639 CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692 EDI+A+++LYRPGP+ Y +RKNG++ + IHP ++ LKE T G+I+YQ Sbjct: 650 GFEDIVAVLALYRPGPMGMNAHNDYADRKNGRQDVKPIHPELEEPLKEILADTFGLIVYQ 709 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQ+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+ + F G NG S+ +++ Sbjct: 710 EQIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMKANGFSQAAITALWDT 769 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNKSHAA Y ++S+ TA++K +YP E++A +T D+ +K + D R+ Sbjct: 770 VLPFAGYAFNKSHAAGYGLVSFWTAYLKANYPSEYMAGLLTSVGDDKDKAAVYLSDCRKM 829 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871 I ++PP VN VDF I + L A++ VG I+ A +K F D+ ++ Sbjct: 830 GITVLPPDVNASRVDFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGSFTDFSDYLNK 889 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +D+ +++V ESL+ AG D G+ R L+ + +K ++F Sbjct: 890 IDALACSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFG--- 946 Query: 932 GTFSDKITLEKFSVE------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 G +D+ F+V+ +S + E+ +LG Y SGHPL+ + +L + Sbjct: 947 GDDADESITSVFNVKVPDEEWDSKHKLALEREMLGLYVSGHPLNGVEHVLAAQS----DT 1002 Query: 986 SVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 S+ I G + + ++ S ++ + G + + E FFP Sbjct: 1003 SIPVILEGDIKDGTQVTVGGILASVNRRINKNGLTWASAQLEDLSGGIEVLFFP 1056 >gi|312140121|ref|YP_004007457.1| DNA polymerase iii alpha subunit dnae1 [Rhodococcus equi 103S] gi|311889460|emb|CBH48777.1| DNA polymerase III alpha subunit DnaE1 [Rhodococcus equi 103S] Length = 1178 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 349/1074 (32%), Positives = 568/1074 (52%), Gaps = 71/1074 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + + + A+ +TD N++ A EF A GI+P Sbjct: 4 SFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNSAKKHGIKP 63 Query: 70 IIGCQLDIDMQD--NLKMTNQGKTPFPTVPS-----------IVLLVSTAEGYQRLIELV 116 IIG + + + N K G P+ S + ++ + G + L +L Sbjct: 64 IIGIEAYVAPESRFNTKRVLWGD---PSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLS 120 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S + Q + R+ L EG+I TG SG I + A + +++ Sbjct: 121 SLASIEGQLGKWPRMDEE-LIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQE 179 Query: 177 LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++G D ++ L H +R ++ + +P +ATN+ +++++ E H+ L+ + Sbjct: 180 IWGKDNFFLELMDHGLSIERRVREGLLSIGRQLGIPPLATNDCHYVTKDAAENHEALLCI 239 Query: 235 AHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV--HAP 290 +S R + D +YLK+ EM +I+ S++P A +N+V I R V H Sbjct: 240 QTGKTLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRD 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 +P F E + + + L + + GL+ R G ++Y +R ++E+ VI + Sbjct: 300 RMPIFPVPEGE----TQASWLHKEVMRGLDRRFPAGP------PREYIERAEYEIGVINQ 349 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F YFL+V D I A++ I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP Sbjct: 350 MGFPAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNP 409 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468 +R+SMPD DIDF RR E++RY +K+G ++VAQ+ITFG+++ KAA++D R Q Sbjct: 410 ERVSMPDIDIDFDDRRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPG 469 Query: 469 YSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREARL------ADPSVDRLLEISQKLE 519 ++ D++ K +P A +S+ I D R++EA ++P V ++ + ++ LE Sbjct: 470 FAIADQITKALPPPIMAKDISVSGITDPEHERYKEAVEVRALIDSNPDVAKIYQTAKGLE 529 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R+A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ L Sbjct: 530 GLIRNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNL 589 Query: 580 TLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +++ + A RGV +DL +P +D TY LL TLG+FQL+ S MR L MQP Sbjct: 590 TVIGDAIENIKANRGVDIDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPT 649 Query: 639 CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692 EDI+A+++LYRPGP+ Y +RKNG++ + IHP ++ LKE T G+I+YQ Sbjct: 650 GFEDIVAVLALYRPGPMGMNAHNDYADRKNGRQDVKPIHPELEEPLKEILADTFGLIVYQ 709 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQ+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+ + F G NG S+ +++ Sbjct: 710 EQIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMKANGFSQAAITALWDT 769 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNKSHAA Y ++S+ TA++K +YP E++A +T D+ +K + D R+ Sbjct: 770 VLPFAGYAFNKSHAAGYGLVSFWTAYLKANYPSEYMAGLLTSVGDDKDKAAVYLSDCRKM 829 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSR 871 I ++PP VN VDF I + L A++ VG I+ A +K F D+ ++ Sbjct: 830 GITVLPPDVNASRVDFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGSFTDFSDYLNK 889 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +D+ +++V ESL+ AG D G+ R L+ + +K ++F Sbjct: 890 IDALACSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFG--- 946 Query: 932 GTFSDKITLEKFSVE------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 G +D+ F+V+ +S + E+ +LG Y SGHPL+ + +L + Sbjct: 947 GDDADESITSVFNVKVPDEEWDSKHKLALEREMLGLYVSGHPLNGVEHVLAAQS----DT 1002 Query: 986 SVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 S+ I G + + ++ S ++ + G + + E FFP Sbjct: 1003 SIPVILEGDIKDGTQVTVGGILASVNRRINKNGLTWASAQLEDLSGGIEVLFFP 1056 >gi|260662144|ref|ZP_05863040.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus fermentum 28-3-CHN] gi|260553527|gb|EEX26419.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus fermentum 28-3-CHN] Length = 1099 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 358/1044 (34%), Positives = 536/1044 (51%), Gaps = 95/1044 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FV L V S YSLLE + ++ A+ + D L+ A+ F ++A AG+ P Sbjct: 2 GFVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG L + + + LL A GYQ L L +R + D+ Q + Sbjct: 62 VIGVSLPLTFAEG-------------TLDVTLLAKGAVGYQNLTRLSTRA-MTDRANQPL 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 I L+E+ + ++++ + S+ T+ +L D L +NL Sbjct: 108 TI--EDLREVSDDLVVIVA-------PQLMLLGVSEQ------TYAQLGEVADYLGINLD 152 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRP 246 + + +A LPL+A +L+E+DY A VL A+ A T+ Sbjct: 153 ----FTAAERQDLQAVAERCGLPLIALEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKAS 208 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALE--NTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + T H+L+ E+ + + A TV +A RC P+LP F + Sbjct: 209 QRTGRHWLRPAEEVAAAYRAAGLAEAAAQTVAVAERCQVHFADQTPVLPAFPTPAGQGV- 267 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR GL R G A +Y+ RL+ EL VI +M F YFLIV D + Sbjct: 268 ---ADYLRELCQRGLAKRKLAGDPA------EYQARLEHELTVIHQMGFDNYFLIVWDLM 318 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A ++ I GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNP+R MPD D+D Sbjct: 319 NFAHQHQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPD 378 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----- 479 +RR+EV+ Y+ + YGHERVAQIITFGSL K LRDV R +P QV+ L ++I Sbjct: 379 NRREEVLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVESLSQVIDRVKG 438 Query: 480 PN-------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 P+ + A PV Q +A DS+ V LLE++ KLEGL RH S HAAG+ Sbjct: 439 PHQTLADLLESAQPV--QNLARDSKL---------VACLLEVAAKLEGLPRHDSIHAAGV 487 Query: 533 VIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 V+ PL + VP+ + + VTQF +E GL+K D LGL+ LT ++ +L+ + Q Sbjct: 488 VLAAEPLIKTVPLQAGNEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQ 547 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 DL+ I +D T L T GIFQ ESSG+RQ L + PD E+I+A+ +LYR Sbjct: 548 HQPDFDLTHIALNDRPTLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYR 607 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + RK G+E + + P+L T G+++YQEQVMQ+A ++ G+SL EAD Sbjct: 608 PGPMDNINHFIARKKGQEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEAD 667 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAM KK M KE F++GA+K G +A +F + +FA+YGFN+SHA AY+ Sbjct: 668 LLRRAMSKKKLATMASMKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRSHAVAYSK 727 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++++ A++K H+P EFLAA M + D K+ + +A+Q I P++N + Sbjct: 728 MAFEMAYLKVHFPAEFLAALMETDPDT-SKVWAYFSEAKQLGITTHGPAINQSQERVSLV 786 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 D ++ L IKG+ R I+E + P+ L D +R+D+K + L+ AGA Sbjct: 787 DQELWLGLDMIKGLRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEALFVPLIDAGA 846 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 LD GY+R ++ + L I + A++ G + ++ +V Sbjct: 847 LDHLGYNRAEMAEGLKAILEGAEYA--------------GLGLGMAPVVAQRNEYP-LAV 891 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKT 1009 R E VLG Y SGHP+ Y+ + K+ + +VA +R N +RL MV ++ T Sbjct: 892 RLAREHAVLGTYLSGHPVSQYQDLRTKLKLP----TVAQLRPNQRVRLVLMVTRMRKVTT 947 Query: 1010 RKGSR-IGWVTFSEPAKEYEANFF 1032 ++ + + ++T S+ E F Sbjct: 948 KREHKPMAFLTASDETGAVEVTIF 971 >gi|183982382|ref|YP_001850673.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium marinum M] gi|183175708|gb|ACC40818.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium marinum M] Length = 1180 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 340/1003 (33%), Positives = 537/1003 (53%), Gaps = 57/1003 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL H+ YS+L+GA + +L ++ PAI +TD N+F A EF A AG+ Sbjct: 6 SRSFVHLHNHTEYSMLDGAAKITPMLAEVERLDMPAIGMTDHGNMFGASEFYNSATKAGV 65 Query: 68 QPIIGCQLDIDMQ---DNLKMT-------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + + D ++T + + + ++ A G + L +L S Sbjct: 66 KPIIGVEAYVAPGSRFDTRRITWGDPSQKGDDVSGSGSYTHLTMVAENATGLRNLFKLSS 125 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Q + R+ + E EG+I TG SG + + A + ++++ Sbjct: 126 LASFEGQLGKWSRMDAELVAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWREI 184 Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG D ++ L H +R ++++ ++P +ATN+ +++ + H+ L+ V Sbjct: 185 FGADNYFLELMDHGLSIERRVREGLIEIGRKLDIPPLATNDCHYVTRDAAHNHEALLCVQ 244 Query: 236 HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI-- 291 +S +R + D +YLK+ +EM ++ D +P A ++T+ IA R V P Sbjct: 245 TGKTLSDPNRFKFDGDGYYLKSAAEMRQLWDDDIPGACDSTLLIAERVQSYADVWTPRDR 304 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P F E D + L ++ +AGL R G QDY R ++E+ VI Sbjct: 305 MPIFPVPEGHD----PASWLHHEVMAGLRRRFPSGL------GQDYIDRAEYEIKVICDK 354 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFLIVAD I +A+ +I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+ Sbjct: 355 GFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPE 414 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469 R S PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAAL+D R Q + Sbjct: 415 RPSAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGF 474 Query: 470 SQVDRLCKLIPND-PAHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEG 520 + DR+ K +P A + L I D + RF+EA DP V + + ++ LEG Sbjct: 475 AIADRITKALPPPIMAKDIPLSGITDPAHERFKEAAEVRGLIETDPDVRTIYQTARGLEG 534 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT Sbjct: 535 LIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 594 Query: 581 LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ +++ + A RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 595 IIGDAIENIKANRGIDLDLESLPLDDKPTYELLGRGETLGVFQLDGGPMRDLLRRMQPTE 654 Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQE 693 DI+A+++LYRPGP+ Y +RKN ++ + IHP L +P+ L ET G+I+YQE Sbjct: 655 FNDIVAVLALYRPGPMGMNAHNDYADRKNNRQAVKPIHPELEEPLREILSETYGLIVYQE 714 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 Q+M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 715 QIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTI 774 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ Sbjct: 775 LPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLG 834 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872 I ++PP VN V+F I + L A++ VG ++ + K F D+ +++ Sbjct: 835 ITVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIGTRSGKGKFTDFSDYLNKI 894 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D N++V ESL+ AGA D G+ R L + +K ++F Sbjct: 895 DISACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG--- 951 Query: 933 TFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLD 969 SD F+++ +E+ E+ +LG Y SGHPL+ Sbjct: 952 --SDSGADAVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLN 992 >gi|118617195|ref|YP_905527.1| DNA polymerase III subunit alpha [Mycobacterium ulcerans Agy99] gi|118569305|gb|ABL04056.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium ulcerans Agy99] Length = 1180 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 340/1003 (33%), Positives = 537/1003 (53%), Gaps = 57/1003 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL H+ YS+L+GA + +L ++ PAI +TD N+F A EF A AG+ Sbjct: 6 SRSFVHLHNHTEYSMLDGAAKITPMLAEVERLDMPAIGMTDHGNMFGASEFYNSATKAGV 65 Query: 68 QPIIGCQLDIDMQ---DNLKMT-------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + + D ++T + + + ++ A G + L +L S Sbjct: 66 KPIIGVEAYVAPGSRFDTRRITWGDPSQKGDDVSGSGSYTHLTMVAENATGLRNLFKLSS 125 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Q + R+ + E EG+I TG SG + + A + ++++ Sbjct: 126 LASFEGQLGKWSRMDAELVAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWREI 184 Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG D ++ L H +R ++++ ++P +ATN+ +++ + H+ L+ V Sbjct: 185 FGADNYFLELMDHGLSIERRVREGLIEIGRKLDIPPLATNDCHYVTRDAAHNHEALLCVQ 244 Query: 236 HSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPI-- 291 +S +R + D +YLK+ +EM ++ D +P A ++T+ IA R V P Sbjct: 245 TGKTLSDPNRFKFDGDGYYLKSAAEMRQLWDDDIPGACDSTLLIAERVQSYADVWTPRDR 304 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P F E D + L ++ +AGL R G QDY R ++E+ VI Sbjct: 305 MPIFPVPEGHD----PASWLHHEVMAGLRRRFPSGL------GQDYIDRAEYEIKVICDK 354 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFLIVAD I +A+ +I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+ Sbjct: 355 GFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPE 414 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469 R S PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAAL+D R Q + Sbjct: 415 RPSAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGF 474 Query: 470 SQVDRLCKLIPND-PAHPVSLQAIADDS--RFREAR------LADPSVDRLLEISQKLEG 520 + DR+ K +P A + L I D + RF+EA DP V + + ++ LEG Sbjct: 475 AIADRITKALPPPIMAKDIPLSGITDPAHERFKEAAEVRGLIETDPDVRTIYQTARGLEG 534 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT Sbjct: 535 LIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 594 Query: 581 LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ +++ + A RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 595 IIGDAIENIEANRGIDLDLESLPLDDKPTYELLGRGETLGVFQLDGGPMRDLLRRMQPTE 654 Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIYQE 693 DI+A+++LYRPGP+ Y +RKN ++ + IHP L +P+ L ET G+I+YQE Sbjct: 655 FNDIVAVLALYRPGPMGMNAHNDYADRKNNRQAVKPIHPELEEPLREILSETYGLIVYQE 714 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 Q+M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 715 QIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTI 774 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ Sbjct: 775 LPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLG 834 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872 I ++PP VN V+F I + L A++ VG ++ + K F D+ +++ Sbjct: 835 ITVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIGTRSGKGKFTDFSDYLNKI 894 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D N++V ESL+ AGA D G+ R L + +K ++F Sbjct: 895 DISACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG--- 951 Query: 933 TFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLD 969 SD F+++ +E+ E+ +LG Y SGHPL+ Sbjct: 952 --SDSGADAVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLN 992 >gi|218283532|ref|ZP_03489522.1| hypothetical protein EUBIFOR_02112 [Eubacterium biforme DSM 3989] gi|218215800|gb|EEC89338.1| hypothetical protein EUBIFOR_02112 [Eubacterium biforme DSM 3989] Length = 989 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 355/1005 (35%), Positives = 538/1005 (53%), Gaps = 81/1005 (8%) Query: 44 IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103 + +TD N ++ +EF Q + IIG ++D + + PF +LL Sbjct: 13 VCLTDHNVMYGTMEFYQLCKKHNVHAIIGLEVD---------SIYNEEPF----HFILLA 59 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFN 162 G Q L +L S + K++V S+ + I + ++LT SS D + Sbjct: 60 KNDMGLQNLYKLSSII------KENV----SFDEVIKYAKDCVVLT--SSDGKDTFSAYI 107 Query: 163 SSQVAEKRLLTFKKL----FGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNS 217 Q EK L F +L F D YV++ + G R + QL + VA + Sbjct: 108 EHQDLEK-LSAFVELCKNSFSD-FYVSISMNDSGKKRVDNKILKQL----DCKCVALSRI 161 Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 L+ ED ++ L A+A T + + V YL++ EM +++ + L T +I Sbjct: 162 LYEKSEDVKSLQALRAIAKQTSIENQGLD-VQFQRYLRSPQEMEALYDECD--LLATEQI 218 Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337 AR C+ + LP F K + + + L GLE RL G Y Sbjct: 219 ARMCNVQMAFQKSKLPVFENK----LHIDSSDYLVKLCKKGLEKRL------NGNLDAVY 268 Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397 RL++EL+VI M F+ YFLIV DFI++A+ +I VGPGRGS AGS+ AY L IT IDP Sbjct: 269 MNRLEYELSVIINMGFTDYFLIVWDFIRYARSKDIFVGPGRGSAAGSLVAYCLGITHIDP 328 Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457 ++ +LLFERFLNP R+SMPD D DF DRRDEVIRYV+ YG + V+ I+TF +LQA+ A Sbjct: 329 IQNNLLFERFLNPSRISMPDIDTDFPDDRRDEVIRYVRKLYGQDHVSHIVTFNTLQARQA 388 Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517 +RDVGR + +P VD L K++ N P + +QA D++ FR+ +D + L ++ Sbjct: 389 IRDVGRVMNIPARIVDELSKMLKNTPKITL-MQAYNDNALFRKRIQSDQKLIELFQMCVS 447 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EGL RH S HAAGIV+ D+P+ + P+ V D+ TQF +++E GLIK DFLG++ Sbjct: 448 IEGLPRHTSLHAAGIVLSDQPIVNVCPLV-SVDGDIQATQFTAEYLEDLGLIKMDFLGIR 506 Query: 578 TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT + + + L Q+ + +D+ I D +TY LL+ TLG+FQLESSG+ L+ +Q Sbjct: 507 NLTTIHEIVTNLKEQKHISLDMMKINLKDAKTYQLLSLGNTLGVFQLESSGITTLLQKIQ 566 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 P+ IEDI +++LYRPG + +I Y RK K+V HPL++P+LKET G++IYQEQVM Sbjct: 567 PNKIEDISVVLALYRPGAMQHIDTYIERKKDPSKVVYPHPLLEPILKETYGIMIYQEQVM 626 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 Q AQ++ G+SL++AD LR+AM KK + M KE+FI GA KN I +++ IF ++ +F Sbjct: 627 QTAQVIGGFSLAQADTLRKAMSKKKLDVMQNLKEQFILGARKNRIKDSVSNEIFSIMEQF 686 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A YGFNKSH+ AY++++YQ A++K +YP+ F + + + + K ++ + ++ NI + Sbjct: 687 AGYGFNKSHSYAYSLVAYQMAYLKANYPLYFYQSLLNSVIGSGIKTSQYIYECKRRNIVV 746 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 +N + + N I L +KGVG T I+E P+ L DF ++ K Sbjct: 747 NGCDINHSKAFYTIEQNSIRMPLQVLKGVGKTIYPTIIEHV---PYTDLFDFLAKASMYK 803 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 +N + L+ GALDCFGY+R L ++L + Y V N F+ Sbjct: 804 INESTIRILIDGGALDCFGYNRATLNENLRKLMDYVNIVRIEDPNDLRFDFSIVSRPGIQ 863 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK--------PILRKMGIKGYEESVA 988 +I EN + + EQ V GFY S HP+ + P+L + GY Sbjct: 864 RIK------ENPIQKAQKEQYVYGFYVSEHPVQSLRMHKYPNCIPLLNAVNRDGY----- 912 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + V S + KT+KG + +++ + A + +A P Sbjct: 913 ------MNILVRVASFRTHKTKKGDWMCFMSVEDEAGKMDAVIMP 951 >gi|54023768|ref|YP_118010.1| DNA polymerase III subunit alpha [Nocardia farcinica IFM 10152] gi|54015276|dbj|BAD56646.1| putative DNA polymerase III alpha subunit [Nocardia farcinica IFM 10152] Length = 1196 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 340/1009 (33%), Positives = 544/1009 (53%), Gaps = 55/1009 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL H+ YS+L+GA ++ + + A+ +TD N++ A EF A G+ Sbjct: 19 SGSFVHLHNHTEYSMLDGAAKISPLFTEAKRLGMTAVGMTDHGNMYGASEFYNSAKKHGL 78 Query: 68 QPIIGCQLDIDMQDN-----LKMTNQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVS 117 +PIIG + I ++ + G+ S + ++ A G + L +L S Sbjct: 79 KPIIGIEAYIAPGSRFDTKRVQWGDPGQKGDDVSGSGAYTHMTMVAENATGLRNLFKLSS 138 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + Q + R+ + + EG+I TG SG + + A + ++++ Sbjct: 139 LASIEGQLGKWARMDAEIIAQ-HAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWQEI 197 Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG D ++ + H +R ++ + +P +ATN+ ++ E D H+ L+ V Sbjct: 198 FGPDNFFLEVMDHGLSIERRVREGLLDIGRKLGIPPLATNDCHYVYESDAANHEALLCVQ 257 Query: 236 HSTVVSQKDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV--HAPI 291 +S R + +YLK+ EM +I+ +++P A +NT+ I R V H Sbjct: 258 TGKTLSDPTRFKFDGSGYYLKSGDEMRAIWDAEVPGACDNTLLIGERVQSYDAVWEHRDR 317 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +P F E + + + L + + GLE R G ++Y +R ++EL+VI M Sbjct: 318 MPIFPVPEGE----TQASWLHKEVMRGLERRFPNGV------PEEYLRRAEYELDVICEM 367 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFL+V D I A++ I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+ Sbjct: 368 GFPAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPE 427 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469 R+SMPD DIDF RR E++RY K+G +RVAQ+ITFG+++ KAA++D R Q + Sbjct: 428 RVSMPDIDIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGF 487 Query: 470 SQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVDRLLEISQKLEG 520 + D++ K +P A + L I D R++EA +P V ++ E ++ LEG Sbjct: 488 AIADQISKALPPPIMAKDIPLSGIMDPEHERYKEAAEVRELIANNPDVAKIYETARGLEG 547 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R+A HA +++ PL +P+++ + +T ++ E GL+K DFLGL+ LT Sbjct: 548 LIRNAGVHACAVIMSSEPLMDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 607 Query: 581 LLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ +LD + A RG+ +D+ +P DD TY LL+ TLG+FQL+ S MR L MQP Sbjct: 608 VIGDALDNIKANRGIDLDMDNLPLDDPATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTG 667 Query: 640 IEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQE 693 EDI+A+++LYRPGP+ Y +RKNG++++ IHP ++ LK +T G+I+YQE Sbjct: 668 FEDIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKDILADTYGLIVYQE 727 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 Q+MQIAQ ++GYSL AD+LRRAMGKK E ++ + E F +G +NG SK +++ + Sbjct: 728 QIMQIAQKVAGYSLGRADILRRAMGKKKAEVLEAEFEGFEAGMLENGFSKPAIKALWDTI 787 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSHAA Y ++S+ TA++K +YP E++A +T D+ +K + D R+ Sbjct: 788 LPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRRLG 847 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRV 872 I ++PP VN +F I + L A++ VG I++A +K F D+ +++ Sbjct: 848 ITVLPPDVNESEQNFASVGKDIRFGLGAVRNVGANVVASIIQARKEKSKFTDFSDYLNKI 907 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D+ ++V ESL+ AGA D G+ R L+ + +K ++F G Sbjct: 908 DAIACTKKVTESLIKAGAFDSLGHPRKGLMLIHSDAIDAVMATKKAEAIGQFDLFG---G 964 Query: 933 TFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPIL 975 +D+ F+V+ +E E+ +LG Y SGHPL+ + +L Sbjct: 965 MDADESVTSVFNVKVPDEEWETKHKLALEREMLGLYVSGHPLNGVEHVL 1013 >gi|307128611|ref|YP_003880641.1| DNA polymerase III subunit alpha [Candidatus Sulcia muelleri CARI] gi|306483073|gb|ADM89943.1| DNA polymerase III, alpha subunit [Candidatus Sulcia muelleri CARI] Length = 1379 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 332/1010 (32%), Positives = 540/1010 (53%), Gaps = 75/1010 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 F H+ H+S+S+L + +N+++ K A+ ITD N+ F +K Sbjct: 211 FSHIHNHTSFSILSSTIDINSLIKKTIEYNMDAVGITDYGNMMGVFNFIKKIKNLNDNNN 270 Query: 67 -IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 I+PIIGC+L I +K + + P + V GY L +L S ++ Sbjct: 271 KIKPIIGCELFISYNYLIKKFTK-QNP-DKIYHQVFFAKNKNGYNNLSKLCSHGFIDGYY 328 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 RI + +++ E LI ++G + I AEK + LFGD Y+ Sbjct: 329 SGIPRIGKNLIEKY-KENLIAISGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDDFYIE 387 Query: 186 LQRHRGYDRYRESQVVQLAYT--HELPLVATNNSLFLSEEDYEAHDVLMAVAHS----TV 239 + RH G + + L ++ + + +A NN+ +LS++DY AHD+L+ V +S T Sbjct: 388 ILRH-GLEEEDHVNKILLKFSKKYNVKFIAQNNNFYLSQKDYNAHDILLCVKNSQKQSTP 446 Query: 240 VSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + + R + Y KN+ +M ++FSDLPEA +N E+ + F + +LP+F Sbjct: 447 IGKGKGFRFGFPNKEFYFKNKFQMYNLFSDLPEAFDNLKELIEKVEFYDISNQILLPKF- 505 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQD-YRQRLDFELNVIARMKF 353 +I + + NK +R +GA K D +++++FEL I ++ + Sbjct: 506 -----NIPNKWIKKNCNKNNENEYLRFLTYKGAKKKYIDLNDRIKKKIEFELETIKKIGY 560 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIV D I AK I VGPGRGS AGSV AY L IT+IDP++++LLFERFLNPDR+ Sbjct: 561 PGYFLIVQDLIFKAKNIGIEVGPGRGSVAGSVVAYCLGITNIDPIKYNLLFERFLNPDRV 620 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 S+PD DIDF R+++I +V NKYG +VAQIIT+G + AK+++RD R L + + + Sbjct: 621 SLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDTARVLNLTLLETN 680 Query: 474 RLCKLIPN-DPAHPVSLQAIADDSRFREARLADPSV------------DRLLEISQKLEG 520 ++ K++PN + + + L + ++L+ + +EG Sbjct: 681 KIAKIVPNLSLKEIIKKKIKSLKEILNNEELENVIKLKKIFKKKNTLQSKILKQAMVIEG 740 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 R+ HA GI+I + +P+ S+ +TQF+ +EK GL+K DFLGLKTLT Sbjct: 741 SVRNTGIHACGIIITPSDIKDYIPVSTTKDSNFLLTQFDNDVVEKVGLLKMDFLGLKTLT 800 Query: 581 LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 +++++L ++ + L IP DD +TY L T+ +FQ ES GM++ L ++PD Sbjct: 801 IIKETLYLISN----LKLENIPLDDVKTYELFKKGETVAVFQYESPGMQKYLIQLKPDKF 856 Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 D+IA+ +LYRPGP+ I + RK+G EKI P + L+ET G+ +YQEQVM I+Q Sbjct: 857 YDLIAMNALYRPGPMQYIPNFIARKHGLEKISYDLPELKEFLEETYGITVYQEQVMLISQ 916 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 +SG+S +AD LR+A+GKK K+ + K K +FI G KNG S I I++ FA Y Sbjct: 917 KISGFSKGDADFLRKAIGKKDKKILFKIKNKFIYGGLKNGFSIKILEKIWKDWKAFASYA 976 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSH+ Y+ I++QTA++KTHYP E++A+ ++ M ++ + F ++ ++ + ++ P Sbjct: 977 FNKSHSTCYSYIAFQTAYLKTHYPAEYMASVLSNNMQKIKNVTFFIEECKRIGVIVLGPD 1036 Query: 821 VNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879 +N F V I + L AIKG+G ++ + I++ ++ ++S+ + VD + +N+ Sbjct: 1037 INESNYKFTVNKMGYIRFGLGAIKGIGESSVKSILKERKNR-YNSILELIKNVDLRLVNK 1095 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---------- 929 +VLE+LV +GA D +L+NI +Y + E+N +N E + Sbjct: 1096 KVLENLVLSGAFD-----------NLNNIHRYQYFYEENGSNMIEKMIKFGVKYKKLKKN 1144 Query: 930 -EKGTFSDKITLE----KFSV---ENSSVRFENEQRVLGFYFSGHPLDVY 971 + F + +E KF + N+ + E+ V+G Y + HPL+ Y Sbjct: 1145 VKNTLFRNVKDIEILEPKFKICKEWNNFYKLNKEKEVIGMYMTSHPLNEY 1194 >gi|118469839|ref|YP_887493.1| DNA polymerase III subunit alpha [Mycobacterium smegmatis str. MC2 155] gi|118171126|gb|ABK72022.1| DNA polymerase III alpha subunit [Mycobacterium smegmatis str. MC2 155] Length = 1184 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 351/1006 (34%), Positives = 543/1006 (53%), Gaps = 61/1006 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL H+ YS+L+GA + +L + + PAI +TD N+F A EF A AGI Sbjct: 9 SGSFVHLHNHTEYSMLDGAAKITPMLAEAQRLEMPAIGMTDHGNMFGASEFYNSATKAGI 68 Query: 68 QPIIGCQLDIDMQ---DNLKMT--NQGKTPFPTVPS-----IVLLVSTAEGYQRLIELVS 117 +PIIG + I D ++T + G+ S + ++ A G + L +L S Sbjct: 69 KPIIGIEAYIAPGSRFDTKRVTWGDPGQKGDDVSGSGAYTHMTMVAENATGLRNLFKLSS 128 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Q + R+ + E EG+I TG SG + + A + ++++ Sbjct: 129 LASFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWREI 187 Query: 178 FG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 FG + ++ L H G D R RE ++++ +P +ATN+ +++ E H+ L+ Sbjct: 188 FGPENFFLELMDH-GLDIERRVREG-LLEIGRKLGIPPLATNDCHYVTREAARNHEALLC 245 Query: 234 VAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI 291 V +S R + D Y LK+ EM +++ S +P A ++T+ I R V P Sbjct: 246 VQTGKTLSDPTRFKFDGDGYFLKSAEEMRALWDSQVPGACDSTLLIGERVQSYADVWEPR 305 Query: 292 --LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P F E D + + L ++ AGLE R G + ++Y R ++E+ VI Sbjct: 306 DRMPVFPVPEGHD----QASWLTHEVKAGLERRFRGGPVP-----EEYTTRAEYEIKVIC 356 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 F YFLIVAD I +A+ I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLN Sbjct: 357 DKGFPSYFLIVADLINYARSVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLN 416 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA--LQM 467 P+R S PD DIDF RR E++RY N++G ERVAQ+ITFG+++ KAAL+D R Q Sbjct: 417 PERPSAPDIDIDFDDRRRGEMLRYAANRWGSERVAQVITFGTIKTKAALKDSARVNFGQP 476 Query: 468 PYSQVDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQKL 518 ++ DR+ K +P A + L I D + R++EA DP V + E ++ L Sbjct: 477 GFAIADRITKALPPPIMAKDIPLSGITDPNHERYKEAAEVRGLIDTDPDVRTIYETARGL 536 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R+A HA +++ PL +P+++ + +T ++ E GL+K DFLGL+ Sbjct: 537 EGLVRNAGVHACAVIMSSEPLIDAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRN 596 Query: 579 LTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ ++ + A RG+ +DL +P DD Y LL+ TLG+FQL+ MR L MQP Sbjct: 597 LTIIGDAIANIKANRGIDLDLETLPLDDPAAYELLSRGDTLGVFQLDGGPMRDLLRRMQP 656 Query: 638 DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691 DI+A+++LYRPGP+ Y +RKNG++ I IHP ++ LK ET G+I+Y Sbjct: 657 TGFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVY 716 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQ+M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ Sbjct: 717 QEQIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWD 776 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ Sbjct: 777 TILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRR 836 Query: 812 FNIQIMPPSVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869 I ++PP VN +F VGD+ I + L AI+ VG +++ +K F D+ Sbjct: 837 LGITVLPPDVNESEHNFASVGDD-IRFGLGAIRNVGANVVSSLIKTRTEKGKFTDFSDYL 895 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +++D N++V ESL+ AGA D G+ R L + +K ++F Sbjct: 896 NKIDITACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG 955 Query: 930 EKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLD 969 + T +D + F+++ +E+ E+ +LG Y SGHPL+ Sbjct: 956 GEDTGTDAV----FTIKVPDEEWEDKHKLALEREMLGLYVSGHPLN 997 >gi|139438972|ref|ZP_01772432.1| Hypothetical protein COLAER_01438 [Collinsella aerofaciens ATCC 25986] gi|133775683|gb|EBA39503.1| Hypothetical protein COLAER_01438 [Collinsella aerofaciens ATCC 25986] Length = 1267 Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust. Identities = 345/1027 (33%), Positives = 531/1027 (51%), Gaps = 74/1027 (7%) Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG- 125 I+PI GC++ + L ++ P + ++LL EGY L++ VS + QG Sbjct: 119 IKPIFGCEVYFTPDETLARDHK-----PELYHMILLAKDQEGYVNLMQTVSEAAV--QGF 171 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLY 183 R+ L L+ +G+I + +G I + + A K TF+ F GD Y Sbjct: 172 YYKPRVTLDNLRR-HAKGMICTSACIAGIIPKYIDRGDMEGAIKWAETFRDTFDPGD-FY 229 Query: 184 VNLQRH-----RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 + +Q H G D + ++ +A + ++ATN+ +L ED DV+M + + Sbjct: 230 IEIQEHGITTDNGLTDEQMDRTLIDIAKQVGVKVIATNDFHYLRREDAPVQDVIMCIGMN 289 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V +R R+T + Y+K EM ++F PEA +NT+EIA +C L + ILPRF Sbjct: 290 AKVDDPNRMRMTGSEFYMKTEEEMRAMFPYCPEACDNTLEIADKCYVELDWDSIILPRF- 348 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 D + E++ R + GL + + ++R ++E VI F+ Y Sbjct: 349 --PLLDPGETHESQFRRECEKGLRQHYGDDWATREIGGVNIKERFEYEYKVICDKGFAAY 406 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVA+++QWAK N I VGPGRGS AG++ AYA+ IT DPL L+FERFL+P R MP Sbjct: 407 FLIVAEYVQWAKDNGIGVGPGRGSAAGAIVAYAMNITAFDPLENGLMFERFLSPQRTEMP 466 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF +RR EV+ +V+ YG E+V +IT+ +++AK A+ D R L P RL Sbjct: 467 DIDMDFDDERRLEVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLS 526 Query: 477 KLIPNDPAHPVSLQAIAD---------DSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 K++ +DP V L+ + D + F EA D R+++ + +EGL R Sbjct: 527 KMVSSDPK--VKLKQVLDKQPGKEDLFNPDFAEAYKKDDDARRIIDTALSIEGLTRGEGV 584 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HA ++I P+++ VP D + + +TQ+ + GL+K DFLGL+TLT++ K+ Sbjct: 585 HACAVLICRDPVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKA 644 Query: 588 FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + + G+ + IPFDD E + L+ + T G+FQ+ES+GM ++ M+P + ++AL Sbjct: 645 NIKKNFGIDIKEEEIPFDDPEIFKLMGSGHTAGVFQVESAGMTATIKNMKPTEYKHVVAL 704 Query: 647 VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++LYRPGP+ +V Y NR NGKE VS +D +L ET G ++YQEQVM I+ + G Sbjct: 705 IALYRPGPLGAGMVSSYINRMNGKEPAVSYDDRLDDILGETYGTMVYQEQVMLISVEMCG 764 Query: 705 YSLSEADV-LRRAMGKK--------IKEEMDKQKE----RFISGASKNGISKTIAVNIFE 751 +S E+D +R+ + KK + D E +++GA KN ++ +A I++ Sbjct: 765 FSKGESDSRIRKPVAKKKIKLLTSTVLHWEDGSDETTYDHWMNGAIKNNYTREVAQKIWD 824 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + +FA Y FNKSH+A YA++ QTAW+K HYP E++AA +T +KI + R Sbjct: 825 DVLEFASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSYTGKTDKIVHYVSACRH 884 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCS 870 I ++ P VN +F + + LA I+GVGT A+ I+ E A PF +L DF Sbjct: 885 DGIPVLSPDVNESGTEFTATKEGVRFGLAGIRGVGTGVAQAIIAEREAGGPFKTLHDFVE 944 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHEN 925 RVDS + NRRV+ESL+ AGA D GY R Q++ +D NI A +K+R + + Sbjct: 945 RVDSSQANRRVIESLIKAGAFDSTGYPRRQMMHFVDKNNPENIIDAAVKRQKDRASGQTS 1004 Query: 926 IFAH----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-- 979 F E F + + ++ E+ VLG Y S HPL ++ L K Sbjct: 1005 FFDMFGDVEGSGFEVSVPDPDGQEWDRHLKLSQEKEVLGIYVSDHPLRPFEYALAKARDF 1064 Query: 980 -----IKGYE---ESVATI-----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 GYE + TI G + A MV S ++ T+ G +G V + E Sbjct: 1065 SFSQIDTGYEVQNPTGGTINQEIPEGKALWWAGMVSSVSKRVTKNGDPMGIVQLEDMEGE 1124 Query: 1027 YEANFFP 1033 FP Sbjct: 1125 ATVVVFP 1131 Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +FVHL H+ +S+L+GA + +++++ PA+AITD ++ + + AC A Sbjct: 2 AFVHLHNHTVFSMLDGATRIQDMVNRAVELSMPAVAITDHGYMYGVPDLAL-ACDA 56 >gi|186684965|ref|YP_001868161.1| DNA polymerase III subunit alpha [Nostoc punctiforme PCC 73102] gi|186467417|gb|ACC83218.1| DNA polymerase III, alpha subunit [Nostoc punctiforme PCC 73102] Length = 876 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 324/824 (39%), Positives = 479/824 (58%), Gaps = 88/824 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D+ A AIA+TD ++ A+E + + I+P Sbjct: 2 SFVPLHIHSDYSLLDGASQLPELVDQAIALGMKAIALTDHGVMYGAVELIKICRSQNIKP 61 Query: 70 IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 IIG ++ DI+ Q+ +Q V+L +GY+ L++L + +L Q Sbjct: 62 IIGNEMYVINGDIEKQERRPKYHQ-----------VVLAKNTKGYKNLVKLTTISHL--Q 108 Query: 125 GKQS----VRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 G Q R C++ L + EGLI+ + G + +A N A K +K +FG Sbjct: 109 GVQGKGIFSRPCINKDLLKQYHEGLIVTSACLGGEVPQAILSNRPDAARKVAQWYKDVFG 168 Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ +Q H DR ++V++A + ++ATN+S F+S D EAHD L+ + Sbjct: 169 DDYYLEIQDHGSQEDRIVNVEIVKIARELGIKIIATNDSHFISCFDVEAHDALLCIQTGK 228 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCS--FIL---QV 287 ++ + R R + YLK+ EM +F D LP EA+ T E+A + I+ Q+ Sbjct: 229 LIIEDKRMRYSGTEYLKSGEEMRQLFRDHLPDDVISEAVATTEEVADKVEPYHIMGEPQI 288 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFEL 345 P +P D E + A GL RL + K D Y++RL++EL Sbjct: 289 PTPPIP---SGHTADTYAE------DVAWNGLLERLNR----KSRQEVDSVYKERLEYEL 335 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +I +M FS YFL+V D+I++A+ NNIPVGPGRGS AGS+ AYA+ IT+IDP+ LLFE Sbjct: 336 KMIQQMGFSKYFLVVWDYIKFARDNNIPVGPGRGSAAGSLVAYAMRITNIDPVHHGLLFE 395 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R SMPD D DFC ++RD+VI YV KYG +RVAQIITF L +KA L+DV R L Sbjct: 396 RFLNPERKSMPDIDTDFCIEQRDKVIEYVTEKYGADRVAQIITFNRLTSKAVLKDVARVL 455 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGL 521 +PY + D++ KLIP P L+ + D F+E +P V L+++ ++EG Sbjct: 456 NIPYGEADKMAKLIPVVRGKPTKLKVMVSDKTPEPEFKEKYDKEPHVRHWLDMAMRIEGT 515 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 + HAAG+VI D PL ++VP+ ++ + +TQ+ M+ +E GL+K DFLGL+ LTL Sbjct: 516 NKTFGVHAAGVVISDEPLDEIVPLQKNNDGSV-ITQYFMEDLESMGLLKMDFLGLRNLTL 574 Query: 582 LQKSLDFLAQ-RGVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIF 621 +QK++D + + RG +VD S +P D +TY LL GIF Sbjct: 575 IQKTVDLIQETRGYRVDPDEIPRQERKAQKILAKGEHSSLPKDVQKTYELLEAGELEGIF 634 Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID 679 QLESSGMRQ + ++P IEDI ++++LYRPGP+D ++ + NRK+G+E I H +++ Sbjct: 635 QLESSGMRQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGRENIDYQHTVLE 694 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 P+L ET G+++YQEQ+M+IAQ ++GYSL +AD+LRRAMGKK EM KQ+E+F+ GA+KN Sbjct: 695 PILDETYGIMVYQEQIMKIAQDMAGYSLGQADLLRRAMGKKKVSEMQKQREKFVDGAAKN 754 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 G+ K +A +FE + KFA+Y +SY+T + Y Sbjct: 755 GVPKKVADELFEQMLKFAEY-----------CLSYETEILTVEY 787 >gi|17231070|ref|NP_487618.1| DNA polymerase III subunit alpha [Nostoc sp. PCC 7120] gi|17132711|dbj|BAB75277.1| DNA polymerase III alpha subunit [Nostoc sp. PCC 7120] Length = 877 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 314/815 (38%), Positives = 478/815 (58%), Gaps = 69/815 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D+ A AIA+TD ++ A+E + + I+P Sbjct: 2 SFVPLHIHSDYSLLDGASQLPELIDQAIALGMKAIAVTDHGVMYGAIELLKICRSKNIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS- 128 IIG ++ I + +L+ +G+ + V +L +GY+ L++L + +L QG Q Sbjct: 62 IIGNEMYI-LNGDLEKQERGRPKYHQV----VLAKNTKGYKNLVKLTTISHL--QGVQGK 114 Query: 129 ---VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 R C++ L+E EGLI+ + G I +A N A K +K +FGD Y Sbjct: 115 GIFSRPCINKDLLKEY-HEGLIVTSACLGGEIPQAILSNRPDAARKVAKWYKDVFGDDFY 173 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR +++++A E+ VATN+S ++S D EAHD L+ + ++S+ Sbjct: 174 LEIQDHGSQEDRIVNVEIIKIARELEIKFVATNDSHYISCFDVEAHDALLCIQTGKLISE 233 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 R R + YLK+ EM +F D + EA+ T E+A + + P +P + Sbjct: 234 DKRMRYSGTEYLKSGEEMKLLFRDHLTDDVIAEAIATTEEVADKVEPYHIMGEPRIPNYP 293 Query: 297 --EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 D EE A GL +L + + + YR+RL++EL ++ +M FS Sbjct: 294 IPSGHTPDTYVEE------VAWQGLLEKLNRKS--RNEVEPVYRERLEYELKMLQQMGFS 345 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFL+V D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+ LLFERFLNP+R S Sbjct: 346 SYFLVVWDYIKFARDNNIPVGPGRGSAAGSLVAYTMGITNIDPVHHGLLFERFLNPERKS 405 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD D DFC ++RD+VI YV +KYG ERVAQIITF L +KA L+DV R L +PY + D+ Sbjct: 406 MPDIDTDFCIEQRDKVIEYVTDKYGKERVAQIITFNRLTSKAVLKDVARVLNIPYGESDK 465 Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 + KLIP P L+ + D+ F+E DP V L+++ ++EG + HAA Sbjct: 466 MAKLIPVVRGKPTKLKVMISDATPEPEFKEKYDNDPRVRHWLDMAMRIEGTNKTFGVHAA 525 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI PL ++VP+ ++ + +TQ+ M+ +E GL+K DFLGLK LT++QK++D + Sbjct: 526 GVVISADPLDEIVPLQKNNDGSV-ITQYFMEDLESMGLLKMDFLGLKNLTMIQKTIDLIE 584 Query: 591 QR-GVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 ++ G ++D +P D +TY LL + GIFQLESSGM+Q Sbjct: 585 EKHGFRIDPYEITSQERKAQKILAKGEYKTLPKDVQKTYELLESGELEGIFQLESSGMKQ 644 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688 + ++P IEDI ++++LYRPGP+D ++ + NRK+G+E I L++P+L ET G+ Sbjct: 645 IVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGRENIDYESQLLEPILNETYGI 704 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 ++YQEQ+M+IAQ ++GY+L +AD+LRRAMGKK EM KQ+E+FI G++KNG+ K +A Sbjct: 705 MVYQEQIMKIAQDMAGYTLGQADLLRRAMGKKKVSEMQKQQEKFIDGSTKNGVKKQVAEK 764 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +F+ + KFA+Y +SY T + Y Sbjct: 765 LFDDMLKFAEY-----------CLSYDTEVLTVEY 788 >gi|296164423|ref|ZP_06846997.1| DNA-directed DNA polymerase III alpha subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900205|gb|EFG79637.1| DNA-directed DNA polymerase III alpha subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1181 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 355/1077 (32%), Positives = 565/1077 (52%), Gaps = 66/1077 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S SFVHL H+ YS+L+GA + +L ++ PA+ +TD N+F A EF A Sbjct: 1 MNQSSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATK 60 Query: 65 AGIQPIIGCQLDIDMQDN-----LKMTNQGK-----TPFPTVPSIVLLVSTAEGYQRLIE 114 AGI+PIIG + I ++ + G+ + + + ++ A G + L + Sbjct: 61 AGIKPIIGVEAYIAPGSRFDTRRIQWGDPGQKSDDVSGSGSYTHLTMVAENATGLRNLFK 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + + A + + Sbjct: 121 LSSLASFEGQLGKWSRMDAELIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKW 179 Query: 175 KKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 +++FG D ++ L H G R RE ++++ +P +ATN+ +++ + H+ Sbjct: 180 REIFGADNYFLELMDH-GLSIEQRVREG-LLEIGRKLGIPPLATNDCHYVTRDAAHNHEA 237 Query: 231 LMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVH 288 L+ V +S +R + D +YLK+ +EM ++ D +P A ++T+ IA R V Sbjct: 238 LLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRRLWDDQIPGACDSTLLIAERVQPYDDVW 297 Query: 289 A--PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 A +P F E D + + L ++ +AGL R G QDY R ++E+ Sbjct: 298 AQRDRMPIFPVPEGHD----QASWLHHEVMAGLRRRFPSGV------GQDYIDRAEYEIK 347 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI F YFLIVAD I +A+ +I VGPGRGS AGS+ AYAL IT+IDP+ LLFER Sbjct: 348 VICDKGFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFER 407 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL- 465 FLNP+R S PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAAL+D R Sbjct: 408 FLNPERPSAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHY 467 Query: 466 -QMPYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVDRLLEIS 515 Q ++ DR+ K +P A + L I D R++EA DP V + + + Sbjct: 468 GQPGFAIADRITKALPPPIMAKDIPLSGITDPEHERYKEAAEVRGLIETDPDVRTIYQTA 527 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + LEGL R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLG Sbjct: 528 RGLEGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLG 587 Query: 576 LKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L+ LT++ +L+ + A RGV +DL +P DD TY LL TLG+FQL+ MR L Sbjct: 588 LRNLTIIGDALENIKANRGVDLDLESVPLDDEPTYELLGRGDTLGVFQLDGGPMRDLLRR 647 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGV 688 MQP DI+A+++LYRPGP+ Y +RKN ++ I IHP L +P+ L ET G+ Sbjct: 648 MQPTEFNDIVAVLALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILSETYGL 707 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQ+M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ Sbjct: 708 IVYQEQIMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFQEGMTANGFSEKAVKA 767 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 +++ + FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D Sbjct: 768 LWDTILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLAD 827 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867 R+ I ++PP VN V+F I + L A++ VG +++ +K F D Sbjct: 828 CRKLGITVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSD 887 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 + +++D N++V ESL+ AGA D ++R L + +K ++F Sbjct: 888 YLNKIDISACNKKVTESLIKAGAFDSLSHARKGLFLVHTDAVDSVLGTKKAEAIGQFDLF 947 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMGIK 981 G T F+++ +E+ E+ +LG Y SGHPL+ +L + Sbjct: 948 GGSDGEAG--CTDSVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLNGVAHLL---AAQ 1002 Query: 982 GYEESVATIRGN-----NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + A + G+ +R+ ++ S ++ + G + E FFP Sbjct: 1003 TDTQIPAILDGDVPNESQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1059 >gi|184155343|ref|YP_001843683.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus fermentum IFO 3956] gi|183226687|dbj|BAG27203.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus fermentum IFO 3956] Length = 1099 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 360/1044 (34%), Positives = 535/1044 (51%), Gaps = 95/1044 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FV L V S YSLLE + ++ A+ + D L+ A+ F ++A AG+ P Sbjct: 2 GFVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG L + + + LL A GYQ L L +R + D+ Q + Sbjct: 62 VIGVSLPLTFAEG-------------TLDVTLLAKGAVGYQNLTRLSTRA-MTDRANQPL 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 I L+E G++ L+++ + S+ T+ +L D L +NL Sbjct: 108 TI--EDLRE-GSDDLVVIVA------PQLMLLGVSEQ------TYAQLGEVADYLGINLD 152 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRP 246 + + +A LPL+A +L+E+DY A VL A+ A T+ Sbjct: 153 ----FTAAERQDLQAVAERCGLPLIAFEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKAS 208 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALE--NTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + T H+L+ E+ + + A TV +A RC P+LP F + Sbjct: 209 QRTGRHWLRPAEEVAAAYRAAGLAEAAAQTVAVAERCQVHFADQTPVLPAFPTPAGQGV- 267 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR GL R G A +Y+ RL+ EL VI +M F YFLIV D + Sbjct: 268 ---ADYLRELCQRGLAKRKLAGDPA------EYQARLEHELTVIHQMGFDNYFLIVWDLM 318 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A ++ I GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNP+R MPD D+D Sbjct: 319 NFAHQHQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPD 378 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI----- 479 +RR+EV+ Y+ + YGHERVAQIITFGSL K LRDV R +P QVD L ++I Sbjct: 379 NRREEVLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVDSLSQVIDRVKG 438 Query: 480 PN-------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 P+ + A PV Q +A DS+ V LLE++ KLEGL RH S HAAG+ Sbjct: 439 PHQTLADLLESAQPV--QNLARDSKL---------VACLLEVAAKLEGLPRHDSIHAAGV 487 Query: 533 VIGDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 V+ PL + VP+ + + VTQF +E GL+K D LGL+ LT ++ +L+ + Q Sbjct: 488 VLAAEPLIKTVPLQAGNEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQ 547 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 DL+ I +D T L T GIFQ ESSG+RQ L + PD E+I+A+ +LYR Sbjct: 548 HQPDFDLTHIALNDRPTLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYR 607 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI + RK G+E + + P+L T G+++YQEQVMQ+A ++ G+SL EAD Sbjct: 608 PGPMDNINHFIARKKGQEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEAD 667 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAM KK M KE F++GA+K G +A +F + +FA+YGFN+SHA AY+ Sbjct: 668 LLRRAMSKKKLATMASMKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRSHAVAYSK 727 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++++ A++K H+P EFLAA M D K+ + +A+Q I P++N + Sbjct: 728 MAFEMAYLKVHFPAEFLAALMETNPDT-SKVWAYFSEAKQLGITTHGPAINQSQERVSLV 786 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 D ++ L IKG+ R I+E + P+ L D +R+D+K + L+ AGA Sbjct: 787 DQELWLGLDMIKGLRRDFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEDLFVPLIDAGA 846 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 LD GY+R ++ + L I + A++ G + ++ +V Sbjct: 847 LDHLGYNRAEMAEGLKAILEGAEYA--------------GLGLGMAPVVAQRNEYP-LAV 891 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKT 1009 R E VLG Y SGHP+ Y+ + K+ + +VA +R +RL MV ++ T Sbjct: 892 RLAREHAVLGTYLSGHPVSQYQDLRTKLKLP----TVAQLRPKQRVRLVLMVTRMRKVTT 947 Query: 1010 RKGSR-IGWVTFSEPAKEYEANFF 1032 ++ + + ++T S+ E F Sbjct: 948 KREHKPMAFLTASDETGAVEVTIF 971 >gi|134102263|ref|YP_001107924.1| DNA polymerase III subunit alpha [Saccharopolyspora erythraea NRRL 2338] gi|291003774|ref|ZP_06561747.1| DNA polymerase III subunit alpha [Saccharopolyspora erythraea NRRL 2338] gi|133914886|emb|CAM04999.1| DNA polymerase III alpha subunit [Saccharopolyspora erythraea NRRL 2338] Length = 1194 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 362/1075 (33%), Positives = 560/1075 (52%), Gaps = 66/1075 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA + + + + PA+ +TD N+F A EF Q+A GI+PI Sbjct: 6 FVHLHVHTEYSMLDGAAKVGALFAEAQRLEMPAVGMTDHGNMFGADEFYQQAKKTGIKPI 65 Query: 71 IGCQLDIDMQDNL--------KMTNQGKTPFP---------TVPSIVLLVSTAEGYQRLI 113 IG + + + +G + + +L A G + L Sbjct: 66 IGIEAYLAPGSRFHKKPVFWGEAKQRGTDEYGEGGDVSGAGAYTHMTMLARNATGLRNLF 125 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L SR + Q ++ R+ + E EG+I TG SG + A + Sbjct: 126 TLSSRASMEGQYRKP-RMDRELVAEY-AEGIIATTGCPSGEVQTRLRLRQFDEAMQAASD 183 Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 +K +FG + ++ L H +R ++++A L VATN+S +++ + E+H L Sbjct: 184 YKDIFGAENFFLELMDHGLPIERSVREGLLKIAKELGLKPVATNDSHYVTADQAESHGAL 243 Query: 232 MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHA 289 + V ++ + R + D +YLK+ +EM + ++P A +NT+ IA R V + Sbjct: 244 LCVQSGKTLNDESRFKFDGDGYYLKSAAEMREYWDKEVPGAADNTLLIAERVESYEDVWS 303 Query: 290 --PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 +PR D K E L + L R +GA Q+ R+ EL+V Sbjct: 304 FQDRMPRV----TDGSGKTERQLLEAEVEQYLPTRYPEGA------TQECLDRIKVELDV 353 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 + + YFL+V D +WAK I VGPGRGS AGS+ AY L IT++DPL L+FERF Sbjct: 354 LDTKGYCAYFLVVGDLTRWAKSQGIHVGPGRGSAAGSLLAYILHITNLDPLEHGLIFERF 413 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-- 465 LNP+R S PD D+DF RRDEV++Y +KYG ++VAQ+ITFG ++ KAA++D R Sbjct: 414 LNPERDSPPDIDLDFDDRRRDEVLQYAIDKYGRDKVAQVITFGKIKTKAAIKDSARVHHG 473 Query: 466 QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLEISQ 516 Q ++ D++ K +P A + L I D R A A DPSV ++ + ++ Sbjct: 474 QPGFAIADKISKALPPPIAAKDIPLSGIVDPQHERYAEAAEVRNLIETDPSVSQIFDTAR 533 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 LEGL R+A HA +++ +PL VP++ RD S +T ++ E GL+K DFLG Sbjct: 534 GLEGLIRNAGVHACAVILSSQPLMGTVPLWARDDGS--IITGWDYPSCEAIGLLKMDFLG 591 Query: 576 LKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L LT+L +L + A ++DLS + DD +TY LL +LG+FQLE GMR+ L+ Sbjct: 592 LSNLTILGDALKMVKANHDREIDLSNLGLDDAKTYELLARGESLGVFQLEGGGMRELLKR 651 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQGV 688 MQP DI+A +LYRPGP++ Y +RKNGK+ + IHP +D LK ET G+ Sbjct: 652 MQPTEFADIVACNALYRPGPMEVNAHNDYADRKNGKKPVEPIHPDLDEPLKDILSETYGL 711 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQ+M IAQ ++GYSL AD+LRRAMGKK KE +D++ E F +G + G Sbjct: 712 IVYQEQIMAIAQKVAGYSLGRADILRRAMGKKKKEVLDQEFEGFQAGMREQGFRDEAIDK 771 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++ + FA Y FNKSHAA YA+++Y TA++K +YP E++AA +T DN +K+ + + Sbjct: 772 LWATVLPFAGYAFNKSHAAGYALVAYWTAYLKANYPAEYMAALLTSNGDNKDKMAVYLAE 831 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLED 867 R+ ++++ P VN DF + I + L+A++ VG+ I + DK + S D Sbjct: 832 CRRMGVKVLSPDVNDSLNDFTAVGSDIRFGLSAVRNVGSNVVASIAKVREDKGRYSSFTD 891 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F + ++ N+RV+ESL+ AGA D G++RM L Q + +++ + ++F Sbjct: 892 FLDKSETVACNKRVIESLIKAGAFDSLGHTRMSLAQHHEAAVDAVIGLKRQQALGQFDLF 951 Query: 928 AHEKGTF----SDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 S + +F+ + + E+ +LG Y S HPLD + +L Sbjct: 952 GGGDDAGGEESSSPLAHLQFTPDEWPRKQMLSYEREMLGLYVSAHPLDGAERLLAPYQDT 1011 Query: 982 GYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G E V R + +++A M+ Q++ + G VT + E FFP Sbjct: 1012 GIAELVGGEREAGKDQVKIAGMISGIQRRINKNGHPWAIVTLEDLDASVEVLFFP 1066 >gi|314967462|gb|EFT11561.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA1] Length = 1190 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 333/1014 (32%), Positives = 532/1014 (52%), Gaps = 76/1014 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 6 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 I+PIIG + D D + ++ G+ + + Sbjct: 66 PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 +EG L L S + + R+ + + + G+I TG SG + Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276 +E+ +AHD L+ V V KD P +Y+K+ +M ++F D PEA +NT+ Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295 Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 + +V + +P+F E + +E+ LR K GL+ + Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++ +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 I+PL LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++A Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505 KAA++D R L P++ D++ K +P D V L I D S FR+ + Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P V +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ L ++ + + A RG+ VDL I DD TY +L TLG+FQL+ Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678 + MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 D +L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G + Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 +G S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K+ + D R +I ++PP VN ++F I + L AI+ VG I+ A Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + P F +V N+R++ESL+ AGA D G+SR L+ + +++ Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYEQAVDAVIDIKR 945 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N+ N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999 >gi|298244334|ref|ZP_06968140.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963] gi|297551815|gb|EFH85680.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963] Length = 1170 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 339/1059 (32%), Positives = 562/1059 (53%), Gaps = 66/1059 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G + ++ + A +AITD ++ A+EF + GI P+ Sbjct: 5 FAHLHVHTEYSLLDGLSRIPTLIKQAKALGMEHLAITDHGAMYGAMEFYLECQKQGIHPV 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ + D++ + + +VLL T GY+ L++L + + R Sbjct: 65 IG--MEAYLVDDVNYKPKKSNAYW---HLVLLAHTQAGYENLMKLTTLGFTQGLYYGKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFG-DRLYVNLQR 188 I L+ EGLI + G I + +R + ++ +FG + Y+ Q+ Sbjct: 120 IDKKMLKN-HAEGLIATSSCLGGEIPELLVERQDMDSARRAVRWYQDVFGPENFYLEFQQ 178 Query: 189 HRGYDRYRE---SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H G ++ + + Q+ + +P + TN+ +++++ AHD+ + + DR Sbjct: 179 HYGKGSPQDACNTGLYQIYQSMHVPAILTNDLHYVNKDQANAHDLFLCIQMGNRYDDPDR 238 Query: 246 PRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R D Y LK+ EM ++ D+P+ L NTV +A RC LP F DI Sbjct: 239 FRFDSDEYFLKSPQEMALLYPDIPDVLRNTVLLAERCQIDPTAKKAGLPTF------DIP 292 Query: 305 K---EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ L + + G R + + + ++++D+E ++I + F+ YFLI Sbjct: 293 AGFPSPDDYLYDLCLKGARWRFGEVSTS-------VQEQIDYEFSIIKQKGFASYFLIQQ 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D +A+ + I RGS AGS+ AY L IT++DPLR+ LLFERF+NP+R MPD D+D Sbjct: 346 DVTNYARDHGITC-LARGSAAGSLIAYCLGITNVDPLRYGLLFERFMNPERNDMPDIDMD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 + RR+EVI Y +YG E+ AQ++TF +L AK +++DV RAL +R+ +LIP Sbjct: 405 YPDSRREEVINYTMQRYGLEKTAQMVTFNTLAAKGSVKDVARALGKT-DLGERITRLIPT 463 Query: 482 DPAHPVSLQAIADD-SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P V+LQ+ DD + R + V +++ +++LEGL R HAAG+++ RPL+ Sbjct: 464 GPK--VTLQSSLDDVAELRMLYTQNGEVSEIIDFARQLEGLNRSTGVHAAGVLLSARPLN 521 Query: 541 QLVPMYRDVRSDLPVTQ----FNMKWIE-KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594 ++VP+ R D P T + KW+E GLIK+DFLGL L++L+++L+F+A+ +G Sbjct: 522 EIVPLSRKDPKD-PTTPLVCGYEHKWLEDNLGLIKYDFLGLANLSVLREALNFVARTQGE 580 Query: 595 KVDLSLIPFDD----------HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 ++ L IP D + + +L+ + +FQLES+ MR+ L+ ++P CIEDI+ Sbjct: 581 ELLLEHIPVDPTPDPVLRERREKAFAMLSRGDAIAVFQLESAKMREYLKQLKPTCIEDIM 640 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 A+V+LYRPGP+D+I + K+G++KI + P + L E+ GVI+YQ+QV+QIA L+G Sbjct: 641 AMVALYRPGPMDSIPEFVACKHGRKKIEYLDPRLSEWLAESYGVIVYQDQVLQIANNLAG 700 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 +S + + R+A+ KK EE++ K FI G NG+ A +FEL+ F YGFNK+ Sbjct: 701 FSWGKVNKFRKALSKKKMEEVEGYKGDFIQGCVNNGMKAAAAEKLFELVLPFGGYGFNKA 760 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 HAA+Y V++Y TA++K +YP E++AA++T + + +++ F +A + ++++ P +N Sbjct: 761 HAASYGVVAYYTAYLKANYPAEYMAAALTADAGDSKQVAVFIAEAHKMGVKVLGPDINKS 820 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLE 883 + F V + I + L AIKG+G I+ A D PF SL DFC RV + + V+E Sbjct: 821 ELGFSVEEGNIRFGLLAIKGIGEGPITEILRARTDNGPFTSLVDFCVRVG---VGKGVIE 877 Query: 884 SLVFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 +L+ AGALD R QLL S++ Y + + R + +F+ K S + L Sbjct: 878 NLIKAGALDSLEGEGKRHQLLASVETAITYGK---RERQAREREVFSLFKDLASAPVPLV 934 Query: 942 KFSVENSSVR----FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---ATIRGNN 994 VE + + + E+ ++G Y S HPL + E + A + Sbjct: 935 FSLVEAAEISRKQLLDWEKELIGIYISPHPLTYLAHLFDGRVTHSTTELLEKGAEVGKGT 994 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I L ++ + + T+KG + T + FP Sbjct: 995 ITLGGVITNIRAFSTKKGDMMCSFTLEDAQGGMVVTVFP 1033 >gi|327183463|gb|AEA31910.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1118] Length = 1035 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 340/1031 (32%), Positives = 538/1031 (52%), Gaps = 58/1031 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ + +++ A+ + D N + + F + A GI+P++G Sbjct: 6 LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-C 132 Q+ ++ G +++ T GY L+ L S + LL + Q+ +I Sbjct: 66 QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + F N Q+ L KK+ D Y+ + Sbjct: 116 LKELTKYLEDLLVIIPANTRSELVYLFETNQ-QLGSDYLRDLKKIVSD-FYLGVYAAEND 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251 Y + V L+ +LPLVA +S +L D L A+ S Q P D Sbjct: 174 QDYLDY-VRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAI-RSGQKMQDMVPLAKQDG 231 Query: 252 -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HY+ + +M+ + DL +A+ NT +IA +C+ + P+LP++ + + E Sbjct: 232 SHYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKF----LTSE 287 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L A GL+ R Q I +Y++RL++EL +I +M F YFLIV D I + Sbjct: 288 EYLHYLAQTGLQARFGQEKIPA-----EYQKRLNYELRIINQMGFDDYFLIVWDVINYCH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS GS+ +Y+L IT++DPL++ LLFERFLNP R MPD D+D RD Sbjct: 343 RVKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRD 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + ++V++ + IP Sbjct: 403 TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMAEVNKWARAIPFSKGKMTL 462 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 QA + R A L + LEGL RH S HAAG+VI D ++ + + Sbjct: 463 KQAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQAG 522 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 +PVTQ K++E GL+K DFLGL+ LT+L LD + +GVK+D + IP +D +T Sbjct: 523 PLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKT 581 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 L T IFQ ES G+R+ L + PD ED++A+ +LYRPGP+ NI + RKNGK Sbjct: 582 LELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGK 641 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++ Sbjct: 642 EPVRYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQE 701 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 K +FI+G KNG SK + ++ + +FA+YGFN+SHA AY I++ A++K HYP F Sbjct: 702 KSKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFY 761 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 A L K +++ A++ NI+++ P +N +++ + +N I L AIKG+ Sbjct: 762 TA--MLNSSTSAKAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVD 819 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 A+ I A+ KP+ SL DF R+DSK L +E+L+ AGA D +R +LL + +I Sbjct: 820 FAKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDI 877 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 Q +NI E D L+ + + + E E++VLGF + PL Sbjct: 878 IANVQLT-------GQNISLSE--ILGDA-PLKPAEIPTNGEKAEMEEKVLGFATTTTPL 927 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRL------AAMVVSKQQKKTRKGSRIGWVTFSE 1022 + ++ Y + + N + ++S ++ +T+ + + F++ Sbjct: 928 ---------VAVQKYAQKFNALPLNQFQFNESGIGVGKLMSLKRIRTKNDKTMAFAGFAD 978 Query: 1023 PAKEYEANFFP 1033 + + E FP Sbjct: 979 SSSQQEVIIFP 989 >gi|313820452|gb|EFS58166.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA1] gi|313822742|gb|EFS60456.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA2] Length = 1190 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 333/1014 (32%), Positives = 531/1014 (52%), Gaps = 76/1014 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 6 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 I+PIIG + D D + ++ G+ + + Sbjct: 66 PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 +EG L L S + + R+ + + + G+I TG SG + Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276 +E+ +AHD L+ V V KD P +Y+K+ +M ++F D PEA +NT+ Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295 Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 + +V + +P+F E + +E+ LR K GL+ + Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++ +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 I+PL LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++A Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505 KAA++D R L P++ D++ K +P D V L I D S FR+ + Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P V +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ L ++ + + A RG+ VDL I DD TY +L TLG+FQL+ Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKSIALDDKTTYEMLARGDTLGVFQLD 645 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678 + MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 D +L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G + Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 +G S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K+ + D R +I ++PP VN ++F I + L AI+ VG I+ A Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + P F +V N+R++ESL+ AGA D G+SR L+ +++ Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N+ N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999 >gi|289428306|ref|ZP_06429993.1| DNA polymerase III, alpha subunit [Propionibacterium acnes J165] gi|289158455|gb|EFD06671.1| DNA polymerase III, alpha subunit [Propionibacterium acnes J165] gi|313807645|gb|EFS46132.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA2] gi|313818682|gb|EFS56396.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL046PA2] gi|313825324|gb|EFS63038.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL063PA1] gi|314925061|gb|EFS88892.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA3] gi|314960402|gb|EFT04504.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA2] gi|314978578|gb|EFT22672.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL072PA2] gi|314987996|gb|EFT32087.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA2] gi|314989806|gb|EFT33897.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA3] gi|315084184|gb|EFT56160.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL027PA2] gi|315085527|gb|EFT57503.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA3] gi|315088416|gb|EFT60392.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL072PA1] gi|327331815|gb|EGE73552.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL096PA3] gi|327443592|gb|EGE90246.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL013PA2] gi|328753347|gb|EGF66963.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL020PA1] Length = 1190 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 333/1014 (32%), Positives = 531/1014 (52%), Gaps = 76/1014 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 6 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 I+PIIG + D D + ++ G+ + + Sbjct: 66 PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 +EG L L S + + R+ + + + G+I TG SG + Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276 +E+ +AHD L+ V V KD P +Y+K+ +M ++F D PEA +NT+ Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295 Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 + +V + +P+F E + +E+ LR K GL+ + Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++ +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 I+PL LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++A Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505 KAA++D R L P++ D++ K +P D V L I D S FR+ + Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P V +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ L ++ + + A RG+ VDL I DD TY +L TLG+FQL+ Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKSIALDDKTTYEMLARGDTLGVFQLD 645 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678 + MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 D +L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G + Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 +G S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K+ + D R +I ++PP VN ++F I + L AI+ VG I+ A Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + P F +V N+R++ESL+ AGA D G+SR L+ +++ Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N+ N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999 >gi|239637978|ref|ZP_04678939.1| DNA polymerase III subunit alpha [Staphylococcus warneri L37603] gi|239596541|gb|EEQ79077.1| DNA polymerase III subunit alpha [Staphylococcus warneri L37603] Length = 1064 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 338/1028 (32%), Positives = 549/1028 (53%), Gaps = 91/1028 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H+SY LL +L ++++++K + +AITDTN L+ +F AGI P+ G Sbjct: 4 YLNIHTSYDLLNSSLRISDVVNKAKNEGIETLAITDTNVLYGYPKFYDACIEAGIHPVFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + + + D L VLL +G + L +L S + + K+ I Sbjct: 64 --MTVYLTDGLYQL-----------ETVLLAQNNDGLKDLYQLSSAIKM----KEKEDIP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 + WL+ +I+ G E+ F + F D+ +V L + Sbjct: 107 IEWLKRYANHLIIIFKG-----------------VEEHHQLFIEAFHDKKHVYLNQ---- 145 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKDRPRV 248 V N +L++ED + L A+ ++ V Q+D Sbjct: 146 ---------DCIAIENRSFVWLNTMRYLNKEDADTISALQAIKENSKLDLVAEQEDYHE- 195 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 ++ N++E+ ++ + E + T EIA+ C+ L H +LP+F + Sbjct: 196 ----HVFNKNELRNLEIN-DELIIKTDEIAQLCTAELNYHQSLLPQF---------QTPN 241 Query: 309 NELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL + LE +L + + DY +RL E ++I M F YFLIV+D I +A Sbjct: 242 GELSKTYLWQKLEEKLNHLNLNR----PDYWERLKHEYDIITNMGFEDYFLIVSDLIHYA 297 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR Sbjct: 298 KTHDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRR 357 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 ++VI+YVQ KYG V+ I+TFG L A+A RDVGR + ++ + KLIP+ + Sbjct: 358 EKVIQYVQEKYGQLHVSGIVTFGHLLARAVARDVGRIMGFEEITLNEISKLIPHKLG--I 415 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +L+ + F++ + +R EI +KLEGL RH STHAAGI+I D L + P+ Sbjct: 416 TLEEAYQNDEFKQFVHRNYRHERWFEICKKLEGLPRHTSTHAAGIIINDHALYEYAPL-- 473 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606 + +TQ+ M E+ GL+K DFLGL+ L+++ + ++ + + + +++ IPFDD Sbjct: 474 TLGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIINQVKKDLNISIEIESIPFDDP 533 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + LL+ T GIFQLES G+R+ L+ ++P+ EDI+A+ SLYRPGP++ I Y R+ Sbjct: 534 KVFELLSQGDTTGIFQLESDGVRRVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRQ 593 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 K+ +H + P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ Sbjct: 594 DPSKVEYLHEDLAPILKNTYGVIIYQEQIMQIASQFANFSYGEADILRRAMSKKNRAVLE 653 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +++ F+ GA +NG + ++ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP Sbjct: 654 SERQHFVDGAKQNGYDEYMSKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPNY 713 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A ++ + + +K +A+ +I I+PP++N +K ++ IY SL AIKGVG Sbjct: 714 FYANILSNVIGSEKKTAAMIDEAKHQSITILPPNINESYWFYKATNDGIYLSLGAIKGVG 773 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + + I+ E + F DF R+ + R++LESL+ GA D FG +R LL S+ Sbjct: 774 YQSVKLIVDERYQNGDFKDFFDFARRLPKRVKTRKLLESLILVGAFDIFGKNRATLLHSI 833 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D + +E++ + +F F+ K + E+ + + E E+ LGFY S Sbjct: 834 DQVIDQVTDIEQD-----DMLF----DFFTPKQSYEEKEELSDQLISEYEKEYLGFYISK 884 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP++ K +K + Y+ S A N + ++ +T+ G + +VT ++ Sbjct: 885 HPVE--KEFNKKQYLTIYKLSNAK---NYQPILVQFNQIKRIRTKNGQNMAFVTLNDGVH 939 Query: 1026 EYEANFFP 1033 + FP Sbjct: 940 LLDGVIFP 947 >gi|170785363|gb|ACB37722.1| DNA polymerase III alpha subunit [Micromonospora chalcea] Length = 1031 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 338/929 (36%), Positives = 503/929 (54%), Gaps = 64/929 (6%) Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYD---RYRESQVVQL 203 TG SG + A K ++ +FG D ++ L H G D R RE + ++ Sbjct: 4 TGCPSGAVQTRLRLGQFDEAIKVASAYQDIFGKDNYFLELMDH-GLDIERRVREG-LTEI 61 Query: 204 AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-LKNRSEMVS 262 +P V TN+S + E EAHDVL+ V + ++ +R R Y +K+ +M + Sbjct: 62 GKKLGIPPVVTNDSHYTHEAQAEAHDVLLCVQTGSNIADPNRFRFEGGGYFIKSADQMRA 121 Query: 263 IFSD--LPEALENTVEIARRC--SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318 + S + NT+ +A + + + + H ++PRF E + EE+ R + G Sbjct: 122 VDSSELWLQGCRNTLLVAEKVDPAGMFEFHN-LMPRFPIPEGE----TEESWFRKETFKG 176 Query: 319 LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378 L R G I +G+ Q ++EL VI +M F YFL+VADFIQWAK I VGPGR Sbjct: 177 LARRFP-GGIPEGHVVQ-----AEYELGVIIQMGFPSYFLVVADFIQWAKNQGIAVGPGR 230 Query: 379 GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438 GS AGS+ AYAL ITD+DP+ L+FERFLNP+R+SMPD DIDF + RR EVI+YV +K+ Sbjct: 231 GSAAGSLVAYALGITDLDPIPHGLIFERFLNPERVSMPDVDIDFDERRRGEVIKYVTDKW 290 Query: 439 GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-------------DPAH 485 G ++VAQI TFG+++AKAA++D R L PY+ DR+ K +P DP H Sbjct: 291 GEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGDRITKAMPPAVMGKDIPLSGIFDPKH 350 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 P +A R +DP V ++++ ++ +EGL R HAAG+++ P+ + +P+ Sbjct: 351 PRYAEA----GEIRGLYESDPDVKKVIDTAKGIEGLIRQTGVHAAGVIMSAEPIIEHIPL 406 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFD 604 R + +TQF+ E GL+K DFLGL+ LT++ ++ + G +DL + D Sbjct: 407 MRRDSDGVIITQFDYPTCESLGLLKMDFLGLRNLTIIDDAVKNIQLNHGKDLDLLGLDLD 466 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYN 662 D Y LL TLG+FQL+ MR L M+PD EDI A+++LYRPGP +D+ Y Sbjct: 467 DKAAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVLALYRPGPMGVDSHTNYA 526 Query: 663 NRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 RKNG ++I IHP ++ L+E T G+I+YQEQV + AQ+L+GY+L +AD+LRRAMG Sbjct: 527 LRKNGLQEITPIHPELEEPLREILAPTHGLIVYQEQVQRAAQILAGYTLGQADLLRRAMG 586 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK KE +DK+ F G + G S ++++L FA Y FNK+H+AAY ++SY TA+ Sbjct: 587 KKKKEILDKEFVPFRDGCRERGYSDEAIQAVWDVLVPFAGYAFNKAHSAAYGLVSYWTAY 646 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYP E++A +T D+ +K+ + + R+ IQ++PP VNT F I + Sbjct: 647 LKAHYPAEYMAGLLTSVGDDKDKMALYLSECRRMGIQVLPPDVNTSAGPFTPVGKDIRFG 706 Query: 839 LAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 LAAI+ VG IM +K + DF ++VD+ N++ +ESL+ AGA D G+S Sbjct: 707 LAAIRNVGANVVASIMRCRQEKGEYADFYDFLAKVDAVVCNKKTIESLIKAGAFDVMGHS 766 Query: 898 RMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV------ 950 R LL D I YA K +++ A F D T+ + ++ Sbjct: 767 RKGLLAVHADAIDAYADVKRKEAVGQYDLFGA----GFGDTETVGGNTTVMPTIGEAEWD 822 Query: 951 ---RFENEQRVLGFYFSGHPLDVYKPILRKMG---IKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ +LG Y S HPL + +L I E G + LA ++ Sbjct: 823 KRDKLAFEREMLGLYVSDHPLFGLEHVLGAAADCTIAALSEEGTVPDGAVVTLAGILSGV 882 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 Q++ T++G T + A EA FFP Sbjct: 883 QRRVTKQGRAWASATLEDLAGGVEALFFP 911 >gi|75907825|ref|YP_322121.1| DNA polymerase III subunit alpha [Anabaena variabilis ATCC 29413] gi|75701550|gb|ABA21226.1| intein [Anabaena variabilis ATCC 29413] Length = 877 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 313/815 (38%), Positives = 477/815 (58%), Gaps = 69/815 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D+ A AIA+TD ++ A+E + + I+P Sbjct: 2 SFVPLHIHSDYSLLDGASQLPELIDQAIALGMKAIAVTDHGVMYGAIELLKICRSKNIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS- 128 IIG ++ I + +L +G+ + V +L +GY+ L++L + +L QG Q Sbjct: 62 IIGNEMYI-LNGDLAKQERGRPKYHQV----VLAKNTKGYKNLVKLTTISHL--QGVQGK 114 Query: 129 ---VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 R C++ L+E EGLI+ + G I +A N A K +K +FGD Y Sbjct: 115 GIFSRPCINKDLLKEY-HEGLIVTSACLGGEIPQAILSNRPDAARKVAKWYKDVFGDDFY 173 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR +++++A ++ VATN+S ++S D EAHD L+ + ++S+ Sbjct: 174 LEIQDHGSQEDRIVNVEIIKIARELDIKFVATNDSHYISCFDVEAHDALLCIQTGKLISE 233 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFI 296 R R + YLK+ EM +F D + EA+ T E+A + + P +P + Sbjct: 234 DKRMRYSGTEYLKSGEEMKLLFRDHLTDDVIAEAIATTEEVADKIEPYHIMGEPRIPNYP 293 Query: 297 --EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 D EE A GL +L + + + YR+RL++EL ++ +M FS Sbjct: 294 IPSGHTPDTYVEE------VAWQGLLDKLNRKS--RNEVEPVYRERLEYELKMLQQMGFS 345 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFL+V D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+ LLFERFLNP+R S Sbjct: 346 SYFLVVWDYIKFARDNNIPVGPGRGSAAGSLVAYTMGITNIDPVHHGLLFERFLNPERKS 405 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD D DFC ++RD+VI YV +KYG ERVAQIITF L +KA L+DV R L +PY + D+ Sbjct: 406 MPDIDTDFCIEQRDKVIEYVTDKYGKERVAQIITFNRLTSKAVLKDVARVLNIPYGEADK 465 Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 + KLIP P L+ + D+ F+E DP V L+++ ++EG + HAA Sbjct: 466 MAKLIPVVRGKPTKLKVMVSDTTPEPEFKEKYDNDPRVRHWLDMAMRIEGTNKTFGVHAA 525 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI PL ++VP+ ++ + +TQ+ M+ +E GL+K DFLGLK LT++QK++D + Sbjct: 526 GVVISADPLDEIVPLQKNNDGSV-ITQYFMEDLESMGLLKMDFLGLKNLTMIQKTIDLIE 584 Query: 591 QR-GVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 ++ G ++D +P D +TY LL + GIFQLESSGM+Q Sbjct: 585 EKHGFRIDPYEITSQERKAQKILAKGEYKTLPKDVQKTYELLESGELEGIFQLESSGMKQ 644 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688 + ++P IEDI ++++LYRPGP+D ++ + NRK+G+E I +++P+L ET G+ Sbjct: 645 IVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGRENIDYESQVLEPILNETYGI 704 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 ++YQEQ+M+IAQ ++GY+L +AD+LRRAMGKK EM KQ+E+FI G++KNG+ K +A Sbjct: 705 MVYQEQIMKIAQDMAGYTLGQADLLRRAMGKKKVSEMQKQQEKFIDGSTKNGVKKQVAEK 764 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +FE + KFA+Y +SY T + Y Sbjct: 765 LFEDMLKFAEY-----------CLSYDTEVLTVEY 788 >gi|289425264|ref|ZP_06427041.1| DNA polymerase III subunit alpha [Propionibacterium acnes SK187] gi|295130708|ref|YP_003581371.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137] gi|289154242|gb|EFD02930.1| DNA polymerase III subunit alpha [Propionibacterium acnes SK187] gi|291376065|gb|ADD99919.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137] gi|313772287|gb|EFS38253.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL074PA1] gi|313792016|gb|EFS40117.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA1] gi|313802034|gb|EFS43268.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA2] gi|313810152|gb|EFS47873.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL083PA1] gi|313812820|gb|EFS50534.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL025PA1] gi|313827619|gb|EFS65333.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL063PA2] gi|313830483|gb|EFS68197.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL007PA1] gi|313833519|gb|EFS71233.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL056PA1] gi|313838855|gb|EFS76569.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL086PA1] gi|314962672|gb|EFT06772.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL082PA1] gi|314973483|gb|EFT17579.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL053PA1] gi|314976163|gb|EFT20258.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL045PA1] gi|314983815|gb|EFT27907.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA1] gi|315077888|gb|EFT49939.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL053PA2] gi|315080513|gb|EFT52489.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL078PA1] gi|315096030|gb|EFT68006.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL038PA1] gi|327326310|gb|EGE68100.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL096PA2] gi|327445796|gb|EGE92450.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL043PA2] gi|327448221|gb|EGE94875.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL043PA1] gi|327453265|gb|EGE99919.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL092PA1] gi|328760728|gb|EGF74294.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL099PA1] Length = 1190 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 333/1014 (32%), Positives = 531/1014 (52%), Gaps = 76/1014 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 6 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 I+PIIG + D D + ++ G+ + + Sbjct: 66 PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 +EG L L S + + R+ + + + G+I TG SG + Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276 +E+ +AHD L+ V V KD P +Y+K+ +M ++F D PEA +NT+ Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295 Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 + +V + +P+F E + +E+ LR K GL+ + Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++ +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 I+PL LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++A Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505 KAA++D R L P++ D++ K +P D V L I D S FR+ + Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P V +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ L ++ + + A RG+ VDL I DD TY +L TLG+FQL+ Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678 + MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 D +L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G + Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 +G S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K+ + D R +I ++PP VN ++F I + L AI+ VG I+ A Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + P F +V N+R++ESL+ AGA D G+SR L+ +++ Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N+ N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999 >gi|313837783|gb|EFS75497.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA2] gi|314927335|gb|EFS91166.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL044PA1] gi|314972435|gb|EFT16532.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA3] Length = 1219 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 330/1011 (32%), Positives = 528/1011 (52%), Gaps = 70/1011 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 35 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 94 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 ++PIIG + D D + ++ G+ + + Sbjct: 95 PLVKPIIGIEAYVAPSTRTSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 149 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 EG L L S + + R+ + + +G+I TG SG + Sbjct: 150 AKDPEGLHNLFRL-SSLASYEGYYMKPRMDRELMSQY-PDGIIASTGCPSGEVQTRLRLG 207 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 208 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLRLAKKLDIPLLVTNDSHYV 267 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 268 TEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDYPEACDNTLLLTE 327 Query: 280 RCSFILQV--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337 +V H +P+F E + +E+ LR K GL+ + ++ Sbjct: 328 MIGSYDEVFKHVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKEV 377 Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397 +RL+ EL+VI + FS YFLIV+D A+ +PVGPGRGS AGS+ AY I I+P Sbjct: 378 LERLETELSVIEPLGFSSYFLIVSDICSAARSMGVPVGPGRGSAAGSLVAYLTGIIAINP 437 Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457 L LLFERFLNP+R++ PD D+DF +RD+VI YV KYG E +Q+ TFG ++AKAA Sbjct: 438 LEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTYKYGAEYTSQVNTFGKIKAKAA 497 Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLADPSV 508 ++D R L P+S D++ K +P D V L I D S FR+ +P V Sbjct: 498 VKDANRILGYPFSLGDKITKAMPPDVMGKGVPLDKIFDPSHERYGEGQEFRQLVADNPDV 557 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 ++++ ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL Sbjct: 558 AKVVDTARGLEGLIRGTGVHACAFILSSAPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGL 617 Query: 569 IKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 +K DFLGL+ L ++ + + RG+ VDL + DD TY +L TLG+FQL+ + Sbjct: 618 MKMDFLGLRNLGIMDHCIKIIKDNRGIDVDLKDLALDDTATYEMLARGDTLGVFQLDGTA 677 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPM 681 MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP +D + Sbjct: 678 MRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEI 737 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G Sbjct: 738 LAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGY 797 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K Sbjct: 798 SDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDK 857 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860 + + D R +I ++PP VN ++F I + L A++ VG I+ A + Sbjct: 858 MAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENG 917 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 P F RV N+R++ESL+ AGA D G+SR L+ + +++N+ Sbjct: 918 PAPDFFTFLDRVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAIYEQAVDAVIDIKRNQV 977 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 978 NGQDDLFGMGDDSQPSQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 1028 >gi|307154137|ref|YP_003889521.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7822] gi|306984365|gb|ADN16246.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7822] Length = 875 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 319/816 (39%), Positives = 477/816 (58%), Gaps = 70/816 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D+ PAIA+TD ++ A+E + I+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAIELIKICRGKNIKP 61 Query: 70 IIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMYLLDQ 124 IIG ++ I D+ D K + V+L +GY+ L++L +S ++ + Sbjct: 62 IIGNEMYIINADLDDRTKKQRKYHQ--------VVLAKNNQGYKNLVKLTTISSLHGMHG 113 Query: 125 GKQSVRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 R C++ L E EGLI+ + G + +A + + A+K ++ LFGD Y Sbjct: 114 KGIFARPCINKKLLEQYHEGLIVTSACLGGEVPQAILAGNLEEAKKVAKWYQDLFGDDYY 173 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR +V++A + +VATN+S F+S D EAHD L+ + ++S+ Sbjct: 174 LEIQDHGSKEDRIVNLGIVKIAKELGIKIVATNDSHFISCYDVEAHDALLCIQTGQLISE 233 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHA-PILPRF 295 + R R + YLK+ EM +F D + EA++NT+E+A + ++ P +P + Sbjct: 234 EKRMRYSGTEYLKSAEEMRQLFRDHLEDEIIEEAIKNTLEVAEKVVQDYKILGEPRIPDY 293 Query: 296 I--EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 D EE KA GL RL +I + Y++RL++EL +I +M F Sbjct: 294 PVPAGHTPDTYVEE------KAWQGLLERLKCHSITELNPL--YKKRLEYELKMIQQMGF 345 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 S YFL+V D+I++A+ N IPVGPGRGS AGS+ AY+L IT+IDP+ LLFERFLNP+R Sbjct: 346 STYFLVVWDYIKYARDNGIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERK 405 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC +RRD++I+YV KYG VAQIITF L +KA L+DV R L +PY++ D Sbjct: 406 SMPDIDTDFCIERRDDMIKYVTKKYGEGNVAQIITFNRLTSKAVLKDVARVLDIPYAESD 465 Query: 474 RLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 ++ KLIP P L+ + D F+ DP+V R ++++ ++EG + HA Sbjct: 466 KMAKLIPVSRGKPTKLKVMISDETPEPEFKAKYDNDPNVKRWVDMAIRIEGTNKTFGVHA 525 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI +PL ++VP+ ++ + +TQ+ M+ +E GL+K DFLGLK LT LQK+ + + Sbjct: 526 AGVVISSQPLDEIVPLQKNNDGAV-ITQYYMEDLESLGLLKMDFLGLKNLTTLQKTAELI 584 Query: 590 AQ-RGVKVDLSLIPFD------------------DHETYHLLTTKGTL-GIFQLESSGMR 629 Q + +D+ +P D D E H L +G L GIFQLESSGMR Sbjct: 585 KQNKQEDIDVETLPLDERKALEIIAKGVYKKLPKDIEATHKLLERGDLEGIFQLESSGMR 644 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687 Q + ++P IEDI ++++LYRPGP+D ++ + +RK+G+ I HPL++P+LKET Sbjct: 645 QIVRDLKPSGIEDISSILALYRPGPLDAGLIPKFIDRKHGRVPIKYDHPLLEPILKETYA 704 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK EM K KE FI G++KNG+ + IA Sbjct: 705 VLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMQKHKEIFIDGSTKNGVPQEIAE 764 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 N+F+ + KFA+Y +SY T + Y Sbjct: 765 NLFDQMVKFAEY-----------CLSYDTEILTVEY 789 >gi|255535519|ref|YP_003095890.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium 3519-10] gi|255341715|gb|ACU07828.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium 3519-10] Length = 1567 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 331/1039 (31%), Positives = 547/1039 (52%), Gaps = 92/1039 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58 + + HS YS L+ + +N ++ K + A+ I D N+ A +F Sbjct: 263 YFNFHNHSIYSSLQSSTHINELISKAMDNDLKAVGIVDLGNMMGAFKFVSEVEKTNAQIK 322 Query: 59 ---------SQKACAAG------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97 +KA G + P+IGC+ I + K + T Sbjct: 323 KTYQTYLENKEKADREGTAFTEKEPRKEPLIPVIGCEFYISDRPEQKQFTKDDPDRRT-- 380 Query: 98 SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157 ++VLL GY+ L++L S Y+ RI + E + LI LT G+ G + Sbjct: 381 NVVLLAKNFSGYKNLVKLSSLGYVNGFYFGVPRISRKMIAEF-KDNLIALTAGTLGDVPS 439 Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNN 216 Q E+ +K FG+ YV +Q H + ++V + A +++ ++A N Sbjct: 440 TVLEFGEQKGEEVFKWWKNTFGEDFYVQIQNHEVEEEEHLNEVLLGFADQYDVKILAQNE 499 Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQ-------KDRPRVTPDHYLKNRSEMVSIFSDLPE 269 + + ++ D D+L + +S K R + Y+KN E+ F P+ Sbjct: 500 TFYTNKSDANIQDILYCIKDGEKLSSPVGKGFGKRRGLPSKQFYIKNTDELKQSFIQFPD 559 Query: 270 ALENTVEIARRCSFILQVHAPILPRFI--------EKECDDIQKEEENELRNKAVAGLEV 321 A E E+ + +LP F E + D ++ E LR+ AG E Sbjct: 560 AFEAYTELLGKFEPYTLKRDVLLPEFDIPEEFLHDEDKTDGGKRGENAYLRHLTYAGAEK 619 Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 R + + R+RLDFEL VIA+ + GYFLIV DF A+K + VGPGRGS Sbjct: 620 RYPE-------ITDEIRKRLDFELEVIAKTGYPGYFLIVQDFCNEARKMGVWVGPGRGSA 672 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGS AY IT++DP+ ++LLFERFLNP+R+SMPD DIDF + RD++I++V KYG Sbjct: 673 AGSAVAYCTGITNVDPIEYNLLFERFLNPERISMPDIDIDFDDEGRDKIIKWVVEKYGKN 732 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-----LQAIADDS 496 VAQIIT+ L K+A++D GR L + + + + KLIP+ P ++ + + + Sbjct: 733 NVAQIITYSVLGGKSAIKDAGRVLDLSIPETNNIAKLIPSAPGMNIAKAFSKFEKLPPED 792 Query: 497 RF--REAR--LADPSVDR--LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + +E + LA+P+ +R +L +Q++EG R+ HA G++I +S L+P+ + Sbjct: 793 KVLAQEMKDILANPTDERYDVLYAAQRMEGCIRNTGIHACGVIITPEDISNLIPITIAAK 852 Query: 551 S-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608 D+ V+QF+ E AGL+K DFLGL+TLT+++ ++ + +R G ++D+ +P DD +T Sbjct: 853 DPDILVSQFDNSVAESAGLLKMDFLGLRTLTIIKHAIKLIKERHGTEIDIDHVPLDDAKT 912 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y L T+GIFQ ES GM++ + ++P D+IA+ +LYRPGPI I + NRKN Sbjct: 913 YQLFQEGRTIGIFQYESPGMQKYMRELKPTKFADLIAMNALYRPGPIKYIPNFINRKNEI 972 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E+ V L+ET G+ +YQEQVM ++Q L+ ++ EAD LR+AMGKK + +DK Sbjct: 973 EETVYDLEETKEFLEETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKDRATLDKM 1032 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 +F+ KN ++ I++ FA+Y FNKSH+ YA+I+Y TA++K +YP E++ Sbjct: 1033 YPKFLEEGQKNNLNVDKLNKIWKDWEAFAEYAFNKSHSTCYALIAYHTAYLKANYPAEYM 1092 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGT 847 A+ MT ++N ++I F +D + + ++ P+VN +F V + +I + L AIKG+G+ Sbjct: 1093 ASVMTNNLNNTKQITMFMEDCKSIGVDVLGPAVNESQYEFSVNEKGQIRFGLGAIKGIGS 1152 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ--- 903 + I++ ++ + ++ DF ++ S ++N+RV ESLV AGA D Y R Q Sbjct: 1153 GPSEAIVDGRKNEKYKNIYDFFEKIPSSQMNKRVAESLVVAGAFDEVDRYHRAQYFDIDI 1212 Query: 904 ----SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN----- 954 +++ + +Y Q + ++ ++FA F++++ +E+ + N + ++N Sbjct: 1213 TGKTTIERLLRYGQSFQDSKNEIENSLFAD----FAEEVKIEQPKI-NPAPEWQNMHMLN 1267 Query: 955 -EQRVLGFYFSGHPLDVYK 972 E+ ++GFY S HPLD Y+ Sbjct: 1268 KEKEIIGFYLSAHPLDEYR 1286 >gi|314918129|gb|EFS81960.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA1] Length = 1190 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 332/1014 (32%), Positives = 531/1014 (52%), Gaps = 76/1014 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 6 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 I+PIIG + D D + ++ G+ + + Sbjct: 66 PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 +EG L L S + + R+ + + + G+I TG SG + Sbjct: 121 AKDSEGLHDLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276 +E+ +AHD L+ V V KD P +Y+K+ +M ++F D PEA +NT+ Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295 Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 + +V + +P+F E + +E+ LR K GL+ + Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++ +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 I+PL LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++A Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505 KAA++D R L P++ D++ K +P D V L I D S FR+ + Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P V +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ L ++ + + A RG+ VDL I DD TY +L TLG+FQL+ Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678 + MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E ++ IHP + Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPVIPIHPELKEDL 705 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 D +L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G + Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 +G S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K+ + D R +I ++PP VN ++F I + L AI+ VG I+ A Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + P F +V N+R++ESL+ AGA D G+SR L+ +++ Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N+ N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999 >gi|328907421|gb|EGG27187.1| DNA polymerase III subunit alpha [Propionibacterium sp. P08] Length = 1190 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 330/1011 (32%), Positives = 528/1011 (52%), Gaps = 70/1011 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 6 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 ++PIIG + D D + ++ G+ + + Sbjct: 66 PLVKPIIGIEAYVAPSTRTSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 EG L L S + + R+ + + +G+I TG SG + Sbjct: 121 AKDPEGLHNLFRL-SSLASYEGYYMKPRMDRELMSQY-PDGIIASTGCPSGEVQTRLRLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLRLAKKLDIPLLVTNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 239 TEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDYPEACDNTLLLTE 298 Query: 280 RCSFILQV--HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337 +V H +P+F E + +E+ LR K GL+ + ++ Sbjct: 299 MIGSYDEVFKHVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKEV 348 Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397 +RL+ EL+VI + FS YFLIV+D A+ +PVGPGRGS AGS+ AY I I+P Sbjct: 349 LERLETELSVIEPLGFSSYFLIVSDICSAARSMGVPVGPGRGSAAGSLVAYLTGIIAINP 408 Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457 L LLFERFLNP+R++ PD D+DF +RD+VI YV KYG E +Q+ TFG ++AKAA Sbjct: 409 LEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTYKYGAEYTSQVNTFGKIKAKAA 468 Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLADPSV 508 ++D R L P+S D++ K +P D V L I D S FR+ +P V Sbjct: 469 VKDANRILGYPFSLGDKITKAMPPDVMGKGVPLDKIFDPSHERYGEGQEFRQLVADNPDV 528 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 ++++ ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL Sbjct: 529 AKVVDTARGLEGLIRGTGVHACAFILSSAPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGL 588 Query: 569 IKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 +K DFLGL+ L ++ + + RG+ VDL + DD TY +L TLG+FQL+ + Sbjct: 589 MKMDFLGLRNLGIMDHCIKIIKDNRGIDVDLKDLALDDTATYEMLARGDTLGVFQLDGTA 648 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPM 681 MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP +D + Sbjct: 649 MRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEI 708 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G Sbjct: 709 LAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGY 768 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K Sbjct: 769 SDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDK 828 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860 + + D R +I ++PP VN ++F I + L A++ VG I+ A + Sbjct: 829 MAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENG 888 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 P F RV N+R++ESL+ AGA D G+SR L+ + +++N+ Sbjct: 889 PAPDFFTFLDRVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAIYEQAVDAVIDIKRNQV 948 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 949 NGQDDLFGMGDDSQPSQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999 >gi|325956638|ref|YP_004292050.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC] gi|325333203|gb|ADZ07111.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC] Length = 1035 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 339/1031 (32%), Positives = 537/1031 (52%), Gaps = 58/1031 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ + +++ A+ + D N + + F + A GI+P++G Sbjct: 6 LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-C 132 Q+ ++ G +++ T GY L+ L S + LL + Q+ +I Sbjct: 66 QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + F N Q+ L KK+ D Y+ + + Sbjct: 116 LKELTKYLEDLLVIIPANTRSELVYLFETNQ-QLGSDYLRDLKKIVPD-FYLGVYAAKNA 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251 Y + V L+ +LPLVA +S +L D L A+ S Q P D Sbjct: 174 QDYLDY-VRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAI-RSGQKMQDMVPLAKQDG 231 Query: 252 -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HY+ + +M+ + DL +A+ NT +IA +C+ + P+LP++ + + E Sbjct: 232 SHYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKF----PTSE 287 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L A GL+ R Q I +Y++RL++EL +I +M F YFLIV D I + Sbjct: 288 EYLHYLAQTGLQARFGQEKIPT-----EYQKRLNYELRIINQMGFDDYFLIVWDVINYCH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS GS+ +Y+L IT++DPL++ LLFERFLNP R MPD D+D RD Sbjct: 343 RVKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRD 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + +V++ + IP Sbjct: 403 TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWVRAIPFSKGKMTL 462 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 QA + R A L + LEGL RH S HAAG+VI D ++ + + Sbjct: 463 KQAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQAG 522 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 +PVTQ K++E GL+K DFLGL+ LT+L LD + +GVK+D + IP +D +T Sbjct: 523 PLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKT 581 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 L T IFQ ES G+R+ L + PD ED++A+ +LYRPGP+ NI + RKNG Sbjct: 582 LELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGN 641 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++ Sbjct: 642 EPVRYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQE 701 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 K +FI+G KNG SK + ++ + +FA+YGFN+SHA AY I++ A++K HYP F Sbjct: 702 KSKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFY 761 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 A L K +++ A++ NI+++ P +N +++ + +N I L AIKG+ Sbjct: 762 TA--MLNSSTSAKAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVD 819 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 A+ I A+ KP+ SL DF R+DSK L +E+L+ AGA D +R +LL + +I Sbjct: 820 FAKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDI 877 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 Q +NI E D L+ + + + E E++VLGF + PL Sbjct: 878 IANVQLT-------GQNISLSE--ILGDA-PLKPAEIPTNGEKAEMEEKVLGFATTTTPL 927 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRL------AAMVVSKQQKKTRKGSRIGWVTFSE 1022 + ++ Y + + N + ++S ++ +T+ + + F++ Sbjct: 928 ---------VAVQKYAQKFNALPLNQFQFNESGIGVGKLMSLKRIRTKNDKTMAFAGFAD 978 Query: 1023 PAKEYEANFFP 1033 + + E FP Sbjct: 979 SSSQQEVIIFP 989 >gi|313764330|gb|EFS35694.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL013PA1] gi|313815868|gb|EFS53582.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL059PA1] gi|314915320|gb|EFS79151.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA4] gi|314920206|gb|EFS84037.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA3] gi|314931729|gb|EFS95560.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL067PA1] gi|314955630|gb|EFT00032.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL027PA1] gi|314958026|gb|EFT02129.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA1] gi|315098658|gb|EFT70634.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL059PA2] gi|315101339|gb|EFT73315.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL046PA1] gi|327450658|gb|EGE97312.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA3] gi|327454004|gb|EGF00659.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL083PA2] gi|328753262|gb|EGF66878.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL025PA2] gi|328754076|gb|EGF67692.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA1] Length = 1190 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 332/1014 (32%), Positives = 531/1014 (52%), Gaps = 76/1014 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 6 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 I+PIIG + D D + ++ G+ + + Sbjct: 66 PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 +EG L L S + + R+ + + + G+I TG SG + Sbjct: 121 AKDSEGLHDLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276 +E+ +AHD L+ V V KD P +Y+K+ +M ++F D PEA +NT+ Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295 Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 + +V + +P+F E + +E+ LR K GL+ + Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++ +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 I+PL LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++A Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505 KAA++D R L P++ D++ K +P D V L I D S FR+ + Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P V +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ L ++ + + A RG+ VDL I DD TY +L TLG+FQL+ Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678 + MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E ++ IHP + Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPVIPIHPELKEDL 705 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 D +L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G + Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 +G S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K+ + D R +I ++PP VN ++F I + L AI+ VG I+ A Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + P F +V N+R++ESL+ AGA D G+SR L+ +++ Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N+ N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999 >gi|238855206|ref|ZP_04645525.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 269-3] gi|260664570|ref|ZP_05865422.1| DNA polymerase III alpha-chain [Lactobacillus jensenii SJ-7A-US] gi|282932500|ref|ZP_06337925.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1] gi|238832098|gb|EEQ24416.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 269-3] gi|260561635|gb|EEX27607.1| DNA polymerase III alpha-chain [Lactobacillus jensenii SJ-7A-US] gi|281303449|gb|EFA95626.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1] Length = 1039 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 336/1036 (32%), Positives = 553/1036 (53%), Gaps = 64/1036 (6%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS+SLL+ + ++ ++ ++A+TD N + ++F A A + P++G Sbjct: 6 LQTLSSFSLLKSPILVDELVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKANLNPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132 + ++ M +Q ++ + EGY+ L+ L S + L D G + + Sbjct: 66 TIRLN-----GMIDQAHRY-----DLISIAKNNEGYKNLLRLSSAINLKTDNGDERKVLT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNL--QR 188 L + + ++ + ++ + + R N+ ++ L +K+ LY+ + + Sbjct: 116 LKQVAKYLSDQIFIIPANVTSEL-RYLSENNEKLGSDYLRELQKIIPSSSDLYLGVYASK 174 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247 ++ Y Y V LA LPL A + +L D L A+ +V Sbjct: 175 NQPYINY----VKALAAQFNLPLAAAEDVQYLQASDQFLVKTLRAIEQGQKLVDTSSLAL 230 Query: 248 VTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 HYL++ E+V+ +++ + EAL N +IA C + P LPR+ + + Sbjct: 231 QKGSHYLRSSGELVAAYNENGIIEALHNAAKIADECKAEVIFTQPELPRYRQ----NFAP 286 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR GLE R KG + + Y++RLD+EL +I +M F YFLIV D I Sbjct: 287 SSKIYLRQLVQKGLENRF------KGQNIPEIYQKRLDYELKIINQMGFDDYFLIVWDVI 340 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A +I GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R MPD D+D Sbjct: 341 NYAHSVDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPD 400 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RRDE+I+Y+ KYG + AQI+TFG+L AK ALRD R + Q + IP Sbjct: 401 NRRDEIIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTVQASKFTHAIPFSKV 460 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++L +S+ + + +++LL + +LEG+ RHAS HAAG+VI D+ ++Q+ Sbjct: 461 K-ITLSQAYQESKALQLLVNASELNKLLFRTAMRLEGIPRHASIHAAGLVISDKSIAQIA 519 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 + +PVTQ +E+ GL+K DFLGL+ LT+L ++++ LA+ G+K+D IP Sbjct: 520 GLQAGTLG-IPVTQQTKAHVEELGLLKIDFLGLRNLTILGETVELLAKDGIKLDPKQIPL 578 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D +T L T +FQ ES G++ L+ + PD ED++A+ +LYRPGPI NI + N Sbjct: 579 NDAKTLQLFQKGQTDAVFQFESQGIKNVLKRLHPDSFEDVVAVNALYRPGPIQNIDHFIN 638 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK GKE I + +LK T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK ++ Sbjct: 639 RKQGKEAITYPDSSLAQLLKPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQD 698 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +D+++E+FI+GA KNG + A ++ + +FA+YGFN+SHA AY+ I++ A++K HY Sbjct: 699 LIDQEREKFITGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHY 758 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P F A + N K ++ A++ ++I+PP +N D+ + + +I L AIK Sbjct: 759 PAAFFTALLNSVSANRIKAGEYITQAQEVGVKILPPDINQSQTDYSLLNGQIQVGLKAIK 818 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G+ ++I A+ K F SL DF ++D+K L+ + + +++ AG D +R LL Sbjct: 819 GIRVDFLKNI--ANLPKNFSSLADFLRKIDAKFLSEQTIAAMIKAGCFDKIDKNRKMLLL 876 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 + I + ++ +N T + G I LE+ N++ + E+ VLGF Sbjct: 877 NCKEIVENIKFTGQNET------LSEGLGG----IRLEQAPAPNANEKATMEEEVLGFST 926 Query: 964 SGHPLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQK----KTRKGSRIGW 1017 + P+ V ++ Y E + T+ + + V K K +T+KG + + Sbjct: 927 TKTPILV---------VQKYAERFNAQTLNSFTVNETGIAVGKLIKLKLIRTKKGDTMAF 977 Query: 1018 VTFSEPAKEYEANFFP 1033 TF + + E E FP Sbjct: 978 STFRDASSEQEITIFP 993 >gi|315108557|gb|EFT80533.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL030PA2] Length = 1190 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 333/1014 (32%), Positives = 530/1014 (52%), Gaps = 76/1014 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 6 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 I+PIIG + D D + ++ G+ + + Sbjct: 66 PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 +EG L L S + + R+ + + + G+I TG SG + Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 179 QFDEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276 +E+ +AHD L+ V V KD P +Y+K+ +M ++F D PEA +NT+ Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295 Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 + +V + +P+F E + +E+ LR K GL+ + Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++ +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 I+PL LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++A Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505 KAA++D R L P++ D++ K +P D V L I D S FR+ + Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P V +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ L ++ + + A RG+ VDL I DD TY +L TLG+FQL+ Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678 + MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 D +L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G + Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 +G S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K+ + D R +I ++PP VN ++F I + L AI+ VG I+ A Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + P F +V N+R++ESL+ AGA D G+SR L+ +++ Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N+ N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999 >gi|296393842|ref|YP_003658726.1| DNA polymerase III subunit alpha [Segniliparus rotundus DSM 44985] gi|296180989|gb|ADG97895.1| DNA polymerase III, alpha subunit [Segniliparus rotundus DSM 44985] Length = 1179 Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust. Identities = 349/1014 (34%), Positives = 550/1014 (54%), Gaps = 77/1014 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL H+ YSLL+G ++ + + A + PA+ +TD N++ + EF + + G+ Sbjct: 2 SDSFVHLHNHTEYSLLDGHAQVDAMFQEAARLKMPAVGMTDHGNMWGSAEFYKASKKHGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS--------------IVLLVSTAEGYQRLI 113 +PIIG + + K F P + ++ A+G + L+ Sbjct: 62 KPIIGIEAYLAPSSRFST----KREFWGEPGQRSDDVSGSGAYTHMTMVAKDAQGLRNLM 117 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +L S Q + R+ L E G G+I TG SG + + A + Sbjct: 118 KLSSLASFEGQLGKWPRMDAELLAEHG-RGVIATTGCPSGEVQTKLRLGQFEAACEAAGR 176 Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 F+++FG + Y+ L H G D R RE +++L ++P +ATN+ ++ +E H+ Sbjct: 177 FQEIFGKENFYLELMDH-GIDIERRVRE-DLLRLGERLKIPPLATNDCHYVRQEHARGHE 234 Query: 230 VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV 287 +L+ V +S R + D +YLK M + + S++P A +NT+ IA + +V Sbjct: 235 ILLCVQTGKTMSDPGRFKFDGDGYYLKPADMMRAAWDSEVPGACDNTLLIAEQVGSYDEV 294 Query: 288 HA--PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 +P F + +D + + LR++ GL+ R G + +YR R FEL Sbjct: 295 WEVRDRMPVFPVPDGED----QNSWLRHEVDRGLQRRFPDGV------SDEYRARAAFEL 344 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI + F YFLIV D I +A+ I VGPGRGS AGS+ +YAL IT++DP++ LLFE Sbjct: 345 DVIKQKGFPSYFLIVGDLIAYARSVGIRVGPGRGSAAGSLVSYALGITNLDPIKHGLLFE 404 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R S PD DIDF RR E+IRY K+G +RVAQ+ITFG+++ KAAL+D R L Sbjct: 405 RFLNPERPSAPDIDIDFDDRRRGEMIRYASEKWGADRVAQVITFGTIKTKAALKDSARVL 464 Query: 466 --QMPYSQVDRLCKLIPNDPA-----HPVSLQAIADDSRFREAR------LADPSVDRLL 512 Q ++ DR+ K +P PA P+S + R++EA DP V ++ Sbjct: 465 HGQPGFAIADRITKALP--PAIMAKDIPLSGITNPEHERYKEATEIRELIANDPDVAKIY 522 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 E + LEGL R+A HA I++ + PL + +P+++ + +T ++ E GL+K D Sbjct: 523 ETALSLEGLIRNAGVHACAIIMSNEPLIETIPLWKRPQDGAIITGWDYPSCEDIGLLKMD 582 Query: 573 FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGL+ LT++ +++ + Q RGV++DL P DD T+ LL+ TLG+FQL+ MR Sbjct: 583 FLGLRNLTVIGDAIENIRQNRGVELDLENAPLDDPATFALLSRGETLGVFQLDGGPMRDL 642 Query: 632 LEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKET 685 L M+P DI+A++SLYRPGP ++ Y +RKNG+++I IHP L +P+ L ET Sbjct: 643 LRRMKPTGFGDIVAVLSLYRPGPMGVNAHNDYADRKNGRQQIKPIHPELEEPLKEILSET 702 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+I+YQEQ+M IAQ ++GYS+ +AD LR+AMGKK E + + E F G NG S+ Sbjct: 703 YGLIVYQEQIMFIAQKVAGYSMGKADALRKAMGKKKLEVLQAEYEGFSQGMRGNGFSEAA 762 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 +++ + FADY FNKSHAA YA+++Y T ++K +YP E++AA +T D+ +K + Sbjct: 763 VKALWDTVLPFADYAFNKSHAACYALVAYWTGYLKANYPAEYMAALLTSVGDDKDKAAVY 822 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDS 864 D R+ I ++ P VN VDF I + L+ ++ VG I+ ++ F S Sbjct: 823 LADCRKMGITVLAPDVNKSRVDFAAVGEDILFGLSGVRNVGVGLVESIIRTRESEGAFTS 882 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL----LQSLDNIQKYAQWVEKNRT 920 D+ ++ D N++ +ESL+ AG D G+ R L +++D + + + + Sbjct: 883 FSDYLAKADITACNKKAVESLIKAGGFDALGHPRKGLYLVHTEAVDAVMSTKKAEAQGQY 942 Query: 921 NKHENIFAHEKG------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 + + F E G TF +I E++ ++ + E+ +LG Y SGHPL Sbjct: 943 DLFSDFF--ESGSPELTATFEVQIPDEEWDMKQ---KLALEREMLGLYVSGHPL 991 >gi|326382578|ref|ZP_08204269.1| DNA polymerase III subunit alpha [Gordonia neofelifaecis NRRL B-59395] gi|326198697|gb|EGD55880.1| DNA polymerase III subunit alpha [Gordonia neofelifaecis NRRL B-59395] Length = 1178 Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust. Identities = 357/1081 (33%), Positives = 566/1081 (52%), Gaps = 80/1081 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL H+ YS+L+GA ++ + + AI +TD N+F A EF A GI Sbjct: 2 SGSFVHLHNHTEYSMLDGAAKMSPLFSEAERLGMTAIGMTDHGNMFGASEFYNTAKKHGI 61 Query: 68 QPIIGCQLDIDMQD--NLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + I + N K G + + ++ A G + L +L S Sbjct: 62 KPIIGIEAYIAPESRFNTKRVLWGTRDQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + Q + R+ + E EG+I TG SG + A + ++++ Sbjct: 122 LASIEGQLGKWARMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDAEALEAAGKWQEI 180 Query: 178 FG-DRLYVNLQRHRGYDRYRESQVVQLAYTHEL---PLVATNNSLFLSEEDYEAHDVLMA 233 FG + Y+ L H G + + + L +L PLV TN+ +++ E+H+ L+ Sbjct: 181 FGKENFYLELMEH-GLEIEQRVRSGLLDVGRKLGIKPLV-TNDCHYVTRGHAESHEALLC 238 Query: 234 VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHA-- 289 + +S R + D +YLK+ EM +++ D+ P ++T+EI R +V+ Sbjct: 239 LQTGKTLSDPTRFKFDGDGYYLKSAEEMRALWDDVVPGGCDSTLEIGERVQSYEEVYTHH 298 Query: 290 ---PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 PI P D +E L + +AGL+ R G +Y R ++EL+ Sbjct: 299 DRMPIFPV-----PDGFT--QETWLAREVMAGLDRRF------DGNPPGEYVTRAEYELS 345 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI +M F YFL+V D I A + I VGPGRGS AGS+ AYAL IT+IDP+ LLFER Sbjct: 346 VINQMGFPAYFLVVGDLIAHALEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFER 405 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL- 465 FLNP+R+SMPD DIDF RR E+I Y K+GH++VAQ+ITFG+++ KAA++D R Sbjct: 406 FLNPERVSMPDIDIDFDDRRRGEMITYASQKWGHDKVAQVITFGTIKTKAAIKDSARVQF 465 Query: 466 -QMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSVDRL 511 Q ++ DR+ K +P DP H + A+ + R DP V R+ Sbjct: 466 GQPGFAIADRITKALPPPIMAKDIPVWGITDPEH----ERYAEATEVRTLIETDPDVKRI 521 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 + + LEGL R+A HA +++ PL+ +P+++ + +T ++ E GL+K Sbjct: 522 YDTALGLEGLVRNAGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKM 581 Query: 572 DFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGL+ LT++ +++ + RG+ +DL +P +D ++Y LL TLG+FQL+ S MR Sbjct: 582 DFLGLRNLTVIGDAIENIKTNRGIDLDLDKLPLEDPKSYELLARGDTLGVFQLDGSAMRD 641 Query: 631 ALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE---- 684 L M+P EDI+A+++LYRPGP ++ Y +RKNG++++ IHP ++ LKE Sbjct: 642 LLRRMEPTGFEDIVAVLALYRPGPMGVNAHNDYADRKNGRQEVKPIHPELEEPLKEILAE 701 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+I+YQEQ+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+ + F G NG S+ Sbjct: 702 TFGLIVYQEQIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMRGNGFSQE 761 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +++ + FA Y FNKSHAA Y ++S+ TA++K +YP E++A +T D+ +K Sbjct: 762 AITALWDTVLPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAI 821 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863 + D R+ I ++PP VN DF I + LAAI+ VG+ I+ A +K + Sbjct: 822 YLADCRKMGITVLPPDVNASRADFAAVGEDIRFGLAAIRNVGSGVVSSIISAREEKGAYT 881 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNI--QKYAQWVEK 917 + D+ ++D + +++V ESL+ AG D G+ R L +++D + K A+ + + Sbjct: 882 NFSDYLGKIDVQACSKKVTESLIKAGGFDSLGHDRKGLFLVHSEAIDAVISTKKAEAIGQ 941 Query: 918 -NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 + + F+ K+ +++ ++ + E+ +LG Y SGHPL + + Sbjct: 942 FDLFGGVGDDGGGASDVFAVKVPEDEWETKH---KLALERDMLGLYVSGHPLAGLEHAIA 998 Query: 977 KMGIKG----YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E SVA G I + ++ S ++ +KG V + E FF Sbjct: 999 AQTDTSITSLLEGSVAD--GAQITIGGIISSVTRRVNKKGEPWAAVQLEDMVGGVEVYFF 1056 Query: 1033 P 1033 P Sbjct: 1057 P 1057 >gi|218440338|ref|YP_002378667.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7424] gi|218173066|gb|ACK71799.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7424] Length = 876 Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust. Identities = 319/818 (38%), Positives = 476/818 (58%), Gaps = 74/818 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D+ PAIA+TD ++ A+E + + I+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAIELIKICRSKNIKP 61 Query: 70 IIGCQL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMYLLDQ 124 IIG ++ + D+ D K + V+L +GY+ L++L +S ++ + Sbjct: 62 IIGNEMYVINADLDDRSKKHRKYHQ--------VVLAKNNQGYKNLVKLTTISSLHGMHG 113 Query: 125 GKQSVRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 R C++ L+E EGLI+ + G + + A+K +K LFGD Sbjct: 114 KGIFARPCINKELLKEY-HEGLIVTSACLGGEVPQNILAGKLDQAKKVAKWYKDLFGDDY 172 Query: 183 YVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q H DR +V++A ++ +VATN+S F+S D EAHD L+ + +++ Sbjct: 173 YLEIQDHGSPEDRIVNLGIVKIAKDLKIKIVATNDSHFISCYDVEAHDALLCIQTGKLIT 232 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRC----SFILQVHAPI 291 ++ R R + YLK+ EM +F D + EA+ NT+E+A + + + P Sbjct: 233 EEKRMRYSGTEYLKSADEMRQLFRDHLEDEMIEEAINNTLEVADKVVQDYKILGEPRIPD 292 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 P D +E K GL RL ++ + A Y+QRL++EL +I +M Sbjct: 293 YPVPPGHTADSYVEE-------KTWEGLLERLKCRSVIEIPPA--YKQRLEYELKMIQQM 343 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 FS YFL+V D+I++A+ + IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+ Sbjct: 344 GFSTYFLVVWDYIKYARDHEIPVGPGRGSAAGSLVAYALKITNIDPVHHGLLFERFLNPE 403 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R SMPD D DFC +RRDE+I+YV KYG VAQIITF L +KA L+DV R L +PYS+ Sbjct: 404 RKSMPDIDTDFCIERRDEMIKYVTEKYGERNVAQIITFNRLTSKAVLKDVARVLDIPYSE 463 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHAST 527 D++ KLIP P L+ + D F++ +DP V R ++++ ++EG + Sbjct: 464 SDKMAKLIPVSRGKPTKLKVMISDETPEPEFKQKYDSDPQVKRWVDMAIRIEGTNKTFGV 523 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAG+VI +PL ++VP+ ++ + +TQ+ M+ +E GL+K DFLGLK LT +QK+ + Sbjct: 524 HAAGVVISSQPLDEIVPLQKNNDGAV-ITQYFMEDLESLGLLKMDFLGLKNLTTIQKTAE 582 Query: 588 FL-AQRGVKVDLSLIPF------------------DDHETYHLLTTKGTL-GIFQLESSG 627 + + +D+ +P DD E H L +G L GIFQLESSG Sbjct: 583 LVKVNKNEIIDVDELPLHERKALEIIAKGELKKLPDDVEKTHKLLERGDLEGIFQLESSG 642 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 MRQ + ++P IEDI ++++LYRPGP+D ++ + +RK+GKE I H L++P+LKET Sbjct: 643 MRQIVRDLKPSGIEDISSILALYRPGPLDAGLIPKFIDRKHGKEPIKYEHQLLEPILKET 702 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 V++YQEQ+M++AQ L+GYSL EAD+LRRAMGKK EM K KE FI G++KNG+S+ I Sbjct: 703 YAVLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMKKHKEIFIDGSTKNGVSQEI 762 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 A N+F+ + KFA+Y +SY+T M Y Sbjct: 763 AENLFDQMVKFAEY-----------CLSYETQIMTVEY 789 >gi|298247514|ref|ZP_06971319.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963] gi|297550173|gb|EFH84039.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963] Length = 1173 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 337/1065 (31%), Positives = 571/1065 (53%), Gaps = 75/1065 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G + ++ + +AITD ++ ALEF + A I+P+ Sbjct: 7 FAHLHVHTEYSLLDGFSRIKTLVKQAKELGMKHLAITDHGAMYGALEFYKACKANDIRPV 66 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + + N+K +G+ + ++LL GY+ L+++++ R Sbjct: 67 LGVEAYLTEDMNVKAKKRGQRDYT---HLLLLAKNNTGYRNLMKMMTIANTEGMYANHAR 123 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I + + EG+I + G + + A+ + ++ + G Y+ +Q H Sbjct: 124 IDKNIFSQY-AEGIIATSSCLGGEVPQLLLEGKENEAKNIIRWYQDVLGRGNYYLEIQEH 182 Query: 190 RGYDRYR----ESQVVQLAYT-H---ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 G+++ + ++ ++ Y H ++P++ TN+ ++ + D AH+VL+ V + +S Sbjct: 183 HGHEKNGTPSPQDKLNKMLYGLHKELDVPMIVTNDLHYVQDTDAHAHEVLLCVQTGSTLS 242 Query: 242 QKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +R + Y L++ +M+ +F +L + L NTV +A +C + LP+ Sbjct: 243 DPNRFAFDSNEYFLRSPQQMLDLFPELHDGLLNTVRLAEQCEVDPLAYKAQLPKV----- 297 Query: 301 DDIQKE---EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 DI + + L + + G+ R G + +++LD+EL++I + F YF Sbjct: 298 -DIPPQYGTPDEFLYAQCLEGIRYRF-------GELTEPLKRQLDYELSIIVQKGFVPYF 349 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+VAD+++WA++ I RGS AGS+ A+ L IT++DPLR+ LLFERFLNP+R MPD Sbjct: 350 LVVADYVRWAREQGIRC-LARGSAAGSLVAFTLGITNVDPLRYQLLFERFLNPERDDMPD 408 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D+DF DRR+EVIRY+ KYGHE VAQ++TF S+ AK +++DV R++ D++ + Sbjct: 409 IDMDFPDDRREEVIRYLGEKYGHECVAQMVTFNSMAAKQSVKDVARSMGRQ-DLGDKISR 467 Query: 478 LIPNDPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P ++LQ +D R + D LL+++ KLEG R HAAG+++ + Sbjct: 468 LIPTGPK--ITLQGSLNDVRDLNDLYQHDGEAKDLLDMALKLEGSVRSTGVHAAGVLVAN 525 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595 PL VP+ + R TQ+ +E+ GLIK+D LGL LT+L ++ F+ + RG Sbjct: 526 EPLVNFVPLQK--REGRISTQYEHSHLEEIGLIKYDILGLSNLTILDNAVKFIKESRGED 583 Query: 596 VDLSLIPFDD----------HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 ++L +P D + Y LL T G+FQLES+ MR+ ++ ++P CIEDI A Sbjct: 584 INLEKLPLDPTGDPELDRKRQKAYELLAAGETTGVFQLESAKMREYIKMLKPTCIEDITA 643 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +V+LYRPGP+D+I + + K+G++K+ + P + L+E+ GVI+YQ+QV+ IA L+G+ Sbjct: 644 MVALYRPGPMDSIPDFVDAKHGRKKVTYLDPRLSQWLEESYGVIVYQDQVLLIAVNLAGF 703 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 S + + R+A+ KKI E++ K F+ G KNG+ + +A +FE + F YGFNK+H Sbjct: 704 SWGKVNKFRKALSKKIMHEVEGYKGDFLKGCVKNGVKQEVAETLFEQILPFGGYGFNKAH 763 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 AA+YAV+S+ TA++K +Y EF+AA+MT E + +KI + ++ ++++ P VN Sbjct: 764 AASYAVVSFYTAYLKANYTAEFMAATMTAEAADAKKIANAIAECKRMGVEVLGPDVNKSQ 823 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884 F + + I + L AIKG+G I+ A A+ PF SL DFC+RVD+ + + +E+ Sbjct: 824 KGFAIENGGIRFGLLAIKGIGDGPIDGIIRARAEGGPFKSLGDFCTRVDAHAVGKGAIET 883 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE--- 941 L+ GA+D S Q L ++++ Q+ + R+ A E+G S LE Sbjct: 884 LIKVGAMDSLMPSENQRHILLASVERAVQYGKSERS-------AKERGLVSLFGDLEEVG 936 Query: 942 ---KFSVENSSVR------FENEQRVLGFYFSGHPLDVYKPILRKMG----IKGYEESVA 988 +FS+ ++ E E+ ++G Y + HPL I + G I E + Sbjct: 937 GSLEFSLSTNAQEIPRKQLLEWERELIGVYIAKHPLAYLSDIFVERGATHTIGQVTEELD 996 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 T + + M+ ++ T+KG + V + FP Sbjct: 997 T---KKVTVGGMIKEARRITTKKGDDMCVVQLEDMYGTLGITIFP 1038 >gi|327330381|gb|EGE72130.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL097PA1] Length = 1190 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 332/1014 (32%), Positives = 530/1014 (52%), Gaps = 76/1014 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 6 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 I+PIIG + D D + ++ G+ + + Sbjct: 66 PLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 +EG L L S + + R+ + + + G+I TG SG + Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276 +E+ +AHD L+ V V KD P +Y+K+ +M ++F D PEA +NT+ Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295 Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 + +V + +P+F E + +E+ LR K GL+ + Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++ +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I Sbjct: 346 KEVLERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 I+PL LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++A Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505 KAA++D R L P++ D++ K +P D V L I D S FR+ + Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P V +++ ++ LEGL R HA ++ PL LVPM++ + + + F +E+ Sbjct: 526 PDVAKVVATAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ L ++ + + A RG+ VDL I DD TY +L TLG+FQL+ Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678 + MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 D +L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G + Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 +G S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K+ + D R +I ++PP VN ++F I + L AI+ VG I+ A Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRARE 885 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + P F +V N+R++ESL+ AGA D G+SR L+ +++ Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N+ N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999 >gi|315038186|ref|YP_004031754.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1112] gi|312276319|gb|ADQ58959.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1112] Length = 1035 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 339/1031 (32%), Positives = 537/1031 (52%), Gaps = 58/1031 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ + +++ A+ + D N + + F + A GI+P++G Sbjct: 6 LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-C 132 Q+ ++ G +++ T GY L+ L S + LL + Q+ +I Sbjct: 66 QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + F N Q+ L KK+ D Y+ + + Sbjct: 116 LKELTKYLEDLLVIIPANTRSELVYLFETNQ-QLGSDYLRDLKKIVPD-FYLGVYAAKNA 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD- 251 Y + V L+ +LPLVA +S +L D L A+ S Q P D Sbjct: 174 QDYLDY-VRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAI-RSGQKMQDMVPLAKQDG 231 Query: 252 -HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HY+ + +M+ + DL +A+ NT +IA +C+ + P+LP++ + + E Sbjct: 232 SHYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKF----PTSE 287 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L A GL+ R Q I +Y++RL++EL +I +M F YFLIV D I + Sbjct: 288 EYLHYLAQTGLQARFGQEKIPA-----EYQKRLNYELRIINQMGFDDYFLIVWDVINYCH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS GS+ +Y+L IT++DPL++ LLFERFLNP R MPD D+D RD Sbjct: 343 RVKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRD 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + +V++ + IP Sbjct: 403 TVIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWVRAIPFSKGKMTL 462 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 QA + R A L + LEGL RH S HAAG+VI D ++ + + Sbjct: 463 KQAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQAG 522 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 +PVTQ K++E GL+K DFLGL+ LT+L LD + +GVK+D + IP +D +T Sbjct: 523 PLG-IPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKT 581 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 L T IFQ ES G+R+ L + PD ED++A+ +LYRPGP+ NI + RKNGK Sbjct: 582 LELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGK 641 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E + P + +L+ T G+++YQEQVMQ AQ+L+ +SL EAD+LRRAM KK ++ ++++ Sbjct: 642 EPVRYPDPSLKQILQPTYGILVYQEQVMQTAQILARFSLGEADILRRAMSKKKQDVIEQE 701 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 K +FI+G KNG SK + ++ + +FA+YGFN+SHA AY I++ A++K HYP F Sbjct: 702 KSKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFY 761 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 A L K +++ A++ NI+++ P +N +++ + +N I L AIKG+ Sbjct: 762 TA--MLNSSTSAKAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVD 819 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 A+ I A+ KP+ SL DF R+DSK L +E+L+ AGA D +R +LL + +I Sbjct: 820 FAKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDI 877 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 Q +NI E D L+ + + + E E++VLGF + PL Sbjct: 878 IANVQLT-------GQNISLSE--ILGDA-PLKPAEIPTNGEKAEMEEKVLGFATTTTPL 927 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRL------AAMVVSKQQKKTRKGSRIGWVTFSE 1022 + ++ Y + + N + ++S ++ +T+ + + F++ Sbjct: 928 ---------VAVQKYAQKFNALPLNQFQFNESGIGVGKLMSLKRIRTKNDKTMAFAGFAD 978 Query: 1023 PAKEYEANFFP 1033 + + E FP Sbjct: 979 SSSQQEVIIFP 989 >gi|242373992|ref|ZP_04819566.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis M23864:W1] gi|242348346|gb|EES39948.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis M23864:W1] Length = 1069 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 337/1026 (32%), Positives = 539/1026 (52%), Gaps = 85/1026 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H++Y LL +L + ++++K + A+AITDT+ L+ +F AA I PI G Sbjct: 4 HLNIHTAYDLLNASLRIEDVINKAKNEGYTALAITDTHVLYGFPKFYDACIAADIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 L + G TV +L EG + L +L S + + K+ + Sbjct: 64 MTL---------ILTDGLYKVETV----VLAQNNEGLKALYQLSSAIKM----KEKEEVP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L WL+ +I+ S + FN +Y+N Sbjct: 107 LEWLKRYDDNLIIIFKDVESTHLQILEAFNDHT---------------HVYMNHTSDDII 151 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 DR + V ++ +L+ ED + L A+ ++ + + + +H Sbjct: 152 DRKK---------------VWLQSARYLNREDADTISALQAIRDNSKLDLINESKDFGEH 196 Query: 253 YLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 + +++E+ +I D+ E ++NT I C L H +LP+F+ + + KE Sbjct: 197 F-PDQNELKNISDDVDEEVIKNTQTIVDLCQAELVYHQSLLPQFVTPNGE-VAKEY---- 250 Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 L L H Y +RL E +I M F YFLIV+D I +AK ++ Sbjct: 251 -------LWSVLIDKLNEWNLHNDQYLERLKHEYEIITNMGFEDYFLIVSDLIHYAKTHD 303 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR++VI Sbjct: 304 VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 363 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491 +YVQ+KYG V+ I+TFG L A+A RDVGR + + ++ + KLIP+ ++L Sbjct: 364 QYVQDKYGDLHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLG--ITLDE 421 Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 F+ + + ++S+KLEGL RH STHAAGI+I D+PL + P+ + Sbjct: 422 AYQQDNFKAFVHRNHRNELWFDMSKKLEGLPRHTSTHAAGIIINDQPLYKFAPL--TLGD 479 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610 +TQ+ M E+ GL+K DFLGL+ L+++ + + + + + +D+ IPFDD + + Sbjct: 480 TGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVTQVKKDLNIDIDVETIPFDDRKVFK 539 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670 LL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ I Y R++ K Sbjct: 540 LLSQGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 599 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 + +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ Sbjct: 600 VEYLHPDLEPILKNTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLESERQ 659 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 F++GA NG + ++ IF+L+ KFADYGF ++HA +Y+ I+Y +++K +YP F A Sbjct: 660 HFVNGAKDNGYDEQMSKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNYFYAN 719 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850 ++ + + +K +A+ I I+PP++N +K IY SL IKGVG + Sbjct: 720 ILSNVIGSEKKTANMIDEAKHQKINILPPNINESHWFYKATSQGIYLSLGTIKGVGYQSV 779 Query: 851 RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + I+ E + F DF R+ + R++LE+L+ GA D F +R LLQ++D + Sbjct: 780 KLIVDERYNNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDNFDKNRATLLQAIDQVL 839 Query: 910 KYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 VE++ + +F K + DK L + N E+ LGFY S HP Sbjct: 840 DTTSDVEQD-----DMLFDILTPKQVYEDKEELPDKLLSNY------EKEYLGFYISKHP 888 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 ++ K +K + Y+ S A N + + +Q +T+ G + +VT ++ Sbjct: 889 VE--KEFEKKQYLGIYKLSNAQ---NFQPILVQFDTIKQIRTKNGQNMAFVTLNDGMTLM 943 Query: 1028 EANFFP 1033 + FP Sbjct: 944 DGVIFP 949 >gi|302525308|ref|ZP_07277650.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4] gi|302434203|gb|EFL06019.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4] Length = 1195 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 370/1082 (34%), Positives = 566/1082 (52%), Gaps = 73/1082 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA + + + A PA+ +TD N++ EF Q + GI+P Sbjct: 5 SFVHLHVHTEYSMLDGAAKIGPLFAEAARLGMPAVGMTDHGNMYGGDEFFQTSKKHGIKP 64 Query: 70 IIGCQLDIDMQDNL--------KMTNQGKTPFP---------TVPSIVLLVSTAEGYQRL 112 IIG + + + + + +G F + ++ A G + L Sbjct: 65 IIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGGGAYTHMTMVAGNATGLRNL 124 Query: 113 IELVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 +L S + QG + R+ + E EG+I TG SG + + A + Sbjct: 125 FKLSSLASI--QGYYRKPRMDRELIAE-NAEGIIATTGCPSGEVQTRLRLGQREAAIQAA 181 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 +K +FG Y+ L H +R ++++ +LP +ATN+S +++++ + H Sbjct: 182 SDYKDIFGAGNFYLELMDHGLPIERSVREGLLEIGKLLDLPPLATNDSHYVTKDQADTHS 241 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFS-DLPEALENTVEIARRCSFILQV 287 L+ V ++ R + D Y LK+ EM + ++P A +NT+ IA R V Sbjct: 242 ALLCVQAGKTLNDPTRFKFDGDGYFLKSAQEMREYWDKEVPGAADNTLLIAERVESYEDV 301 Query: 288 --HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H +P F E E LR++ GL+ R G I GY +R D+EL Sbjct: 302 YAHKDRMPVFDVPEG----HTEATWLRHQVAEGLKWRFPDG-IPDGYE-----ERCDYEL 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 NVI F YFLIVAD IQ A++ I VGPGRGS AG++ AYAL IT++DP+ LLFE Sbjct: 352 NVIEGKGFPAYFLIVADLIQHAREVGILVGPGRGSAAGALVAYALGITNLDPIPQKLLFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+RMSMPD DIDF RR E+IRY +KYG +RVAQ+ITFG+++ KAA++D R Sbjct: 412 RFLNPERMSMPDIDIDFDDRRRGEMIRYATDKYGADRVAQVITFGTIKTKAAIKDSARVH 471 Query: 466 --QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLEI 514 Q YS D++ K +P A + L I D R A A D + E Sbjct: 472 FGQPGYSIADKISKALPPPIMAKDIPLSGIVDSKHERYAEAAEVRTLVETDEECKTIFET 531 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEGL R+A HA +++ PL+ +P+++ + +T ++ E GL+K DFL Sbjct: 532 ARGLEGLIRNAGVHACAVIMSSEPLTDAIPVWQRDDGSI-ITGWDYPSCEAIGLLKMDFL 590 Query: 575 GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ +L+ + A RG ++DL + FDD E Y LL TLG+FQL+ MR L Sbjct: 591 GLRNLTVIGDALENIKANRGEEIDLDRLGFDDPEAYKLLGRGDTLGVFQLDGGAMRDLLR 650 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQG 687 M P EDIIA+++LYRPGP+ Y +RKN +++I IHP L +P+ L ET G Sbjct: 651 RMLPTGFEDIIAVLALYRPGPMGMNAHNDYADRKNNRQQIKPIHPQLEEPLREILSETYG 710 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS-----KNGIS 742 +I+YQEQ+MQIAQ ++GY++ AD LRRAMGKK KE ++K+ E F G + G S Sbjct: 711 LIVYQEQIMQIAQKVAGYTMGRADTLRRAMGKKKKEVLEKEYEGFEEGMKSSPLVEGGFS 770 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++ + FA Y FNKSHAAAY +I+Y TA++K +Y E++AA +T DN +K Sbjct: 771 PEAVKALWDTILPFAGYAFNKSHAAAYGLIAYWTAYLKANYTAEYMAALLTSVGDNKDKS 830 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861 + + R+ I+++PP VN + F N I + L A++ VG I++ +K Sbjct: 831 AIYLSECRRLGIKVLPPDVNESALRFAAVGNDIRFGLGAVRNVGANVVESIIKTREEKGK 890 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + S DF + + N+RV+ESL+ AGA D G++R+ ++Q ++ + +++ Sbjct: 891 YSSFTDFLDKSELVACNKRVIESLIKAGAFDSMGHTRLSMIQVHEDAVEAVVPLKRQEAM 950 Query: 922 KHENIF--------AHEKGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVY 971 ++F A E S + KF E + E+ +LG Y S HPLD Sbjct: 951 GQFDLFGSFGGGDDAAEAAPSSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLDGA 1010 Query: 972 KPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 + ILRK K +A + + ++ ++ S +++ +KG T + E Sbjct: 1011 ERILRKHAPKPIAALLADPPKEGEVVISGLLTSLERRVNKKGEPWAICTVEDMDAAIEVL 1070 Query: 1031 FF 1032 FF Sbjct: 1071 FF 1072 >gi|50842630|ref|YP_055857.1| DNA polymerase III subunit alpha [Propionibacterium acnes KPA171202] gi|50840232|gb|AAT82899.1| DNA polymerase III alpha subunit [Propionibacterium acnes KPA171202] Length = 1220 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 330/1014 (32%), Positives = 530/1014 (52%), Gaps = 76/1014 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 36 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 95 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 ++PIIG + D D + ++ G+ + + Sbjct: 96 PLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 150 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 +EG L L S + + R+ + + G+I TG SG + Sbjct: 151 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-PGGIIASTGCPSGEVQTRLRLG 208 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 209 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 268 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276 +E+ +AHD L+ V V KD P +Y+K+ +M ++F D PEA +NT+ Sbjct: 269 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 325 Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 + +V + +P+F E + +E+ LR K GL+ + Sbjct: 326 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 375 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++ +RL+ EL+VI + F+ YFL+V+D A+ +PVGPGRGS AGS+ AY I Sbjct: 376 KEVLERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 435 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 I+PL LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++A Sbjct: 436 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 495 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505 KAA++D R L P++ D++ K +P D V L I D S FR+ + Sbjct: 496 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 555 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P V +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ Sbjct: 556 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 615 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ L ++ + + A RG+ VDL I DD TY +L TLG+FQL+ Sbjct: 616 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 675 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678 + MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + Sbjct: 676 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 735 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 D +L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G + Sbjct: 736 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 795 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 +G S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ Sbjct: 796 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 855 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K+ + D R +I ++PP VN ++F I + L A++ VG I+ A Sbjct: 856 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRARE 915 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + P F +V N+R++ESL+ AGA D G+SR L+ +++ Sbjct: 916 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 975 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N+ N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 976 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 1029 >gi|315092840|gb|EFT64816.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL060PA1] Length = 1190 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 330/1014 (32%), Positives = 530/1014 (52%), Gaps = 76/1014 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 6 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 ++PIIG + D D + ++ G+ + + Sbjct: 66 PLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 +EG L L S + + R+ + + G+I TG SG + Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-PGGIIASTGCPSGEVQTRLRLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276 +E+ +AHD L+ V V KD P +Y+K+ +M ++F D PEA +NT+ Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295 Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 + +V + +P+F E + +E+ LR K GL+ + Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++ +RL+ EL+VI + F+ YFL+V+D A+ +PVGPGRGS AGS+ AY I Sbjct: 346 KEVLERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 I+PL LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++A Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505 KAA++D R L P++ D++ K +P D V L I D S FR+ + Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P V +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ L ++ + + A RG+ VDL I DD TY +L TLG+FQL+ Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678 + MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 D +L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G + Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 +G S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K+ + D R +I ++PP VN ++F I + L A++ VG I+ A Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRARE 885 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + P F +V N+R++ESL+ AGA D G+SR L+ +++ Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N+ N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999 >gi|314923593|gb|EFS87424.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL001PA1] gi|314966638|gb|EFT10737.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL082PA2] gi|314981367|gb|EFT25461.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA3] gi|315092033|gb|EFT64009.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA4] gi|315103640|gb|EFT75616.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA2] gi|315105689|gb|EFT77665.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL030PA1] gi|327327462|gb|EGE69238.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL103PA1] Length = 1190 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 330/1014 (32%), Positives = 530/1014 (52%), Gaps = 76/1014 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 6 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 ++PIIG + D D + ++ G+ + + Sbjct: 66 PLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 +EG L L S + + R+ + + G+I TG SG + Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-PGGIIASTGCPSGEVQTRLRLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVE 276 +E+ +AHD L+ V V KD P +Y+K+ +M ++F D PEA +NT+ Sbjct: 239 TEDQADAHDSLLCVG---VGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLL 295 Query: 277 IARRCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 + +V + +P+F E + +E+ LR K GL+ + Sbjct: 296 LTEMIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------P 345 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 ++ +RL+ EL+VI + F+ YFL+V+D A+ +PVGPGRGS AGS+ AY I Sbjct: 346 KEVLERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIA 405 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 I+PL LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++A Sbjct: 406 INPLEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKA 465 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLAD 505 KAA++D R L P++ D++ K +P D V L I D S FR+ + Sbjct: 466 KAAVKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADN 525 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P V +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ Sbjct: 526 PDVAKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEE 585 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ L ++ + + A RG+ VDL I DD TY +L TLG+FQL+ Sbjct: 586 MGLMKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLD 645 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----I 678 + MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + Sbjct: 646 GTAMRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDL 705 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 D +L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G + Sbjct: 706 DEILAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMRE 765 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 +G S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ Sbjct: 766 HGYSDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDD 825 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K+ + D R +I ++PP VN ++F I + L A++ VG I+ A Sbjct: 826 KDKMAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRARE 885 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + P F +V N+R++ESL+ AGA D G+SR L+ +++ Sbjct: 886 ENGPAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKR 945 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N+ N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 946 NQANGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999 >gi|300784068|ref|YP_003764359.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32] gi|299793582|gb|ADJ43957.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32] Length = 1195 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 361/1084 (33%), Positives = 569/1084 (52%), Gaps = 77/1084 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA + + + A PA+ +TD N++ EF Q++ G++P Sbjct: 5 SFVHLHVHTEYSMLDGAAKIAPLFAEAARLGMPAVGMTDHGNMYGGDEFYQQSKKHGLKP 64 Query: 70 IIGCQLDID------------MQDNLKMTNQ-GK----TPFPTVPSIVLLVSTAEGYQRL 112 IIG + I Q N + +++ G+ + + +L A G + L Sbjct: 65 IIGIEAYIAPESRFHKKPVFWGQSNQRGSDELGEGGDVSGAGAYTHMTMLAQNATGLRNL 124 Query: 113 IELVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 +L S + QG + R+ + E G+I TG SG + + A + Sbjct: 125 FKLSSLASM--QGYYRKPRMDRELIAE-NHSGIIATTGCPSGEVQTRLRLGQKEAAIQAA 181 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 +K +FG D ++ L H +R ++++ +L +ATN+S +++++ + H Sbjct: 182 SDYKDIFGADNFFLELMDHGLPIERSVREGLLEVGRLLDLKPIATNDSHYVTKDQADTHS 241 Query: 230 VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQV 287 L+ V ++ R + D +YLK+ +EM + ++P A + T+ IA R V Sbjct: 242 ALLCVQAGKTLNDPTRFKFDGDGYYLKSAAEMREYWDKEVPGAADTTLMIAERVESYEDV 301 Query: 288 --HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H LP F E D + LR + GL+ R G + Y Y +R++ EL Sbjct: 302 YSHKDRLPFFEVPEGYD----QGGWLREEVQRGLKWRFPDG-VPDEY----YNERIEIEL 352 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI F YFLIVAD I +A+K I VGPGRGS AGS+ AY L IT++DP+ LLFE Sbjct: 353 DVIIGKGFPAYFLIVADLISYARKVGIRVGPGRGSAAGSLVAYVLGITNLDPIPQKLLFE 412 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPD DIDF RR E+IRY +KYG ++VAQ+ITFG+++ KAA++D R Sbjct: 413 RFLNPERVSMPDIDIDFDDRRRGEMIRYATDKYGSDKVAQVITFGTIKTKAAIKDSARVH 472 Query: 466 --QMPYSQVDRLCKLIPND-PAHPVSLQAIADDSRFREARLA--------DPSVDRLLEI 514 Q Y+ D++ K +P A + L I D+ R A D + E Sbjct: 473 FGQPGYAIADKISKALPPPIMAKDIPLSGIVDNKHERYGEAAEVRALVETDDECKTIFET 532 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEGL R+A HA +++ PL+ +P+++ + +T ++ E GL+K DFL Sbjct: 533 ARGLEGLIRNAGVHACAVIMSCDPLTDAIPLWQRDDGSI-ITGWDYPSCEAIGLLKMDFL 591 Query: 575 GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ ++D + A RGV VDL + DD ETY LL TLG+FQL+ MR L Sbjct: 592 GLRNLTVIGDAIDNIKANRGVDVDLDTLGVDDPETYKLLARGDTLGVFQLDGGPMRDLLR 651 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE----TQG 687 M+P +DI+A+ +LYRPGP+ Y +RKN ++K+ IHP +D L+E T G Sbjct: 652 RMEPTVFDDIVAVGALYRPGPMGMNAHNDYADRKNNRQKVKPIHPELDEPLREILADTYG 711 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN-----GIS 742 +I+YQEQ+M I Q ++GY++ ADVLRRAMGKK KE +DK+ E F +G + G S Sbjct: 712 LIVYQEQIMHIGQKVAGYTMGRADVLRRAMGKKKKEVLDKEYEGFEAGMRASDLRPGGFS 771 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++ + FA Y FNKSHAAAY +ISY TA++K ++ E++AA +T DN +K Sbjct: 772 PEAIKALWDTILPFAGYAFNKSHAAAYGLISYWTAYLKANFRAEYMAALLTSVGDNKDKS 831 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861 + + R+ I+++PP VN + F + I + L A++ VG I++ +K Sbjct: 832 AVYLSECRRLGIKVLPPDVNESALRFAAVGDDIRFGLGAVRNVGANVVESIIKTREEKGK 891 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + S DF + + N+RV+ESL+ AG D G++R+ ++Q ++ + +++ Sbjct: 892 YASFTDFLDKSELVACNKRVIESLIKAGGFDSLGHTRLSMIQVHEDAVEAVVPLKRQEAM 951 Query: 922 KHENIFA-----HEKGTFSDKITLEKFSVENSSVR--FENEQRVLGFYFSGHPLDVYKPI 974 ++F E S + KF E + E+ +LG Y S HPLD + I Sbjct: 952 GQFDLFGFGGDEGEAAPSSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLDGAERI 1011 Query: 975 LRKMGIKGYEESVATI-----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 LRK K +A+I + + ++ ++ S +++ +KG T + E Sbjct: 1012 LRKHAPK----PIASILNDPPKEGELVISGLITSLERRVNKKGEPWAICTVEDMDASLEV 1067 Query: 1030 NFFP 1033 FFP Sbjct: 1068 LFFP 1071 >gi|282853897|ref|ZP_06263234.1| DNA polymerase III subunit alpha [Propionibacterium acnes J139] gi|282583350|gb|EFB88730.1| DNA polymerase III subunit alpha [Propionibacterium acnes J139] Length = 1190 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 328/1011 (32%), Positives = 529/1011 (52%), Gaps = 70/1011 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 6 FVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGDQN 65 Query: 67 --IQPIIGCQL----------------------DIDMQDNLKMTNQGKTPFPTVPSIVLL 102 ++PIIG + D D + ++ G+ + + Sbjct: 66 PLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGR-----YTHMTMW 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 +EG L L S + + R+ + + G+I TG SG + Sbjct: 121 AKDSEGLHNLFRL-SSLASYEGYYMKPRMDRELMGQY-PGGIIASTGCPSGEVQTRLRLG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFL 220 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S ++ Sbjct: 179 QFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 239 TEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLTE 298 Query: 280 RCSFILQVHAPI--LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337 +V + +P+F E + +E+ LR K GL+ + ++ Sbjct: 299 MIGSYDEVFKYVDRMPQFDVPEGE----TQESWLRKKLQEGLDEKFGPNP------PKEV 348 Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397 +RL+ EL+VI + F+ YFL+V+D A+ +PVGPGRGS AGS+ AY I I+P Sbjct: 349 LERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINP 408 Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457 L LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA Sbjct: 409 LEHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAA 468 Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSR--------FREARLADPSV 508 ++D R L P++ D++ K +P D V L I D S FR+ +P V Sbjct: 469 VKDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDV 528 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL Sbjct: 529 AKVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGL 588 Query: 569 IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 +K DFLGL+ L ++ + + A RG+ VDL I DD TY +L TLG+FQL+ + Sbjct: 589 MKMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTA 648 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPM 681 MR L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP +D + Sbjct: 649 MRSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEI 708 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G Sbjct: 709 LAPTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGY 768 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K Sbjct: 769 SDDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDK 828 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860 + + D R +I ++PP VN ++F I + L A++ VG I+ A + Sbjct: 829 MAMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENG 888 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 P F +V N+R++ESL+ AGA D G+SR L+ +++N+ Sbjct: 889 PAPDFFTFLDQVSLTVCNKRLIESLIKAGAFDFMGHSRRGLMAVYGQAVDAVIDIKRNQA 948 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENS---SVRFENEQRVLGFYFSGHPL 968 N +++F + ++ +E+ ++ S + E+ +LG Y S HPL Sbjct: 949 NGQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPL 999 >gi|145224220|ref|YP_001134898.1| DNA polymerase III subunit alpha [Mycobacterium gilvum PYR-GCK] gi|315444554|ref|YP_004077433.1| DNA polymerase III subunit alpha [Mycobacterium sp. Spyr1] gi|145216706|gb|ABP46110.1| DNA polymerase III, alpha subunit [Mycobacterium gilvum PYR-GCK] gi|315262857|gb|ADT99598.1| DNA polymerase III, alpha subunit [Mycobacterium sp. Spyr1] Length = 1183 Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust. Identities = 346/1007 (34%), Positives = 543/1007 (53%), Gaps = 58/1007 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL H+ YS+L+GA + +L + + PAI +TD N+F A EF A AGI Sbjct: 2 SGSFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGI 61 Query: 68 QPIIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + I + + + + + + ++ A G + L +L S Sbjct: 62 KPIIGIEAYIAPASRFDTKRVLWGDPGQKSDDVSGSGSYTHMTMVAENATGLRNLFKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Q + R+ + E EG+I TG SG + + A + ++++ Sbjct: 122 LASFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREI 180 Query: 178 FG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 FG + ++ L H G D R RE ++++ +P +ATN+ +++ + + H+ L+ Sbjct: 181 FGPENFFLELMDH-GLDIERRVREG-LLEIGQKLGIPPLATNDCHYVTRDASQNHEALLC 238 Query: 234 VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI 291 + +S +R + D +YLK+ +EM +++ +P A ++T+ IA R V AP Sbjct: 239 IQTGKTLSDPNRFKFDGDGYYLKSAAEMRALWDGQVPGACDSTLLIAERVQPYTDVWAPK 298 Query: 292 --LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P F E D + + L ++ +AGLE R + A A G +Y +R D+E+ VI Sbjct: 299 DRMPVFPVPEGHD----QGSWLTHEVMAGLERRFS--AAAGGQVPPEYIERADYEIKVIC 352 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 F YFLIVAD I +AK I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLN Sbjct: 353 DKGFPAYFLIVADLINYAKSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLN 412 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467 P+R S PD DIDF RR E++RY NK+G +RVAQ+ITFG+++ KAAL+D R Q Sbjct: 413 PERPSAPDIDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQP 472 Query: 468 PYSQVDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQKL 518 ++ DR+ K +P A + + I D + R++EA DP V + E ++ L Sbjct: 473 GFAIADRITKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGL 532 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R+A HA +++ PL +P+++ + +T ++ E GL+K DFLGL+ Sbjct: 533 EGLVRNAGVHACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRN 592 Query: 579 LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ ++ + A RGV VDL + DD + Y LL TLG+FQL+ S MR L MQP Sbjct: 593 LTIIGDCIENIKANRGVDVDLESLALDDPKAYELLGRGDTLGVFQLDGSAMRDLLRRMQP 652 Query: 638 DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691 DI+A+++LYRPGP+ Y +RKNG++ I IHP ++ LK ET G+I+Y Sbjct: 653 TEFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVY 712 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQ+M IAQ ++ YS+ +AD LR+AMGKK E ++ + + F G + NG S+ +++ Sbjct: 713 QEQIMFIAQKVASYSMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWD 772 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + FA Y FNKSHAA Y ++SY TA++K +Y E++A +T D+ +K + D R+ Sbjct: 773 TILPFAGYAFNKSHAAGYGLVSYWTAYLKANYQAEYMAGLLTSVGDDKDKAAIYLADCRR 832 Query: 812 FNIQIMPPSVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869 I ++PP VN +F VGD+ I + L A++ VG ++ +K + D+ Sbjct: 833 LGITVLPPDVNESVQNFASVGDD-IRFGLGAVRNVGANVVASLVSTREEKGKYTDFSDYL 891 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-- 927 +++D ++V ESL+ AGA D G+ R L + +K ++F Sbjct: 892 NKIDITACTKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG 951 Query: 928 -----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 F+ K+ E++ ++ + E+ +LG Y SGHPL+ Sbjct: 952 GDDDGDTGDSAFTIKVPDEEWEDKH---KLALEREMLGLYVSGHPLN 995 >gi|120403761|ref|YP_953590.1| DNA polymerase III subunit alpha [Mycobacterium vanbaalenii PYR-1] gi|119956579|gb|ABM13584.1| DNA polymerase III, alpha subunit [Mycobacterium vanbaalenii PYR-1] Length = 1182 Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust. Identities = 345/1006 (34%), Positives = 539/1006 (53%), Gaps = 57/1006 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL H+ YS+L+GA + +L + + PAI +TD N+F A EF A AGI Sbjct: 2 SGSFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGI 61 Query: 68 QPIIGCQLDID----------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + I + + + + + + ++ A G + L +L S Sbjct: 62 KPIIGIEAYIAPASRFETKRVLWGDPSQKSDDVSGGGSYTHMTMVAENATGLRNLFKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Q + R+ + E EG+I TG SG + + A + ++++ Sbjct: 122 LASFEGQLGKWARMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREI 180 Query: 178 FG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 FG + ++ L H G D R RE ++ + +P +ATN+ +++ + + H+ L+ Sbjct: 181 FGPENFFLELMDH-GLDIERRVREG-LLDIGQKLGIPPLATNDCHYVTRDAAQNHEALLC 238 Query: 234 VAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPI 291 + +S +R + D Y LK+ +EM +++ +P A ++T+ IA R V P Sbjct: 239 IQTGKTLSDPNRFKFDGDGYFLKSAAEMRALWDGQVPGACDSTLLIAERVQSYADVWTPK 298 Query: 292 --LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P F E D + + L ++ + GL+ R GA Q+Y R +E+ VI Sbjct: 299 DRMPIFPVPEGHD----QGSWLTHEVMTGLQERRFHGAPVP----QEYIDRAQYEIKVIC 350 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 F YFLIVAD I +A+ I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLN Sbjct: 351 DKGFPAYFLIVADLINYARSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLN 410 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467 P+R S PD DIDF RR E++RY NK+G +RVAQ+ITFG+++ KAAL+D R Q Sbjct: 411 PERPSAPDIDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQP 470 Query: 468 PYSQVDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQKL 518 ++ DR+ K +P A + + I D + R++EA DP V + E ++ L Sbjct: 471 GFAIADRITKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGL 530 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R+A HA +++ PL +P+++ + +T ++ E GL+K DFLGL+ Sbjct: 531 EGLVRNAGVHACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRN 590 Query: 579 LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ ++ + A RG+ VDL + DD + Y LL TLG+FQL+ MR L MQP Sbjct: 591 LTIIGDCIENIKANRGIDVDLESLTLDDPKAYELLGRGDTLGVFQLDGGPMRDLLRRMQP 650 Query: 638 DCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQGVIIY 691 DI+A+++LYRPGP+ Y +RKNG++ I IHP L +P+ L ET G+I+Y Sbjct: 651 TEFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQAIKPIHPELEEPLKDILSETYGLIVY 710 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQ+M IAQ ++ YS+ +AD LR+AMGKK E ++ + + F G + NG S+ +++ Sbjct: 711 QEQIMFIAQKVASYSMGKADALRKAMGKKKLEVLEAEYQGFKEGMTANGFSEKAVKALWD 770 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ Sbjct: 771 TILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRR 830 Query: 812 FNIQIMPPSVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869 I ++PP VN +F VGD+ I + L A++ VG ++ +K F D+ Sbjct: 831 LGITVLPPDVNESVQNFASVGDD-IRFGLGAVRNVGANVVSSLVATRKEKGKFADFSDYL 889 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +++D N++V ESLV AGA D G+ R L + +K ++F Sbjct: 890 NKIDIAACNKKVTESLVKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGG 949 Query: 930 EKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLD 969 G+ +D F+++ +E+ E+ +LG Y SGHPL+ Sbjct: 950 ADGSGADAGD-SAFTIKVPDEEWEDKHKLALEREMLGLYVSGHPLN 994 >gi|284928809|ref|YP_003421331.1| DNA-directed DNA polymerase III PolC [cyanobacterium UCYN-A] gi|284809268|gb|ADB94973.1| DNA-directed DNA polymerase III PolC [cyanobacterium UCYN-A] Length = 873 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 312/815 (38%), Positives = 479/815 (58%), Gaps = 70/815 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L VHS+YSLL+GA L+ ++D+ PAIA+TD ++ A+E + I+P Sbjct: 2 SFVGLHVHSAYSLLDGASQLDALVDRAIQLGMPAIALTDHGVMYGAIELIKVCKNKNIKP 61 Query: 70 IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123 IIG ++ DI + K +Q V+L +GY+ L +L + +L Sbjct: 62 IIGNEMYVINGDITEKKRYKKYHQ-----------VVLAKNTQGYKNLSKLTTISHLEGV 110 Query: 124 QGKQSV-RICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 QGK R C++ L E +GLI+ + G I + Q A++ +KK+F + Sbjct: 111 QGKGIFSRPCINKELLEKYHDGLIVTSACLGGEIPQKILSGDFQGAKEVAQWYKKIFAND 170 Query: 182 LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ +Q H DR + ++A + ++ATN+S F S D EAHD L+ + + ++ Sbjct: 171 FYLEIQDHGSTEDRIVNVSISKIAQDLNIKIIATNDSHFTSCYDVEAHDALLCIQTAKLI 230 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPR 294 S + R R + YLK+ EM +F D + EA+ NT+E+A + + P +P Sbjct: 231 SDEKRLRYSGTEYLKSIDEMKLLFRDHLDDDLIKEAINNTLEVANKIDTYHILGEPRIPD 290 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F D+ ++ +R ++ GL RL +I + +++Y+QRL++EL+++ +M FS Sbjct: 291 FPVPIGHDL----DSYVREISLQGLLERLNCKSINQV--SEEYQQRLEYELDMLEKMGFS 344 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFL+V D+I++A+ N IPVGPGRGS AGS+ AY+L IT+IDP+ LLFERFLNP+R S Sbjct: 345 SYFLVVWDYIKYARDNEIPVGPGRGSAAGSLVAYSLKITNIDPIYHGLLFERFLNPERKS 404 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD D DFC +RRDE+I+YV KYG + VAQIITF + +KA L+DV R L +PYS+ D+ Sbjct: 405 MPDVDTDFCIERRDEMIKYVTKKYGEKNVAQIITFNRMTSKAVLKDVARVLDIPYSESDK 464 Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 + K+IP P L+ + + F++ DP V R L+++ ++EG + HAA Sbjct: 465 MTKMIPVTRGKPTKLKVMVSNETPSPEFKDRYDQDPLVRRWLDMAIRIEGTNKTFGVHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI L ++VP+ ++ +TQ+ M+ +E GL+K DFLGL+ LT +Q++ D + Sbjct: 525 GVVISSESLDEIVPLQKN-NDGAVITQYYMEDLESLGLLKMDFLGLRNLTTIQRAADLIE 583 Query: 591 Q-RGVKVDLSLIPFD------------------DHETYHLLTTKGTL-GIFQLESSGMRQ 630 + R +K+D+ +P D D E H L G L GIFQLESSGM+Q Sbjct: 584 KNRNIKLDVEQLPTDERKALKELEQGKISKLPTDIEKTHKLLGDGELEGIFQLESSGMKQ 643 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGV 688 ++ ++P IEDI ++++LYRPGP+D ++ + NRK+GKE I L++P+LKET V Sbjct: 644 IVKDLKPSGIEDISSILALYRPGPLDAGLIPKFINRKHGKEAIKYEDKLLEPILKETYAV 703 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 ++YQEQ+M +AQ L+GYSL EAD+LRRAMGKK EM+K ++ FI G+ NG+S+++A N Sbjct: 704 LVYQEQIMTMAQQLAGYSLGEADLLRRAMGKKKASEMEKHQKNFIDGSLNNGVSRSVAEN 763 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +F+ + KFA+Y +SY T + Y Sbjct: 764 LFQQMVKFAEY-----------CLSYDTKVLTVEY 787 >gi|295426301|ref|ZP_06818961.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus amylolyticus DSM 11664] gi|295064040|gb|EFG54988.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus amylolyticus DSM 11664] Length = 1040 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 336/1028 (32%), Positives = 545/1028 (53%), Gaps = 47/1028 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ S++SLLE + ++L A+A+TD N + + F + A GI+ ++G Sbjct: 6 LQNLSAFSLLESPTRVKDLLTTAKKRNYGAVALTDINVTYGLVNFFELAKEVGIKALLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132 Q+ I+ G + ++ + + GY L+ L S + LL D G + + Sbjct: 66 QIRIN----------GLIDPTSKYDLIAIAKSNAGYHNLLRLSSAINLLTDNGNNNKILT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190 L L + E +I++ + + Q+ + K++ +LY+ + + Sbjct: 116 LKELTKYLDEMVIIVPANQHSEL-VMLSQRNDQLGADFVRELKEIVPATSQLYLGVYASK 174 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RV 248 + Y + + LA LPLVAT + +L+ +D+ L A+ + Q P + Sbjct: 175 NQNNYIDY-IQSLAKQFALPLVATEDCQYLNPQDHFLRKTLQAIKQGDKL-QDIVPLSKQ 232 Query: 249 TPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T HYL E+ S + D L +AL NT +IA C+ + P+LP++ + D Sbjct: 233 TGSHYLAEGEELFSRYHDFYLDQALNNTWKIAEECNAEVIFQKPVLPKYHQ---DKFASS 289 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 +E L A GL+ R + + Y ++RL +EL+VI RM F YFLIV D I + Sbjct: 290 KE-YLLYLAQNGLKARFKGKNVPEAY-----QKRLRYELDVINRMGFDDYFLIVWDVINY 343 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 + I GPGRGS GS+ +YAL IT++DPL + LLFERFLNP R MPD D+D R Sbjct: 344 CHRVGITTGPGRGSACGSLVSYALRITEVDPLEYHLLFERFLNPARHEMPDIDLDIPDIR 403 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD+VI+Y+ KYG + AQI+TFG+L AK ALRD GR + ++++ +P Sbjct: 404 RDDVIKYMYRKYGMDHAAQILTFGTLAAKQALRDTGRVFGLSVVELNKWADAVPYSKGK- 462 Query: 487 VSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L +SR + S ++LL + ++ LEGL RH S HAAG+VI D ++ + + Sbjct: 463 ITLNEAYQESRQTRLIVDSTSENKLLFQTARALEGLPRHYSIHAAGLVISDNSIASISGL 522 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 + + +PVTQ K++E GL+K DFLGL+ LT+L +L + +G+ +D + IP +D Sbjct: 523 -QAGQLGIPVTQQTKKYVESLGLLKIDFLGLRNLTILGNTLALIKSQGINIDPNKIPLND 581 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T +FQ ES G+R+ L + PD ED++A+ +LYRPGP+ NI + RK Sbjct: 582 AKTLELFRTGKTDAVFQFESEGIRKVLRKLSPDNFEDLVAVNALYRPGPMQNIDTFIARK 641 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G++ IV P + +L T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK + + Sbjct: 642 KGEQAIVYPDPSLKQILAPTYGILVYQEQVMQTAQILAGFSLGEADLLRRAMSKKNQALI 701 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++K +FI G + G SK + +++ + +FA+YGFN+SHA AY I+Y A++K HYP Sbjct: 702 GQEKAKFIEGTIQKGHSKQVGERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPA 761 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F A + + K + + A++ I+I+PP +N +DFK+ +I L AIKG+ Sbjct: 762 AFYTALLNSSGASKLKAQNYIMQAQEAGIRILPPDINQSGLDFKLLKGQILVGLKAIKGL 821 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + I++ KP SL+DF +++ K L + +L+ AG D +R +LL + Sbjct: 822 RNDFTKSIVQLK--KPIKSLDDFLRKIELKYLQLDPIRALIMAGCFDHLNDNRNELLVNC 879 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + + Q +N + ++K + SS R + E++VLGF + Sbjct: 880 KEMIENVQLTGQNLS----------LSELLGDAPIKKAAAPTSSQRADMEEKVLGFSTTT 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PL V + +K K + I N++ + ++ K +T+KG + + +F++ + Sbjct: 930 TPLIVVQKYAQKFNAKALNQ--VDINENSVCVGKLMKLK-LIRTKKGQTMAFASFADSSS 986 Query: 1026 EYEANFFP 1033 + E FP Sbjct: 987 QQEVTIFP 994 >gi|256850997|ref|ZP_05556386.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 27-2-CHN] gi|260661209|ref|ZP_05862123.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 115-3-CHN] gi|256616059|gb|EEU21247.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 27-2-CHN] gi|260548146|gb|EEX24122.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 115-3-CHN] Length = 1039 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 330/1033 (31%), Positives = 552/1033 (53%), Gaps = 58/1033 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS+SLL+ + +++++ ++A+TD N + ++F A A ++P++G Sbjct: 6 LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAQKANLKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132 + ++ + +Q ++ + +GY+ ++ L S + L D G + + Sbjct: 66 TIRLN-----GIVDQAHRY-----DLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ--R 188 L L + ++ + ++ + + R N+ ++ + +K+ LY+ + + Sbjct: 116 LKQLAKYLSDQVFIVPANITSEL-RYLAENNEKLGSDFIRELQKIIPSSSDLYLGVYAGK 174 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247 ++ Y Y +S Q LPL AT + +L D+ L A+ +V Sbjct: 175 NQPYIDYAKSMAKQF----NLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLAL 230 Query: 248 VTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 HYL+ E+VS +++ + AL N +IA C + P LP++ + D +K Sbjct: 231 QKGSHYLRTSGELVSAYNECGILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKK 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVA 361 LR +L Q +A+ ++ Q Y++RLD+EL +I +M F YFLIV Sbjct: 291 Y----LR---------QLVQKGLARRFNGQTIPEIYQKRLDYELKIIDQMGFDDYFLIVW 337 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D I +A +I GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R MPD D+D Sbjct: 338 DVINYAHSVDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLD 397 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RRDE+I+Y+ KYG + AQI+TFG+L AK ALRD R + Q + IP Sbjct: 398 IPDNRRDEIIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPF 457 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540 + ++L +S+ + + +++LL + + +LEG+ RHAS HAAG+VI D+ ++ Sbjct: 458 SKSK-ITLAQAYQESKALQLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIA 516 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 Q+ + +PVTQ +E+ GL+K DFLGL+ LT+L +++ LA+ G+K+D Sbjct: 517 QIAGLQAGTLG-IPVTQQTKAHVEELGLLKIDFLGLRNLTILGDTVELLAKDGIKLDPKR 575 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +T L T +FQ ES G++ L + PD ED++A+ +LYRPGPI NI Sbjct: 576 IPLDDVKTLQLFQRGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDH 635 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + NRK GKE I + +L+ T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK Sbjct: 636 FINRKQGKEPITYPDSSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKK 695 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++ +D+++E+FI+GA KNG + A ++ + +FA+YGFN+SHA AY+ I++ A++K Sbjct: 696 KQDLIDQEREKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLK 755 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYP F A + N K ++ A++ ++I+ P +N D+ + + +I L Sbjct: 756 VHYPAAFFTALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLK 815 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKG+ R+I A K F SL DF ++D K L+ + + +++ AG D +R Sbjct: 816 AIKGLRVDFLRNI--AGLPKNFTSLADFLRKIDVKFLSEQAIAAMIKAGCFDKIDENRKM 873 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 LL + I + ++ +N T + G I LE+ NS+ + E+ VLG Sbjct: 874 LLANCKEIVENIKFTGQNET------LSEGLGG----IRLEQAPAPNSNEKATMEEEVLG 923 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 F + P+ V + + + T+ I + ++ K +T+KG + + TF Sbjct: 924 FSTTKTPILVVQKYAERFNAQALNS--FTVNETGIAVGKLIKLK-LIRTKKGDTMAFSTF 980 Query: 1021 SEPAKEYEANFFP 1033 + + E E FP Sbjct: 981 RDASSEQEITIFP 993 >gi|262202886|ref|YP_003274094.1| DNA polymerase III subunit alpha [Gordonia bronchialis DSM 43247] gi|262086233|gb|ACY22201.1| DNA polymerase III, alpha subunit [Gordonia bronchialis DSM 43247] Length = 1180 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 361/1079 (33%), Positives = 567/1079 (52%), Gaps = 78/1079 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + + + AI +TD N+F A EF A I+P Sbjct: 4 SFVHLHNHTEYSMLDGAAKVAPLFAEAKRLGMTAIGMTDHGNMFGASEFYNTAVKNDIKP 63 Query: 70 IIGCQLDI----------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 IIG + + D +D+ ++ G + ++ A G + L Sbjct: 64 IIGIEAYVAPASRFETKRVTWGTRDQKDD-DVSGSG-----AYTHMTMVAENATGLRNLF 117 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +L S + Q + R+ + E EG+I TG SG + + A + Sbjct: 118 KLSSLASIEGQLGKWARMDADIIAEY-AEGIIATTGCPSGEVQTRLRLGHEREALEAAAK 176 Query: 174 FKKLFG-DRLYVNLQRHRGYDRYRESQVVQLAYTHEL---PLVATNNSLFLSEEDYEAHD 229 ++++FG + Y+ L H G + R + L +L PLV TN+ +++++ ++H+ Sbjct: 177 WQEIFGKENFYLELMEH-GLEIERRVRDGLLEVGRKLGIKPLV-TNDCHYVTKDHAKSHE 234 Query: 230 VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV 287 L+ V +S R + D +YLK+ +EM ++ S +P A +NT+EI R V Sbjct: 235 ALLCVQTGKTLSDPTRFKFDGDGYYLKSAAEMRELWDSVVPGACDNTLEIGERVQSYADV 294 Query: 288 --HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H +P F E + ++ LR + GL R GA ++Y++R ++EL Sbjct: 295 FTHRDRMPVFPVPEGE----SQQTWLRKEVAKGLAERRFAGAEVP----REYQERANYEL 346 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI +M F YFL+V D I+ A++ I VGPGRGS AGS+ A+AL IT+IDP+ LLFE Sbjct: 347 DVIIQMGFPAYFLVVGDLIRHAQEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFE 406 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPD DIDF RR E++RY +++G ++VAQ+ITFG+++ KAA++D R Sbjct: 407 RFLNPERVSMPDIDIDFDDRRRGEMVRYATDRWGSDKVAQVITFGTIKTKAAIKDSARVQ 466 Query: 466 --QMPYSQVDRLCKLIPND-PAHPVSLQAIA--DDSRFREAR------LADPSVDRLLEI 514 Q +S DR+ K +P A + + I D RF EA DP V ++ + Sbjct: 467 FGQPGFSIADRITKALPPPIMAKDIPVWGITDPDHERFNEAAEVRSLIETDPDVKKIYDT 526 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + LEGL R+A HA +++ PL+ +P++R + +T ++ E GL+K DFL Sbjct: 527 ALGLEGLIRNAGVHACAVIMSSEPLTDAIPVWRRAQDGAIITGWDYPSCEAIGLLKMDFL 586 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ +++ + RG +DL P DD +TY LL TLG+FQL+ MR+ L+ Sbjct: 587 GLRNLTVIGDAIENIKINRGFDLDLDDAPLDDPKTYELLARGDTLGVFQLDGGAMRELLK 646 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP-LIDPM---LKETQG 687 MQP EDI+A+++LYRPGP+ Y +RKNG++++ IHP L +P+ L +T G Sbjct: 647 RMQPTGFEDIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELAEPLKEILADTYG 706 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQ+MQIAQ ++GYSL AD+LRRAMGKK E + + E F +G NG S Sbjct: 707 LIVYQEQIMQIAQKVAGYSLGRADILRRAMGKKKAEVLAAEFEGFEAGMKANGFSGPAIK 766 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +++ + FA Y FNKSHAA Y ++S+ TA++K +YP E++A +T D+ +K + Sbjct: 767 ALWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLA 826 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866 D R+ I ++PP VN +F I + LAAI+ VG+ I+ A +K F S Sbjct: 827 DCRKLGITVLPPDVNESQRNFAAVGTDIRFGLAAIRNVGSGVVSSILAAREEKGKFTSFS 886 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 D+ ++D N++V ESL+ AGA D + R L + +K ++ Sbjct: 887 DYLGKIDVTACNKKVTESLIKAGAFDSLAHPRKGLFLVHGEAVESVLGTKKAEAIGQFDL 946 Query: 927 FAHEKGTFSDKITLEKFSVE------NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 F G +D E F+V+ ++ + E+ +LG Y SGHPL + + Sbjct: 947 FGDAGG--ADDTMAEVFAVKVPDEEWDTKHKLAIEREMLGLYVSGHPLSGVEHAIAAH-- 1002 Query: 981 KGYEESVATI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + S+ T+ G I + ++ S ++ +KG VT + E FFP Sbjct: 1003 --TDTSITTLLEGNIADGAQITIGGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFP 1059 >gi|282932049|ref|ZP_06337507.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1] gi|281303816|gb|EFA95960.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1] Length = 1039 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 330/1033 (31%), Positives = 552/1033 (53%), Gaps = 58/1033 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS+SLL+ + +++++ ++A+TD N + ++F A A ++P++G Sbjct: 6 LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAQKANLKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132 + ++ + +Q ++ + +GY+ ++ L S + L D G + + Sbjct: 66 TIRLN-----GIVDQAHRY-----DLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNL--QR 188 L L + ++ + ++ + + R N+ ++ + +K+ LY+ + + Sbjct: 116 LKQLAKYLSDQVFIVPANITSEL-RYLAENNEKLGSDFIRELQKIIPSSSDLYLGVYAGK 174 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247 ++ Y Y +S Q LPL AT + +L D+ L A+ +V Sbjct: 175 NQPYIDYAKSMAKQF----NLPLAATEDVQYLPASDHFLVKTLRAIEQGQKLVDTSSLAL 230 Query: 248 VTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 HYL+ E+VS +++ + AL N +IA C + P LP++ + D +K Sbjct: 231 QKGSHYLRTSGELVSAYNECGILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKK 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVA 361 LR +L Q +A+ ++ Q Y++RLD+EL +I +M F YFLIV Sbjct: 291 Y----LR---------QLVQKGLARRFNGQTIPEIYQKRLDYELKIIDQMGFDDYFLIVW 337 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D I +A +I GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R MPD D+D Sbjct: 338 DVINYAHSVDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLD 397 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RRDE+I+Y+ KYG + AQI+TFG+L AK ALRD R + Q + IP Sbjct: 398 IPDNRRDEIIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPF 457 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLS 540 + ++L +S+ + + +++LL + + +LEG+ RHAS HAAG+VI D+ ++ Sbjct: 458 SKSK-ITLAQAYQESKALQLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIA 516 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 Q+ + +PVTQ +E+ GL+K DFLGL+ LT+L +++ LA+ G+K+D Sbjct: 517 QIAGLQAGTLG-IPVTQQTKAHVEELGLLKIDFLGLRNLTILGDTVELLAKDGIKLDPKR 575 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +T L T +FQ ES G++ L + PD ED++A+ +LYRPGPI NI Sbjct: 576 IPLDDVKTLQLFQRGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDH 635 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + NRK GKE I + +L+ T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK Sbjct: 636 FINRKQGKEPITYPDSSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKK 695 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++ +D+++E+FI+GA KNG + A ++ + +FA+YGFN+SHA AY+ I++ A++K Sbjct: 696 KQDLIDQEREKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLK 755 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYP F A + N K ++ A++ ++I+ P +N D+ + + +I L Sbjct: 756 VHYPAAFFTALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLK 815 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKG+ R+I A K F SL DF ++D K L+ + + +++ AG D +R Sbjct: 816 AIKGLRVDFLRNI--AGLPKNFTSLADFLRKIDVKFLSEQAIAAMIKAGCFDKIDENRKM 873 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 LL + I + ++ +N T + G I LE+ NS+ + E+ VLG Sbjct: 874 LLANCKEIVENIKFTGQNET------LSEGLGG----IRLEQAPAPNSNEKATMEEEVLG 923 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 F + P+ V + + + T+ I + ++ K +T+KG + + TF Sbjct: 924 FSTTKTPILVVQKYAERFNAQALNS--FTVNETGIAVGKLIKLK-LIRTKKGDTMAFSTF 980 Query: 1021 SEPAKEYEANFFP 1033 + + E E FP Sbjct: 981 RDASSEQEITIFP 993 >gi|22299599|ref|NP_682846.1| DNA polymerase III subunit alpha [Thermosynechococcus elongatus BP-1] gi|22295783|dbj|BAC09608.1| DNA polymerase III alpha subunit [Thermosynechococcus elongatus BP-1] Length = 872 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 325/794 (40%), Positives = 472/794 (59%), Gaps = 47/794 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L +++ + PAIA+TD ++ A+E + ++P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPDLVARAMELGMPAIALTDHGVMYGAIELLKLCRGKPLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG ++ + N +T Q + P F V +L +GY L +L + +L QG Q Sbjct: 62 IIGNEMYVI---NGDITKQERKPRFHQV----VLAKNKQGYHNLCKLTTISHL--QGFQG 112 Query: 129 ----VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 R C++ L EGLI+ + G I +A ++A +++ FG+ Y Sbjct: 113 KGIFARPCINKELLAQYREGLIVTSACLGGEIPQAILQGKPELARSVAAWYQQTFGEDFY 172 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H DR ++V++ + ++ATN+S F+S D EAHD L+ + + ++S Sbjct: 173 LEIQDHGSQEDRVVNVELVRIGRELGIKIIATNDSHFISCHDVEAHDALLCIQTNKLLSD 232 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPILPRFI 296 + R R + YLK+ +EM +F D LP EAL NT+E+A + P P F Sbjct: 233 EKRLRYSGTEYLKSAAEMARLFRDHLPDEVIQEALANTLEVADKIEAYNIFREPQSPEFP 292 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + L A GL R Q + + A YRQRL++EL ++ +M FS Y Sbjct: 293 VPPG----HTADTYLEQVAWQGLLERF-QLSDRQQLEA-TYRQRLEYELKMLQQMGFSNY 346 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+V D+I++A+ +NIPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMP Sbjct: 347 FLVVWDYIKYARDHNIPVGPGRGSAAGSLVAYALRITNIDPVHHGLLFERFLNPERKSMP 406 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DFC DRR+EVI+YV KYG +RVAQIITF + +KA L+DV R L +PYSQ D++ Sbjct: 407 DIDTDFCIDRREEVIQYVTQKYGSDRVAQIITFNRMTSKAVLKDVARVLDIPYSQADQMA 466 Query: 477 KLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 KLIP PV L + + F+E +DP V R ++++ ++EG + HAAG+ Sbjct: 467 KLIPVVRGKPVKLAVMISEETPSPEFKEKYDSDPVVRRWIDMAMRIEGTNKTYGVHAAGV 526 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 VI PL QLVP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT+LQK+ + + + Sbjct: 527 VIASEPLDQLVPLQRNNDGAV-ITQYFMEDLESLGLLKMDFLGLKNLTMLQKTQELIEKN 585 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G ++DL +P DD +TY LL GIFQLESSGM Q + ++P +EDI ++++LYR Sbjct: 586 HGQRIDLDALPLDDAKTYQLLAEGKLEGIFQLESSGMHQIVRELKPSNLEDISSVLALYR 645 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+D ++ + NRK+G+E I H L+ P+L ET GV+ YQEQ+M++AQ L+GYSL + Sbjct: 646 PGPLDAGLIPKFINRKHGREPIQYQHELLKPILSETYGVLCYQEQIMRMAQDLAGYSLGQ 705 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK KEEM+K + FI GA+KNG+ IA +F+ + FA+Y Sbjct: 706 ADLLRRAMGKKKKEEMEKHEALFIEGAAKNGVPSAIAQELFKQMLDFAEY---------- 755 Query: 770 AVISYQTAWMKTHY 783 +S +TA M Y Sbjct: 756 -CLSGETAVMTVEY 768 >gi|170078017|ref|YP_001734655.1| DNA polymerase III subunit alpha [Synechococcus sp. PCC 7002] gi|169885686|gb|ACA99399.1| DNA polymerase III alpha subunit [Synechococcus sp. PCC 7002] Length = 882 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 312/806 (38%), Positives = 475/806 (58%), Gaps = 51/806 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA + ++ + + PAIA+TD ++ A+E + I+P Sbjct: 2 SFVGLHIHSDYSLLDGASQIKPLIKRAEELKMPAIALTDHGVMYGAIELLKTCRNKRIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128 IIG ++ + D T + K V+L +GY+ L++L + +L QGK Sbjct: 62 IIGNEMYVINGDIEDKTQRFKKYHQ-----VVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116 Query: 129 -VRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R C++ L E EGLIM + G + + Q A + +K +FGD Y+ + Sbjct: 117 FARPCINKELIEQHHEGLIMTSACLGGEVPQCILKGEYQRAREVAKWYKNIFGDDYYLEI 176 Query: 187 QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR ++V++A ++ ++ATN+S F+S D EAHD L+ + + ++++ R Sbjct: 177 QDHGSQEDRIVNVEIVKIAQELDIKIIATNDSHFISCYDVEAHDALLCIQTAKLITEDKR 236 Query: 246 PRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 R + YLK+ EM +F D + +A+ NT+E+A + + P +P + E Sbjct: 237 LRYSGTEYLKSADEMRKLFRDHLDPGIIDQAIANTLEVAAKVEPYKILGEPRIPDYPVPE 296 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 ++ L GL RL A+ Y++RL++EL ++ +M FS YFL+ Sbjct: 297 G----HTADSYLEAVTWDGLLKRLKCKTQAEV--DPTYKERLEYELQMMQQMGFSTYFLV 350 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D++++A+ N+IPVGPGRGS AGS+ AY+L IT+IDP+ SLLFERFLNP+R SMPD D Sbjct: 351 VWDYVKYARDNDIPVGPGRGSAAGSLVAYSLGITNIDPIHHSLLFERFLNPERKSMPDVD 410 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 DFC +RRDE+I+YV KYG +RVAQIITF + +KA L+DV R L +PY + D + K+I Sbjct: 411 TDFCIERRDEMIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADMMAKMI 470 Query: 480 PNDPAHPVSLQA-IADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 P P L+ I+DD+ F+ DP V R ++++ ++EG + HAAG+VI Sbjct: 471 PVARGKPAKLKVMISDDTPEPEFKRRYETDPQVRRWVDMAIRIEGTNKTFGVHAAGVVIS 530 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594 PL + VP+ R+ + +TQ+ M+ +E GL+K DFLGLK LT ++K+ D + + R V Sbjct: 531 STPLDEAVPLQRNNEGAV-ITQYYMEDVEAMGLLKMDFLGLKNLTTIKKAADLIKEYRHV 589 Query: 595 KVDLSLIPFD------------------DHETYHLLTTKGTL-GIFQLESSGMRQALEGM 635 ++DL +P D D + H L +G L GIFQLES GM++ ++ + Sbjct: 590 ELDLDQLPLDERKALEIISKGHAKKLPGDIDKTHDLFGRGDLEGIFQLESDGMKKIVQDL 649 Query: 636 QPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +P IEDI ++++LYRPGP+D I ++ NRK+G EKI H L+ +L ET GV++YQE Sbjct: 650 RPSGIEDISSVLALYRPGPLDAGLIPIFINRKHGVEKIEYQHELLQSILNETYGVLVYQE 709 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 Q+M++AQ L+GYSL EAD+LRRAMGKK +EM K + +F+ GA+ NG+S+ IA ++F+ + Sbjct: 710 QIMKMAQDLAGYSLGEADLLRRAMGKKKIDEMKKHEAKFVEGAATNGVSEAIARDLFDQM 769 Query: 754 AKFADY---GFNKSHAAAYAVISYQT 776 KFA+Y G Y V+ QT Sbjct: 770 VKFAEYCLAGGTPVVTVEYGVLPIQT 795 >gi|297205881|ref|ZP_06923276.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus jensenii JV-V16] gi|297149007|gb|EFH29305.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus jensenii JV-V16] Length = 1040 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 326/1029 (31%), Positives = 547/1029 (53%), Gaps = 50/1029 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS+SLL+ + +++++ ++A+TD N + ++F A ++P++G Sbjct: 7 LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKVNLKPLLGM 66 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132 + ++ + +Q ++ + +GY+ ++ L S + L D G + + Sbjct: 67 TIRLN-----GIVDQAHRY-----DLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLT 116 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + ++ + ++ + + R N+ ++ + +K+ + L + G Sbjct: 117 LKQLAKYLSDQVFIVPANITSEL-RYLAENNEKLGSDFIRELQKIIPSSSDLYLGAYAGK 175 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251 ++ +A LPL AT + +L D+ L A+ +V Sbjct: 176 NQPYIDYAKSMAKQFNLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLALQKGS 235 Query: 252 HYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 HYL+ E+VS +++ + AL N +IA C + P LP++ + D + Sbjct: 236 HYLRTSGELVSAYNECSILSALHNAAKIADECKASVTFTQPELPKYKQSFAPD----SKI 291 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR +L Q +AK ++ Q Y++RLD+EL +I +M F YFLIV D I Sbjct: 292 YLR---------QLVQKGLAKRFNGQPIPEIYQKRLDYELKIIDQMGFDDYFLIVWDVIN 342 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A +I GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R MPD D+D + Sbjct: 343 YAHSVDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDN 402 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDE+I+Y+ KYG + AQI+TFG+L AK ALRD R + Q + IP + Sbjct: 403 RRDEIIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSK 462 Query: 486 PVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 ++L +S+ + + +++LL + + +LEG+ RHAS HAAG+VI D+ ++Q+ Sbjct: 463 -ITLAQAYQESKALQLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAG 521 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + +PVTQ +E+ GL+K DFLGL+ LT+L +++ LA+ G+K+D IP D Sbjct: 522 LQAGTLG-IPVTQQTKAHVEELGLLKIDFLGLRNLTILGDTIELLAKDGIKLDPKRIPLD 580 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T L T +FQ ES G++ L + PD ED++A+ +LYRPGPI NI + NR Sbjct: 581 DIKTLQLFQKGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDHFINR 640 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K GKE I + +L+ T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK ++ Sbjct: 641 KQGKEPITYPDSSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDL 700 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D+++E+FI+GA KNG + A ++ + +FA+YGFN+SHA AY+ I++ A++K HYP Sbjct: 701 IDQEREKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYP 760 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 F A + N K ++ A++ ++I+ P +N D+ + + +I L AIKG Sbjct: 761 AAFFTALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLKAIKG 820 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 + R+I A K F SL DF ++D+K L+ + + +++ AG D +R LL + Sbjct: 821 LRVDFLRNI--AGLPKNFTSLADFLRKIDAKFLSEQAIAAMIKAGCFDKIDENRKMLLAN 878 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 I + ++ +N T + G I LE+ NS+ + E+ VLGF + Sbjct: 879 CKEIVENIKFTGQNET------LSEGLGG----IRLEQAPAPNSNEKATMEEEVLGFSTT 928 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 P+ V + + + T+ I + ++ K +T+KG + + TF + + Sbjct: 929 KTPILVVQKYAERFNAQALNS--FTVNETGIAVGKLIKLK-LIRTKKGDTMAFSTFRDAS 985 Query: 1025 KEYEANFFP 1033 E E FP Sbjct: 986 SEQEITIFP 994 >gi|42519003|ref|NP_964933.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533] gi|41583290|gb|AAS08899.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533] Length = 1038 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 342/1036 (33%), Positives = 543/1036 (52%), Gaps = 61/1036 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 V LQ S ++LLE + N+ + AIA+TD N + ++F + A GI+P++ Sbjct: 4 VSLQNLSGFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDIGIKPLL 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVR 130 G QL I+ G ++++ +GY+ ++ L S + LL + G++ + Sbjct: 64 GMQLRIN----------GLIDGANKYDLIVIAKDDQGYRNILRLSSAVNLLTENGEKEIV 113 Query: 131 ICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ 187 + L L++ +G LI++T + + N+ +V L + L +Y+ + Sbjct: 114 LTLEDLKKYLGH--LILITPSNLHSELKMLQTNNPKVGANYLRKAQDLLPSSSSMYLGVY 171 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246 G Y + + LA LPL A + +L+ + L A+ +T + ++ Sbjct: 172 ADSGQQEYI-NYIRSLATQFNLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENIEQLA 230 Query: 247 RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + HYLKN E+ I+ D+ +AL+N EI + C+ ++ P LP+F + Sbjct: 231 KQAGSHYLKNSEELQVIYRKFDIEDALKNAEEIGKICTAEIKFQDPQLPKFKQ------- 283 Query: 305 KEEENELRNKAVAGLEV--RLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 NK E LAQ +AK ++ Q YR+RLD+EL VI M F YFLI Sbjct: 284 --------NKFPTSKEYLHSLAQTGLAKRFNNQIPTKYRERLDYELQVINEMGFDDYFLI 335 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D + +A +I GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R MPD D Sbjct: 336 VWDVMNFAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDID 395 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +D +RRDEVI+Y+ KYG AQI+TFG+L AK L+DV R + + R I Sbjct: 396 LDIPDNRRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAI 455 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+ +A + + L ++ LE L RH S HAAG+VI D L Sbjct: 456 PHSKGKITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSL 515 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 +++V + +PVTQ +E GL+K DFLGL+ LT+L + L G+ ++ + Sbjct: 516 AEIVGLQAGPLG-IPVTQQTKSNVESLGLLKIDFLGLRNLTILGNIVAALRADGININPN 574 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD ET L T +FQ ES G+++ LE + PD EDI+A+ +LYRPGPI+NI Sbjct: 575 HIPLDDQETLDLFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNID 634 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + NRK+GKE++ P + +L T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM K Sbjct: 635 HFINRKHGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSK 694 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + + +++ +FI GA K G K A +++ +A+FA+YGFN+SHA AY+ I++ A+ Sbjct: 695 KNADVIQRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYF 754 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP F A + M N KI ++ A++ I+I+PP + DF + + +I L Sbjct: 755 KVHYPGAFYLALLNSNMGNRNKIAQYLMQAQEAGIKILPPDIENSKTDFSLENGKILVGL 814 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AI+G+ + + I+E +P S+ DF ++D+ L+ +E+L+ AG D +R Sbjct: 815 KAIRGLRSDLLKQILEIK--RPIKSMTDFLWKIDNNLLSADAVENLIKAGTFDRLAPNRN 872 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQR 957 +LL+ ++ + + N + +F T K+ EK + E S++ E Sbjct: 873 ELLKINKDLVESVKMAGSNLS-----LFE----TLEPKVEEEKMPTAAEKSAMEVE---- 919 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +GF +P+ + RK K + + +G I + ++ K T+KG + + Sbjct: 920 AMGFSTGINPIIAVQKYARKFNAKRLQVFESNEQG--IAVGKLIKVK-PITTKKGDNMAF 976 Query: 1018 VTFSEPAKEYEANFFP 1033 FS+ + E + FP Sbjct: 977 AVFSDTSGEKDFTIFP 992 >gi|302335488|ref|YP_003800695.1| DNA polymerase III, alpha subunit [Olsenella uli DSM 7084] gi|301319328|gb|ADK67815.1| DNA polymerase III, alpha subunit [Olsenella uli DSM 7084] Length = 1302 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 347/1054 (32%), Positives = 525/1054 (49%), Gaps = 100/1054 (9%) Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI GC+ D ++ + + ++LL GY LI+ +S+ + Sbjct: 126 IKPIFGCEAYFITDDCIERGTKQRRY-----HLILLAKNERGYVNLIKCMSQAAGHEMMY 180 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R L L+ EGLI + G I + + A + TF+ +FGD Y+ + Sbjct: 181 YKPRTTLDMLKRY-HEGLICQSACVQGIIQQRVIEGDVEGARQWARTFQDVFGDDFYMEI 239 Query: 187 QRH-----RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Q H G+ DR + ++++A + +V TN+ +L+ ED D+L + +T + Sbjct: 240 QDHGLEFPNGWNDRKLDEYLIKIADELGVKVVCTNDIHYLTREDASTQDILSCIGKATTI 299 Query: 241 SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 R R+ + Y+K+ EM +FS P+A +NT+E+A +C + L ++ LP F Sbjct: 300 DDNSRMRMEGTEFYMKSEEEMRQLFSWYPQACDNTLEVADKCDYELDWNSMYLPEF---- 355 Query: 300 CDDIQKEE--ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 ++K E E R + GL R +G + R R + E +I F+ YF Sbjct: 356 -PGLRKGETAEERFREECERGLAKRYGEGWRDLEIGGWNVRDRFEHEYKIITEKGFANYF 414 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV D++QWAK N I VGPGRGS AG++ AYA+ IT+ DPL L+FERFL+P R MPD Sbjct: 415 LIVQDYVQWAKDNGIGVGPGRGSAAGAIVAYAMNITNFDPLENGLMFERFLSPQRSEMPD 474 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D+DF + V+++V++ YG +RV ++IT+ +++AK A+ D R L P RL K Sbjct: 475 IDMDFDDEHLQMVLQHVRDVYGEDRVCKVITYSTIKAKQAINDANRVLGFPVYMGQRLSK 534 Query: 478 LIPNDPA-------HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 ++ NDP H + F EA D R+++ + +EG R HA Sbjct: 535 MLSNDPKLTLPNALHKNEKKPDQYSPDFEEAYNKDADAHRIIDAALSIEGFMRGEGVHAC 594 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL- 589 +I P++ VP D + ++ +TQ+ + GL+K DFLGL+TLT++ K+L+ + Sbjct: 595 ATLIAPTPVTDHVPTKLDTKGNVTITQYEGHSVADMGLLKMDFLGLRTLTVINKALENIR 654 Query: 590 ----------------------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 V +D+ F D Y LL + T G+FQ+ES+G Sbjct: 655 RSYPDLSRADELPEQVRSAIKPGATCVDLDVDKCDFSDPAIYELLGSGHTAGVFQVESAG 714 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 M ++GMQP + I+AL++LYRPGP+ +V Y NR NGKE +V + +L ET Sbjct: 715 MTATIKGMQPTEYKHIVALIALYRPGPLGAGMVTSYINRMNGKEPVVFYDDRLSDILDET 774 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEAD--VLRRAMGKKIK--------EEMDKQKE----R 731 G ++YQEQVMQI+ +S +S E+D + + KKIK E D E Sbjct: 775 YGTMVYQEQVMQISMKMSNFSPGESDGRIRKPVAKKKIKMLTSQVFHWEGDGADETIYDH 834 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 +++GA NG + +A I++ + +FA Y FNKSH+A YA++ QTAW+K+H+P EF+A+ Sbjct: 835 WMNGALGNGYQRDVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKSHFPREFMASV 894 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 +T M +KI + R+ I ++PP VN DF + + A I+GVG Sbjct: 895 LTSYMGKTDKIVHYVTSCRREGIDVLPPDVNESGKDFTATPQGVRFGFAGIRGVGDGVGE 954 Query: 852 HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD---- 906 IM E A PF SL DFC RVD + NRRV+E+L+ +GA D GY R QL+ +D Sbjct: 955 AIMAEREARGPFKSLHDFCERVDGSQANRRVVEALIKSGAFDSTGYPRKQLMGFVDKNDP 1014 Query: 907 -NIQKYAQWVEKNRTNKHE---NIFAHEKGT-FSDKITLEKFSVE-NSSVRFENEQRVLG 960 NI A +K++ N ++FA G F D I E + + + E VLG Sbjct: 1015 ANIIDAAAKRQKDKANGQVSMFDMFADVAGAGFEDDIPEPNPHDEWDRNTKLAQEHEVLG 1074 Query: 961 FYFSGHPLDVYKPILRKMGIKGYE--------------ESVATIR-----GNNIRLAAM- 1000 Y S HPL Y+ + K + Y AT R G IRLA M Sbjct: 1075 IYVSDHPLRPYEYAISKA--RDYTLSEIEESEEVVDPVSGAATTRYKVPEGKPIRLAGMV 1132 Query: 1001 -VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V +K T+KG ++ VT + E FP Sbjct: 1133 PVGGVVKKVTKKGDQMAIVTLEDMEGEVTLVVFP 1166 Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 29/45 (64%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54 +FVHL HS +S+L+GA + +++ + + PA+A+TD LF Sbjct: 2 AFVHLHNHSDFSILDGATPVESLVKRAVDLKMPAVALTDHGYLFG 46 >gi|323340850|ref|ZP_08081101.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus ruminis ATCC 25644] gi|323091701|gb|EFZ34322.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus ruminis ATCC 25644] Length = 1120 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 360/1073 (33%), Positives = 564/1073 (52%), Gaps = 120/1073 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-P 69 F LQV S+YSLL+ L +++ ++ + A+ +TD + L+ A EF + GI+ P Sbjct: 2 FAPLQVKSAYSLLQSPLKISDYVEAASKMGYEALCLTDVDVLYGAFEFFEACRKYGIKKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL---LD--- 123 +IG +L++ QG + S++LL A GY+ L+++ S LD Sbjct: 62 VIGIELNM----------QGDGEEEPI-SLLLLAKNAAGYRNLVKISSNKLSENSLDPHD 110 Query: 124 --QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FG 179 Q ++ CL +G+ ++ S + + F FKKL G Sbjct: 111 NPQTCDDIKDCL--------DGVAVIVSPESIKVASSPKF------------FKKLQSNG 150 Query: 180 DRLYVN----LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 +LY+ R D YR +A T ++P +A + +L +DY VL A+ Sbjct: 151 AKLYLGKGPQFSRELLLDAYR------IAETLKIPQIALSKVEYLKPDDYFGQVVLQAID 204 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILP 293 ++ R ++ YLK+ SE + + + T ++ F L LP Sbjct: 205 ADERINFDQR--MSGSEYLKSPSEYQIDYKNAGMETEFGQTEKLLSEIDFWLTPSEISLP 262 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVI 348 + K ++ + A L+ RL I + + Y++RLD EL VI Sbjct: 263 HY---------KFQKGVAKVSAHDYLK-RLCADGIKRCFRENPDKIDIYQKRLDHELKVI 312 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 M F YFLIV+ Q+A+ I VGPGRGS AGS+ +Y L ITD+DP++++LLFERFL Sbjct: 313 HEMGFEDYFLIVSGITQYARSVGIIVGPGRGSAAGSLVSYVLRITDVDPIKYNLLFERFL 372 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 N +R MPD D+D ++RD +I+YV + YG +AQIITF + AK ALRD R + Sbjct: 373 NEERHEMPDIDLDIPDNKRDRIIKYVYDTYGSRHMAQIITFDTFGAKQALRDGCRIFGLT 432 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 ++ D K IP + +A + R R +RL E +QKLEGL RH STH Sbjct: 433 QAETDAWSKAIPFGDKMTLE-RARRESQRIRNLIADSKRNERLFETAQKLEGLPRHFSTH 491 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 AAGIV+ D+ L ++VP+ + +D +TQF+ K +EKAGL+K D LGLK L +L + D Sbjct: 492 AAGIVLSDQNLDEVVPV--QIGNDGYLMTQFSKKPVEKAGLLKIDLLGLKNLRILNTAKD 549 Query: 588 FLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + Q + K+DL IP DD T L T GIFQ +S G+RQA+ ++P+ ED++AL Sbjct: 550 LVNQNKASKLDLEQIPLDDKATLELFYNAKTEGIFQFDSYGIRQAMLKIRPENFEDVVAL 609 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 +LYRPGPI NI + R++G++ + +++P+L T G+I+YQEQ MQ++ + G++ Sbjct: 610 NALYRPGPIRNIDEFTARRHGRKTVSYPAKVLEPILNSTYGIIVYQEQAMQVSSKMGGFT 669 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L EAD+LR+A+ KK E +++ + +F++GA K G SK A+ +++ + +F +YGFN+SHA Sbjct: 670 LGEADILRQAISKKEHETIERMRVKFVAGAQKKGFSKEDALRVYDYIERFGEYGFNRSHA 729 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AY+ +++Q A++K HYP EF A ++ + NVEK + F A++ I+I+ P +N Sbjct: 730 VAYSKMAFQMAYLKAHYPAEFYCALLSTVIGNVEKTQSFLAAAKKRKIKILAPDINKSSY 789 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIM---EASADKPFDSLEDFCSRV----------- 872 DF++ D I + ++KG+ R I+ A +PF SL+DF +R+ Sbjct: 790 DFRISDGGIMFGFLSVKGIRFDFIRQILAERHAGGYRPFKSLDDFMNRMVERALVDKHDH 849 Query: 873 --DSKKLN------RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 D+KK R ++E+L++ GA D R QLL LD + KY Q E Sbjct: 850 DGDAKKREKIAKSYRPIVETLIYVGAFDSLEADRSQLLNRLDVLVKYDQL--SMSVPLLE 907 Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 ++F K K+TL++ R E E+ LG Y S HPLD Y + +G Sbjct: 908 SLFVPSKKNVR-KLTLDE--------RLEKEKERLGVYLSAHPLDKYSAFAQGIG----A 954 Query: 985 ESVATIRGNNIRLAAMVVSK----QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 S+A++ + A+V+ + ++ KT+KG + +V+ + E EA FFP Sbjct: 955 SSLASLVPDQ---QAIVLVRIKEIKKIKTKKGDEMAFVSCIDQTGEMEATFFP 1004 >gi|296140319|ref|YP_003647562.1| DNA polymerase III subunit alpha [Tsukamurella paurometabola DSM 20162] gi|296028453|gb|ADG79223.1| DNA polymerase III, alpha subunit [Tsukamurella paurometabola DSM 20162] Length = 1183 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 347/1010 (34%), Positives = 543/1010 (53%), Gaps = 69/1010 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA ++ + + A+ ++D N+F A +F A I+P Sbjct: 6 SFVHLHNHTEYSMLDGAAKVDPLFAEAKRLGMTAVGMSDHGNMFGASDFYNTAVKYDIKP 65 Query: 70 IIGCQLDIDMQD--NLKMTNQGKTPFPTVPS-----------IVLLVSTAEGYQRLIELV 116 IIG + I + N K G P+ S + ++ A G + L +L Sbjct: 66 IIGIEAYIAPESRFNTKRVRWGD---PSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS 122 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S + Q + R+ + E EG+I TG SG + Q A + +++ Sbjct: 123 SLASIEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHEQEALEAAAKWQE 181 Query: 177 LFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +FG + Y+ L H G D R RE ++++ + +ATN+ +++++ E+H L+ Sbjct: 182 IFGKENFYLELMDH-GIDIERRVREG-LLEIGRKLGIKPLATNDCHYVTKDKAESHGALL 239 Query: 233 AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQV--H 288 + +S R + D +YLK+ EM ++ + +P A ++TVEI R +V H Sbjct: 240 CIQTGKTLSDPTRFQFDGDGYYLKSAQEMRELWDAQVPGACDSTVEIGERVQSYKEVWEH 299 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 +PRF E +E+ L ++ + GL R G DY +R +EL+VI Sbjct: 300 KDRMPRFPVPE----NHTQESFLESEVMDGLNRRFPDGP------PPDYVERARYELSVI 349 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 M F YFL+V D I A + I VGPGRGS AGS+ A+AL IT+IDP+ LLFERFL Sbjct: 350 NEMGFPAYFLVVGDLIAHAHEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFL 409 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466 NP+R+SMPD DIDF RR E+I Y K+G ++VAQ+ITFG+++ KAA++D R + Q Sbjct: 410 NPERVSMPDIDIDFDDRRRGEMITYASEKWGSDKVAQVITFGTIKTKAAIKDSARVIYGQ 469 Query: 467 MPYSQVDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQK 517 YS DR+ K +P A +S++ I D + R++EA DP V ++ +++ Sbjct: 470 PGYSIADRITKALPPPIMAKDISVKGITDPAHERYKEAVEVRQLIETDPDVKKIYDMALG 529 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ Sbjct: 530 LEGLIRNAGVHACAVIMSCDPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLR 589 Query: 578 TLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ +L + RG+ +D+ +P DD TY LL TLG+FQL+ MR L MQ Sbjct: 590 NLTVIGDALANIKHNRGIDLDMDQLPLDDETTYQLLQRGNTLGVFQLDGGPMRDLLRRMQ 649 Query: 637 PDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGVII 690 P EDI+A+ +LYRPGP ++ Y +RKNG++++ IHP L +P+ L ET G+I+ Sbjct: 650 PTKFEDIVAVGALYRPGPMGVNAHNDYADRKNGRQQVKPIHPELEEPLAEILSETFGLIV 709 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQ+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+ F G NG S+ ++ Sbjct: 710 YQEQIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYGGFQQGMLDNGFSQPAITALW 769 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 E + FA Y FNKSHAAAY ++SY TA++K +YP E++AA +T D+ +K + D R Sbjct: 770 ETVLPFAGYAFNKSHAAAYGLVSYWTAYLKANYPAEYMAALLTSVGDDKDKAAIYLGDCR 829 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFC 869 + I ++PP VN F I + + +++ VG I+ +K F S D+ Sbjct: 830 RLGITVLPPDVNESFHAFTSVGEDIRFGMGSVRNVGEGVVASIVNTREEKGNFTSFSDYL 889 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 ++++ +++V ESL+ AG D + R L + + +K ++F Sbjct: 890 AKIEVAACSKKVTESLIKAGGFDSLEHPRKGLFLVHSDAIESVLSTKKAEAVGQFDLFGS 949 Query: 930 ---EKG-------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 E G F+ K+ E++ ++ + E+ +LG Y S HPLD Sbjct: 950 MGDEGGGTEPIDDVFTIKVPDEEWDGKH---KLALEREMLGLYVSAHPLD 996 >gi|330998194|ref|ZP_08322020.1| DNA polymerase III, alpha subunit [Paraprevotella xylaniphila YIT 11841] gi|329568886|gb|EGG50684.1| DNA polymerase III, alpha subunit [Paraprevotella xylaniphila YIT 11841] Length = 1316 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 346/1056 (32%), Positives = 549/1056 (51%), Gaps = 106/1056 (10%) Query: 68 QPIIGCQLDIDMQ--DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 +PI GC++ + + D ++ G+ +++L GY L++LVS+ + G Sbjct: 149 KPIFGCEMYVAPRRLDQMEKEKDGRRY-----HLIVLAKNETGYHNLVKLVSKSWT--DG 201 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + E EGLI+ + +G + R + AE+ + +K++FGD Y+ Sbjct: 202 FYVRPRTDRFELEAHREGLIICSACIAGEVPRKILSGDLEGAEEAVQWYKRVFGDNYYLE 261 Query: 186 LQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 LQRH D + +++++LA +++ LV TN+ F+ +ED EAHD L+ Sbjct: 262 LQRHEVKDPDQRANRETFPLQQRANARLIELARKYDVKLVCTNDCHFVEQEDAEAHDRLI 321 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ + + R + + K R+EM +F+D+PEAL NT +I + F HAPI+ Sbjct: 322 CLSTNRDLDDPKRMLYSKQEWFKTRAEMNEVFADVPEALANTCDICDQVEFYSIDHAPIM 381 Query: 293 PRFI------------EKECDD--------------IQKEEENELRNKAVAGLE------ 320 P F +K D+ + E+ E + K + G + Sbjct: 382 PNFAIPEEFGTEEGYRKKYTDEDLFEEFTRDENGNVVLSREDAEQKVKKLGGCDKLYRLK 441 Query: 321 ------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN- 370 L AK Y + R+R++FEL+V+ M F GYFLIV D+I A+ Sbjct: 442 LEADYLAELTYIGAAKLYGDPLPEHVRERINFELHVMKTMGFPGYFLIVQDYINAARHEL 501 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 N+ VGPGRGS AGS AY L IT IDP+ + LLFERFLNPDR+S+PD D+DF D R +V Sbjct: 502 NVSVGPGRGSAAGSAVAYCLGITKIDPIEYDLLFERFLNPDRISLPDIDVDFDDDGRGKV 561 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-------NDP 483 + +V KYG E+VA IIT+G++ K A++DV R ++P + LCKLIP N Sbjct: 562 LSWVTQKYGEEKVAHIITYGTMATKLAIKDVARVEKLPLDISNGLCKLIPDKLPDDENGK 621 Query: 484 AHPVSL-QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + ++L AI+ ++A + +P + + ++ LEG R+ HA G++I +S Sbjct: 622 SRKMNLPNAISCIPELQQAEASPNPLLRDTIRYARMLEGNVRNTGVHACGVIICRDDVSD 681 Query: 542 LVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKV 596 VP+ ++ L TQ+ IE GLIK DFLGLKTL+++++ + G+++ Sbjct: 682 WVPVSTAEDKETGEKLRCTQYEGSVIEDTGLIKMDFLGLKTLSIIKECQANIYDSLGMEI 741 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ + D TY L T+G FQ ES GM++ L +QP ED+IA+ +LYRPGP+D Sbjct: 742 DVDALDITDPATYRLYCDGRTIGTFQFESPGMQKYLRELQPSTFEDLIAMNALYRPGPMD 801 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + +RK G++ + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D LR+A Sbjct: 802 YIPDFIDRKQGRKPVEYDIPCMEKYLKDTYGITVYQEQVMLLSRQLADFTRGESDTLRKA 861 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK+ E+++ +FI G KNG + I+ KFA Y FNKSHA Y+ ++YQT Sbjct: 862 MGKKLIEKLNHMYPKFIEGGKKNGHDPKVLEKIWADWKKFASYAFNKSHATCYSWVAYQT 921 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRI 835 A++K ++P +++AA M+ + N+ I K + + I + P VN F V D I Sbjct: 922 AYLKANFPAQYMAAVMSRSLANITDITKLMSECKSIGINTLGPDVNISRRKFSVDVDGNI 981 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L A+KG+G + I+ E A P+ ++ DF RV S + R LESLV +GA DCF Sbjct: 982 RFGLGAVKGLGDSAVDAIVKEREAHGPYKNIFDFIQRVPSGAVKRNNLESLVLSGAFDCF 1041 Query: 895 -GYSRMQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--- 946 G +R Q + I + A++ + +T+K A + F D +E + E Sbjct: 1042 EGITREQYFGVNAKGESFIDQLARYGSRYQTDKD----AVQNSLFGDMDMVEIATPEVPQ 1097 Query: 947 ----NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------GIKGYEESVATIRGNNIR 996 +S R E+ ++G Y S HPLD Y IL+ + +K E+ V ++ Sbjct: 1098 AEPWSSLERLNKERDLVGIYLSAHPLDDYAVILQNVCNVHMADLKDLEQFVNM----DLT 1153 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 L MV + ++ ++ G G VT + YE F Sbjct: 1154 LGGMVTAVRKGISKTGKPYGIVTMEDFTGAYELALF 1189 Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58 FVHL VH+ YS+L+G S++ ++DK D +AITD N+ + EF Sbjct: 4 FVHLHVHTQYSILDGQASVSRLVDKAMKDGMRGMAITDHGNMMAIKEF 51 >gi|111018082|ref|YP_701054.1| DNA polymerase III subunit alpha [Rhodococcus jostii RHA1] gi|110817612|gb|ABG92896.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus jostii RHA1] Length = 1178 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 348/1071 (32%), Positives = 566/1071 (52%), Gaps = 65/1071 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + + ++ A+ +TD N++ A EF +A GI+P Sbjct: 4 SFVHLHNHTEYSMLDGAAKVGPLFEEAERLGMSAVGMTDHGNMYGASEFYNEAKKQGIKP 63 Query: 70 IIGCQLDIDMQD--NLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + I + N K G + + ++ A G + L +L S Sbjct: 64 IIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + Q + R+ L EG+I TG SG I + A + +++++G Sbjct: 124 SIEGQLGKWARMDEE-LIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWG 182 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H +R +++++ E+P +ATN+ ++++E E H+ L+ + Sbjct: 183 KDNFFLELMDHGLSIERRVREGLLEISKKLEIPPLATNDCHYVTKEAAENHEALLCIQTG 242 Query: 238 TVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQV--HAPILP 293 +S R + D +YLK +EM +++ D +P A +NT+ IA R V H +P Sbjct: 243 KTLSDPTRFKFDGDGYYLKPAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDRMP 302 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F E + + LR + + GL+ R G ++Y R D+E+ VI M F Sbjct: 303 IFPVPEGE----TQGTWLRKEVMRGLDRRFPDGP------PEEYLARADYEIGVILEMGF 352 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFL+V D I A++ I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R+ Sbjct: 353 PAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERV 412 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471 SMPD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAA++D R Q ++ Sbjct: 413 SMPDIDIDFDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAI 472 Query: 472 VDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQKLEGLY 522 D++ K +P A +S+ I D + R++EA ++P V ++ + ++ LEGL Sbjct: 473 ADQITKALPPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLI 532 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A HA +++ PL +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 533 RNAGVHACAVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVI 592 Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++D + A RG+ +DL + DD TY LL+ TLG+FQL+ S MR L MQP E Sbjct: 593 GDAIDNIKANRGIDLDLDTLALDDQATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFE 652 Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI+A+++LYRPGP+ Y +RKNG++++ IHP ++ LKE T G+I+YQEQ+ Sbjct: 653 DIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQI 712 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQIAQ ++GYSL +AD+LRRAMGKK +++ F G N S+ +++ + Sbjct: 713 MQIAQKVAGYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILP 772 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSHAA Y ++S+ T ++K +YP E++A +T D+ +K + D R+ I Sbjct: 773 FAGYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGIT 832 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874 ++PP VN V+F I + + A++ VG I++A +K F D+ +++D+ Sbjct: 833 VLPPDVNESEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDA 892 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-- 932 +++V ESL+ AG D G+ R L+ + +K ++F + Sbjct: 893 AACSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADE 952 Query: 933 ----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 F+ KI E++ +S R E+ +LG Y SGHPL+ + +L + ++ Sbjct: 953 SISSVFNVKIPDEEW---DSKHRLALEREMLGLYVSGHPLNGVEHVLSAQS----DTAIP 1005 Query: 989 TI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 TI G + + ++ S ++ + G + E FFP Sbjct: 1006 TILEGDIKDGTQVTVGGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFP 1056 >gi|170017064|ref|YP_001727983.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20] gi|169803921|gb|ACA82539.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20] Length = 1113 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 346/1039 (33%), Positives = 544/1039 (52%), Gaps = 69/1039 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQ+ S+YSLL+ ++ I+ AIA+TD N ++ A+EF QKA GI+P+ Sbjct: 2 YAPLQILSAYSLLKNPNTITQIIRTAKDRHYGAIALTDINVMYGAVEFYQKAKDMGIKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L ++ N T FP +VL+ GYQ L+ L S + Sbjct: 62 FGVTLQVNGLVNTSTT------FP----LVLIAENQTGYQNLMWLSSAKMTAQDTTMTFD 111 Query: 131 ICLSWLQEIGT-----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + + LQ I L L +D + S+++ ++ L Y+ Sbjct: 112 LLVDHLQGIHVILPHDSELSQLIASEYQEVDNYWHQLSNKIDDQHL-----------YIG 160 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKD 244 + H +++ Q + H+ LVA ++ +L+ +D VL A+ A+ + K Sbjct: 161 I--HPQLAPQIRARLAQFSQIHQASLVALDDVDYLNADDAFTTQVLKAIDANVKLDGIKA 218 Query: 245 RPRVTPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQV-HAPILPRFIEKEC 300 + + H L + ++ + D L A +N ++ R L LP F Sbjct: 219 LAQQSGSHVLVDFEQLRQSYQDDEALKLAFKNNEQLVARSHVSLTFKQTTALPPF----- 273 Query: 301 DDIQKEEENE---LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + E N L+N A+ GL ++ I HAQ Y +RL EL +I ++ F+ YF Sbjct: 274 -QLPAETANAAEYLKNLAMTGLNAKMH---ITSQQHAQ-YLERLHNELAIINKLGFNDYF 328 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV D + +AK+N+I +G GRGS AGS+ A++L ITDIDP++F LLFERFLN +R+ MPD Sbjct: 329 LIVWDIVNFAKQNHIQLGVGRGSAAGSLVAFSLGITDIDPVKFGLLFERFLNAERVQMPD 388 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DID+ +RR++V+ Y+ KYG AQIITFG+L AK ALRD R + + + R+ Sbjct: 389 IDIDWPDNRREDVLAYLHQKYGQRNFAQIITFGTLAAKQALRDTARVFGVSQTMMSRISN 448 Query: 478 LIPNDP-AHPVSLQAIADDSRFREARLAD-PSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 +P V++ DS L D + D LL+ +QK+EGL R+ STHAAG+V+ Sbjct: 449 AVPQGKQGRRVTIGEALKDSDALSRVLGDIDNGDLLLKTAQKIEGLPRNYSTHAAGVVLS 508 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 D PL +P+ S L +TQF +E GL+K D LGL LT+L ++L + Q Sbjct: 509 DSPLVNTLPVQSGSESRL-LTQFEKNPVEALGLLKIDILGLSNLTILAQTLYYAKQYLPD 567 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + D+ +P DD T L T G+FQ ESSG++ L+ +QP E I+A+ +LYRPGP Sbjct: 568 RFDIGHVPLDDKATLALYAKGDTNGVFQFESSGIKHVLKQLQPATFEHIVAVNALYRPGP 627 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 NI + R++G+E + + P + +L T G+I+YQEQVM +A+ +G++L EADVLR Sbjct: 628 SRNIESFIKRRHGQETVTVLDPSLKTILAPTFGIIVYQEQVMLVAEKYAGFTLGEADVLR 687 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 AM KK +M +FISGA G ++ A IF + +FA+YGFN+SHA AY+ +S+ Sbjct: 688 SAMSKKKLAQMADMHGKFISGAVSQGHDQSQAEQIFAYIDEFANYGFNRSHAVAYSKLSF 747 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 Q A+MK HYP+ F A + + + +KI+ + +A+ I + P+VN + + + Sbjct: 748 QLAYMKVHYPIAFFTALLNANLGSPDKIRLYVTEAKARGIVVKAPNVNQSDRFWTINKDF 807 Query: 835 IYYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + L +IKGV T A I E + PF+S++ R+ K R VL +V+AGALD Sbjct: 808 LQMGLHSIKGVRTDFVAALIDERKNNGPFESIQSLVRRLPEKFRKRDVLTQMVYAGALDS 867 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 FGY+R++L+ +LD++ + A + E I + K ITL + + Sbjct: 868 FGYNRVELVTALDDLIEAASFGEL--------ILSETKIKKMADITLTE--------KLV 911 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 +E+ +G SGHPLD + I+++ + + ++ +++ M+ S +Q +T+KG Sbjct: 912 HEKETIGVNLSGHPLDTFASIIKQNDFQQIAD--VSLAKEPVKMIVMIDSVRQTRTKKGE 969 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 + +VT S+ F Sbjct: 970 TMAFVTVSDTTGTISLTIF 988 >gi|56751907|ref|YP_172608.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 6301] gi|56686866|dbj|BAD80088.1| DNA polymerase III alpha subunit [Synechococcus elongatus PCC 6301] Length = 870 Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust. Identities = 306/773 (39%), Positives = 454/773 (58%), Gaps = 40/773 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGI 67 SFV L +HS YSLL+GA L +++ + PAIA+TD ++ A+E K C I Sbjct: 2 SFVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELL-KVCKNQGNI 60 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI--VLLVSTAEGYQRLIELVSRMYLLDQG 125 +PIIG ++ + + + P P V ++L +GYQ L++L S +L QG Sbjct: 61 RPIIGNEMYV-------INSPIDDPNPRVRKYHPIVLAKNKKGYQNLVKLTSISHL--QG 111 Query: 126 KQS----VRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + R C+ E EGLI+ + G I +A + VA + +++ FG+ Sbjct: 112 FKGRGIFARPCIDKEHLEKYREGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGE 171 Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ +Q H DR ++V++A + LVATN+S F+S D EAHD L+ + + Sbjct: 172 DFYLEIQDHGSPEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKL 231 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILP 293 V + R R + YLK+ EM +F D LP+ A+ NT+ IA + + P +P Sbjct: 232 VVEDKRLRYSGTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIP 291 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F + EE + A GL RL A YR RL++E+ ++ M F Sbjct: 292 TFPVPD----GYNEETYMAEVARQGLAERLNCDRYEDCEEA--YRDRLEYEIKMMHEMGF 345 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 + YFL+V D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+ LLFERFLNP+R Sbjct: 346 ASYFLVVWDYIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERK 405 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC D+RD+VI YV KYG +RVAQIITF + +KA L+DV R L +PY + D Sbjct: 406 SMPDIDTDFCIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEAD 465 Query: 474 RLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 R+ KLIP P L+ + D F+E D V ++++ ++EG + HA Sbjct: 466 RMAKLIPVARGKPAKLKVMISDQTPAPEFKEKYEKDARVKHWVDMALRIEGTNKTFGVHA 525 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI PL ++VP+ R+ + +TQ+ M+ IE GL+K DFLGL+ LT++QK++D + Sbjct: 526 AGVVISAVPLDEIVPLQRNNDGQV-ITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLV 584 Query: 590 AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + G +D +P DD +TY LL G+FQLESSGMRQ + ++P +EDI ++++ Sbjct: 585 QETSGQAIDPDRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILA 644 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+D ++ + NRK+G+E I ++ P+L ET G+++YQEQ+M+IAQ + GY+ Sbjct: 645 LYRPGPLDAGLIPKFINRKHGREAIDYADQMLQPILNETYGIMVYQEQIMKIAQDMGGYT 704 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 L EAD+LRRAMGKK EM K + F+ GA KNG+++ +A +F+ + FA+Y Sbjct: 705 LGEADLLRRAMGKKKMSEMVKHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEY 757 >gi|119512710|ref|ZP_01631782.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414] gi|119462630|gb|EAW43595.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414] Length = 876 Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/812 (38%), Positives = 471/812 (58%), Gaps = 64/812 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D + AIA+TD ++ A+E + + I+P Sbjct: 2 SFVPLHIHSDYSLLDGASQLPELVDHAISLGMKAIALTDHGVMYGAVELIKICRSKSIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128 IIG ++ I D K + K V+L +GY+ L+++ + +L QGK Sbjct: 62 IIGNEMYIINGDFTKQERRPKY------HQVVLAKNTQGYKNLVKITTISHLDGVQGKGI 115 Query: 129 V-RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R C++ L + EGLI+ + G I +A N A K +K++FGD Y+ + Sbjct: 116 FSRPCINKDLLKQYREGLIVTSACLGGEIPQAILSNRPDAARKIAKWYKEIFGDDYYLEI 175 Query: 187 QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR ++V++A + +ATN+S F+S D EAHD L+ + ++S+ R Sbjct: 176 QDHGSQEDRIVNVEIVKIARELNIKFIATNDSHFISCFDVEAHDALLCIQTGQLISEDKR 235 Query: 246 PRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPILPR--FIE 297 R + YLK+ EM +F D LP EA+ T E+A + + P +P Sbjct: 236 MRYSGTEYLKSADEMKQLFRDHLPDDIIAEAIATTEEVADKVGVYDIMGDPQIPTPPIPS 295 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 D EE A GL RL + + ++ Y++RL++EL ++ M FS YF Sbjct: 296 GHTPDTYAEE------VAWNGLLERLNRKSRSEVDPV--YKERLEYELKMLQTMGFSTYF 347 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+V D+I++A+ NNIPVGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R SMPD Sbjct: 348 LVVWDYIKFARDNNIPVGPGRGSAAGSLVAYAMKITNIDPVHHGLLFERFLNPERKSMPD 407 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D DFC ++RD+VI YV KYG +RVAQIITF L +KA L+DV R L +PY + D++ K Sbjct: 408 IDTDFCIEKRDKVIEYVTEKYGKDRVAQIITFNRLTSKAVLKDVARVLNIPYGEADKMAK 467 Query: 478 LIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 LIP P L+ + D F+E + V L+++ ++EG ++ HAAG+V Sbjct: 468 LIPVVRGKPTKLKVMISDKTPAPEFKERYDNNAHVRHWLDMAIRIEGTNKNFGVHAAGVV 527 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592 I PL ++VP+ R+ + +TQ+ M+ +E GL+K DFLGL+ LTL+Q+++D + + + Sbjct: 528 ISADPLDEIVPLQRNNDGSV-ITQYFMEDLESMGLLKMDFLGLRNLTLIQRTIDLIEETK 586 Query: 593 GVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 G ++D S +P D ++Y LL GIFQLESSGMRQ + Sbjct: 587 GYRIDPDEITGQERKAQKILAKGEHSNLPKDVKKSYELLEAGELEGIFQLESSGMRQIVR 646 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 ++P IEDI ++++LYRPGP+D ++ + NRK+G+E I +++P+L ET G+++Y Sbjct: 647 DLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGREAIDYQSAILEPILNETYGIMVY 706 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQ+M+IAQ ++GYSL +AD+LRRAMGKK EM KQ+E+F+ GA+KNG+ K +A +FE Sbjct: 707 QEQIMKIAQDMAGYSLGQADLLRRAMGKKKVSEMQKQREKFVDGAAKNGVKKQVADELFE 766 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + KFA+Y +SY T + Y Sbjct: 767 QMLKFAEY-----------CLSYDTEILTVEY 787 >gi|81301008|ref|YP_401216.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 7942] gi|81169889|gb|ABB58229.1| DNA polymerase III, alpha subunit / Intein [Synechococcus elongatus PCC 7942] Length = 870 Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust. Identities = 306/773 (39%), Positives = 454/773 (58%), Gaps = 40/773 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGI 67 SFV L +HS YSLL+GA L +++ + PAIA+TD ++ A+E K C I Sbjct: 2 SFVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELL-KVCKNQGNI 60 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI--VLLVSTAEGYQRLIELVSRMYLLDQG 125 +PIIG ++ + + + P P V ++L +GYQ L++L S +L QG Sbjct: 61 RPIIGNEMYV-------INSPIDDPNPRVRKYHQIVLAKNKKGYQNLVKLTSISHL--QG 111 Query: 126 KQS----VRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + R C+ E EGLI+ + G I +A + VA + +++ FG+ Sbjct: 112 FKGRGIFARPCIDKEHLEKYREGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGE 171 Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ +Q H DR ++V++A + LVATN+S F+S D EAHD L+ + + Sbjct: 172 DFYLEIQDHGSPEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKL 231 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILP 293 V + R R + YLK+ EM +F D LP+ A+ NT+ IA + + P +P Sbjct: 232 VVEDKRLRYSGTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIP 291 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F + EE + A GL RL A YR RL++E+ ++ M F Sbjct: 292 TFPVPD----GYNEETYMAEVARQGLAERLNCDRYEDCEEA--YRDRLEYEIKMMHEMGF 345 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 + YFL+V D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+ LLFERFLNP+R Sbjct: 346 ASYFLVVWDYIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERK 405 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC D+RD+VI YV KYG +RVAQIITF + +KA L+DV R L +PY + D Sbjct: 406 SMPDIDTDFCIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEAD 465 Query: 474 RLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 R+ KLIP P L+ + D F+E D V ++++ ++EG + HA Sbjct: 466 RMAKLIPVARGKPAKLKVMISDQTPAPEFKEKYEKDARVKHWVDMALRIEGTNKTFGVHA 525 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VI PL ++VP+ R+ + +TQ+ M+ IE GL+K DFLGL+ LT++QK++D + Sbjct: 526 AGVVISAVPLDEIVPLQRNNDGQV-ITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLV 584 Query: 590 AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + G +D +P DD +TY LL G+FQLESSGMRQ + ++P +EDI ++++ Sbjct: 585 QETSGQAIDPDRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILA 644 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 LYRPGP+D ++ + NRK+G+E I ++ P+L ET G+++YQEQ+M+IAQ + GY+ Sbjct: 645 LYRPGPLDAGLIPKFINRKHGREAIDYADQMLQPILNETYGIMVYQEQIMKIAQDMGGYT 704 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 L EAD+LRRAMGKK EM K + F+ GA KNG+++ +A +F+ + FA+Y Sbjct: 705 LGEADLLRRAMGKKKMSEMVKHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEY 757 >gi|223043605|ref|ZP_03613650.1| DNA polymerase III, alpha subunit [Staphylococcus capitis SK14] gi|222443093|gb|EEE49193.1| DNA polymerase III, alpha subunit [Staphylococcus capitis SK14] Length = 1067 Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust. Identities = 339/1030 (32%), Positives = 548/1030 (53%), Gaps = 95/1030 (9%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H++Y LL +L + ++++K + A+AITDT+ L+ +F A I PI G Sbjct: 4 HLNIHTAYDLLNASLKIEDVVNKAKNEGYRALAITDTHVLYGFPKFYDACIAKDIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I + D L TV ++VL EG + L +L S + + K+ + Sbjct: 64 --MTISLTDGLY----------TVETVVL-AQNNEGLKALYQLSSAIKM----KEKEEVP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L WL+ +I+ ID Q+ E F D+++V + H Sbjct: 107 LEWLKRYDKNLIIIFKD-----IDNT----HKQIIEA--------FNDKIHVYIN-HTSN 148 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKDRPRV 248 D +V ++ +L+ ED + L A+ ++ + KD Sbjct: 149 DIVNRKKV------------WLKSARYLNREDADTISALQAIKDNSKLDIINDSKDFGEH 196 Query: 249 TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 PD K E+ ++ E + +NT +I C L H +LP+++ + Sbjct: 197 FPDQ--KEFEEL-----EIDEKIKQNTEDIVDLCKAELVYHQSLLPQYVTPD-------- 241 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ + + +R + + Y RL E +I +M F YFLIV+D I +A Sbjct: 242 -GEVSKDYLWSVLIRKLNEW---NLNNEQYLNRLKHEYEIITKMGFEDYFLIVSDLIHYA 297 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR Sbjct: 298 KTHDVMVGPGRGSSAGSLVSYLLEITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRR 357 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 ++VI+YVQ KYG V+ I+TFG L A+A RDVGR + + ++ + KLIP+ + Sbjct: 358 EKVIQYVQEKYGELHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLG--I 415 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +L + F+ + + E+S+KLEGL RH STHAAGI+I D+PL + P+ Sbjct: 416 TLDKAYQEEDFKSFVHRNHRNELWFEMSKKLEGLPRHTSTHAAGIIINDQPLYKYAPL-- 473 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606 + +TQ+ M E+ GL+K DFLGL+ L+++ + ++ + + V +D+ IPFDD Sbjct: 474 TLGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVNQVKKDLDVDIDVEAIPFDDK 533 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + LL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ I Y R++ Sbjct: 534 NVFKLLSQGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRH 593 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 K+ +H ++ +LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ Sbjct: 594 DPSKVEYLHNDLESILKSTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLE 653 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +++ F++GA +NG ++ I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K +YP Sbjct: 654 NERQHFVNGAKQNGYNEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNY 713 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A ++ + + +K +A+ + I+PP++N +K IY SL AIKGVG Sbjct: 714 FYANILSNVIGSEKKTSAIIDEAKHQKLNILPPNINESHWYYKATTKGIYLSLGAIKGVG 773 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + + I+ E + F DF R+ + +R++LE+L+ GA D FG +R LLQ++ Sbjct: 774 YQSVKTIVDERYNNGKFKDFFDFTRRIPKRVKSRKLLEALILVGAFDHFGKNRATLLQTI 833 Query: 906 DNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 D + A VE++ + +F K + DK L + + E+ LGFY Sbjct: 834 DQVLDTASDVEQD-----DMLFDILTPKQAYEDKEELP------DKMLSDYEKEYLGFYI 882 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 S HP++ K +K + Y+ A N+ + + +Q +T+ G + +VT ++ Sbjct: 883 SKHPVE--KEFDKKQYLGIYKLGNAQ---NHQPILVHFDAIKQIRTKNGQNMAFVTLNDG 937 Query: 1024 AKEYEANFFP 1033 + FP Sbjct: 938 MLLMDGVIFP 947 >gi|21283375|ref|NP_646463.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus MW2] gi|49486528|ref|YP_043749.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|297207585|ref|ZP_06924020.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911666|ref|ZP_07129110.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus TCH70] gi|38604909|sp|Q8NW58|DPO3A_STAAW RecName: Full=DNA polymerase III subunit alpha gi|60392206|sp|Q6G8M4|DPO3A_STAAS RecName: Full=DNA polymerase III subunit alpha gi|21204815|dbj|BAB95511.1| DNA POLYMERASE III ALPHA SUBUNIT [Staphylococcus aureus subsp. aureus MW2] gi|49244971|emb|CAG43432.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|296887602|gb|EFH26500.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887087|gb|EFK82288.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus TCH70] Length = 1065 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 342/1034 (33%), Positives = 536/1034 (51%), Gaps = 103/1034 (9%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT TV ++VL +G + L +L S I Sbjct: 64 ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSE------------IK 98 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 ++ L+ + E L + + ++ FKK+ GD+ HR Sbjct: 99 MNALEHVSFELL-------------------KRFSNNMIIIFKKV-GDQ-------HRDI 131 Query: 193 DRYRESQVVQLAYTHELPL-------VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 + E+ Y L + V N + + +D + L A+ +T + Sbjct: 132 VQVFETH--NDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHD 189 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 H+L + ++ E L IA++C L+ H +LP++ E D+ K Sbjct: 190 QEDFGAHFLTEKE--INQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQY-ETPNDESAK 246 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + + + LE+ Y Y +RL +E VI M F YFLIV+D I Sbjct: 247 KYLWRVLVTQLKKLEL---------NYDV--YLERLKYEYKVITNMGFEDYFLIVSDLIH 295 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF Sbjct: 296 YAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDT 355 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+ VI+YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ Sbjct: 356 RRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG- 414 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ Sbjct: 415 -ITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPL 473 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 + L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFD Sbjct: 474 TKGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFD 531 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + + LL+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R Sbjct: 532 DQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITR 591 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ K+ +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + Sbjct: 592 RHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAV 651 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 ++ +++ FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP Sbjct: 652 LESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYP 711 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 F A ++ + + +K + ++A++ I I+PP++N +K IY S+ IKG Sbjct: 712 NYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKG 771 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG + + I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ Sbjct: 772 VGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQ 831 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVL 959 ++D V N ++ F + K + DK L + + E+ L Sbjct: 832 AIDQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYL 878 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFY S HP+D K + K + ++ S A NN + +Q +T+ G + +VT Sbjct: 879 GFYVSQHPVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVT 933 Query: 1020 FSEPAKEYEANFFP 1033 ++ + + FP Sbjct: 934 LNDGIETLDGVIFP 947 >gi|314933855|ref|ZP_07841220.1| DNA polymerase III, alpha subunit [Staphylococcus caprae C87] gi|313654005|gb|EFS17762.1| DNA polymerase III, alpha subunit [Staphylococcus caprae C87] Length = 1067 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 339/1030 (32%), Positives = 549/1030 (53%), Gaps = 95/1030 (9%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL +H++Y LL +L + ++++K + A+AITDT+ L+ +F A I PI G Sbjct: 4 HLNIHTAYDLLNASLKIEDVVNKAKNEGYRALAITDTHVLYGFPKFYDACIAKDIHPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I + D L TV ++VL EG + L +L S + + K+ + Sbjct: 64 --MTITLTDGLY----------TVETVVL-AQNNEGLKALYQLSSAIKM----KEKEEVP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L WL+ +I+ ID Q+ E F D+++V + H Sbjct: 107 LEWLKRYDKNLIIIFKD-----IDNT----HKQIIEA--------FDDKIHVYIN-HTSN 148 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST----VVSQKDRPRV 248 D +V ++ +L+ ED + L A+ ++ + KD Sbjct: 149 DIVNRKKV------------WLKSARYLNREDADTISALQAIKDNSKLDIINDSKDFGEH 196 Query: 249 TPDHYLKNRSEMVSIFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 PD K E+ ++ E + +NT +I C L H +LP+++ + Sbjct: 197 FPDQ--KEFEEL-----EIDEKIKQNTEDIVDLCKAELVYHQSLLPQYVTPD-------- 241 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ + + +R + + Y RL E +I +M F YFLIV+D +Q+A Sbjct: 242 -GEVSKDYLWSVLIRKLNEW---NLNNEQYLNRLKHEYEIITKMGFEDYFLIVSDLMQYA 297 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR Sbjct: 298 KTHDVMVGPGRGSSAGSLVSYLLEITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRR 357 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 ++VI+YVQ KYG V+ I+TFG L A+A RDVGR + + ++ + KLIP+ + Sbjct: 358 EKVIQYVQEKYGELHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLG--I 415 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +L + F+ + + E+S+KLEGL RH STHAAGI+I D+PL + P+ Sbjct: 416 TLDKAYQEEDFKSFVHRNHRNELWFEMSKKLEGLPRHTSTHAAGIIINDQPLYKYAPL-- 473 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606 + +TQ+ M E+ GL+K DFLGL+ L+++ + ++ + + V +D+ IPFDD Sbjct: 474 TLGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVNQVKKDLDVDIDVEAIPFDDK 533 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + LL+ T GIFQLES G+R L+ +QP+ EDI+A+ SLYRPGP++ I Y R++ Sbjct: 534 NVFKLLSQGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRH 593 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 K+ +H ++ +LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ Sbjct: 594 DPSKVEYLHNDLESILKSTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLE 653 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +++ F++GA +NG ++ I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K +YP Sbjct: 654 NERQHFVNGAKQNGYNEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNY 713 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A ++ + + +K +A+ + I+PP++N +K IY SL AIKGVG Sbjct: 714 FYANILSNVIGSEKKTSAIIDEAKHQKLNILPPNINESHWYYKATSKGIYLSLGAIKGVG 773 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + + I+ E + F DF R+ + +R++LE+L+ GA D FG +R LLQ++ Sbjct: 774 YQSVKTIVDERYNNGKFKDFFDFTRRIPKRVKSRKLLEALILVGAFDHFGKNRATLLQTI 833 Query: 906 DNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 D + A VE++ + +F K + DK L + + E+ LGFY Sbjct: 834 DQVLDTASDVEQD-----DMLFDILTPKQAYEDKEELP------DKMLSDYEKEYLGFYI 882 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 S HP++ K +K + Y+ A N+ + + +Q +T+ G + +VT ++ Sbjct: 883 SKHPVE--KEFDKKQYLGIYKLGNAQ---NHQPILVQFDAIKQIRTKNGQNMAFVTLNDG 937 Query: 1024 AKEYEANFFP 1033 + FP Sbjct: 938 MLLMDGVIFP 947 >gi|88195511|ref|YP_500316.1| DNA polymerase III subunit alpha superfamily protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|14194671|sp|Q9F1K0|DPO3A_STAA8 RecName: Full=DNA polymerase III subunit alpha gi|12082345|dbj|BAB20884.1| DnaE [Staphylococcus aureus] gi|87203069|gb|ABD30879.1| DNA polymerase III, alpha subunit superfamily [Staphylococcus aureus subsp. aureus NCTC 8325] gi|329726967|gb|EGG63424.1| putative DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus 21189] Length = 1065 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 339/1033 (32%), Positives = 537/1033 (51%), Gaps = 101/1033 (9%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT TV ++VL +G + L +L S I Sbjct: 64 ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSE------------IK 98 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG- 191 ++ L+ + E L + + ++ FKK+ GD+ HR Sbjct: 99 MNALEHVSFELL-------------------KRFSNNMIIIFKKV-GDQ-------HRDI 131 Query: 192 ---YDRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 ++ + ++ + L+ + + V N + + +D + L A+ +T + Sbjct: 132 VQVFETHNDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQE 191 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 H+L + ++ E L IA++C L+ H +LP++ E D+ K+ Sbjct: 192 DFGAHFLTEKE--INQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQY-ETPNDESAKKY 248 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + + LE+ + Y +RL +E VI M F YFLIV+D I +A Sbjct: 249 LWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYA 297 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR Sbjct: 298 KTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRR 357 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + VI+YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ + Sbjct: 358 ERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--I 415 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +L F+E + +R I +KLEGL RH STHAAGI+I D PL + P+ + Sbjct: 416 TLDEAYQIDDFKEFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTK 475 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606 L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFDD Sbjct: 476 GDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQ 533 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + LL+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ Sbjct: 534 KVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRH 593 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 K+ +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ Sbjct: 594 DPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLE 653 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +++ FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP Sbjct: 654 SERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNY 713 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A ++ + + +K + ++A++ I I+PP++N +K IY S+ IKGVG Sbjct: 714 FYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVG 773 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + + I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ++ Sbjct: 774 YQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAI 833 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 D V N ++ F + K + DK L + + E+ LGF Sbjct: 834 DQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGF 880 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTF 1020 Y S HP+D +K K Y N + + K +Q +T+ G + +VT Sbjct: 881 YVSQHPVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAFVTL 934 Query: 1021 SEPAKEYEANFFP 1033 ++ + + FP Sbjct: 935 NDGIETLDGVIFP 947 >gi|329733207|gb|EGG69544.1| putative DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus 21193] Length = 1065 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 338/1032 (32%), Positives = 540/1032 (52%), Gaps = 99/1032 (9%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT TV ++VL +G + L +L S I Sbjct: 64 ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSE------------IK 98 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG- 191 ++ L+ + E L + + ++ FKK+ GD+ HR Sbjct: 99 MNALEHVSFELL-------------------KRFSNNMIIIFKKV-GDQ-------HRDI 131 Query: 192 ---YDRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 ++ + ++ + L+ + + V N + + +D + L A+ +T + Sbjct: 132 VQVFETHNDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQE 191 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 H+L + + E L IA++C+ L+ H +LP++ E D+ K+ Sbjct: 192 DFGAHFLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-ETPNDESAKKY 248 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + + LE+ + Y +RL +E VI M F YFLIV+D I +A Sbjct: 249 LWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYA 297 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR Sbjct: 298 KTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRR 357 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + VI+YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ + Sbjct: 358 ERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--I 415 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +L F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ + Sbjct: 416 TLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTK 475 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606 L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFDD Sbjct: 476 GDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQ 533 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + LL+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ Sbjct: 534 KVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRH 593 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 K+ +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ Sbjct: 594 DPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLE 653 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +++ FI GA +NG + I+ IF+L+ KF+DYGF ++HA +Y+ I+Y +++K HYP Sbjct: 654 SERQHFIEGAKQNGYHEDISKQIFDLILKFSDYGFPRAHAVSYSKIAYIMSFLKVHYPNY 713 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A ++ + + +K + ++A++ I I+PP++N +K IY S+ IKGVG Sbjct: 714 FYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVG 773 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + + I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ++ Sbjct: 774 YQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAI 833 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 D V N ++ F + K + DK L + + E+ LGF Sbjct: 834 DQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGF 880 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S HP+D K + K + ++ S A NN + +Q +T+ G + +VT + Sbjct: 881 YVSQHPVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLN 935 Query: 1022 EPAKEYEANFFP 1033 + + + FP Sbjct: 936 DGIETLDGVIFP 947 >gi|163787271|ref|ZP_02181718.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1] gi|159877159|gb|EDP71216.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1] Length = 1128 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 320/855 (37%), Positives = 470/855 (54%), Gaps = 76/855 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58 FVHL HS +S+L+ +S+ +++ A + PA+A+TD N+ A F Sbjct: 261 FVHLHNHSQFSILQSTISIKDLVAAAAKENMPAVALTDHGNMMGAFHFVSAVGNHNKGVK 320 Query: 59 SQKACAAG---------IQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108 +Q A A I+PIIGC+ + + D+ + G IVL+ +G Sbjct: 321 AQHAQAEENGDEKKGKLIKPIIGCEFFVCEKHDDKTRKDNGY-------QIVLMAKNKKG 373 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 Y L +L S + G V L E E LI LTG G + AE Sbjct: 374 YHNLAKLSSAAFT--DGFYYVPRIDKQLIEQYKEDLICLTGNLYGEVPSKVLNVGENQAE 431 Query: 169 KRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEA 227 + LL +K F D LY+ L RH D R + V +Q A H++ LVATNN+ ++ +E+ A Sbjct: 432 EALLWWKDTFQDDLYIELMRHNQEDENRVNPVLIQFAKKHDVKLVATNNTYYVEQENANA 491 Query: 228 HDVLMAVA----HSTVVSQKDRPRV---TPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 HD+L+ V +T + + R ++Y K+ EM ++F D+PEA+ N ++ + Sbjct: 492 HDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSEEMKALFRDVPEAIVNIQDVVDK 551 Query: 281 CSFILQVHAPILPRFI--------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332 +LP F + E D ++ E L++ G E R G Sbjct: 552 IEPYELARDVLLPAFDIPNEFKHEDDEADGGKRGENAFLKHLTYKGAEKRY-------GD 604 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 + ++RLDFEL+VI + GYFLIV DFI+ A+K ++ VGPGRGS AGSV AY L I Sbjct: 605 ITPEIKERLDFELSVIENTGYPGYFLIVEDFIREARKMDVSVGPGRGSAAGSVVAYCLWI 664 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV NKYG +VAQIIT+G++ Sbjct: 665 TNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGSNQVAQIITYGTM 724 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPN----DPAHPVSLQAIADDSRFREARLADPSV 508 AK+++RD R L +P DR+ KLIP +S + +A +FR L V Sbjct: 725 AAKSSIRDTARVLDLPLGDADRISKLIPTMSKLGKIFGLSEKDLA--KKFRAEDLE--KV 780 Query: 509 DRLLEISQK-------------LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 + LL IS LEG R+ HA G++I ++ VP+ SDL V Sbjct: 781 NELLNISDGEDLQAETVNQARVLEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDLYV 840 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTT 614 TQF+ +E AGL+K DFLGLKTLTL++ ++ + A+ + +D P DD ETY L Sbjct: 841 TQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHDILLDPENFPLDDEETYALFQR 900 Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674 T+GIFQ ES GM++ ++ ++P +D+IA+ +LYRPGP++ I + RK+G E+I Sbjct: 901 GETVGIFQYESPGMQKHMKNLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEEIDYD 960 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 P ++ LKET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK +DK K +FI Sbjct: 961 LPEMEEYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIE 1020 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 AS G+ I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ Sbjct: 1021 QASAKGLDAKKLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSN 1080 Query: 795 EMDNVEKIKKFCQDA 809 M++++ + F ++ Sbjct: 1081 NMNDIKSVTFFMEEC 1095 >gi|82751290|ref|YP_417031.1| DNA polymerase III alpha subunit [Staphylococcus aureus RF122] gi|82656821|emb|CAI81250.1| DNA polymerase III alpha subunit [Staphylococcus aureus RF122] Length = 1065 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 335/1027 (32%), Positives = 532/1027 (51%), Gaps = 89/1027 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVEALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT T+ ++VL G + L +L S++ + + Sbjct: 64 ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSKIKM----NSMENVS 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 LQ+ + +I+ + D F+S + Sbjct: 107 FELLQQFSSNLIIIFKNVADEHRDIVQDFDSHE--------------------------- 139 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 D Y + + V + V N + + +D + L A+ +T + H Sbjct: 140 DTYLDHRSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAH 196 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 +L + + E L IA++C+ L+ H +LP++ + D+ K+ + Sbjct: 197 FLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + LE+ Y Y +RL +E VI M F YFLIV+D I +AK N++ Sbjct: 254 VTQLKKLEL---------NYDV--YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKMNDV 302 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR+ VI+ Sbjct: 303 MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ ++L Sbjct: 363 YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ + Sbjct: 421 YQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611 L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFDD + + L Sbjct: 481 L--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFDL 538 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ Sbjct: 539 LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ Sbjct: 599 QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A Sbjct: 659 FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 ++ + + +K + ++A++ +I I+PP++N +K IY S+ IKGVG + + Sbjct: 719 LSNVIGSEKKTAQMIEEAKKQSITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778 Query: 852 HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ++D Sbjct: 779 VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835 Query: 911 YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 V N ++ F + K + DK L + + E+ LGFY S H Sbjct: 836 ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQH 885 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 P+D K + K + ++ S A NN + +Q +T+ G + +VT ++ + Sbjct: 886 PVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIET 940 Query: 1027 YEANFFP 1033 + FP Sbjct: 941 LDGVIFP 947 >gi|302333367|gb|ADL23560.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus JKD6159] Length = 1065 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 336/1028 (32%), Positives = 536/1028 (52%), Gaps = 91/1028 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVEALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT T+ ++VL G + L +L S++ + + Sbjct: 64 ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSKIKM----NSMENVS 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 LQ+ + +I+ + D F+S + Sbjct: 107 FELLQQFSSNLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 D Y + + V + V N + + +D + L A+ +T + H Sbjct: 140 DTYLDHRSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAH 196 Query: 253 YLKNRSEMVSIFSDLPEALENTVE-IARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 +L + E+ + D+ + V+ IA++C+ L+ H +LP++ + D+ K+ + Sbjct: 197 FLTEK-EIKQL--DINQGYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRV 252 Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 + LE+ + Y +RL +E VI M F YFLIV+D I +AK N+ Sbjct: 253 LVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTND 301 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR+ VI Sbjct: 302 VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVI 361 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491 +YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ + Sbjct: 362 QYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLRITLDEAY 421 Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 DD F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ + Sbjct: 422 QIDD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG 479 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610 L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFDD + + Sbjct: 480 LL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFD 537 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670 LL+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K Sbjct: 538 LLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 + +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ Sbjct: 598 VQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQ 657 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A Sbjct: 658 HFIEGAKENGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYAN 717 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850 ++ + + +K + ++A++ I I+PP++N +K IY S+ IKGVG + Sbjct: 718 ILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSV 777 Query: 851 RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ++D Sbjct: 778 KVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-- 835 Query: 910 KYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 V N ++ F + K + DK L + + E+ LGFY S Sbjct: 836 -----VLDGDLNIEQDGFLFDILTPKQIYEDKEELPDALIS------QYEKEYLGFYVSQ 884 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+D K + K + ++ S A NN + +Q +T+ G + +VT ++ + Sbjct: 885 HPVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGKNMAFVTLNDGIE 939 Query: 1026 EYEANFFP 1033 + FP Sbjct: 940 TLDGVIFP 947 >gi|57650573|ref|YP_186586.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus COL] gi|87161888|ref|YP_494343.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151221809|ref|YP_001332631.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|161509916|ref|YP_001575575.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142338|ref|ZP_03566831.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258450902|ref|ZP_05698955.1| DNA polymerase III subunit alpha [Staphylococcus aureus A5948] gi|262049018|ref|ZP_06021896.1| DNA polymerase III, alpha chain [Staphylococcus aureus D30] gi|262051793|ref|ZP_06024010.1| DNA polymerase III, alpha chain [Staphylococcus aureus 930918-3] gi|282924393|ref|ZP_06332066.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9765] gi|284024750|ref|ZP_06379148.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus 132] gi|294849863|ref|ZP_06790602.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9754] gi|304380705|ref|ZP_07363376.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81859569|sp|Q5HF71|DPO3A_STAAC RecName: Full=DNA polymerase III subunit alpha gi|57284759|gb|AAW36853.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus COL] gi|87127862|gb|ABD22376.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150374609|dbj|BAF67869.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|160368725|gb|ABX29696.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861438|gb|EEV84246.1| DNA polymerase III subunit alpha [Staphylococcus aureus A5948] gi|259160287|gb|EEW45314.1| DNA polymerase III, alpha chain [Staphylococcus aureus 930918-3] gi|259162835|gb|EEW47399.1| DNA polymerase III, alpha chain [Staphylococcus aureus D30] gi|269941182|emb|CBI49570.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus TW20] gi|282592894|gb|EFB97897.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9765] gi|294823202|gb|EFG39632.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9754] gi|302751529|gb|ADL65706.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340812|gb|EFM06741.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315197169|gb|EFU27508.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus CGS01] gi|320141645|gb|EFW33480.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320143799|gb|EFW35572.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|329314376|gb|AEB88789.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus T0131] Length = 1065 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 338/1033 (32%), Positives = 537/1033 (51%), Gaps = 101/1033 (9%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT TV ++VL +G + L +L S I Sbjct: 64 ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSE------------IK 98 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG- 191 ++ L+ + E L + + ++ FKK+ GD+ HR Sbjct: 99 MNALEHVSFELL-------------------KRFSNNMIIIFKKV-GDQ-------HRDI 131 Query: 192 ---YDRYRESQVVQLAYTHE-LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 ++ + ++ + L+ + + V N + + +D + L A+ +T + Sbjct: 132 VQVFETHNDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQE 191 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 H+L + ++ E L IA++C L+ H +LP++ E D+ K+ Sbjct: 192 DFGAHFLTEKE--INQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQY-ETPNDESAKKY 248 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + + LE+ + Y +RL +E VI M F YFLIV+D I +A Sbjct: 249 LWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYA 297 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR Sbjct: 298 KTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRR 357 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + VI+YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ + Sbjct: 358 ERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--I 415 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +L F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ + Sbjct: 416 TLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTK 475 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606 L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFDD Sbjct: 476 GDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQ 533 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + LL+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ Sbjct: 534 KVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRH 593 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 K+ +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ Sbjct: 594 DPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLE 653 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +++ FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP Sbjct: 654 SERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNY 713 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A ++ + + +K + ++A++ I I+PP++N +K IY S+ IKGVG Sbjct: 714 FYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVG 773 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + + I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ++ Sbjct: 774 YQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAI 833 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 D V N ++ F + K + DK L + + E+ LGF Sbjct: 834 DQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGF 880 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTF 1020 Y S HP+D +K K Y N + + K +Q +T+ G + +VT Sbjct: 881 YVSQHPVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAFVTL 934 Query: 1021 SEPAKEYEANFFP 1033 ++ + + FP Sbjct: 935 NDGIETLDGVIFP 947 >gi|282916962|ref|ZP_06324720.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus D139] gi|282319449|gb|EFB49801.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus D139] Length = 1065 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 333/1027 (32%), Positives = 531/1027 (51%), Gaps = 89/1027 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT T+ ++VL G + L +L S++ + + Sbjct: 64 ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSKIKI----NSMENVS 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 LQ+ + +I+ + D F+S + Sbjct: 107 FELLQQFSSNLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 D Y + + V + V N + + +D + L A+ +T + H Sbjct: 140 DTYLDHRSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAH 196 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 +L + + E L IA++C+ L+ H +LP++ + D+ K+ + Sbjct: 197 FLTEKE--IKQLDINQEYLTQVDAIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + LE+ + Y +RL +E VI M F YFLIV+D I +AK N++ Sbjct: 254 VTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDV 302 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR+ VI+ Sbjct: 303 MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ ++L Sbjct: 363 YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ + Sbjct: 421 YQIDNFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611 L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFD+ + + L Sbjct: 481 L--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVFEL 538 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ Sbjct: 539 LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ Sbjct: 599 QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A Sbjct: 659 FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 ++ + + +K + ++A++ I I+PP++N +K IY S+ IKGVG + + Sbjct: 719 LSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778 Query: 852 HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ++D Sbjct: 779 VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835 Query: 911 YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 V N ++ F + K + DK L + + E+ LGFY S H Sbjct: 836 ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQH 885 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 P+D K + K + ++ S A NN + +Q +T+ G + +VT ++ + Sbjct: 886 PVD--KMFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIET 940 Query: 1027 YEANFFP 1033 + FP Sbjct: 941 LDGVIFP 947 >gi|17375431|sp|P74750|DPO3A_SYNY3 RecName: Full=DNA polymerase III subunit alpha; Contains: RecName: Full=Ssp dnaE intein Length = 1355 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 300/791 (37%), Positives = 466/791 (58%), Gaps = 59/791 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D+ PAIA+TD ++ A+E + I+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKP 61 Query: 70 IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMYLL 122 IIG ++ DI++ + +Q V+L +GY+ L++L +S + + Sbjct: 62 IIGNEMYVINGDIEINKRHRRFHQ-----------VVLAKNNQGYRNLVKLTTISNLKGI 110 Query: 123 DQGKQSVRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 R C++ L E EGLI+ + G + +A A + +K LFGD Sbjct: 111 QGSGIFARPCINKELLEQYKEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDD 170 Query: 182 LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ +Q H DR +V++A ++ +VATN+S F+S D EAHD L+ + ++ Sbjct: 171 YYLEIQDHGSVEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLI 230 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILPR 294 +++ R R + YLK+ EM +F D LP+ A+ NT+E+A + + P +P Sbjct: 231 TEEKRLRYSGTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPH 290 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + E + + A GL RL + Y++RL++EL ++ +M F Sbjct: 291 YPIPP----NHTPETYVEDIAWDGLLERLK--CRERADITPVYKERLEYELRMLEKMGFC 344 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFL+V D+I++A+ + IPVGPGRGS AGS+ AY + IT+IDP+ L+FERFLNP+R S Sbjct: 345 TYFLVVWDYIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKS 404 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD D DFC DRRDE+I YV KYG ++VAQIITF + +KA L+DV R L +PY++ D+ Sbjct: 405 MPDVDTDFCIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDK 464 Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 + K+IP P L+ + D +F+ +P V + ++++ ++EG + HAA Sbjct: 465 MAKMIPVSRGKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI PL Q+VP+ ++ + +TQ+ M+ +E GL+K DFLGLK LT LQ++++ +A Sbjct: 525 GVVISSEPLDQIVPLQKNNDGAV-ITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVA 583 Query: 591 Q-RGVKVDLSLIPF------------------DDHETYHLLTTKGTL-GIFQLESSGMRQ 630 + +G+++DL +P DD + H L G L GIFQLES GM+Q Sbjct: 584 ETKGIELDLDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQ 643 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 + ++P IEDI ++++LYRPGP+D I ++ NRK+G+E+I H L++P+L ET GV Sbjct: 644 IVRDLKPSGIEDISSILALYRPGPLDAGLIPIFINRKHGREEISYQHKLLEPILNETYGV 703 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 ++YQEQ+M++AQ L+ YSL EAD+LRRAMGKK EEM K + +F+ G++K+G+ IA N Sbjct: 704 LVYQEQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAEN 763 Query: 749 IFELLAKFADY 759 +F+ + KFA+Y Sbjct: 764 LFDQMVKFAEY 774 Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 149/292 (51%), Gaps = 22/292 (7%) Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSH+ AYA ++YQTA++K +YPVE++AA +T D+ EK++K+ ++ ++ I + PP Sbjct: 935 FNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGITVEPPD 994 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA---SADKPFDSLEDFCSRVDSKKL 877 +N F I + L+A++ +G I+ A S +K F SL DFC++VD + + Sbjct: 995 INRSQRHFTPLGEAILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQVDLRVV 1054 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR +E+L+ AGA D +R QLL L+ + +AQ K + NIF S K Sbjct: 1055 NRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIFDSLTAGESIK 1114 Query: 938 IT---------------LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-IK 981 + +FS++ + + E+ LGFY S HPL + R + I Sbjct: 1115 AKEAANNGFEQEPSAPPVAEFSLQE---KLQLEKEHLGFYVSEHPLKSVQRSARLLSPIN 1171 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +R +A +V K+ + G + ++T + + + EA FP Sbjct: 1172 LVDLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVFP 1223 >gi|269203340|ref|YP_003282609.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus ED98] gi|262075630|gb|ACY11603.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus ED98] Length = 1065 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 335/1028 (32%), Positives = 528/1028 (51%), Gaps = 91/1028 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT TV ++VL +G + L +L S + + + Sbjct: 64 ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSEIKM----NSMENVS 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 LQ+ ++ +I+ + D F+S + Sbjct: 107 FELLQQFSSDLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 D Y + Q V + V N + + +D + L A+ + + H Sbjct: 140 DTYLDHQSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNAKLDLIHDQEDFGAH 196 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 +L + + E L IA++C+ L+ H +LP++ + D+ K+ + Sbjct: 197 FLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + LE+ Y Y +RL +E VI M F YFLIV+D I +AK N++ Sbjct: 254 VTQLKKLEL---------NYDV--YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDV 302 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR+ VI+ Sbjct: 303 MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ ++L Sbjct: 363 YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ + Sbjct: 421 YQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611 L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFDD + + L Sbjct: 481 L--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFEL 538 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ Sbjct: 539 LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ Sbjct: 599 QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A Sbjct: 659 FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 ++ + + +K + ++A++ I I+PP++N +K IY S+ IKGVG + + Sbjct: 719 LSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778 Query: 852 HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ++D Sbjct: 779 VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835 Query: 911 YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 V N ++ F + K + DK L + + E+ LGFY S H Sbjct: 836 ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQH 885 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAK 1025 P+D +K K Y N + + K +Q +T+ G + +VT ++ + Sbjct: 886 PVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAFVTLNDGIE 939 Query: 1026 EYEANFFP 1033 + FP Sbjct: 940 TLDGVIFP 947 >gi|226360211|ref|YP_002777989.1| DNA polymerase III subunit alpha [Rhodococcus opacus B4] gi|226238696|dbj|BAH49044.1| DNA polymerase III alpha subunit [Rhodococcus opacus B4] Length = 1178 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 346/1071 (32%), Positives = 567/1071 (52%), Gaps = 65/1071 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + + ++ + A+ +TD N++ A EF A GI+P Sbjct: 4 SFVHLHNHTEYSMLDGAAKVGPLFEEAERLEMSAVGMTDHGNMYGASEFYNVAKKQGIKP 63 Query: 70 IIGCQLDIDMQD--NLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + + + N K G + + ++ A G + L +L S Sbjct: 64 IIGIEAYVAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + Q + R+ L EG+I TG SG I + A + +++++G Sbjct: 124 SIEGQLGKWARMDEE-LIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEIWG 182 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H +R +++++ T +P +ATN+ +++++ E H+ L+ + Sbjct: 183 KDNFFLELMDHGLSIERRVREGLLEISKTLGIPPLATNDCHYVTKDAAENHEALLCIQTG 242 Query: 238 TVVSQKDRPRVTPDHY-LKNRSEMVSIFSD-LPEALENTVEIARRCSFILQV--HAPILP 293 +S R + D Y LK+ +EM +++ D +P A +NT+ IA R V H +P Sbjct: 243 KTLSDPTRFKFDGDGYFLKSAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDRMP 302 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F E + + LR + + GL+ R G ++Y R D+E+ VI M F Sbjct: 303 IFPVPEGE----TQGTWLRKEVMRGLDRRFPSGP------PEEYLARADYEIGVILEMGF 352 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFL+V D I A++ I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R+ Sbjct: 353 PAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERV 412 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471 SMPD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAA++D R Q ++ Sbjct: 413 SMPDIDIDFDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAI 472 Query: 472 VDRLCKLIPND-PAHPVSLQAIADDS--RFREARL------ADPSVDRLLEISQKLEGLY 522 D++ K +P A +S+ I D + R++EA ++P V ++ + ++ LEGL Sbjct: 473 ADQITKALPPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLI 532 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A HA +++ PL +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 533 RNAGVHACAVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVI 592 Query: 583 QKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++D + A RG+++DL + DD TY LL+ TLG+FQL+ S MR L MQP E Sbjct: 593 GDAIDNIKANRGIELDLDTLELDDTATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFE 652 Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI+A+++LYRPGP+ Y +RKNG++++ IHP ++ LKE T G+I+YQEQ+ Sbjct: 653 DIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQI 712 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQIAQ ++GYSL +AD+LRRAMGKK +++ F G N S+ +++ + Sbjct: 713 MQIAQKVAGYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILP 772 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSHAA Y ++S+ T ++K +YP E++A +T D+ +K + D R+ I Sbjct: 773 FAGYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGIT 832 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDS 874 ++PP VN V+F I + + A++ VG I++A +K F D+ +++D+ Sbjct: 833 VLPPDVNESEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDA 892 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-- 932 +++V ESL+ AG D G+ R L+ + +K ++F + Sbjct: 893 AACSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADE 952 Query: 933 ----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 F+ KI E++ +S R E+ +LG Y SGHPL+ + +L + ++ Sbjct: 953 SIASVFNVKIPEEEW---DSKHRLALEREMLGLYVSGHPLNGVEHVLSAQS----DTAIP 1005 Query: 989 TI------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 TI G + + ++ S ++ + G + E FFP Sbjct: 1006 TILEGDIKDGTQVTVGGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFP 1056 >gi|15924693|ref|NP_372227.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus Mu50] gi|15927280|ref|NP_374813.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus N315] gi|148268182|ref|YP_001247125.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus JH9] gi|150394249|ref|YP_001316924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus JH1] gi|156980020|ref|YP_001442279.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus Mu3] gi|255006487|ref|ZP_05145088.2| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794087|ref|ZP_05643066.1| DNA polymerase subunit III [Staphylococcus aureus A9781] gi|258415791|ref|ZP_05682062.1| DNA polymerase subunit III [Staphylococcus aureus A9763] gi|258421972|ref|ZP_05684892.1| DNA polymerase subunit III [Staphylococcus aureus A9719] gi|258438270|ref|ZP_05689554.1| DNA polymerase subunit III [Staphylococcus aureus A9299] gi|258443728|ref|ZP_05692067.1| DNA polymerase subunit III [Staphylococcus aureus A8115] gi|258445939|ref|ZP_05694115.1| DNA polymerase subunit III [Staphylococcus aureus A6300] gi|258448381|ref|ZP_05696498.1| DNA polymerase subunit III [Staphylococcus aureus A6224] gi|258454139|ref|ZP_05702110.1| DNA polymerase subunit III [Staphylococcus aureus A5937] gi|282893197|ref|ZP_06301431.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8117] gi|282927832|ref|ZP_06335443.1| DNA polymerase subunit III, alpha [Staphylococcus aureus A10102] gi|295406012|ref|ZP_06815820.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8819] gi|296274871|ref|ZP_06857378.1| DNA polymerase III DnaE [Staphylococcus aureus subsp. aureus MR1] gi|297245062|ref|ZP_06928939.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8796] gi|54036991|sp|P63980|DPO3A_STAAN RecName: Full=DNA polymerase III subunit alpha gi|54040952|sp|P63979|DPO3A_STAAM RecName: Full=DNA polymerase III subunit alpha gi|13701498|dbj|BAB42792.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus N315] gi|14247475|dbj|BAB57865.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus Mu50] gi|147741251|gb|ABQ49549.1| DNA polymerase III catalytic subunit, DnaE type [Staphylococcus aureus subsp. aureus JH9] gi|149946701|gb|ABR52637.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus JH1] gi|156722155|dbj|BAF78572.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus Mu3] gi|257788059|gb|EEV26399.1| DNA polymerase subunit III [Staphylococcus aureus A9781] gi|257839384|gb|EEV63857.1| DNA polymerase subunit III [Staphylococcus aureus A9763] gi|257842016|gb|EEV66445.1| DNA polymerase subunit III [Staphylococcus aureus A9719] gi|257848314|gb|EEV72305.1| DNA polymerase subunit III [Staphylococcus aureus A9299] gi|257851134|gb|EEV75077.1| DNA polymerase subunit III [Staphylococcus aureus A8115] gi|257855181|gb|EEV78120.1| DNA polymerase subunit III [Staphylococcus aureus A6300] gi|257858349|gb|EEV81234.1| DNA polymerase subunit III [Staphylococcus aureus A6224] gi|257863591|gb|EEV86348.1| DNA polymerase subunit III [Staphylococcus aureus A5937] gi|282590342|gb|EFB95421.1| DNA polymerase subunit III, alpha [Staphylococcus aureus A10102] gi|282764515|gb|EFC04641.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8117] gi|294969009|gb|EFG45030.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8819] gi|297178142|gb|EFH37390.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8796] gi|312830081|emb|CBX34923.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130663|gb|EFT86649.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus CGS03] gi|329727251|gb|EGG63707.1| putative DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus 21172] Length = 1065 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 335/1028 (32%), Positives = 527/1028 (51%), Gaps = 91/1028 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT TV ++VL +G + L +L S + + + Sbjct: 64 ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSEIKM----NSMENVS 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 LQ+ + +I+ + D F+S + Sbjct: 107 FELLQQFSSNLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 D Y + Q V + V N + + +D + L A+ + + H Sbjct: 140 DTYLDHQSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNAKLDLIHDQEDFGAH 196 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 +L + + E L IA++C+ L+ H +LP++ + D+ K+ + Sbjct: 197 FLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + LE+ Y Y +RL +E VI M F YFLIV+D I +AK N++ Sbjct: 254 VTQLKKLEL---------NYDV--YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDV 302 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR+ VI+ Sbjct: 303 MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ ++L Sbjct: 363 YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ + Sbjct: 421 YQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611 L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFDD + + L Sbjct: 481 L--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFEL 538 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ Sbjct: 539 LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ Sbjct: 599 QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A Sbjct: 659 FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 ++ + + +K + ++A++ I I+PP++N +K IY S+ IKGVG + + Sbjct: 719 LSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778 Query: 852 HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ++D Sbjct: 779 VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835 Query: 911 YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 V N ++ F + K + DK L + + E+ LGFY S H Sbjct: 836 ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQH 885 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAK 1025 P+D +K K Y N + + K +Q +T+ G + +VT ++ + Sbjct: 886 PVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAFVTLNDGIE 939 Query: 1026 EYEANFFP 1033 + FP Sbjct: 940 TLDGVIFP 947 >gi|298694972|gb|ADI98194.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus ED133] Length = 1065 Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust. Identities = 333/1027 (32%), Positives = 530/1027 (51%), Gaps = 89/1027 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT T+ ++VL G + L +L S++ + + Sbjct: 64 ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSKIKM----NSMENVS 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 LQ+ + +I+ + D F+S + Sbjct: 107 FELLQQFSSNLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 D Y + Q V + V + + +D + L A+ +T + H Sbjct: 140 DTYLDHQSV---LVQGIKHVWIQTVCYQTPQDADTISALAAIRDNTKLDLIHDQEDFGAH 196 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 +L + + E L IA++C+ L+ H +LP++ + D+ K+ + Sbjct: 197 FLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + LE+ + Y +RL +E VI M F YFLIV+D I +AK N++ Sbjct: 254 VTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDV 302 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR+ VI+ Sbjct: 303 MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ ++L Sbjct: 363 YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ + Sbjct: 421 YQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611 L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFD+ + + L Sbjct: 481 L--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVFEL 538 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ Sbjct: 539 LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPSKV 598 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ Sbjct: 599 QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A Sbjct: 659 FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 ++ + + +K + ++A++ I I+PP++N +K IY S+ IKGVG + + Sbjct: 719 LSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778 Query: 852 HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ++D Sbjct: 779 VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835 Query: 911 YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 V N ++ F + K + DK L + + E+ LGFY S H Sbjct: 836 ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQH 885 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 P+D K + K + ++ S A NN + +Q +T+ G + +VT ++ + Sbjct: 886 PVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIET 940 Query: 1027 YEANFFP 1033 + FP Sbjct: 941 LDGVIFP 947 >gi|331701392|ref|YP_004398351.1| DNA polymerase III subunit alpha [Lactobacillus buchneri NRRL B-30929] gi|329128735|gb|AEB73288.1| DNA polymerase III, alpha subunit [Lactobacillus buchneri NRRL B-30929] Length = 1115 Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust. Identities = 351/1040 (33%), Positives = 563/1040 (54%), Gaps = 67/1040 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+V LQV SSYSLL+ + + +++ + A+A+TD N ++ A+EF A I+P Sbjct: 2 SYVPLQVISSYSLLQSPIRIADLIAEAKDRGYQALALTDLNVMYGAVEFYDACLKAAIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG L + L +T++ VL+ +GY L++L + + + Sbjct: 62 LIGLTLQLP---GLILTDKEY-------GWVLIAKNQQGYANLLKLSTLKMTMPE----- 106 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQ 187 + S L + ++ +++L + ++ + A + K L D L + + Sbjct: 107 -LTASQLGDYLSDLVLILPPAAE--MNDLLLQGRADDAADLIDQVKSLGIDPNALKIGVD 163 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-- 245 H D + + +LA ++ LVA + +L+ DY + VL + ++ + Sbjct: 164 YHSS-DSLND-MLSKLAADKQVALVADSPVEYLNATDYFSMQVLKNIGAGEKIANVAQFS 221 Query: 246 PRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +V P ++L+ +++ + + L +AL +I C+ ++ P LP+F D Sbjct: 222 KQVGP-YWLRPATQIEAQYRQVHLADALTQVDQIVADCNVEIKKQQPKLPQFDTPNGID- 279 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 LR GL RL + I A Y +RLD EL+VI M F YFLIV D Sbjct: 280 ---SGTYLRQLCETGLADRLKKNQITD---ATPYHRRLDQELSVIHSMGFDNYFLIVWDV 333 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +A + +I GPGRGS AGS+ AY LTITD+DP+++ LLFERFLNP+R+ MPD D+D Sbjct: 334 INFAHQTDIITGPGRGSAAGSLVAYTLTITDVDPIKYDLLFERFLNPERVQMPDIDLDIP 393 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RDEVI+YV KYGH+RVAQIITFG+L AK ++RDVGR + +Q D+ K IPN Sbjct: 394 DDKRDEVIQYVHQKYGHKRVAQIITFGTLAAKQSIRDVGRVFGLNTAQQDQWSKAIPN-- 451 Query: 484 AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A V+L+ A+A+ R + P + L + +Q LEGL RH STHAAG+V+ D PL L Sbjct: 452 AFHVTLKDALANSQRLKNLVADSPLNEALYQTAQALEGLPRHYSTHAAGLVLSDDPLVNL 511 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601 VP+ ++ L +TQ++ ++E GL+K DFLGL+ L++L +L+ + KV D+S + Sbjct: 512 VPL-QNGNEGLLMTQYSKDYVESVGLLKMDFLGLRNLSILGDALEQVQLTTGKVLDISAV 570 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +T L T GIFQ ES+G+R L + P+ EDI + +LYRPGP+ NI Sbjct: 571 PLDDAKTIQLFADGDTTGIFQFESNGIRNVLRRLHPERFEDIALVNALYRPGPMQNIDEV 630 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK E + + +L+ T GVI+YQEQVM +A ++G+SL +AD+LRRAM KK Sbjct: 631 VKRKTNHEALTYPDDSLKDILQPTYGVIVYQEQVMLVASKMAGFSLGQADILRRAMSKKK 690 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 M++ K +F++GA + G S ++A +F+ + +FA+YGFNKSHA AY+ ++Y+ A++K Sbjct: 691 LGVMEQMKAQFMTGAKQRGYSDSVANKVFDYIERFANYGFNKSHAVAYSKMAYELAYLKV 750 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YP EF A + +N K+K++ Q A+ ++++ P++N F D +I + L + Sbjct: 751 YYPGEFHVALLNSVNNNSVKVKEYIQAAKSMGVKVVGPNINHSEARFTFQDQQIVFGLDS 810 Query: 842 IKGVGTTTARHIM------EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 IKGV RH M E + PF S DF SR+ K ++ +L++AGALD F Sbjct: 811 IKGV-----RHDMVVDLLAERQQNGPFKSFPDFLSRLPGKYRKVELINALIYAGALDVFP 865 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 ++R +L+ + ++ VE + N + K + + + + + E E Sbjct: 866 FNRSELIAA---APEFISSVELS-----GNSMSLFKALEPKMPKMPEMPLMD---KLEKE 914 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGS 1013 LG Y SGHP + + P+ +++ E+ AT+ NI L + + +T+ G Sbjct: 915 NAYLGAYLSGHPTERFAPLAQRLN----AETTATLSSGMKNIYLILYITKVKIIRTKTGK 970 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 ++ ++ ++ + FP Sbjct: 971 QMAFLDGNDQVGQTSVTVFP 990 >gi|285817385|gb|ADC37872.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981] Length = 1065 Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust. Identities = 335/1028 (32%), Positives = 527/1028 (51%), Gaps = 91/1028 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT TV ++VL +G + L +L S + + + Sbjct: 64 ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSEIKM----NSMENVS 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 LQ+ + +I+ + D F+S + Sbjct: 107 FELLQQFSSNLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 D Y + Q V + V N + + +D + L A+ + + H Sbjct: 140 DTYLDHQSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNAKLDLIHDQEDFGAH 196 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 +L + + E L IA++C+ L+ H +LP++ + D+ K+ + Sbjct: 197 FLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + LE+ Y Y +RL +E VI M F YFLIV+D I +AK N++ Sbjct: 254 VTQLKKLEL---------NYDV--YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDV 302 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR+ VI+ Sbjct: 303 MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ ++L Sbjct: 363 YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ + Sbjct: 421 YQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611 L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFDD + + L Sbjct: 481 L--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFEL 538 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ Sbjct: 539 LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ Sbjct: 599 QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A Sbjct: 659 FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 ++ + + +K + ++A++ I I+PP++N +K IY S+ IKGVG + + Sbjct: 719 LSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778 Query: 852 HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ++D Sbjct: 779 VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835 Query: 911 YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 V N ++ F + K + DK L + + E+ LGFY S H Sbjct: 836 ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQH 885 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAK 1025 P+D +K K Y N + + K +Q +T+ G + +VT ++ + Sbjct: 886 PVD------KKFVAKQYLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAFVTLNDGIE 939 Query: 1026 EYEANFFP 1033 + FP Sbjct: 940 TLDGVIFP 947 >gi|295692868|ref|YP_003601478.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1] gi|295030974|emb|CBL50453.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1] Length = 1035 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 334/1028 (32%), Positives = 541/1028 (52%), Gaps = 52/1028 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL +++++ P + + D N + + F + A AGI+P++G Sbjct: 6 LQNISSFTLLSSPTKVSDLIKDAKEKGYPVVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-C 132 QL ++ G +++ T +GY L+ L S + LL + Q+ ++ Sbjct: 66 QLRLN----------GLVDSTQKYDLLVFAKTNKGYHNLLRLSSAVNLLTENGQNDKVLT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L+ L + + LI++ + A + + + KKL D LY+ + + Sbjct: 116 LNELTKYLDDLLIIVPANLKSEL-MALHDTNQALGSDYVRQLKKLTSD-LYLGVYASKAS 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVTP 250 Y + V LA EL LVA +S +L + L A+A + Q P + Sbjct: 174 IDYIDY-VRGLAKQFELSLVAVEDSQYLRPREQFLQKTLRAIAKGDKL-QDILPLAKQAG 231 Query: 251 DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HYL + ++ + DL +A+ NT +IA++C+ + P+LP++ + D EE Sbjct: 232 SHYLDSAQNVLECYHQYDLDDAINNTWKIAQKCNAEVIFQKPVLPKYHQ---DKFPTSEE 288 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR A GL+ R Q +I +Y++RL++EL VI +M F YFLIV D I + Sbjct: 289 -YLRYLAQTGLQARFGQKSIPA-----EYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS GS+ +Y+L IT++DP++++LLFERFLNP R MPD D+D +R+ Sbjct: 343 RVKITTGPGRGSACGSLVSYSLRITEVDPIQYNLLFERFLNPARHEMPDIDLDIPDIQRN 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+Y+ KYG + AQI+TFG++ AK LRDVGR + ++ + IP + Sbjct: 403 TVIKYMYQKYGMDHAAQILTFGTMAAKQVLRDVGRVFGLTGPEITKWTHAIPYS-KDKME 461 Query: 489 LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ +SR E RL A P L + + LEGL RH S HAAG+VI D ++ + + Sbjct: 462 LKKAYQESR--ELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDDSIAGISGL 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 + +PVTQ K++E GL+K DFLGL+ LT+L L + Q+GVK+D + IP +D Sbjct: 520 -QAGPFGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILALVRQQGVKLDPNTIPLND 578 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T +FQ ES G+R L + PD ED++A+ +LYRPGP+ NI + RK Sbjct: 579 PKTMELFQQGKTDAVFQFESGGIRGVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVARK 638 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK + + Sbjct: 639 NGTATVHYPDPSLKQILQSTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKNQNVI 698 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ +FI+G K G K + ++ + +FA+YGFN+SHA AY I++ A++K HYP Sbjct: 699 EQERGKFIAGTVKKGHPKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPA 758 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F A L K + + A++ ++I+PP +N +D+ + D +I L AIKG+ Sbjct: 759 AFYTA--MLNSSTSAKAQSYSMQAQEAGVRILPPDINHSQLDYTLQDGKILVGLKAIKGL 816 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A+ I A+ KP+ S DF R+D+K L +E+L+ AGA D +R +LL + Sbjct: 817 RLDFAKEI--AANTKPYKSFNDFLRRIDAKFLQVDAIEALIMAGAFDSIEDNRNELLLNC 874 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 ++ Q +N + D L+ ++ + E E++ LGF + Sbjct: 875 KDVIANVQLTGQNMSLSE---------ILGDA-PLKPAEPPTAAQKAEMEEKALGFTTTT 924 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PL + +K + + G ++ ++ +Q +T+ G + + +F++ + Sbjct: 925 TPLIAVQKYAQKFNARPLNQFQLNDSGISV---GKLMKLKQIRTKNGKTMAFASFADTSS 981 Query: 1026 EYEANFFP 1033 E E FP Sbjct: 982 EQEIIIFP 989 >gi|16332330|ref|NP_443058.1| DNA polymerase III subunit alpha [Synechocystis sp. PCC 6803] gi|1653960|dbj|BAA18870.1| DNA polymerase III alpha subunit [Synechocystis sp. PCC 6803] Length = 897 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 300/791 (37%), Positives = 466/791 (58%), Gaps = 59/791 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D+ PAIA+TD ++ A+E + I+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKP 61 Query: 70 IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMYLL 122 IIG ++ DI++ + +Q V+L +GY+ L++L +S + + Sbjct: 62 IIGNEMYVINGDIEINKRHRRFHQ-----------VVLAKNNQGYRNLVKLTTISNLKGI 110 Query: 123 DQGKQSVRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 R C++ L E EGLI+ + G + +A A + +K LFGD Sbjct: 111 QGSGIFARPCINKELLEQYKEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDD 170 Query: 182 LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ +Q H DR +V++A ++ +VATN+S F+S D EAHD L+ + ++ Sbjct: 171 YYLEIQDHGSVEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLI 230 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSD-LPE-----ALENTVEIARRCSFILQVHAPILPR 294 +++ R R + YLK+ EM +F D LP+ A+ NT+E+A + + P +P Sbjct: 231 TEEKRLRYSGTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPH 290 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + E + + A GL RL + Y++RL++EL ++ +M F Sbjct: 291 YPIPP----NHTPETYVEDIAWDGLLERLK--CRERADITPVYKERLEYELRMLEKMGFC 344 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFL+V D+I++A+ + IPVGPGRGS AGS+ AY + IT+IDP+ L+FERFLNP+R S Sbjct: 345 TYFLVVWDYIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKS 404 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD D DFC DRRDE+I YV KYG ++VAQIITF + +KA L+DV R L +PY++ D+ Sbjct: 405 MPDVDTDFCIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDK 464 Query: 475 LCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 + K+IP P L+ + D +F+ +P V + ++++ ++EG + HAA Sbjct: 465 MAKMIPVSRGKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI PL Q+VP+ ++ + +TQ+ M+ +E GL+K DFLGLK LT LQ++++ +A Sbjct: 525 GVVISSEPLDQIVPLQKNNDGAV-ITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVA 583 Query: 591 Q-RGVKVDLSLIPF------------------DDHETYHLLTTKGTL-GIFQLESSGMRQ 630 + +G+++DL +P DD + H L G L GIFQLES GM+Q Sbjct: 584 ETKGIELDLDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQ 643 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 + ++P IEDI ++++LYRPGP+D I ++ NRK+G+E+I H L++P+L ET GV Sbjct: 644 IVRDLKPSGIEDISSILALYRPGPLDAGLIPIFINRKHGREEISYQHKLLEPILNETYGV 703 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 ++YQEQ+M++AQ L+ YSL EAD+LRRAMGKK EEM K + +F+ G++K+G+ IA N Sbjct: 704 LVYQEQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAEN 763 Query: 749 IFELLAKFADY 759 +F+ + KFA+Y Sbjct: 764 LFDQMVKFAEY 774 >gi|253734514|ref|ZP_04868679.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus TCH130] gi|253727568|gb|EES96297.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus TCH130] Length = 1065 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 339/1034 (32%), Positives = 535/1034 (51%), Gaps = 103/1034 (9%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT TV ++VL +G + L +L S I Sbjct: 64 ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSE------------IK 98 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 ++ L+ + E L + + ++ FKK+ GD+ HR Sbjct: 99 MNALEHVSFELL-------------------KRFSNNMIIIFKKV-GDQ-------HRDI 131 Query: 193 DRYRESQVVQLAYTHELPL-------VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 + E+ Y L + V N + + +D + L A+ +T + Sbjct: 132 VQVFETH--NDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHD 189 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 H+L + ++ E L IA++C L+ H +LP++ E D+ K Sbjct: 190 QEDFGAHFLTEKE--INQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQY-ETPNDESAK 246 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + + + LE+ + Y +RL +E VI M F YFLIV+D I Sbjct: 247 KYLWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIH 295 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF Sbjct: 296 YAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDT 355 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+ VI+YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ Sbjct: 356 RRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG- 414 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ Sbjct: 415 -ITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPL 473 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 + L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFD Sbjct: 474 TKGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFD 531 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + + LL+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R Sbjct: 532 DQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITR 591 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ K+ +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + Sbjct: 592 RHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAV 651 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 ++ +++ FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP Sbjct: 652 LESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYP 711 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 F A ++ + + +K + ++A++ I I+PP++N +K IY S+ IKG Sbjct: 712 NYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKG 771 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG + + I+ E + + DF R+ + R++LE+L+ GA D FG +R LLQ Sbjct: 772 VGYQSVKVIVDERYQNGKYKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQ 831 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVL 959 ++D V N ++ F + K + DK L + + E+ L Sbjct: 832 AIDQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYL 878 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFY S HP+D K + K + ++ S A NN + +Q +T+ G + +V Sbjct: 879 GFYVSQHPVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVI 933 Query: 1020 FSEPAKEYEANFFP 1033 ++ + + FP Sbjct: 934 LNDGIETLDGVIFP 947 >gi|283770780|ref|ZP_06343672.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus H19] gi|283460927|gb|EFC08017.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus H19] Length = 1065 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 333/1027 (32%), Positives = 530/1027 (51%), Gaps = 89/1027 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT T+ ++VL G + L +L S++ + + Sbjct: 64 ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSKIKI----NSMENVS 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 LQ+ + +I+ + D F+S + Sbjct: 107 FELLQQFSSNLIIIFKNVADEHRDIVQVFDSHE--------------------------- 139 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 D Y + + V + V N + + +D + L A+ +T + H Sbjct: 140 DTYLDHRSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAH 196 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 +L + + E L IA++C+ L+ H +LP++ + D+ K+ + Sbjct: 197 FLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVL 253 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + LE+ + Y +RL +E VI M F YFLIV+D I +AK N++ Sbjct: 254 VTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDV 302 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR+ VI+ Sbjct: 303 MVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQ 362 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ ++L Sbjct: 363 YVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEA 420 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ + Sbjct: 421 YQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGL 480 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHL 611 L TQ+ M E GL+K DFLGL+ L+++ + L + + G+ +D+ IPFD+ + + L Sbjct: 481 L--TQWTMTEAEHIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVFEL 538 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ Sbjct: 539 LSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKV 598 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ Sbjct: 599 QYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQH 658 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A Sbjct: 659 FIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANI 718 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 ++ + + +K + ++A++ I I+PP++N +K IY S+ IKGVG + + Sbjct: 719 LSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVK 778 Query: 852 HIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ++D Sbjct: 779 VIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ--- 835 Query: 911 YAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 V N ++ F + K + DK L + + E+ LGFY S H Sbjct: 836 ----VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSEH 885 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 P+D K + K + ++ S A NN + +Q +T+ G + +VT ++ + Sbjct: 886 PVD--KMFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIET 940 Query: 1027 YEANFFP 1033 + FP Sbjct: 941 LDGVIFP 947 >gi|227889857|ref|ZP_04007662.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227849721|gb|EEJ59807.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 1038 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 340/1040 (32%), Positives = 537/1040 (51%), Gaps = 69/1040 (6%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 V LQ SS++LLE + N+ + AIA+TD N + ++F + A GI+P++ Sbjct: 4 VSLQNLSSFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIKPLL 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--KQSV 129 G QL I+ G ++++ +GY+ ++ L S + LL + K++V Sbjct: 64 GMQLRIN----------GLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ 187 + +G LI++T + + N+ ++ L + +Y+ + Sbjct: 114 LTFEDLKKYLGH--LILITPSNLHSELKMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVY 171 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246 G Y + + LA LPL A + +L+ + L A+ +T + ++ Sbjct: 172 ADSGQQEYI-NYISSLATQFSLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENIEQLA 230 Query: 247 RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + HYLKN E+ + D+ +ALEN +I + C+ ++ P LP+F + Sbjct: 231 KQAGSHYLKNSEELQVSYRKFDIEDALENAEKIGKICTAEIKFQDPQLPKFKQ------- 283 Query: 305 KEEENELRNKAVAGLEV--RLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 NK E LAQ +AK ++ Q Y++RLD+EL VI M F YFLI Sbjct: 284 --------NKFPTSKEYLHALAQEGLAKRFNNQIPAQYQKRLDYELQVINEMGFDDYFLI 335 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D + +A +I GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R MPD D Sbjct: 336 VWDVMNFAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDID 395 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +D +RRDE+I+Y+ KYG AQI+TFG+L AK L+DV R + + R I Sbjct: 396 LDIPDNRRDEIIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAI 455 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+ +A + + L ++ LE L RH S HAAG+VI D L Sbjct: 456 PHSKGKITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSL 515 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 +++V + +PVTQ +E GL+K DFLGL+ LT+L + L G+ +D + Sbjct: 516 AEIVGLQAGPLG-IPVTQQTKFNVESLGLLKIDFLGLRNLTILGNIVAALRADGIDIDPN 574 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD ET L T +FQ ES G+++ LE + PD EDI+A+ +LYRPGPI+NI Sbjct: 575 QIPLDDQETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNID 634 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + NRK+GKE++ P + +L T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM K Sbjct: 635 HFINRKHGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSK 694 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K E + +++ +FI GA K G K A +++ +A+FA+YGFN+SHA AY+ I++ A+ Sbjct: 695 KNAEVIQRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYF 754 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP F A + M N KI ++ A++ I+I+PP + DF + + +I L Sbjct: 755 KVHYPGAFYLALLNSNMGNRNKIAQYLMQAQEAGIKILPPDIENSKADFSLENGKILVGL 814 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AI+G+ + + I+E +P S+ DF ++D+ L+ +E+L+ AG D +R Sbjct: 815 KAIRGLRSDLLKQILEIK--RPIKSMTDFLWKIDNNLLSAGAVENLIKAGTFDRLAPNRN 872 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQR 957 +LL+ ++ + + N + +F T K+ EK + E S++ E Sbjct: 873 ELLKINKDLVESVKMAGSNLS-----LFE----TLEPKVEEEKMPTAAEKSAMEVE---- 919 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK----KTRKGS 1013 +GF +P+ + RK K + + +G + V K K T+KG Sbjct: 920 AMGFSTGINPIIAVQKYARKFNAKRLQVFESNEQG-------IAVGKLMKVKPITTKKGD 972 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + + FS+ + E + FP Sbjct: 973 NMAFAVFSDTSGERDFTIFP 992 >gi|253732353|ref|ZP_04866518.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253723875|gb|EES92604.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 1065 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 336/1034 (32%), Positives = 537/1034 (51%), Gaps = 103/1034 (9%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT TV ++VL +G + L +L S I Sbjct: 64 ------------MTIYVTNGLNTVETVVL-AKNNDGLKDLYQLSSE------------IK 98 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 ++ L+ + E L + + ++ FKK+ GD+ HR Sbjct: 99 MNALEHVSFELL-------------------KRFSNNMIIIFKKV-GDQ-------HRDI 131 Query: 193 DRYRESQVVQLAYTHELPL-------VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 + E+ Y L + V N + + +D + L A+ +T + Sbjct: 132 VQVFETH--NDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHD 189 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 H+L + ++ E L IA++C L+ H +LP++ E D+ K Sbjct: 190 QEDFGAHFLTEKE--INQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQY-ETPNDESAK 246 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + + + LE+ + Y +RL +E VI M F YFLIV+D I Sbjct: 247 KYLWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIH 295 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF Sbjct: 296 YAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDT 355 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+ VI+YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ Sbjct: 356 RRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG- 414 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ Sbjct: 415 -ITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPL 473 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 + L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPFD Sbjct: 474 TKGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFD 531 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D + + LL+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R Sbjct: 532 DQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITR 591 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ K+ +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + Sbjct: 592 RHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAV 651 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 ++ +++ FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP Sbjct: 652 LESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYP 711 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 F A ++ + + +K + ++A++ I I+PP++N +K IY S+ IKG Sbjct: 712 NYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKG 771 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG + + I+ E + + DF R+ + R++LE+L+ GA D FG +R LLQ Sbjct: 772 VGYQSVKVIVDERYQNGKYKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQ 831 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS----SVRFENEQRVL 959 ++D + +E++ G D +T ++ + ++ + E+ L Sbjct: 832 AIDQVLDGDLNIEQD-------------GLLFDILTPKQMYEDKEELPDALISQYEKEYL 878 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFY S HP+D K + K + ++ S A NN + +Q +T+ G + +V Sbjct: 879 GFYVSQHPVD--KKFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVI 933 Query: 1020 FSEPAKEYEANFFP 1033 ++ + + FP Sbjct: 934 LNDGIETLDGVIFP 947 >gi|268319606|ref|YP_003293262.1| hypothetical protein FI9785_1131 [Lactobacillus johnsonii FI9785] gi|262397981|emb|CAX66995.1| dnaE [Lactobacillus johnsonii FI9785] Length = 1038 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 340/1036 (32%), Positives = 538/1036 (51%), Gaps = 61/1036 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 V LQ SS++LLE + N+ + AIA+TD N + ++F + A GI+P++ Sbjct: 4 VSLQNLSSFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIKPLL 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--KQSV 129 G QL I+ G ++++ +GY+ ++ L S + LL + K++V Sbjct: 64 GMQLRIN----------GLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ 187 + +G LI++T + + N+ ++ L + +Y+ + Sbjct: 114 LTFEDLKKYLGH--LILITPSNLHSELKMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVY 171 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246 G Y + + LA LPL A + +L+ + L A+ +T + ++ Sbjct: 172 ADSGQQEYI-NYIRSLATQFSLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENVEQLA 230 Query: 247 RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + HYLKN E+ + D+ +ALEN +I + C+ ++ P LP+F + Sbjct: 231 KQAGSHYLKNSEELQVSYRKFDIEDALENAEKIGKICTAEIKFQDPQLPKFKQ------- 283 Query: 305 KEEENELRNKAVAGLEV--RLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 NK E LAQ +AK ++ Q Y++RLD+EL VI M F YFLI Sbjct: 284 --------NKFPTSKEYLHALAQEGLAKRFNDQIPAQYQKRLDYELQVINEMGFDNYFLI 335 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D + +A +I GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R MPD D Sbjct: 336 VWDVMNFAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDID 395 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +D +RRDEVI+Y+ KYG AQI+TFG+L AK L+DV R + + R I Sbjct: 396 LDIPDNRRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAI 455 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+ +A + + L ++ LE L RH S HAAG+VI D L Sbjct: 456 PHSKGKITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSL 515 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 +++V + +PVTQ +E GL+K DFLGL+ LT+L + L G+ +D + Sbjct: 516 AEIVGLQAGPLG-IPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIVAALRADGIDIDPN 574 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD ET L T +FQ ES G+++ LE + PD EDI+A+ +LYRPGPI+NI Sbjct: 575 QIPLDDQETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNID 634 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + NRK+GKE++ P + +L T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM K Sbjct: 635 HFINRKHGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSK 694 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K E + +++ +FI GA K G K A +++ +A+FA+YGFN+SHA AY+ I++ A+ Sbjct: 695 KNAEVIQRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYF 754 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP F A + M N KI ++ A++ I+I+PP + DF + + +I L Sbjct: 755 KVHYPGAFYLALLNSNMGNRHKIAQYLMQAQEAGIKILPPDIENSKADFSLENGKILVGL 814 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AI+G+ + + I+E +P S+ DF ++D+ L+ + +L+ AG D +R Sbjct: 815 KAIRGLRSDLLKQILEIK--RPIKSMTDFLWKIDNNLLSADAVGNLIKAGTFDRLAPNRN 872 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQR 957 +LL+ ++ + + N + +F T K+ EK + E S++ E Sbjct: 873 ELLKINKDLVESVKMAGSNLS-----LFE----TLEPKVEEEKMPTAAEKSAMEVE---- 919 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +GF +P+ + RK K + + +G I + ++ K Q T+KG + + Sbjct: 920 AMGFSTGINPIIAVQKYARKFNAKRLQVFESNEQG--IAVGKLMKVK-QITTKKGDNMAF 976 Query: 1018 VTFSEPAKEYEANFFP 1033 FS+ + E + FP Sbjct: 977 AVFSDTSGEKDFTIFP 992 >gi|228982552|ref|ZP_04142811.1| hypothetical protein bthur0002_56850 [Bacillus thuringiensis Bt407] gi|228776735|gb|EEM25043.1| hypothetical protein bthur0002_56850 [Bacillus thuringiensis Bt407] Length = 1237 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 343/1008 (34%), Positives = 539/1008 (53%), Gaps = 78/1008 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V L H+ YSLL+GA ++ ++ A + A AITD ++ L+F +K A +PI Sbjct: 74 YVSLHGHTGYSLLDGATKIH----EMVAKTEWASAITDHGVMYGTLDFYKKMKKANKKPI 129 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + I+ D K +GK +LL A GY+ L++L S + K V+ Sbjct: 130 LGFEAYIETLDGKK---EGKHQ-------LLLAINATGYRNLVKLTSMGFENKYYKPHVK 179 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L WL++ +EG++ + G + +A +A K + +FG + Y+ +QRH Sbjct: 180 --LEWLEKY-SEGVVSTSSCLGGLVPQAIIKGDMDLARKTVQKMIDIFGKENYYIEIQRH 236 Query: 190 RGYDRYRESQVV-----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 E +VV QLA L +AT++S + ED H++L+ + T + + Sbjct: 237 GC----EEEEVVNPALLQLAEEFGLKAIATSDSHYTEIEDASVHEILLCIGTKTTMDDPN 292 Query: 245 RPRVTPD--HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R V P +++ EM +F D+PE L+NT+++A R + +Q+ LP F E + Sbjct: 293 R-MVFPGSGYHIHTSEEMEDLFWDMPELLDNTLDLAERINIDIQLGEIYLPEFPLPEGFE 351 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 Q + L A G R K + +++YR+RL FE+ I M F GYF+IV D Sbjct: 352 SQADYFEHL---AWEGFAKRFKG---QKEFKSKEYRERLTFEIETIKTMGFPGYFVIVWD 405 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI++AK+ I VGPGRGS GS+ AYAL ITDIDP+ + L+FERFLNPDR+SMPD DIDF Sbjct: 406 FIRFAKERGILVGPGRGSACGSLVAYALDITDIDPIPYGLIFERFLNPDRISMPDIDIDF 465 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 RR+EVI YV+ YG E V++IITFG+L AK ++RDV R L P + + IP Sbjct: 466 EDTRREEVIDYVKELYGEEAVSRIITFGTLAAKVSVRDVARVLDKPLGNM--IANAIPEK 523 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P ++ +A+ + F +D V +++I+ ++EGL R+ S HA G++I ++ Sbjct: 524 PGMTLN-KALNESPEFYNMYHSDAEVKEIVDIALRIEGLPRNVSQHACGVIIAPSAVTDH 582 Query: 543 VPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQR---GV 594 +P D + TQ+N E+ GL+K DFLGL+T+ ++ ++ +D +R G+ Sbjct: 583 IPQVLLENTDTGAYEHTTQYNKDECEEMGLLKMDFLGLRTMGVMGRAFIDINKKRKELGL 642 Query: 595 K-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC-----------IED 642 + + L IP DD Y + T G+FQLES+GM + + D E Sbjct: 643 EPITLESIPLDDIRVYEYIAKGNTAGVFQLESAGMTNFMMELFQDAHTLDAEMGKQLFER 702 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 +IA +SLYRPGP+D I Y E I P + P+L+ T +I+YQEQ M I + L Sbjct: 703 LIAGISLYRPGPLDEIPNYIKNMLKPEGIEYDVPQLQPILETTYNIIVYQEQCMFIVREL 762 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLA 754 + ++ ++D +R+ M KK++ +++ E F I+G NGI + IA+ ++E + Sbjct: 763 ANFTRGQSDTIRKGMAKKVEALLNEYGEYFVHGSEEKGITGCVANGIDEHIAIALWERMK 822 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 KF Y FNKSHA YA I+ +T ++ +YP E++ A++ + +KIK + +++ I Sbjct: 823 KFGRYAFNKSHATGYANIAIKTGFLAYYYPTEYMCATLNSFITMSDKIKAYMAVSKRQKI 882 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 ++PP VN F V N I + L I+ +G + R I E F + +D R+ Sbjct: 883 DVLPPDVNKSREVFTVEGNSIRFGLQGIRNMGKISIRLIEERDTRGDFRNFQDCAVRMAK 942 Query: 875 -KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 +K++RRVLE+L+F+GA+D F +R L LD + A K+ + +IF + Sbjct: 943 YQKVDRRVLEALIFSGAVDSFEGTRNSKLMMLDALLLVASQERKDYQSGQLSIFDIPLLS 1002 Query: 934 FSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 DKI TL +F+++ + E E+ GFY S HPLD Y+ +L Sbjct: 1003 -QDKIREVLTPTLTEFNID---FKLEKEKEFAGFYISAHPLDSYETLL 1046 >gi|320527694|ref|ZP_08028866.1| putative DNA polymerase III DnaE [Solobacterium moorei F0204] gi|320131937|gb|EFW24495.1| putative DNA polymerase III DnaE [Solobacterium moorei F0204] Length = 1021 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 342/1027 (33%), Positives = 534/1027 (51%), Gaps = 52/1027 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 HL V S Y+LL+ + + ++ ++A+TD + + F + GI PII Sbjct: 3 THLFVRSCYTLLDSTIRIPELVSTAKKYGYQSVALTDHHVMHGVARFLHECKKEGIHPII 62 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G ++D+ ++ K PF +LL +GY L++L S +L G++ V Sbjct: 63 GLEVDV-------FYHEQKVPF------LLLAKNNKGYTNLMKLSS---MLCDGREYV-- 104 Query: 132 CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 ++ + I E ++ G G D ++L K F Sbjct: 105 --TYEELIQYCEHNFLVVYGEGGYFDAELISEDRTGITQKLALMKSEFPPFDIAISYEET 162 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 R + + + LA + +A N +L ++DYE VL A+ T + K+ +T Sbjct: 163 SLWRSKNAVLKALAKAQGIQTIALNKIYYLGQKDYETLKVLSAIKQGTTLRDKNVTPITG 222 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 ++L + EM I+ + L T EIA C + +P + K D I E+ Sbjct: 223 RYFL-SIPEMEQIYD--ADDLRRTDEIASECHCDGNLEKTGIPEYPLK--DGITAEQY-- 275 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 L +AGL+ RL G Y +RL +EL VI +M F YFLIV DFI++ ++ Sbjct: 276 LPQLCLAGLKKRL------NGDLKPAYVERLKYELQVIHQMGFEDYFLIVYDFIRYGRQK 329 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 I +GPGRGS AGS+ AY L IT +DPL+++LLFERFLN +R+SMPD D D R E+ Sbjct: 330 GIYIGPGRGSAAGSLVAYCLGITMVDPLQYNLLFERFLNAERVSMPDIDTDIPDIHRQEI 389 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I YV KYG + +A IITF +L ++A LRDVG+A+ +P ++D + LIP P + + Sbjct: 390 IDYVYQKYGEQHIANIITFDTLASRAVLRDVGKAMDIPKREIDMIVGLIPQTPKITLK-K 448 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A + R A P + +++++EGL ++ S HAAGIV+ +P+ +++P + + Sbjct: 449 AYEQKEKLRVLLNASPQLMTYFNMAKRIEGLPKNKSIHAAGIVMSGKPIEEIIPTIQ-MA 507 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610 + TQF ++E+ GLIK DFLGLK LT + + + + ++ + IP D +TY Sbjct: 508 EGMKTTQFVGNYLEERGLIKMDFLGLKNLTTIDEIVQMIHKKNPDFHILSIPLHDAKTYR 567 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670 L T+G+FQ ES GMR L M+P+C EDIIA ++L+RPGP D I VY + Sbjct: 568 LFAQADTIGVFQFESDGMRNLLRKMKPNCFEDIIAALALFRPGPKDQINVYLEGRKNPSS 627 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 +V ++P+LKET GV IYQEQVM +AQ+ + +SL +AD+LR+A+ KK +EE+ ++ Sbjct: 628 VVYPSKELEPILKETYGVTIYQEQVMLMAQIAAKFSLVKADILRKAISKKNEEELAGLRQ 687 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 ++ G +NG S +A +F+L KFA YGFNKSHA AY +++YQ A++K +YP+EF + Sbjct: 688 EYVRGCKENGYSDEMASYLFDLAEKFAGYGFNKSHAVAYGLVAYQLAYLKANYPLEFYTS 747 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850 + + + K + + R+ +I I P VN + I L+ IK VGT A Sbjct: 748 ILNSVIGDSTKSAIYITECRRKHISIEAPDVNRSTDIYYHNGKSIILPLSIIKDVGTLAA 807 Query: 851 RHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 R I++ K F DF +R +K+NR LE L+ AGALD F R ++ +LD+ Sbjct: 808 RTILDERDKKGSFGDYFDFVARAVLRKINRTQLERLISAGALDGFDLGRTTMMNTLDDAV 867 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPL 968 KYA+ V+ + + + S + + K S E S ENE+ LGF P+ Sbjct: 868 KYAKLVQVPFGTQ----LSIDPQLVSKPVVVRMKDSQEELS---ENEKAALGFNLGEQPI 920 Query: 969 DVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 + +K+GI +A + N R A + S +Q +TRKG + ++ ++ E Sbjct: 921 ---VHLRQKLGIT--YPPLAELNSNRGLYRGFAYIQSVRQIRTRKGDLMCFLKLTDETGE 975 Query: 1027 YEANFFP 1033 + P Sbjct: 976 SDMAVMP 982 >gi|227879083|ref|ZP_03996972.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256843072|ref|ZP_05548560.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|256850276|ref|ZP_05555705.1| DNA polymerase III alpha-chain [Lactobacillus crispatus MV-1A-US] gi|262046332|ref|ZP_06019294.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] gi|293381286|ref|ZP_06627289.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 214-1] gi|312977257|ref|ZP_07789005.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus CTV-05] gi|227861324|gb|EEJ68954.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256614492|gb|EEU19693.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|256712913|gb|EEU27905.1| DNA polymerase III alpha-chain [Lactobacillus crispatus MV-1A-US] gi|260573203|gb|EEX29761.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] gi|290922102|gb|EFD99101.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 214-1] gi|310895688|gb|EFQ44754.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus CTV-05] Length = 1035 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 334/1028 (32%), Positives = 541/1028 (52%), Gaps = 52/1028 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL +++++ P + + D N + + F + A AGI+P++G Sbjct: 6 LQNISSFTLLSSPTKVSDLIKDAKEKGYPVVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI-C 132 QL ++ G +++ T +GY L+ L S + LL + Q+ ++ Sbjct: 66 QLRLN----------GLVDSTQKYDLLVFAKTNKGYHNLLRLSSAVNLLTENGQNDKVLT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L+ L + + LI++ + A + + + KKL D LY+ + + Sbjct: 116 LNELTKYLDDLLIIVPANLKSEL-MALHDTNQALGSDYVRQLKKLTFD-LYLGVYASKAS 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--RVTP 250 Y + V LA EL LVA +S +L + L A+A + Q P + Sbjct: 174 IDYIDY-VRGLAKQFELSLVAVEDSQYLRPREQFLQKTLRAIAKGDKL-QDILPLAKQAG 231 Query: 251 DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 HYL + ++ + DL +A+ NT +IA++C+ + P+LP++ + D EE Sbjct: 232 SHYLDSAQNVLERYHQYDLDDAINNTWKIAQKCNAEVIFQKPVLPKYHQ---DKFPTSEE 288 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR A GL+ R Q +I +Y++RL++EL VI +M F YFLIV D I + Sbjct: 289 -YLRYLAQTGLQARFGQKSIPA-----EYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 342 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS GS+ +Y+L IT++DP++++LLFERFLNP R MPD D+D +R+ Sbjct: 343 RVKITTGPGRGSACGSLVSYSLRITEVDPIQYNLLFERFLNPARHEMPDIDLDIPDIQRN 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+Y+ KYG + AQI+TFG++ AK LRDVGR + ++ + IP + Sbjct: 403 TVIKYMYQKYGMDHAAQILTFGTMAAKQVLRDVGRVFGLTGPEITKWTHAIPYS-KDKMG 461 Query: 489 LQAIADDSRFREARL---ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ +SR E RL A P L + + LEGL RH S HAAG+VI D ++ + + Sbjct: 462 LKKAYQESR--ELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDDSIAGISGL 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 + +PVTQ K++E GL+K DFLGL+ LT+L L + Q+GVK+D + IP +D Sbjct: 520 -QAGPFGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILALVRQQGVKLDPNTIPLND 578 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T +FQ ES G+R L + PD ED++A+ +LYRPGP+ NI + RK Sbjct: 579 PKTMELFQQGKTDAVFQFESGGIRGVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVARK 638 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK + + Sbjct: 639 NGTATVHYPDPSLKQILQSTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKNQNVI 698 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++ +FI+G K G K + ++ + +FA+YGFN+SHA AY I++ A++K HYP Sbjct: 699 EQERGKFIAGTVKKGHPKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPA 758 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F A L K + + A++ ++I+PP +N +D+ + D +I L AIKG+ Sbjct: 759 AFYTA--MLNSSTSAKAQSYSMQAQEAGVRILPPDINHSQLDYTLQDGKILVGLKAIKGL 816 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A+ I A+ KP+ S DF R+D+K L +E+L+ AGA D +R +LL + Sbjct: 817 RLDFAKEI--AANTKPYKSFNDFLRRIDAKFLQVDAIEALIMAGAFDSIEDNRNELLLNC 874 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 ++ Q +N + D L+ ++ + E E++ LGF + Sbjct: 875 KDVIANVQLTGQNMSLSE---------ILGDA-PLKPAEPPTAAQKAEMEEKALGFTTTT 924 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PL + +K + + G ++ ++ +Q +T+ G + + +F++ + Sbjct: 925 TPLIAVQKYAQKFNARPLNQFQLNDSGISV---GKLMKLKQIRTKNGKTMAFASFADTSS 981 Query: 1026 EYEANFFP 1033 E E FP Sbjct: 982 EQEIIIFP 989 >gi|298492518|ref|YP_003722695.1| DNA polymerase III subunit alpha ['Nostoc azollae' 0708] gi|298234436|gb|ADI65572.1| DNA polymerase III, alpha subunit ['Nostoc azollae' 0708] Length = 877 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 311/820 (37%), Positives = 471/820 (57%), Gaps = 80/820 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D+ AIA+TD ++ A+E + + I+P Sbjct: 2 SFVPLHIHSDYSLLDGASQLPELVDQAITLGMKAIALTDHGVMYGAVELIKVCRSKNIKP 61 Query: 70 IIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 IIG ++ DI+ Q+ +Q V+L +GY+ L++L + +L Q Sbjct: 62 IIGNEMYIINGDIEKQERRPKYHQ-----------VVLAKNTKGYRNLVKLTTISHL--Q 108 Query: 125 GKQS----VRICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 G Q R C++ L+E EGLI+ + G I +A A K +K++F Sbjct: 109 GVQGKGIFSRPCINKNSLKEY-KEGLIVTSACLGGEIPQAILSKRPDAARKVAKWYKEVF 167 Query: 179 GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 G+ Y+ +Q H DR ++V++A + +ATN+S ++S D EAHD L+ + Sbjct: 168 GEDFYLEIQDHGSQEDRIVNVEIVKIARELGIKFIATNDSHYISCFDVEAHDALLCIQTG 227 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LP-----EALENTVEIARRCSFILQVHAPI 291 ++S+ R R + YLK+ EM +F D LP EA+ T E+ + + P Sbjct: 228 QLISEDKRMRYSGTEYLKSAQEMQQLFRDHLPDYVIAEAIATTEEVGDKIEPYHIMDEPK 287 Query: 292 LPR--FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P D EE A GL RL + + + Q Y++RL++EL ++ Sbjct: 288 IPTPPIPSGHTPDTYAEE------IAWQGLLERLNRKS--RSEVDQIYKERLEYELKMLQ 339 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 RM FS YFL+V D+I++A+ NNIPVGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLN Sbjct: 340 RMGFSTYFLVVWDYIKFARDNNIPVGPGRGSAAGSLVAYAMRITNIDPVHHGLLFERFLN 399 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R SMPD D DFC ++RD+VI YV NKYG +RVAQIITF L +KA L+DV R L +PY Sbjct: 400 PERKSMPDIDTDFCIEKRDQVIEYVTNKYGADRVAQIITFNRLTSKAVLKDVARVLDIPY 459 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRHA 525 + D++ K+IP P L+ + + F+E D + L+++ ++EG + Sbjct: 460 GEADKMAKMIPVVRGKPTKLKVMVSNETPAPEFKEKYDHDAKIRHWLDMAMRIEGTNKTF 519 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 HAAG+VI PL ++VP+ R+ + +TQ+ M+ +E GL+K DFLGL+ LTL+QK+ Sbjct: 520 GVHAAGVVISAEPLDEIVPLQRNNDGSV-ITQYFMEDLESLGLLKMDFLGLRNLTLIQKT 578 Query: 586 LDFLAQ-RGVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQLES 625 +D + + G K+D S +P + + Y LL + G+FQLES Sbjct: 579 IDLIQETNGYKIDPDEITGQERKAQHILAKGQHSTLPKEVQKAYSLLESGDLEGVFQLES 638 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683 SGM+Q + ++P IEDI ++++LYRPGP+D ++ + NRK+ +E+I +++P+L Sbjct: 639 SGMKQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHRREEIEYETGILEPILN 698 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQ+M+IAQ ++GYSL +AD+LRRAMGKK EM KQ+E+FI GA KNG+ K Sbjct: 699 ETYGIMVYQEQIMKIAQDMAGYSLGQADLLRRAMGKKKVSEMQKQEEKFIDGAMKNGVKK 758 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +A +F + KFA+Y +SY+T + Y Sbjct: 759 QVAEKLFADMLKFAEY-----------CLSYKTEVLTVEY 787 >gi|90961842|ref|YP_535758.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118] gi|90821036|gb|ABD99675.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118] Length = 1097 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 343/1041 (32%), Positives = 548/1041 (52%), Gaps = 79/1041 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQV SSYSLL+ L ++ + A+ +TD N+++ L+F + AGI+PI Sbjct: 2 YAPLQVLSSYSLLQSPLRISEYVKLGKELGYSALVLTDINSMYGVLDFYHECVKAGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGKQSV 129 IG L G + + + + GYQ L+ + S R+ +D+ +++ Sbjct: 62 IGITL-----------QSGDDEY------IFIAKNSNGYQNLMNISSKRLTAVDENYKNI 104 Query: 130 ---RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 +LQ++ I++ S ++ S QV E + L + +Y + Sbjct: 105 FKLTDITEYLQDV-----IVILNPSYLTVNDII---SDQVTELQTLVSA---AETIYYGV 153 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + DR + + A +L + +L E DY + VL A+ V+ Sbjct: 154 NPN---DRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNWNF 210 Query: 247 RVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +YL E + +D L A +N + + +C+ L LP F KE + + Sbjct: 211 K-NDGNYLHTPEEYGRLGTDYLSNAYQNAINVIAQCNLTLNFPKTQLPHF--KETNGLSS 267 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E LR GL R+A+ I + ++Y+ RLD+EL+VI RM F YFLIV D Sbjct: 268 EAF--LRKLCQEGLAKRIAEENIK---NQEEYQNRLDYELSVIHRMGFDDYFLIVWDVTN 322 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A +NNI GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R MPD D+D Sbjct: 323 FAHENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDI 382 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 +RD +I Y+ KYG + +AQIITFG+L+ K LRDV R + + D K IP + + Sbjct: 383 KRDTIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKE--Y 440 Query: 486 PVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 ++L+ S+ + +AD S +RLL E + LEGL RH STHAAGI++ D L VP Sbjct: 441 GITLKEAYASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLVDHVP 500 Query: 545 MYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--I 601 + + D + ++QF +E+ GL+K DFLGL+ L++L+ ++ L ++G +D + I Sbjct: 501 V--QIGGDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTIT-LIKKGYHIDFDIRKI 557 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 DD ET + T GIFQ ES+G+R L ++P ED+ A+ +LYRPGPI NI + Sbjct: 558 NLDDPETLKIYQNAETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEF 617 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+G+ I ++ +LK+T G+++YQEQVMQ+A + G++L +AD LRRAM KK Sbjct: 618 IARKHGERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKK 677 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 + + + + FI+GA K G + +A ++ + +F DYGFN+SHA AY+ +S++ A++K Sbjct: 678 HDIISRMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKA 737 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP F AA + + N K K + +A+ +++ P +N + + + IY+ L+ Sbjct: 738 HYPAAFFAALLNSVIGNPRKTKDYVLEAKNKGVKVHHPDINISQSLYILRNGGIYFGLSC 797 Query: 842 IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK + + I+ E F ++EDF R+D + L R ++E L+++G D FG SR + Sbjct: 798 IKSLRKNFLQDILQERKRSGIFKNMEDFLQRIDKRYLKRELIEILIYSGVFDTFGQSRKE 857 Query: 901 LL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 LL + L NI+ VE +I A + K T+EK + N + E E Sbjct: 858 LLAMLPRLLSNIELSGNNVEL------FSILAPK------KTTVEKIEISNDEL-LEKEN 904 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKK---TRKG 1012 LG Y SGHP++ Y ++ V+ I N + +M++ + K T+ G Sbjct: 905 YYLGAYLSGHPVEKYAELIYLTN----STRVSQINESNKDKYVSMILQIKVIKIIRTKNG 960 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 S++ +VT ++ + FFP Sbjct: 961 SQMAFVTAADQTGNMDLTFFP 981 >gi|227890867|ref|ZP_04008672.1| DNA polymerase III alpha subunit [Lactobacillus salivarius ATCC 11741] gi|227867276|gb|EEJ74697.1| DNA polymerase III alpha subunit [Lactobacillus salivarius ATCC 11741] Length = 1109 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 342/1043 (32%), Positives = 549/1043 (52%), Gaps = 73/1043 (6%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 E+ + LQV SSYSLL+ L ++ + A+ +TD N+++ L+F + A Sbjct: 9 ERYYMYAPLQVLSSYSLLQSPLRISEYVKLGKELGYSALVLTDINSMYGVLDFYHECVKA 68 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQ 124 GI+PIIG L + + + + GYQ L+ + S R+ +D+ Sbjct: 69 GIKPIIGITLQ-----------------SSDDEYIFIAKNSNGYQNLMNISSKRLTAVDE 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 +++ L+ + E + +++L D S QV E + L + +Y Sbjct: 112 NYKNI-FKLTDITEYLQDVIVVLNPSYLTVND----IISDQVTELQTLVSA---AETIYY 163 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + + DR + + A +L + +L E DY + VL A+ V+ Sbjct: 164 GVNPN---DRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNW 220 Query: 245 RPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + +YL E + +D L A +N + + +C+ L LP F KE + + Sbjct: 221 NFK-NDGNYLHTPEEYERLGTDYLSSAYQNAINVIAQCNLTLNFPKTQLPHF--KETNGL 277 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ LR GL R+A+ I + ++Y+ RLD+EL+VI RM F YFLIV D Sbjct: 278 NSEDF--LRKLCQEGLAKRIAEENIK---NQEEYQNRLDYELSVIHRMGFDDYFLIVWDV 332 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 +A +NNI GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R MPD D+D Sbjct: 333 TNFAHENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIP 392 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RD +I Y+ KYG + +AQIITFG+L+ K LRDV R + + D K IP + Sbjct: 393 DIKRDTIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKE- 451 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + ++L+ S+ + +AD S +RLL E + LEGL RH STHAAGI++ D L Sbjct: 452 -YGITLKEAYASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLVDH 510 Query: 543 VPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL- 600 VP+ + D + ++QF +E+ GL+K DFLGL+ L++L+ ++ L ++G +D + Sbjct: 511 VPV--QIGGDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTIT-LIKKGYHIDFDIR 567 Query: 601 -IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I DD ET + T GIFQ ES+G+R L ++P ED+ A+ +LYRPGPI NI Sbjct: 568 KINLDDPETLKIYQNAETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNID 627 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK+G+ I ++ +LK+T G+++YQEQVMQ+A + G++L +AD LRRAM K Sbjct: 628 EFIARKHGERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSK 687 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + + + + FI+GA K G + +A ++ + +F DYGFN+SHA AY+ +S++ A++ Sbjct: 688 KKHDIISRMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYI 747 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP F AA + + N K K + +A+ +++ P +N + + + IY+ L Sbjct: 748 KAHYPAAFFAALLNSVIGNPRKTKDYVLEAKNKGVKVHHPDINISQSLYILRNGEIYFGL 807 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 + IK + + I+ E F ++EDF R++ + L R ++E L+++G D FG SR Sbjct: 808 SCIKSLRKNFLQDILQERKRSGIFKNMEDFLQRINKRYLKRELIEILIYSGVFDTFGQSR 867 Query: 899 MQLL----QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +LL + L NI+ VE +I A + K T+EK + N + E Sbjct: 868 KELLAMLPRLLSNIELSGNNVEL------FSILAPK------KTTVEKIEISNDEL-LEK 914 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKK---TR 1010 E LG Y SGHP++ Y ++ V+ I N + +M++ + K T+ Sbjct: 915 ENYYLGAYLSGHPVEKYVELIYLTN----STRVSQINESNKDKYVSMILQIKVIKIIRTK 970 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 GS++ +VT ++ + FFP Sbjct: 971 NGSQMAFVTAADQTGNMDLTFFP 993 >gi|323342047|ref|ZP_08082280.1| DNA-directed DNA polymerase III alpha subunit [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464472|gb|EFY09665.1| DNA-directed DNA polymerase III alpha subunit [Erysipelothrix rhusiopathiae ATCC 19414] Length = 1030 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 348/1036 (33%), Positives = 546/1036 (52%), Gaps = 78/1036 (7%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL V S YSLL+G + + I +K ++ +IA+TD + LF AL+F A I+PI G Sbjct: 13 HLMVRSHYSLLKGMMPVELICEKAKHNESKSIALTDRHVLFGALDFYDAARKHHIKPIYG 72 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 ++ I ++D + ++L T EGYQ LI L YLL S + Sbjct: 73 MEITI-LEDE------------SYYDSLVLARTNEGYQGLIHL---SYLL-----SKQAY 111 Query: 133 LSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190 +S + E LI + GP ++ + + KK+F Y+ L + Sbjct: 112 ISEADVVPFESELIFIAYSEQGPFEKGMLSKNLDEVANTMERLKKMFS-YFYIGLSHQES 170 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 G+ Q+ Q+A E+ VA + +++D EA L A+ ST + K +P Sbjct: 171 GFFSNVNDQLRQMAVLREIECVALPKVYYENKDDEEAFRALQAIDKSTYLEDKTLVS-SP 229 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 + + + ++++ +L +T IA C+ + LP F E E Sbjct: 230 NRNFISDDDFKVLYTEAELSLTDT--IAEMCNVSIMNLKTELPEF----------ETHQE 277 Query: 311 LRNKAVA------GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + NK GL+ RL K YR+RL++EL +I M F+ YFLIV D I Sbjct: 278 VSNKVFLEQLSHFGLKRRLNNSVPEK------YRERLNYELKIINEMNFTDYFLIVYDVI 331 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++AKK I VGPGRGS AGS+ AY L I +IDP+ + LLFERFLNP+R+SMPD DIDF Sbjct: 332 RYAKKAGIYVGPGRGSSAGSLVAYCLGIVEIDPIEYDLLFERFLNPERVSMPDIDIDFPD 391 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D+R VI YV+NKYG + VA I+TFG+L+A+ A RD R LQ+P +VD++ KLI DP Sbjct: 392 DKRQYVIDYVRNKYGDDYVAHIVTFGTLKARQAFRDTARVLQVPIRKVDQVSKLI--DPM 449 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +SRF+ ++ + + E++ K+EG+ RH STHAAGIV+ +PL +VP Sbjct: 450 MGLR-DNYNKNSRFKSLIQSEDLLKKTFELACKIEGMPRHTSTHAAGIVLSKKPLDVVVP 508 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + + + S+ Q+ M +E GL+K DFLGL+ LT++ ++ D+ IP D Sbjct: 509 VIQ-LDSETKAVQYEMSHLESIGLVKIDFLGLRNLTIID-NISRQINESEAFDIMSIPLD 566 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY L++ T+G+FQLES GM+ L+ ++P DI+ V+L+RPGP++NI +Y Sbjct: 567 DQKTYELISRAETVGVFQLESDGMKALLKKVKPHKFSDIVDTVALFRPGPMENIPLYLEN 626 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ EK+ IH + + + T G++IYQEQ+MQ+AQ+++G+SL+ AD+LR+AMGKK +E Sbjct: 627 RDHPEKVKYIHDDLKRITESTNGILIYQEQIMQVAQIMAGFSLARADILRKAMGKKNAKE 686 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D K FI G G +T A +F L+ KFA+YGFNKSH+ AY +I+YQ +++K +YP Sbjct: 687 LDGLKTEFIQGCIDKGHKETFAEELFSLIYKFANYGFNKSHSVAYGLIAYQLSYLKANYP 746 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 F +T + + K +++ + R+ + + P ++ + + I IKG Sbjct: 747 HLFYTYLLTSVIGSEVKTRQYIDECRRRKVDLRPVNLEQSRNSYTLEGYAIRLPFTVIKG 806 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + + I E + P+ + + SR++ + + E L+ AGA D R+ ++ Sbjct: 807 ISKSIGTKIQNEVHDNGPYLNYYNAISRLNLVGIKKNQFELLIQAGAFDYLNSDRLSMIA 866 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--ENSSVRFENEQRVLGF 961 SL+ +YA + + + D I+ F+V EN +E VLGF Sbjct: 867 SLEEALRYANIIRVEKDG--------QSSLNMDLISEPIFTVVSENRRQVLNDELVVLGF 918 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 YFS HP + +K ES + I R R+ AMV + +T+KG ++ + Sbjct: 919 YFSEHP---------TLRLKKKHESDSLIEVKVRDKYFRIIAMVDRIKLHRTKKGDQMAF 969 Query: 1018 VTFSEPAKEYEANFFP 1033 + S+ + FP Sbjct: 970 IQLSDDTGLIDGVVFP 985 >gi|303233203|ref|ZP_07319876.1| putative DNA polymerase III subunit alpha [Atopobium vaginae PB189-T1-4] gi|302480788|gb|EFL43875.1| putative DNA polymerase III subunit alpha [Atopobium vaginae PB189-T1-4] Length = 1302 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 337/1019 (33%), Positives = 519/1019 (50%), Gaps = 100/1019 (9%) Query: 67 IQPIIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR-----M 119 I PI GC++++ + D+ + T Q + P LLV +GY L++LVS M Sbjct: 125 ITPIFGCEVNL-IPDSCIERGTTQTRYHLP------LLVKNNQGYHNLMKLVSEASNKMM 177 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Y R+ L L+ EGLI L+G G I R ++ AE + +FG Sbjct: 178 YY------RPRVTLDMLRTY-HEGLICLSGCYQGVIARMVVQHAMDEAEGWARALQDIFG 230 Query: 180 DRLYVNLQRHR----GYDRYRESQVVQLAYTHELPL----VATNNSLFLSEEDYEAHDVL 231 D Y+ LQ H + E+ + Y L VATN++ + S +D E D+L Sbjct: 231 DDFYLELQDHNISLDSWGGMTETDIAHTIYDMGKKLGIATVATNDNHYFSRDDVETRDLL 290 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QV 287 ++ T + + + + ++Y+K + EM S+FS P+A+E T IA++C+F L + Sbjct: 291 SCISAGTHLDESYQTTLPGSEYYMKTQEEMSSLFSWAPDAIEQTYAIAQKCNFELDWTNM 350 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 + P P E E E+ R + AGL + + + + ++R ++E V Sbjct: 351 YLPKFPGLREGE------SSEDRFRAECEAGLARKYGKDWEHTVINGVNVKERFEYEYGV 404 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I F+ YFLIV ++++WAK++ I VGPGRGS AG++ AYA+ IT DPL L+FERF Sbjct: 405 ICFKGFADYFLIVQEYVRWAKEHGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERF 464 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 L+P+R MPD D+DF +RR EV+++V+ YG ERV +IT+ +++AK A+ D R L Sbjct: 465 LSPERTEMPDIDMDFDDERRLEVVQHVRELYGSERVCHVITYSTIKAKQAINDAARVLNY 524 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSR-------FREARLADPSVDRLLEISQKLEG 520 P S +L K+I NDP +S D + F + + R+++ ++ +EG Sbjct: 525 PVSLGQKLSKMISNDPKVKLSYVLEKTDGKEDMYNPDFLKEYETNADERRIIDAARAIEG 584 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HA ++I P++ VP D + + +TQ+ + GL+K DFLGL+TLT Sbjct: 585 LTRGEGVHACAVLIAPTPVNDHVPTKLDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLT 644 Query: 581 LLQKSLDFLAQR-----------------------GVKVDLSLIPFDDHETYHLLTTKGT 617 ++ K+L+ + R + +D + I F D Y LL++ T Sbjct: 645 VISKTLENIRTRYPDLSLIDTFSPTVKAALKEGATSIDIDPAKIDFSDPAIYKLLSSGHT 704 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIH 675 G+FQ+ES GM ++ M+P I+AL++LYRPGP+ +V Y NR NG+E +V Sbjct: 705 AGVFQVESEGMTATIKNMKPREFRQIVALIALYRPGPLGAGMVTSYINRMNGREPVVFYD 764 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV-LRRAMGKK---------IKEEM 725 + +L ET G I+YQEQVMQI+ +SG+S E+D +R+ + KK E Sbjct: 765 DRLSEILDETYGTIVYQEQVMQISVKMSGFSKGESDSRIRKPVAKKKIALLTSTIFHWEN 824 Query: 726 DKQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 K + + ++ GA NG + +A I++ + +FA Y FNKSH+A YA++ QTAW+K H Sbjct: 825 GKDETTYDHWMGGAKANGYKEDVAQKIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAH 884 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 +P E++A+ +T M +KI + I I+PP +N DF + + A I Sbjct: 885 FPREYMASVLTSYMGKTDKITHYISACHHEGIDILPPDINESRRDFTATAQGVRFGFAGI 944 Query: 843 KGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 +GVG IM+ AD PF L DF +R DS NRRV+E+L+ AGA D GY R QL Sbjct: 945 RGVGEQVGEAIMQERADHGPFLHLHDFVNRSDSACANRRVVEALIKAGAFDASGYPRCQL 1004 Query: 902 LQSLD-----NIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI-TLEKFSVENSSVR 951 + +D NI A +K+R+ ++F E F I ++ + Sbjct: 1005 MGFVDKNNPKNILDSAAKQQKSRSMGQLSLFDLYGNVEGSGFEQHIPPIDPNDSWDQGFM 1064 Query: 952 FENEQRVLGFYFSGHPLDVYKPIL---RKMGIKGYEES--VATIRGNNIRLAAMVVSKQ 1005 E+ VLG Y S HPL Y + R + I EE+ V G+ +RL V Q Sbjct: 1065 LAQEREVLGIYVSDHPLRPYHVAVERSRDVSISQLEETREVHDEDGSLLRLEYTVADHQ 1123 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58 FVHL HS +S+L+ A S+ ++ PA+A+TD +F +F Sbjct: 3 FVHLHNHSQFSILDAATSIQRMVKAAVERHMPALALTDHEYMFGVPDF 50 >gi|323440753|gb|EGA98462.1| DNA polymerase III alpha subunit [Staphylococcus aureus O11] Length = 1065 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 336/1040 (32%), Positives = 534/1040 (51%), Gaps = 115/1040 (11%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT T+ ++VL G + L +L S+ I Sbjct: 64 ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSK------------IK 98 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 ++ ++ + E L Q + ++ FK + HRG Sbjct: 99 MNSIENVSFELL-------------------QQFSSNLIIIFKNV--------ADEHRG- 130 Query: 193 DRYRESQVVQLAYTHE-------------LPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 +VQ+ +HE + V + + +D + L A+ +T Sbjct: 131 -------IVQVFDSHEDTYLDHRSVLVQGIKHVWIQTVCYQTPQDADTISALAAIRDNTK 183 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + H+L + + E L IA++C+ L+ H +LP++ + Sbjct: 184 LDLIHDQEDFGAHFLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTP 240 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D+ K+ + + LE+ + Y +RL +E VI M F YFLI Sbjct: 241 NDESAKKYLWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLI 289 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V+D I +AK N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD D Sbjct: 290 VSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDID 349 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDF RR+ VI+YVQ KYG V+ I+TFG L A+A RDVGR + ++ + +I Sbjct: 350 IDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSVI 409 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+ ++L F++ + +R I +KLEGL RH STHAAGI+I D PL Sbjct: 410 PHKLG--ITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPL 467 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 + P+ + L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ Sbjct: 468 YEYAPLTKGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDI 525 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IPFDD + + LL+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Sbjct: 526 EKIPFDDQKVFDLLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEI 585 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y R++ K+ +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM Sbjct: 586 PTYITRRHDPSKVQYLHPYLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMS 645 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK + ++ +++ FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y ++ Sbjct: 646 KKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSF 705 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYP F A ++ + + +K + ++A++ I I+PP++N +K IY S Sbjct: 706 LKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSKEGIYLS 765 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 + IKGVG + + I+ E + F DF R+ + R++LE+L+ GA D FG + Sbjct: 766 IGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKT 825 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFE 953 R LLQ++D V N ++ F + K + DK L + + Sbjct: 826 RSTLLQAIDQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------Q 872 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LGFY S HP+D K + K + ++ S A NN + +Q +T+ G Sbjct: 873 YEKEYLGFYVSQHPVD--KMFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQ 927 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + +VT ++ + + FP Sbjct: 928 NMAFVTLNDGIETLDGVIFP 947 >gi|258424118|ref|ZP_05687000.1| DNA polymerase subunit III [Staphylococcus aureus A9635] gi|257845739|gb|EEV69771.1| DNA polymerase subunit III [Staphylococcus aureus A9635] Length = 1065 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 335/1029 (32%), Positives = 530/1029 (51%), Gaps = 93/1029 (9%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS--RMYLLDQGKQSVR 130 MT TV ++VL G + L +L S +M L+ Sbjct: 64 ------------MTIYVTNGLNTVETVVL-AKDNNGLKDLYQLSSEIKMNALEH------ 104 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L+ +I+ + D F+S + Sbjct: 105 VSFELLKRFSNNMIIIFKNVADEHRDIVQVFDSHE------------------------- 139 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D Y + + V + V N + + +D + L A+ +T + Sbjct: 140 --DTYLDHRSV---LVQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFG 194 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 H+L + + E L IA++C+ L H +LP++ + D+ K+ Sbjct: 195 AHFLTEKE--IKQLDINQEYLTQVDVIAQKCNAELNYHQSLLPQY-QTPNDESAKKYLWR 251 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 + + LE+ + Y +RL +E VI M F YFLIV+D I +AK N Sbjct: 252 VLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 300 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR++V Sbjct: 301 DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKV 360 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I+YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LIP+ ++L Sbjct: 361 IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLD 418 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 F++ + +R I +KLEGL RH STHAAGI+I D PL + P+ + Sbjct: 419 EAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 478 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609 L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ IPF+D + + Sbjct: 479 GLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFEDQKVF 536 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ Sbjct: 537 ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 596 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 K+ +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ ++ Sbjct: 597 KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 656 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A Sbjct: 657 QHFIEGAKQNGYHEGISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 716 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 ++ + + +K + ++A++ I I+PP++N +K IY S+ IKGVG + Sbjct: 717 NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 776 Query: 850 ARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 + I+ E + F DF R+ + R++LE+L+ GA D FG +R LLQ++D Sbjct: 777 VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ- 835 Query: 909 QKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 V N ++ F + K + DK L + + E+ LGFY S Sbjct: 836 ------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVS 883 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HP+D K + K + ++ S A NN + +Q +T+ G + +VT ++ Sbjct: 884 QHPVD--KMFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGI 938 Query: 1025 KEYEANFFP 1033 + + FP Sbjct: 939 ETLDGVIFP 947 >gi|323442993|gb|EGB00615.1| DNA polymerase III alpha subunit [Staphylococcus aureus O46] Length = 1065 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 337/1040 (32%), Positives = 533/1040 (51%), Gaps = 115/1040 (11%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPRFYDACIANNIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 MT T+ ++VL G + L +L S+ I Sbjct: 64 ------------MTIYVTNGLNTIETVVL-AKDNNGLKDLYQLSSK------------IK 98 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 ++ ++ + E L Q + ++ FK + HRG Sbjct: 99 MNSIENVSFELL-------------------QQFSSNLIIIFKNV--------ADEHRG- 130 Query: 193 DRYRESQVVQLAYTHE-------------LPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 +VQ+ +HE + V + + +D + L A+ +T Sbjct: 131 -------IVQVFDSHEDTYLDHRSVLVQGIKHVWIQTVCYQTPQDADTISALAAIRDNTK 183 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + H+L + + E L IA++C+ L+ H +LP++ + Sbjct: 184 LDLIHDQEDFGAHFLTEKE--IKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQY-QTP 240 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D+ K+ + + LE+ + Y +RL +E VI M F YFLI Sbjct: 241 NDESAKKYLWRVLVTQLKKLEL-----------NYDVYLERLKYEYKVITNMGFEDYFLI 289 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V+D I +AK N++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD D Sbjct: 290 VSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDID 349 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDF RR+ VI+YVQ KYG V+ I+TFG L A+A RDVGR + ++ + LI Sbjct: 350 IDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLI 409 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+ ++L F++ + +R I +KLEGL RH STHAAGI+I D PL Sbjct: 410 PHKLG--ITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPL 467 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 + P+ + L TQ+ M E+ GL+K DFLGL+ L+++ + L + + G+ +D+ Sbjct: 468 YEYAPLTKGDTGLL--TQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDI 525 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IPFDD + + LL+ T GIFQLES G+R L+ ++P+ EDI+A+ SLYRPGP++ I Sbjct: 526 EKIPFDDQKVFDLLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEI 585 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y R++ K+ +HP ++P+LK T GVIIYQEQ+MQIA + +S EAD+LRRAM Sbjct: 586 PTYITRRHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMS 645 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK + ++ +++ FI GA +NG + I+ IF+L+ KFADYGF ++HA +Y+ I+Y ++ Sbjct: 646 KKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSF 705 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYP F A ++ + + +K + ++A++ I I+PP++N +K IY S Sbjct: 706 LKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSKEGIYLS 765 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 + IKGVG + + I+ E + F DF R+ + R++LE+L+ GA D FG + Sbjct: 766 IGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKT 825 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----KGTFSDKITLEKFSVENSSVRFE 953 R LLQ++D V N ++ F + K + DK L + + Sbjct: 826 RSTLLQAIDQ-------VLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALIS------Q 872 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LGFY S HP+D K + K + ++ S A NN + +Q +T+ G Sbjct: 873 YEKEYLGFYVSQHPVD--KMFVAKQYLTIFKLSNAQ---NNKPILVQFDKVKQIRTKNGQ 927 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + +VT ++ + + FP Sbjct: 928 NMAFVTLNDGIETLDGVIFP 947 >gi|329667461|gb|AEB93409.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026] Length = 1038 Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust. Identities = 338/1040 (32%), Positives = 538/1040 (51%), Gaps = 69/1040 (6%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 V LQ S ++LLE + N+ + AIA+TD N + ++F + A GI+P++ Sbjct: 4 VSLQNLSGFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIKPLL 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--KQSV 129 G QL I+ G ++++ +GY+ ++ L S + LL + K+++ Sbjct: 64 GMQLRIN----------GLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ 187 + + +G LI++T + + N+ ++ L + +Y+ + Sbjct: 114 LTFENLKKYLGH--LILITPSNLHSELKMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVY 171 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246 G Y + + LA LPL A + +L+ + L A+ +T + ++ Sbjct: 172 ADSGQQEYI-NYIRSLATQFSLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENIEQLA 230 Query: 247 RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + HYLKN E+ + D+ +AL+N EI + C+ ++ P LP+F + Sbjct: 231 KQAGSHYLKNSEELQVSYRKFDIEDALKNAEEIGKICTAEIKFQDPQLPKFKQ------- 283 Query: 305 KEEENELRNKAVAGLEV--RLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 NK E LAQ +AK ++ Q Y++RLD+EL VI M F YFLI Sbjct: 284 --------NKFPTSKEYLHALAQEGLAKRFNNQIPAQYQKRLDYELQVINEMGFDDYFLI 335 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D + +A +I GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R MPD D Sbjct: 336 VWDVMNFAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDID 395 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +D +RRDEVI+Y+ KYG AQI+TFG+L AK L+DV R + + R I Sbjct: 396 LDIPDNRRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAI 455 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+ +A + + L ++ LE L RH S HAAG+VI D L Sbjct: 456 PHSKGKITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSL 515 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 +++V + +PVTQ +E GL+K DFLGL+ LT+L + L G+ +D + Sbjct: 516 AEIVGLQAGPLG-IPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIVAALRADGIDIDPN 574 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD ET L T +FQ ES G+++ LE + PD EDI+A+ +LYRPGPI+NI Sbjct: 575 RIPLDDQETLTLFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNID 634 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + NRK+GKE++ P + +L T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM K Sbjct: 635 HFINRKHGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSK 694 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K + + +++ +FI GA K G K A +++ +A+FA+YGFN+SHA AY+ I++ A+ Sbjct: 695 KNADVIQRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYF 754 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP F A + M N KI ++ A++ I+I+PP++ DF + + +I L Sbjct: 755 KVHYPGAFYLALLNSNMGNRNKIAQYLMQAQEAGIKILPPNIENSKADFSLENGKILVGL 814 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AI+G+ + + I+E +P S+ DF ++D+ L+ +E+L+ AG D +R Sbjct: 815 KAIRGLRSDLLKQILEIK--RPIKSMTDFLWKIDNNLLSADAVENLIKAGTFDRLAPNRN 872 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQR 957 +LL+ ++ + + N + +F T K+ EK + E S++ E Sbjct: 873 ELLKINKDLVESVKMAGSNLS-----LFE----TLEPKVEEEKMPTAAEKSAMEVE---- 919 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK----KTRKGS 1013 +GF +P+ + RK K + + +G + V K K T+KG Sbjct: 920 AMGFSTGINPIIAVQKYARKFNAKRLQVFESNEQG-------IAVGKLMKVKPITTKKGD 972 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + + FS+ + E + FP Sbjct: 973 NMAFAVFSDTSGEKDFTIFP 992 >gi|327542106|gb|EGF28600.1| DNA polymerase III, alpha subunit [Rhodopirellula baltica WH47] Length = 1045 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 302/818 (36%), Positives = 466/818 (56%), Gaps = 31/818 (3%) Query: 174 FKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 F K+FGDR ++ + + R + V +A LPLVAT++ ++++ED EA D+++ Sbjct: 35 FHKVFGDRYFIEIMNNDVDIQRTQLEGAVDIANKMGLPLVATSDCHYVNQEDAEAQDIML 94 Query: 233 AVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 + + R ++ D + L++ +M F L +A+ + EIA L+ + Sbjct: 95 CINTGRFRTDNTRMKMENDQFFLRSPQQMYEKFPGLEDAVGRSQEIADTVDIQLEFNKYF 154 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIA 349 P F C D + + LR GL R I G + + RLD EL+VI Sbjct: 155 FPSF---PCPD-ELTPLDYLRKLCEQGLMERYEGDDERIIDGKLSDEVMARLDRELDVIE 210 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 ++ + YFLIV DF+ A+ I RGSG G++ YAL ++ + PLR+ LLFERFL+ Sbjct: 211 KLGYPTYFLIVWDFVNHARDIGIS-ATARGSGVGAIVCYALYMSHVCPLRYDLLFERFLD 269 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 R PD DIDF ++RR EVI YV+ +YG E V QI TFG+L AKAA++D GRAL +P Sbjct: 270 ESRTEPPDIDIDFEKERRIEVIDYVKERYGSEMVCQIGTFGTLAAKAAIKDTGRALGIPL 329 Query: 470 SQVDRLCKLIPNDPAHPV--SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 S+V+++ +L+P++ + SL+ AD + DP + LL+++ K+EGL R+ T Sbjct: 330 SRVNQITELVPDELKITIAKSLEKSAD---LKMIYDGDPEIRELLDLAMKIEGLARNVGT 386 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAA +VI D+PL++ VP+ R +TQ+ M +E +GL+K DFLGL+ LT+L +++ Sbjct: 387 HAAAVVIADKPLTEYVPLGRVPGKQDVITQWAMVDVEASGLLKMDFLGLRNLTILSRTVK 446 Query: 588 FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + Q G +D P DD +Y LL T G+FQLES G+R L+ M+PD DIIA Sbjct: 447 LVEQTTGTTIDPLKFPLDDKPSYALLQRGETKGVFQLESGGIRDLLQRMKPDTFNDIIAT 506 Query: 647 VSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 +LYRPGP++ +V Y N K+G+++ HP++ +L+ET +++YQEQVM+I L Sbjct: 507 AALYRPGPLEGGMVDDYVNIKHGRQQPEYKHPVLKEILEETNSIMVYQEQVMRILNRLGD 566 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 L++A +A+ KK + +D + FI+G+ KNG+++ A +I+ L+ KFA YGFNKS Sbjct: 567 VPLAKAYTCIKAISKKKQALIDANHDVFIAGSIKNGLAEKDAEDIWNLIVKFAGYGFNKS 626 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN-----VEKIKKFCQDARQFNIQIMPP 819 H+ AYA+++YQTA++K HYPVEF+AA ++ ++ + + + +D + +I+++PP Sbjct: 627 HSTAYALVAYQTAYLKAHYPVEFMAALLSSDISGRNFKRKDALVEHMEDCDRMDIEVLPP 686 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878 +VN DF V D +I ++L+AIK G +TA I E + PF + DFC RVD N Sbjct: 687 NVNQSDADFGVLDGKIPFALSAIKACGGSTAISIEEERKKNGPFKDIFDFCERVDPHDCN 746 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN--------IFAHE 930 R +E+L+ AGA DCFG R QL L+ + V+ ++ + A Sbjct: 747 RSSIETLIKAGAFDCFGAKRSQLASVLERAMQAGAKVQADKKTGQASFFDAFDEEDDADS 806 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 G S + L + E+ VLGFY HPL Sbjct: 807 NGESSAAVPLPDIEEWPDREKLLAEKEVLGFYLDSHPL 844 >gi|227510300|ref|ZP_03940349.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189952|gb|EEI70019.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1093 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 351/1014 (34%), Positives = 538/1014 (53%), Gaps = 80/1014 (7%) Query: 43 AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102 A+A+TD N ++ A+EF AGIQPIIG L NL + + SI+LL Sbjct: 12 ALAMTDINVMYGAVEFYDTCIDAGIQPIIGLTL------NLPGVMLSENNY----SILLL 61 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRI------------CLSWLQEIGTEGLIMLTGG 150 GYQ L+++ + L + G+ V I L L EI +L G Sbjct: 62 AKNQTGYQNLLKIST---LKNSGETDVTIDQLNGRLDGLYVILPPLAEIND----LLLQG 114 Query: 151 SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV----QLAYT 206 S I K+ L F G D + ++ ++A Sbjct: 115 KSADISDLISKLMDLGLTKQDLKF----------------GVDYHSSDALIDMLSKVAAD 158 Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--KDRPRVTPDHYLKNRSEMVSIF 264 +++ L+A +L+ EDY VL A+A T +S + +V P ++L+ + M + Sbjct: 159 NQVQLIADAPVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGP-YFLRPQDRMEKEY 217 Query: 265 S--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322 L AL+ E+ C ++ P LP+F + +D+ E LR GL R Sbjct: 218 QRLHLNAALQAIDEVVSNCHVEIKKKQPKLPQF--ETPNDM--EPGQYLRQLCEKGLSKR 273 Query: 323 LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382 L I+ YR RLD EL+VI M F YFLIV D I +A + I GPGRGS A Sbjct: 274 LEAAHISDD---APYRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGSAA 330 Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442 GS+ AY L ITD+DP+++ LLFERFLNP+R+ MPD D+D D+RD+VI+YV KYGH+R Sbjct: 331 GSLVAYTLFITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGHQR 390 Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502 VAQIITFG+L AK A RDVGR + +Q D K IP+ A V+L +S+ + Sbjct: 391 VAQIITFGTLAAKQATRDVGRVFGLNPNQQDVWSKAIPS--AFHVTLADAYHNSQQLKNL 448 Query: 503 LADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 +AD +++ L + +Q LEGL RH STHAAG+V+ D L LVP+ +D L +TQ++ Sbjct: 449 VADSDLNKSLFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPL-QDGNDGLLMTQYSKD 507 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGI 620 ++E GL+K DFLGL+ LT+L +L + Q G K+++S IP DD +T L T G+ Sbjct: 508 YVESVGLLKIDFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGDTTGV 567 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ ESSG+R L + P+ ED+ + +LYRPGP++NI RK+ +E + ++ Sbjct: 568 FQFESSGIRSVLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLED 627 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +LK T GVI+YQEQVM +A ++G+SL +AD+LRRAM KK + MD+ K F++GA K G Sbjct: 628 ILKSTYGVIVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKKG 687 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 K +A +F+ + KFA+YGFNKSHA AY+ ++Y+ A++K ++P EF A + ++ Sbjct: 688 HPKQVAEKVFDYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSSV 747 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASAD 859 K+K++ DA+ ++++ P +N DF D +I + LA+IKGV + I+ + + Sbjct: 748 KMKEYLSDAKSMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQN 807 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 + S + +R+ K ++ +L+++GALD F Y+R +L+ + Q Sbjct: 808 GRYKSFPNLLARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQL----- 862 Query: 920 TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 + ++F + T K + R E E LG Y SGHP++ + + +++ Sbjct: 863 SGDSMSLFKALEPTVPRKPEMPLMQ------RLEKENDYLGAYLSGHPVERFTALRKRLN 916 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K + V + N + L + + +T+ G ++ + S+ E FP Sbjct: 917 AKLTNQLVVGM--NQVVLILYITKVKIIRTKTGKQMAFFDGSDEVGEMSVTVFP 968 >gi|227513307|ref|ZP_03943356.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] gi|227083508|gb|EEI18820.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] Length = 1093 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 349/1006 (34%), Positives = 545/1006 (54%), Gaps = 64/1006 (6%) Query: 43 AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102 A+A+TD N ++ A+EF AGIQPIIG L NL + + SI+LL Sbjct: 12 ALAMTDINVMYGAVEFYDTCIDAGIQPIIGLTL------NLPGVMLSENNY----SILLL 61 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFF 161 GYQ L+++ + L G+ +V I Q G +GL ++ + D Sbjct: 62 AKNQTGYQNLLKIST---LKSSGETNVMID----QLNGRLDGLYVILPPFAEINDLLLQG 114 Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHR---GYDRYRESQVV----QLAYTHELPLVAT 214 S+ ++E L + + L + G D + ++ ++A +++ L+A Sbjct: 115 KSADISE--------LISKLMDLGLTKQDIKFGVDYHSSDTLIDMLSKVAADNQVQLIAD 166 Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQ--KDRPRVTPDHYLKNRSEMVSIFS--DLPEA 270 +L+ EDY VL A+A T +S + +V P ++L+ + +M + L A Sbjct: 167 APVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGP-YFLRPQDQMEKEYQRLHLNAA 225 Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330 L+ E+ C ++ P LP+F + +D+ E LR GL RL I+ Sbjct: 226 LQAIDEVVSNCHVEIKKKQPKLPQF--ETPNDM--EPGQYLRQLCERGLSKRLEAAHISD 281 Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390 YR RLD EL+VI M F YFLIV D I +A + I GPGRGS AGS+ AY L Sbjct: 282 D---APYRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGSAAGSLVAYTL 338 Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450 ITD+DP+++ LLFERFLNP+R+ MPD D+D D+RD+VI+YV KYGH+RVAQIITFG Sbjct: 339 FITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGHQRVAQIITFG 398 Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510 +L AK A RDVGR + +Q D K IP+ A V+L +S+ + +AD ++++ Sbjct: 399 TLAAKQATRDVGRVFGLNPNQQDVWSKAIPS--AFHVTLADAYHNSQQLKNLVADSNLNK 456 Query: 511 -LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 L + +Q LEGL RH STHAAG+V+ D L LVP+ +D L +TQ++ ++E GL+ Sbjct: 457 SLFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPL-QDGNDGLLMTQYSKDYVESVGLL 515 Query: 570 KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ LT+L +L + Q G K+++S IP DD +T L T G+FQ ESSG+ Sbjct: 516 KIDFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGDTTGVFQFESSGI 575 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 R L + P+ ED+ + +LYRPGP++NI RK+ +E + + +LK T GV Sbjct: 576 RSVLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLKDILKSTYGV 635 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQVM +A ++G+SL +AD+LRRAM KK + MD+ K F++GA K G K +A Sbjct: 636 IVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKRGHPKQVAEK 695 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 +F+ + KFA+YGFNKSHA AY+ ++Y+ A++K ++P EF A + ++ K+K++ D Sbjct: 696 VFDYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSSVKMKEYLSD 755 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLED 867 A+ ++++ P +N DF D +I + LA+IKGV + I+ + + + S + Sbjct: 756 AKSMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQNGRYKSFPN 815 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 +R+ K ++ +L+++GALD F Y+R +L+ + Q + ++F Sbjct: 816 LLARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQL-----SGDSMSLF 870 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + T K + R E E LG Y SGHP++ + + +++ K + V Sbjct: 871 KALEPTVPRKPEMPLMQ------RLEKENDYLGAYLSGHPVERFTALRKRLDAKLTNQLV 924 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + N + L + + +T+ G ++ + S+ E FP Sbjct: 925 VGM--NQVVLILYITKVKIIRTKTGKQMAFFDGSDEVGEMSVTVFP 968 >gi|25028585|ref|NP_738639.1| DNA polymerase III subunit alpha [Corynebacterium efficiens YS-314] gi|23493870|dbj|BAC18839.1| putative DNA polymerase III alpha subunit [Corynebacterium efficiens YS-314] Length = 1204 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 342/1023 (33%), Positives = 551/1023 (53%), Gaps = 71/1023 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ YS+L+G ++ + D++ Q PA+ ITD N++ + F +K Sbjct: 17 MAKQSSFVHLHNHTEYSMLDGMAKIDMLADEVNRQQMPAVGITDHGNMYGSNAFYRKMTE 76 Query: 65 AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AG++PIIG + L + + N + G+ P + +L A G + L Sbjct: 77 AGVKPIIGIEAYLAPESRFNKERVRWGE-PHQKSDDVSASGAYLHQTMLAENATGLRNLF 135 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R+ + E EG+I TG SG + A + Sbjct: 136 YLSSMASYEGQLGKWPRMDAEIIAER-AEGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 194 Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ ++G D ++ L H G D R R S+++++ LP + TN+ ++ E +AH+ Sbjct: 195 WQDIYGRDNYFLELMDH-GLDIENRVR-SELLEIGRKLNLPPLVTNDCHYVLESQAQAHE 252 Query: 230 VLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQV 287 ++ V + +DR + +Y+K +M S++ D +P+ +NT+ IA R +Q Sbjct: 253 AMLCVQTGKTLHDEDRFKFDGSGYYIKTAEQMRSLWDDTVPDGCDNTLWIAER----VQD 308 Query: 288 HAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + I + E D + + E L ++ +AGLE R + Q+Y +R Sbjct: 309 YGEI---WEEHPHDRMPVADVPEGHTPTSWLHHEVMAGLEDRFPGQQVP-----QEYIER 360 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 ++E++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ Sbjct: 361 AEYEISVIDMKGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEH 420 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K A++D Sbjct: 421 GLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKD 480 Query: 461 VGRAL--QMPYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVD 509 R Q Y DR+ K++P A + L I D R+ EA DP V Sbjct: 481 SARVQFGQPGYQIADRITKVLPPPIMAKDIPLSGITDPEHERYNEAGEVRALIETDPDVR 540 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 ++ + ++ LEG+ R A HA +++ +PL + +PM++ +T ++ E GL+ Sbjct: 541 KIYDTARGLEGVVRQAGVHACAVIMSSQPLLECIPMWKRPADGAYITGWDYPACEAIGLL 600 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 K DFLGL+ LT++ +++ + A R G VDL + +D ETY LL+ TLGIFQL+ G Sbjct: 601 KMDFLGLRNLTVIGDAIENIKANRDGKVVDLENLSIEDEETYKLLSRGETLGIFQLDGGG 660 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM--- 681 M++ L+ MQP DI+A ++LYRPGP ++ Y +RKNG++ I IHP L +P+ Sbjct: 661 MQELLKRMQPTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLAEI 720 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L ET G+I+YQEQ+M+I+Q ++ Y+ +AD R+AMGKK E + K+ F +G NG Sbjct: 721 LGETYGLIVYQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLAKEFAAFEAGMKANGF 780 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S +++ + FA Y FNKSHAA Y ++S+ TA++K HY E++AA +T DN +K Sbjct: 781 SADAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDK 840 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861 + D R I+++ P +N ++F I Y L AI+ VG+ I+E K Sbjct: 841 TAIYLADCRHLGIRVLSPDINESALNFMPVGTDIRYGLGAIRNVGSEVVDSIIETRQSKG 900 Query: 862 -FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVE 916 F D+ ++D+ N+R+ ESL+ AGA D G++R L+ ++D++ + + Sbjct: 901 MFRDFSDYLDKIDTLPCNKRITESLIKAGAFDSLGHTRKGLMLVYEDAVDSVIATKKAAD 960 Query: 917 KNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 K + + + A + G F + +K+ ++ E+ +LG Y SGHPLD Y+ Sbjct: 961 KGQFDLFASFGAEAEDEVGGFFQIAVPDDKWDRKH---ELALEREMLGLYVSGHPLDGYE 1017 Query: 973 PIL 975 L Sbjct: 1018 DAL 1020 >gi|259507641|ref|ZP_05750541.1| DNA polymerase III, alpha subunit [Corynebacterium efficiens YS-314] gi|259164820|gb|EEW49374.1| DNA polymerase III, alpha subunit [Corynebacterium efficiens YS-314] Length = 1188 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 342/1023 (33%), Positives = 551/1023 (53%), Gaps = 71/1023 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ YS+L+G ++ + D++ Q PA+ ITD N++ + F +K Sbjct: 1 MAKQSSFVHLHNHTEYSMLDGMAKIDMLADEVNRQQMPAVGITDHGNMYGSNAFYRKMTE 60 Query: 65 AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AG++PIIG + L + + N + G+ P + +L A G + L Sbjct: 61 AGVKPIIGIEAYLAPESRFNKERVRWGE-PHQKSDDVSASGAYLHQTMLAENATGLRNLF 119 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R+ + E EG+I TG SG + A + Sbjct: 120 YLSSMASYEGQLGKWPRMDAEIIAER-AEGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 178 Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ ++G D ++ L H G D R R S+++++ LP + TN+ ++ E +AH+ Sbjct: 179 WQDIYGRDNYFLELMDH-GLDIENRVR-SELLEIGRKLNLPPLVTNDCHYVLESQAQAHE 236 Query: 230 VLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQV 287 ++ V + +DR + +Y+K +M S++ D +P+ +NT+ IA R +Q Sbjct: 237 AMLCVQTGKTLHDEDRFKFDGSGYYIKTAEQMRSLWDDTVPDGCDNTLWIAER----VQD 292 Query: 288 HAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + I + E D + + E L ++ +AGLE R + Q+Y +R Sbjct: 293 YGEI---WEEHPHDRMPVADVPEGHTPTSWLHHEVMAGLEDRFPGQQVP-----QEYIER 344 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 ++E++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ Sbjct: 345 AEYEISVIDMKGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEH 404 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K A++D Sbjct: 405 GLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKD 464 Query: 461 VGRAL--QMPYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVD 509 R Q Y DR+ K++P A + L I D R+ EA DP V Sbjct: 465 SARVQFGQPGYQIADRITKVLPPPIMAKDIPLSGITDPEHERYNEAGEVRALIETDPDVR 524 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 ++ + ++ LEG+ R A HA +++ +PL + +PM++ +T ++ E GL+ Sbjct: 525 KIYDTARGLEGVVRQAGVHACAVIMSSQPLLECIPMWKRPADGAYITGWDYPACEAIGLL 584 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 K DFLGL+ LT++ +++ + A R G VDL + +D ETY LL+ TLGIFQL+ G Sbjct: 585 KMDFLGLRNLTVIGDAIENIKANRDGKVVDLENLSIEDEETYKLLSRGETLGIFQLDGGG 644 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM--- 681 M++ L+ MQP DI+A ++LYRPGP ++ Y +RKNG++ I IHP L +P+ Sbjct: 645 MQELLKRMQPTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLAEI 704 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L ET G+I+YQEQ+M+I+Q ++ Y+ +AD R+AMGKK E + K+ F +G NG Sbjct: 705 LGETYGLIVYQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLAKEFAAFEAGMKANGF 764 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S +++ + FA Y FNKSHAA Y ++S+ TA++K HY E++AA +T DN +K Sbjct: 765 SADAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDK 824 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861 + D R I+++ P +N ++F I Y L AI+ VG+ I+E K Sbjct: 825 TAIYLADCRHLGIRVLSPDINESALNFMPVGTDIRYGLGAIRNVGSEVVDSIIETRQSKG 884 Query: 862 -FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVE 916 F D+ ++D+ N+R+ ESL+ AGA D G++R L+ ++D++ + + Sbjct: 885 MFRDFSDYLDKIDTLPCNKRITESLIKAGAFDSLGHTRKGLMLVYEDAVDSVIATKKAAD 944 Query: 917 KNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 K + + + A + G F + +K+ ++ E+ +LG Y SGHPLD Y+ Sbjct: 945 KGQFDLFASFGAEAEDEVGGFFQIAVPDDKWDRKH---ELALEREMLGLYVSGHPLDGYE 1001 Query: 973 PIL 975 L Sbjct: 1002 DAL 1004 >gi|227524451|ref|ZP_03954500.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] gi|227088410|gb|EEI23722.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] Length = 1093 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 349/1006 (34%), Positives = 543/1006 (53%), Gaps = 64/1006 (6%) Query: 43 AIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102 A+A+TD N ++ A+EF AGIQPIIG L NL + + SI+LL Sbjct: 12 ALAMTDINVMYGAVEFYDTCIDAGIQPIIGLTL------NLPGVMLSENNY----SILLL 61 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFF 161 GYQ L+++ + L G+ V I Q G +GL ++ + D Sbjct: 62 AKNQTGYQNLLKIST---LKSSGETDVMID----QLNGRLDGLYVILPPFAEINDLLLQG 114 Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHR---GYDRYRESQVV----QLAYTHELPLVAT 214 S+ ++E L + + L + G D + ++ ++A +++ L+A Sbjct: 115 KSADISE--------LISKLMDLGLTKQDLKFGVDYHSSDTLIDMLSKVAADNQVQLIAD 166 Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQ--KDRPRVTPDHYLKNRSEMVSIFS--DLPEA 270 +L+ EDY VL A+A T +S + +V P ++L+ + +M + L A Sbjct: 167 APVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGP-YFLRPQDQMEKEYQRLHLNAA 225 Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330 L+ E+ C ++ P LP+F + +D+ E LR GL RL I+ Sbjct: 226 LQAIDEVVSNCHVEIKKKQPKLPQF--ETPNDM--EPGQYLRQLCEKGLSKRLEAAHISD 281 Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390 YR RLD EL+VI M F YFLIV D I +A + I GPGRGS AGS+ AY L Sbjct: 282 D---APYRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGSAAGSLVAYTL 338 Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450 ITD+DP+++ LLFERFLNP+R+ MPD D+D D+RD+VI+YV KYGH+RVAQIITFG Sbjct: 339 FITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGHQRVAQIITFG 398 Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510 +L AK A RDVGR + +Q D K IP+ A V+L +S+ + +AD +++ Sbjct: 399 TLAAKQATRDVGRVFGLNPNQQDVWSKAIPS--AFHVTLADAYHNSQQLKNLVADSDLNK 456 Query: 511 -LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 L + +Q LEGL RH STHAAG+V+ D L LVP+ +D L +TQ++ ++E GL+ Sbjct: 457 SLFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPL-QDGNDGLLMTQYSKDYVESVGLL 515 Query: 570 KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ LT+L +L + Q G K+++S IP DD +T L T G+FQ ESSG+ Sbjct: 516 KIDFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGETTGVFQFESSGI 575 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 R L + P+ ED+ + +LYRPGP++NI RK+ +E + + +LK T GV Sbjct: 576 RSVLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLKDILKSTYGV 635 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQVM +A ++G+SL +AD+LRRAM KK + MD+ K F++GA K G K +A Sbjct: 636 IVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKRGHPKQVAEK 695 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 +F+ + KFA+YGFNKSHA AY+ ++Y+ A++K ++P EF A + ++ K+K++ D Sbjct: 696 VFDYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSSVKMKEYLSD 755 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLED 867 A+ ++++ P +N DF D +I + LA+IKGV + I+ + + + S + Sbjct: 756 AKSMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQNGRYKSFPN 815 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 +R+ K ++ +L+++GALD F Y+R +L+ + Q + ++F Sbjct: 816 LLARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQL-----SGDSMSLF 870 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + T K + R E E LG Y SGHP++ + + +++ K + V Sbjct: 871 KALEPTVPRKPEMPLMQ------RLEKENDYLGAYLSGHPVERFTALRKRLDAKLTNQLV 924 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + N + L + + +T+ G ++ + S+ E FP Sbjct: 925 VGM--NQVVLILYITKVKIIRTKTGKQMAFFDGSDEVGEMSVTVFP 968 >gi|257898944|ref|ZP_05678597.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15] gi|257836856|gb|EEV61930.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15] Length = 1103 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 341/1036 (32%), Positives = 537/1036 (51%), Gaps = 72/1036 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L +SYSLL+ + + + + ++AITD + L+ A EF + GIQPI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L ++ N G ++ GYQ+L++L SR + ++ Sbjct: 63 IGLHLSYTYEEK----NYG---------LLAYAKDETGYQQLMKLSSRKMIQEK------ 103 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185 ++ I T+ L+ + + + AF FF+ Q + +F Y+ Sbjct: 104 --MALDDMIETDHLVFVVPANHS-VSEAFNKEEHFFSHWQ------FLLENVFAKDFYIG 154 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244 L + D+ E Q PL A + L +ED A +V+ + + + + Sbjct: 155 LSENTP-DQLPEW--YQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESL 211 Query: 245 -RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 P + + YL + EM+ F + L +A+ +A SF Q H +LP + + Sbjct: 212 SAPLPSANGYLLSEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQG- 270 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 K+ LR + +E R+ + ++YR+RLD+EL+VI +M F YFLIV Sbjct: 271 ---KQAGEYLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVW 320 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D Sbjct: 321 DVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLD 380 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K IPN Sbjct: 381 IPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPN 440 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 ++ QA + E A L + + LEGL RH STHAAG+VI DR L + Sbjct: 441 QLKITLT-QAYKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLE 499 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 LVP+ R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ L Sbjct: 500 LVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKE 558 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T L T G+FQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI Sbjct: 559 IPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDT 618 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ KK Sbjct: 619 FIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKK 678 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K+ +D++K F+SGA + G S+ AV ++E + KFA+YGFN+SHA AY+ + +Q A++K Sbjct: 679 KKDVLDEEKSHFVSGALQQGYSEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLK 738 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSL 839 H+P F + M N K+K++ +AR+ +++ PS+N F+ V I + L Sbjct: 739 AHHPGAFFTSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGL 798 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKG+ ++ E + PF S++ F R+D + L +L+SL G D +R Sbjct: 799 TAIKGIRRDFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNR 858 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 QL+ L+ K V + I A ++ +D E+ +E + Sbjct: 859 KQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL-------- 908 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGW 1017 G Y SGHP + + ++ + + + I N + L M+ ++ +T+KG + + Sbjct: 909 -GVYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAF 963 Query: 1018 VTFSEPAKEYEANFFP 1033 V ++ + E FP Sbjct: 964 VEGTDSSGEISVTVFP 979 >gi|300361563|ref|ZP_07057740.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus gasseri JV-V03] gi|300354182|gb|EFJ70053.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus gasseri JV-V03] Length = 1038 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 337/1032 (32%), Positives = 540/1032 (52%), Gaps = 53/1032 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 V LQ SS++LLE + ++ + A+A+TD N + + F + A GI+P++ Sbjct: 4 VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIKPLL 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVR 130 G QL I+ G ++++ +GY+ ++ L S + LL + G++ Sbjct: 64 GMQLRIN----------GLVDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113 Query: 131 ICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQ 187 + L L++ +G L+++T + + N+ ++ + T K +Y+ + Sbjct: 114 LELEELKKYLGH--LVIITPSNIHSELKMLQANNPKMGANYIRTLKDSVPTSSSIYLGVY 171 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246 +G Y + + LA EL L A + +L+ + L A+ +T + ++ Sbjct: 172 ADQGQQEYI-NYLRSLATQFELLLTAVEDGQYLNRNEQFLRRTLQAIKSNTHLENIEQLA 230 Query: 247 RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + HYLKN E+ + ++ +ALEN +I + CS + P LP+F + + Sbjct: 231 KQAGSHYLKNSEELQVNYRKFEIEDALENAEKIGQICSAQITFQDPQLPKFKQNKF---- 286 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L + A GL R KG + Y+ RLD+EL VI M F YFLIV D + Sbjct: 287 PTSKEYLHSLAQNGLAKRF------KGRIPEKYQARLDYELKVINEMGFDDYFLIVWDVM 340 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A +I GPGRGS AGS+ +YAL IT++DPL ++LLFERFLNP R MPD D+D Sbjct: 341 NFAHSVHITTGPGRGSAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPD 400 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RRDEVI+Y+ KYG AQI+TFG+L AK L+DV R + + R IP+ Sbjct: 401 NRRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKG 460 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +A + + L ++ LE L RH S HAAG+VI D L+++V Sbjct: 461 KITLAEAYQKSKELQLLVNTNAFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVG 520 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + +PVTQ +E GL+K DFLGL+ LT+L + L GV++D + IP + Sbjct: 521 LQAGPLG-IPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIIAALKSEGVEIDPNQIPLN 579 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D ET L T +FQ ES G+++ LE + PD EDI+A+ +LYRPGP++NI + NR Sbjct: 580 DQETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIGHFINR 639 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GKEK+ P + +L T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK + Sbjct: 640 KHGKEKVQYPDPSLKKILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADV 699 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + K++E+FI GA K G K IA +++ +A+FA+YGFN+SHA AY+ I++ A+ K HYP Sbjct: 700 IQKEREKFIQGAVKLGRRKEIAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYP 759 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 F + + + N KI ++ A++ I+ +PP + DF + + +I L A++G Sbjct: 760 GAFYLSLLNSNIGNRNKIAQYLMQAQEAGIKTLPPDIENSKADFSLENGKILVGLKAVRG 819 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 + + + I+E +P S+ DF ++D+ L+ + +L+ AGA D +R +LL+ Sbjct: 820 LRSDLLKQILEIK--RPIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKI 877 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQRVLGFY 962 ++ + + N + +F T KI EK + E S++ E +GF Sbjct: 878 NKDLVESVKMAGSNLS-----LFE----TLEPKIEEEKMPTAAEKSAMEVE----AMGFS 924 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFS 1021 +P+ + RK K + N +A + K +Q T+KG + + FS Sbjct: 925 TGINPIIAVQKYARKYNAK----RLQAFENNEQGIAVGKLMKIKQITTKKGDNMAFAVFS 980 Query: 1022 EPAKEYEANFFP 1033 + + + + FP Sbjct: 981 DSSGDKDFTIFP 992 >gi|300214577|gb|ADJ78993.1| DNA polymerase III alpha subunit [Lactobacillus salivarius CECT 5713] Length = 1097 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 336/1034 (32%), Positives = 541/1034 (52%), Gaps = 65/1034 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQV SSYSLL+ L + + A+ +TD N+++ L+F + AGI+PI Sbjct: 2 YAPLQVLSSYSLLQSPLRIPEYVKLGKELGYNALVLTDINSMYGVLDFYHECVKAGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGKQSV 129 IG L G + + + + GYQ L+ + S R+ +D+ +++ Sbjct: 62 IGITL-----------QSGDDEY------IFIAKNSNGYQNLMNISSKRLTAVDENYKNI 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 L+ + E + +++L D S QV E + L + Y + + Sbjct: 105 -FKLADITEYLQDVIVILKPSYLTVND----IISDQVTELQTLVSA---AETTYYGVNPN 156 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 DR + + A +L + +L E DY + VL A+ V+ + Sbjct: 157 ---DRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNWNFK-N 212 Query: 250 PDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +YL E + +D L A +N + + +C+ L LP F KE + + E Sbjct: 213 DGNYLHTPEEYERLGTDYLSSAYQNAINVIAQCNLTLNFPKTQLPHF--KETNGLS--SE 268 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL R+A+ I + ++Y+ RLD+EL+VI RM F YFLIV D +A Sbjct: 269 GFLRKLCQEGLAKRIAEENIK---NQEEYQNRLDYELSVIHRMGFDDYFLIVWDVTNFAH 325 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +NNI GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R MPD D+D +RD Sbjct: 326 ENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKRD 385 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +I Y+ KYG + +AQIITFG+L+ K LRDV R + + D K IP + + ++ Sbjct: 386 TIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKE--YGIT 443 Query: 489 LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L+ S+ + +AD S +RLL E + LEGL RH STHAAGI++ D L VP+ Sbjct: 444 LKEAYASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLIDHVPV-- 501 Query: 548 DVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFD 604 + D + ++QF +E+ GL+K DFLGL+ L++L+ ++ L ++G VD + I D Sbjct: 502 QIGGDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTIT-LIKKGYHVDFDIRKINLD 560 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D ET + T G+FQ ES+G+R L ++P ED+ A+ +LYRPGPI NI + R Sbjct: 561 DPETLKIYQNAETSGVFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEFIAR 620 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ I ++ +LK+T G+++YQEQVMQ+A + G++L +AD LRRAM KK + Sbjct: 621 KHGERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDI 680 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + + + FI+GA K G + +A ++ + +F DYGFN+SHA AY+ +S++ A++K HYP Sbjct: 681 ISRMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYP 740 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 F AA + + N K K + +A+ +++ P +N + + + IY+ L+ IK Sbjct: 741 AAFFAALLNSVIGNPRKTKDYVLEAKNKGVRVHHPDINISQSLYILRNGEIYFGLSCIKS 800 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL- 902 + + I+ E + F ++EDF R+D + L R ++E L+++G D FG SR +L Sbjct: 801 LRKNFLQDILQERKRNGIFKNMEDFLQRIDKRYLKRELIEILIYSGVFDTFGQSRRELFA 860 Query: 903 ---QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + L NI+ VE +F+ K T+EK + N + E E L Sbjct: 861 MLPRLLSNIELSGNNVE---------LFSM---LAPKKTTVEKIEISNDEL-LEKENYYL 907 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G Y SGHP++ Y ++ + + + + + + + +T+ GS++ +VT Sbjct: 908 GAYLSGHPVEKYTELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVT 967 Query: 1020 FSEPAKEYEANFFP 1033 ++ + FFP Sbjct: 968 AADQTGNMDLTFFP 981 >gi|301301229|ref|ZP_07207385.1| DNA polymerase III, alpha subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851228|gb|EFK78956.1| DNA polymerase III, alpha subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1097 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 335/1034 (32%), Positives = 543/1034 (52%), Gaps = 65/1034 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQV SSYSLL+ L + + A+ +TD N+++ L+F + AGI+PI Sbjct: 2 YAPLQVLSSYSLLQSPLRIPEYVKLGKELGYNALVLTDINSMYGVLDFYHECVKAGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGKQSV 129 IG L G + + + + GYQ L+ + S R+ +D+ +++ Sbjct: 62 IGITL-----------QSGDDEY------IFIAKNSNGYQNLMNISSKRLTAVDENYKNI 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 L+ + E + +++L D S QV E + L + Y + + Sbjct: 105 -FKLADITEYLQDVIVILKPSYLTVND----IISDQVTELQTLVSA---AETTYYGVNPN 156 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 DR + + A +L + +L E DY + VL A+ V+ + + Sbjct: 157 ---DRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNWNLK-S 212 Query: 250 PDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +YL E + +D L A +N + + +C+ L LP F KE + + E+ Sbjct: 213 DGNYLHTPEEYERLGADYLSSAYQNAINMIAQCNLTLNFPKTQLPHF--KETNGLSSEDF 270 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL R+A+ I + ++Y+ RLD+EL+VI RM F YFLIV D +A Sbjct: 271 --LRKLCQEGLAKRIAEENIK---NQEEYQSRLDYELSVIHRMGFDDYFLIVWDVTNFAH 325 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +NNI GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R MPD D+D +RD Sbjct: 326 ENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKRD 385 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +I Y+ KYG + +AQIITFG+L+ K LRDV R + + D K IP + + ++ Sbjct: 386 TIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKE--YGIT 443 Query: 489 LQAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L+ S+ + +AD S +RLL E + LEGL RH STH+AGI++ D L VP+ Sbjct: 444 LKEAYASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHSAGIILSDDDLVDHVPV-- 501 Query: 548 DVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFD 604 + D + ++QF +E+ GL+K DFLGL+ L++L+ ++ L ++G +D + I D Sbjct: 502 QIGGDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTIT-LIKKGYHIDFDIRKINLD 560 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D ET + T GIFQ ES+G+R L ++P ED+ A+ +LYRPGPI NI + R Sbjct: 561 DPETLKIYQNAETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEFIAR 620 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ I ++ +LK+T G+++YQEQVMQ+A + G++L +AD LRRAM KK + Sbjct: 621 KHGERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDI 680 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + + + FI+GA K G + +A ++ + +F DYGFN+SHA AY+ +S++ A++K HYP Sbjct: 681 ISRMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYP 740 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 F AA + + N K K + +A+ +++ P +N + + + IY+ L+ IK Sbjct: 741 AAFFAALLNSVIGNPRKTKDYVLEAKNKGVRVHHPDINISQSLYILRNGEIYFGLSCIKS 800 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL- 902 + + I+ E F ++EDF R+D + L R +++ L+++G D FG SR +LL Sbjct: 801 LRKNFLQDILQERKRSGIFKNMEDFLQRIDKRYLKRELIDILIYSGVFDTFGQSRKELLA 860 Query: 903 ---QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + L NI+ VE +F+ K T+EK + N + E E L Sbjct: 861 MLPRLLSNIELSGNNVE---------LFSM---LAPKKTTVEKIKISNDEL-LEKENYYL 907 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G Y SGHP++ Y ++ + + + + + + + +T+ GS++ +VT Sbjct: 908 GAYLSGHPVEKYTELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVT 967 Query: 1020 FSEPAKEYEANFFP 1033 ++ + FFP Sbjct: 968 AADQTGNMDLTFFP 981 >gi|308234386|ref|ZP_07665123.1| DNA polymerase III, alpha subunit [Atopobium vaginae DSM 15829] gi|328944202|ref|ZP_08241666.1| DNA polymerase III [Atopobium vaginae DSM 15829] gi|327491121|gb|EGF22896.1| DNA polymerase III [Atopobium vaginae DSM 15829] Length = 1302 Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust. Identities = 340/1061 (32%), Positives = 538/1061 (50%), Gaps = 114/1061 (10%) Query: 67 IQPIIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-----RMY 120 I+PI GC+ + I Q K T Q + + LLV A GY L++++S MY Sbjct: 125 IKPIFGCEANLIPDQCIEKGTPQKRY------HLTLLVKNAVGYVNLMKMMSLAANQMMY 178 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 R + L++ EGLI L+G + G I + A FK LFGD Sbjct: 179 Y------KPRTTFAMLEKY-HEGLICLSGCAHGVIAQMIVTQQYDAARAWAQKFKALFGD 231 Query: 181 RLYVNLQRH----RGYDRYRES----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 Y+ +Q H ++ E ++VQL + +VATN++ + ++D E D+L Sbjct: 232 DFYLEIQDHGVSLDSWNGMSEQMIAQRIVQLGKEEGIAVVATNDNHYFHQDDVETRDILS 291 Query: 233 AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVH 288 + +T + + + + + Y K+ +M ++F+ +PEA++ +V IA +CSF L ++ Sbjct: 292 CIGANTHLDENYQSTLPGSEFYFKSEEQMRALFAWVPEAVDESVRIAAKCSFELDWTHMY 351 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 P P E E E R++ GL + + + + ++R ++E VI Sbjct: 352 LPKFPGLREGET------SEERFRSECEQGLARKYGKQWQDVTINGVNVKERFEYEYGVI 405 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 F+ YFLIV ++++WAK++ I VGPGRGS AG++ AYA+ IT DPL L+FERFL Sbjct: 406 CFKGFADYFLIVQEYVRWAKEHGIGVGPGRGSAAGAIVAYAMDITAFDPLENGLMFERFL 465 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 + +R MPD D+DF +RR EV+++V+ YG +RV +IT+ +++AK A+ D R L P Sbjct: 466 SLERTEMPDIDMDFDDERRLEVVQHVRELYGSDRVCHVITYSTIKAKQAINDAARVLGYP 525 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSR-------FREARLADPSVDRLLEISQKLEGL 521 + +L K++ +DP + + + F +A + R+++ ++ +EG+ Sbjct: 526 VATAQKLSKMVSSDPKTKLKFVLSKTEGKEDMYNPDFVDAYHNNGDEHRIIDAARSIEGI 585 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA I+I P++ VP D + + +TQ+ + GL+K DFLGL+TLT+ Sbjct: 586 IRGEGVHACAILIAPTPVNDHVPTKLDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTV 645 Query: 582 LQKSLDFLAQR------------GVK-----------VDLSLIPFDDHETYHLLTTKGTL 618 + K+LD + GVK +D IPF D + L+ + T Sbjct: 646 ISKALDNIRASYPDLSKLDSLGDGVKACLKPGATCIDIDPQKIPFTDPRIFQLVGSGRTA 705 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHP 676 G+FQ+ES GM ++ M+P I+AL++LYRPGP+ +V Y NR NG+E +V Sbjct: 706 GVFQIESEGMTATIKNMKPKEFRQIVALIALYRPGPLGAGMVTSYINRMNGREPVVFYDD 765 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV-LRRAMGKK---------IKEEMD 726 + +L ET G I+YQEQVMQI+ +SG+S E+D +R+ + KK E Sbjct: 766 RLSDILDETYGTIVYQEQVMQISVKMSGFSKGESDSKIRKPVAKKKIALLTSTIFHWENG 825 Query: 727 KQK---ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + + + +++GAS NG K +A I++ + +FA Y FNKSH+A YA++ QTAW+K ++ Sbjct: 826 RDETTYDHWMNGASANGYKKEVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAYF 885 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P E++A+ +T M KI + I+I+PP +N DF I + A I+ Sbjct: 886 PREYMASVLTSYMGKTNKIVHYISACNHEGIKILPPDINESGRDFTATPQGIRFGFAGIR 945 Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG IM E + PF +L DF RV+S + NRRV+E+L+ AGA D GY R QL+ Sbjct: 946 GVGENVGIAIMQERKKNGPFANLHDFVKRVNSAQANRRVVEALIKAGAFDSCGYPRKQLM 1005 Query: 903 QSLD-----NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN--- 954 +D NI A EK+R+ ++F + GT EK + R+E+ Sbjct: 1006 GFIDKNNPKNIIDEAARHEKDRSMGQLSLFDY-FGTVEGSGFEEKIPPADPHDRWEDGFM 1064 Query: 955 ---EQRVLGFYFSGHPLDVYKPILRK---MGIKGYEESVATI--------------RGNN 994 E+ VLG Y + HPL Y+ LR+ + EES I G Sbjct: 1065 LSQEREVLGIYVTDHPLRPYQVALRRSRDFTLSELEESKEVIDEQSGATHLEYKVPEGKT 1124 Query: 995 IRLAAMVVSK--QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I LA M + Q++ T+ G ++ VT + + FP Sbjct: 1125 IHLAGMTATGLIQRRLTKTGKQMAIVTLEDMEGQIPLVVFP 1165 Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58 +FVHL HS +S+L+ + S+ N++D A A+A+TD +F +F Sbjct: 2 AFVHLHNHSFFSVLDASTSIQNMVDAAVAQHMHALALTDHAYMFGIPDF 50 >gi|293571121|ref|ZP_06682160.1| DNA polymerase III subunit alpha [Enterococcus faecium E980] gi|291608803|gb|EFF38086.1| DNA polymerase III subunit alpha [Enterococcus faecium E980] Length = 1103 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 340/1036 (32%), Positives = 536/1036 (51%), Gaps = 72/1036 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L +SYSLL+ + + + + ++AITD + L+ A EF + GIQPI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L ++ N G ++ GYQ+L++L SR + ++ Sbjct: 63 IGLHLSYTYEEK----NYG---------LLAYAKDETGYQQLMKLSSRKMIQEK------ 103 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185 ++ I T+ L+ + + + AF FF+ Q + +F Y+ Sbjct: 104 --MALDDMIETDHLVFVVPANHS-VSEAFNKEEHFFSHWQ------FLLENVFTKDFYIG 154 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244 L + D+ E Q PL A + L +ED A +V+ + + + + Sbjct: 155 LSENTP-DQLPEW--YQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESL 211 Query: 245 -RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 P + + YL + EM+ F + L +A+ +A SF Q H +LP + + Sbjct: 212 SAPLPSANGYLLSEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQG- 270 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 K+ LR + +E R+ + ++YR+RLD+EL+VI +M F YFLIV Sbjct: 271 ---KQAGEYLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVW 320 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D Sbjct: 321 DVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLD 380 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K IPN Sbjct: 381 IPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPN 440 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 ++ QA + E A L + + LEGL RH STHAAG+VI DR L + Sbjct: 441 QLKITLT-QAYKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLE 499 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 LVP+ R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ L Sbjct: 500 LVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKE 558 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T L T G+FQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI Sbjct: 559 IPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDT 618 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ KK Sbjct: 619 FIARKKGKEAIHYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKK 678 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K+ +D++K F+SGA + G + AV ++E + KFA+YGFN+SHA AY+ + +Q A++K Sbjct: 679 KKDVLDEEKSHFVSGALQQGYLEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLK 738 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSL 839 H+P F + M N K+K++ +AR+ +++ PS+N F+ V I + L Sbjct: 739 AHHPGAFFTSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGL 798 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKG+ ++ E + PF S++ F R+D + L +L+SL G D +R Sbjct: 799 TAIKGIRRDFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNR 858 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 QL+ L+ K V + I A ++ +D E+ +E + Sbjct: 859 KQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL-------- 908 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGW 1017 G Y SGHP + + ++ + + + I N + L M+ ++ +T+KG + + Sbjct: 909 -GVYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAF 963 Query: 1018 VTFSEPAKEYEANFFP 1033 V ++ + E FP Sbjct: 964 VEGTDSSGEISVTIFP 979 >gi|257870428|ref|ZP_05650081.1| DNA polymerase III E [Enterococcus gallinarum EG2] gi|257804592|gb|EEV33414.1| DNA polymerase III E [Enterococcus gallinarum EG2] Length = 1102 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 338/1044 (32%), Positives = 535/1044 (51%), Gaps = 91/1044 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 L S+YSLL+ + + + + + D N L+ ALEF Q+ AGI+P+IG Sbjct: 4 QLTTLSAYSLLQSTIKIPRYIAAAKKAGYKVLGLADHNVLYGALEFYQQCQNAGIKPVIG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 D FP + L GY+ L+ L S + G + Sbjct: 64 VLFDCTF-------GTSTMRFP----LYLFAKNLSGYRLLMRLSSEKMI--NGHLDLSEY 110 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE--KRLLTFKKLFGDR-LYVNLQRH 189 L+ G I+ G P S +A+ + L F F + L++ +Q+ Sbjct: 111 LTLPDLFG----ILPQGQGFSPD------QSEDLAQLSRALTDFVARFDQKSLFLGVQKA 160 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKDRPR 247 Q H L L A L + + A V+ + + T + +K + + Sbjct: 161 AATPEREWFQ------QHGLELCAYQPVAALEQAELFAVQVMEHIKNGTQIEDFRKAKEQ 214 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + +YL+ +E++ F + EAL N IA C+ + +H +LP F +E ++ Sbjct: 215 SSETYYLEQPAELIQAFGENSEALVNNQRIAEECTLTIPLHQRLLPHFPLEEGEN----A 270 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR L R+ Q YRQRLD+EL+VI M F YFLI+ D + +A Sbjct: 271 ADFLRKLCFEKLSERITQVT-------DIYRQRLDYELSVIHTMGFDDYFLIIWDVMDFA 323 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 KN I G GRGS AGS+ A+ L ITD+DP+ + LLFERFLNP+R +MPD D+D +RR Sbjct: 324 HKNEIVTGAGRGSAAGSLVAFVLAITDVDPIEYDLLFERFLNPERYTMPDIDLDIPDNRR 383 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE++ YV+ KYG E +AQI TFG++ AK LRDV R + S+ +R K IPN + Sbjct: 384 DEILHYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIPNALKMTL 443 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +L A ++ RE + + + +++ LEGL RH STHAAG+VI D+ L LVP+ + Sbjct: 444 AL-AYEQSNQLRELATFNERNETMFAVAKVLEGLPRHVSTHAAGVVISDKNLLDLVPLQQ 502 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSLI 601 ++ +TQF M +E GL+K DFLGL+ L+++ +L RG+K V I Sbjct: 503 G-SDEILLTQFTMNDVETVGLLKMDFLGLRNLSIIDNTL-----RGIKRVTNETVTQKAI 556 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D L T GIFQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI + Sbjct: 557 PLNDPAVLRLFQQGDTAGIFQFESAGIRNVLRKLGPESIEDIAAVNALYRPGPMQNIDTF 616 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK G+EK+V + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK Sbjct: 617 IRRKKGQEKVVYPDAALVPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILRRAISKKK 676 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K+ +D+++ F+ GA N S A +++ + +FA+YGFN+SHA AY+ I +Q A++K Sbjct: 677 KDVLDEERRHFVEGAVANHFSAEKAEEVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKV 736 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLA 840 HYP F AA + +N K+K++ +A ++ + I+PPS+N F + + +I + + Sbjct: 737 HYPGPFFAALLHSVRNNPGKLKEYLNEATRYGVAILPPSINKSGYSFYLQSEKQIRFGFS 796 Query: 841 AIKGVGTTTARHIM-EASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGALDCFGY 896 ++KG+ + I+ E + F SL+ F R+ ++K L + L+ GA D Sbjct: 797 SVKGIRRDLIQDILDERKENGTFSSLDQFLLRLHQKNNKWLKEDYIRPLLSIGAFDELVT 856 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV------ 950 +R Q L L+ K +NI + G+ LE +++ + V Sbjct: 857 NRKQALIQLE--------------GKIQNI-TYSGGSLD---LLETMALKEAEVADYDLE 898 Query: 951 -RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + E+ LG Y SGHP+ Y+ + + + V R +R+ V ++ +T Sbjct: 899 QKLALEEEYLGVYLSGHPVQQYQKLQQLKQTIAIADLVPNER---VRILFYVRQIREIRT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 +KG ++ ++ ++ +KE FP Sbjct: 956 KKGEQMAFLEGTDASKEVSITVFP 979 >gi|257888619|ref|ZP_05668272.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,141,733] gi|257824673|gb|EEV51605.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,141,733] Length = 1103 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 338/1036 (32%), Positives = 535/1036 (51%), Gaps = 72/1036 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L +SYSLL+ + + + + ++AITD + L+ A EF + IQPI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEEIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L ++ N G ++ GYQ+L++L SR + ++ Sbjct: 63 IGLHLSYTYEEK----NYG---------LLAYAKDETGYQQLMKLSSRKMIQEK------ 103 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185 ++ I T+ L+ + + + AF FF+ Q + +F Y+ Sbjct: 104 --MALDDMIETDHLVFVVPATHS-VSEAFNKEEHFFSHWQ------FLLENVFTKDFYIG 154 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244 L + + + Q PL A + L +ED A +V+ + + + + Sbjct: 155 LSENTPN---QLPEWYQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESL 211 Query: 245 -RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 P + + YL + EM+ F + L +A+ +A SF Q H +LP + + Sbjct: 212 SAPLPSANGYLISEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQG- 270 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 K+ LR + +E R+ + ++YR+RLD+EL+VI +M F YFLIV Sbjct: 271 ---KQAGEYLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVW 320 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D Sbjct: 321 DVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLD 380 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K IPN Sbjct: 381 IPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPN 440 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 ++ QA + E A L + + LEGL RH STHAAG+VI DR L + Sbjct: 441 QLKITLT-QAYKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLE 499 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 LVP+ R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ L Sbjct: 500 LVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKE 558 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T L T G+FQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI Sbjct: 559 IPLNDAKTLPLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDT 618 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ KK Sbjct: 619 FIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKK 678 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K+ +D++K F+SGA + G S+ AV ++E + KFA+YGFN+SHA AY+ + +Q A++K Sbjct: 679 KKDVLDEEKSHFVSGALQQGYSEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLK 738 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSL 839 H+P F + M N K+K++ +AR+ +++ PS+N F+ V I + L Sbjct: 739 AHHPGAFFTSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGL 798 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKG+ ++ E + PF S++ F R+D + L +L+SL G D +R Sbjct: 799 TAIKGIRRDFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNR 858 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 QL+ L+ K V + I A ++ +D E+ +E + Sbjct: 859 KQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL-------- 908 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGW 1017 G Y SGHP + + ++ + + + I N + L M+ ++ +T+KG + + Sbjct: 909 -GVYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAF 963 Query: 1018 VTFSEPAKEYEANFFP 1033 V ++ + E FP Sbjct: 964 VEGTDSSGEISVTVFP 979 >gi|227550594|ref|ZP_03980643.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257897003|ref|ZP_05676656.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12] gi|293378695|ref|ZP_06624853.1| DNA polymerase III, alpha subunit [Enterococcus faecium PC4.1] gi|227180302|gb|EEI61274.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257833568|gb|EEV59989.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12] gi|292642623|gb|EFF60775.1| DNA polymerase III, alpha subunit [Enterococcus faecium PC4.1] Length = 1103 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 338/1036 (32%), Positives = 535/1036 (51%), Gaps = 72/1036 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L +SYSLL+ + + + + ++AITD + L+ A EF + IQPI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEEIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L ++ N G ++ GYQ+L++L SR + ++ Sbjct: 63 IGLHLSYTYEEK----NYG---------LLAYAKDETGYQQLMKLSSRKMIQEK------ 103 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185 ++ I T+ L+ + + + AF FF+ Q + +F Y+ Sbjct: 104 --MALDDMIETDHLVFVVPATHS-VSEAFNKEEHFFSHWQ------FLLENVFTKDFYIG 154 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD- 244 L + + + Q PL A + L +ED A +V+ + + + + Sbjct: 155 LSENTPN---QLPEWYQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESL 211 Query: 245 -RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 P + + YL + EM+ F + L +A+ +A SF Q H +LP + + Sbjct: 212 SAPLPSANGYLISEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQG- 270 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 K+ LR + +E R+ + ++YR+RLD+EL+VI +M F YFLIV Sbjct: 271 ---KQAGEYLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVW 320 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D Sbjct: 321 DVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLD 380 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K IPN Sbjct: 381 IPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPN 440 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 ++ QA + E A L + + LEGL RH STHAAG+VI DR L + Sbjct: 441 QLKITLT-QAYKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLE 499 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 LVP+ R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ L Sbjct: 500 LVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKE 558 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T L T G+FQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI Sbjct: 559 IPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDT 618 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ KK Sbjct: 619 FIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKK 678 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K+ +D++K F+SGA + G S+ AV ++E + KFA+YGFN+SHA AY+ + +Q A++K Sbjct: 679 KKDVLDEEKSHFVSGALQQGYSEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLK 738 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSL 839 H+P F + M N K+K++ +AR+ +++ PS+N F+ V I + L Sbjct: 739 AHHPGAFFTSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGL 798 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKG+ ++ E + PF S++ F R+D + L +L+SL G D +R Sbjct: 799 TAIKGIRRDFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNR 858 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 QL+ L+ K V + I A ++ +D E+ +E + Sbjct: 859 KQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL-------- 908 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGW 1017 G Y SGHP + + ++ + + + I N + L M+ ++ +T+KG + + Sbjct: 909 -GVYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAF 963 Query: 1018 VTFSEPAKEYEANFFP 1033 V ++ + E FP Sbjct: 964 VEGTDSSGEISVTVFP 979 >gi|259500669|ref|ZP_05743571.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners DSM 13335] gi|302191358|ref|ZP_07267612.1| DNA polymerase III, alpha subunit [Lactobacillus iners AB-1] gi|259168053|gb|EEW52548.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners DSM 13335] Length = 1040 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 317/905 (35%), Positives = 494/905 (54%), Gaps = 36/905 (3%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ +S+ ++D AIA+TD N + ++F + A + GI+P++G Sbjct: 6 LQNISSFTLLKSPISIEQLIDSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132 QL I+ + N+ + ++++ GYQ ++ L S + L+ + GK+ + + Sbjct: 66 QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190 L+ LQ+ I+ T + R F+++ + + K+ LY+ + + Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249 Y S V L+ L LVA + ++ D +VL ++ + S +D +T Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDVFLQEVLQSIDDNQ--SIRDGYELTL 231 Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 +HYLK + ++ ++ L EAL NT ++ + ++ P LP+FI+ + D Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 L + A+ GL+ + + I Y RL +EL +I M F+ YFLIV D I Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 + I GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R MPD D+D Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EV+ Y+ +KYG + VAQI++F + AK L DVG A ++ K IP + Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKS 462 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 A FR A S E+++K+EGL RH S HAAG+VI D +++ V Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + ++ +PVTQ K++E GL+K DFLGL LT+L + + + G+K+D+ IP D Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNAFNEVKMSGIKLDMDKIPLD 581 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D T L T IFQ ES G+R AL+ MQP+ +DI+A+ +LYRPGPI NI Y R Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN +EK+V P++ +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+ K E Sbjct: 642 KNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSME 701 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M K F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY A++K HYP Sbjct: 702 MKKIGVDFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 +F A + + + +K+ K+ D + NI+I P +N +F + D I L +I Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSII 821 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G+ IM + +P SL DF ++D+K L+ ++ +L+ +GA D +R LL Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLA 879 Query: 904 SLDNI 908 S +++ Sbjct: 880 SYEDL 884 >gi|227488551|ref|ZP_03918867.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum ATCC 51867] gi|227543156|ref|ZP_03973205.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum ATCC 51866] gi|227091445|gb|EEI26757.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum ATCC 51867] gi|227180965|gb|EEI61937.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum ATCC 51866] Length = 1188 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 342/1018 (33%), Positives = 538/1018 (52%), Gaps = 70/1018 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+G ++ + +++ PA+ +TD N+F + F +K A GI+P Sbjct: 5 SFVHLHNHTEYSMLDGMAKVDLLAEEVKRQGMPAVGMTDHGNMFGSDAFYRKMTAEGIKP 64 Query: 70 IIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118 IIG + + D + N K G+ P + ++ G + L L S Sbjct: 65 IIGIETYMAPDSRFNKKRVLWGE-PHQKRDDVSASGAYLHQTMIAENVTGLKNLFHLSSM 123 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID---RAFFFNSSQVAEKRLLTFK 175 Q + R+ + E EG+I TG SG + R F+ + A R ++ Sbjct: 124 ASYEGQLGKWPRMDAELISE-HAEGIIATTGCPSGDVQTRLRLGQFDEALAAAAR---WQ 179 Query: 176 KLFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 ++G D ++ L H G D R Q++++ LP + TN+ ++ + H+ ++ Sbjct: 180 DIYGKDNFFLELMDH-GLDIERRVRDQLLEIGKRLNLPPLVTNDCHYVLQSQSHDHEAML 238 Query: 233 AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAP 290 V + DR + D +Y+K ++M + ++ P A +NT+ IA R ++ P Sbjct: 239 CVQTGKTLQDPDRFKFGGDGYYIKTAAQMRDTWDNMVPGACDNTLWIAERVGDYSEIWEP 298 Query: 291 ILPRFIEKECDDIQKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 D+ + E + L ++ + GL+ R + Q+Y R +E+ VI Sbjct: 299 --HTHDRMPIADVPEGETPTSWLTHEVMEGLKRRFPDSEVP-----QEYIDRAKYEIEVI 351 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 + YFLIVA+ I+ A+ I VGPGRGS AGS+ AYA+TIT+IDP+ LLFERFL Sbjct: 352 DFKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGSLVAYAMTITNIDPMEHGLLFERFL 411 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466 NP+R S PD DIDF RR E+I Y ++G +++AQ+ITFG+++ K AL+D R Q Sbjct: 412 NPERPSAPDIDIDFDDRRRSEMITYAAERWGADKIAQVITFGTVKTKQALKDSARVQFGQ 471 Query: 467 MPYSQVDRLCKLIPNDPA---HPVSLQAIAD--DSRFREARL------ADPSVDRLLEIS 515 Y DR+ KL+P PA ++L+ I D D R+ EA DP V ++ E + Sbjct: 472 PGYQIADRVTKLLP--PAIMGKDITLKGIVDPNDKRYNEAGEVRQLIETDPDVRKIFETA 529 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + LEG+ R A HA +++ PL + +PM++ + +T + E GL+K DFLG Sbjct: 530 RGLEGVVRQAGVHACAVIMACVPLMEHIPMWKRAQDGAIITGWPYPACEAIGLLKMDFLG 589 Query: 576 LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L+ LT+L +L+ + + RG V L + +D E Y LL TLG+FQL+ GMR+ L Sbjct: 590 LRNLTVLNDALENIKENRGETVVLEDLTYDAPEVYDLLGRGDTLGVFQLDGGGMRELLRR 649 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQGV 688 M+P +DI+A ++LYRPGP+ + + Y +RKNGK+ I IHP L +P+ L +T G+ Sbjct: 650 MKPTGFDDIVAALALYRPGPMGMNAHMDYADRKNGKKPIEPIHPELAEPLEEILHDTYGL 709 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQ+M+I+Q ++ YS EAD R+AMGKK E + KQ +F G NG S+ Sbjct: 710 IVYQEQIMKISQKVANYSAGEADTFRKAMGKKKPEVLKKQYAKFSGGMKDNGYSQDAIDA 769 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++ + FA Y FNKSHAA Y+V+SY TA+MKT Y E++AA +T DN +K + D Sbjct: 770 LWGTIEPFASYAFNKSHAAGYSVVSYWTAYMKTFYTQEYMAALLTSVGDNKDKSAIYLAD 829 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLED 867 R I+++PP VN +F+ + + + L A++ VG I++ +K F S D Sbjct: 830 CRHLGIKVLPPDVNASLQNFQAVGDDVRFGLGAVRNVGADVVDSIVKTRKEKGDFTSFSD 889 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 + ++++ N+RV ESL+ AGA D G+ R L ++ +K ++F Sbjct: 890 YLDKIETLPCNKRVTESLIKAGAFDSLGHPRKGLALIHEDAVDSVISTKKAADKGQFDLF 949 Query: 928 AH----------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 A E F ++ E++ ++ + E+ +LG Y SGHPLD Y+ L Sbjct: 950 AGLGGGDSAGGVEPSVFDVQVPDEEWDRKH---KLALEREMLGLYVSGHPLDGYEAAL 1004 >gi|282899282|ref|ZP_06307253.1| DNA polymerase III, alpha subunit [Cylindrospermopsis raciborskii CS-505] gi|281195851|gb|EFA70777.1| DNA polymerase III, alpha subunit [Cylindrospermopsis raciborskii CS-505] Length = 893 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 308/822 (37%), Positives = 474/822 (57%), Gaps = 83/822 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GI 67 SFV L +HS YSLL+GA + ++++ A ++A+TD ++ A+E K C + G Sbjct: 2 SFVPLHLHSDYSLLDGASQIPELVEQAIALGMNSLALTDHGVMYGAIELI-KICRSKPGF 60 Query: 68 QPIIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 +PIIG ++ DI+ Q+ +Q V+L +GY+ L++L + +L Sbjct: 61 KPIIGNEMYIINGDIEKQERRARYHQ-----------VVLAKNTKGYKNLVKLTTISHLK 109 Query: 123 D-QGKQSV-RICLS--WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 QGK R C++ L+E EGLI+ + +G I +A + A K +K++F Sbjct: 110 GTQGKGIFSRPCINKDLLKE-HKEGLIVTSACLAGEIPQALLGGKLEKARKVATWYKEVF 168 Query: 179 GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 G+ Y+ +Q H DR ++V++A ++ +ATN+S ++S D EAHD L+ + Sbjct: 169 GEDFYLEIQDHGSQEDRIVNVELVKIARELDIKFIATNDSHYISCFDVEAHDALLCIQTG 228 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPI 291 +++ R R + YLK+ EM +F D + EA+ T E+A + + P Sbjct: 229 KLIADDKRMRYSGTEYLKSTQEMQLLFRDHLTDDVIAEAIATTTEVAEKVEVYNIMDEPK 288 Query: 292 LPR--FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNV 347 +P D EE A GL RL + K + D Y++RL++EL + Sbjct: 289 IPAPPIPTGHTPDTYTEE------VAWQGLLKRLNR----KSRNEVDTVYKERLEYELKM 338 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M FS YFL+V D+I++A+ +NIPVGPGRGS AGS+ AYA+ IT+IDP+ LLFERF Sbjct: 339 IEQMGFSSYFLVVWDYIKFARDHNIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERF 398 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R SMPD D DFC ++RD+VI YV KYG ++VAQIITF L +KA L+DV R L + Sbjct: 399 LNPERKSMPDIDTDFCIEKRDQVISYVTEKYGVDKVAQIITFNRLTSKAVLKDVARVLDI 458 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYR 523 PY + D++ K+IP P L+ + D F+ + V R ++++ ++EG + Sbjct: 459 PYGEADKMAKMIPVVRGKPTKLKVMISDETPEPEFKAKYDKEQHVRRWIDMAMRIEGTNK 518 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+VI PL ++VP+ ++ + +TQ+ M+ +E GL+K DFLGL+ LTL+Q Sbjct: 519 TFGVHAAGVVISSEPLDEIVPLQKNNDGSV-ITQYFMEDLESLGLLKMDFLGLRNLTLIQ 577 Query: 584 KSLDFLAQ-RGVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQL 623 K++D + Q RG +D S +P D + Y LL + G+FQL Sbjct: 578 KTIDLIEQNRGYTIDPDDITRQERKAQKILAKGEYSTLPKDVAQAYSLLESGDLEGVFQL 637 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPM 681 ESSGM+Q + ++P IEDI ++++LYRPGP+D ++ + NRK+G+E I ++ P+ Sbjct: 638 ESSGMKQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGREPIDYESQILQPI 697 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L ET G+++YQEQ+M+IAQ ++GYSL +AD+LRRAMGKK EM KQ+E+FI GA+KNG+ Sbjct: 698 LNETYGIMVYQEQIMKIAQDMAGYSLGQADLLRRAMGKKKVAEMQKQQEKFIDGATKNGV 757 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 K +A +F + KFA+Y +SY+T + Y Sbjct: 758 KKQVAEQLFADMLKFAEY-----------CLSYETEVLTLEY 788 >gi|309804153|ref|ZP_07698231.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV 11V1-d] gi|325912830|ref|ZP_08175208.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 60-B] gi|308163736|gb|EFO66005.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV 11V1-d] gi|325477823|gb|EGC80957.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 60-B] Length = 1040 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 319/906 (35%), Positives = 495/906 (54%), Gaps = 38/906 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ +S+ ++ AIA+TD N + ++F + A + GI+P++G Sbjct: 6 LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKMAKSEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132 QL I+ + N+ + ++++ GYQ ++ L S + L+ + GK+ + + Sbjct: 66 QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115 Query: 133 LSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRH 189 L+ LQ+ +G +I S D F+++ + + K+ LY+ + Sbjct: 116 LNKLQKYLGNLHIITTANQHSELCD--LFYHNFDLMPDYIRKLAKILPQSSNLYLGVFAD 173 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + Y S V L+ L LVA + ++ D +VL ++ + S KD +T Sbjct: 174 KSESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLQSIDDNQ--SIKDGYELT 230 Query: 250 ----PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +HYLK + ++ ++ L EAL NT ++ + ++ P LP+FI+ + D Sbjct: 231 LKHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD-- 288 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 L + A+ GL+ + + I Y RL +EL +I M F+ YFLIV D Sbjct: 289 --TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDV 341 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I + I GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R MPD D+D Sbjct: 342 INYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIP 401 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+EV+ Y+ +KYG + VAQI++F + AK L DVG A ++ K IP Sbjct: 402 DNRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSK 461 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + A FR A S E+++K+EGL RH S HAAG+VI D +++ V Sbjct: 462 SKITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTV 521 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 + ++ +PVTQ K++E GL+K DFLGL LT+L +L+ + G+K+D+ IP Sbjct: 522 GL-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPL 580 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD T L T IFQ ES G+R AL+ MQP+ +DI+A+ +LYRPGPI NI Y Sbjct: 581 DDPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIR 640 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RKN +EK+V P++ +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+ K Sbjct: 641 RKNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSM 700 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM K F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY A++K HY Sbjct: 701 EMKKIGVDFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHY 760 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842 P +F A + + + +K+ K+ D + NI+I P +N +F + D I L +I Sbjct: 761 PKQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSI 820 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 G+ IM + +P SL DF ++D+K L+ ++ +L+ +GA D +R LL Sbjct: 821 IGLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALL 878 Query: 903 QSLDNI 908 S +++ Sbjct: 879 ASYEDL 884 >gi|300858796|ref|YP_003783779.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis FRC41] gi|300686250|gb|ADK29172.1| DNA polymerase III alpha subunit [Corynebacterium pseudotuberculosis FRC41] gi|302206501|gb|ADL10843.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis C231] gi|302331056|gb|ADL21250.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis 1002] gi|308276743|gb|ADO26642.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis I19] Length = 1186 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 336/1020 (32%), Positives = 531/1020 (52%), Gaps = 67/1020 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ YS+L+G ++ + +++ PA+ +TD N+F + F + Sbjct: 1 MAKKSSFVHLHNHTEYSMLDGMAKVDMLAEEVLRQGMPAVGMTDHGNMFGSDAFYRTMKK 60 Query: 65 AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AG++PIIG + + D + N G+ P + +L AEG + L Sbjct: 61 AGVKPIIGIEAYMAPDSRFNKTRVRWGE-PHQKSDDVSASGAYLHQTMLAENAEGLRNLF 119 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R+ + E + G+I TG SG + A + Sbjct: 120 YLSSMASYEGQLGKWPRMDADLIAEHAS-GIIATTGCPSGDVQTRLRLGQFDQALEAAAM 178 Query: 174 FKKLFG-DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++ ++G + ++ L H +R R S+++++ +LP + TN+ ++ E AH+ Sbjct: 179 WQDIYGKENYFLELMDHGLEIENRVR-SELLEIGRKLDLPPLVTNDCHYVLESQAPAHEA 237 Query: 231 LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVH 288 ++ V +S DR + +Y+K +M ++ L PEA +NT+ IA R +Q + Sbjct: 238 MLCVQTGKTLSDPDRFKFDGSGYYIKTAEQMREMWDSLVPEACDNTLWIAER----VQDY 293 Query: 289 APILPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 I E + LR++ + GL VR G + Q Y R ++E Sbjct: 294 GEIWEEHTHDRMPIADVPEGHTPTSWLRHEVLEGLRVRFNGGEVP-----QSYIDRAEYE 348 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 ++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLF Sbjct: 349 ISVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHDLLF 408 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K A++D R Sbjct: 409 ERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARV 468 Query: 465 L--QMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVD 509 Q Y DR+ K +P DP HP +A R DP V Sbjct: 469 QYGQPGYQIADRITKELPPAIMAKDIPLSGIMDPEHPRYGEA----GEVRNLIETDPDVK 524 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 ++ + ++ LEG+ R A HA +++ PL + +PM++ +T + E GL+ Sbjct: 525 KIYDTARGLEGVVRQAGVHACAVIMASVPLLEHIPMWKRAADGALITGWPYPACEAIGLL 584 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ LT++ ++ + R VDL + DD + Y LL++ TLG+FQL+S GM Sbjct: 585 KMDFLGLRNLTVIGDCIENIKINRKETVDLEELTTDDPKVYELLSSGDTLGVFQLDSGGM 644 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLID----PML 682 ++ L+ MQP DI+A ++LYRPGP ++ Y +RKNG++ I IHP +D +L Sbjct: 645 QELLKRMQPTGFHDIVASLALYRPGPMGVNAHWDYADRKNGRKPIEPIHPELDEPLREIL 704 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 ET G+I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + KQ ++F+ G NG S Sbjct: 705 DETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKQPEVLAKQYDKFLEGMLSNGYS 764 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 K ++ + FA Y FNKSHAA Y ++SY TA++K +Y E++AA +T D +K Sbjct: 765 KGAVDALWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKS 824 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861 + + R I ++ P VN ++F N I + L A++ VG I++A +K Sbjct: 825 AIYLSNCRHLGISVLSPDVNESRLNFLPVGNDIRFGLGAVRNVGEDVVNSIVKARQEKGG 884 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F D+ ++D+ N+RV ESL+ AGA D G+ R LL ++ +K Sbjct: 885 FSDFSDYLDKIDTVACNKRVTESLIKAGAFDSLGHPRKGLLLIHEDAVDSVISTKKAADK 944 Query: 922 KHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPIL 975 ++FA G D F+V+ +++ E+ +LG Y SGHPLD Y+ L Sbjct: 945 GQFDLFAGFGG--DDASMGNAFAVQIPEAQWDRKHQLALEREMLGLYVSGHPLDGYEEAL 1002 >gi|312871433|ref|ZP_07731528.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 3008A-a] gi|311093086|gb|EFQ51435.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 3008A-a] Length = 1040 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 318/901 (35%), Positives = 491/901 (54%), Gaps = 36/901 (3%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ +S+ ++ AIA+TD N + ++F + A + GI+P++G Sbjct: 6 LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132 QL I+ + N+ + ++++ GYQ ++ L S + L+ + GK+ + + Sbjct: 66 QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190 L+ LQ+ I+ T + R F+++ + + K+ LY+ + + Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249 Y S V L+ L LVA + ++ D +VL ++ + S +D +T Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLQSIDDNQ--SIRDGYELTL 231 Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 +HYLK + ++ ++ L EAL NT ++ + ++ P LP+FI+ + D Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 L + A+ GL+ + + I Y RL +EL +I M F+ YFLIV D I Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 + I GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R MPD D+D Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARQQMPDIDLDIPD 402 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EV+ Y+ +KYG + VAQI++F + AK L DVG A ++ K IP + Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKS 462 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 A FR A S E+++K+EGL RH S HAAG+VI D +++ V Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + ++ +PVTQ K++E GL+K DFLGL LT+L +L+ + G+K+D+ IP D Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLD 581 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D T L T IFQ ES G+R AL+ MQP+ +DI+A+ +LYRPGPI NI Y R Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN +EK+V P++ +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+ K E Sbjct: 642 KNKEEKVVYPDPVLINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSIE 701 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M K F++ A K G S + A +IFE + KF++YGFNKSH+ AY+ +SY A++K HYP Sbjct: 702 MKKIGVDFVNRAVKQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 +F A + + + +K+ K+ D + NI+I P +N +F + D I L +I Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKLDNIKITLPDINYSKRNFYISDKGEIVTGLNSIL 821 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G+ IM + +P SL DF ++D+K L+ ++ +L+ +GA D +R LL Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLA 879 Query: 904 S 904 S Sbjct: 880 S 880 >gi|312872348|ref|ZP_07732418.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2062A-h1] gi|312875479|ref|ZP_07735482.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2053A-b] gi|325911984|ref|ZP_08174386.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 143-D] gi|311088990|gb|EFQ47431.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2053A-b] gi|311092171|gb|EFQ50545.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2062A-h1] gi|325476169|gb|EGC79333.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 143-D] Length = 1040 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 317/905 (35%), Positives = 493/905 (54%), Gaps = 36/905 (3%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ +S+ ++ AIA+TD N + ++F + A + GI+P++G Sbjct: 6 LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132 QL I+ + N+ + ++++ GYQ ++ L S + L+ + GK+ + + Sbjct: 66 QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190 L+ LQ+ I+ T + R F+++ + + K+ LY+ + + Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249 Y S V L+ L LVA + ++ D +VL ++ + S +D +T Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQ--SIRDGYELTL 231 Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 +HYLK + ++ ++ L EAL NT ++ + ++ P LP+FI+ + D Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 L + A+ GL+ + + I Y RL +EL +I M F+ YFLIV D I Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 + I GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R MPD D+D Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EV+ Y+ +KYG + VAQI++F + AK L DVG A ++ K IP + Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKS 462 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 A FR A S E+++K+EGL RH S HAAG+VI D +++ V Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + ++ +PVTQ K++E GL+K DFLGL LT+L +L+ + G+K+D+ IP D Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLD 581 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D T L T IFQ ES G+R AL+ MQP+ +DI+A+ +LYRPGPI NI Y R Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN +EK+V P++ +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+ K E Sbjct: 642 KNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSME 701 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M K F++ A + G S A +IFE + KF++YGFNKSH+ AY+ +SY A++K HYP Sbjct: 702 MKKIGVDFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 +F A + + + +K+ K+ D + NI+I P +N +F + D I L +I Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSII 821 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G+ IM + +P SL DF ++D+K L+ ++ +L+ +GA D +R LL Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLA 879 Query: 904 SLDNI 908 S +++ Sbjct: 880 SYEDL 884 >gi|329921313|ref|ZP_08277751.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN 1401G] gi|328934605|gb|EGG31109.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN 1401G] Length = 1040 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 316/905 (34%), Positives = 493/905 (54%), Gaps = 36/905 (3%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ +S+ ++ AIA+TD N + ++F + A + GI+P++G Sbjct: 6 LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132 QL I+ + N+ + ++++ GYQ ++ L S + L+ + GK+ + + Sbjct: 66 QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190 L+ LQ+ I+ T + R F+++ + + K+ LY+ + + Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249 Y S V L+ L LVA + ++ D +VL ++ + S +D +T Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDVFLQEVLQSIDDNQ--SIRDGYELTL 231 Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 +HYLK + ++ ++ L EAL NT ++ + ++ P LP+FI+ + D Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 L + A+ GL+ + + I Y RL +EL +I M F+ YFLIV D I Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 + I GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R MPD D+D Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EV+ Y+ +KYG + VAQI++F + AK L DVG A ++ K IP + Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKS 462 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 A FR A S E+++K+EGL RH S HAAG+VI D +++ V Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + ++ +PVTQ K++E GL+K DFLGL LT+L + + + G+K+D+ IP D Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNAFNEVKMSGIKLDMDKIPLD 581 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D T L T IFQ ES G+R AL+ MQP+ +DI+A+ +LYRPGPI NI Y R Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN +EK+V P++ +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+ K E Sbjct: 642 KNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSME 701 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M K F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY A++K HYP Sbjct: 702 MKKIGVDFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 +F A + + + +K+ K+ D + NI+I P +N +F + D I L +I Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSII 821 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G+ IM + +P SL DF ++D+K L+ ++ +L+ +GA D +R LL Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLA 879 Query: 904 SLDNI 908 S +++ Sbjct: 880 SYEDL 884 >gi|283470969|emb|CAQ50180.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus ST398] Length = 1065 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 288/772 (37%), Positives = 442/772 (57%), Gaps = 40/772 (5%) Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327 PE IA++C L+ H +LP++ + D+ K+ + + LE+ Sbjct: 210 PEYFTQADRIAQKCDAELKYHQSLLPQY-QAPNDESAKKYLWRVLVTQLKKLEL------ 262 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387 + Y +RL +E VI M F YFLIV+D I +AK N++ VGPGRGS AGS+ + Sbjct: 263 -----NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVS 317 Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR++VI+YVQ KYG V+ I+ Sbjct: 318 YLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQEKYGELHVSGIV 377 Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507 TFG L A+A RDVGR + ++ + LIP+ ++L F++ + Sbjct: 378 TFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHR 435 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 +R I +KLEGL RH STHAAGI+I D PL + P+ + L TQ+ M E+ G Sbjct: 436 HERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIG 493 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGL+ L+++ + L + + G+ +D+ IPFDD + + LL+ T GIFQLES Sbjct: 494 LLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESD 553 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ +HP ++P+LK T Sbjct: 554 GVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTY 613 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ FI GA +NG + I+ Sbjct: 614 GVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDIS 673 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A ++ + + +K + Sbjct: 674 KQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMI 733 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865 ++A++ I I+PP++N +K IY S+ IKGVG + + I+E + F Sbjct: 734 EEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVEERYQNGKFKDF 793 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF R+ + R++LE+L+ GA D FG +R LLQ++D V N ++ Sbjct: 794 FDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQD 846 Query: 926 IFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 F + K + DK L + + E+ LGFY S HP+D K + K + Sbjct: 847 GFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD--KKFVAKQYLT 898 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ S A NN + +Q +T+ G + +VT ++ + + FP Sbjct: 899 IFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 947 Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63 Query: 73 CQL 75 + Sbjct: 64 MTI 66 >gi|116629535|ref|YP_814707.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri ATCC 33323] gi|238852685|ref|ZP_04643095.1| DNA polymerase III subunit alpha [Lactobacillus gasseri 202-4] gi|311110823|ref|ZP_07712220.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri MV-22] gi|116095117|gb|ABJ60269.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus gasseri ATCC 33323] gi|238834831|gb|EEQ27058.1| DNA polymerase III subunit alpha [Lactobacillus gasseri 202-4] gi|311065977|gb|EFQ46317.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri MV-22] Length = 1038 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 334/1031 (32%), Positives = 541/1031 (52%), Gaps = 51/1031 (4%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 V LQ SS++LLE + ++ + A+A+TD N + + F + A GI+P++ Sbjct: 4 VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIKPLL 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVR 130 G QL I+ G ++++ +GY+ ++ L S + LL + G++ Sbjct: 64 GMQLRIN----------GLIDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113 Query: 131 ICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQ 187 + L L++ +G L+++T + + N+ + R+L +Y+ + Sbjct: 114 LELEELKKYLGH--LVIITPSNLHSELKMLQTNNPNMGANYVRILKDAVPTSSLVYLGVY 171 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246 +G Y + + LA EL L A + +L+ + L A+ +T + ++ Sbjct: 172 ADQGQQEYI-NYLRSLATQFELSLAAVEDGQYLNRNEQFLRRTLQAIKSNTHLENVEQLA 230 Query: 247 RVTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + HYLK E+ + ++ +ALEN +I + C+ + P LP+F + + Sbjct: 231 KQAGSHYLKTSEELQVNYRKFEIEDALENAEKIGQLCNAKITFQDPQLPKFKQNKF---- 286 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L + A GL R KG + Y++RLD+EL VI M F YFLIV D + Sbjct: 287 PTSKEYLHSLAQNGLAKRF------KGQIPERYQKRLDYELKVINEMGFDDYFLIVWDVM 340 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A +I GPGRGS AGS+ +YAL IT++DPL ++LLFERFLNP R MPD D+D Sbjct: 341 NFAHSVHITTGPGRGSAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPD 400 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RRDEVI+Y+ KYG AQI+TFG+L AK L+DV R + + R IP+ Sbjct: 401 NRRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKG 460 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +A + + L ++ LE L RH S HAAG+VI D L+++V Sbjct: 461 KITLAEAYQKSKELQLLVNTNTFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVG 520 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + +PVTQ +E GL+K DFLGL+ LT+L + L GV++D + IP + Sbjct: 521 LQAGPLG-IPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIIAALKSEGVEIDPNQIPLN 579 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D ET L T +FQ ES G+++ LE + PD EDI+A+ +LYRPGP++NI + NR Sbjct: 580 DQETLALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIGHFINR 639 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GKE++ P + +L T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK + Sbjct: 640 KHGKERVQYPDPSLKKILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADV 699 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + K++E+FI GA K G K +A +++ +A+FA+YGFN+SHA AY+ I++ A+ K HYP Sbjct: 700 IQKEREKFIQGAVKLGRRKEVAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYP 759 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 F + + + N KI ++ A++ I+ +PP + DF + + +I L AI+G Sbjct: 760 GAFYLSLLNSNIGNRNKIAQYLMQAQEAGIKTLPPDIENSQADFSLENGKILVGLKAIRG 819 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 + + + I+E +P S+ DF ++D+ L+ + +L+ AGA D +R +LL+ Sbjct: 820 LRSDLLKQILEIK--RPIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKI 877 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQRVLGFY 962 ++ + + N + +F T KI EK + E S++ E +GF Sbjct: 878 NKDLVESVKMAGSNLS-----LFE----TLEPKIEEEKMPTAAEKSAMEVE----AMGFS 924 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 +P+ + RK K + + +G I + ++ K Q T+KG + + FS+ Sbjct: 925 TGINPIIAVQKYARKYNAKRLQAFESNEQG--IAVGKLMRIK-QITTKKGDNMAFAVFSD 981 Query: 1023 PAKEYEANFFP 1033 + + + FP Sbjct: 982 SSGDKDFTIFP 992 >gi|312873990|ref|ZP_07734026.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2052A-d] gi|311090539|gb|EFQ48947.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2052A-d] Length = 1040 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 317/905 (35%), Positives = 492/905 (54%), Gaps = 36/905 (3%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ +S+ ++ AIA+TD N + ++F + A + GI+P++G Sbjct: 6 LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132 QL I+ + N+ + ++++ GYQ ++ L S + L+ + GK+ + + Sbjct: 66 QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190 L+ LQ+ I+ T + R F+++ + + K+ LY+ + + Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLVKILPQSSNLYLGVFADK 174 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249 Y S V L+ L LVA + ++ D +VL ++ + S +D +T Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQ--SIRDGYELTL 231 Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 +HYLK + ++ ++ L EAL NT ++ + ++ P LP+FI+ + D Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 L + A+ GL+ + + I Y RL +EL +I M F+ YFLIV D I Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 + I GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R MPD D+D Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EV+ Y+ +KYG + VAQI++F + AK L DVG A +D K IP + Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITIDSWLKAIPKSKS 462 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 A F A S E+++K+EGL RH S HAAG+VI D +++ V Sbjct: 463 KITLSDAYKLSKDFWMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + ++ +PVTQ K++E GL+K DFLGL LT+L +L+ + G+K+D+ IP D Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLD 581 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D T L T IFQ ES G+R AL+ MQP+ +DI+A+ +LYRPGPI NI Y R Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN +EK+V P++ +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+ K E Sbjct: 642 KNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSME 701 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M K F++ A + G S A +IFE + KF++YGFNKSH+ AY+ +SY A++K HYP Sbjct: 702 MKKIGVDFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 +F A + + + +K+ K+ D + NI+I P +N +F + D I L +I Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSII 821 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G+ IM + +P SL DF ++D+K L+ ++ +L+ +GA D +R LL Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLA 879 Query: 904 SLDNI 908 S +++ Sbjct: 880 SYEDL 884 >gi|297590764|ref|ZP_06949402.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus MN8] gi|297575650|gb|EFH94366.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus MN8] Length = 1065 Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust. Identities = 287/772 (37%), Positives = 442/772 (57%), Gaps = 40/772 (5%) Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327 PE IA++C+ L+ H +LP++ + D+ K+ + + LE+ Sbjct: 210 PEYFTQADRIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVLVTQLKKLEL------ 262 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387 + Y +RL +E VI M F YFLIV+D I +AK N++ VGPGRGS AGS+ + Sbjct: 263 -----NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVS 317 Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR++VI+YVQ KYG V+ I+ Sbjct: 318 YLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQEKYGELHVSGIV 377 Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507 TFG L A+A RDVGR + ++ + LIP+ ++L F++ + Sbjct: 378 TFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHR 435 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 +R I +KLEGL RH STHAAGI+I D PL + P+ + L TQ+ M E+ G Sbjct: 436 HERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIG 493 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGL+ L+++ + L + + G+ +D+ IPFDD + + LL+ T GIFQLES Sbjct: 494 LLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESD 553 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ +HP ++P+LK T Sbjct: 554 GVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTY 613 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ FI G +NG + I+ Sbjct: 614 GVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGTKQNGYHEDIS 673 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A ++ + + +K + Sbjct: 674 KQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMI 733 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865 ++A++ I I+PP++N +K IY S+ IKGVG + + I+E + F Sbjct: 734 EEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVEERYQNGKFKDF 793 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF R+ + R++LE+L+ GA D FG +R LLQ++D V N ++ Sbjct: 794 FDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQD 846 Query: 926 IFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 F + K + DK L + + E+ LGFY S HP+D K + K + Sbjct: 847 GFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD--KKFVAKQYLT 898 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ S A NN + +Q +T+ G + +VT ++ + + FP Sbjct: 899 IFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 947 Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63 Query: 73 CQL 75 + Sbjct: 64 MTI 66 >gi|315653496|ref|ZP_07906417.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners ATCC 55195] gi|315489187|gb|EFU78828.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners ATCC 55195] Length = 1040 Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust. Identities = 316/905 (34%), Positives = 492/905 (54%), Gaps = 36/905 (3%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ +S+ ++ AIA+TD N + ++F + A + GI+P++G Sbjct: 6 LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132 QL I+ + N+ + ++++ GYQ ++ L S + L+ + GK+ + + Sbjct: 66 QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190 L+ LQ+ I+ T + R F+++ + + K+ LY+ + + Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249 Y S V L+ L LVA + ++ D +VL ++ + S +D +T Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLQSIDDNQ--SIRDGYELTL 231 Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 +HYLK + ++ ++ L EAL NT ++ + ++ P LP+FI+ + D Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFD--- 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 L + A+ GL+ + + I Y RL +EL +I M F+ YFLIV D I Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----AKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 + I GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R MPD D+D Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EV+ Y+ +KYG + VAQI++F + AK L DVG A ++ IP + Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQNAIPKSKS 462 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 A FR A S E+++K+EGL RH S HAAG+VI D +++ V Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + ++ +PVTQ K++E GL+K DFLGL LT+L +L+ + G+K+D+ IP D Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLD 581 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D T L T IFQ ES G+R AL+ MQP+ +DI+A+ +LYRPGPI NI Y R Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN +EK+V P++ +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+ K E Sbjct: 642 KNREEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSME 701 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M K F++ A + G S A +IFE + KF++YGFNKSH+ AY+ +SY A++K HYP Sbjct: 702 MKKIGVDFVNRAVQQGHSAVAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 +F A + + + +K+ K+ D + NI+I P +N +F + D I L +I Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSII 821 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G+ IM + +P SL DF ++D+K L+ ++ +L+ +GA D +R LL Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLA 879 Query: 904 SLDNI 908 S +++ Sbjct: 880 SYEDL 884 >gi|309809270|ref|ZP_07703139.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN 2503V10-D] gi|308170383|gb|EFO72407.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN 2503V10-D] Length = 1040 Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust. Identities = 317/901 (35%), Positives = 489/901 (54%), Gaps = 36/901 (3%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ +S+ ++ AIA+TD N + ++F + A + GI+P++G Sbjct: 6 LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132 QL I+ + N+ + ++++ GYQ ++ L S + L+ + GK+ + + Sbjct: 66 QLRIN-----GLINENQNF-----DLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRHR 190 L+ LQ+ I+ T + R F+++ + + K+ LY+ + + Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLVKILPQSSNLYLGVFADK 174 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249 Y S V L+ L LVA + ++ D +VL ++ + S +D +T Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQ--SIRDGYELTL 231 Query: 250 ---PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 +HYLK + ++ ++ L EAL NT +++ + ++ P LP+FI+ + D Sbjct: 232 KHVGNHYLKTKDKLCESYNSLGILEALRNTKQVSDDSNIEIKFTMPQLPKFIQHKFD--- 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 L + A+ GL+ + + I Y RL +EL +I M F+ YFLIV D I Sbjct: 289 -TSYEFLHHLAMTGLQAKFNKHDIP-----SKYLNRLKYELKIIDEMGFNDYFLIVWDVI 342 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 + I GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R MPD D+D Sbjct: 343 NYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPD 402 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EV+ Y+ +KYG + VAQI++F + AK L DVG A +D K IP + Sbjct: 403 NRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITIDSWLKAIPKSKS 462 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 A FR A S E+++K+EGL RH S HAAG+VI D +++ V Sbjct: 463 KITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVG 522 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 + ++ +PVTQ K++E GL+K DFLGL LT+L +L+ + G+K+D+ IP D Sbjct: 523 L-QNGSLGIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLD 581 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D T L T IFQ ES G+R AL+ MQP+ +DI+A+ +LYRPGPI NI Y R Sbjct: 582 DPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRR 641 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 KN +E +V P++ +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+ K E Sbjct: 642 KNKEENVVYPDPVLINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSIE 701 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M K F++ A + G S A +IFE + KF++YGFNKSH+ AY+ +SY A++K HYP Sbjct: 702 MKKIGVDFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYP 761 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 +F A + + + +K+ K+ D + NI+I P +N +F + D I L +I Sbjct: 762 KQFYVALLNSNIYDKQKVTKYIMDLKLDNIKITLPDINYSKRNFYISDKGEIVTGLNSIL 821 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G+ IM + +P SL DF ++D+K L ++ +L+ +GA D +R LL Sbjct: 822 GLRMDFVEQIM--NLQRPIKSLTDFLWKIDTKYLLPDMIGNLIKSGAFDKLHKNRSALLA 879 Query: 904 S 904 S Sbjct: 880 S 880 >gi|49483944|ref|YP_041168.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|282906098|ref|ZP_06313953.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus Btn1260] gi|282909013|ref|ZP_06316831.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911329|ref|ZP_06319131.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus WBG10049] gi|283958453|ref|ZP_06375904.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|295428273|ref|ZP_06820902.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus EMRSA16] gi|60392207|sp|Q6GG04|DPO3A_STAAR RecName: Full=DNA polymerase III subunit alpha gi|49242073|emb|CAG40772.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|282325024|gb|EFB55334.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus WBG10049] gi|282327277|gb|EFB57572.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331390|gb|EFB60904.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus Btn1260] gi|283790602|gb|EFC29419.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|295127673|gb|EFG57310.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus EMRSA16] gi|312437840|gb|ADQ76911.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus TCH60] gi|315195607|gb|EFU25994.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus CGS00] Length = 1065 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 287/772 (37%), Positives = 442/772 (57%), Gaps = 40/772 (5%) Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327 PE IA++C+ L+ H +LP++ + D+ K+ + + LE+ Sbjct: 210 PEYFTQADRIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVLVTQLKKLEL------ 262 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387 + Y +RL +E VI M F YFLIV+D I +AK N++ VGPGRGS AGS+ + Sbjct: 263 -----NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVS 317 Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR++VI+YVQ KYG V+ I+ Sbjct: 318 YLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQEKYGELHVSGIV 377 Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507 TFG L A+A RDVGR + ++ + LIP+ ++L F++ + Sbjct: 378 TFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHR 435 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 +R I +KLEGL RH STHAAGI+I D PL + P+ + L TQ+ M E+ G Sbjct: 436 HERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIG 493 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGL+ L+++ + L + + G+ +D+ IPFDD + + LL+ T GIFQLES Sbjct: 494 LLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESD 553 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ +HP ++P+LK T Sbjct: 554 GVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTY 613 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ FI G +NG + I+ Sbjct: 614 GVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGTKQNGYHEDIS 673 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A ++ + + +K + Sbjct: 674 KQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMI 733 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865 ++A++ I I+PP++N +K IY S+ IKGVG + + I+E + F Sbjct: 734 EEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVEERYQNGKFKDF 793 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF R+ + R++LE+L+ GA D FG +R LLQ++D V N ++ Sbjct: 794 FDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQD 846 Query: 926 IFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 F + K + DK L + + E+ LGFY S HP+D K + K + Sbjct: 847 GFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD--KKFVAKQYLT 898 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ S A NN + +Q +T+ G + +VT ++ + + FP Sbjct: 899 IFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 947 Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63 Query: 73 CQL 75 + Sbjct: 64 MTI 66 >gi|282919466|ref|ZP_06327201.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus C427] gi|282317276|gb|EFB47650.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus C427] Length = 1065 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 287/772 (37%), Positives = 442/772 (57%), Gaps = 40/772 (5%) Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327 PE IA++C+ L+ H +LP++ + D+ K+ + + LE+ Sbjct: 210 PEYFTQADRIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVLVTQLKKLEL------ 262 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387 + Y +RL +E VI M F YFLIV+D I +AK N++ VGPGRGS AGS+ + Sbjct: 263 -----NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVS 317 Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR++VI+YVQ KYG V+ I+ Sbjct: 318 YLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQEKYGELHVSGIV 377 Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507 TFG L A+A RDVGR + ++ + LIP+ ++L F++ + Sbjct: 378 TFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHR 435 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 +R I +KLEGL RH STHAAGI+I D PL + P+ + L TQ+ M E+ G Sbjct: 436 HERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIG 493 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGL+ L+++ + L + + G+ +D+ IPFDD + + LL+ T GIFQLES Sbjct: 494 LLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESD 553 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ +HP ++P+LK T Sbjct: 554 GVRSVLKKLKPEHYEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTY 613 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ FI G +NG + I+ Sbjct: 614 GVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGTKQNGYHEDIS 673 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A ++ + + +K + Sbjct: 674 KQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMI 733 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865 ++A++ I I+PP++N +K IY S+ IKGVG + + I+E + F Sbjct: 734 EEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVEERYQNGKFKDF 793 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF R+ + R++LE+L+ GA D FG +R LLQ++D V N ++ Sbjct: 794 FDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQD 846 Query: 926 IFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 F + K + DK L + + E+ LGFY S HP+D K + K + Sbjct: 847 GFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD--KKFVAKQYLT 898 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ S A NN + +Q +T+ G + +VT ++ + + FP Sbjct: 899 IFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 947 Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63 Query: 73 CQL 75 + Sbjct: 64 MTI 66 >gi|222151616|ref|YP_002560772.1| DNA polymerase III alpha chain [Macrococcus caseolyticus JCSC5402] gi|222120741|dbj|BAH18076.1| DNA polymerase III alpha chain [Macrococcus caseolyticus JCSC5402] Length = 1051 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 333/966 (34%), Positives = 521/966 (53%), Gaps = 92/966 (9%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL VHS+Y LL + ++ ++ ++ ++ A+A+TD N LF F + AA I+PII Sbjct: 6 VHLNVHSAYDLLHSTVEIDALVTRVTELKEHAVALTDFNVLFGVQSFYKACIAADIKPII 65 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G ++I + D LK V L GY LI+L SR+ L + V + Sbjct: 66 G--MEICVTDGLKQLRA-----------VCLARNNTGYVNLIKLSSRIQL-----KGVEL 107 Query: 132 C-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189 L WL + + +++ + S + L KK++ D LY+ Sbjct: 108 TPLKWLSQYQSGIIVIFKSITESESHFTQGIESYYICHNSSLDAKKVYIEDVLYL----- 162 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ES VQ + L + N L L ++ + T Sbjct: 163 -------ESSGVQ--HLEVLNAIEENKKLPLE---------MVRIKAGTA---------- 194 Query: 250 PDHYLKNRSEMVSIFSDLP-EALENTVEIARRCSFILQVHAPILPRF-IEKECDDIQKEE 307 Y+K+ +++ + +P E L+ T EIA +C+ + H +P+F +E D + Sbjct: 195 ---YMKDDVQLIDL--KIPQEYLDRTHEIADQCNVDITKHHATMPKFPVEGYSSDAYLMK 249 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + + + + + R Y QRL +E +VI +M ++ YFLIV D IQ+A Sbjct: 250 LLQEKKREIPHFDER--------------YEQRLRYEYDVITQMGYADYFLIVGDLIQYA 295 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+++I VGPGRGS GS+ +Y L IT++DP++++LLFERFLNP+R++MPD DIDF +R Sbjct: 296 KEHDILVGPGRGSSGGSLISYVLGITEVDPVQYNLLFERFLNPERVTMPDIDIDFEDTKR 355 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D+VI+Y +KYG V+ I+TFG L A+A +RD GR LQ +++ ++ LIP + Sbjct: 356 DQVIQYAVDKYGKYNVSGIVTFGHLNARAVMRDTGRILQFSDAELKKISTLIPKRVG--I 413 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +L + D F D + +I+ LEGL R+ STHAAG++I D+ L+ VP+ Sbjct: 414 TLDDMKMDEDFMRFINEDDRRKQWFDIAYALEGLPRNTSTHAAGVIIHDQLLTDYVPI-- 471 Query: 548 DVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 + D + +TQ+ M +E GL+K DFLGL+ L++++ +D + Q ++DL+ +P DD Sbjct: 472 -IEGDSVSLTQWTMTEVESIGLLKIDFLGLRNLSIIRNVMDQVRIQFNQQLDLNTLPLDD 530 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + Y LL T GIFQLES G+R L ++P DI+A+++LYRPGP++ I VY R+ Sbjct: 531 PKVYTLLAQGDTTGIFQLESEGIRNVLRNLKPSHFNDIVAVLALYRPGPMEQIPVYIERR 590 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G + + IH + +LK+T GVIIYQEQ+MQIA +G+S EAD+LRRAM KK + Sbjct: 591 HGAQSVDYIHDDLKAILKDTFGVIIYQEQIMQIANQFAGFSYGEADILRRAMSKKDMSVL 650 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +KE FI G+ G K A I+EL+ KFA+YGF K+HA AYA I+Y ++K HYP Sbjct: 651 LTEKEHFILGSVNKGYDKQTAEAIYELILKFANYGFPKAHAVAYAKIAYYMLYLKVHYPN 710 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F A ++ ++ + K K+ + ++ I I +N ++ + I +L IKG+ Sbjct: 711 IFYTAILSNQIGSEHKTKEIIDEVKKRGIPIYAADINKAHWYYRTYKDGILNALGVIKGL 770 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G + + I++A F + DFC+R+ S+ ++ +LE+L+ AG D FG++R LL SL Sbjct: 771 GYKSVQDIIDARKQGSFKDIYDFCARIPSRIASKPLLEALIHAGCFDSFGHTRATLLASL 830 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKG--TFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 D I ++ RTN+ E F G D I E+ S + E E+ LGFY Sbjct: 831 DMI------IDVERTNEGEESFLESLGLNKKKDYIIHEEMS---DMKKAEYEKAYLGFYL 881 Query: 964 SGHPLD 969 + HP++ Sbjct: 882 TNHPVE 887 >gi|257425817|ref|ZP_05602241.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus 55/2053] gi|257428483|ref|ZP_05604881.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus 65-1322] gi|257431117|ref|ZP_05607494.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus 68-397] gi|257433799|ref|ZP_05610157.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus E1410] gi|257436716|ref|ZP_05612760.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus M876] gi|282914498|ref|ZP_06322284.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus M899] gi|282924844|ref|ZP_06332510.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus C101] gi|293503576|ref|ZP_06667423.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus 58-424] gi|293510591|ref|ZP_06669296.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus M809] gi|293537133|ref|ZP_06671813.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus M1015] gi|257271511|gb|EEV03657.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus 55/2053] gi|257275324|gb|EEV06811.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus 65-1322] gi|257278065|gb|EEV08713.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus 68-397] gi|257281892|gb|EEV12029.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus E1410] gi|257284067|gb|EEV14190.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus M876] gi|282313210|gb|EFB43606.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus C101] gi|282321679|gb|EFB52004.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus M899] gi|290919978|gb|EFD97046.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus M1015] gi|291095242|gb|EFE25507.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus 58-424] gi|291466482|gb|EFF09003.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus M809] Length = 1065 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 286/772 (37%), Positives = 441/772 (57%), Gaps = 40/772 (5%) Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327 PE IA++C+ L+ H +LP++ + D+ K+ + + LE+ Sbjct: 210 PEYFTQADRIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVLVTQLKKLEL------ 262 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387 + Y +RL +E VI M F YFLIV+D I +AK N++ VGPGRGS AGS+ + Sbjct: 263 -----NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVS 317 Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 Y L IT IDP++F+LLFERFLNP+R++MPD DIDF R++VI+YVQ KYG V+ I+ Sbjct: 318 YLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTHREKVIQYVQEKYGELHVSGIV 377 Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507 TFG L A+A RDVGR + ++ + LIP+ ++L F++ + Sbjct: 378 TFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHR 435 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 +R I +KLEGL RH STHAAGI+I D PL + P+ + L TQ+ M E+ G Sbjct: 436 HERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIG 493 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGL+ L+++ + L + + G+ +D+ IPFDD + + LL+ T GIFQLES Sbjct: 494 LLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESD 553 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ +HP ++P+LK T Sbjct: 554 GVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTY 613 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ FI G +NG + I+ Sbjct: 614 GVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGTKQNGYHEDIS 673 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A ++ + + +K + Sbjct: 674 KQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMI 733 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865 ++A++ I I+PP++N +K IY S+ IKGVG + + I+E + F Sbjct: 734 EEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVEERYQNGKFKDF 793 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF R+ + R++LE+L+ GA D FG +R LLQ++D V N ++ Sbjct: 794 FDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQD 846 Query: 926 IFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 F + K + DK L + + E+ LGFY S HP+D K + K + Sbjct: 847 GFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD--KKFVAKQYLT 898 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ S A NN + +Q +T+ G + +VT ++ + + FP Sbjct: 899 IFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 947 Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63 Query: 73 CQL 75 + Sbjct: 64 MTI 66 >gi|315149565|gb|EFT93581.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0012] Length = 1109 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 339/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + GN +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVGNQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|282904273|ref|ZP_06312161.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus C160] gi|282595891|gb|EFC00855.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus C160] Length = 1065 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 286/772 (37%), Positives = 441/772 (57%), Gaps = 40/772 (5%) Query: 268 PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327 PE IA++C+ L+ H +LP++ + D+ K+ + + LE+ Sbjct: 210 PEYFTQADRIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVLVTQLKKLEL------ 262 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387 + Y +RL +E VI M F YFLIV+D I +AK N++ VGPGRGS AGS+ + Sbjct: 263 -----NYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVS 317 Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 Y L IT IDP++F+LLFERFLNP+R++MPD DIDF RR++VI+YVQ KYG V+ I+ Sbjct: 318 YLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQEKYGELHVSGIV 377 Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507 TFG L A+A RDVGR + ++ + LIP+ ++L F++ + Sbjct: 378 TFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHR 435 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 +R I +KLEGL RH STHAAGI+I D PL + P+ + L TQ+ M E+ G Sbjct: 436 HERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIG 493 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGL+ L+++ + L + + G+ +D+ IP DD + + LL+ T GIFQLES Sbjct: 494 LLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPIDDQKVFELLSQGDTTGIFQLESD 553 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 G+R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ +HP ++P+LK T Sbjct: 554 GVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTY 613 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 GVIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ FI G +NG + I+ Sbjct: 614 GVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGTKQNGYHEDIS 673 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A ++ + + +K + Sbjct: 674 KQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMI 733 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865 ++A++ I I+PP++N +K IY S+ IKGVG + + I+E + F Sbjct: 734 EEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVEERYQNGKFKDF 793 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF R+ + R++LE+L+ GA D FG +R LLQ++D V N ++ Sbjct: 794 FDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQD 846 Query: 926 IFAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 F + K + DK L + + E+ LGFY S HP+D K + K + Sbjct: 847 GFLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD--KKFVAKQYLT 898 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ S A NN + +Q +T+ G + +VT ++ + + FP Sbjct: 899 IFKLSNAQ---NNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 947 Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 +L +H++Y LL +L + + + ++ A+AITDTN L+ +F A I+PI G Sbjct: 4 YLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFG 63 Query: 73 CQL 75 + Sbjct: 64 MTI 66 >gi|261208961|ref|ZP_05923366.1| DNA polymerase III alpha subunit [Enterococcus faecium TC 6] gi|289565227|ref|ZP_06445679.1| DNA polymerase III alpha subunit [Enterococcus faecium D344SRF] gi|294615026|ref|ZP_06694915.1| DNA polymerase III subunit alpha [Enterococcus faecium E1636] gi|260077000|gb|EEW64722.1| DNA polymerase III alpha subunit [Enterococcus faecium TC 6] gi|289163048|gb|EFD10896.1| DNA polymerase III alpha subunit [Enterococcus faecium D344SRF] gi|291592157|gb|EFF23777.1| DNA polymerase III subunit alpha [Enterococcus faecium E1636] Length = 1104 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 337/1037 (32%), Positives = 533/1037 (51%), Gaps = 73/1037 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L +SYSLL+ + + + + ++AITD + L+ A EF + G+QPI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L ++ N G ++ GYQ+LI+L SR + + + Sbjct: 63 IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLIKLSSRKMIQE------K 103 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185 + L+ + E ++ S + AF FF Q + +F Y+ Sbjct: 104 LELAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLENVFTRNFYIG 154 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 L + D+ E Q L A + L +E+ A +V+ + + + ++ Sbjct: 155 LIENTP-DQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENL 211 Query: 246 PR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +T + YL + EM+ F + L +A+ +A SF Q H +LP + Sbjct: 212 SASLPLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG 271 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 K+ LR + +E R+ + ++Y++RLD+EL+VI +M F YFLIV Sbjct: 272 ----KQAGEYLRELCYSQVERRITN-------YTKEYQERLDYELSVIHQMGFDDYFLIV 320 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+ Sbjct: 321 WDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDL 380 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K IP Sbjct: 381 DIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIP 440 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N ++ QA + E A L + + LEGL RH STHAAG+VI D+ L Sbjct: 441 NQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLL 499 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 +LVP+ R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ L Sbjct: 500 ELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLK 558 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T L T G+FQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI Sbjct: 559 EIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNID 618 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ K Sbjct: 619 TFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSK 678 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D++K F+SGA + G S+ A ++E + KFA+YGFN+SHA AY+ + +Q A++ Sbjct: 679 KKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYL 738 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYS 838 K H+P F + M N K+K++ +AR+ +++ PS+N F+ V I + Sbjct: 739 KAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFG 798 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIKG+ I+ E + PF S++ F R+D + L +L+SL G D + Sbjct: 799 LTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPN 858 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R QL+ L+ K V + I A ++ +D E+ +E + Sbjct: 859 RKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL------- 909 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIG 1016 G Y SGHP + + ++ + + + I N + L M+ ++ +T+KG + Sbjct: 910 --GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMA 963 Query: 1017 WVTFSEPAKEYEANFFP 1033 +V ++ + E FP Sbjct: 964 FVEGTDSSGEISVTVFP 980 >gi|38234155|ref|NP_939922.1| DNA polymerase III subunit alpha [Corynebacterium diphtheriae NCTC 13129] gi|38200417|emb|CAE50105.1| DNA polymerase III alpha subunit [Corynebacterium diphtheriae] Length = 1186 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 335/1017 (32%), Positives = 529/1017 (52%), Gaps = 61/1017 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ YS+L+G ++ + +++ PA+ +TD N+F + F + A Sbjct: 1 MAKKSSFVHLHNHTEYSMLDGMAKVDMLAEEVVRQGMPAVGMTDHGNMFGSDAFYRAMKA 60 Query: 65 AGIQPIIGCQLDIDMQDNL-KMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIE 114 AG++PIIG + + L K + P + +L EG L Sbjct: 61 AGVKPIIGIEAYMAPGSRLHKERVRWGEPHQKSDDVSASGAYLHQTMLAENVEGLHNLFY 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E T G+I TG SG + A + + Sbjct: 121 LSSMASYEGQLGKWPRMDAELIAEHAT-GIIATTGCPSGDVQTRLRLGQFDQALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + ++G + ++ L H +R R S+++++ +LP + TN+ ++ E AH+ + Sbjct: 180 QDIYGKENYFLELMDHGLEIENRVR-SELLEIGRKLDLPPLVTNDCHYVLESQAPAHEAM 238 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHA 289 + V +S DR + +Y+K +M + L P+A +NT+ IA R ++ Sbjct: 239 LCVQTGKTLSDPDRFKFDGSGYYIKTAEQMRETWDSLVPQACDNTLWIAERVQDYGEIWE 298 Query: 290 PILPRFIEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 P P D + LR++ GL +R GA+ Q+Y +R +FE++VI Sbjct: 299 P-HPHDRMPIADVPEGHTPTSWLRHEVHEGLRMRFNGGAVP-----QNYLERAEFEIDVI 352 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLFERFL Sbjct: 353 DMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFL 412 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466 NP+R S PD DIDF RR E+IRY ++G +++AQ+ITFG+++ K AL+D R Q Sbjct: 413 NPERPSAPDIDIDFDDRRRGEMIRYAAQRWGEDKIAQVITFGTVKTKQALKDSARVQYGQ 472 Query: 467 MPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRLLE 513 Y DR+ K +P DP HP +A R DP V ++ + Sbjct: 473 EGYKMADRITKELPPAIMAKDIPLSGIMDPEHPRYGEA----GEVRHLIETDPDVRKIYD 528 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 ++ LEG+ R A HA +++ PL + +PM++ +T + E GL+K DF Sbjct: 529 TARGLEGVVRQAGVHACAVIMASVPLLEHIPMWKRANDGALITGWPYPACEAIGLLKMDF 588 Query: 574 LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ LT++ L+ + R ++DL + DD Y LL++ TLG+FQL+S GM++ L Sbjct: 589 LGLRNLTVIGDCLENIKINRNEELDLEALQTDDPNVYKLLSSGDTLGVFQLDSGGMQELL 648 Query: 633 EGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQ 686 + MQP DI+A ++LYRPGP ++ Y +RKNG++ I IHP L +P+ L+ET Sbjct: 649 KRMQPTGFNDIVASLALYRPGPMGVNAHWDYADRKNGRKPIEPIHPELEEPLKEILEETY 708 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQ+M+I++ L+ Y+ EAD R+AMGKK E + K+ ++F G NG SK Sbjct: 709 GLIVYQEQIMEISRKLANYTAGEADGFRKAMGKKKPEVLAKEYKKFSEGMFSNGYSKAAV 768 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 ++ + FA Y FNKSHAA Y ++SY TA++K +Y E++AA +T D +K + Sbjct: 769 DALWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKSAIYL 828 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSL 865 + R +I ++ P VN ++F I + L A++ VG I++A +K F Sbjct: 829 SNCRHLDISVLSPDVNESHLNFMPVGEDIRFGLGAVRNVGEDVVAAIIKAREEKGAFTDF 888 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 D+ ++D N+RV ESL+ AGA D + R LL ++ +K + Sbjct: 889 SDYLDKIDITACNKRVTESLIKAGAFDSMDHPRKGLLLIHEDAVDAVTSTKKAADKGQFD 948 Query: 926 IFAHEKGTFSDKITLEK-FSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPIL 975 +FA G +D + F+V+ +++ E+ +LG Y SGHPLD Y+ L Sbjct: 949 LFA---GLGADAEEVNNVFAVQIPDAQWDKKHQLALEREMLGLYVSGHPLDGYEEAL 1002 >gi|69247357|ref|ZP_00604321.1| DNA polymerase III alpha subunit [Enterococcus faecium DO] gi|257891358|ref|ZP_05671011.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410] gi|260560443|ref|ZP_05832617.1| DNA polymerase III alpha subunit [Enterococcus faecium C68] gi|314937961|ref|ZP_07845274.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a04] gi|314940993|ref|ZP_07847895.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133C] gi|314947550|ref|ZP_07850962.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0082] gi|314953129|ref|ZP_07856084.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133A] gi|314993023|ref|ZP_07858417.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133B] gi|314995294|ref|ZP_07860404.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a01] gi|68194880|gb|EAN09352.1| DNA polymerase III alpha subunit [Enterococcus faecium DO] gi|257827718|gb|EEV54344.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410] gi|260073445|gb|EEW61773.1| DNA polymerase III alpha subunit [Enterococcus faecium C68] gi|313590479|gb|EFR69324.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a01] gi|313592474|gb|EFR71319.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133B] gi|313594797|gb|EFR73642.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133A] gi|313600185|gb|EFR79028.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133C] gi|313642684|gb|EFS07264.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a04] gi|313645993|gb|EFS10573.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0082] Length = 1104 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 336/1037 (32%), Positives = 533/1037 (51%), Gaps = 73/1037 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L +SYSLL+ + + + + ++AITD + L+ A EF + G+QPI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L ++ N G ++ GYQ+L++L SR + + + Sbjct: 63 IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLMKLSSRKMIQE------K 103 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185 + L+ + E ++ S + AF FF Q + +F Y+ Sbjct: 104 LELAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLENVFTRNFYIG 154 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 L + D+ E Q L A + L +E+ A +V+ + + + ++ Sbjct: 155 LTENTP-DQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKEGSQIPLENL 211 Query: 246 PR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +T + YL + EM+ F + L +A+ +A SF Q H +LP + Sbjct: 212 SASLPLTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG 271 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 K+ LR + +E R+ + ++Y++RLD+EL+VI +M F YFLIV Sbjct: 272 ----KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIV 320 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+ Sbjct: 321 WDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDL 380 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K IP Sbjct: 381 DIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIP 440 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N ++ QA + E A L + + LEGL RH STHAAG+VI D+ L Sbjct: 441 NQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLL 499 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 +LVP+ R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ L Sbjct: 500 ELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLK 558 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T L T G+FQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI Sbjct: 559 EIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNID 618 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ K Sbjct: 619 TFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSK 678 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D++K F+SGA + G S+ A ++E + KFA+YGFN+SHA AY+ + +Q A++ Sbjct: 679 KKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYL 738 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYS 838 K H+P F + M N K+K++ +AR+ +++ PS+N F+ V I + Sbjct: 739 KAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFG 798 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIKG+ I+ E + PF S++ F R+D + L +L+SL G D + Sbjct: 799 LTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPN 858 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R QL+ L+ K V + I A ++ +D E+ +E + Sbjct: 859 RKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL------- 909 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIG 1016 G Y SGHP + + ++ + + + I N + L M+ ++ +T+KG + Sbjct: 910 --GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMA 963 Query: 1017 WVTFSEPAKEYEANFFP 1033 +V ++ + E FP Sbjct: 964 FVEGTDSSGEISVTVFP 980 >gi|297580888|ref|ZP_06942813.1| DNA polymerase III [Vibrio cholerae RC385] gi|297534714|gb|EFH73550.1| DNA polymerase III [Vibrio cholerae RC385] Length = 649 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 275/664 (41%), Positives = 400/664 (60%), Gaps = 31/664 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + LL GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R Sbjct: 114 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172 Query: 189 HRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 D ES + + +A ++LP+VATN +F++EE +EAH++ +A+ + R Sbjct: 173 TGRADE--ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ LP F Sbjct: 231 PKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----G 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 286 MAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P Sbjct: 406 FCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 466 DPGMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----V 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V Sbjct: 525 FAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ Sbjct: 585 RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQ 644 Query: 657 NIVV 660 + +V Sbjct: 645 SGMV 648 >gi|257880259|ref|ZP_05659912.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,230,933] gi|257883058|ref|ZP_05662711.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,502] gi|294623223|ref|ZP_06702097.1| DNA polymerase III subunit alpha [Enterococcus faecium U0317] gi|257814487|gb|EEV43245.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,230,933] gi|257818716|gb|EEV46044.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,502] gi|291597365|gb|EFF28542.1| DNA polymerase III subunit alpha [Enterococcus faecium U0317] Length = 1104 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 336/1037 (32%), Positives = 533/1037 (51%), Gaps = 73/1037 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L +SYSLL+ + + + + ++AITD + L+ A EF + G+QPI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L ++ N G ++ GYQ+L++L SR + + + Sbjct: 63 IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLMKLSSRKMIQE------K 103 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185 + L+ + E ++ S + AF FF Q + +F Y+ Sbjct: 104 LELAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLENVFTRNFYIG 154 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 L + D+ E Q L A + L +E+ A +V+ + + + ++ Sbjct: 155 LTENTP-DQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKEGSQIPLENL 211 Query: 246 PR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +T + YL + EM+ F + L +A+ +A SF Q H +LP + Sbjct: 212 SASLPLTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG 271 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 K+ LR + +E R+ + ++Y++RLD+EL+VI +M F YFLIV Sbjct: 272 ----KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIV 320 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+ Sbjct: 321 WDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDL 380 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K IP Sbjct: 381 DIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIP 440 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N ++ QA + E A L + + LEGL RH STHAAG+VI D+ L Sbjct: 441 NQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLL 499 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 +LVP+ R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ L Sbjct: 500 ELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLK 558 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T L T G+FQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI Sbjct: 559 EIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNID 618 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ K Sbjct: 619 TFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSK 678 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D++K F+SGA + G S+ A ++E + KFA+YGFN+SHA AY+ + +Q A++ Sbjct: 679 KKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYL 738 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYS 838 K H+P F + M N K+K++ +AR+ +++ PS+N F+ V I + Sbjct: 739 KAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFG 798 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIKG+ I+ E + PF S++ F R+D + L +L+SL G D + Sbjct: 799 LTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPN 858 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R QL+ L+ K V + I A ++ +D E+ +E + Sbjct: 859 RKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL------- 909 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIG 1016 G Y SGHP + + ++ + + + I N + L M+ ++ +T+KG + Sbjct: 910 --GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMA 963 Query: 1017 WVTFSEPAKEYEANFFP 1033 +V ++ + E FP Sbjct: 964 FVEGTDSSGEISVTVFP 980 >gi|294619116|ref|ZP_06698611.1| DNA polymerase III subunit alpha [Enterococcus faecium E1679] gi|291594777|gb|EFF26159.1| DNA polymerase III subunit alpha [Enterococcus faecium E1679] Length = 1104 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 337/1037 (32%), Positives = 532/1037 (51%), Gaps = 73/1037 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L +SYSLL+ + + + + ++AITD + L+ A EF + G+QPI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L ++ N G ++ GYQ+LI+L SR + + + Sbjct: 63 IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLIKLSSRKMIQE------K 103 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185 + L+ + E ++ S + AF FF Q + +F Y+ Sbjct: 104 LELAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLENVFTRNFYIG 154 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 L + D+ E Q L A + L +E+ A +V+ + + + ++ Sbjct: 155 LIENTP-DQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENL 211 Query: 246 PR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +T + YL + EM+ F + L +A+ +A SF Q H +LP + Sbjct: 212 SASLPLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG 271 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 K+ LR + +E R+ + ++Y++RLD+EL+VI +M F YFLIV Sbjct: 272 ----KQAGEYLRELCYSQVERRITN-------YTKEYQERLDYELSVIHQMGFDDYFLIV 320 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+ Sbjct: 321 WDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDL 380 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K IP Sbjct: 381 DIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIP 440 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + QA + E A L + + LEGL RH STHAAG+VI D+ L Sbjct: 441 NQLKITLP-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLL 499 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 +LVP+ R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ L Sbjct: 500 ELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLK 558 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T L T G+FQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI Sbjct: 559 EIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNID 618 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ K Sbjct: 619 TFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSK 678 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D++K F+SGA + G S+ A ++E + KFA+YGFN+SHA AY+ + +Q A++ Sbjct: 679 KKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYL 738 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYS 838 K H+P F + M N K+K++ +AR+ +++ PS+N F+ V I + Sbjct: 739 KAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFG 798 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIKG+ I+ E + PF S++ F R+D + L +L+SL G D + Sbjct: 799 LTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPN 858 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R QL+ L+ K V + I A ++ +D E+ +E + Sbjct: 859 RKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL------- 909 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIG 1016 G Y SGHP + + ++ + + + I N + L M+ ++ +T+KG + Sbjct: 910 --GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMA 963 Query: 1017 WVTFSEPAKEYEANFFP 1033 +V ++ + E FP Sbjct: 964 FVEGTDSSGEISVTVFP 980 >gi|253315124|ref|ZP_04838337.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 967 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 288/772 (37%), Positives = 439/772 (56%), Gaps = 42/772 (5%) Query: 269 EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328 E L IA++C+ L+ H +LP++ + D+ K+ + + LE+ Sbjct: 113 EYLTQVDVIAQKCNAELKYHQSLLPQY-QTPNDESAKKYLWRVLVTQLKKLEL------- 164 Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388 Y Y +RL +E VI M F YFLIV+D I +AK N++ VGPGRGS AGS+ +Y Sbjct: 165 --NYDV--YLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSY 220 Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448 L IT IDP++F+LLFERFLNP+R++MPD DIDF RR+ VI+YVQ KYG V+ I+T Sbjct: 221 LLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVT 280 Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508 FG L A+A RDVGR + ++ + LIP+ ++L F++ + Sbjct: 281 FGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLG--ITLDEAYQIDDFKKFVHRNHRH 338 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 +R I +KLEGL RH STHAAGI+I D PL + P+ + L TQ+ M E+ GL Sbjct: 339 ERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLL--TQWTMTEAERIGL 396 Query: 569 IKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 +K DFLGL+ L+++ + L + + G+ +D+ IPFDD + + LL+ T GIFQLES G Sbjct: 397 LKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDG 456 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 +R L+ ++P+ EDI+A+ SLYRPGP++ I Y R++ K+ +HP ++P+LK T G Sbjct: 457 VRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTYG 516 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 VIIYQEQ+MQIA + +S EAD+LRRAM KK + ++ +++ FI GA +NG + I+ Sbjct: 517 VIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISK 576 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 IF+L+ KFADYGF ++HA +Y+ I+Y +++K HYP F A ++ + + +K + + Sbjct: 577 QIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIE 636 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866 +A++ I I+PP++N +K IY S+ IKGVG + + I+ E + F Sbjct: 637 EAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFF 696 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF R+ + R++LE+L+ GA D FG +R LLQ++D V N ++ Sbjct: 697 DFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQ-------VLDGDLNIEQDG 749 Query: 927 FAHE----KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 F + K + DK L + + E+ LGFY S HP+D +K K Sbjct: 750 FLFDILTPKQMYEDKEELPDALIS------QYEKEYLGFYVSQHPVD------KKFVAKQ 797 Query: 983 YEESVATIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 Y N + + K +Q +T+ G + +VT ++ + + FP Sbjct: 798 YLTIFKLSNAQNYKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFP 849 >gi|293569257|ref|ZP_06680555.1| DNA polymerase III subunit alpha [Enterococcus faecium E1071] gi|291587963|gb|EFF19813.1| DNA polymerase III subunit alpha [Enterococcus faecium E1071] Length = 1104 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 336/1037 (32%), Positives = 531/1037 (51%), Gaps = 73/1037 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L +SYSLL+ + + + + ++AITD + L+ A EF + G+QPI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L ++ N G ++ GYQ+L++L SR + + + Sbjct: 63 IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLMKLSSRKMIQE------K 103 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185 + L+ + E ++ S + AF FF Q +F Y+ Sbjct: 104 LELAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLGNVFTRNFYIG 154 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 L + D+ E Q L A + L +E+ A +V+ + + + ++ Sbjct: 155 LTENTP-DQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKEGSQIPLENL 211 Query: 246 PR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +T + YL + EM+ F + L +A+ +A SF Q H +LP + Sbjct: 212 SASLPLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG 271 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 K+ LR + +E R+ + ++Y++RLD+EL+VI +M F YFLIV Sbjct: 272 ----KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIV 320 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP R +MPD D+ Sbjct: 321 WDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPKRFTMPDIDL 380 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K IP Sbjct: 381 DIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIP 440 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N ++ QA + E A L + + LEGL RH STHAAG+VI D+ L Sbjct: 441 NQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLL 499 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 +LVP+ R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ L Sbjct: 500 ELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLK 558 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +T L T G+FQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI Sbjct: 559 EIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNID 618 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ K Sbjct: 619 TFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSK 678 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D++K F+SGA + G S+ A ++E + KFA+YGFN+SHA AY+ + +Q A++ Sbjct: 679 KKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYL 738 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYS 838 K H+P F + M N K+K++ +AR+ +++ PS+N F+ V I + Sbjct: 739 KAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFG 798 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIKG+ I+ E + PF S++ F R+D + L +L+SL G D + Sbjct: 799 LTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPN 858 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R QL+ L+ K V + I A ++ +D E+ +E + Sbjct: 859 RKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL------- 909 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIG 1016 G Y SGHP + + ++ + + + I N + L M+ ++ +T+KG + Sbjct: 910 --GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMA 963 Query: 1017 WVTFSEPAKEYEANFFP 1033 +V ++ + E FP Sbjct: 964 FVEGTDSSGEISVTVFP 980 >gi|227517968|ref|ZP_03948017.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0104] gi|227074586|gb|EEI12549.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0104] Length = 1109 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 337/1037 (32%), Positives = 540/1037 (52%), Gaps = 66/1037 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAIKRVYNQTIHLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 + LG Y SGHP + +K + E V + +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFKKTRLAKQTQLVHELV---ENQSTKLLIYVKNIRTIRTKKGEQMA 968 Query: 1017 WVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 969 FVDGDDTTGSISLTLFP 985 >gi|300860057|ref|ZP_07106145.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TUSoD Ef11] gi|300850875|gb|EFK78624.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TUSoD Ef11] gi|315144680|gb|EFT88696.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2141] gi|315160663|gb|EFU04680.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0645] Length = 1109 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 339/1038 (32%), Positives = 542/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G K A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|257415661|ref|ZP_05592655.1| DNA polymerase III alpha subunit [Enterococcus faecalis AR01/DG] gi|257157489|gb|EEU87449.1| DNA polymerase III alpha subunit [Enterococcus faecalis ARO1/DG] gi|315147993|gb|EFT92009.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4244] Length = 1109 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 339/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G K A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|257885304|ref|ZP_05664957.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,501] gi|257821156|gb|EEV48290.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,501] Length = 1104 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 335/1037 (32%), Positives = 533/1037 (51%), Gaps = 73/1037 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L +SYSLL+ + + + + ++AITD + L+ A EF + G+QPI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L ++ N G ++ GYQ+L++L SR + + + Sbjct: 63 IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLMKLSSRKMIQE------K 103 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185 + L+ + E ++ S + AF FF Q + +F Y+ Sbjct: 104 LDLAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLENVFTRNFYIG 154 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 L + D+ E Q L A + L +E+ A +V+ + + + ++ Sbjct: 155 LTENTP-DQLPEW--YQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENL 211 Query: 246 PR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +T + YL + EM+ F + L +A+ +A SF Q H +LP + Sbjct: 212 SASLPLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG 271 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 K+ LR + +E R+ + ++Y++RLD+EL+VI +M F YFLIV Sbjct: 272 ----KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIV 320 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+ Sbjct: 321 WDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDL 380 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K IP Sbjct: 381 DIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIP 440 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N ++ QA + E A L + + LEGL RH STHAAG+VI D+ L Sbjct: 441 NQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLL 499 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 +LVP+ R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ L Sbjct: 500 ELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLK 558 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P +D +T L T G+FQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI Sbjct: 559 EMPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNID 618 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ K Sbjct: 619 TFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSK 678 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D++K F+SGA + G S+ A ++E + KFA+YGFN+SHA AY+ + +Q A++ Sbjct: 679 KKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYL 738 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYS 838 K H+P F + M N K+K++ +AR+ +++ PS+N F+ V I + Sbjct: 739 KAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFG 798 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIKG+ I+ E + PF S++ F R+D + L +L+SL G D + Sbjct: 799 LTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPN 858 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R QL+ L+ K V + I A ++ +D E+ +E + Sbjct: 859 RKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL------- 909 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIG 1016 G Y SGHP + + ++ + + + I N + L M+ ++ +T+KG + Sbjct: 910 --GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMA 963 Query: 1017 WVTFSEPAKEYEANFFP 1033 +V ++ + E FP Sbjct: 964 FVEGTDSSGEISVTVFP 980 >gi|46200108|ref|YP_005775.1| DNA polymerase III alpha subunit [Thermus thermophilus HB27] gi|46197736|gb|AAS82148.1| DNA polymerase III alpha subunit [Thermus thermophilus HB27] Length = 2067 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 308/769 (40%), Positives = 441/769 (57%), Gaps = 64/769 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL H+ +SLL+GA L+++L K + PA+A+TD NLF A+EF +KA GI+ Sbjct: 7 FAHLHQHTQFSLLDGAAKLSDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATEMGIK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G + + + +GK + LL GYQ L+ L SR YL + + Sbjct: 67 PILGYEAYVAAESRFD-RKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYL-EGFYEK 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L+E EGLI L+G I + + +AE RL + +F DR ++ +Q Sbjct: 125 PRIDREILRE-HAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFKDRFFIEIQN 183 Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + ++V+ + A + L +VATN+ ++ +ED AH+VL+A+ + + R R Sbjct: 184 HGLPEQKKVNEVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKSTLDDPGRWR 243 Query: 248 VTPDH-YLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPI---LPRF----- 295 D Y+K EM ++F + E +NTVEIAR C+ L + + +PRF Sbjct: 244 FPCDEFYVKTPEEMRAMFPEEEWGDEPFDNTVEIARMCNVELPIGDKMVYRIPRFPLPEG 303 Query: 296 ---------------IEKECDDIQK---------------EEENELRNKAVAGLEV---- 321 + + D I + + E +A+A +E Sbjct: 304 RTEAQYLMELTFKGLLRRYPDRITEGFYREVFRLLGKLPPHGDGEALAEALAQVEREAWE 363 Query: 322 RLAQG----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 RL + A K + A+ R +EL+VI RM F GYFLIV D+I WA++N + VGPG Sbjct: 364 RLMKSLPPLAGVKEWTAEAIFHRALYELSVIERMGFPGYFLIVQDYINWARRNGVSVGPG 423 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF RD VI+YV+ + Sbjct: 424 RGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRER 483 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDS 496 YG ++VAQI T GSL +KAAL+DV R +P+ + + L KLIP P LQ AI Sbjct: 484 YGEDKVAQIGTLGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAIQVVP 543 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 R DP V +LE++ +LEGL RHAS HAAG+VI PL+ LVP+ RD + PVT Sbjct: 544 ELRAEMEKDPKVREVLEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGRPVT 602 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTK 615 Q++M +E GL+K DFLGL+TLT L + + A +GV++D +P DD +T+ LL+ Sbjct: 603 QYDMGAVEALGLLKMDFLGLRTLTFLDEVKRIVKASQGVELDYDALPLDDPKTFALLSRG 662 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI-VSI 674 T G+FQLES GM L G++P ED+IA++SLYRPGP+++I Y R +G E + S Sbjct: 663 ETKGVFQLESGGMTATLRGLKPRRFEDLIAILSLYRPGPMEHIPTYIRRHHGLEPVSYSE 722 Query: 675 HP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 P + P+L ET G+ +YQEQ+MQIA ++GYSL EAD+LRR + + Sbjct: 723 FPHAEKYLKPILDETYGIPVYQEQIMQIASAVAGYSLGEADLLRRCLAE 771 Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 103/278 (37%), Positives = 150/278 (53%), Gaps = 16/278 (5%) Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 + SHAAAY+++SYQTA++K HYPVEF+AA +++E + +K+ ++ +DAR I+++PP V Sbjct: 1660 HNSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARAMGIEVLPPDV 1719 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRR 880 N DF V +I + L+A+K VG A I+ E P+ SL DF R+D K LN+R Sbjct: 1720 NRSGFDFLVQGRQILFGLSAVKNVGEAAAEAILRERERGGPYRSLGDFLKRLDEKVLNKR 1779 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKI 938 LE L+ AGALD FG R +LL SL+ + K W +NR + G FS ++ Sbjct: 1780 TLEFLIKAGALDGFG-ERARLLASLEGLLK---WAAENREKARSGMM----GLFSEVEEP 1831 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NN 994 L + + + R E+ LG Y SGHP+ Y P LR+ EE R + Sbjct: 1832 PLAEAAPLDEITRLRYEKEALGIYVSGHPILRY-PGLRETATCTLEELPHLARDLPPRSR 1890 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + LA MV +K T+ G + S+ EA F Sbjct: 1891 VLLAGMVEEVVRKPTKSGGMMARFVLSDETGALEAVAF 1928 Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 43/71 (60%) Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 +SE V+ +MGKK EEM +ERF+ GA + G+ + A +F++L FA+YGFNK Sbjct: 1182 VSEDLVVHNSMGKKKVEEMKSHRERFVQGAKERGVPEEEANRLFDMLEAFANYGFNKCLP 1241 Query: 767 AAYAVISYQTA 777 A V+ + T Sbjct: 1242 ARARVVDWCTG 1252 >gi|55980149|ref|YP_143446.1| DNA polymerase III subunit alpha [Thermus thermophilus HB8] gi|55771562|dbj|BAD70003.1| DNA polymerase III alpha subunit [Thermus thermophilus HB8] Length = 2067 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 308/769 (40%), Positives = 441/769 (57%), Gaps = 64/769 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL H+ +SLL+GA L+++L K + PA+A+TD NLF A+EF +KA GI+ Sbjct: 7 FAHLHQHTQFSLLDGAAKLSDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATEMGIK 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G + + + +GK + LL GYQ L+ L SR YL + + Sbjct: 67 PILGYEAYVAAESRFD-RKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYL-EGFYEK 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L+E EGLI L+G I + + +AE RL + +F DR ++ +Q Sbjct: 125 PRIDREILRE-HAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFKDRFFIEIQN 183 Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + ++V+ + A + L +VATN+ ++ +ED AH+VL+A+ + + R R Sbjct: 184 HGLPEQKKVNEVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKSTLDDPGRWR 243 Query: 248 VTPDH-YLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPI---LPRF----- 295 D Y+K EM ++F + E +NTVEIAR C+ L + + +PRF Sbjct: 244 FPCDEFYVKTPEEMRAMFPEEEWGDEPFDNTVEIARMCNVELPIGDKMVYRIPRFPLPEG 303 Query: 296 ---------------IEKECDDIQK---------------EEENELRNKAVAGLEV---- 321 + + D I + + E +A+A +E Sbjct: 304 RTEAQYLMELTFKGLLRRYPDRITEGFYREVFRLLGKLPPHGDGEALAEALAQVEREAWE 363 Query: 322 RLAQG----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 RL + A K + A+ R +EL+VI RM F GYFLIV D+I WA++N + VGPG Sbjct: 364 RLMKSLPPLAGVKEWTAEAIFHRALYELSVIERMGFPGYFLIVQDYINWARRNGVSVGPG 423 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF RD VI+YV+ + Sbjct: 424 RGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRER 483 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ-AIADDS 496 YG ++VAQI T GSL +KAAL+DV R +P+ + + L KLIP P LQ AI Sbjct: 484 YGEDKVAQIGTLGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAIQVVP 543 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 R DP V +LE++ +LEGL RHAS HAAG+VI PL+ LVP+ RD + PVT Sbjct: 544 ELRAEMEKDPKVREVLEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGRPVT 602 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTK 615 Q++M +E GL+K DFLGL+TLT L + + A +GV++D +P DD +T+ LL+ Sbjct: 603 QYDMGAVEALGLLKMDFLGLRTLTFLDEVKRIVKASQGVELDYDALPLDDPKTFALLSRG 662 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI-VSI 674 T G+FQLES GM L G++P ED+IA++SLYRPGP+++I Y R +G E + S Sbjct: 663 ETKGVFQLESGGMTATLRGLKPRRFEDLIAILSLYRPGPMEHIPTYIRRHHGLEPVSYSE 722 Query: 675 HP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 P + P+L ET G+ +YQEQ+MQIA ++GYSL EAD+LRR + + Sbjct: 723 FPHAEKYLKPILDETYGIPVYQEQIMQIASAVAGYSLGEADLLRRCLAE 771 Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 151/278 (54%), Gaps = 16/278 (5%) Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 + SHAAAY+++SYQTA++K HYPVEF+AA +++E + +K+ ++ +DAR I+++PP V Sbjct: 1660 HNSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARAMGIEVLPPDV 1719 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRR 880 N DF V +I + L+A+K VG A I+ E P+ SL DF R+D K LN+R Sbjct: 1720 NRSGFDFLVQGRQILFGLSAVKNVGEAAAEAILRERERGGPYRSLGDFLKRLDEKVLNKR 1779 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKI 938 LESL+ AGALD FG R +LL SL+ + K W +NR + G FS ++ Sbjct: 1780 TLESLIKAGALDGFG-ERARLLASLEGLLK---WAAENREKARSGMM----GLFSEVEEP 1831 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NN 994 L + + + R E+ LG Y SGHP+ Y P LR+ EE R + Sbjct: 1832 PLAEAAPLDEITRLRYEKEALGIYVSGHPILRY-PGLRETATCTLEELPHLARDLPPRSR 1890 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + LA MV +K T+ G + S+ EA F Sbjct: 1891 VLLAGMVEEVVRKPTKSGGMMARFVLSDETGALEAVAF 1928 Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 43/71 (60%) Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 +SE V+ +MGKK EEM +ERF+ GA + G+ + A +F++L FA+YGFNK Sbjct: 1182 VSEDLVVHNSMGKKKVEEMKSHRERFVQGAKERGVPEEEANRLFDMLEAFANYGFNKCLP 1241 Query: 767 AAYAVISYQTA 777 A V+ + T Sbjct: 1242 ARARVVDWCTG 1252 >gi|293556333|ref|ZP_06674915.1| DNA polymerase III subunit alpha [Enterococcus faecium E1039] gi|291601501|gb|EFF31771.1| DNA polymerase III subunit alpha [Enterococcus faecium E1039] Length = 1104 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 336/1039 (32%), Positives = 537/1039 (51%), Gaps = 77/1039 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L +SYSLL+ + + + + ++AITD + L+ A EF + G+QPI Sbjct: 3 FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L ++ N G ++ GYQ+L++L SR + + + Sbjct: 63 IGLHLSYTYEEK----NYG---------LLAYAKDEIGYQQLMKLSSRKMIQE------K 103 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFGDRLYVN 185 + L+ + E ++ S + AF FF Q + +F Y+ Sbjct: 104 LELAEMTETDHLAFVVPANHS---VSEAFNKEDNFFGHWQ------FLLENVFTRNFYIG 154 Query: 186 LQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L + D+ E V++ Y+ L A + L +E+ A +V+ + + + + Sbjct: 155 LTENTP-DQLPEWYHYVIKENYS----LCALHPIASLQQEELFALEVMKHIKDGSQIPLE 209 Query: 244 DRPR---VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + +T + YL + EM+ F + L +A+ +A SF Q H +LP + Sbjct: 210 NLSASLPLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVP 269 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 K+ LR + +E R+ + ++Y++RLD+EL+VI +M F YFL Sbjct: 270 NG----KQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFL 318 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV D + +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD Sbjct: 319 IVWDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDI 378 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+D +RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K Sbjct: 379 DLDIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKA 438 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IPN ++ QA + E A L + + LEGL RH STHAAG+VI D+ Sbjct: 439 IPNQLKITLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKN 497 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 L +LVP+ R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ Sbjct: 498 LLELVPLQRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIR 556 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L IP +D +T L T G+FQ ES+G+R L + P+ IED+ A+ +LYRPGP+ N Sbjct: 557 LKEIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDVAAVNALYRPGPMQN 616 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I + RK GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ Sbjct: 617 IDTFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAV 676 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK K+ +D++K F+SGA + G S+ A ++E + KFA+YGFN+SHA AY+ + +Q A Sbjct: 677 SKKKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMA 736 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIY 836 ++K H+P F + M N K+K++ +AR+ +++ PS+N F+ V I Sbjct: 737 YLKAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKKEIR 796 Query: 837 YSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L AIKG+ I+ E + PF S++ F R+D + L +L+SL G D Sbjct: 797 FGLTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELS 856 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R QL+ L+ K V + I A ++ +D E+ +E + Sbjct: 857 PNRKQLMLDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL----- 909 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSR 1014 G Y SGHP + + ++ + + + I N + L M+ ++ +T+KG Sbjct: 910 ----GIYLSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGEL 961 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + +V ++ + E FP Sbjct: 962 MAFVEGTDSSGEISVTVFP 980 >gi|319440285|ref|ZP_07989441.1| DNA polymerase III subunit alpha [Corynebacterium variabile DSM 44702] Length = 1188 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 330/1021 (32%), Positives = 520/1021 (50%), Gaps = 69/1021 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K SFVHL H+ YS+L+G ++ + +++ PA+ +TD N+F + F AA Sbjct: 2 KKSSFVHLHNHTEYSMLDGMAKVDLLAQEVSRQGMPAVGMTDHGNMFGSDAFYHAMTAAD 61 Query: 67 IQPIIGCQLDID-----MQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIEL 115 I+PIIG + + ++D +K Q + V ++ A G L L Sbjct: 62 IKPIIGIETYMAPDSRLIKDRIKW-GQPEQKRDDVAGGGYYLHQTMMAENATGLHNLFRL 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S Q + R+ + E EG+I TG SG + A + ++ Sbjct: 121 SSLASYEGQVSKYPRMDAEIVAE-HAEGIIATTGCPSGDVQTRLRLGQFDKALEAAAMWQ 179 Query: 176 KLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++G D ++ L H G D R R+ ++++ ELP + TN+ ++ ++ + H+V+ Sbjct: 180 DIYGKDNYFLELMDH-GLDIEKRVRDD-LLEIGKRLELPPLVTNDCHYVLQKQAKPHEVM 237 Query: 232 MAVAHSTVVSQK------DRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRC-- 281 + V + + R + D Y +EM+ + D +P+ +NT+ IA R Sbjct: 238 LCVQTGATLEEPTLDEGGKRFAFSGDGYYIKPAEMLREYWDPIVPDGCDNTLWIAERVQD 297 Query: 282 -SFILQVHA-PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 + + H +P++ E +E+ + GL R G + Q+Y Sbjct: 298 YGELWEEHTHDRMPKYDVPEGHTPTSWLTSEVHD----GLIERFNGGEVP-----QEYLD 348 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 R +E++VI + YFL+VAD I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ Sbjct: 349 RAKYEIDVIDMKGYPSYFLVVADLIKHARSIGISVGPGRGSAAGALVAYALTITNIDPIE 408 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 L+FERFLNP+R S PD DIDF DRR E+IRY +G ++VAQ+ITFG+++ K A++ Sbjct: 409 HGLMFERFLNPERPSAPDIDIDFADDRRSEMIRYAAENWGEDKVAQVITFGTVKTKQAIK 468 Query: 460 DVGRAL--QMPYSQVDRLCK-LIPNDPAHPVSLQAIADDSRFREARLA--------DPSV 508 D RA Q + DR+ K L P A + L I D R A DP V Sbjct: 469 DASRAHHGQPGFQIADRITKALPPAQAAKDIPLSGIMDPEHPRYGEAAEIRTLIETDPVV 528 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 + + + LEG+ R A HA +++ PL +PM++ +T + E GL Sbjct: 529 KEIYDDALGLEGVVRQAGVHACAVIMASVPLMDHIPMWKRPADGAYITGWPYPACEAIGL 588 Query: 569 IKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 +K DFLGL+ LT++ + + + RG DL + DD +Y LL TLGIFQL+S G Sbjct: 589 LKMDFLGLRNLTVIADCIKNIKRNRGEDFDLENLETDDPASYELLARGDTLGIFQLDSGG 648 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP----LIDPM 681 M++ L+ M+P DI+A ++LYRPGP + Y +RKNG++ I IHP I + Sbjct: 649 MQELLKRMKPTGFNDIVASLALYRPGPMGVGAHWDYADRKNGRKPIEPIHPELAESIKDI 708 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L+ET G+I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + K+ +F +G NG Sbjct: 709 LEETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAKEFGKFSAGMKSNGY 768 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S +++ + FA Y FNKSHAA Y ++S+ TA++K HY E++AA +T D +K Sbjct: 769 SDEAIKALWDTVLPFAGYAFNKSHAAGYGLVSFWTAYLKEHYTAEYMAALLTSVADKKDK 828 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860 + D R ++++ P VN F+ I + L A++ VG I++A +K Sbjct: 829 SAIYLADCRHLGVKVLSPDVNESAYTFQSVGEDIRFGLGAVRNVGEDVVDSIVKAREEKG 888 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 F D+ ++D+ N+RV +SL+ AGA D G+ R L ++ +K Sbjct: 889 KFTDFSDYLDKIDATACNKRVTDSLIKAGAFDSLGHPRKGLNLIHEDAVDAVTSTKKAAA 948 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPI 974 ++FA S++ T + F VE ++ E+ +LG Y SGHPLD ++ Sbjct: 949 KGQFDLFA----GLSEEETGDAFKVEVPDQEWDRKHALTLEKEMLGLYVSGHPLDGFEAS 1004 Query: 975 L 975 L Sbjct: 1005 L 1005 >gi|255971496|ref|ZP_05422082.1| DNA polymerase III alpha subunit [Enterococcus faecalis T1] gi|255974111|ref|ZP_05424697.1| DNA polymerase III alpha subunit [Enterococcus faecalis T2] gi|256617966|ref|ZP_05474812.1| DNA polymerase III alpha subunit [Enterococcus faecalis ATCC 4200] gi|257089451|ref|ZP_05583812.1| DNA polymerase III alpha subunit [Enterococcus faecalis CH188] gi|307275526|ref|ZP_07556668.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2134] gi|307278911|ref|ZP_07559971.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0860] gi|312904606|ref|ZP_07763764.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0635] gi|312952684|ref|ZP_07771546.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0102] gi|21314374|gb|AAM46913.1|AF508326_1 DNA polymerase III E [Enterococcus faecalis] gi|255962514|gb|EET94990.1| DNA polymerase III alpha subunit [Enterococcus faecalis T1] gi|255966983|gb|EET97605.1| DNA polymerase III alpha subunit [Enterococcus faecalis T2] gi|256597493|gb|EEU16669.1| DNA polymerase III alpha subunit [Enterococcus faecalis ATCC 4200] gi|256998263|gb|EEU84783.1| DNA polymerase III alpha subunit [Enterococcus faecalis CH188] gi|306504393|gb|EFM73603.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0860] gi|306507914|gb|EFM77042.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2134] gi|310629200|gb|EFQ12483.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0102] gi|310632119|gb|EFQ15402.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0635] gi|315153119|gb|EFT97135.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0031] gi|315577423|gb|EFU89614.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0630] Length = 1109 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 338/1038 (32%), Positives = 544/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGS--EVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR+ + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRSLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|305681335|ref|ZP_07404142.1| DNA polymerase III subunit alpha [Corynebacterium matruchotii ATCC 14266] gi|305659540|gb|EFM49040.1| DNA polymerase III subunit alpha [Corynebacterium matruchotii ATCC 14266] Length = 1203 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 335/1015 (33%), Positives = 526/1015 (51%), Gaps = 57/1015 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ YS+L+G ++ + ++ A+ +TD N+F + F + Sbjct: 18 MAKKSSFVHLHNHTEYSMLDGMAKIDMLAEEATRLGMSAVGMTDHGNMFGSDSFYRAMTK 77 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQ------GKTPFPTVPSIVL----LVSTAEGYQRLIE 114 AGI+PIIG + + M Q K+ + L + TAEG L Sbjct: 78 AGIKPIIGIEAYLAPGSRFDMKRQRWGDESQKSDDVSASGAYLHQTMIAETAEGLHNLFY 137 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E T G+I TG SG I A + + Sbjct: 138 LSSMASYEGQLGKWPRMDAELIAEHAT-GIIGTTGCPSGDIQTRLRLGQFDKALETAAMW 196 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H + S+++++ +LP + TN+ ++ E AH+V++ Sbjct: 197 QDIYGRDNFFLELMDHGLNIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAHAHEVML 256 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRC---SFILQV 287 V +S DR + +++K+ +M ++ DL P+A +NT+ IA R S I + Sbjct: 257 CVQTGKTMSDPDRFKFDGTGYFVKSAEQMRELWDDLVPDACDNTLWIAERVQDYSSIWEA 316 Query: 288 HAPILPRFIEKECDDIQKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H + D+ + LR++ + GL R + +Y +R ++E+ Sbjct: 317 HP-----YDRMPIADVPEGHTPTTWLRHQVLDGLRDRFDGAEVPA-----NYIERAEYEI 366 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI + YFLIVA+ I+ A+ I VGPGRGS AGS+ AYALTIT+IDP+ LLFE Sbjct: 367 GVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPIHHGLLFE 426 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R S PD DIDF RR E+IRY ++G +++AQ+ITFG+++ K A++D RAL Sbjct: 427 RFLNPERPSAPDIDIDFDDRRRGEMIRYASERWGEDKIAQVITFGTVKTKQAIKDSARAL 486 Query: 466 --QMPYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVDRLLEI 514 Q Y DR+ K++P A +SL I D R+ EA DP V ++ + Sbjct: 487 YGQPGYQIADRITKVLPPPIMAKDISLAGIMDPEHDRYTEAGEVRQLIETDPDVRQIYDT 546 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEG+ R A HA +++ PL +PM++ +T + E GL+K DFL Sbjct: 547 ARGLEGVVRQAGVHACAVIMASVPLLDCIPMWKRAADGALITGWPYPACEAIGLLKMDFL 606 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ +L+ + R +DL + D Y LL TLG+FQL+S GM++ L+ Sbjct: 607 GLRNLTVIGDALENIKINRDETIDLENLAITDPNVYKLLARGDTLGVFQLDSGGMQELLK 666 Query: 634 GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQG 687 MQP DI+A ++LYRPGP ++ + Y +RKNG++ I IHP ++ LK ET G Sbjct: 667 RMQPTEFNDIVAALALYRPGPMGVNAHLDYADRKNGRKPITPIHPELEEALKDILDETYG 726 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQ+M+I++ ++ Y+ EAD R+AMGKK E + + E+F +G NG SK Sbjct: 727 LIVYQEQIMEISRRVANYTAGEADGFRKAMGKKKPEVLAAEYEKFSAGMFSNGYSKDAVD 786 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++ + FA Y FNKSHAA Y ++SY TA++K +Y E++AA +T D +K + Sbjct: 787 ALWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVSDKKDKSAIYLA 846 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866 + R I ++ P VN +F I + L A++ VG I+ E A + Sbjct: 847 NCRHLGIAVLSPDVNESAYNFLPVGQDIRFGLGAVRNVGEDVVASIVRERKAKGLYKDFT 906 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 D+ ++D N+RV ESL+ AGA D GYSR L+ ++ A +K ++ Sbjct: 907 DYLEKIDLTACNKRVTESLIKAGAFDSMGYSRKGLMMVFEDAVDAAIGPKKAMDKGQFDL 966 Query: 927 FAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPIL 975 F+ G ++T FS+ ++ E+ +LG Y SGHPLD ++ L Sbjct: 967 FSALGG--ESEVTENVFSISVPDDTWDRKHQLALERDMLGLYVSGHPLDGFEEAL 1019 >gi|229548984|ref|ZP_04437709.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|257421291|ref|ZP_05598281.1| DNA polymerase III subunit alpha [Enterococcus faecalis X98] gi|229306005|gb|EEN72001.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|257163115|gb|EEU93075.1| DNA polymerase III subunit alpha [Enterococcus faecalis X98] gi|315156892|gb|EFU00909.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0043] gi|315157679|gb|EFU01696.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0312] Length = 1109 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 338/1038 (32%), Positives = 544/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGS--EVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR+ + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRSLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELFENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|213965246|ref|ZP_03393443.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46] gi|213952098|gb|EEB63483.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46] Length = 1185 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 338/1032 (32%), Positives = 542/1032 (52%), Gaps = 84/1032 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+G ++ + D++A PA+ +TD N+F + F ++ + GI+P Sbjct: 5 SFVHLHNHTEYSMLDGMAKIDLLADEVARQGMPAVGVTDHGNMFGSNAFYRQMKSKGIKP 64 Query: 70 IIGCQLDIDMQDNL-KMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSRM 119 IIG + + + K Q P + +L + A+G + L L S Sbjct: 65 IIGIEAYMAPESRFNKKRIQWGEPHQRRDDVSGRGSYLHQTMLAANAQGLRNLFYLSSMA 124 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Q + R+ + E EG+I TG SG + A + ++ ++G Sbjct: 125 SYEGQISKYPRMDAELVAER-AEGIIATTGCPSGDVQTRLRLGQFDEALQAAGMWQDIYG 183 Query: 180 -DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 + ++ L H G D R R S+++++ LP + TN+ +++ + +AH+ ++ V Sbjct: 184 KENYFLELMDH-GLDIETRVR-SELLEIGRKLNLPPLVTNDCHYVTRDQAKAHEAMLCVQ 241 Query: 236 HSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILP 293 ++ DR + D Y +K+ EM + + L P A +NT+ IA R ++ Sbjct: 242 TGKTLNDPDRFKFDGDGYFIKSAEEMRATWDHLVPGACDNTLLIAERVEDYDEL------ 295 Query: 294 RFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 + E D + K + E L + + GL R + ++Y +R ++E+ Sbjct: 296 -WEEHPHDRMPKADVPEGETPTTWLHHNVMEGLRKRFEGREVP-----EEYIRRAEYEIE 349 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI + YFLIVA+ I+ A++ I VGPGRGS AGS+ AYA IT+IDP+ LLFER Sbjct: 350 VIDGKGYPSYFLIVAELIRHAREVGIKVGPGRGSAAGSLVAYATWITNIDPIEHGLLFER 409 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL- 465 FLNP+R S PD DIDF RRDE+IRY +++G ++VAQ++TFG+++ K AL+D R Sbjct: 410 FLNPERPSAPDIDIDFDDRRRDEMIRYAADRWGEDKVAQVVTFGTVKTKQALKDSARVQF 469 Query: 466 -QMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDRL 511 Q Y DR+ K +P DP HP +A + R+ DP V R+ Sbjct: 470 GQPGYQIADRITKALPPAIMAKDIPLGGIVDPEHPRYGEA----AEVRQLIETDPDVARI 525 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 E ++ LEG+ R HA +V+ PL +PM++ +T ++ E GL+K Sbjct: 526 YETARGLEGVVRQTGVHACAVVMASVPLMDHIPMWKRQADGAIITGWDYPACEAIGLLKM 585 Query: 572 DFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGL+ LT++ ++ + + RG V L + DD + Y LL+ TLG+FQL+ GMR+ Sbjct: 586 DFLGLRNLTVIGDCIEHIKSNRGETVLLDDLQTDDPKVYELLSRGDTLGVFQLDGGGMRE 645 Query: 631 ALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE---- 684 L+ MQP +DI+A ++LYRPGP ++ Y + KNG++ +IH +D LKE Sbjct: 646 LLKRMQPTGFDDIVASLALYRPGPMGVNAHFDYADIKNGRKPYNAIHAELDEQLKEILEE 705 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+I+YQEQ+M+I+Q L+ Y+ +AD R+AMGKK E + K+ F G +NG SK Sbjct: 706 THGLIVYQEQIMKISQKLANYTAGQADGFRKAMGKKKPEVLAKEFVNFEGGMLENGYSKD 765 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +++++ FA Y FNKSHAA Y ++SY TA++K +Y E++AA +T D+ K+ Sbjct: 766 AVQKLWDIILPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADDKNKLAI 825 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863 + D R I+++PP VN +DF+ I + L AI+ VG I++ +K F Sbjct: 826 YLSDCRHLGIKVLPPDVNESGMDFEPVGEDIRFGLGAIRNVGHDVVASIVKTREEKGKFT 885 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNR 919 S D+ ++++ N+R+ ESL+ AGA D G+ R L +++D++ + +K + Sbjct: 886 SFSDYLDKIETLPCNKRITESLIKAGAFDSLGHPRKGLALIHEEAIDSVLSTKKAADKGQ 945 Query: 920 TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPILRK 977 + F ++ T S+ I + E + E E+ +LG Y SGHPLD Sbjct: 946 FDLFAG-FGGDEDTGSESIFEIRVPDEKWDRKHELTLEREMLGLYVSGHPLD-------- 996 Query: 978 MGIKGYEESVAT 989 G+EES+A Sbjct: 997 ----GFEESLAA 1004 >gi|29375623|ref|NP_814777.1| DNA polymerase III, alpha subunit [Enterococcus faecalis V583] gi|227555152|ref|ZP_03985199.1| DNA polymerase III, alpha subunit [Enterococcus faecalis HH22] gi|257418632|ref|ZP_05595626.1| DNA polymerase III alpha subunit [Enterococcus faecalis T11] gi|29343084|gb|AAO80847.1| DNA polymerase III, alpha subunit [Enterococcus faecalis V583] gi|227175736|gb|EEI56708.1| DNA polymerase III, alpha subunit [Enterococcus faecalis HH22] gi|257160460|gb|EEU90420.1| DNA polymerase III alpha subunit [Enterococcus faecalis T11] gi|315574296|gb|EFU86487.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0309B] gi|315581632|gb|EFU93823.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0309A] gi|327534630|gb|AEA93464.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus faecalis OG1RF] Length = 1109 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 338/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|260584014|ref|ZP_05851762.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC 700633] gi|260158640|gb|EEW93708.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC 700633] Length = 1112 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 332/1042 (31%), Positives = 550/1042 (52%), Gaps = 89/1042 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQV S YSLL + L + +A+TD L A+EF I+P Sbjct: 2 TFTILQVTSGYSLLRSTIDLYRYVMTAKELGYQKLALTDEGVLHGAIEFYNLCRNQNIEP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC N + S+++ GYQ LIEL ++ Q + V Sbjct: 62 IIGCLFQYKQWRNAE----------AFSSMIVYAKDEIGYQSLIELSTQY----QKSKLV 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + + +E L ++ + + A ++ +VA +R L + +R + N+ H Sbjct: 108 SKDMEKIIKEASEHLQIVFPQENS--EWALECSNGEVAFQRWLFEAE---ERYFPNI--H 160 Query: 190 RGYDRYRESQVVQL------AYTHE-----LPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 G + +Q++ + A+ + LP V T +L ED ++ VL A+ Sbjct: 161 LGIE---SNQILPIPLEELEAWGQDFSMKLLPFVKT---FYLKAEDDFSYRVLKAIGDGE 214 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFI 296 +S + V+ +YL++ + S + E + E + L H +LP+F Sbjct: 215 TLS-TTQAEVSGQYYLQDEKTLTQQSSTILEGKLVRQLEEFVDSLKWKLSKHKLLLPKFQ 273 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E + +E E+ +++ E+ +Y RL++EL++I +M F Y Sbjct: 274 TPE-GKMSQEYLQEICQQSLKDKELV-----------KDEYESRLNYELSIIHQMGFDDY 321 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV D +++A + I GPGRGS AGS+ +Y L IT +DP+ + LLFERFLNP+R +MP Sbjct: 322 FLIVWDIMKYAHEAGIQTGPGRGSAAGSLVSYLLNITKVDPIEYQLLFERFLNPERYTMP 381 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF +RR++++ YV+ KYG VAQI TFG+ +K ALRDV R L + Q Sbjct: 382 DIDLDFPDNRREDILDYVRRKYGENHVAQIATFGTFGSKQALRDVCRVLGLTTVQAGEWS 441 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K IPN ++L+ + S+ + ++ P + E + ++EGL RH STHAAG+V+ Sbjct: 442 KAIPNQLG--INLKTAYEQSKNLQTLVSRSPKNQLIFETACRIEGLPRHLSTHAAGVVLY 499 Query: 536 DRPLSQLVPM-YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593 D+PL+ ++P+ Y+D +P+TQ+ MK++E+ GL+K DFLGL L++L S++ Sbjct: 500 DKPLTDVIPLIYKD--QQMPITQYTMKYVEQIGLLKMDFLGLTNLSILHDSIELTKSIYQ 557 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 ++ L+ IP DD +T L T GIFQ ES G+R+ L+ ++P +EDI A+ +LYRPG Sbjct: 558 HEIILNEIPLDDEKTLELFQMADTNGIFQFESDGIRRVLKKLRPTNLEDIAAVNALYRPG 617 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P++ I + RK+G+E + HP+++ +L+ T GV++YQEQVMQ+ ++G++L +AD+L Sbjct: 618 PMEQIDTFIKRKHGQEVVKYPHPILESILQSTYGVMVYQEQVMQVTSQMAGFTLGQADIL 677 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRA+GKK + ++ +K FI GA GI A +++ + +FA+YGFN+SHA AY++++ Sbjct: 678 RRAIGKKDAKVIETEKAHFIEGAIGKGIDVASATEVYQYIERFANYGFNRSHAFAYSLLA 737 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQ A+ K HYP F A + D K++ + +A+Q I I PS+NT D+ + Sbjct: 738 YQLAYFKAHYPRAFYTAILRFVGDRSPKLQTYFIEAKQRGISIKNPSINTSVDDYTATID 797 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I+ L AIKG+ + I+ + + PF DF R+ + + VLE+L+ AGA D Sbjct: 798 GIFIGLNAIKGLRRDFIQEILTQRKQNGPFIDFMDFAFRIGKRYCKKEVLEALIDAGAFD 857 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV-- 950 G +R L ++D + + ++ H + A E ++++ + F E+S++ Sbjct: 858 ELGKNRATLRATIDAVIESVKF--------HGSNIALE---LNEEMYPKYFEEEDSNIIE 906 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKG----YEESVATIRG--NNIRLAAMVVSK 1004 + E E VLGF S P + Y+ + ++ YE + ++ G NIR Sbjct: 907 KIEREIAVLGFPVSAFPTEPYEILYKEQKANRISTIYESKLVSVLGILKNIR-------- 958 Query: 1005 QQKKTRKGSRIGWVTFSEPAKE 1026 + +T+KG + + T + E Sbjct: 959 -KTRTKKGEPMAFGTIQDETGE 979 >gi|256761801|ref|ZP_05502381.1| DNA polymerase III alpha subunit [Enterococcus faecalis T3] gi|256957134|ref|ZP_05561305.1| DNA polymerase III alpha subunit [Enterococcus faecalis DS5] gi|257086401|ref|ZP_05580762.1| DNA polymerase III alpha subunit [Enterococcus faecalis D6] gi|294779297|ref|ZP_06744701.1| DNA polymerase III, alpha subunit [Enterococcus faecalis PC1.1] gi|307269669|ref|ZP_07551002.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4248] gi|256683052|gb|EEU22747.1| DNA polymerase III alpha subunit [Enterococcus faecalis T3] gi|256947630|gb|EEU64262.1| DNA polymerase III alpha subunit [Enterococcus faecalis DS5] gi|256994431|gb|EEU81733.1| DNA polymerase III alpha subunit [Enterococcus faecalis D6] gi|294453664|gb|EFG22062.1| DNA polymerase III, alpha subunit [Enterococcus faecalis PC1.1] gi|306513997|gb|EFM82588.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4248] gi|315027021|gb|EFT38953.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2137] gi|315031757|gb|EFT43689.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0017] gi|315034170|gb|EFT46102.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0027] gi|315171981|gb|EFU15998.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1342] gi|323480286|gb|ADX79725.1| DNA polymerase III subunit alpha [Enterococcus faecalis 62] Length = 1109 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 338/1038 (32%), Positives = 542/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|256960227|ref|ZP_05564398.1| DNA polymerase III alpha subunit [Enterococcus faecalis Merz96] gi|293382589|ref|ZP_06628522.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|293387817|ref|ZP_06632359.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|312906805|ref|ZP_07765802.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 512] gi|312978940|ref|ZP_07790666.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 516] gi|256950723|gb|EEU67355.1| DNA polymerase III alpha subunit [Enterococcus faecalis Merz96] gi|291080032|gb|EFE17396.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|291082792|gb|EFE19755.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|310627059|gb|EFQ10342.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 512] gi|311288377|gb|EFQ66933.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 516] Length = 1109 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 338/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLDYLREAETTMEQMLQIAGS--EVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR+ + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRSLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|295398598|ref|ZP_06808630.1| DNA-directed DNA polymerase III alpha subunit [Aerococcus viridans ATCC 11563] gi|294973199|gb|EFG48994.1| DNA-directed DNA polymerase III alpha subunit [Aerococcus viridans ATCC 11563] Length = 1162 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 336/1048 (32%), Positives = 544/1048 (51%), Gaps = 63/1048 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L V+S+YSLL +S+ + A + + D N + +L F + GI P+ Sbjct: 2 FVPLHVNSAYSLLTSPMSVEAYVQAGATAGYTHLGLADVNVMSGSLAFVRACEQNGITPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + ++ DN+K +V+ EGYQ L+ L S + L Q + + R Sbjct: 62 IGLTVQFNI-DNVK------------EELVVYAKNYEGYQHLMALSSSLKL--QAEANRR 106 Query: 131 ICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQV----AEKRLLTFKKLFGD-RLY 183 QEI + I++ +GP R Q E+ LL +++ F D +L+ Sbjct: 107 AIY---QEITMHADDYIVIFSAMTGPHMRYLKQGDGQADYDQLEEELLWWRRHFSDDQLF 163 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + L +++ +++L+ +PLVA + + + +D+ VL A+ ++ ++ Sbjct: 164 LGLSALEN-EQFHAKAIIELSEQSGVPLVAMPHIQYANPDDFFTQQVLEAIDNNKPMTGI 222 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSD-------LPEALENTVEIARRCSFILQVHAPILPRF 295 D +V H L+N + ++ D ++L+ + + +LP++ Sbjct: 223 DELKQVKGSHALRNPDQWAKMYQDPDDQDSVYKDSLDRLEVAVKGIDIVFPQIETLLPKY 282 Query: 296 -IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + E K L++ A AGL R+A A Y RL +EL+VI M F Sbjct: 283 PLPSEYTATPKY----LKDLAEAGLVKRVANITDA-------YTDRLAYELSVIHDMGFD 331 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFLIV D + +A +++I GPGRGS AG++ AY L ITD+DP+ LLFERFLNPDR + Sbjct: 332 DYFLIVWDVMNYAHQHHIQTGPGRGSAAGALVAYVLEITDVDPIANDLLFERFLNPDRQN 391 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD D+DF ++R EV+ YV KYG VAQI TFG+ A+ ALR+VG + Sbjct: 392 MPDIDLDFPDNKRQEVLDYVYRKYGDNHVAQIATFGTFGARQALRNVGSVFGKAQVTLSE 451 Query: 475 LCKLIPNDPAHPV-SLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 + N+P P +L ++ D S + RE + + ++KLEGL RH STHAAG+ Sbjct: 452 WANTVGNNPNLPAETLTSVYDQSQKLRELIENEDHGQLWFDTARKLEGLPRHVSTHAAGV 511 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI D+PL+ P+ + + +P TQ+ M +E GL+K DFL L LT+L L + + Sbjct: 512 VIADQPLTLHTPL-QASSTHIPNTQYTMGDVEAVGLLKVDFLSLSNLTILHDGLAAVGKL 570 Query: 593 GVKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 + +L IP DD +TY + T G+FQ ES G++ L+ + P IED++A+ +LYR Sbjct: 571 TSRPVKALDIPLDDPKTYEIFQHADTNGVFQFESDGIKNVLKQVAPTSIEDVVAVNALYR 630 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+ I + RK+G+E I HP + P+L T G+++YQEQVMQ+ Q ++G+SL EAD Sbjct: 631 PGPVQQIPHFVARKHGREAIAYPHPDLAPILAPTYGIMVYQEQVMQVTQKIAGFSLGEAD 690 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRA+GKK E ++ +++FISGA +NG +++AV I++ + FA+YGFNKSH+ AY+ Sbjct: 691 ILRRAIGKKKHETIENVRKQFISGAIENGYQESVAVQIYDYIEAFANYGFNKSHSFAYSY 750 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-V 830 ++YQ AW+K +YPV F ++ +K K +A+ ++++ P +N V Sbjct: 751 LAYQLAWIKANYPVAFYYGNLKHTRIYDKKGKNLVLEAKNHGVEVVNPDINKSFYGLSVV 810 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D+++ L I+G+ +++A A+ PF DF R+ L +L L AG Sbjct: 811 DDHQLQLGLGDIRGIPKRAVEEMIQAREAEGPFKDFTDFIHRLGKLALKEDILVKLAQAG 870 Query: 890 ALDCFGYSRMQL-LQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKIT-LEKFSV 945 ALD FGY+R L L+++ + + Q K + ++ + F+ KI +++F Sbjct: 871 ALDSFGYNRRTLQLEAIPKMITHEQLF-KTDNQRQTSLLGDDDLSAMFAPKIVEIDEF-- 927 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + ENE LG S + Y+ + GI Y E++ + V++ + Sbjct: 928 -DQHQLIENEIETLGQALSISLFEDYEG-FYQTGIIDYIENLK--ENSKAFFLGEVIAVK 983 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + T+K + +VT + + FP Sbjct: 984 RITTKKNQPMAFVTVKDQTGQISVTAFP 1011 >gi|256962530|ref|ZP_05566701.1| DNA polymerase III alpha subunit [Enterococcus faecalis HIP11704] gi|307272063|ref|ZP_07553328.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0855] gi|256953026|gb|EEU69658.1| DNA polymerase III alpha subunit [Enterococcus faecalis HIP11704] gi|306511283|gb|EFM80288.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0855] Length = 1109 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 338/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEVCQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|225021950|ref|ZP_03711142.1| hypothetical protein CORMATOL_01982 [Corynebacterium matruchotii ATCC 33806] gi|224945236|gb|EEG26445.1| hypothetical protein CORMATOL_01982 [Corynebacterium matruchotii ATCC 33806] Length = 1203 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 335/1015 (33%), Positives = 525/1015 (51%), Gaps = 57/1015 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ YS+L+G ++ + ++ A+ +TD N+F + F + Sbjct: 18 MAKKSSFVHLHNHTEYSMLDGMAKIDMLAEEATRLGMSAVGMTDHGNMFGSDSFYRAMTK 77 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQ------GKTPFPTVPSIVL----LVSTAEGYQRLIE 114 AGI+PIIG + + M Q K+ + L + TAEG L Sbjct: 78 AGIKPIIGIEAYLAPGSRFDMKRQRWGDESQKSDDVSASGAYLHQTMIAETAEGLHNLFY 137 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E T G+I TG SG I A + + Sbjct: 138 LSSMASYEGQLGKWPRMDAELIAEHAT-GIIGTTGCPSGDIQTRLRLGQFDKALETAAMW 196 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H + S+++++ +LP + TN+ ++ E AH+V++ Sbjct: 197 QDIYGRDNFFLELMDHGLNIENRVRSELLEIGRRLDLPPLVTNDCHYVLESQAHAHEVML 256 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRC---SFILQV 287 V +S DR + +++K+ +M ++ DL P+A +NT+ IA R S I + Sbjct: 257 CVQTGKTMSDPDRFKFDGTGYFVKSAEQMRELWDDLVPDACDNTLWIAERVQDYSSIWEA 316 Query: 288 HAPILPRFIEKECDDIQKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H + D+ + LR++ + GL R + +Y +R ++E+ Sbjct: 317 HP-----YDRMPIADVPEGHTPTTWLRHQVLDGLRDRFDGAEVPA-----NYIERAEYEI 366 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI + YFLIVA+ I+ A+ I VGPGRGS AGS+ AYALTIT+IDP+ LLFE Sbjct: 367 GVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPIHHGLLFE 426 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R S PD DIDF RR E+IRY ++G +++AQ+ITFG+++ K A++D RAL Sbjct: 427 RFLNPERPSAPDIDIDFDDRRRGEMIRYASERWGEDKIAQVITFGTVKTKQAIKDSARAL 486 Query: 466 --QMPYSQVDRLCKLIPND-PAHPVSLQAIAD--DSRFREAR------LADPSVDRLLEI 514 Q Y DR+ K++P A +SL I D R+ EA DP V ++ + Sbjct: 487 YGQPGYQIADRITKVLPPPIMAKDISLAGIMDPEHDRYTEAGEVRQLIETDPDVRQIYDT 546 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEG+ R A HA +++ PL +PM++ +T + E GL+K DFL Sbjct: 547 ARGLEGVVRQAGVHACAVIMASVPLLDCIPMWKRAADGALITGWPYPACEAIGLLKMDFL 606 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ +L+ + R +DL + D Y LL TLG+FQL+S GM++ L Sbjct: 607 GLRNLTVIGDALENIKINRDETIDLENLAITDPNVYKLLARGDTLGVFQLDSGGMQELLR 666 Query: 634 GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQG 687 MQP DI+A ++LYRPGP ++ + Y +RKNG++ I IHP ++ LK ET G Sbjct: 667 RMQPTEFNDIVAALALYRPGPMGVNAHLDYADRKNGRKPITPIHPELEEALKDILDETYG 726 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQ+M+I++ ++ Y+ EAD R+AMGKK E + + E+F +G NG SK Sbjct: 727 LIVYQEQIMEISRRVANYTAGEADGFRKAMGKKKPEVLAAEYEKFSAGMFSNGYSKDAVD 786 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++ + FA Y FNKSHAA Y ++SY TA++K +Y E++AA +T D +K + Sbjct: 787 ALWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVSDKKDKSAIYLA 846 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866 + R I ++ P VN +F I + L A++ VG I+ E A + Sbjct: 847 NCRHLGIAVLSPDVNESAYNFLPVGQDIRFGLGAVRNVGEDVVASIVRERKAKGLYKDFT 906 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 D+ ++D N+RV ESL+ AGA D GYSR L+ ++ A +K ++ Sbjct: 907 DYLEKIDLTACNKRVTESLIKAGAFDSMGYSRKGLMMVFEDAVDAAIGPKKAMDKGQFDL 966 Query: 927 FAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPIL 975 F+ G ++T FS+ ++ E+ +LG Y SGHPLD ++ L Sbjct: 967 FSALGG--ESEVTENVFSISVPDDTWDRKHQLALERDMLGLYVSGHPLDGFEEAL 1019 >gi|315173327|gb|EFU17344.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1346] Length = 1109 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 338/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLNDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G K A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|300173404|ref|YP_003772570.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG 18811] gi|299887783|emb|CBL91751.1| DNA polymerase III alpha subunit [Leuconostoc gasicomitatum LMG 18811] Length = 1115 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 335/1035 (32%), Positives = 543/1035 (52%), Gaps = 81/1035 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQ+ S+YSLL+ ++ I++ AIA+TD N ++ A++F Q A I+P+ Sbjct: 2 YAPLQILSAYSLLKNPNTIEQIIETAKKRHYQAIALTDINVMYGAVKFYQVAKENNIKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L ++ G TV IVL+ GYQ L+ + S K + + Sbjct: 62 FGVTLQVN----------GLVNTATVFPIVLIAENQTGYQNLMWISS-------AKMTTK 104 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-------------KRLLTFKKL 177 I L ++TG +G F N S++++ ++L+T K+ Sbjct: 105 ISEMTLD--------VITGHLAGI--NIIFPNDSEISQFIASEYTQSVDYWQQLIT--KI 152 Query: 178 FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 +LY+ + + ++V + ++ L+A + +L+ +D VL A+ + Sbjct: 153 DPKKLYLGINPQLA--PQIQERLVTFSAKNQAKLIALDTVDYLNPDDAFTTQVLKAIETN 210 Query: 238 TVVSQ-KDRPRVTPDHYLKNRSEM-VSIFSD--LPEA-LENTVEIARRCSFILQVHAPIL 292 T + K + H L++ E+ ++ ++ L A L N + +++ I+ L Sbjct: 211 TKLDDIKLLAQQIGTHVLQDFDEVQIAYLANDALKTAYLNNELLVSKSQVEIVFKQTATL 270 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P+F + + EN LR+ A GL R+ +A Y +RL EL +I + Sbjct: 271 PKF---RLPNENQTSENYLRSIAEKGLLERINGRQVA----LDQYEKRLQHELQIIDNLA 323 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F+ YFLIV D + +A + NI +G GRGS AGS+ AYAL ITD+DP++F LLFERFLNP R Sbjct: 324 FNDYFLIVWDIVNFAHQKNIQMGAGRGSAAGSLVAYALRITDVDPIQFGLLFERFLNPQR 383 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 + MPD DID+ ++RD ++ Y+ +KYG AQI+TFG+L AK ALRD R + + Sbjct: 384 IQMPDIDIDWPDNKRDLILNYLHDKYGQRNFAQILTFGTLAAKQALRDTARVFGVSQQMM 443 Query: 473 DRLCKLIPNDP-AHPVSLQAIADDSRFREARLAD-PSVDRLLEISQKLEGLYRHASTHAA 530 R+ +P V +Q + S L+D + + LL+++Q +EGL R+ STHAA Sbjct: 444 SRISNAVPQGKQGRKVLIQDTLNASNVLRTVLSDVDNGELLLKVAQHIEGLPRNYSTHAA 503 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFL 589 G+V+ PL +P+ + D +TQF +E GL+K D LGL L++L ++L D Sbjct: 504 GVVLSSEPLINTLPV-QSGSDDRLLTQFEKNPVEALGLLKIDILGLSNLSILAQTLYDAK 562 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 Q D+S IP DD +T L T G+FQ ESSG++ L ++P E I+A+ +L Sbjct: 563 KQLPDHFDISKIPLDDSKTLALYAKGDTNGVFQFESSGIKNVLRQLKPTTFEHIVAVNAL 622 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGP NI + R++G EK+ + + +L T G+I+YQEQVM +A+ +G++L E Sbjct: 623 YRPGPSRNIQSFIQRRHGHEKVTILDSSLKTILAPTFGIIVYQEQVMLVAETFAGFTLGE 682 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LR AM KK E+M E+F+ GA G A IF + +FA+YGFN+SHA AY Sbjct: 683 ADLLRSAMSKKKIEKMTAMHEKFVQGAIDLGHDGEQAEQIFAYIDEFANYGFNRSHAVAY 742 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 + +S++ A+MK HYPV F A + + + EKI+ + +A+ NI++ PP++N + Sbjct: 743 SKLSFELAYMKAHYPVAFFTALLNANLGSPEKIRSYIMEAKLRNIEVSPPNINQSQRFWT 802 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D ++ L I+GV T ++ E + F S++ F R+ K + L LV+A Sbjct: 803 ADDQKLQMGLTNIRGVRTDFVSAVLAERQENGHFKSIQSFIRRLPDKLRKQDTLIQLVYA 862 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD FGY+R +L+ +L ++ + A + + I + K SD TL Sbjct: 863 GALDAFGYNRSELITALADLIEAAGF--------GDFILSETKIKKSDDFTLTD------ 908 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQK 1007 + +E+ +G SGHPLD Y ++ K +E+ I+ + I+ ++ S ++ Sbjct: 909 --KLAHEKEAIGVNLSGHPLDTYSALIIS---KKFEQIADMIKKDQKIKTIVIIDSIRKT 963 Query: 1008 KTRKGSRIGWVTFSE 1022 +T+KG + ++T S+ Sbjct: 964 RTKKGEEMAFMTVSD 978 >gi|23308898|ref|NP_601331.2| DNA polymerase III subunit alpha [Corynebacterium glutamicum ATCC 13032] gi|21324900|dbj|BAB99523.1| DNA polymerase III alpha subunit [Corynebacterium glutamicum ATCC 13032] Length = 1194 Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust. Identities = 330/1017 (32%), Positives = 537/1017 (52%), Gaps = 63/1017 (6%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 ++ K SFVHL H+ +S+L+G ++ + D++ A PA+ ITD N++ + F +K Sbjct: 6 HMAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMT 65 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 GI+PIIG + + + K + P + +L G + L Sbjct: 66 EMGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLF 125 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R+ + E EG+I TG SG + A + Sbjct: 126 YLSSMASYEGQLGKWPRMDADIIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAM 184 Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ ++G D ++ L H G D R R S+++++ LP + TN+ ++ E +AH+ Sbjct: 185 WQDIYGRDNYFLELMDH-GLDIETRVR-SELLEIGRKLNLPPLVTNDCHYVLESQAQAHE 242 Query: 230 VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287 ++ V + +DR + +Y+K+ +M +++ D+ P+ +NT+ IA R ++ Sbjct: 243 AMLCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEI 302 Query: 288 HAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + E D + + E L ++ +AGLE R + + +DY +R Sbjct: 303 -------WEEHSHDRMPIADVPEGYTPTTWLHHEVMAGLEDRFSGQQVP-----EDYIER 350 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 ++E++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ Sbjct: 351 AEYEISVIDMKGYPSYFLIVAEIIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEH 410 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K AL+D Sbjct: 411 GLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKD 470 Query: 461 VGRAL--QMPYSQVDRLCK-LIPNDPAHPVSLQAIADDS--RFREARL------ADPSVD 509 R Q Y DR+ K L P A + L I D RF EA DP V Sbjct: 471 SARVQMGQPGYQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVK 530 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 R+ + ++ LEG+ R + HA +++ PL +PM++ +T ++ E GL+ Sbjct: 531 RIYDTARGLEGVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLL 590 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 K DFLGL+ LT++ +++ + A R G +DL + +D ETY LL TLG+FQL+ G Sbjct: 591 KMDFLGLRNLTVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGG 650 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP----LIDPM 681 M++ L+ MQP DI+A ++LYRPGP ++ Y +RKNG++ I IHP ++ + Sbjct: 651 MQELLKRMQPTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEI 710 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L ET G+I+YQEQ+M+I+Q ++ Y+ +AD R+AMGKK E ++K+ F G NG Sbjct: 711 LGETYGLIVYQEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGY 770 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S +++ + FA Y FNKSHAA Y ++S+ TA++K HY E++AA +T DN +K Sbjct: 771 SDAAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDK 830 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861 + D R I+++ P +N ++F I Y L AI+ VG I++ +K Sbjct: 831 SAIYLSDCRHLGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKG 890 Query: 862 -FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 F D+ ++D+ N+R+ ESL+ GA D G++R L+ ++ +K Sbjct: 891 LFKDFSDYLDKIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAAD 950 Query: 921 NKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFEN----EQRVLGFYFSGHPLDVYK 972 ++FA +D + + + +V + ++ E+ +LG Y SGHPLD Y+ Sbjct: 951 KGQFDLFAAFDSDNNDDVASFFQITVPDDEWDRKHELALEREMLGLYVSGHPLDGYE 1007 >gi|315168074|gb|EFU12091.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1341] Length = 1109 Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust. Identities = 338/1038 (32%), Positives = 542/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E +NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVAQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|257077930|ref|ZP_05572291.1| DNA polymerase III alpha subunit [Enterococcus faecalis JH1] gi|256985960|gb|EEU73262.1| DNA polymerase III alpha subunit [Enterococcus faecalis JH1] Length = 1109 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 337/1038 (32%), Positives = 542/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + ++ + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-ESYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|169629781|ref|YP_001703430.1| DNA polymerase III subunit alpha [Mycobacterium abscessus ATCC 19977] gi|169241748|emb|CAM62776.1| DNA polymerase III alpha subunit [Mycobacterium abscessus] Length = 1185 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 337/1015 (33%), Positives = 527/1015 (51%), Gaps = 63/1015 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + +L ++ A+ +TD N++ A EF A A G++P Sbjct: 7 SFVHLHNHTEYSMLDGAAKIKPMLAEVERLGMSAVGMTDHGNMYGASEFYNVAAATGVKP 66 Query: 70 IIGCQLDI---------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 IIG + I Q + ++ G + + ++ A G + L + Sbjct: 67 IIGIEAYIAPASRFDTKRVFWGDPGQKSDDVSGSG-----SYTHMTMVAENATGLRNLFK 121 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E + G+I TG SG + A + Sbjct: 122 LSSLASFEGQLGKWARMDADLIAEHAS-GIIATTGCPSGEVQTRLRLGQESEALAAAAKW 180 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG D ++ L H +R ++++ +P +ATN+ +++++ H+ L+ Sbjct: 181 QDIFGKDNFFLELMDHGLSIERRVREGLLEVGKKLGIPPLATNDCHYVTKDHAHNHEALL 240 Query: 233 AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVH-- 288 V +S R + D +YLK SEM ++ D +P A +NT+ IA R V Sbjct: 241 CVQTGKTLSDPTRFKFDGDGYYLKPASEMRDLWDDAVPGACDNTLLIAERVQSYEDVWNF 300 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 +P F E +D +++ LR + GLE R G +Y R +EL+VI Sbjct: 301 KDRMPIFPVPEGED----QDSWLRKEVDRGLERRFEG---VPGGVPDEYFTRAHYELDVI 353 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 + F YFL+V D + AK+ I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFL Sbjct: 354 KQKGFPAYFLVVGDLVSHAKEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFL 413 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466 NP+R S PD DIDF RR E++RY K+G +RVAQ+ITFG+++ KAAL+D R Q Sbjct: 414 NPERPSAPDIDIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAALKDSARIHYGQ 473 Query: 467 MPYSQVDRLCKLIPND-PAHPVSLQAIA--DDSRFREARL------ADPSVDRLLEISQK 517 ++ DR+ K +P A + + I + R++EA DP V + + + Sbjct: 474 PGFAIADRITKALPPPIMAKDIPVWGITNPEHERYKEAAEVRTLIDTDPDVRNIYQTALG 533 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ Sbjct: 534 LEGLIRNAGVHACAVIMSSEPLTDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLR 593 Query: 578 TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ +LD + A RG+ +DL +P DD TY LL+ TLG+FQL+ MR L MQ Sbjct: 594 NLTVIGDALDNIKANRGIDLDLDHLPLDDPATYELLSRGDTLGVFQLDGGPMRDLLRRMQ 653 Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK----ETQGVII 690 P DI+A+++LYRPGP+ Y +RKNG++ I IHP ++ LK ET G+I+ Sbjct: 654 PTGFNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETFGLIV 713 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQ+M IAQ ++ YS+ +AD LR+AMGKK E ++ + + F G + NG S+ ++ Sbjct: 714 YQEQIMFIAQKVASYSMGKADALRKAMGKKKLEVLEAEYKGFYEGMTNNGFSEKAVKALW 773 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 + + FA Y FNKSHAA Y ++S+ TA++K +YP E++A +T D+ +K + D R Sbjct: 774 DTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCR 833 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFC 869 + I ++PP VN +F I Y L ++ VG + ++ +K F D+ Sbjct: 834 RLGITVLPPDVNESVHNFASVGEDIRYGLGGVRNVGANVVQSLIATREEKGAFTDFSDYL 893 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 ++D N++V ESLV AGA D G+ R L + +K ++F Sbjct: 894 HKIDIAACNKKVTESLVKAGAFDSLGHPRKGLFLVQSDAVDSVLGTKKAEAMGQFDLFG- 952 Query: 930 EKGTFSDKITLEK-FSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRK 977 G D + F+++ +E E+ +LG Y SGHPL+ +L + Sbjct: 953 --GGGEDSVPASDIFAIKVPDDEWEEKHKLALEREMLGLYVSGHPLNGVAHLLSR 1005 >gi|313901726|ref|ZP_07835155.1| DNA polymerase III, alpha subunit [Thermaerobacter subterraneus DSM 13965] gi|313468014|gb|EFR63499.1| DNA polymerase III, alpha subunit [Thermaerobacter subterraneus DSM 13965] Length = 1162 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 341/1086 (31%), Positives = 544/1086 (50%), Gaps = 103/1086 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS+YS L+GA + ++++ AA PA+A+TD +N+ A+EF + A AAGI+PI Sbjct: 2 FVHLHCHSAYSFLDGASPVQALVERAAALGMPALALTDHDNVAGAVEFDRAARAAGIKPI 61 Query: 71 IGCQLDIDMQD-----------------------------------------------NL 83 G ++ + + + Sbjct: 62 QGAEVTLLLDEPAGPAGVRPARPRPAAGAGPGGARPAGGGLGTGGKPGGGGPGGPGDAAP 121 Query: 84 KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW---LQEI- 139 + +G+ P P +VLL + +GY RL L++R +L D+ + S L W L+E+ Sbjct: 122 RPAAEGR-PEPVTAHLVLLATGPQGYARLCRLLTRAHL-DRPRGSP--ALPWTVLLEEVA 177 Query: 140 -GTE-----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY 192 G E GLI L+G GP+ +A A +R + FG + ++ LQ G+ Sbjct: 178 PGGEPLAGHGLIALSGCRQGPVLQALLRGDRATALERARQLRDAFGRENFFLELQG--GW 235 Query: 193 ---DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 +R + LA + LVATN+ + + + + HD+L V V + R + Sbjct: 236 LPGNRALNRALADLAEHLGVGLVATNDVHYATRDRFAVHDLLACVRLGIPVDEPHPQRHL 295 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D+ LK+ M +F+ P+ALE T+ IA RC AP LP E + Sbjct: 296 NADNDLKSPRAMARMFAGYPQALEATLAIAERC-------APALP-----EGGVPRPAFP 343 Query: 309 NELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 +A A L ++ +GA+ + G RQRL+ EL++I +++ + YFL+V D ++A Sbjct: 344 LPPGVRAEAYLREQVERGALWRYGRITPRIRQRLEHELSIIEKLQLADYFLLVWDVARYA 403 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GRGS A S AY L ITD+D + LLFERFL+ +R PD DIDF R Sbjct: 404 RQQGIRCA-GRGSAADSAVAYCLGITDVDAIERGLLFERFLSLERAEQPDIDIDFDARYR 462 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D+V YV+ +YG E VA + T+ + A+ ALRD G+ L P + +DR+ K +P + + Sbjct: 463 DQVADYVEQRYGPEHVATVCTYQTYHARGALRDFGKVLGFPEAVIDRIAKRVPYYLSRQL 522 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+A+ R+ L + RL+ + + GL RH TH G+VI RPLS L P+ R Sbjct: 523 G-RALAEVPELRDLDLPRERLKRLVALCEAAAGLPRHMGTHLGGLVISRRPLSDLSPLQR 581 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 + + QF+ + +E+ GL+K D L L+TL +++++ + +R D IP DD Sbjct: 582 SAKGRR-ILQFDKRGVEELGLVKLDLLSLRTLGAVEEAVRVIRRRNPSFDYDHIPLDDRA 640 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRK 665 TY LL T T+G FQLES R ++P+ +ED++A V++ RPGPI D + + R+ Sbjct: 641 TYRLLGTGETVGAFQLESPAQRALQPRLRPENLEDVVASVAIIRPGPIKGDMVEPFLARR 700 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEE 724 G+E + +HP ++P+L++T GV+++QEQV++IA ++G++ EAD LRR M + EE Sbjct: 701 RGQEPVTYLHPKLEPILRKTWGVVLFQEQVIEIATAIAGFTPGEADRLRRVMTHARSPEE 760 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M+ F+ A + G+ + +A IF ++ +A YGF ++HAAA+ V +Y+TA++ HYP Sbjct: 761 MEDIGRHFLRRARQQGVGEEVAQAIFRMIQGYASYGFCEAHAAAFGVTAYKTAYLLAHYP 820 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 E+ AA ++L+ +A + IQI+P +NT V F I L A+KG Sbjct: 821 AEWYAALLSLQPMGYYPPNTLGVEAARRGIQILPLDINTSQVAFTATPGTIRIGLRAVKG 880 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKK-------LNRRVLESLVFAGALDCFGY 896 +G A I+ E PF L DF R+ ++ L+R + +L+ AGA D Sbjct: 881 LGDEPAAAIVAERERGGPFRHLMDFLLRLAARGGTAAGPVLDREQVAALIRAGAFDGLHA 940 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LL LD A+ A +D LEK+++E + + + Sbjct: 941 NRRALLWGLDEALATARQAAGGGDLAQGLAAAWSPPVVADFPDLEKWAMEREVLGIDVHR 1000 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 R H L + + +L G + G +R A + V + TR G I Sbjct: 1001 R--------HLLAMLREVLEARGYRPAAALRGLPPGVPVRAAGIPVRPHRPPTRSGRVIV 1052 Query: 1017 WVTFSE 1022 ++T + Sbjct: 1053 FLTLED 1058 >gi|307286902|ref|ZP_07566982.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0109] gi|312900994|ref|ZP_07760287.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0470] gi|306502027|gb|EFM71314.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0109] gi|311291895|gb|EFQ70451.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0470] Length = 1109 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 337/1038 (32%), Positives = 541/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L +EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGVVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|237785363|ref|YP_002906068.1| DNA polymerase III subunit alpha [Corynebacterium kroppenstedtii DSM 44385] gi|237758275|gb|ACR17525.1| DNA polymerase III, alpha subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 1199 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 331/1023 (32%), Positives = 535/1023 (52%), Gaps = 77/1023 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+G ++ ++D++ PA+ +TD N+F + F + A I+P Sbjct: 12 SFVHLHNHTEYSMLDGMAKVDLLVDEVKRQNMPAVGMTDHGNMFGSDAFYRAMTANDIKP 71 Query: 70 IIG--CQLDIDMQDNLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG C + D + N K G+ + ++ A G + L L S Sbjct: 72 IIGVECYMAPDSRFNKKRVRWGEAHQKRDDVSASGAYLHQTMIAENATGLKNLFYLSSMA 131 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Q + R+ + E +EG+I T SG + A K ++ ++G Sbjct: 132 SYEGQLGKWPRMDAELIAE-HSEGIIATTACPSGEVQTRLRLGQFDEALKAAAKWQDIYG 190 Query: 180 -DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H R ++++++ +P + TN+ +++++ +H+V++ V Sbjct: 191 KDNYFLELMDHGIEIEQRVRNELLEIGRKLNIPPLVTNDCHYVTKDQARSHEVMLCVQTG 250 Query: 238 TVVSQK------DRPRVTPD-HYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHA 289 + +++ +R D +YLK+ EM + D+ P +NT+ IA R ++ Sbjct: 251 STMNEPTLDQGGNRFAFNGDGYYLKSAREMRDTWDDMVPGGCDNTLLIAERVGDYSEIWE 310 Query: 290 PI----LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 P +P++ E + L ++ GL+ R + Q+Y R +E+ Sbjct: 311 PHTHDRMPKYDVPEG----YTPTSWLTHEVEQGLKKRFEGQPVP-----QEYTDRAKYEI 361 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI + YFL+VAD I+ A++ I VGPGRGS AGS+ AYALTIT+IDPL+ LLFE Sbjct: 362 GVIDFKGYPSYFLVVADLIKHARRVGIRVGPGRGSAAGSLVAYALTITNIDPLQHGLLFE 421 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R S PD DIDF RR E+IRY + +G ++VAQ+ITFG+++ K AL+D RA Sbjct: 422 RFLNPERPSAPDIDIDFDDRRRGEMIRYAADNWGEDKVAQVITFGTVKTKQALKDSARAH 481 Query: 466 --QMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPSVDR 510 Q + +R+ K +P DP HP +A + R+ DP V + Sbjct: 482 FGQPGFQMAERITKALPAPIMAKDIPLSGIVDPEHPRYSEA----AEVRQLIETDPDVKK 537 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 + + ++ LEG+ R A HA +++ PL +PM++ + +T + E GL+K Sbjct: 538 IFDTARGLEGVVRQAGVHACAVIMASVPLLDHIPMWKRAQDGAIITGWPYPACEAIGLLK 597 Query: 571 FDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 DFLGL+ LT++ ++ + + RG +DL + D TY LL+ TLG+FQL+S GMR Sbjct: 598 MDFLGLRNLTVIGDCIENIKENRGEDLDLEGLSVVDEPTYELLSRGDTLGVFQLDSGGMR 657 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHP-LIDPM---LK 683 + L+ M P DI+A ++LYRPGP+ Y +RKNG+EKI IHP L +P+ L Sbjct: 658 ELLKRMGPTEFSDIVAALALYRPGPMGEGAHWSYADRKNGREKITPIHPELEEPLRDILA 717 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+I+YQEQ+M+I+Q ++ YS +AD R+AMGKK E + K++ F +G +NG S Sbjct: 718 ETYGLIVYQEQIMKISQKVANYSAGQADSFRKAMGKKKPEVLAKERVSFEAGMKENGYSD 777 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +++++ FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K Sbjct: 778 DAINTLWKVILPFAGYAFNKSHAAGYGLVSFWTAYLKANYTAEYMAALLTSVSDKKDKSA 837 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PF 862 + D R I ++ P VN+ F+ I + L A++ VG I+ +K F Sbjct: 838 IYLSDCRHLGIDVLSPDVNSSKYTFQSVGKDIRFGLGAVRNVGEDVVESIVSTRREKGAF 897 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKN 918 D+ +++D+ NRRV ESL+ AGA D G+ R L ++D++ + +K Sbjct: 898 KDFTDYLNKIDTIACNRRVTESLIKAGAFDSMGHPRKGLYLIHEDAVDSVISTKKAADKG 957 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYK 972 + ++FA G ++ + FS+E ++ E+ +LG Y S HPLD Y+ Sbjct: 958 QF----DLFAGLGGEAEEEDS--AFSIEVPDQEWDRKHKLALEREMLGLYVSEHPLDGYE 1011 Query: 973 PIL 975 L Sbjct: 1012 ETL 1014 >gi|315165092|gb|EFU09109.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1302] Length = 1109 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 337/1038 (32%), Positives = 541/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L +EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGVVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|62390966|ref|YP_226368.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum ATCC 13032] gi|41326305|emb|CAF20467.1| PUTATIVE DNA POLYMERASE III, ALPHA CHAIN [Corynebacterium glutamicum ATCC 13032] Length = 1188 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 330/1016 (32%), Positives = 536/1016 (52%), Gaps = 63/1016 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ +S+L+G ++ + D++ A PA+ ITD N++ + F +K Sbjct: 1 MAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMTE 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSI---------VLLVSTAEGYQRLIE 114 GI+PIIG + + + K + P + +L G + L Sbjct: 61 MGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLFY 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + A + + Sbjct: 121 LSSMASYEGQLGKWPRMDADIIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 + ++G D ++ L H G D R R S+++++ LP + TN+ ++ E +AH+ Sbjct: 180 QDIYGRDNYFLELMDH-GLDIETRVR-SELLEIGRKLNLPPLVTNDCHYVLESQAQAHEA 237 Query: 231 LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVH 288 ++ V + +DR + +Y+K+ +M +++ D+ P+ +NT+ IA R ++ Sbjct: 238 MLCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEI- 296 Query: 289 APILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + E D + + E L ++ +AGLE R + + +DY +R Sbjct: 297 ------WEEHSHDRMPIADVPEGYTPTTWLHHEVMAGLEDRFSGQQVP-----EDYIERA 345 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 ++E++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ Sbjct: 346 EYEISVIDMKGYPSYFLIVAEIIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHG 405 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K AL+D Sbjct: 406 LLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDS 465 Query: 462 GRAL--QMPYSQVDRLCK-LIPNDPAHPVSLQAIADDS--RFREARL------ADPSVDR 510 R Q Y DR+ K L P A + L I D RF EA DP V R Sbjct: 466 ARVQMGQPGYQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKR 525 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 + + ++ LEG+ R + HA +++ PL +PM++ +T ++ E GL+K Sbjct: 526 IYDTARGLEGVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLK 585 Query: 571 FDFLGLKTLTLLQKSLDFL-AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 DFLGL+ LT++ +++ + A R G +DL + +D ETY LL TLG+FQL+ GM Sbjct: 586 MDFLGLRNLTVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGM 645 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP----LIDPML 682 ++ L+ MQP DI+A ++LYRPGP ++ Y +RKNG++ I IHP ++ +L Sbjct: 646 QELLKRMQPTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEIL 705 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 ET G+I+YQEQ+M+I+Q ++ Y+ +AD R+AMGKK E ++K+ F G NG S Sbjct: 706 GETYGLIVYQEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYS 765 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++ + FA Y FNKSHAA Y ++S+ TA++K HY E++AA +T DN +K Sbjct: 766 DAAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKS 825 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP- 861 + D R I+++ P +N ++F I Y L AI+ VG I++ +K Sbjct: 826 AIYLSDCRHLGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGL 885 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F D+ ++D+ N+R+ ESL+ GA D G++R L+ ++ +K Sbjct: 886 FKDFSDYLDKIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADK 945 Query: 922 KHENIFAHEKGTFSDKI-TLEKFSVENSSVRFEN----EQRVLGFYFSGHPLDVYK 972 ++FA +D + + + +V + ++ E+ +LG Y SGHPLD Y+ Sbjct: 946 GQFDLFAAFDSDNNDDVASFFQITVPDDEWDRKHELALEREMLGLYVSGHPLDGYE 1001 >gi|300780861|ref|ZP_07090715.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium genitalium ATCC 33030] gi|300532568|gb|EFK53629.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium genitalium ATCC 33030] Length = 1185 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 332/1015 (32%), Positives = 526/1015 (51%), Gaps = 64/1015 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ +S+L+G ++ + ++++ PA+ +TD N+F + F ++ Sbjct: 1 MAKKSSFVHLHNHTEFSMLDGMAKVDLLAEEVSRQGMPAVGMTDHGNMFGSNAFYRRMTD 60 Query: 65 AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AGI+PIIG + + + + N K G TP + +L A G + L Sbjct: 61 AGIKPIIGIEAYMAPESRFNKKRVLWG-TPDQKGDDVSASGAYLHQTMLAENATGLRNLF 119 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R+ + E +G+I TG SG + A + Sbjct: 120 RLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQYDQALEAAAM 178 Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++ ++G D ++ L H +R ++++ +LP + TN+ ++ E AH+ + Sbjct: 179 WQDIYGKDNYFLELMDHGLTIERRVREDLLRIGEALDLPPLVTNDCHYVLESQAPAHEAM 238 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHA 289 + V + DR + +Y+K+ +M + + D+ P+ +NT+ +A R ++ A Sbjct: 239 LCVQTGKTLLDPDRFKFDGTGYYIKSAEQMRNDWDDMVPDGCDNTLWVAERVGDYGELWA 298 Query: 290 PILPRFIEKECD--DIQKEEENE-----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 E D I E E LR + GL+ R + +DYR R D Sbjct: 299 -------EHPHDRMPIATVPEGETPTTWLRKEVHRGLDERFEGKEVP-----EDYRTRAD 346 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +E++VI + YFLIVA+ I+ A+ I VGPGRGS AGS+ AYALTIT+IDP+ L Sbjct: 347 YEIDVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPMEHGL 406 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R S PD DIDF RR E++ Y +G +++AQ+ITFG+++ K A++D Sbjct: 407 LFERFLNPERPSAPDIDIDFDDRRRGEMLTYAAENWGEDKIAQVITFGTVKTKQAIKDSA 466 Query: 463 RA--LQMPYSQVDRL-CKLIPNDPAHPVSLQAIAD--DSRFREAR------LADPSVDRL 511 + Q + + DR+ L P A + L I D R+ EA DP V ++ Sbjct: 467 KVNFGQEGFQKADRINAALPPAIMAKDIPLSGITDPEHDRYSEATEVRSMIETDPDVAKI 526 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 E ++ LEG+ R A HA +++ PL +PM++ +T ++ E GL+K Sbjct: 527 YETARGLEGVVRQAGVHACAVIMASVPLMDHIPMWKRPADGALITGWDYPACEAIGLLKM 586 Query: 572 DFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGL+ LT++ +++ + + RG +DL + D+ Y LL+ TLG+FQL+ GM++ Sbjct: 587 DFLGLRNLTVIGDAIENIEKNRGETIDLEALDTDNEAVYELLSRGDTLGVFQLDGGGMQE 646 Query: 631 ALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK----E 684 L+ M+P DI+A ++LYRPGP ++ Y +RKNG++ I IHP ++ LK E Sbjct: 647 LLKRMKPTGFNDIVASLALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLKEILDE 706 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+I+YQEQ+M I+Q ++ Y+ +AD R+AMGKK E + ++ E+F G NG SK Sbjct: 707 TYGLIVYQEQIMNISQKVANYTAGQADGFRKAMGKKKPEVLAQEYEKFSQGMFDNGYSKA 766 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 ++ + FA Y FNKSHAA YA++SY TA++K +Y E++AA +T D +K Sbjct: 767 AVDALWGTIEPFASYAFNKSHAAGYALVSYWTAYLKANYAAEYMAALLTSVGDKKDKSAI 826 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFD 863 + D R I ++PP +N F D I Y LAAI+ VG IME+ K F Sbjct: 827 YLADCRHLGISVLPPDINESEETFMAVDKDIRYGLAAIRNVGAEVVESIMESRRTKGAFT 886 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 + D+ ++D N+R+ ESL+ AGA D + R LL D+ +K Sbjct: 887 NFSDYLDKIDLLPCNKRITESLIKAGAFDSLDHPRKGLLLVSDDAVDSVLTTKKAADKGQ 946 Query: 924 ENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYK 972 ++F+ G D+ FS+E +E E+ +LG Y SGHPLD ++ Sbjct: 947 FDLFSAFGG---DQEATNAFSIEVPDDEWEKKHKLALEREMLGLYVSGHPLDGFE 998 >gi|257083953|ref|ZP_05578314.1| DNA polymerase III alpha subunit [Enterococcus faecalis Fly1] gi|256991983|gb|EEU79285.1| DNA polymerase III alpha subunit [Enterococcus faecalis Fly1] Length = 1109 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 335/1038 (32%), Positives = 542/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF----P 272 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 273 VPANQTAGSYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLNDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|172040866|ref|YP_001800580.1| DNA polymerase III subunit alpha [Corynebacterium urealyticum DSM 7109] gi|171852170|emb|CAQ05146.1| DNA polymerase III, alpha subunit [Corynebacterium urealyticum DSM 7109] Length = 1188 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 331/1029 (32%), Positives = 535/1029 (51%), Gaps = 91/1029 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+G ++ + ++++ PA+ +TD N+F A F + AAGI+P Sbjct: 5 SFVHLHNHTEYSMLDGMAKVDMLAEEVSRQGMPAVGMTDHGNMFGADAFYRTMTAAGIKP 64 Query: 70 IIGCQ--LDIDMQDNLKMTNQGK--------TPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + + D + N+ G + +L A G + L L S Sbjct: 65 IIGIEAYMAPDSRFNMNRVRWGNPEQKKDDVSASGAYLHQTMLAENATGLRNLFYLSSMA 124 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Q + R+ + E EG+I TG SG + A + ++ ++G Sbjct: 125 SYEGQLGKWPRMDAELIAE-HAEGVIATTGCPSGDVQTRLRLGQFNEALEAAAMWQDIYG 183 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H ++ +++++ +LP + TN+ ++ E AH+V++ V Sbjct: 184 KDNFFLELMDHGLEIEKRVRDELMEIGRKLDLPPLVTNDCHYVLENQAAAHEVMLCVQTG 243 Query: 238 TVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQ 286 + + D P + +Y++ ++ + + + P+ +NT+ IA R +Q Sbjct: 244 STM---DEPTIDEGGKRFAFSGSSYYIRTAEDIRNQWDHVVPDGCDNTLWIAER----VQ 296 Query: 287 VHAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 + I + E D + E E L ++ GLE R G + Q+Y Sbjct: 297 DYGEI---WEEHPYDRMPVAEVPEGHTPTSWLTHEVNRGLEERFNGGPVP-----QEYLD 348 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 R ++E++VI + YFLIVA+ I++A+ I VGPGRGS AG++ AYALTIT+IDP+ Sbjct: 349 RAEYEISVIDMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPIE 408 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 LLFERFLNP+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K A++ Sbjct: 409 HGLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYASDRWGEDKIAQVITFGTVKTKQAIK 468 Query: 460 DVGRAL--QMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLA 504 D RA Q + DR+ K +P DP HP +A + R+ Sbjct: 469 DSARAWYGQAGFQMADRITKALPPAIMAKDIELKGIKDPEHPRYAEA----AEVRQLIDT 524 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 DP V+++ E + LEG+ R A HA +++ PL +PM++ + +T + E Sbjct: 525 DPQVNKIYEDALGLEGVVRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACE 584 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GL+K DFLGL+ LT++ ++D + + RG DL + +D TY LL TLG+FQL Sbjct: 585 AIGLLKMDFLGLRNLTVIGDAIDNIKKNRGEDFDLEGLATEDAATYELLARGDTLGVFQL 644 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDP 680 +S GM++ L+ MQP DI+A ++LYRPGP + Y +RKNG++ I IHP L +P Sbjct: 645 DSGGMQELLKRMQPTGFNDIVAALALYRPGPMGVKAHWEYADRKNGRKPITPIHPELEEP 704 Query: 681 M---LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 + L+ET G+I+YQEQ+M+I+Q ++ Y+ +AD R+AMGKK +E +D++ E F G Sbjct: 705 LKEILEETYGLIVYQEQIMRISQKVANYTAGQADGFRKAMGKKKREVLDQEYETFSGGMI 764 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 NG SK ++ + FADY FNKSHAA Y ++S+ TA++K +Y E++AA +T + Sbjct: 765 DNGYSKDAIDTLWNTILPFADYAFNKSHAAGYGLVSFWTAYLKANYTAEYMAALLTSVSN 824 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857 +K + D R I+++ P VN F+ I + L A++ VG I+ + Sbjct: 825 QKDKSAIYLSDCRHLGIKVLSPDVNESAFTFQSVGEDIRFGLGAVRNVGEDVVESIIASR 884 Query: 858 ADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYA 912 +K F D+ ++D+ ++RV ESL+ AGA D G+ R L+ ++D + Sbjct: 885 EEKGDFKDFSDYLDKIDAVAASKRVTESLIKAGAFDSLGHPRKGLVLVHEDAVDAVVATK 944 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGH 966 + K + + + A E G + F VE +E E+ +LG Y SGH Sbjct: 945 KAAAKGQFDLFAGLGAEEAG--------DVFKVEVPDQEWERKHELALERDMLGLYVSGH 996 Query: 967 PLDVYKPIL 975 PLD ++ L Sbjct: 997 PLDGFEDAL 1005 >gi|329577043|gb|EGG58517.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467] Length = 1109 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 337/1038 (32%), Positives = 541/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPLQLG-SNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +A +LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQAAILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|295114593|emb|CBL33230.1| DNA polymerase III catalytic subunit, DnaE type [Enterococcus sp. 7L76] Length = 930 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 312/913 (34%), Positives = 496/913 (54%), Gaps = 51/913 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L+ E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCRVDIPLHQKLLPHF---PV 273 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D Q + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 274 PDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 VP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NSVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAIKRVYNQTIHLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQ 909 R QL L+ NIQ Sbjct: 864 RRQLAVGLESNIQ 876 >gi|145296091|ref|YP_001138912.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum R] gi|140846011|dbj|BAF55010.1| hypothetical protein [Corynebacterium glutamicum R] Length = 1194 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 329/1017 (32%), Positives = 537/1017 (52%), Gaps = 63/1017 (6%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 ++ K SFVHL H+ +S+L+G ++ + D++ A PA+ ITD N++ + F +K Sbjct: 6 HMAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMT 65 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 GI+PIIG + + + K + P + +L G + L Sbjct: 66 EMGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLF 125 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R+ + E EG+I TG SG + A + Sbjct: 126 YLSSMASYEGQLGKWPRMDADIIAER-AEGIIATTGCPSGDVQTRLRLGQFDEALEAAAM 184 Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ ++G D ++ L H G D R R S+++++ LP + TN+ ++ E +AH+ Sbjct: 185 WQDIYGRDNYFLELMDH-GLDIETRVR-SELLEIGRKLNLPPLVTNDCHYVLESQAQAHE 242 Query: 230 VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287 ++ V + +DR + +Y+K+ +M +++ D+ P+ +NT+ IA R ++ Sbjct: 243 AMLCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEI 302 Query: 288 HAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + E D + + E L ++ +AGL+ R + + +DY +R Sbjct: 303 -------WEEHSHDRMPIADVPEGHTPTSWLHHEVMAGLKDRFSGQQVP-----EDYIER 350 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 ++E++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ Sbjct: 351 AEYEISVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEH 410 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K AL+D Sbjct: 411 GLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKD 470 Query: 461 VGRAL--QMPYSQVDRLCK-LIPNDPAHPVSLQAIADDS--RFREARL------ADPSVD 509 R Q Y DR+ K L P A + L I D RF EA DP V Sbjct: 471 SARVQMGQPGYQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVK 530 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 R+ + ++ LEG+ R + HA +++ PL +PM++ +T ++ E GL+ Sbjct: 531 RIYDTARGLEGVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLL 590 Query: 570 KFDFLGLKTLTLLQKSLDFL-AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 K DFLGL+ LT++ +++ + A R G +DL + +D ETY LL TLG+FQL+ G Sbjct: 591 KMDFLGLRNLTVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGG 650 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP----LIDPM 681 M++ L+ MQP DI+A ++LYRPGP ++ Y +RKNG++ I IHP ++ + Sbjct: 651 MQELLKRMQPTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEI 710 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L ET G+I+YQEQ+M+I+Q ++ Y+ +AD R+AMGKK E ++K+ F G NG Sbjct: 711 LGETYGLIVYQEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGY 770 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S +++ + FA Y FNKSHAA Y ++S+ TA++K HY E++AA +T DN +K Sbjct: 771 SDAAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDK 830 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861 + D R I+++ P +N ++F I Y L AI+ VG I++ +K Sbjct: 831 SAIYLSDCRHLGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKG 890 Query: 862 -FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 F D+ ++D+ N+R+ ESL+ GA D G++R L+ ++ +K Sbjct: 891 LFKDFSDYLDKIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAAD 950 Query: 921 NKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFEN----EQRVLGFYFSGHPLDVYK 972 ++FA +D + + + +V + ++ E+ +LG Y SGHPLD Y+ Sbjct: 951 KGQFDLFAAFDSDNNDDVASFFQITVPDDEWDRKHELALEREMLGLYVSGHPLDGYE 1007 >gi|229546892|ref|ZP_04435617.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1322] gi|256852698|ref|ZP_05558069.1| DNA polymerase III [Enterococcus faecalis T8] gi|229308057|gb|EEN74044.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1322] gi|256712043|gb|EEU27080.1| DNA polymerase III [Enterococcus faecalis T8] gi|315029734|gb|EFT41666.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4000] Length = 1109 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 335/1038 (32%), Positives = 543/1038 (52%), Gaps = 68/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L++E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTKEEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 P + +YL+ +M+ I E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAGNCRVDIPLHQKLLPHF----P 272 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + LR + L R+ + + Y++RL+ EL +I M F YFLIV Sbjct: 273 VLANQTAGSYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIV 325 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 326 WDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +P Sbjct: 386 DIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L Sbjct: 446 NKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLL 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 LVP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ Sbjct: 505 NLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLN 563 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI Sbjct: 564 QIPLNDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNID 623 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ K Sbjct: 624 VFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISK 683 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++ Sbjct: 684 KKKDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYL 743 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP F A + N KIK++ +AR+ I+ PS+N F + +I + Sbjct: 744 KVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFG 803 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D + Sbjct: 804 FSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPN 863 Query: 898 RMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL L+ NIQ + + E + E E+ + R E E+ Sbjct: 864 RRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEE 911 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRI 1015 + LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ Sbjct: 912 QYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQM 967 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + FP Sbjct: 968 AFVDGDDTTGSISLTLFP 985 >gi|193216861|ref|YP_002000103.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1] gi|193002184|gb|ACF07399.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1] Length = 999 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 312/916 (34%), Positives = 486/916 (53%), Gaps = 96/916 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +++ ++S YS L+ + L+N+++ + +AIT+ N FS F +K A ++ I Sbjct: 3 LINIHLNSIYSFLQSTIQLDNLIENALKNNVEYLAITERGNFFSFAPFYEKCQAHKLKSI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +DI++ QGK P+ + A+ L EL + Y + K+ Sbjct: 63 FGLDVDIEI--------QGK-PYR-------FILHAKNNTGLFELFNLSYDILSNKKL-- 104 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 +L ++ I+ + ++ + QV + D Y++L H Sbjct: 105 ----YLDDVANNKNIIFIE----HVLDGYYKKTKQVLDY----------DNHYISLGLHE 146 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 + N++F++E H +L ++H + D + Sbjct: 147 ----------------------VSENAVFINEN---LHKIL--ISHHNAIMDFDDNSLIK 179 Query: 251 DHYLKNRSEMVS------------IFSDLPEAL-ENTVEIARRCSFILQVHAPILPRFIE 297 L N + S + +DL + L T E+ + C F L + ILP+F Sbjct: 180 ILALMNEDAINSNATFDILEFGFAVATDLEKKLITKTNELMQGCYFELPKNDYILPKFQN 239 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + D K + ++N V E K +Y+ RL E+++I ++KF YF Sbjct: 240 ELNLDSTKYLQTLIKNNIVKRFE---------KSAWNDEYKLRLLHEMSIIEKLKFEDYF 290 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LI+ D++ WAKKN I +GPGRGS AGS+ +Y L IT++DPL++ L+FERFLNP+R+SMPD Sbjct: 291 LIIQDWVNWAKKNKIAIGPGRGSAAGSLVSYILGITNVDPLKYGLIFERFLNPERVSMPD 350 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DID +RR EVI Y+ KYG +VA I+TF SL K+A+RDV R + + ++ + K Sbjct: 351 IDIDVQDNRRQEVIEYLNKKYGSSQVANIVTFASLGKKSAIRDVMRTYDVSPAMINEVSK 410 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVD-----RLLEISQKLEGLYRHASTHAAGI 532 LI L+ + +F A + D ++L + +LEG YR THAAG+ Sbjct: 411 LIGLKEGSL--LEEYQSNKKFALALNSLNKEDANFSTKILNYASQLEGFYRQTGTHAAGV 468 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQ 591 +I +P++Q++P Y+ + + TQ +M+++E GL+K D LGLKTLT +Q+ L Sbjct: 469 IIAPKPINQIIPTYK-IEDGIQQTQVSMEYLEHFGLLKMDILGLKTLTTIQEVLLQIKKT 527 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 + + +DL+ I ++D T+ LL T T+GIFQLES GM +AL+ + D DI+A +SLYR Sbjct: 528 KNLDLDLAKIKYEDQLTFDLLNTGSTVGIFQLESFGMTKALKQIHVDSFNDIVATISLYR 587 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DN+ VY RKN E I SI D ++K T G+IIYQEQ+MQI Q ++ S S+AD Sbjct: 588 PGPMDNLKVYAKRKNAHEPIPSISKAYDEIVKGTYGIIIYQEQIMQIVQAVANLSFSQAD 647 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +RR + KK +EM K F++ A KNG S+ A+NIFEL++KFADYGFNKSHA +YA+ Sbjct: 648 NIRRIISKKKVDEMHAVKTNFVNSAIKNGYSEKDALNIFELISKFADYGFNKSHAVSYAM 707 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQ A++K HYP+EF +A ++ E I +F +A+ I+I+ P +N + + Sbjct: 708 ISYQMAYLKAHYPLEFYSAIISSAHGAHETIARFSAEAKSLGIEIISPDINLSNQNATIL 767 Query: 832 DNRIYYSLAAIKGVGTTTARHIME-ASADKPF-DSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I L IKG+G T R I+E + P+ + L F + K LE L+ A Sbjct: 768 NKAIVLPLNMIKGIGPETVRLILEDRKINGPYRNFLHLFVCLMHIKNFGLANLEILIKAN 827 Query: 890 ALDCFGYSRMQLLQSL 905 AL F ++ +L + Sbjct: 828 ALRTFNINQATMLNEI 843 >gi|227548935|ref|ZP_03978984.1| DNA polymerase III subunit alpha [Corynebacterium lipophiloflavum DSM 44291] gi|227078960|gb|EEI16923.1| DNA polymerase III subunit alpha [Corynebacterium lipophiloflavum DSM 44291] Length = 1186 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 330/1011 (32%), Positives = 531/1011 (52%), Gaps = 55/1011 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ PA+ +TD N+F + F ++ Sbjct: 1 MAKNSSFVHLHNHTEFSMLDGMAKVDLLADEVIRQGMPAVGMTDHGNMFGSNAFYRRMVE 60 Query: 65 AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AG++PIIG + + + + N K G TP + +L A G + L Sbjct: 61 AGVKPIIGIEAYMAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMLAENATGLRNLF 119 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +L + Q + R+ + E +G+I TG SG + A + Sbjct: 120 KLSTLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFDAALEAAAM 178 Query: 174 FKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++ ++G D ++ L H + +R ++++ ELP + TN+ ++ E AH+ + Sbjct: 179 WQDIYGKDNYFLELMDHGLHIERRVRDDLLKIGEILELPPLVTNDCHYVLESQAPAHEAM 238 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIF-SDLPEALENTVEIARRC---SFILQ 286 + V + +DR + +Y+K+ ++M I+ S +P+ +NT+ IA R S + + Sbjct: 239 LCVQTGKTMMDQDRFKFDGTGYYIKSAAQMREIWDSTVPDGCDNTLWIAERVGDYSELWE 298 Query: 287 VHAPILPRFIEKECDDIQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H P D + E LR + + GLE R + Q+Y R ++E+ Sbjct: 299 EH----PHDRMPVADVPEGETPTTWLRKEVMRGLEERFPGSEVP-----QEYIDRANYEV 349 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI + YFLIVA+ I+ A++ I VGPGRGS AG++ AYALTIT+IDP+ LLFE Sbjct: 350 DVIDMKGYPSYFLIVAEIIKHAREIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLFE 409 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R S PD DIDF RR E+I Y ++G +++AQ+ITFG+++ K A++D + Sbjct: 410 RFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKIAQVITFGTVKTKQAIKDAAKVW 469 Query: 466 --QMPYSQVDRL-CKLIPNDPAHPVSLQAIADDSRFREARLA--------DPSVDRLLEI 514 Q + DR+ L P A + L I D R A DP V ++ E Sbjct: 470 FGQPGFQMADRINSALPPAIMAKDIPLVGITDPEHERYPEAAEVRTLIETDPDVAKIYET 529 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEG+ R A HA +++ PL + +PM++ +T ++ E GL+K DFL Sbjct: 530 ARGLEGVVRQAGVHACAVIMASVPLMEHIPMWKRPADGALITGWDYPACEAIGLLKMDFL 589 Query: 575 GLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ ++ + RGV +DL + D+ Y LL+ TLG+FQL+S GM+ L+ Sbjct: 590 GLRNLTVIGDAMANIEKNRGVTIDLETLDIDNAAVYELLSRGDTLGVFQLDSGGMQDLLK 649 Query: 634 GMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---LKETQG 687 M+P DI+A ++LYRPGP + Y +RKNG++ I IHP L +P+ L ET G Sbjct: 650 RMKPTGFNDIVASLALYRPGPMGVKAHEAYADRKNGRKPITPIHPELEEPLREILDETYG 709 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + ++ +F G NG SK Sbjct: 710 LIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAEEYSKFSEGMFSNGFSKDAVD 769 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++ + FA Y FNKSHAA YA++SY TA++K +Y E++AA +T D +K + Sbjct: 770 ALWGTIEPFASYAFNKSHAAGYALVSYWTAYLKANYTAEYMAALLTSVGDKKDKSAIYLA 829 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866 D R I ++ P +N +F + I Y LAA++ VG I E K F S Sbjct: 830 DCRHLGISVLQPDINESEENFMAVGSDIRYGLAAVRNVGVEVVESIKETRRTKGAFTSFS 889 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEKNRTNK 922 D+ +++ N+R+ ESL+ AGA D G+ R L+ ++D++ + +K + + Sbjct: 890 DYLDKIELLACNKRITESLIKAGAFDSLGHPRKGLMLVQEDAVDSVLTTKKAADKGQFDL 949 Query: 923 HENIFAHEKGTFSDKITLEKFSVE-NSSVRFENEQRVLGFYFSGHPLDVYK 972 + FA E G T++ E + E+ +LG Y SGHPLD Y+ Sbjct: 950 FAS-FAGEDGAEQAVFTIDVPDDEWDRKHTLALEREMLGLYVSGHPLDGYE 999 >gi|307289993|ref|ZP_07569918.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0411] gi|306498951|gb|EFM68444.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0411] Length = 1109 Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust. Identities = 333/1036 (32%), Positives = 541/1036 (52%), Gaps = 64/1036 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + +G + ++L +GYQ+L++L S + +G + Sbjct: 62 IIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQLMQLSSSK-MTTEGPFYL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQ 187 S L + L +T + G + + FF + Q F++L + D + ++ Sbjct: 110 AEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH----AFQQLASYFDPQSLFVE 160 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST---VVSQKD 244 ++ R + +LP VA L++E+ A VL ++ + + SQ Sbjct: 161 HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTKEEGFAVTVLESIKENNQLNITSQT- 219 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 P + +YL+ + + E ++NT+++A C + +H +LP F Sbjct: 220 -PEIEGLNYLREAETTMEQILQIAGAEVVQNTIQLAGNCRVDIPLHQKLLPHF----PVL 274 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + LR + L R+ + + Y++RL+ EL +I M F YFLIV D Sbjct: 275 ANQTAGSYLRTLCLEKLPERVP-------HLNEVYQKRLEKELTIIHNMGFDDYFLIVWD 327 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 + + N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D Sbjct: 328 VMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDI 387 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 +RR+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 388 PDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNK 447 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R +E P+ L + + +LEGL RH STHAAG+VI D L L Sbjct: 448 LKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNL 506 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601 VP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ I Sbjct: 507 VPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQI 565 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ Sbjct: 566 PLNDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVF 625 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK Sbjct: 626 IRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKK 685 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K+ +D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K Sbjct: 686 KDVLDEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKV 745 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLA 840 HYP F A + N KIK++ +AR+ I+ PS+N F + +I + + Sbjct: 746 HYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFS 805 Query: 841 AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++KG+ ++I+ E + P+ + ++F R+D K L +E L+ GA D +R Sbjct: 806 SLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRR 865 Query: 900 QLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 QL L+ NIQ + + E + E E+ + R E E++ Sbjct: 866 QLAVGLESNIQSI--LLSGGSMDLLETLKPKE----------EEIADYPLEERLEQEEQY 913 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGW 1017 LG Y SGHP + +K K + + V + N +L V + + +T+KG ++ + Sbjct: 914 LGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKLLIYVKNIRTIRTKKGEQMAF 969 Query: 1018 VTFSEPAKEYEANFFP 1033 V + FP Sbjct: 970 VDGDDTTGSISLTLFP 985 >gi|259046884|ref|ZP_05737285.1| DNA polymerase III, alpha subunit [Granulicatella adiacens ATCC 49175] gi|259036507|gb|EEW37762.1| DNA polymerase III, alpha subunit [Granulicatella adiacens ATCC 49175] Length = 1117 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 348/1052 (33%), Positives = 538/1052 (51%), Gaps = 92/1052 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQV SSYSLL+ + LN + +A+TD L A+EF ++ GIQPI Sbjct: 3 YTTLQVFSSYSLLKSTIRLNEYVATGKLLGYKQLALTDDGVLHGAVEFYERCIQNGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC +I + + +V+ ++GY+ L++L + L QG + Sbjct: 63 LGCTFEIAWKSDASKKEM----------LVVYAKGSKGYESLLKLST---LYQQGLTWTK 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-NSSQVAEKRLLTFKKLF-GDRLYVNLQR 188 W+ + I+L P D + NS E L K+ + G + + + R Sbjct: 110 EMTEWIATHSEDVKIVLP-----PTDSEWVAANSKGRLEAVLKAVKEEYAGVEIAIGITR 164 Query: 189 H----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--Q 242 +++ RE + LP VA + S +L+ DY VL A+ +S Q Sbjct: 165 EMVERSEFEKMREG----IEAAGVLP-VAFSVSRYLNATDYFPWKVLQAIRLGGTLSFTQ 219 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI--LQVHAPI----LPRFI 296 +D T L + M +F + +E V ++ F L V P+ LP+F Sbjct: 220 ED---ATGSESLPEATSMAKVF----QVVEGGVLLSNLEKFTKDLVVEIPLRDTMLPKFP 272 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSG 355 + K A L + A+ + G Y RL EL VI M F Sbjct: 273 VPD-------------GKTSAQFLYELCEAAMLEMGVTTPIYVNRLKEELAVIHEMGFDD 319 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV D ++ A++ I G GRGS AGS+ AY L IT +DP+R+ LLFERFLN +R +M Sbjct: 320 YFLIVWDIMRHAREKGIQTGAGRGSAAGSLVAYLLHITGVDPIRYHLLFERFLNRERYTM 379 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DF D+R++++ Y+ +KYG++ VAQI+TFG+L AK LRDV + + + Sbjct: 380 PDIDLDFPDDKREDILAYIVSKYGNQNVAQIVTFGTLGAKQVLRDVCKVFG---ENIITV 436 Query: 476 CKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 K N V+L Q ++ FRE + +L ++++ LEGL RH+S HAAG+V+ Sbjct: 437 QKFSNNIAQGKVTLEQTYKENKAFREHIESSERNRKLYQVAKALEGLPRHSSVHAAGVVL 496 Query: 535 GDRPLSQLVP-MYRDV-------RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 L++ VP M RD +D +TQ+ M+ +EK GL+K D LGL LTLL K++ Sbjct: 497 SQDALTKTVPLMKRDKGYSASLQEADWMLTQYAMQAVEKVGLLKMDLLGLSNLTLLHKAI 556 Query: 587 DFLAQRGVK--VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 Q+ K +D++ IP DD T+ L T GIFQ ES G+R+ L+ M+P ED++ Sbjct: 557 Q-QTQKITKKELDITKIPLDDPRTFELFQKAQTNGIFQFESDGIRRVLKEMKPTEFEDLV 615 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 A++SLYRPGP++ I + NRK G E + H + +L+ T G+++YQEQVMQ A ++G Sbjct: 616 AVLSLYRPGPMEQISHFINRKKGTEIVQYPHASLQRILEPTYGILVYQEQVMQAASEMAG 675 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 +SL EAD+LRRA+GKK E + QKE+F+ GA G + A +++ + KFA+YGFNKS Sbjct: 676 FSLGEADILRRAIGKKNSETIAAQKEKFVQGAVSKGYKQEDAETVYDYIEKFANYGFNKS 735 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 HA AYA++SYQ A++K +YP F A K++ + +ARQ I+I+PPS+N Sbjct: 736 HAVAYAMLSYQLAYLKANYPTAFFTALFQNASAKSSKLQDYLVEARQLGIKILPPSINNS 795 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883 DF D+ + L +IKG+ I++ + PF +DF R+ ++ +L Sbjct: 796 FADFVANDSGVIVGLNSIKGIRRDFVESIVKNRYEYGPFKGFQDFAYRMGAQYTKEPLLV 855 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 +L+ AGA D FG +R L ++D + K ++ N + D + + Sbjct: 856 ALINAGAFDEFGETRATLKANVDAVAKSVKFHGLNL-------------SLEDDLEVAFT 902 Query: 944 SVENSSV--RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 VE + R E VLGF S HP Y P+++ I+ + + +R ++ Sbjct: 903 HVEEEPLLQRIGEEIEVLGFSISPHPSSKYDPLMKSGWIQAIQ---SVFEEGYMRFVGLI 959 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V ++ TRKG ++ +VT + + + FP Sbjct: 960 VDIRKISTRKGEKMAYVTLQDASGMIDVVVFP 991 >gi|317496209|ref|ZP_07954569.1| DNA polymerase III [Gemella moribillum M424] gi|316913784|gb|EFV35270.1| DNA polymerase III [Gemella moribillum M424] Length = 1092 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 319/982 (32%), Positives = 537/982 (54%), Gaps = 83/982 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 ++ +LQVHS+Y LL + + +K+ +D Q ++ I D N ++ A++ ++A GI Sbjct: 2 AYYNLQVHSAYDLLNSTIKYKELFEKLKSDNQDSVVIVDPN-MYGAIKAYKEAKKTGINL 60 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G ++ + + N +L + +L EL +R L++ + S+ Sbjct: 61 ISGLEVKLGYGISFLTFN-------------ILCKNERMFHKLFELSTR--FLNEEELSL 105 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 L+ +++ + ++++T I+ ++ +++L+ + FG N + Sbjct: 106 EAFLAEIKDFKDDFVLIVTSELRDSIEFSYL-------QEQLIGYDFYFGFNEKFNYSIY 158 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 YD +V T S +L+++ Y+ V A+ +T ++ ++ Sbjct: 159 TYYDN----------------IVYTKPSYYLNKDHYQQVVVARAIRDNTKLNIRELTTTI 202 Query: 250 PDHYLKNRSEMVSIF-SD-------LPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 DH++++ + + SD L ++L+N I +C + L+ LP++I E + Sbjct: 203 GDHFVRSVQDFSLLLESDNEEYIFMLQKSLDNQQRIIDKCHYELEFSGYHLPKYIYGEHE 262 Query: 302 DI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D+ + ++ LR G + +L + K Y+A Y++R ++EL +I M F+ YFLI Sbjct: 263 DVFAKMSAKDYLRYLVQKGAKEKL----VGKDYYA--YKKRYEYELKIIDDMGFNDYFLI 316 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DF+++AK N I VG GRGS AGS+ Y L IT+ DPL ++LLFERFLN +R+SMPD D Sbjct: 317 VYDFVKYAKDNGILVGAGRGSAAGSLVCYLLNITEADPLEYNLLFERFLNKERISMPDID 376 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDF RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+ R LQ +++ D K I Sbjct: 377 IDFQDTRRDEVIKYVEGKYGEDKVAQIITFTTFQSKSAARETARILQ--FNEED--LKFI 432 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGD-R 537 ++ + +L + S + ++R I+ LE L ++ S HAAGIVI D + Sbjct: 433 SSNVSSTRTLTECYEVSENLRNFVNKSDLNRRWFSIALSLEELPKNPSVHAAGIVISDDK 492 Query: 538 PLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 PL + P+ S++ +TQ+ M +E GL+K DFLG++ LT++ ++ + + Sbjct: 493 PLIKHTPL---AASNVTKYLTQWTMDDVESVGLLKIDFLGIRYLTMVSNIVEQIKKDNPS 549 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 D++ I + D + Y+L T T GIFQ ESSGM++ L ++P DI+A+ +LYRPGP+ Sbjct: 550 FDITKINYADQKVYNLFTQGRTEGIFQFESSGMKEKLRLLRPTEFNDIVAMNALYRPGPM 609 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I Y RK+G+EK+V HP ++ +L++T GVI+YQEQ+M IA + SL+EAD +RR Sbjct: 610 AQIETYVRRKHGEEKVVYPHPHLEKILRDTYGVIVYQEQIMLIAVNFAHMSLNEADNMRR 669 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 A+ KK KE+++ FI + G IA +F+L+ FA+YGFNKSHA Y++++Y+ Sbjct: 670 AVSKKKKEDLEYYGRIFIEKSVAAGYDLNIAKKLFDLIVTFANYGFNKSHAVVYSMLAYR 729 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 A++K +Y F+ A + + + +KI ++ Q+ I + P VN DF V I Sbjct: 730 LAYLKVYYTKYFMTALLNNVISSEKKINEYKQELNNLGITLAKPDVNVSLSDFSVYKQDI 789 Query: 836 YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 ++L AIK VG ++ I++ + + ++DF R++ KK++ + +SLV AGALD F Sbjct: 790 VFALTAIKNVGYRSSYEIVQDRLNFGKYQDIDDFLKRMN-KKVDYQAAQSLVKAGALDTF 848 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNR--TNKHENIFAHEKGTFSDKITLEKFSVENSSV-- 950 GY+R L+ +K + E +R N + E G +TL+ VE+ + Sbjct: 849 GYNRATLM------KKVKDYYEDDRKYINNVRVALSAESG-----LTLKVEEVEDYPIAE 897 Query: 951 RFENEQRVLGFYFSGHPLDVYK 972 + + E+ V G YF HP+ V K Sbjct: 898 KIQMEKEVTGTYFLKHPVQVEK 919 >gi|298528510|ref|ZP_07015914.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298512162|gb|EFI36064.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 775 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 293/785 (37%), Positives = 443/785 (56%), Gaps = 32/785 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL H+ YSL EG + + ++ + + PA++ITD+ NLF A++ KA GI+PI Sbjct: 4 FCHLHCHTEYSLFEGCIRIEDLCSRAVEYKMPAVSITDSGNLFGAMKLYLKAREYGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129 IGC++++ + K+T++ + +VLL GY L+ LVS ++ QG Sbjct: 64 IGCEVNLSPE---KITDRDSFNY----HLVLLAMDLHGYHNLVRLVSAGWM--QGFYYKP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPID---RAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ LQ + GLI L+ G + R F+ + A ++ + +F DR Y+ L Sbjct: 115 RVDKDMLQTY-SNGLIALSACMEGEVQYLLRTKGFDHALEAARQ---YASIFPDRFYLEL 170 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 + D+ ++++++ LP+VATN+ +L+ +D EA+ L + + + + Sbjct: 171 EASGLKDQAEVNGRLMEMSEKTGLPMVATNDCRYLAPQDAEAYAALRCIQKNERLDHHNL 230 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + Y K+ EM FS P ALEN +I +C L+ LP++ D + K Sbjct: 231 N--SRELYFKSPEEMEKEFSHCPTALENVQKIIEQCGLDLEYPKRHLPKYTPSAEDTLDK 288 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E L + GLE +LA + +Y RLD EL VI S YFL+V D++ Sbjct: 289 E----LVALSEKGLEEKLAN--LPYEVDRDEYFTRLDKELKVICEQGESWYFLVVHDYVS 342 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK I VGPGRG GS+TAYAL IT +DP+R L FE+F N + + D D+DFC + Sbjct: 343 WAKSRGIVVGPGRGFAPGSMTAYALGITGVDPIRHRLYFEKFFNT-KTGLKDIDVDFCHE 401 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EV Y++ KYG F + +A+ LRDVG+ + QV+++ LIP Sbjct: 402 RREEVFEYLREKYGQANAVYPSVFVASKARVVLRDVGQVMGFSLDQVEQITSLIPEKIGI 461 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 VS +A+ + R + + R L+I ++L+ L RH S HAAGIVI + L +P+ Sbjct: 462 TVS-KALEMEPALRNLMNDNEEMQRYLDICKRLDRLVRHVSIHAAGIVISNEKLQSYLPL 520 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604 Y D + V+Q++ + + G IKFDFLGLK L+L+ ++L + +V D+ +P D Sbjct: 521 YSDQNKAI-VSQYDWDDLRRLGFIKFDFLGLKYLSLISRTLALIKVNKKQVPDMENLPLD 579 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662 D T+ LL T G+FQLESSGMR L + P C EDIIAL ++YRP + N + + Sbjct: 580 DTLTFDLLDGGLTEGVFQLESSGMRNTLMDLTPTCFEDIIALHAIYRPAFLQNGIDKDFI 639 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G + HP ++P+L ET G+IIYQEQ+M+IAQ L+GYSL E D LRR +GKK Sbjct: 640 KRKHGLVSVEYPHPDLEPILNETHGLIIYQEQLMEIAQTLAGYSLEEGDTLRRVLGKKEA 699 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 M +Q+E+FI A G+ + A ++FEL+ +FA Y F+KSH+ AY++I+YQTA++K H Sbjct: 700 TTMAEQREKFIQKARDKGLDQLTAKHVFELMERFASYTFSKSHSVAYSMIAYQTAYLKAH 759 Query: 783 YPVEF 787 YP EF Sbjct: 760 YPEEF 764 >gi|329768254|ref|ZP_08259755.1| hypothetical protein HMPREF0428_01452 [Gemella haemolysans M341] gi|328837453|gb|EGF87082.1| hypothetical protein HMPREF0428_01452 [Gemella haemolysans M341] Length = 1089 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 326/1047 (31%), Positives = 557/1047 (53%), Gaps = 100/1047 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + +LQVHS+Y LL + ++ K+A D Q ++ I D N ++ A++ +++ AGI I Sbjct: 2 YYNLQVHSAYDLLNSTIKYESLFLKLARDNQRSVVIVDPN-MYGAIKAYKESKRAGINLI 60 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G ++ + N +L + + + +L+E+ ++ ++ + ++ Sbjct: 61 QGLEVSLGYGIGFLKFN-------------ILCKSEKMFYKLLEISTK--FMNGEEWTIE 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 S ++E + ++++ ++ ++ N L+ N + Sbjct: 106 DFSSEMKEYSDDFVLIVVDELRDSMEFSYLNN-------------------LFSNYDFYF 146 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 G++ ES V Y+ +V T S +L++E+Y+ V A+ + ++ ++ ++ Sbjct: 147 GFN---ESFQVS-PYSFYENIVYTKPSYYLNKENYQQVIVSRAIRDNKKLNIQELTIISG 202 Query: 251 DHYLKNRSEMVSIFSDLPEAL--------ENTVEIARRCSFILQVHAPILPRFIEKECDD 302 D +++ + + I + E L EN I +C + L LP+++ E +D Sbjct: 203 DEFVRKQKDFEEILALGDEELQMIFKKSFENQQNIVDKCQYELNFSGYHLPKYVYGEKED 262 Query: 303 I-----QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I KE + L K V G V G Y++R +EL +I M F+ YF Sbjct: 263 IYSKFSSKEYLHFLVQKGVKGKLV---------GKDLYPYKKRYSYELKIIDEMGFNDYF 313 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DF+++AK N I VG GRGS AGS+ Y L IT+ DPL ++LLFERFLN +R+SMPD Sbjct: 314 LIVYDFVKYAKDNGILVGAGRGSAAGSLVCYLLDITEADPLEYNLLFERFLNKERISMPD 373 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DIDF RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+ R LQ ++ K Sbjct: 374 IDIDFQDTRRDEVIKYVEEKYGQDKVAQIITFTTFQSKSAARESARILQFD----EQTLK 429 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIGD 536 I ++ + +L+ + S A + +++ R I+ LE L ++ S HAAGIVI D Sbjct: 430 FISSNISSTRTLKECYEMSEELRAFINQSNINKRWFSIALSLENLPKNPSVHAAGIVISD 489 Query: 537 -RPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 +PL P+ S++ +TQ+ M +E GL+K DFLG++ LT++ ++ + + Sbjct: 490 DKPLVNYAPL---AESNMTKYLTQWTMDDVESVGLLKIDFLGIRYLTMVSSVVEEVKKEN 546 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 D++ I + D + Y L T GIFQ ESSGM++ L ++P DI+A+ +LYRPG Sbjct: 547 PTFDITKINYQDPKVYELFAKGKTEGIFQFESSGMKEKLNLLKPTEFNDIVAMNALYRPG 606 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+ I VY RKN +E++V HP ++ +LK+T GVI+YQEQ+M IA + SL+EAD + Sbjct: 607 PMAQIEVYVRRKNKEEQVVYPHPHLEKILKDTYGVIVYQEQIMLIAVNFAHMSLNEADNM 666 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRA+ KK KE+++ F+ + G +A +F+L+ FA+YGFNKSHA Y++++ Sbjct: 667 RRAVSKKKKEDLEYYGRIFVEKSVAVGYDLQVAKKLFDLIVTFANYGFNKSHAVVYSMLA 726 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y+ A++K +Y F+ A + + + +KI ++ Q+ I ++ P VN +F V N Sbjct: 727 YRLAYLKVYYTKYFMTALLNNVISSEKKINEYKQELNNLGINLVKPDVNRSLSNFSVYKN 786 Query: 834 RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I ++L AIK VG + I++ + + ++DF R++ KK++ + SLV AGALD Sbjct: 787 DIVFALTAIKNVGYRSGYEIVQDRINFGRYLDIDDFLKRMN-KKVDYQAAVSLVKAGALD 845 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNR--TNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 FGY+R L++ +D+ + NR N + E G +TL+ VE+ S+ Sbjct: 846 TFGYNRATLMKKVDD------YYSDNRQYINNVRVALSAESG-----LTLKVEEVEDYSI 894 Query: 951 --RFENEQRVLGFYFSGHPLDVYKPILRKMGIK--GYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ V G YF HP+ V K + ++ G E S + + ++++++ Sbjct: 895 TEKIQMEKEVTGTYFLKHPVQVEKEKYSYLPLQYIGAELSDSYVE---------IITRKE 945 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 KT+ G + ++T ++ +Y+ FP Sbjct: 946 IKTKNGDYMAFLTVNDGKNDYDVTVFP 972 >gi|298500380|ref|ZP_07010185.1| DNA polymerase III subunit alpha [Vibrio cholerae MAK 757] gi|297541073|gb|EFH77127.1| DNA polymerase III subunit alpha [Vibrio cholerae MAK 757] Length = 637 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 268/651 (41%), Positives = 389/651 (59%), Gaps = 27/651 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A G++ Sbjct: 4 PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG T Q + + + LL GY+ L L+S+ YL + Sbjct: 64 PIIGADF----------TLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R Sbjct: 114 PVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + + +A ++LP+VATN +F++EE +EAH++ +A+ + RP+ Sbjct: 173 TGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ LP F Sbjct: 233 NYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-----GMA 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV +F Sbjct: 288 IEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + IA+ + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 468 GMTLEKAFIAEPA-LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K V + Sbjct: 527 PIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L Sbjct: 587 EAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVAL 637 >gi|282897054|ref|ZP_06305056.1| DNA polymerase III, alpha subunit [Raphidiopsis brookii D9] gi|281197706|gb|EFA72600.1| DNA polymerase III, alpha subunit [Raphidiopsis brookii D9] Length = 882 Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust. Identities = 302/821 (36%), Positives = 463/821 (56%), Gaps = 81/821 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GI 67 SFV L +HS YSLL+GA + ++++ A ++A+TD ++ A+E K C + G Sbjct: 2 SFVPLHLHSDYSLLDGASQIPELVEQAIALGMNSLALTDHGVMYGAIELI-KICRSKPGF 60 Query: 68 QPIIGCQL-----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 +PIIG ++ DI+ Q+ +Q V+L +GY+ L++L + +L Sbjct: 61 KPIIGNEMYIINGDIEKQERRPRYHQ-----------VVLAKNTKGYKNLVKLTTISHLK 109 Query: 123 D-QGKQSV-RICLSW-LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 QGK R C++ L E EGLI+ + +G I +A + A K +K +FG Sbjct: 110 GTQGKGIFSRPCINKNLLEEHKEGLIVTSACLAGEIPQAVLGGKLETARKVARWYKGVFG 169 Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y+ +Q H DR ++V++A + +ATN+S ++S D EAHD L+ + Sbjct: 170 EDFYLEIQDHGSQEDRIVNVELVKIARELGIKFIATNDSHYISCFDVEAHDALLCIQTGK 229 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSD------LPEALENTVEIARRCSF--ILQVHAP 290 +++ R R + YLK+ EM +F D + EA+ T E+A + I+ Sbjct: 230 LIADDKRMRYSGTEYLKSTQEMQLLFRDHLTDDVIAEAIATTTEVAEKVEVYNIMDEPKI 289 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVI 348 P D EE A GL RL + K + D Y++RL++EL +I Sbjct: 290 PTPPIPTGHTPDTYTEE------VAWQGLLKRLNR----KSRNEVDTLYKERLEYELKMI 339 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M FS YFL+V D+I++A+ +NIPVGPGRGS AGS+ AYA+ IT+IDP+ LLFERFL Sbjct: 340 EQMGFSSYFLVVWDYIKFARDHNIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFL 399 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R SMPD D DFC ++RD+VI YV KYG ++VAQIITF L +KA L+DV R L +P Sbjct: 400 NPERKSMPDIDTDFCIEKRDQVISYVTEKYGADKVAQIITFNRLTSKAVLKDVARVLDIP 459 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGLYRH 524 Y + D++ K+IP P L+ + D F+ + V R ++++ ++EG + Sbjct: 460 YGEADKMAKMIPVVRGKPTKLKVMISDETPEPEFKAKYDKEQHVRRWIDMAMRIEGTNKT 519 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HAAG+VI PL ++VP+ ++ + +TQ+ M+ +E GL+K DF G + K Sbjct: 520 FGVHAAGVVISSEPLDEIVPLQKNNDGSV-ITQYFMEDLESLGLLKMDFFGSEKSDPNSK 578 Query: 585 SLDFLAQ-RGVKVD-------------------LSLIPFDDHETYHLLTTKGTLGIFQLE 624 ++D + Q RG +D S +P D + Y LL + G+FQLE Sbjct: 579 TIDLIEQNRGYTIDPDDITRQERKAQKILAKGEYSTLPKDVAQAYSLLESGDLEGVFQLE 638 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPML 682 SSGM+Q + ++P IEDI ++++LYRPGP+D ++ + NRK+G+E I ++ P+L Sbjct: 639 SSGMKQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFINRKHGRESIDYESQILQPIL 698 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 ET G+++YQEQ+M+IAQ ++GYSL +AD+LRRAMGKK EM KQ+E+FI GA+KNG+ Sbjct: 699 NETYGIMVYQEQIMKIAQDMAGYSLGQADLLRRAMGKKKVAEMQKQQEKFIDGATKNGVK 758 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 K +A +F + KFA+Y +SY+T + Y Sbjct: 759 KQVAEQLFADMLKFAEY-----------CLSYETEVLTLEY 788 >gi|315639541|ref|ZP_07894683.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus italicus DSM 15952] gi|315484691|gb|EFU75145.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus italicus DSM 15952] Length = 1101 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 282/794 (35%), Positives = 443/794 (55%), Gaps = 49/794 (6%) Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313 L+ EM F PEALE ++ C L +H +LP++ + + + L Sbjct: 219 LRPAEEMDQAFQKCPEALEELAKLVVLCQLELPLHQVLLPKYPVPNGESAK----DYLAY 274 Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373 GL R IA H Y++RLD+EL +I +M F YFLIV D + +A + NI Sbjct: 275 LCKQGLASR----QIA---HTSTYQRRLDYELRIIHQMGFDDYFLIVWDIMNFAHEQNIV 327 Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433 G GRGS AGS+ +Y L+IT+IDP+ LLFERFLNP+R +MPD D+D +RRD ++ Y Sbjct: 328 TGAGRGSAAGSLVSYLLSITEIDPIDADLLFERFLNPERYTMPDIDLDIPDNRRDVILHY 387 Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493 V+ KYG + VAQI TFG++ AK LRDV R + S+++R K IPN + +A Sbjct: 388 VKEKYGADYVAQIATFGTMAAKMVLRDVARTFGLSQSEMNRWSKAIPNQLKITLK-EAYQ 446 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 RE + L +I+ +LEGL RH STHAAG+VI D L +LVP+ + +L Sbjct: 447 TSKSLRELVEMNEKNRLLFQIASQLEGLPRHVSTHAAGVVISDTNLRKLVPL-QAGSGEL 505 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL------SLIPFDDHE 607 +TQF M +E GL+K DFLGL+ L+++ +L +G+ + ++IP +D + Sbjct: 506 YLTQFAMNDVETVGLLKMDFLGLRNLSIIDDTL-----KGIYYQMKQCFTQAMIPKNDKQ 560 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY L T+G+FQ ES+G+R+ L ++P +E++ + +LYRPGP+ I Y RKNG Sbjct: 561 TYELFQRGETVGVFQFESAGIRKVLRDVRPANLEELAVVNALYRPGPMKMIDAYVKRKNG 620 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 EK + + P+L+ T G+++YQEQVMQ+A ++ G+SL EAD+LRRA+ KK + +D+ Sbjct: 621 LEKSTYLDQSLAPILRSTYGIMVYQEQVMQVASMMGGFSLGEADILRRAISKKKRAVLDE 680 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+E+F GA G + IA ++ + +FADYGFN+SHA AY+ I+YQ A++KTHYP+ F Sbjct: 681 QREKFYQGAQTKGYDRKIAEATYQYIERFADYGFNRSHAFAYSEIAYQMAYLKTHYPLPF 740 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846 A + N K++++ +A++ + + PS+N F + + I + LA+IKG+ Sbjct: 741 YRALLQSVQGNASKMREYISEAKRQGVVFLAPSINASYSGFSIESSEGIRFGLASIKGLR 800 Query: 847 TTTARHIMEASADK-PFDSLEDFCSRVDS---KKLNRRVLESLVFAGALDCFGYSRMQLL 902 + ++ ++ PF S++ F R++ K + + +LE LV GA D +R QLL Sbjct: 801 KDFTQAVIRERKERGPFKSMDHFLLRLNQLNPKYIKKEILEPLVEVGAFDTIEPNRKQLL 860 Query: 903 QSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFSVENSSV--RFENEQRVL 959 Q L+ K +N+ F+ + L+ V + ++ + E+ +L Sbjct: 861 QELEG--------------KRQNLAFSGGSMDMLALMPLKTTEVVDFTLPEKLTFEENLL 906 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G Y SGHP+ Y + RK + V G + L + + ++ +T+KG ++ ++ Sbjct: 907 GVYVSGHPIQEYDDLRRKWQTTQLSDLVP---GTTVLLLGYLKNIREIRTKKGEKMAFLD 963 Query: 1020 FSEPAKEYEANFFP 1033 + E FP Sbjct: 964 IMDLGAERSVTLFP 977 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 12/111 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 ++ L S+YSLLE + L + K A+ + D N L +EF Q A I+PI Sbjct: 2 YIPLATKSAYSLLESTIRLPQYVQKAHEYHYEALGLMDHNTLHGTIEFYQLCQKAKIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IG LDI D +T +P + + GYQ+L+EL ++ L Sbjct: 62 IGLLLDISFAD--------ETSYP----FYFVAKSFAGYQQLMELSTKKML 100 >gi|229824039|ref|ZP_04450108.1| hypothetical protein GCWU000282_01343 [Catonella morbi ATCC 51271] gi|229786393|gb|EEP22507.1| hypothetical protein GCWU000282_01343 [Catonella morbi ATCC 51271] Length = 1116 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 316/964 (32%), Positives = 511/964 (53%), Gaps = 50/964 (5%) Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75 VHS+ SLL L++ + ++ + + D ++L AL+F + AAG++ +IG Sbjct: 5 VHSANSLLASTLTIPSYVEAAKERGYQILGLADVHSLQGALDFYNRCQAAGLKAMIGA-- 62 Query: 76 DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 I + LK T P +V ++ A GY LI L+ R L S + Sbjct: 63 TIKLPGALKQTQ-------VYPFLVYALNQA-GYYELIGLIRR---LSHQPLSPGAIWDY 111 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDR 194 L + L ++ G + +++ + Q A L +++FG +Y+ + Y+ Sbjct: 112 LTQ-SCHNLFYISCGHASEVEQTLIHSGDQEASLVLERLEQVFGPGNVYLGVAAF-PYNP 169 Query: 195 YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 + A +++PLV L++ D + VL A+ + + + R + HY+ Sbjct: 170 VEGEALKAFAKAYQVPLVVGQGVSTLNQGDAFSLKVLEAIGANETLDVELRA-MQGVHYV 228 Query: 255 KNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 N +++ + + L + L N+ ++A R L + LP+F + LR Sbjct: 229 YNWADLEAQYVRLGLADCLTNSRQLADRMQVSLPQNQAFLPKFPTPD----HLPASQFLR 284 Query: 313 NKAVAGLE-VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 + + LE +R A A+ Y+QRLD+EL VI M FS YFLIV D I + + + Sbjct: 285 DLTQSALEDLRPADLAV--------YQQRLDYELEVIDSMGFSDYFLIVWDIIVYCQSHA 336 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R +MPD D+D ++R +V+ Sbjct: 337 IRVGPGRGSAAGSLVSYLLGITRVDPIQYNLLFERFLNPERYNMPDIDMDIPDNKRQQVL 396 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL-Q 490 YV +YG E+VAQI T G+ A+AA+RD R L + + IP + +SL Q Sbjct: 397 HYVVERYGQEQVAQIATLGTFGARAAMRDTLRVLGADSETLRVWARAIPKE--LDISLPQ 454 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A + R+ + +L +++Q +EGL RH STHAA +VI D+ L Q++P+ R Sbjct: 455 AYQKSAALRQLVSQSETNQQLFQVAQTIEGLPRHISTHAAAVVIHDQALDQVIPVVE--R 512 Query: 551 SDLPV-TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 + P+ TQF M +EK GL+K DFLGL+ L LL + + + D+ I +D +T Sbjct: 513 PNQPLMTQFTMYDVEKVGLLKMDFLGLRNLNLLDTIIKQVQKSQADFDIEAISMEDAQTL 572 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T G+FQ ES G++Q L +QP+ EDI+A+ +L+RPGP+ I Y R++GKE Sbjct: 573 ALFRAADTNGVFQFESDGIKQVLRKLQPERFEDIVAVNALFRPGPMKQIDHYVARRHGKE 632 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +IHP+++ +L T G+I+YQEQVMQ+ Q ++G+SL +AD+LRRAMGKK + M +++ Sbjct: 633 SYQAIHPILEEILAPTYGIIVYQEQVMQVCQRMAGFSLGQADLLRRAMGKKQADVMARER 692 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 E FI GA + GI IA ++ + +FA YGFN+SHA Y+ +++Q A++K HYP+ F Sbjct: 693 EHFIRGAREQGIEPEIASATYDYIYEFASYGFNRSHAVVYSTLAFQLAYLKVHYPLAFYQ 752 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A + + N + + +A++ ++ ++N + F V ++ L+AI+ + Sbjct: 753 ALLNMGSSNQTTMADYILEAKRHTGPLLGLNLNESQIGFSVSGQQLQVGLSAIRTLRHDF 812 Query: 850 ARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 HI+E P+ L F R+ K L LESL+ GA D G +R LL++LD + Sbjct: 813 VSHIVEDRQLLGPYTGLLHFMQRLPKKWLKHEWLESLISVGAFDYTGMNRPTLLKNLDKL 872 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 + + N + +F + +E N S + + E +LGF GHP+ Sbjct: 873 MQSVTFSGGNLS-----LFPELEP------RIEWVEDWNPSQKRDKEVEILGFSLEGHPV 921 Query: 969 DVYK 972 Y+ Sbjct: 922 ATYQ 925 >gi|255325317|ref|ZP_05366423.1| DNA polymerase III subunit alpha [Corynebacterium tuberculostearicum SK141] gi|255297882|gb|EET77193.1| DNA polymerase III subunit alpha [Corynebacterium tuberculostearicum SK141] Length = 1190 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 323/1020 (31%), Positives = 539/1020 (52%), Gaps = 63/1020 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ + PA+ +TD N++ + F ++ Sbjct: 1 MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSDAFYRRMTG 60 Query: 65 AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AG++PIIG + + + + N K G TP + ++ A G + L Sbjct: 61 AGVKPIIGIEAYMAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMIAENATGLRNLF 119 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R+ + E +G+I TG SG + A + Sbjct: 120 TLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 178 Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ ++G D ++ L H G D R R+ ++++ +LP + TN+ ++ E AH+ Sbjct: 179 WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPAHE 236 Query: 230 VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287 ++ V DR + +Y+K+ ++M + D+ P+ +NT+ IA R +Q Sbjct: 237 AMLCVQTGKTFMDPDRFKFGGTGYYIKSAAQMRETWDDMIPDGCDNTLWIAER----VQD 292 Query: 288 HAPILPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 + I E + L ++ + GL+ R + ++Y +R + Sbjct: 293 YGEIWEEHTHDRMPIADVPEGHTPTSWLTHEVMEGLQKRFPGQDVP-----EEYIERAKY 347 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDPL LL Sbjct: 348 EISVIEMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLL 407 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R S PD DIDF RR E+I Y ++G ++VAQ+ITFG+++ K A++D + Sbjct: 408 FERFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAK 467 Query: 464 AL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIADDSRFREARLA--------DPSVDRLL 512 Q + DR+ L P A + L+ I D R + A DP V ++ Sbjct: 468 VHFGQPGFQMADRINGALPPAIMAKDIPLKGITDPDHERYSEAAEVRQMVESDPDVKKIY 527 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + ++ LEG+ R A HA +++ L +PM++ +T ++ E GL+K D Sbjct: 528 DTARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMD 587 Query: 573 FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLESSGM 628 FLGL+ LT++ +++ + + RG ++ L + DD + Y LL+ TLG+FQL+S GM Sbjct: 588 FLGLRNLTVIGDAIENIKRNRGEEIHLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGM 647 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE-- 684 ++ L+ M+P +DI+A ++LYRPGP ++ Y +RKNG+++I IHP ++ LKE Sbjct: 648 QELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEIL 707 Query: 685 --TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T G+I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F G +NG S Sbjct: 708 DETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYS 767 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 K+ ++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K Sbjct: 768 KSAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKS 827 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861 + D R I+++PPSVN DF+ I + + AI+ VG+ I+++ DK Sbjct: 828 AIYLSDCRHLGIKVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIKSRHDKGA 887 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEK 917 F S D+ +++ +RV E+L+ AGA D + R L+ ++D +Q + +K Sbjct: 888 FTSFSDYLDKIELAACTKRVTEALIKAGAFDDLNHPRKGLMLIHEDAVDAVQTTKKAADK 947 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPIL 975 + + I E S+ L+ +N + E E+ +LG Y SGHPLD ++ L Sbjct: 948 GQFDLFAGIGGGEDDAASNAFALD-IPEDNWDRKHELALEREMLGLYVSGHPLDGFEEAL 1006 >gi|311741557|ref|ZP_07715381.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium pseudogenitalium ATCC 33035] gi|311303727|gb|EFQ79806.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium pseudogenitalium ATCC 33035] Length = 1194 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 323/1020 (31%), Positives = 539/1020 (52%), Gaps = 63/1020 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ + PA+ +TD N++ + F ++ Sbjct: 5 MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSDAFYRRMTG 64 Query: 65 AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AG++PIIG + + + + N K G TP + ++ A G + L Sbjct: 65 AGVKPIIGIEAYMAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMIAENATGLRNLF 123 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R+ + E +G+I TG SG + A + Sbjct: 124 TLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 182 Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ ++G D ++ L H G D R R+ ++++ +LP + TN+ ++ E AH+ Sbjct: 183 WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPAHE 240 Query: 230 VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287 ++ V DR + +Y+K+ ++M + D+ P+ +NT+ IA R +Q Sbjct: 241 AMLCVQTGKTFMDPDRFKFGGTGYYIKSAAQMRETWDDMIPDGCDNTLWIAER----VQD 296 Query: 288 HAPILPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 + I E + L ++ + GL+ R + ++Y +R + Sbjct: 297 YGEIWEEHTHDRMPIADVPEGHTPTSWLTHEVMEGLQKRFPGQDVP-----EEYIERAKY 351 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDPL LL Sbjct: 352 EISVIEMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLL 411 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R S PD DIDF RR E+I Y ++G ++VAQ+ITFG+++ K A++D + Sbjct: 412 FERFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAK 471 Query: 464 AL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIADDSRFREARLA--------DPSVDRLL 512 Q + DR+ L P A + L+ I D R + A DP V ++ Sbjct: 472 VHFGQPGFQMADRINGALPPAIMAKDIPLKGITDPDHERYSEAAEVRQMVESDPDVKKIY 531 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + ++ LEG+ R A HA +++ L +PM++ +T ++ E GL+K D Sbjct: 532 DTARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMD 591 Query: 573 FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLESSGM 628 FLGL+ LT++ +++ + + RG ++ L + DD + Y LL+ TLG+FQL+S GM Sbjct: 592 FLGLRNLTVIGDAIENIKRNRGEEIHLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGM 651 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE-- 684 ++ L+ M+P +DI+A ++LYRPGP ++ Y +RKNG+++I IHP ++ LKE Sbjct: 652 QELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEIL 711 Query: 685 --TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T G+I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F G +NG S Sbjct: 712 DETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYS 771 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 K+ ++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K Sbjct: 772 KSAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKS 831 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861 + D R I+++PPSVN DF+ I + + AI+ VG+ I+++ DK Sbjct: 832 AIYLSDCRHLGIKVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIKSRHDKGA 891 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEK 917 F S D+ +++ +RV E+L+ AGA D + R L+ ++D +Q + +K Sbjct: 892 FTSFSDYLDKIELAACTKRVTEALIKAGAFDDLNHPRKGLMLIHEDAVDAVQTTKKAADK 951 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPIL 975 + + I E S+ L+ +N + E E+ +LG Y SGHPLD ++ L Sbjct: 952 GQFDLFAGIGGGEDDAASNAFALD-IPEDNWDRKHELALEREMLGLYVSGHPLDGFEEAL 1010 >gi|110005217|emb|CAK99543.1| probable dna polymerase III alpha chain transmembrane protein [Spiroplasma citri] Length = 1014 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 332/997 (33%), Positives = 512/997 (51%), Gaps = 84/997 (8%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL V +SYSLL ++ + ++AI D NN+F EF Q I+PIIG Sbjct: 5 HLNVRTSYSLLSSLITFDKYFTYAMTTGLLSLAICD-NNMFGVYEFHQLCQKNKIKPIIG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + I D P+ ++ L +GY L+E+ S + + + K++V Sbjct: 64 LNVIIWFND---------IPY----NMNLFARNQKGYFNLVEISSLVMINTENKKNVT-- 108 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L EI LT I+ + + + T K L + L + G Sbjct: 109 ---LDEISK----FLTTDVKIIIN----YTTDDYQPELYQTLKSLLKVETDLYLGINNGN 157 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR----V 248 ES LA ++ N + + ED+ A+ V+ + T+ + V Sbjct: 158 LSLLESLQTLLASEQ---IIWNNKVQYFTSEDFIAYKVVDTIKTQTLFKESKMKDLYGWV 214 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF--ILQVHAP---ILPRFIEKECDDI 303 +P Y + + + F N + + F +L+ P +F+++ C Sbjct: 215 SPPSYYQQYFDNIKTFI----TGINVFPLHKGTIFDNLLRYPTPEGQTAQQFLQEIC--- 267 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + L+ K ++ Y +RL++EL VI +M F+ YFLIV D+ Sbjct: 268 ----QTALKQKRISS--------------SKTTYLERLNYELTVINKMGFNDYFLIVWDY 309 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 +++AK+ NI VGPGRGS AGS+ +Y L IT IDP+ ++LLFERFLNP+R S+PD DIDF Sbjct: 310 VRYAKQQNIFVGPGRGSAAGSLVSYLLDITTIDPITYNLLFERFLNPERKSLPDIDIDFE 369 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R+ V+ Y+ KYG E VA IITF ++ K A+RD+ R + + D++ K +P + Sbjct: 370 DDKREMVVEYLFEKYGSEHVAHIITFQTIGMKMAIRDICRIFDIAIEEADKMSKAVPLEY 429 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +AI + F + P V L +K+ GL R THAAG+V+ + L ++ Sbjct: 430 NYHYE-EAINSNPLFEIYQKKYPQVFLHL---KKIIGLPRQTGTHAAGVVLTQQRLQTII 485 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ ++ + + TQ++M ++E+ G++K D LGL+ LT+L +D + Q VK+D++ +P Sbjct: 486 PV-KEGYNGIYQTQYSMNYLEELGILKMDLLGLRNLTILHDVIDNIYQETKVKLDVNTLP 544 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D +TY LL T GIFQLES GM + L M PD +EDI+A SLYRPGP DNI ++ Sbjct: 545 LNDRKTYQLLAQGDTKGIFQLESPGMTKVLVDMAPDQLEDIVATSSLYRPGPQDNIPLFI 604 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK K+ I + +L T G+I+YQEQVM IAQ ++ +SL++ADVLRRAMGKK Sbjct: 605 KRKKKLAKVTYIDERLAEILAPTYGIIVYQEQVMLIAQKVANFSLAKADVLRRAMGKKDA 664 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 M + K FI A KN + IA I+EL+ KFA YGFN+SHA AY+++ YQ A++K + Sbjct: 665 SIMSQMKTEFIEEAVKNHYVEKIAQEIWELIYKFAAYGFNRSHAVAYSLLGYQMAYLKAN 724 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 Y +FLA+ +T + + K + A++ ++ I+PP++N P + DN+I L I Sbjct: 725 YSSQFLASLLTHVIGDEHKTNDYIALAKKNHLTIVPPNINAPYRQYHTIDNQICVPLLII 784 Query: 843 KGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K +G I E + L D R+ K LNR+ E+L F+GALD F +R+ L Sbjct: 785 KQIGFAFFNKIAQEYQTNGMLTDLYDLFIRLYKKGLNRKTYEALCFSGALDVFKMNRITL 844 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 + I Y + ++ N EN+ ++ +E + + E E LGF Sbjct: 845 FNNYQRILTYIELIKTQEEN--ENLVVDFSLAEKPELVIEP---NDEVICLEKEYEFLGF 899 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 Y S HPL K I K GY++ I +N+RL+ Sbjct: 900 YLSNHPL---KYIREK---AGYQDKTTLI--SNLRLS 928 >gi|306836456|ref|ZP_07469431.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium accolens ATCC 49726] gi|304567675|gb|EFM43265.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium accolens ATCC 49726] Length = 1190 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 326/1023 (31%), Positives = 539/1023 (52%), Gaps = 69/1023 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ PA+ +TD N++ + F ++ + Sbjct: 1 MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVKQNMPAVGMTDHGNMYGSDAFYKRMTS 60 Query: 65 AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AG++PIIG + + + + N K G TP + ++ A G + L Sbjct: 61 AGVKPIIGIEAYMAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMIAENATGLRNLF 119 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R+ + E +G+I TG SG + A + Sbjct: 120 TLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 178 Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ ++G D ++ L H G D R R+ ++++ +LP + TN+ ++ E AH+ Sbjct: 179 WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPAHE 236 Query: 230 VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287 ++ V DR + +Y+K+ ++M + DL P+ +NT+ IA R +V Sbjct: 237 AMLCVQTGKTFMDPDRFKFGGTGYYIKSAAQMRDTWDDLIPDGCDNTLWIAERVQDYSEV 296 Query: 288 HAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + E D + + E L ++ + GL+ R + ++Y +R Sbjct: 297 -------WEEHTHDRMPIADVPEGHTPTSWLTHEVMEGLQRRFPGRDVP-----EEYIER 344 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 +E++VI + YFLIVA+ I++A+ I VGPGRGS AG++ AYALTIT+IDPL Sbjct: 345 AKYEISVIEMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPLEH 404 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R S PD DIDF RR E+I Y ++G ++VAQ+ITFG+++ K A++D Sbjct: 405 DLLFERFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKD 464 Query: 461 VGRAL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIADDSRFREARLA--------DPSVD 509 + Q + DR+ L P A + L+ I D R + A DP V Sbjct: 465 SAKVHFGQPGFQMADRINGALPPAIMAKDIPLRGITDPDHERYSEAAEVRQMVETDPDVK 524 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 ++ + ++ LEG+ R A HA +++ L +PM++ +T ++ E GL+ Sbjct: 525 KIYDTARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLL 584 Query: 570 KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLES 625 K DFLGL+ LT++ +++ + + RG +V L + DD + Y LL+ TLG+FQL+S Sbjct: 585 KMDFLGLRNLTVIGDAIENIKRNRGEEVQLEQLHADDPKVSKVYDLLSRGDTLGVFQLDS 644 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 GM++ L+ M+P +DI+A ++LYRPGP ++ Y +RKNG+++I IHP ++ LK Sbjct: 645 GGMQELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLK 704 Query: 684 ----ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 ET G+I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F SG +N Sbjct: 705 EILDETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWSGMQEN 764 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G SK+ ++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D Sbjct: 765 GYSKSAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKK 824 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SA 858 +K + D R I ++PPSVN DF+ I + + AI+ VG+ I+ + A Sbjct: 825 DKSAIYLSDCRHLGINVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIASRKA 884 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 F S D+ ++D ++RV E+L+ AGA D F R L+ ++ Q +K Sbjct: 885 KGAFTSFSDYLDKIDLAACSKRVTEALIKAGAFDDFQQPRKGLMLIHEDAVDAVQTTKKA 944 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYK 972 ++FA G D + F+++ ++ E+ +LG Y SGHPLD ++ Sbjct: 945 ADKGQFDLFAGFGGG-DDASSEGAFAIDVPDDSWDRKHELALEREMLGLYVSGHPLDGFE 1003 Query: 973 PIL 975 L Sbjct: 1004 EAL 1006 >gi|268317469|ref|YP_003291188.1| DNA polymerase III, alpha subunit [Rhodothermus marinus DSM 4252] gi|262335003|gb|ACY48800.1| DNA polymerase III, alpha subunit [Rhodothermus marinus DSM 4252] Length = 1607 Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust. Identities = 291/728 (39%), Positives = 416/728 (57%), Gaps = 43/728 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL H+ YSLL+GA + +L++ A + A+AITD NLF EF + A GIQPI Sbjct: 4 FSHLHCHTQYSLLDGAARIQTLLERAAEYEIEAVAITDHGNLFGVPEFYRTAEKIGIQPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ L T++ T VLL GY+ LI+L S YL + R Sbjct: 64 IGCEF------YLTPTSRHDRNERTRYHQVLLAKNETGYRNLIKLSSLSYL-EGYYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L + EGLI T G I + + A K + +LFG+ Y+ +Q H Sbjct: 117 IDHELLTQY-HEGLIATTCCLQGEIPQTILHKGEEAARKLFEWYLELFGEDYYIEIQDH- 174 Query: 191 GYDRYRESQVVQLAYTHE--LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G ++ + L + E + ++ATN+ ++ D+E HDVL+ + +S R R Sbjct: 175 GLPEQKKINAILLRWAREYGVRVIATNDVHYVDRTDFEPHDVLLCLQTGKDMSDPSRLRF 234 Query: 249 TPDH-YLKNRSEM-VSIFSDLP-----EALENTVEIARRCSF------ILQVHAPILPRF 295 D YLK+ +EM ++ SD+ E + NT E+A +C F +L H PI P + Sbjct: 235 DNDQFYLKSPAEMRQALLSDIEPRLVDEMMANTGEVADKCRFQLPTGKLLMPHYPIPPEY 294 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + LR+ G R + +RL+ EL +I +M F+G Sbjct: 295 --------NGDMDAYLRDLVFEGARRRYGDPL------PHEVAERLEHELAIIKKMGFAG 340 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DF A++ + VGPGRGS AGS AY L IT+IDPL++ LLFERFLNP+R+SM Sbjct: 341 YFLIVQDFTTAARRLGVRVGPGRGSAAGSAVAYCLGITNIDPLKYDLLFERFLNPERVSM 400 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD DIDF R +VI YV KYG E V QIITFG++ AK A+RDV R L +P ++ DR+ Sbjct: 401 PDIDIDFDDRGRGKVIDYVVQKYGRENVCQIITFGTMGAKMAIRDVARVLGIPLAEADRI 460 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP+ P ++ QA + R + + DP + +LL ++ LEG RH HAAG++I Sbjct: 461 AKLIPDGPKVTLA-QAYEEVPELRALKESNDPQIRKLLHYAEVLEGSVRHTGVHAAGVII 519 Query: 535 GDRPLSQLVP--MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 +S VP + + +D TQ++ KWIE+ GL+K DFLGLKTLT+L +L + + Sbjct: 520 APGRVSDYVPVAVAKGKDNDTVTTQYDGKWIEEFGLLKMDFLGLKTLTILNDALQLIKEN 579 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G+++DL IP DD +T+ L T+ IFQ ES GMR+ L ++P I+D+IA+ +LYR Sbjct: 580 HGIEIDLDQIPLDDPKTFELFQRGETVAIFQFESEGMREWLRKLKPTSIDDLIAMNALYR 639 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D I Y RK+G E + HPL++P+LK T G+ IYQEQVMQ+AQ+++GY+L +AD Sbjct: 640 PGPMDLIPNYIARKHGLEPVEYPHPLLEPVLKNTYGIPIYQEQVMQMAQVMAGYTLGQAD 699 Query: 712 VLRRAMGK 719 +LRR + + Sbjct: 700 LLRRCVAE 707 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 164/264 (62%), Gaps = 4/264 (1%) Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 V+ +MGKK EEM K +E F++GA++ G+ A +F+++ KFA YGFNKSH+AAY++ Sbjct: 1123 VVHNSMGKKKVEEMKKHREIFVAGAAERGVDAETANAVFDMMEKFAGYGFNKSHSAAYSI 1182 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++YQTA++K +YP EF+AA+MT EM + +K+ +AR+ ++++PPS+N F V Sbjct: 1183 VAYQTAYLKANYPAEFMAAAMTSEMGDTKKLAVVLDEARRMGLELLPPSINRSQAHFTVE 1242 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 D RI + L AIKGVG I++A PF ++ D +D + +N++VLESL AGA Sbjct: 1243 DGRIRFGLGAIKGVGLGAIEAILKAREKHGPFRTIFDLIRHLDLRVVNKKVLESLARAGA 1302 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENS 948 LD R QL++++D +YAQ V+ +R ++F E GT + L + Sbjct: 1303 LDELEGHRAQLVEAIDLAVQYAQKVQADRMAGQASLFG-ESGTRTALPPPNLPVVQPWSR 1361 Query: 949 SVRFENEQRVLGFYFSGHPLDVYK 972 + + E+ ++GFY +GHPL+ Y+ Sbjct: 1362 ARCLKEERELIGFYVTGHPLEAYR 1385 >gi|296112095|ref|YP_003622477.1| DNA-directed DNA polymerase III, alpha chain [Leuconostoc kimchii IMSNU 11154] gi|295833627|gb|ADG41508.1| DNA-directed DNA polymerase III, alpha chain [Leuconostoc kimchii IMSNU 11154] Length = 1113 Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust. Identities = 327/1038 (31%), Positives = 548/1038 (52%), Gaps = 67/1038 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQ+ S+YSLL+ ++ I+ A+A+TD N ++ A++F Q A GI+P+ Sbjct: 2 YAPLQILSAYSLLKNPNTIEQIIQVAKERHYEAVALTDINVMYGAVDFYQTARKYGIKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L I+ + N T FP ++L+ GYQ L+ + S ++ Sbjct: 62 FGLTLLIN-----GLVNTATT-FP----VLLIAENQAGYQNLMWISSAKMTSKSSDMTLT 111 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L I ++L+ S A ++ + + L T K+ + +Y+ + + Sbjct: 112 IIADHLDGIN----VILSQDSELAQFIAAEYDDATDYWQDLTT--KIKPENVYLGI--NP 163 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQKDRPRVT 249 +S++V + ++ L+A ++ +L+ +D VL A+ A++ + K + Sbjct: 164 SLAPQIQSRLVNFSLANQARLIALDDIDYLNPDDAFTTQVLKAIDANAQLDGVKVLSQQL 223 Query: 250 PDHYLKNRSEMVSIF---SDLPEALENTVEIARRCSF-ILQVHAPILPRFIEKECDDIQK 305 H L++ +++ + + L A ++ ++ + I+ LP F E + ++ Sbjct: 224 GTHTLEDLNQVKAAYLTTDALKMAYQHNEQLVSKSHVDIMFKQTASLPSF---ELPNSEQ 280 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 L+ + GL RL + + + Y +RL EL VI + F+ YFLIV D + Sbjct: 281 TSGEYLQFISEKGLSNRLKGRKLPEDH----YSKRLKHELQVINHLGFNDYFLIVWDIVN 336 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A + NI +G GRGS AGS+ AYAL ITD+DPL+F LLFERFLNPDR+ MPD DID+ + Sbjct: 337 FAHQKNIQMGAGRGSAAGSLVAYALGITDVDPLQFGLLFERFLNPDRVQMPDIDIDWPDN 396 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPA 484 +R+ ++ Y+ +KYG AQIITFG+L AK ALRD R + + + R+ + IP Sbjct: 397 KREAILTYLHDKYGQRNFAQIITFGTLAAKQALRDTARVFGVSQAMMSRISRAIPQPKQG 456 Query: 485 HPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 VS+Q A+ + + D LL+++Q++EGL R+ STHAAG+V+ L + + Sbjct: 457 RKVSIQDALESSDNLKNTLSTIENGDLLLKVAQQIEGLPRNYSTHAAGVVLSADVLVKTL 516 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--VDLSLI 601 P+ + D +TQF +E GL+K D LGL L++L ++L ++A+ + ++S + Sbjct: 517 PV-QSGTDDRLLTQFEKNPVEALGLLKIDVLGLSNLSILAQTL-YVAKANLPEYFNISDV 574 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +T L T GIFQ ES G++ L ++P E I+A+ +LYRPGP NI + Sbjct: 575 PLDDEKTLDLYAAGDTDGIFQFESPGIKNVLRQLKPATFEHIVAVNALYRPGPSRNIETF 634 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R++G E + + + +L T G+I+YQEQVM +A+ +G++L EAD+LR AM KK Sbjct: 635 IKRRHGLENVTMLDASLKTILAPTFGIIVYQEQVMLVAEAYAGFTLGEADILRSAMSKKK 694 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E+M ++F++GA G A IF + +FA+YGFN+SHA AY+ +S++ A+MK Sbjct: 695 LEKMTAMHKQFVTGAVSLGHDAKQAEQIFAYIDEFANYGFNRSHAVAYSKLSFELAYMKA 754 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLA 840 HYPV F A + + + +K++++ A+ I + PPS+N F DN+ + L Sbjct: 755 HYPVAFFTAVLNANLGSPDKVRRYVTAAKSRGITVKPPSINR-SQRFWTSDNQTLQMGLN 813 Query: 841 AIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 I+GV T ++E + F S + F R+ K +L LV+AGALD FGY+R Sbjct: 814 NIRGVRTDFVTTLLEERQNNGEFQSFQSFVRRLPDKFRKHDILIQLVYAGALDAFGYNRA 873 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----TLEKFSVENSSVRFENE 955 +L+ +LD++ E +F D I ++K + +S+ + +E Sbjct: 874 ELISALDDLI--------------------EAASFGDLILNETKIKKVAEFSSTEKLAHE 913 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSR 1014 + V+G SGHPLD Y L + + +++ V + N I + A+V + ++ +T+KG Sbjct: 914 KDVIGVNLSGHPLDSY---LEMITTQHFQQIVDFTQKNQMITVIALVDNIRKTRTKKGEE 970 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + ++T S+ F Sbjct: 971 MAFITVSDMTGSISVTIF 988 >gi|317121639|ref|YP_004101642.1| DNA polymerase III subunit alpha [Thermaerobacter marianensis DSM 12885] gi|315591619|gb|ADU50915.1| DNA polymerase III, alpha subunit [Thermaerobacter marianensis DSM 12885] Length = 1264 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 302/890 (33%), Positives = 482/890 (54%), Gaps = 47/890 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS+YS L+GA + ++++ A PA+A+TD +N+ A+EF + A AAGI+PI Sbjct: 2 FVHLHCHSAYSFLDGASPVQALVERAAGLGMPALALTDHDNVAGAVEFDRAARAAGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFP-TVPS--------IVLLVSTAEGYQRLIELVSRMYL 121 G +L + + + + G + P T P +VLL + GY RL L++R +L Sbjct: 62 QGVELTLLLDEPAGSSGGGTSERPLTAPRGGELATAHLVLLATGPAGYARLCRLLTRAHL 121 Query: 122 LDQGKQSVRICLSW---LQEI--GTE-----GLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 +Q + R L W L+E+ G E GLI L+G GP+ +A A +R Sbjct: 122 -EQPRG--RPALPWSVLLEEVAPGGEPLPGHGLIALSGCRRGPVLQALLQGDRATALERA 178 Query: 172 LTFKKLFGDRLYVNLQRHRGY---DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 + FG R + L+ G+ +R + LA + +VATN+ + + + + H Sbjct: 179 RRLRDTFG-REHFFLELQGGWLPGNRALNRTLADLAEHLGVGVVATNDVHYATRDRFAVH 237 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 D+L V V + R + ++ LK+ M +F+ P+AL+ T+ IA RC +L Sbjct: 238 DLLACVRLGIPVDEPHPQRHLNAENDLKSPRAMAQMFAGYPQALKATLAIAERCQPVLPA 297 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELN 346 A +PR I+ E A L ++ +GA+ + G RQRL+ EL Sbjct: 298 GA--VPRPAFPLPPGIRAE----------AYLREQVERGALWRYGRITPRIRQRLEHELR 345 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 +I +++ + YFL+V D ++A++ I GRGS A S AY L ITD+D + LLFER Sbjct: 346 IIEKLQLADYFLLVWDVARYARQQGIRCA-GRGSAADSAVAYCLGITDVDAIERGLLFER 404 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FL+ +R PD DIDF RD+V YV+ +YG E VA + T+ + A+ ALRD G+AL Sbjct: 405 FLSLERAEQPDIDIDFDARYRDQVADYVEQRYGPEHVATVCTYQTYHARGALRDFGKALG 464 Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 P + +DR+ K +P + + +A+ + R+ L RL+++ + GL RH Sbjct: 465 FPTAVIDRIAKRVPYALSRHLG-RALEEVPELRDLDLPRERFRRLVDLCEAAAGLPRHMG 523 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 TH G+VI RPL +L P+ R + + QF+ + +E+ GL+K D L L+TL +++++ Sbjct: 524 THLGGLVISRRPLVELSPLQRSAKGRR-ILQFDKRGVEELGLVKLDLLPLRTLGAVEEAV 582 Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + +R D IP DD TY LL T T+G FQLES R ++P+ +ED++A Sbjct: 583 RVIRRRDPAFDYDRIPLDDRATYELLRTGETVGAFQLESPAQRALQPRLKPENLEDVVAS 642 Query: 647 VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 V++ RPGPI D + + R+ G+E + +HP ++P+L++T GV+++QEQV++IA ++G Sbjct: 643 VAIIRPGPIKGDMVEPFLARRRGREPVTYLHPKLEPILRKTWGVVLFQEQVIEIATAIAG 702 Query: 705 YSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 ++ EAD LRR M + E+M+ F+ A + G+ + +A IF ++ +A YGF + Sbjct: 703 FTPGEADRLRRVMTHARSPEDMEDIGRHFLRRAREQGVDEAVAQAIFRMIQGYASYGFCE 762 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 +HAAA+ V +Y+TA++ HYP E+ AA ++L+ C +A + I+I+P +N Sbjct: 763 AHAAAFGVTAYKTAYLLAHYPAEWYAALLSLQPMGYYPPNTLCVEAARRGIRILPLDINA 822 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV 872 V F I L A+KG+G A I+ E PF DF R+ Sbjct: 823 SQVGFAATPGAIRIGLRAVKGLGEEPAAAIVAERERGGPFRHFMDFLLRM 872 >gi|282852082|ref|ZP_06261440.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 224-1] gi|282556842|gb|EFB62446.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 224-1] Length = 899 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 293/836 (35%), Positives = 455/836 (54%), Gaps = 34/836 (4%) Query: 203 LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMV 261 LA EL L A + +L+ + L A+ +T + ++ + HYLK E+ Sbjct: 47 LATQFELSLAAVEDGQYLNRNEQFLRRTLQAIKSNTHLENVEQLAKQAGSHYLKTSEELQ 106 Query: 262 SIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 + ++ +ALEN +I + C+ + P LP+F + + + L + A GL Sbjct: 107 VNYRKFEIEDALENAEKIGQLCNAKITFQDPQLPKFKQNKF----PTSKEYLHSLAQNGL 162 Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 R KG + Y++RLD+EL VI M F YFLIV D + +A +I GPGRG Sbjct: 163 AKRF------KGQIPERYQKRLDYELKVINEMGFDDYFLIVWDVMNFAHSVHITTGPGRG 216 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 S AGS+ +YAL IT++DPL ++LLFERFLNP R MPD D+D +RRDEVI+Y+ KYG Sbjct: 217 SAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPDNRRDEVIKYMFEKYG 276 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499 AQI+TFG+L AK L+DV R + + R IP+ +A + Sbjct: 277 MNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKGKITLAEAYQKSKELQ 336 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 + L ++ LE L RH S HAAG+VI D L+++V + +PVTQ Sbjct: 337 LLVNTNTFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQAGPLG-IPVTQQT 395 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619 +E GL+K DFLGL+ LT+L + L GV++D + IP +D ET L T Sbjct: 396 KLNVESLGLLKIDFLGLRNLTILGNIIAALKSEGVEIDPNQIPLNDQETLALFQRGDTDA 455 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679 +FQ ES G+++ LE + PD EDI+A+ +LYRPGP++NI + NRK+GKE++ P + Sbjct: 456 VFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIGHFINRKHGKERVQYPDPSLK 515 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 +L T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK + + K++E+FI GA K Sbjct: 516 KILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVIQKEREKFIQGAVKL 575 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G K +A +++ +A+FA+YGFN+SHA AY+ I++ A+ K HYP F + + + N Sbjct: 576 GRRKEVAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPGAFYLSLLNSNIGNR 635 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859 KI ++ A++ I+ +PP + DF + + +I L AI+G+ + + I+E Sbjct: 636 NKIAQYLMQAQEAGIKTLPPDIENSQADFSLENGKILVGLKAIRGLRSDLLKQILEIK-- 693 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 +P S+ DF ++D+ L+ + +L+ AGA D +R +LL+ ++ + + N Sbjct: 694 RPIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKINKDLVESVKMAGSNL 753 Query: 920 TNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + +F T KI EK + E S++ E +GF +P+ + RK Sbjct: 754 S-----LFE----TLEPKIEEEKMPTAAEKSAMEVE----AMGFSTGINPIIAVQKYARK 800 Query: 978 MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K + + +G I + ++ K Q T+KG + + FS+ + + + FP Sbjct: 801 YNAKRLQAFESNEQG--IAVGKLMRIK-QITTKKGDNMAFAVFSDSSGDKDFTIFP 853 >gi|296117566|ref|ZP_06836150.1| DNA polymerase III, alpha subunit [Corynebacterium ammoniagenes DSM 20306] gi|295969297|gb|EFG82538.1| DNA polymerase III, alpha subunit [Corynebacterium ammoniagenes DSM 20306] Length = 1192 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 321/1022 (31%), Positives = 535/1022 (52%), Gaps = 68/1022 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + ++++ + PA+ +TD N+F + F ++ Sbjct: 4 MAKNSSFVHLHNHTEFSMLDGMAKVDLLAEEVSRQEMPAVGMTDHGNMFGSDAFYRRMTK 63 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSI---------VLLVSTAEGYQRLIE 114 AG++PIIG + + Q TP + +L A G L + Sbjct: 64 AGVKPIIGIEAYMAPGSRFNKKRQLWGTPDQKRDDVSASGAYLHQTMLAENATGLSNLFK 123 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E +G+I TG SG + A + + Sbjct: 124 LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 182 Query: 175 KKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 + ++G D ++ L H G D R R+ ++++ +LP + TN+ ++ E +H+ Sbjct: 183 QDIYGRDNYFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPSHEA 240 Query: 231 LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVH 288 ++ V + DR + +Y+K +M ++ + P+ +NT+ IA R + Sbjct: 241 MLCVQTGKTLMDPDRFKFDGTGYYIKTAEQMRELWDHMVPDGCDNTLWIAERVESYDSL- 299 Query: 289 APILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + E D + + E L ++ + GL+ R + ++Y +R Sbjct: 300 ------WEEHSHDRMPVADVPEGHTPTTWLTHEVMEGLKDRFDGKEVP-----EEYIKRA 348 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 ++E++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ Sbjct: 349 EYEISVIDMKGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHD 408 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R S PD DIDF RR E+I+Y ++G +++AQ+ITFG+++ K A++D Sbjct: 409 LLFERFLNPERPSAPDIDIDFDDRRRGEMIQYAAERWGEDKIAQVITFGTVKTKQAIKDA 468 Query: 462 GRAL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIADDSRFREARLA--------DPSVDR 510 + Q + DR+ L P A + L I D R + A DP V + Sbjct: 469 AKVHFGQPGFQMADRINGALPPAVMAKDIPLAGITDPEHERYSEAAEVRQMVETDPDVKK 528 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 + + ++ LEG+ R A HA +++ L +PM++ +T ++ E GL+K Sbjct: 529 IYDTARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLK 588 Query: 571 FDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLESS 626 DFLGL+ LT++ +L + RG+ ++L + DD + Y LL++ TLG+FQL+S Sbjct: 589 MDFLGLRNLTVIGDALANIKKNRGIDLNLEDLHADDPQVSKVYDLLSSGDTLGVFQLDSG 648 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHP-LIDPM-- 681 GM++ L+ M+P +DI+A ++LYRPGP+ +N +RKNG+++I IHP L +P+ Sbjct: 649 GMQELLKRMKPTGFKDIVASLALYRPGPMGVNAHWNYADRKNGRQEITPIHPELEEPLSE 708 Query: 682 -LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 L ET G+I+YQEQ+M+I+Q L+ Y+ EAD R+AMGKK E + ++ E+F G NG Sbjct: 709 ILGETYGLIVYQEQIMRISQKLANYTAGEADGFRKAMGKKKPEVLAQEYEKFSQGMFTNG 768 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 SK ++ + FA Y FNKSHAA Y ++S+ TA++K ++ E++AA +T D + Sbjct: 769 YSKGAVDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYFAPEYMAALLTSVADKKD 828 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860 K + D R I+++PP VN DF+ + I + + AI+ VG+ I+EA DK Sbjct: 829 KSAIYLADCRHLGIKVLPPDVNESAEDFEAVGDDIRFGMGAIRNVGSEVVESIIEARRDK 888 Query: 861 -PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 F S D+ ++ +RV ESL+ AGA D G+ R L+ ++ Q +K Sbjct: 889 GAFKSFSDYLDKISLVACTKRVTESLIKAGAFDSLGHPRKGLMLIQEDAVDSVQSTKKAA 948 Query: 920 TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKP 973 ++FA G D ++ F+++ ++ E+ +LG Y SGHPLD ++ Sbjct: 949 DKGQFDLFASFGG--DDGESVSSFAIDIPEESWDRKHELALEREMLGLYVSGHPLDGFED 1006 Query: 974 IL 975 L Sbjct: 1007 AL 1008 >gi|227503307|ref|ZP_03933356.1| DNA polymerase III subunit alpha [Corynebacterium accolens ATCC 49725] gi|227075810|gb|EEI13773.1| DNA polymerase III subunit alpha [Corynebacterium accolens ATCC 49725] Length = 1190 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 325/1023 (31%), Positives = 538/1023 (52%), Gaps = 69/1023 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ PA+ +TD N++ + F ++ + Sbjct: 1 MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVKQNMPAVGMTDHGNMYGSDAFYKRMTS 60 Query: 65 AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AG++PIIG + + + + N K G TP + ++ A G + L Sbjct: 61 AGVKPIIGIEAYMAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMIAENATGLRNLF 119 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R+ + E +G+I TG SG + A + Sbjct: 120 TLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 178 Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ ++G D ++ L H G D R R+ ++++ +LP + TN+ ++ E AH+ Sbjct: 179 WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPAHE 236 Query: 230 VLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287 ++ V DR + +Y+K+ ++M + DL P+ +NT+ IA R +V Sbjct: 237 AMLCVQTGKTFMDPDRFKFGGTGYYIKSAAQMRDTWDDLIPDGCDNTLWIAERVQDYSEV 296 Query: 288 HAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + E D + + E L ++ + GL+ R + ++Y +R Sbjct: 297 -------WEEHPHDRMPIADVPEGHTPTSWLTHEVMEGLQQRFPGRDVP-----EEYIER 344 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 +E++VI + YFLIVA+ I++A+ I VGPGRGS AG++ AYALTIT+IDPL Sbjct: 345 AKYEISVIEMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPLEH 404 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R S PD DIDF RR E+I Y ++G ++VAQ+ITFG+++ K A++D Sbjct: 405 DLLFERFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKD 464 Query: 461 VGRAL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIADDSRFREARLA--------DPSVD 509 + Q + DR+ L P A + L+ I D R + A DP V Sbjct: 465 SAKVHFGQPGFQMADRINGALPPAIMAKDIPLRGITDPDHERYSEAAEVRQMVETDPDVK 524 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 ++ + ++ LEG+ R A HA +++ L +PM++ +T ++ E GL+ Sbjct: 525 KIYDTARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLL 584 Query: 570 KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLES 625 K DFLGL+ LT++ +++ + + RG +V L + DD + Y LL+ TLG+FQL+S Sbjct: 585 KMDFLGLRNLTVIGDAIENIKRNRGEEVQLEQLHADDPKVSKVYDLLSRGDTLGVFQLDS 644 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 GM++ L+ M+P +DI+A ++LYRPGP ++ Y +RKNG+++I IHP ++ LK Sbjct: 645 GGMQELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLK 704 Query: 684 ----ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 ET G+I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F G +N Sbjct: 705 EILDETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQEN 764 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G SK+ ++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D Sbjct: 765 GYSKSAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKK 824 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SA 858 +K + D R I ++PPSVN DF+ I + + AI+ VG+ I+ + A Sbjct: 825 DKSAIYLSDCRHLGINVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIASRKA 884 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 F S D+ ++D ++RV E+L+ AGA D F R L+ ++ Q +K Sbjct: 885 KGAFTSFSDYLDKIDLAACSKRVTEALIKAGAFDDFQQPRKGLMLIHEDAVDAVQTTKKA 944 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYK 972 ++FA G D + F+++ ++ E+ +LG Y SGHPLD ++ Sbjct: 945 ADKGQFDLFAGFGGG-DDASSEGAFAIDVPDDSWDRKHELALEREMLGLYVSGHPLDGFE 1003 Query: 973 PIL 975 L Sbjct: 1004 EAL 1006 >gi|308447379|ref|XP_003087417.1| hypothetical protein CRE_07974 [Caenorhabditis remanei] gi|308256652|gb|EFP00605.1| hypothetical protein CRE_07974 [Caenorhabditis remanei] Length = 699 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 296/717 (41%), Positives = 416/717 (58%), Gaps = 43/717 (5%) Query: 99 IVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157 + +L T EG L L S Y QG R+ LQ G +GLI TG SG I Sbjct: 1 MTMLSETTEGMHNLFRLSS--YASMQGYYFKPRMDRELLQTYG-KGLITTTGCPSGEIQT 57 Query: 158 AFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYD--RYRESQVVQLAYTHELPLVAT 214 A + F+ +FG + + L H G D R +S ++++A ++PLVAT Sbjct: 58 RLRLGQYDEARQAAAEFQDIFGRENFFCELMDH-GLDIERRVQSDLIKIARDLKIPLVAT 116 Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALEN 273 N+ ++ E D EAH L+ V + + +R + +YLK +EM IF D P+A +N Sbjct: 117 NDLHYVHEADAEAHSALLCVQSGSRLDDPNRFKFDGSGYYLKTAAEMRHIFRDFPDACDN 176 Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 T+ IA RC+ A +PR+ + + E++ + GL R G Sbjct: 177 TLLIAERCNVEFNTSANYMPRYPVPDGE----TEDSWFIKEVEKGLHYRYPSGI------ 226 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 R++ ++E+ VI +M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ IT Sbjct: 227 PDSVRKQAEYEIGVITQMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRIT 286 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 D+DPL+ L+FERFLNPDR+SMPDFD+DF RR EVI YV KYG ERVAQI+T+G+++ Sbjct: 287 DLDPLQHGLIFERFLNPDRVSMPDFDVDFDDRRRGEVIMYVTEKYGDERVAQIVTYGTIK 346 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFRE 500 +K AL+D R L P+ ++L K +P DP HP +A + FR Sbjct: 347 SKQALKDASRVLCFPFGMGEKLTKAMPPAVMAKDIPLSGITDPEHPRYKEA----AEFRA 402 Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560 DP + + + LEGL R HAAG+++ PL ++P+ + + VTQF+ Sbjct: 403 VLTEDPEAKLVYDTALGLEGLKRQWGVHAAGVIMSSDPLIDIIPLQKREQDGQIVTQFDY 462 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619 E GLIK DFLGL+ LT++ +L+ + RG ++DL + DD +Y LL TLG Sbjct: 463 PTCEGLGLIKMDFLGLRNLTIISDALENIRLNRGEELDLERLELDDAPSYELLARGDTLG 522 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL 677 +FQL+ MR L M+PD EDI A+++LYRPGP+ D+ Y RKNG + I IHP Sbjct: 523 VFQLDGGPMRGLLRLMKPDNFEDISAVLALYRPGPMGADSHTNYALRKNGLQPITPIHPE 582 Query: 678 IDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733 ++ LK+ T G+IIYQEQVM IAQ ++G+SL +AD+LRRAMGKK K E+DKQ E F Sbjct: 583 LEEPLKDILETTYGLIIYQEQVMSIAQRVAGFSLGQADILRRAMGKKKKSELDKQYEGFS 642 Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 G + G S+ ++++L F+DY FNK+H+AAY V+SY TA++K HYP E++AA Sbjct: 643 GGMKERGFSEAAIKALWDILLPFSDYAFNKAHSAAYGVVSYWTAYLKEHYPAEYMAA 699 >gi|297618290|ref|YP_003703449.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM 12680] gi|297146127|gb|ADI02884.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM 12680] Length = 1031 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 315/1009 (31%), Positives = 534/1009 (52%), Gaps = 53/1009 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 +HL VHS +S L+G S+ +++D+ A PA+A+TD +NL A++F +A AGI+PI Sbjct: 1 MHLHVHSCFSFLDGGSSIKSLVDRAAESGMPALALTDHDNLCGAVQFKLEAQKAGIKPIQ 60 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G ++ + +L LL EGY+ L ++++ +L D ++ + Sbjct: 61 GVEVTVAGGYHL----------------TLLAEDEEGYRNLCRILTKAHL-DNPRRQPQA 103 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ-RH 189 L L+E EG+I L+G G I A + L + +++G D Y+ LQ + Sbjct: 104 GLDILKE-HAEGIIALSGCRKGEIPARILSRQYDAAYRAALAYLEIWGKDGFYLELQDTY 162 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--KDRPR 247 R + +LA + +VATNN + ED++ HD+L V T V + +RP Sbjct: 163 LPGTRTLNRDLAELAEKLGVGVVATNNVHYACPEDFKVHDILTCVRTLTRVYEVHPERP- 221 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + +++LK EM +F + P+A+ NT EIA RC L+ A + PRF + Sbjct: 222 LNAENHLKPEREMKKLFREYPQAVANTWEIAERCRPSLEPGASLFPRFNPPP----GQTA 277 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ LR A G R G + + +RL+ E+++I + ++ YFL+V D +++A Sbjct: 278 ESLLRELAYRG--ARKKYGRVTR-----RVEERLEHEIHIINTLGYADYFLVVWDIVEYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GRGS A S AY L IT++D L LLFERF++ +R PD DIDF R Sbjct: 331 RRQGI-RHTGRGSVADSFVAYCLGITEVDSLARGLLFERFMSLERAEKPDIDIDFDARWR 389 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D + YV KYG ++VA++ T+ + +A++A+R++G+AL +P +++DR+ K +P Sbjct: 390 DRISEYVTRKYGEDKVAKVCTYSTYRARSAVRELGKALGLPEAELDRVAKRLPYGAYADR 449 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++ RE+ L LL++ +++ G R TH G+V+ PL + P+ + Sbjct: 450 IRDMLSLLPELRESGLDRDKFALLLDLCERVAGFPRFLGTHLGGLVVSREPLCDITPLQQ 509 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 + ++ VTQF+ +E+ GL+K D L L+ ++ ++ ++ + Q D IP DD Sbjct: 510 SAKGEI-VTQFDKDDVEELGLVKLDLLSLRAMSAVEDTVRAVKQEKKTFDYEKIPLDDDA 568 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665 TY ++ T+G+FQLES R + IEDI+A V+L RPGPI +V Y +R+ Sbjct: 569 TYRMINKGQTIGVFQLESPAQRALQARLGASDIEDIVASVALIRPGPIKGNMVEPYISRR 628 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEE 724 G+E + +HP ++P+L +T GVI++QEQV++IA ++ ++ EAD LR+ M + ++ Sbjct: 629 QGREPVTFLHPALEPILAKTYGVILFQEQVIEIATAIARFTPGEADRLRKVMTHARSQKV 688 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MD+ FI A +NG+S+ A IF+ +A +A YGF ++HAAA+A SY+TA++ HYP Sbjct: 689 MDEVGREFIKKAVENGVSQEAAATIFKAMAGYASYGFCEAHAAAFATTSYKTAYLLRHYP 748 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +F AA ++ + +AR+ I+I+PP +N F+V I LA +KG Sbjct: 749 AQFYAAVLSNQPMGYYPPHVILNEARRRGIKILPPCINRSGEAFRVEKGGIRIPLARVKG 808 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 + + I+ +PF SL + + L R +++L+ GALD F +R +LL Sbjct: 809 LSREGLKKIL---VYRPFASLTEVWEKTG---LARDEMKNLIKCGALDVFDTNRRRLLVK 862 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963 + Q N E I A + G +D K+ + F+ + ++ E +LG Sbjct: 863 ARKLYFRPQPA----GNVKEGIIAFDDGEAADAKMDIPDFTEDE---KYAMEFEILGLSP 915 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 H + ++ L++ G K + A G+ +++A +++ + T+ G Sbjct: 916 REHLMARFRGYLKRNGFKSSRDLAALPDGSWVKVAGVLLCPHRPPTKSG 964 >gi|296132555|ref|YP_003639802.1| DNA polymerase III, alpha subunit [Thermincola sp. JR] gi|296031133|gb|ADG81901.1| DNA polymerase III, alpha subunit [Thermincola potens JR] Length = 1028 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 331/1018 (32%), Positives = 522/1018 (51%), Gaps = 68/1018 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ +S L+GA + +++ K PAIA+TD NNL A++F Q A AAGI+P Sbjct: 2 SFVHLHVHTPFSFLDGAGKIEDLIAKAVEMGCPAIAMTDHNNLCGAVKFHQLATAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQS 128 IIG + I MQD +T + P GY L +++ +L +G + Sbjct: 62 IIGTE--ITMQDGHHLTLLARNPL--------------GYANLCRILTDGHLNSPRGYPT 105 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 V+ LS L + +I+L+G G I + A + LFG ++ LQ Sbjct: 106 VK--LSTLAK-HCRDIIILSGCRMGKIPSLILRGRFREALNTAAEYLHLFGRSNFFLELQ 162 Query: 188 R-----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + + Y + QLA ++ +VATNN + ++E + HD+L V T + Sbjct: 163 PPLLPGSQALNNY----LAQLAEQLKMDIVATNNVHYCTKEGFPVHDLLTCVRTLTKLED 218 Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R+ ++ LK+ +EM ++F P A+ NT+ IA RC+ L+ I P F + Sbjct: 219 VHPERRLNAENDLKSPAEMANLFYQYPRAVHNTLMIADRCAPALKPPEKIFPSFPVPSGE 278 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 A A L +GA + G + +RL+ EL++I R+ + YFL+V Sbjct: 279 ------------PAAAYLRRLTYEGARKRYGRLTRAITERLEHELDIICRLGYEDYFLLV 326 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + +AKK I GRGS A S AY L IT++D + LLFERF++ +R PD DI Sbjct: 327 WDLVDYAKKQKIRYA-GRGSAADSAVAYCLFITEVDSINRGLLFERFMSLERAQKPDIDI 385 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RD V Y+ KYG RVA + T+ + +A++A RD+G+A+ P ++D + K +P Sbjct: 386 DFDSRYRDRVADYLYKKYGSNRVAGVCTYNTFRARSAFRDLGKAMDFPAEEIDLIAKRLP 445 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 A + L A+ RE L +L + G R STH GIV+ PL Sbjct: 446 FIRADQIDL-ALEKFPELREGGLPLEKYRQLFGYCTAVSGFPRFISTHLGGIVVSRDPLV 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 L P+ + + + V+QF+ ++IE GL+K D L L+T+++++ + + + D Sbjct: 505 NLTPLQKAAKG-IVVSQFDKEYIEDLGLVKLDLLSLRTMSVVENATLTIRAENPEFDYET 563 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D TY LL T T+G+FQLES R +Q C+EDI+A V+L RPGPI +V Sbjct: 564 IPLNDKATYELLNTGQTIGVFQLESPAQRALQSRLQASCLEDIVASVALIRPGPIKGNMV 623 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + R++GKE + +HP + P+L++T GV+++QEQV++IA +++G++ EAD LRR M Sbjct: 624 EPFIARRHGKEPVSYLHPKLKPILEKTYGVVLFQEQVIEIATVIAGFTPGEADRLRRVMT 683 Query: 719 K-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 + E+M F++ A NGISK IA IF + +A YGF ++HAAA+A +Y+TA Sbjct: 684 HARSHEDMLGIGREFVAKAIANGISKEIAETIFGYIVGYASYGFCEAHAAAFATTAYKTA 743 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++ HYP E+ AA ++ + C +AR+ I I+PP +N DF V I Sbjct: 744 YLVKHYPAEYYAAILSHQPMGFYGSNTICVEARRRGINILPPDINLSQRDFTVEKGNIRI 803 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 SL+ +KG+ + +I+ PF ++DF +RV K++R +L L+ GA D + Sbjct: 804 SLSQVKGMKASVLDNILAERNIAPFSGIDDFLNRV---KIDRALLTHLILCGAFDSLHSN 860 Query: 898 RMQLLQSLDNIQKYAQWVEKNRT---NKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 R QLL WV + RT K E + + G+ + + + + +F Sbjct: 861 RKQLL----------WWVNQQRTFKLQKEERVC--QNGSLPVNLPWPEIADYSEVEKFNW 908 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E ++LG H + ++ L K G + + G ++ A + + + TR G Sbjct: 909 EYKILGIDVRRHYMSYWRAYLDKHGFTNSLKIKSLPHGAKVKAAGLPIRPHRPPTRSG 966 >gi|257081296|ref|ZP_05575657.1| DNA polymerase III alpha subunit [Enterococcus faecalis E1Sol] gi|256989326|gb|EEU76628.1| DNA polymerase III alpha subunit [Enterococcus faecalis E1Sol] Length = 1066 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 324/996 (32%), Positives = 522/996 (52%), Gaps = 68/996 (6%) Query: 52 LFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 + A+EF + AGIQPIIG +L+ + +G + ++L +GYQ+ Sbjct: 1 MHGAVEFYEACQEAGIQPIIGLRLEYTPAEK-----EGHS------ELLLFAKNLKGYQQ 49 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++L S + +G + S L + L +T + G + + FF + Q Sbjct: 50 LMQLSSSK-MTTEGPFYLAEHQSLLSD-----LFAVTLSAKGEVAQTFFEDEQQAVH--- 100 Query: 172 LTFKKL--FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 F++L + D + ++ ++ R + +LP VA L+ E+ A Sbjct: 101 -AFQQLASYFDPQSLFVEHSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVT 159 Query: 230 VLMAVAHST---VVSQKDRPRVTPDHYLK----NRSEMVSIFSDLPEALENTVEIARRCS 282 VL ++ + + SQ P + +YL+ +M+ I E ++NT+++A C Sbjct: 160 VLESIKENNQLNITSQT--PEIEGLNYLREAETTMEQMLQIAG--AEVVQNTIQLAENCR 215 Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +H +LP F D Q + LR + L R+ + + Y++RL+ Sbjct: 216 VDIPLHQKLLPHF---PVPDNQTAG-SYLRTLCLEKLPERVP-------HLNEVYQKRLE 264 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 EL +I M F YFLIV D + + N I G GRGS AGS+ +Y L+ITD+DP+++ L Sbjct: 265 KELTIIHNMGFDDYFLIVWDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDL 324 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R +MPD D+D +RR+EV+ YV KYGH +AQI TFG++ AK LRDV Sbjct: 325 LFERFLNPERYTMPDIDLDIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVA 384 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 R + S+ +R +PN + +A + R +E P+ L + + +LEGL Sbjct: 385 RVFGLSQSEANRWSAAVPNKLKITLE-EAYQESKRMQELVNFSPNNQLLYKTAVQLEGLP 443 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 RH STHAAG+VI D L LVP+ + +++ +TQF M +EK GL+K DFLGL+ L+++ Sbjct: 444 RHVSTHAAGVVISDENLLNLVPL-QPGSNEILLTQFTMNDVEKIGLLKMDFLGLRNLSII 502 Query: 583 QKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +L + + + L+ IP DD T L T G+FQ ES+G+R L + P IE Sbjct: 503 DDTLTAVKRVYNRTIRLNQIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIE 562 Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 DI A+ +LYRPGP+ NI V+ RK G E+I P + P+L+ T G+I+YQEQ+MQ+A Sbjct: 563 DIAAVNALYRPGPMQNIDVFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAK 622 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 ++G+SL +AD+LRRA+ KK K+ +D+++ F++GA + G K A +++ + +FA+YGF Sbjct: 623 MAGFSLGQADILRRAISKKKKDVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGF 682 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 N+SHA AY+ I +Q A++K HYP F A + N KIK++ +AR+ I+ PS+ Sbjct: 683 NRSHAFAYSFIGFQMAYLKVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSI 742 Query: 822 NTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNR 879 N F + +I + +++KG+ ++I+ E + P+ + ++F R+D K L Sbjct: 743 NQSHYSFYLNQQQQILFGFSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKV 802 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLD-NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +E L+ GA D +R QL L+ NIQ + + E + E Sbjct: 803 ENIEPLIAIGAFDEIAPNRRQLAVGLESNIQSI--LLSGGSMDLLETLKPKE-------- 852 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRL 997 E+ + R E E++ LG Y SGHP + +K K + + V + N +L Sbjct: 853 --EEIADYPLEERLEQEEQYLGVYLSGHPTEEFK----KTRLAKQTQLVHELVENQPTKL 906 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V + + +T+KG ++ +V + FP Sbjct: 907 LIYVKNIRTIRTKKGEQMAFVDGDDTTGSISLTLFP 942 >gi|182418120|ref|ZP_02949420.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521] gi|237666184|ref|ZP_04526171.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377938|gb|EDT75478.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521] gi|237658274|gb|EEP55827.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str. BoNT E BL5262] Length = 702 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 275/707 (38%), Positives = 420/707 (59%), Gaps = 31/707 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E FVHL +H+ YSLL+G+ + ++ + +IAITD ++ ++F + A Sbjct: 1 MENEKKFVHLHLHTEYSLLDGSGKIKKLMKQTKELGMDSIAITDHGVMYGLVDFFKAAEE 60 Query: 65 AGIQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 GI+ I+GC++ + + ++K ++ + +VLLV GYQ L+++VS M ++ Sbjct: 61 YGIKAILGCEVYVAAKSMHIKQPDKENSTH----HLVLLVKNEIGYQNLMKIVS-MASIE 115 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI +L+ +EG+I L+ G + ++ + A+K L +K +F D Y Sbjct: 116 GFYYKPRIDHEYLKN-HSEGIIALSACLGGEVQSDLLNDNYEKAKKDALMYKDIFKDGFY 174 Query: 184 VNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H ++ + +++ ++LA +PLVATN+ ++ +ED ++HD+LM + + V Sbjct: 175 LEIQNHGMEEQKKVNELNIKLAEETGIPLVATNDVHYIKKEDSKSHDILMCIQTAKTVDD 234 Query: 243 KDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +R R D YLK+ EM +FS +PEALENTV+IA C+F + H LP+F E Sbjct: 235 PNRRRYPSDQFYLKSPEEMWDMFSYMPEALENTVKIADECNFKYKFHESKLPKFPLPEGK 294 Query: 302 DIQKEEENE---------------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 D E E LR K + EV + AQ++ RL++EL Sbjct: 295 DDPYEYLKETCYTGLIDRYDVFKDLREKELDYDEV---NKIVENSSEAQEFVDRLEYELG 351 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI +M + YFLIV DFI+++ N IP GPGRGS AGS+ AY L IT IDP+++SL+FER Sbjct: 352 VIKQMGYIDYFLIVWDFIKFSYDNGIPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFER 411 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD D DFC +RR EVI YV KYG + V+QIITFG++ A+ +RDVGRA+ Sbjct: 412 FLNPERVSMPDVDSDFCYERRQEVIDYVVRKYGKDCVSQIITFGTMAARLCIRDVGRAMN 471 Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 YS+VD++ K+IP + +A+ + + A +D V L+++S LEGL RH+S Sbjct: 472 YSYSEVDKIAKMIPTMLGITIE-KALDLNPELKIAYDSDERVKNLIDVSMDLEGLPRHSS 530 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 THAAG+VI +PL + VP+ ++ S VTQF M +E+ GL+K DFLGL+TLT++ ++ Sbjct: 531 THAAGVVIASKPLVEYVPLQKNDES--IVTQFGMNTLEELGLLKMDFLGLRTLTVMSDAI 588 Query: 587 DFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + RGV +DL I FDD E Y ++ T G+FQLES GM ++ ++PD +EDIIA Sbjct: 589 KMVKVNRGVDIDLDKIDFDDKEVYKMIGEGRTAGVFQLESPGMTSFMKELKPDNLEDIIA 648 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 +SLYRPGP+ I Y K +K+ P ++ +L T GV++YQ Sbjct: 649 GISLYRPGPMAEIPRYIECKRNPDKVEYETPELESILNVTYGVMVYQ 695 >gi|257893645|ref|ZP_05673298.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,408] gi|293560684|ref|ZP_06677168.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162] gi|257830024|gb|EEV56631.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,408] gi|291605358|gb|EFF34808.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162] Length = 1027 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 285/792 (35%), Positives = 439/792 (55%), Gaps = 34/792 (4%) Query: 248 VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 +T + YL + EM+ F + L +A+ +A SF Q H +LP + K Sbjct: 140 LTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG----K 195 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR + +E R+ + ++Y++RLD+EL+VI +M F YFLIV D + Sbjct: 196 QAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMA 248 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D + Sbjct: 249 FAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDN 308 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K IPN Sbjct: 309 RREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKI 368 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++ QA + E A L + + LEGL RH STHAAG+VI D+ L +LVP+ Sbjct: 369 TLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPL 427 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ L IP + Sbjct: 428 QRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPLN 486 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T L T G+FQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI + R Sbjct: 487 DAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNIDTFIAR 546 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ KK K+ Sbjct: 547 KKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDV 606 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++K F+SGA + G S+ A ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P Sbjct: 607 LDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHP 666 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIK 843 F + M N K+K++ +AR+ +++ PS+N F+ V I + L AIK Sbjct: 667 GAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIK 726 Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 G+ I+ E + PF S++ F R+D + L +L+SL G D +R QL+ Sbjct: 727 GIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLM 786 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 L+ K V + I A ++ +D E+ +E + G Y Sbjct: 787 LDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL---------GIY 835 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 SGHP + + ++ + + + I N + L M+ ++ +T+KG + +V + Sbjct: 836 LSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGT 891 Query: 1022 EPAKEYEANFFP 1033 + + E FP Sbjct: 892 DSSGEISVTVFP 903 >gi|227504715|ref|ZP_03934764.1| DNA polymerase III subunit alpha [Corynebacterium striatum ATCC 6940] gi|227198725|gb|EEI78773.1| DNA polymerase III subunit alpha [Corynebacterium striatum ATCC 6940] Length = 1190 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 324/1020 (31%), Positives = 539/1020 (52%), Gaps = 63/1020 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ + PA+ +TD N++ + F +K + Sbjct: 1 MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSNAFYKKMTS 60 Query: 65 AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AG++PIIG + + + + N K G TP + +L A G + L Sbjct: 61 AGVKPIIGIEAYMAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMLAENATGLKNLF 119 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +L S Q + R+ + E EG+I TG SG + A + Sbjct: 120 KLSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAM 178 Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ ++G D ++ L H G D R R+ ++++ +LP + TN+ ++ E +H+ Sbjct: 179 WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPSHE 236 Query: 230 VLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287 ++ V DR + +Y+K+ ++M I+ D+ P+ +NT+ IA R +Q Sbjct: 237 AMLCVQTGKTFMDPDRFKFDGTGYYIKSAAQMREIWDDMIPDGCDNTLWIAER----VQD 292 Query: 288 HAPILPRFIEKECDDIQKEEENE----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 + I E + L ++ + GL+ R + ++Y +R ++ Sbjct: 293 YGEIWEEHTHDRMPIADVPEGHTPTSWLTHEVMEGLQDRFPGKEVP-----EEYVKRAEY 347 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LL Sbjct: 348 EISVIDMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPIEHDLL 407 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R S PD DIDF RR E+I+Y +++G ++VAQ+ITFG+++ K A++D + Sbjct: 408 FERFLNPERPSAPDIDIDFDDRRRGEMIQYAADRWGEDKVAQVITFGTVKTKQAIKDSAK 467 Query: 464 AL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIAD--DSRFREAR------LADPSVDRLL 512 Q + DR+ L P A + L I D R+ EA DP V ++ Sbjct: 468 VHFGQPGFQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIY 527 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 E ++ LEG+ R A HA +++ L +PM++ +T ++ E GL+K D Sbjct: 528 ETARGLEGVVRQAGVHACAVIMASVRLMDHIPMWQRPADGAYITGWDYPACEAIGLLKMD 587 Query: 573 FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLESSGM 628 FLGL+ LT++ L+ + + RG ++ L I DD + Y LL+ TLG+FQL+S GM Sbjct: 588 FLGLRNLTVIGDCLENIKKNRGEEIHLEEIHADDPNVSKVYELLSRGETLGVFQLDSGGM 647 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM---L 682 ++ L+ M+P +DI+A ++LYRPGP ++ Y +RKNG+++I IHP L +P+ L Sbjct: 648 QELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLREIL 707 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 ET G+I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F G +NG S Sbjct: 708 DETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYS 767 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 K ++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K Sbjct: 768 KDAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKS 827 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861 + D R I ++ P VN +F+ I + + AI+ VG+ I++ +K Sbjct: 828 AIYLSDCRHLGIHVLSPDVNESVENFQAVGEDIRFGMGAIRNVGSEVVESIVKTRKEKGA 887 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEK 917 + S D+ +++ +RV ESL+ AGA D + R L+ ++D +Q + +K Sbjct: 888 YTSFSDYLDKIELTACTKRVTESLIKAGAFDSMEHPRKGLMLIHEDAVDAVQTTKKAADK 947 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPIL 975 + + E+ + ++ EN + E E+ +LG Y SGHPLD ++ L Sbjct: 948 GQFDLFAGFGGEEQAEVASAFAID-IPDENWDRKHELALEREMLGLYVSGHPLDGFEEAL 1006 >gi|241889100|ref|ZP_04776404.1| DNA polymerase III subunit alpha [Gemella haemolysans ATCC 10379] gi|241864349|gb|EER68727.1| DNA polymerase III subunit alpha [Gemella haemolysans ATCC 10379] Length = 1089 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 326/1048 (31%), Positives = 553/1048 (52%), Gaps = 102/1048 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + ++QVHS+Y LL + ++ K+A D Q ++ I D N ++ A++ + + GI I Sbjct: 2 YYNMQVHSAYDLLNSTIKYESLFSKLAKDNQKSVVIVDPN-MYGAIKAYKASKKVGINLI 60 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G ++++ L N LL T + + +L+E+ ++ G++ Sbjct: 61 QGLEVNLGYGIGLLKFN-------------LLCKTEKMFYKLLEISTKFM---NGEE--- 101 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR----LLTFKKLFGDRLYVNL 186 W E ++ ID F + V E R K L L Sbjct: 102 ----WTVE----------DFANDMIDYREDFVLTVVDELRDSMEFSYLKNL--------L 139 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ Y + ES V L Y+ +V T S +L++E Y+ V A+ + ++ + Sbjct: 140 SKYDFYFGFNESFQVGL-YSDYDNIVYTKPSFYLNKEHYQQVIVSRAIRDNKKLNIQGLT 198 Query: 247 RVTPDHYLKNRSEMVSI--------FSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ D +++ + + I ++ ++ N I C + L LP++I Sbjct: 199 TISGDDFVREKKDFEEILALGDEELYAIFEKSFANQKLIIDSCEYELNFSGYHLPKYIYG 258 Query: 299 ECDDI-QKEEENELRNKAV-AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 E ++I +K E + V G++ +L G Y++R +EL +I M F+ Y Sbjct: 259 EKEEIFEKLSSKEYLHYLVQKGVKEKLI------GKDLYQYQKRYSYELKIIDEMGFNDY 312 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DF+++AK N I VG GRGS AGS+ Y L IT+ DPL ++LLFERFLN +R+SMP Sbjct: 313 FLIVYDFVKYAKDNGILVGAGRGSAAGSLVCYLLDITEADPLEYNLLFERFLNKERISMP 372 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D DIDF RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+ R LQ ++ Sbjct: 373 DIDIDFQDTRRDEVIKYVEEKYGSDKVAQIITFTTFQSKSAARESARILQFD----EQTL 428 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIG 535 K I ++ + +L+ + S + +++ R I+ LE L ++ S HAAGIVI Sbjct: 429 KFISSNISSTRTLKECYEISEELRTFINTSNINKRWFSIALSLEHLPKNPSVHAAGIVIS 488 Query: 536 D-RPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 D +PL P+ S++ +TQ+ M +E GL+K DFLG++ LT++ ++ + + Sbjct: 489 DDKPLVNYTPL---AESNMTKYLTQWTMDDVESVGLLKIDFLGIRYLTMVSSIVEEIRKE 545 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D++ I + D + Y L T GIFQ ESSGM++ L ++P DI+A+ +LYRP Sbjct: 546 NPAFDITKINYQDPKVYELFAKGKTEGIFQFESSGMKEKLNLLKPTEFNDIVAMNALYRP 605 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+ I VY RKN +E+++ HP ++ +LK+T GVI+YQEQ+M IA + SL+EAD Sbjct: 606 GPMAQIEVYVRRKNKEEQVIYPHPHLEKILKDTYGVIVYQEQIMLIAVNFAHMSLNEADN 665 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 +RRA+ KK KE+++ F+ + G +A +F+L+ FA+YGFNKSHA Y+++ Sbjct: 666 MRRAVSKKKKEDLEYYGRIFVEKSVAAGYDIKVAEKLFDLIVTFANYGFNKSHAVVYSML 725 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +Y+ A++K +Y F+ A + + + +KI ++ Q+ I ++ P VN +F+V Sbjct: 726 AYRLAYLKVYYTKHFMTALLNNVISSEKKINEYKQELMNLGINLVKPDVNRSLANFRVFK 785 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 N I ++L AIK VG + I++ + P+ ++DF R++ KK++ + SLV AGAL Sbjct: 786 NDIVFALTAIKNVGYRSGYEIVQDRINFGPYLDIDDFLKRMN-KKVDYQAAVSLVKAGAL 844 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNR--TNKHENIFAHEKGTFSDKITLEKFSVENSS 949 D FGY+R L++ +++ + NR N + E G +TL+ +E+ S Sbjct: 845 DTFGYNRATLMKKVND------YYSDNRQFINNVRVALSAESG-----LTLKVEEIEDYS 893 Query: 950 V--RFENEQRVLGFYFSGHPLDVYKPILRKMGIK--GYEESVATIRGNNIRLAAMVVSKQ 1005 + + + E+ V G YF HP+ V K + ++ G E S + + +++++ Sbjct: 894 ITEKIQMEKEVTGTYFLKHPVQVEKEKYSYLPLQYIGGEVSDSYVE---------IITRK 944 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +T+ G + ++T ++ +Y+ FP Sbjct: 945 EIRTKNGDYMAFLTVNDGKNDYDVTVFP 972 >gi|300933332|ref|ZP_07148588.1| DNA polymerase III subunit alpha [Corynebacterium resistens DSM 45100] Length = 1189 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 338/1066 (31%), Positives = 547/1066 (51%), Gaps = 78/1066 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+G ++ + + PA+ +TD N+F A F + AA I+P Sbjct: 5 SFVHLHNHTEYSMLDGMAKVDMLAAEAKRQGMPAVGMTDHGNMFGADAFYRAMTAADIKP 64 Query: 70 IIGCQLDID-----MQDNLKMTNQGKTPFPTVPSIVLLVST-----AEGYQRLIELVSRM 119 IIG + I Q+ ++ N + S L T A G + L L S Sbjct: 65 IIGIEAYIAPESRFNQNRVRWGNPEQKSDDVSASGAYLHQTMIAENATGLRNLFYLSSLA 124 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Q + R+ + E EG+I TG SG + A + ++ ++G Sbjct: 125 SYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAKWQDIYG 183 Query: 180 -DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 D ++ L H G + R RE ++++ +LP + TN+ ++ E AH+V++ V Sbjct: 184 KDNFFLELMDH-GLEIERRVRED-LLEIGRRLDLPPLVTNDCHYVLESQAAAHEVMLCVQ 241 Query: 236 HSTVVSQKDRPRVT----------PDHYLKNRSEMVSIFS-DLPEALENTVEIARRC--- 281 + + D P + +YL+ ++ + + ++P+ +NT+ +A R Sbjct: 242 TGSTL---DEPTLDEGGKRFAFSGTGYYLRTAEDLRAQWDKEVPKGCDNTLWVAERVQDY 298 Query: 282 SFILQVHAPILPRFIEKECDDIQKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 S + + H F D+ + E L ++ + GLE R + +Y Sbjct: 299 SEVWEEHP-----FDRMPIADVPEGETPTTWLTHEVMKGLEDRFPGKPVPT-----EYID 348 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 R +E+ VI + YFLIVA+ I++A+ I VGPGRGS AGS+ AYALTIT+IDP+ Sbjct: 349 RAKYEIEVIDMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGSLVAYALTITNIDPME 408 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 LLFERFLNP+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K A++ Sbjct: 409 HGLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYASDRWGEDKIAQVITFGTVKTKQAIK 468 Query: 460 DVGRAL--QMPYSQVDRLCK-LIPNDPAHPVSLQAIAD--DSRFREAR------LADPSV 508 D RA Q + DR+ K L P A + L I D R+ EA DP V Sbjct: 469 DSARAHYGQAGFQMADRITKALPPAIMAKDIPLSGIMDPEHERYNEAAEVRNLIETDPDV 528 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 +++ + ++ LEG+ R A HA +++ PL +PM++ + +T + E GL Sbjct: 529 NKIYQDARGLEGVVRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEAIGL 588 Query: 569 IKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 +K DFLGL+ LT++ +L+ + A R +DL + +D TY LL TLG+FQL+S G Sbjct: 589 LKMDFLGLRNLTVIGDALENIKANRDFDLDLENLSTEDEPTYELLARGETLGVFQLDSGG 648 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHP-LIDPM--- 681 M++ L+ M+P DI+A ++LYRPGP + Y +RKNG++ IV IHP L +P+ Sbjct: 649 MQELLKRMKPTGFNDIVAALALYRPGPMGVGAHWEYADRKNGRKPIVPIHPELEEPLQEI 708 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L+ET G+I+YQEQ+M+I+Q ++ Y+ +AD R+AMGKK E ++K+ F SG NG Sbjct: 709 LEETYGLIVYQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLEKEFVNFESGMKDNGF 768 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 S +++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K Sbjct: 769 SDAAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYAPEYMAALLTSVADKKDK 828 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK- 860 + D R I+++ P VN F+ I + L A++ VG I+ + +K Sbjct: 829 SAIYLADCRHLGIRVLSPDVNESAYTFQSVGEDIRFGLGAVRNVGEEVVESIIRSREEKG 888 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 F D+ +++ ++RV ESL+ AGA D G+ R L+ ++ +K Sbjct: 889 AFKDFSDYLDKIEIAAASKRVTESLIKAGAFDSLGHPRKGLVLVHEDAVDAVTSTKKAAA 948 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPI 974 ++FA G D+ + F V+ ++ E+ +LG Y SGHPLD ++ Sbjct: 949 KGQFDLFA---GFGDDEAVGDVFRVDVPDQNWDRKHELAMERDMLGLYVSGHPLDGFEDA 1005 Query: 975 LRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWV 1018 L ++ NN +++ ++ S +++ R G+ WV Sbjct: 1006 LDAQVDTPLTTVLSGELPNNREVKIGGIISSVERRVDRNGNP--WV 1049 >gi|258614449|ref|ZP_05712219.1| DNA polymerase III, alpha subunit [Enterococcus faecium DO] Length = 1013 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 285/792 (35%), Positives = 439/792 (55%), Gaps = 34/792 (4%) Query: 248 VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 +T + YL + EM+ F + L +A+ +A SF Q H +LP + K Sbjct: 126 LTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNG----K 181 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR + +E R+ + ++Y++RLD+EL+VI +M F YFLIV D + Sbjct: 182 QAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMA 234 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A +N I G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D + Sbjct: 235 FAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDN 294 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EV+ YV+ KYG +AQI TFG++ AK LRD R + S+ +R K IPN Sbjct: 295 RREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKI 354 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++ QA + E A L + + LEGL RH STHAAG+VI D+ L +LVP+ Sbjct: 355 TLT-QAYKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPL 413 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 R + +TQ+ M +E GL+K DFLGL+ L+++ +L + + G ++ L IP + Sbjct: 414 QRG-SDEAFLTQYTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPLN 472 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T L T G+FQ ES+G+R L + P+ IEDI A+ +LYRPGP+ NI + R Sbjct: 473 DAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNIDTFIAR 532 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K GKE I + P+LK T GVI+YQEQ+MQIA ++G++L ++D+LRRA+ KK K+ Sbjct: 533 KKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDV 592 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D++K F+SGA + G S+ A ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P Sbjct: 593 LDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHP 652 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIK 843 F + M N K+K++ +AR+ +++ PS+N F+ V I + L AIK Sbjct: 653 GAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIK 712 Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 G+ I+ E + PF S++ F R+D + L +L+SL G D +R QL+ Sbjct: 713 GIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLM 772 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 L+ K V + I A ++ +D E+ +E + G Y Sbjct: 773 LDLEG--KIQNIVYSGGSLDLLGIMALKEEEVADYTLEERLKLEEEYL---------GIY 821 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 SGHP + + ++ + + + I N + L M+ ++ +T+KG + +V + Sbjct: 822 LSGHPAEGFD----RLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGT 877 Query: 1022 EPAKEYEANFFP 1033 + + E FP Sbjct: 878 DSSGEISVTVFP 889 >gi|326803733|ref|YP_004321551.1| DNA polymerase III, alpha subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326651141|gb|AEA01324.1| DNA polymerase III, alpha subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 1124 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 326/1044 (31%), Positives = 535/1044 (51%), Gaps = 70/1044 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L V++SY+LL+ + + + ++ A +AI+D N ++ ++F I P+ Sbjct: 2 FTPLNVNTSYTLLKSPMPVKDYVEAAKALDYQNLAISDVNVMYGVIDFYNYCKHYDINPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQSV 129 IG + I D ++ +GY+ L+ L S + + Q+V Sbjct: 62 IGMTVSIQRPDQRDQE-----------EWLIYAKNDQGYRSLMRLSSLIKSQEPIDYQAV 110 Query: 130 RICL-----SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183 R + +W I + ++GP + A L +++F LY Sbjct: 111 RDFIFNNHRNW---------ITIIEANNGPHMHFLKQQREEEAAAFLDKLREIFKASDLY 161 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-AHSTVVSQ 242 + + Y ++ + LA ++PL+A + +LS+ D DVL A+ + + + Sbjct: 162 MGVDESY---LYHQAALEDLAKESQIPLIAQSKLAYLSKNDVFTQDVLAAIEVNQPLDNY 218 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +++ +L++ + + + L +A + E +Q +LP++ Sbjct: 219 REKAGAEGQFFLRSLASYQESYQNKGLAKAFDQVSEAFDGVHLDIQFDQALLPKY---PI 275 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + Q +E L++ A GL R+ + Q YR+RLD+EL++I +M F+ YFLIV Sbjct: 276 ESGQSSKEF-LKDLAYQGLSKRVG--------NEQSYRERLDYELSIIDQMGFNDYFLIV 326 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + +A K +I GPGRGS AGS+ AY L ITD+DP+R LLFERFLNP+R SMPD D+ Sbjct: 327 WDVMDYAHKKHIMTGPGRGSAAGSLVAYCLFITDVDPIRNHLLFERFLNPERQSMPDIDL 386 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF D+R +++ YV +KYG + VAQI TFG+ A+ A+RDVG A + + R I Sbjct: 387 DFPDDKRQDILNYVYHKYGSDHVAQISTFGTFAARKAIRDVGNAFNKSQATMSRWANTIS 446 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A S+ ++ + + ++K+EGL RH STHAAG+++ D+ L+ Sbjct: 447 SQ--NQTLEEAYQSSSQLQQYIAEEEDGQLWFQTAKKIEGLPRHVSTHAAGVILSDQDLT 504 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +P+ + + +Q+ M IE+ GL+K DFL L LT+L S+ A++ K L Sbjct: 505 DFIPLQAALNHSIHQSQYTMHEIERIGLLKIDFLSLSNLTILANSVR-AAEKISKSRLRP 563 Query: 601 IPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I F +D Y + + TLG+FQ ES+G+R+ L ++P + D+ A+ +LYRPGP+ I Sbjct: 564 IDFPRNDQSVYRVFSQANTLGVFQFESNGIRRVLRRVKPSSMADLAAVNALYRPGPMQQI 623 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + NRK+GKE I HP ++ +LKET G+I+YQEQVMQ+AQ ++G+SL EAD+LRR + Sbjct: 624 NHFVNRKHGKEPITYPHPDLEGILKETYGIIVYQEQVMQVAQKIAGFSLGEADILRRTIS 683 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK K MD+ + +FI A G S+++A I+ + FADYGFNKSHA AY+ ++Y+ AW Sbjct: 684 KKDKATMDRLQAKFIRQAVAKGYSQSVAPKIYSYIEAFADYGFNKSHAYAYSYLAYEMAW 743 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYY 837 +K HYP F ++ K ++ +A +++ P VN +V D++ I Sbjct: 744 LKVHYPAAFYYGNLLQHKIYETKGQQLTYEASLCQVKLQLPDVNRSYTTMQVVDDQHILL 803 Query: 838 SLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LA I+G+ T + E + SL DF R+ LE L AGALD FGY Sbjct: 804 GLADIRGLMRNFTTAIVQERLNGGQYRSLGDFIQRLPKNYSKADNLEKLALAGALDSFGY 863 Query: 897 SRMQLLQSLDNIQKYAQWVE--KNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFE 953 +R L++ + + K + V N+ ++F E + ++ +I + + + + E Sbjct: 864 NRRTLIE--EALPKLLEAVNLFGGSNNQQLSLFNQENRELYAPEI--KHLNEYDDRLLLE 919 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGI----KGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 EQ LG S Y+P + I K ++S TI G +V ++ +T Sbjct: 920 GEQETLGQSISVELYSDYRPYYQNGQIQPINKLSDKSQVTIIGE-------IVKVKRIQT 972 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 +K + ++T + E E FP Sbjct: 973 KKNQPMAFLTLRDEHSEVEVIAFP 996 >gi|326692987|ref|ZP_08229992.1| DNA-directed DNA polymerase III, alpha chain [Leuconostoc argentinum KCTC 3773] Length = 1117 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 333/1046 (31%), Positives = 532/1046 (50%), Gaps = 80/1046 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQ+ S+YSLL+ ++ I+ AIA+TD N ++ A+EF + A ++P+ Sbjct: 2 YAPLQILSAYSLLKNPNTIPQIIATAKVRHYEAIALTDLNVMYGAVEFYRTALENNLKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L+++ + N T FP ++L+ T GYQ L+ L S ++ Sbjct: 62 FGVTLEVN-----GLVNTATT-FP----MILISETQVGYQNLMWLSSA----KMTAKTPD 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS--QVAEKRLLTFKKLFGDRLYVNLQR 188 + L+ L + EG+ ++ G S + + F S+ VA+ + LY+ + Sbjct: 108 LTLAALSD-HLEGINVILPGDS---ELSQFIASAYDDVAQYWQTLTTYIAPTHLYLGINP 163 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST------VVSQ 242 ++++ + + L+A ++ +L+ +D VL ++ + +SQ Sbjct: 164 QMAPQI--QTRLAEFQAATQAQLIALDDVAYLNTDDAFTTQVLKSIDANVKLEGIKALSQ 221 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFIEKEC 300 + ++ D+ N+ + SDL +A L N +AR + LP F + Sbjct: 222 QSGTQILQDY---NQVKAAYQTSDLLKAAFLANEALVARSQVTLTFSQTAALPAF---QL 275 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFSGYFL 358 + LR A GL RL +G H Y+ L EL VI ++ F+ YFL Sbjct: 276 PAGMPDAGTYLRTLAEKGLAARL------QGLHVDQSRYQALLAHELAVIDQLGFNDYFL 329 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV D + +A +N+I +G GRGS AGS+ AYAL ITD+DPL+F LLFERFLN DR+ MPD Sbjct: 330 IVWDIVNFAYQNHIQLGAGRGSAAGSLVAYALRITDVDPLQFGLLFERFLNADRVQMPDI 389 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DID+ ++RD V++Y+ +KYG AQI+TFG+L AK ALRD R + + R+ Sbjct: 390 DIDWPDNKRDVVLKYLHDKYGQRNFAQILTFGTLAAKQALRDTARVFGVSQQMMSRISNA 449 Query: 479 IPNDP-AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +P VS+Q A+ ++ LL+++Q++EGL R+ STHAAG+V+ Sbjct: 450 VPTGKQGRKVSIQDALQAGDGLQKVLSEIDDGQLLLKVAQQIEGLPRNYSTHAAGVVLSA 509 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVK 595 L +P+ L +TQF +E GL+K D LGL L++L ++L + Q Sbjct: 510 DTLVHTLPVQSGTDERL-LTQFEKDTVEALGLLKIDVLGLSNLSILAQTLYEARHQLPEH 568 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 D+S +P DD T L T GIFQ ES+G++ L +QP E I+A+ SLYRPGP Sbjct: 569 FDISRVPLDDAATLALYAKGDTNGIFQFESAGIKHVLRQLQPATFEHIVAVNSLYRPGPS 628 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 NI + R++G E + + +L T G+I+YQEQVM +A+ +G +L EADVLR Sbjct: 629 RNIESFIKRRHGLEPVTVPDASLKTILAPTFGIIVYQEQVMLVAEAYAGLTLGEADVLRS 688 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AM KK +M +E+FI+GA G + A IF + +FA+YGFN+SHA AY+ +S+Q Sbjct: 689 AMSKKKLTQMAAMQEKFINGAVALGHDRQEAAQIFAYIDEFANYGFNRSHAVAYSKLSFQ 748 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 A+MK HYP F A + + + EK++ + +A+ +Q+ P +N + V + Sbjct: 749 LAYMKAHYPAAFFTAVLNANLGSPEKVRLYVAEAKARQLQVAAPHINQSQRFWTVNQGVL 808 Query: 836 YYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 L I+G+ T A + E +A+ PF S++ F R+ K R L LV+AGALD F Sbjct: 809 QMGLNNIRGLRTDFVATVLAERTANGPFQSIQSFVRRLPEKFRKRDTLRQLVYAGALDTF 868 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----TLEKFSVENSSV 950 GY+RM+L+ +LD++ E +F D I ++K + + Sbjct: 869 GYNRMELVTALDDLI--------------------EAASFGDLILNETKIKKMPDWDLTE 908 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----SVATIRGNNIRLAAMVVSKQQ 1006 + E+ +G SG+PLD Y ++ Y+E + T + + + A++ + Sbjct: 909 KLAYEKEAIGVNLSGYPLDGYASLIAD---HNYQEIADLTEKTDKKQPVTVIALIDQVRT 965 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 +T+KG + +VT S+ F Sbjct: 966 TRTKKGEEMAFVTVSDATGTTSVTVF 991 >gi|168700398|ref|ZP_02732675.1| DNA polymerase III alpha subunit [Gemmata obscuriglobus UQM 2246] Length = 1617 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 292/793 (36%), Positives = 444/793 (55%), Gaps = 34/793 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + F HL +H+ YSLL+G + ++ + A+AITD NL+ A+EF + GI Sbjct: 2 AKCFCHLHLHTHYSLLDGFNRIQPLVKQTKELGMNAVAITDHGNLYGAIEFYMECKKGGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG + + L ++G+ F T + LL G++ LI+L S YL + + Sbjct: 62 KPIIGYEAYLAPGSRLDRDSKGELGFST--HLTLLAQNETGFKNLIKLSSSAYL-EGFYR 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + RI L E +GLI L+G +G ++ + Q AEK F+K+FG+ ++ +Q Sbjct: 119 NPRIDRQIL-EAHKDGLICLSGCLAGEFNQYIIKDKPQEAEKTAKWFRKVFGENYFIEIQ 177 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV----AHSTVVSQ 242 + G +A +PLVAT ++ +L ED +AHD+L + H + Sbjct: 178 NNGIGLQDQCTPVAADIANRLGVPLVATADAHYLCAEDAQAHDILFCINTRQMHDPRKKK 237 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R+ +++++ +M +F + +A+ + EIA + + L P F E Sbjct: 238 YPEERMPNPYFVRSPEDMYRLFPNYQDAVARSQEIADKVNIDLDFKKRHFPVFTTPE--- 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E LR G+E R +G ++ R+RLD EL +IARM FS YFLIV D Sbjct: 295 -GRTPEQYLRELCERGMEERY------EGKASEAVRKRLDHELGIIARMGFSSYFLIVWD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F+++A++ IP RGSG G++ Y L ++ + P+ + LLFERFL+P+R PD DIDF Sbjct: 348 FVRFAREEGIPC-TARGSGCGAIVCYLLYMSHVCPIEYDLLFERFLDPNRSEAPDIDIDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+ VI YV+ KYG E VAQI TFG+L AKAAL+DVGR L +++ LCKL+P Sbjct: 407 CQDRRELVIDYVKKKYGEESVAQIGTFGTLAAKAALKDVGRVLGQTPDRMNALCKLVPMK 466 Query: 483 PAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 A SLQ D+S F+ DPS+ ++++I+ KLEG R+ HAAG+VI + P++ Sbjct: 467 GAISKSLQEALDESPDFKREYDQDPSIKQVVDIALKLEGANRNVGKHAAGVVIANGPVTN 526 Query: 542 LVPMYR-------DVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 VP+ R D SD TQ+ M +EK GL+K DFLGL+ LT+L + + + Sbjct: 527 YVPVQRPPKKGGSDEGSDDTTTMTTQWEMGILEKVGLLKMDFLGLRNLTVLDNCVKLIKK 586 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 RG+ V+ + P D TY LL G+FQLES G+R+ L+ M+PD I D+IA+++LY Sbjct: 587 TRGITVEPTKFPLTDEATYQLLQRGDAKGVFQLESEGIRELLKRMKPDNIRDLIAVLALY 646 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP++ +V Y KN +++ HP+++ +L ET V++YQEQ+M+I L G L+ Sbjct: 647 RPGPLEGGMVDEYVECKNKRKQPFYPHPVMEEVLSETFAVMVYQEQIMRILNKLGGIELA 706 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 +A +A+ KK E ++ +K F++GA + G+ A IFEL+ KF YGFNK A Sbjct: 707 KAYACIKAISKKNFEIINARKVDFVTGAKERGLEAEKADEIFELIVKFGGYGFNKCVVAG 766 Query: 769 YAVISYQTAWMKT 781 V +T + T Sbjct: 767 TEVTDAETGAVVT 779 Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/267 (34%), Positives = 131/267 (49%), Gaps = 17/267 (6%) Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF---CQDARQFNIQIMP 818 + SH AAYA I YQTA++KTHY E++AA ++ E+D+ K F DAR+ + ++P Sbjct: 1206 HNSHTAAYAQIGYQTAYLKTHYTAEYMAALLSSEIDDGNKRDVFIDHISDARRLGVDVLP 1265 Query: 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877 P VN DF V +NRI + L AIKGVG A I+ A + F L DFC RVD + + Sbjct: 1266 PDVNRGMADFDVLNNRIIFGLTAIKGVGRGAALEIVRARNEGGKFKDLFDFCERVDRRII 1325 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKG 932 + +E ++ AGA D FG Q Q + R + +F A + G Sbjct: 1326 AKAAVEGMIQAGAFDVFGKRSAQFAAVAKAYAVADQRAAEKRKGQ-TGLFDDVEEAADAG 1384 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + +T E ++FE E LGFY S HPL + LR+ + ++ V G Sbjct: 1385 PTNQGLTDVPEWPETERLKFEKE--ALGFYISSHPLAQHDEQLRRF--RTHDCGVLAKGG 1440 Query: 993 NN---IRLAAMVVSKQQKKTRKGSRIG 1016 N R+A M+ + + KG IG Sbjct: 1441 KNGTEARIAGMITNLDVRTANKGRNIG 1467 >gi|262184456|ref|ZP_06043877.1| DNA polymerase III subunit alpha [Corynebacterium aurimucosum ATCC 700975] Length = 1193 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 326/1020 (31%), Positives = 534/1020 (52%), Gaps = 63/1020 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ PA+ +TD N++ + F Q+ + Sbjct: 4 MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVLRQGMPAVGMTDHGNMYGSNAFYQRMTS 63 Query: 65 AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AG++PIIG + L + + N K G TP + +L G + L Sbjct: 64 AGVKPIIGIEAYLAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMLAENETGLRNLF 122 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +L S Q + R+ + E EG+I TG SG + A + Sbjct: 123 KLSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 181 Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ ++G D ++ L H G D R R+ ++++ +LP + TN+ ++ E +H+ Sbjct: 182 WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPSHE 239 Query: 230 VLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287 ++ V DR + +Y+K+ ++M ++ + PEA +NT+ IA R +Q Sbjct: 240 AMLCVQTGKTFMDPDRFKFDGTGYYIKSAAQMRELWDHMVPEACDNTLWIAER----VQD 295 Query: 288 HAPILPRFIEKECDDIQKEE----ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 + I E + L ++ + GL+ R G + Q+Y R ++ Sbjct: 296 YGAIWEEHTHDRMPIADVPEGYTPTSWLTHEVMEGLKDRFNGGDVP-----QEYIDRAEY 350 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LL Sbjct: 351 EISVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLL 410 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R S PD DIDF RR E+I Y ++G ++VAQ+ITFG+++ K A++D + Sbjct: 411 FERFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAK 470 Query: 464 AL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIAD--DSRFREAR------LADPSVDRLL 512 Q + DR+ L P A + L I D R+ EA DP V ++ Sbjct: 471 VHFGQPGFQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIY 530 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 E ++ LEG+ R A HA +++ L +PM++ +T ++ E GL+K D Sbjct: 531 ETARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMD 590 Query: 573 FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLESSGM 628 FLGL+ LT++ L+ + + RG +V L + DD + Y LL+ TLG+FQL+S GM Sbjct: 591 FLGLRNLTVIGDCLENIKKNRGEEVHLEDLHADDPNASKVYDLLSRGDTLGVFQLDSGGM 650 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK--- 683 ++ L+ M+P +DI+A ++LYRPGP ++ Y +RKNG+++I IHP ++ LK Sbjct: 651 QELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEIL 710 Query: 684 -ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 ET G+I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F G NG S Sbjct: 711 DETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMKDNGYS 770 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 K ++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K Sbjct: 771 KEAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKS 830 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861 + D R I+++ P VN F+ I + + AI+ VG I++ +K Sbjct: 831 AIYLADCRHLGIRVLSPDVNESVETFQAVGEDIRFGMGAIRNVGGEVVDSIVKTRREKGA 890 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEK 917 F S D+ +++ ++RV ESL+ AGA D + R L+ ++D++Q + +K Sbjct: 891 FTSFSDYLDKIELAACSKRVTESLIKAGAFDSLEHPRKGLMLIHEDAVDSVQTTKKAADK 950 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPIL 975 + + ++G ++ EN + E E+ +LG Y SGHPLD ++ L Sbjct: 951 GQFDLFAGFGGDDQGDSVSAFAID-IPEENWDRKHELALEREMLGLYVSGHPLDGFEEAL 1009 >gi|257877689|ref|ZP_05657342.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC20] gi|257811855|gb|EEV40675.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC20] Length = 1103 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 331/1051 (31%), Positives = 545/1051 (51%), Gaps = 100/1051 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S+YSLL+ + + + +++ + +TD N L+ A+EF Q+ A GI+PI Sbjct: 2 YSQLTTLSAYSLLQSTIKIPHYIEQAKKMGYQTLGLTDHNVLYGAVEFYQQCLAQGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G D +G FP + + +GYQ L+ L S + +Q + Sbjct: 62 FGALFDCTF-------GEGSMSFP----LYVFAKNLKGYQTLMRLSSEKMITEQLNLAAC 110 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 L L + EG L ++Q A + + K + L++ + + Sbjct: 111 DSLQDLFGLLPEGEGFLPSQHDD-------LEANQEALRAI--SHKFDSESLFLGITS-K 160 Query: 191 GYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QK 243 G D + E + AY P+ A L++E+ A V+M + + + ++ Sbjct: 161 GLDPETIAWFNEQNIAPCAYQ---PIAA------LAQEEAFAVKVMMHIKEGSQIEDFRQ 211 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKEC 300 + + +L+ ++ + F + +AL N IA C+ L +H +LP + E+ Sbjct: 212 AKEQGAAQLFLQPADQLTAAFEEWSQALMNNQRIAAECAVELPLHQRLLPHYPLPAEESA 271 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D LR L R+A A Y QRLD+EL+VI +M F YFLI+ Sbjct: 272 ADY-------LRKICFERLPQRVAHVTSA-------YEQRLDYELSVIHKMGFDDYFLII 317 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + +A + I G GRGS AG++ AY L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 318 WDVMDFAHQQEIVTGAGRGSAAGALVAYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 377 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RRDE+++YV+ KYG E +AQI TFG++ AK LRDV R + S+ +R K IP Sbjct: 378 DIPDNRRDEILQYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIP 437 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + L A ++ RE + + ++++ LEGL RH STHAAG+VI D+ L Sbjct: 438 NALKMTLDL-AYEQSNQLRELVSFNERNHVMFQVAKILEGLPRHVSTHAAGVVISDKNLL 496 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 LVP+ ++ + +TQF M +E GL+K DFLGL+ L+++ +L +G+K Sbjct: 497 DLVPL-QEGSDGIWLTQFTMNDVEAIGLLKMDFLGLRNLSIIDNTL-----KGIKRISQQ 550 Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V IP DD T L T GIFQ ES+G+R L + P+ IEDI A+ +LYRPGP Sbjct: 551 IVTQKEIPLDDPATLRLFQKGETAGIFQFESAGIRNVLRKLGPESIEDIAAVNALYRPGP 610 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + NI + RK G+E++ + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LR Sbjct: 611 MQNIDTFIKRKKGQERVSYPDDSLIPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILR 670 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RA+ KK K+ +D+++ F+ GA N + A +++ + +FA+YGFN+SHA AY+ I + Sbjct: 671 RAISKKKKDVLDEERRHFVQGALANQYDEKTANLVYDYIERFANYGFNRSHAFAYSFIGF 730 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833 Q A++K HYP F A+ + + K+K++ +A ++ ++++PPS+N F++ + Sbjct: 731 QMAYLKVHYPAPFFASILHSVRNTASKMKEYLNEAARYGVEVLPPSINASGFSFQLQNEK 790 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAG 889 +I + ++IKG+ + I+ E F S++ F R+ +SK L L L+ G Sbjct: 791 QIRFGFSSIKGIRRDMIQDILAERKQHGNFTSMDQFLLRLNQRNSKWLKLDYLLPLLSIG 850 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 D +R Q L L+ K +NI + G+ LE +++ + Sbjct: 851 VFDVIAPNRKQALIQLE--------------GKIQNI-TYSGGSLD---LLETMALKEEA 892 Query: 950 V-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V + E+ LG Y SGHP++ ++ + + I + V R +R+ V Sbjct: 893 VADYKLEEKLALEEEYLGVYLSGHPVEQFQKLHQLKQITDIADLVPNER---VRILLYVR 949 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ +T+KG ++ +V ++ +KE FP Sbjct: 950 KIREIRTKKGEQMAFVEGTDASKEVSVTIFP 980 >gi|325571261|ref|ZP_08146761.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus casseliflavus ATCC 12755] gi|325155737|gb|EGC67933.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus casseliflavus ATCC 12755] Length = 1103 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 331/1050 (31%), Positives = 547/1050 (52%), Gaps = 98/1050 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S+YSLL+ + + + +++ + +TD N L+ A+EF Q+ A GI+PI Sbjct: 2 YSQLTTLSAYSLLQSTIKIPHYIEQAKKMGYQTLGLTDHNVLYGAVEFYQQCLAQGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G D +G FP + + +GYQ L+ L S + +Q + Sbjct: 62 FGALFDCTF-------GEGSMSFP----LYVFAKNLKGYQTLMRLSSEKMITEQLNLAAC 110 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 L L + EG L ++Q A + + K + L++ + + Sbjct: 111 DSLQDLFGLLPEGEGFLPSQHDD-------LEANQEALRAI--SHKFDSESLFLGI-TSK 160 Query: 191 GYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QK 243 G D + E + AY P+ A L++E+ A V+ + + + ++ Sbjct: 161 GLDPETIAWFNEQNIAPCAYQ---PIAA------LAQEEAFAVKVMTHIKDGSQIEDFRQ 211 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + + T +L+ ++ + F + +AL N IA C+ L +H +LP + + Sbjct: 212 AKEQATTQLFLQPADQLTASFGEASQALMNNQRIAAECAVELPLHQRLLPHY------PL 265 Query: 304 QKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 +EE + LR L R+A A Y QRLD+EL+VI +M F YFLI+ Sbjct: 266 AQEESAADYLRKICFERLPQRVAHVTSA-------YEQRLDYELSVIHKMGFDDYFLIIW 318 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A + I G GRGS AG++ AY L+ITD+DP+++ LLFERFLNP+R +MPD D+D Sbjct: 319 DVMDFAHQQEIVTGAGRGSAAGALVAYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLD 378 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 +RRDE+++YV+ KYG E +AQI TFG++ AK LRDV R + S+ +R K IPN Sbjct: 379 IPDNRRDEILQYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIPN 438 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + L A ++ RE + + ++++ LEGL RH STHAAG+VI D+ L Sbjct: 439 ALKMTLDL-AYEQSNQLRELVSFNERNQVMFQVAKILEGLPRHVSTHAAGVVISDKNLLD 497 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------ 595 LVP+ ++ + +TQF M +E GL+K DFLGL+ L+++ +L +G+K Sbjct: 498 LVPL-QEGSDGIWLTQFTMNDVEAIGLLKMDFLGLRNLSIIDNTL-----KGIKRISQQI 551 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 V IP DD T L T GIFQ ES+G+R L + P+ IEDI A+ +LYRPGP+ Sbjct: 552 VTQKEIPLDDPATLRLFQKGETAGIFQFESAGIRNVLRKLGPESIEDIAAVNALYRPGPM 611 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 NI + RK G+E++ + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRR Sbjct: 612 QNIDTFIKRKKGQERVSYPDDSLIPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILRR 671 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 A+ KK K+ +D+++ F+ GA N + A +++ + +FA+YGFN+SHA AY+ I +Q Sbjct: 672 AISKKKKDVLDEERRHFVQGALANHYDEKTANLVYDYIERFANYGFNRSHAFAYSFIGFQ 731 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 A++K HYP F A+ + + K+K++ +A ++ ++++PPS+N F++ + + Sbjct: 732 MAYLKVHYPAPFFASILHSVRNTASKMKEYLNEAARYGVEVLPPSINASGFSFQLQNEKQ 791 Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890 I + ++IKG+ + I+ E F S++ F R+ +SK L L L+ G Sbjct: 792 IRFGFSSIKGIRRDMIQDILAERKEHGNFTSMDQFLLRLNQRNSKWLKLDYLLPLLSIGV 851 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 D +R Q L L+ K +NI + G+ LE +++ +V Sbjct: 852 FDGIAPNRKQALIQLE--------------GKIQNI-TYSGGSLD---LLETMALKEEAV 893 Query: 951 -------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + E+ LG Y SGHP++ ++ + + I + V R +R+ V Sbjct: 894 ADYKLEEKLALEEEYLGVYLSGHPVEQFQKLHQLKQITDIADLVPNER---VRILLYVRK 950 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ +T+KG ++ +V ++ +KE FP Sbjct: 951 IREIRTKKGEQMAFVEGTDASKEVSVTIFP 980 >gi|227833468|ref|YP_002835175.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC 700975] gi|227454484|gb|ACP33237.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC 700975] Length = 1190 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 326/1020 (31%), Positives = 534/1020 (52%), Gaps = 63/1020 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ PA+ +TD N++ + F Q+ + Sbjct: 1 MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVLRQGMPAVGMTDHGNMYGSNAFYQRMTS 60 Query: 65 AGIQPIIGCQ--LDIDMQDNLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLI 113 AG++PIIG + L + + N K G TP + +L G + L Sbjct: 61 AGVKPIIGIEAYLAPESRFNKKRVLWG-TPDQKRDDVSASGAYLHQTMLAENETGLRNLF 119 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +L S Q + R+ + E EG+I TG SG + A + Sbjct: 120 KLSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFNEALEAAAM 178 Query: 174 FKKLFG-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ ++G D ++ L H G D R R+ ++++ +LP + TN+ ++ E +H+ Sbjct: 179 WQDIYGKDNFFLELMDH-GLDIEKRTRDG-LLEIGRKLDLPPLVTNDCHYVLESQAPSHE 236 Query: 230 VLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQV 287 ++ V DR + +Y+K+ ++M ++ + PEA +NT+ IA R +Q Sbjct: 237 AMLCVQTGKTFMDPDRFKFDGTGYYIKSAAQMRELWDHMVPEACDNTLWIAER----VQD 292 Query: 288 HAPILPRFIEKECDDIQKEE----ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 + I E + L ++ + GL+ R G + Q+Y R ++ Sbjct: 293 YGAIWEEHTHDRMPIADVPEGYTPTSWLTHEVMEGLKDRFNGGDVP-----QEYIDRAEY 347 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LL Sbjct: 348 EISVIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLL 407 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R S PD DIDF RR E+I Y ++G ++VAQ+ITFG+++ K A++D + Sbjct: 408 FERFLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAK 467 Query: 464 AL--QMPYSQVDRL-CKLIPNDPAHPVSLQAIAD--DSRFREAR------LADPSVDRLL 512 Q + DR+ L P A + L I D R+ EA DP V ++ Sbjct: 468 VHFGQPGFQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIY 527 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 E ++ LEG+ R A HA +++ L +PM++ +T ++ E GL+K D Sbjct: 528 ETARGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMD 587 Query: 573 FLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD---HETYHLLTTKGTLGIFQLESSGM 628 FLGL+ LT++ L+ + + RG +V L + DD + Y LL+ TLG+FQL+S GM Sbjct: 588 FLGLRNLTVIGDCLENIKKNRGEEVHLEDLHADDPNASKVYDLLSRGDTLGVFQLDSGGM 647 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLK--- 683 ++ L+ M+P +DI+A ++LYRPGP ++ Y +RKNG+++I IHP ++ LK Sbjct: 648 QELLKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEIL 707 Query: 684 -ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 ET G+I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F G NG S Sbjct: 708 DETYGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMKDNGYS 767 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 K ++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K Sbjct: 768 KEAMDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKS 827 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-P 861 + D R I+++ P VN F+ I + + AI+ VG I++ +K Sbjct: 828 AIYLADCRHLGIRVLSPDVNESVETFQAVGEDIRFGMGAIRNVGGEVVDSIVKTRREKGA 887 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL----QSLDNIQKYAQWVEK 917 F S D+ +++ ++RV ESL+ AGA D + R L+ ++D++Q + +K Sbjct: 888 FTSFSDYLDKIELAACSKRVTESLIKAGAFDSLEHPRKGLMLIHEDAVDSVQTTKKAADK 947 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE--NEQRVLGFYFSGHPLDVYKPIL 975 + + ++G ++ EN + E E+ +LG Y SGHPLD ++ L Sbjct: 948 GQFDLFAGFGGDDQGDSVSAFAID-IPEENWDRKHELALEREMLGLYVSGHPLDGFEEAL 1006 >gi|257867601|ref|ZP_05647254.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC30] gi|257873931|ref|ZP_05653584.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC10] gi|257801657|gb|EEV30587.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC30] gi|257808095|gb|EEV36917.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC10] Length = 1103 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 330/1051 (31%), Positives = 546/1051 (51%), Gaps = 100/1051 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S+YSLL+ + + + +++ + +TD N L+ A+EF Q+ A GI+PI Sbjct: 2 YSQLTTLSAYSLLQSTIKIPHYIEQAKKMGYQTLGLTDHNVLYGAVEFYQQCLAQGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G D +G FP + + +GYQ L+ L S + +Q ++ Sbjct: 62 FGALFDCTF-------GEGSMSFP----LYVFAKNLKGYQTLMRLSSEKMITEQ--LNLA 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 C S G +L G + ++Q A + + K + L++ + + Sbjct: 109 ACDSLQDLFG-----LLPEGEGFLPSQHDDLEANQEALRAI--SHKFDSESLFLGI-TSK 160 Query: 191 GYDR-----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QK 243 G D + E + AY P+ A L++E+ A V+ + + + ++ Sbjct: 161 GLDSETIAWFNEQNIAPCAYQ---PIAA------LAQEEAFAVKVMTHIKEGSQIEDFRQ 211 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKEC 300 + + +L+ ++ + F + +AL N IA C+ L +H +LP + E+ Sbjct: 212 AKEQGAAQLFLQPADQLTAAFEEWSQALMNNQRIAAECAVELPLHQRLLPHYPLPAEESA 271 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D LR L R+A A Y QRLD+EL+VI +M F YFLI+ Sbjct: 272 ADY-------LRKICFERLPQRVAHVTSA-------YEQRLDYELSVIHKMGFDDYFLII 317 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D + +A + I G GRGS AG++ AY L+ITD+DP+++ LLFERFLNP+R +MPD D+ Sbjct: 318 WDVMDFAHQQEIVTGAGRGSAAGALVAYVLSITDVDPIKYDLLFERFLNPERYTMPDIDL 377 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D +RRDE+++YV+ KYG E +AQI TFG++ AK LRDV R + S+ +R K IP Sbjct: 378 DIPDNRRDEILQYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIP 437 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 N + L A ++ RE + + ++++ LEGL RH STHAAG+VI D+ L Sbjct: 438 NALKMTLDL-AYEQSNQLRELVSFNERNQVMFQVAKILEGLPRHVSTHAAGVVISDKNLL 496 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 LVP+ ++ + +TQF M +E GL+K DFLGL+ L+++ +L +G+K Sbjct: 497 DLVPL-QEGSDGIWLTQFTMNDVEAIGLLKMDFLGLRNLSIIDNTL-----KGIKRISQQ 550 Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V IP DD T L T GIFQ ES+G+R L + P+ IEDI A+ +LYRPGP Sbjct: 551 IVTQKEIPLDDPATLRLFQKGETAGIFQFESAGIRNVLRKLGPESIEDITAVNALYRPGP 610 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + NI + RK G+E++ + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LR Sbjct: 611 MQNIDTFIKRKKGQERVSYPDDSLIPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILR 670 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RA+ KK K+ +D+++ F+ GA N + A +++ + +FA+YGFN+SHA AY+ I + Sbjct: 671 RAISKKKKDVLDEERRHFVQGALANQYDEKTANLVYDYIERFANYGFNRSHAFAYSFIGF 730 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833 Q A++K HYP F A+ + + K+K++ +A ++ ++++PPS+N F++ + Sbjct: 731 QMAYLKVHYPAPFFASILHSVRNTASKMKEYLNEAARYGVEVLPPSINASGFSFQLQNEK 790 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAG 889 +I + ++IKG+ + I+ E F S++ F R+ +SK L L L+ G Sbjct: 791 QIRFGFSSIKGIRRDMIQDILAERKEHGNFTSMDQFLLRLNQRNSKWLKLDYLLPLLSIG 850 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 D +R Q L L+ K +NI + G+ LE +++ + Sbjct: 851 VFDGIAPNRKQALIQLE--------------GKIQNI-TYSGGSLD---LLETMALKEEA 892 Query: 950 V-------RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 V + E+ LG Y SGHP++ ++ + + I + V R +R+ V Sbjct: 893 VADYKLEEKLALEEEYLGVYLSGHPVEQFQKLHQLKQITDIADLVPNER---VRILLYVR 949 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ +T+KG ++ +V ++ +KE FP Sbjct: 950 KIREIRTKKGEQMAFVEGTDASKEVSVTIFP 980 >gi|298528545|ref|ZP_07015949.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298512197|gb|EFI36099.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 782 Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust. Identities = 288/801 (35%), Positives = 451/801 (56%), Gaps = 33/801 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL H+ YSL EG + + + K A + PA++ITD+ NL+ A++ A GI+PI Sbjct: 4 FAHLHCHTEYSLFEGCIRIEELCSKAAEYKMPAVSITDSGNLYGAMKLYSAAREYGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129 IGC++++ K+T++ K + +VLL GY L++LVS +L QG Sbjct: 64 IGCEINLVPG---KVTDRDKFNY----HLVLLAMDLRGYHNLVKLVSAGWL--QGFYYKP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPID---RAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ LQ+ ++G+I L+ G + RA F+ A + + +++ DR Y+ L Sbjct: 115 RVDKDMLQKY-SDGIIALSACLKGEVQYLLRAKGFDQGLEAA---MQYARIYPDRFYLEL 170 Query: 187 QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + GY+ E ++++L+ LP+VA N+ +L+ +D EAH VL + ++ + ++D Sbjct: 171 EA-SGYNEQAEVNDRLMELSEKTGLPIVAANDCRYLTPQDAEAHAVLKCIKNAERLDEQD 229 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + T + Y K+ EM FS P ALEN +I +C+ L LPR+ D + Sbjct: 230 LDNLDTRELYFKSPEEMEKEFSYCPTALENVHKIVEQCNLDLDSPKRHLPRYKPTIEDTL 289 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 KE L A+ GL+ +LA + + Y RLD EL ++ S YFL+V D+ Sbjct: 290 DKE----LTALALNGLDEKLA--TLPYKVDREKYFTRLDKELKILCEQGKSWYFLVVYDY 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 + WA+ I VGPGRGS G +TAYAL IT IDP+ L FERF N R + D D+D C Sbjct: 344 VAWARSRGIAVGPGRGSAPGCMTAYALGITGIDPILHKLHFERFCNTKRAGVVDIDVDLC 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RR EV YV KYG V I F ++A+ RDV + + Q +R+ +LIP +P Sbjct: 404 QERRQEVFDYVFEKYGQNSVVYISVFICMRARTVFRDVSLVIGISPEQAERIIQLIPQEP 463 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +S +A+ + R + + R +I +LEGL RH ++HAA IVI + L + Sbjct: 464 GMTIS-KAMEMEPALRSIMNDNEKMQRCFDICTRLEGLIRHITSHAARIVISNENLQDYL 522 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602 P+YR +L + Q++ +E+ G FD LGLK L+L+ ++LD + A + D+ +P Sbjct: 523 PLYRGRNHEL-IAQYDYNDLERLGFPGFDLLGLKYLSLISRTLDLIKASQKQAPDMDSLP 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +T+ L+ T G FQLE G RQ L ++P+ +ED+ A+++LYRPGP+ + ++ N Sbjct: 582 LDDAKTFVLIEQGHTDGAFQLEGDGFRQYLRELKPERLEDLAAMLALYRPGPLVSGMLSN 641 Query: 663 --NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 R++G+ H + +LKET G+IIY EQVM IA ++G+SL +A++L + + K Sbjct: 642 FIKRRHGRVAAEYAHAELADILKETHGMIIYHEQVMTIAHKIAGFSLEDAEILAKNLVGK 701 Query: 721 IKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 E + +QKE+FI GA KN + A IF+++ + YG+ K+H+ AYA+ISYQTA++ Sbjct: 702 KPEALIQQKEKFIKGAMQKNNVPVKTAEQIFDMMKQAGPYGYLKAHSIAYAMISYQTAFL 761 Query: 780 KTHYPVEFLAASMTLEMDNVE 800 K +YP EF A T+ N++ Sbjct: 762 KANYPEEFQQAKDTVFGKNMK 782 >gi|227432231|ref|ZP_03914227.1| possible DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352004|gb|EEJ42234.1| possible DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1112 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 275/733 (37%), Positives = 424/733 (57%), Gaps = 40/733 (5%) Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 L AV+GL+ RL ++ Y +RL EL I + FS YFLIV D + +A KN Sbjct: 283 LEKIAVSGLKKRLQGHNVSLNL----YEERLQHELKTIEVLGFSDYFLIVWDIVNFAHKN 338 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ AY+L ITD+DPL+F+LLFERFLN +R+ MPD DID+ +R+E+ Sbjct: 339 HIQTGPGRGSVAGSLVAYSLQITDVDPLQFNLLFERFLNDERVQMPDIDIDWPPSKREEL 398 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSL 489 Y+ KYG QIITFG+L +K ALRDVGR +P + +L IP VS+ Sbjct: 399 FTYLHQKYGKRNFGQIITFGTLASKQALRDVGRVFGLPTPTLSKLSASIPEGKNGRKVSI 458 Query: 490 QAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + A L D RLL + + K+EGL ++ STHAAGIV+ PL Q +P+ Sbjct: 459 DDALKAPQLQNA-LRDIDNGRLLLQTALKIEGLPKNYSTHAAGIVLSANPLVQTLPVQSG 517 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--KVDLSLIPFDDH 606 L +TQF +E+ GL+K D LGL+ L +L ++L + AQ+ + + D++ I DD Sbjct: 518 TEGRL-LTQFEKDPVEQLGLLKIDILGLQNLAILSQAL-YYAQKELPERFDITKIVLDDA 575 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T G+FQ ES+G++ L ++P E I+A+ +LYRPGP NI + R++ Sbjct: 576 KTLALFAKGDTNGVFQFESAGIKNVLRKLKPATFEHIVAVNALYRPGPAQNIDKFIARRH 635 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKE + P + +L T G+I+YQEQVM +A+ +G++L EADVLR AM KK ++M Sbjct: 636 GKEAVTISDPSLKSILALTFGIIVYQEQVMLVAESYAGFTLGEADVLRSAMSKKKVDKMQ 695 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K E+FI GA KNG + A IF + +FA+YGFN+SHA AY+ ++++ A++K HYPV Sbjct: 696 KLHEQFIKGALKNGHDQEQAELIFSYIDEFANYGFNRSHAVAYSKLAFELAYLKAHYPVA 755 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A + + +K++++ +A+ I ++ P VN + +N++ L I+GV Sbjct: 756 FFTALLNANLGEQKKVQQYVSEAKIRGIVVLAPDVNKSYKFWTSIENQLQMGLNNIRGVR 815 Query: 847 TTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 T ++E + F +++ F R+ K R VLE LV+AGALD FGY+R +L++++ Sbjct: 816 TDFVTSVLEERQNNGSFQTIQSFVRRLPDKMRKREVLEQLVYAGALDSFGYNRRELIENI 875 Query: 906 DNIQKYAQW----VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 ++ + A + +E+ + K+++ FA SD R + E+ V+G Sbjct: 876 ASLIEGASFGNLILEETKIKKYDD-FA-----LSD--------------RLKKEKEVIGV 915 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020 SGHPLD Y + + G+ + ++ + + ++ A+V S +Q +T+KG + +V Sbjct: 916 NLSGHPLDTYVDFILE---NGFSQIGNVVQPSQVEKIIAIVDSIRQIRTKKGDDMAFVKV 972 Query: 1021 SEPAKEYEANFFP 1033 S+ E FP Sbjct: 973 SDTTGEISVTIFP 985 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 10/107 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQ+ SSYSLL+ ++ I+ AIA+ D N ++ A+E+ ++ GI+P+ Sbjct: 2 YAPLQILSSYSLLKNPNTIEQIVQTAKTRGYEAIALADVNVMYGAIEWFRQTKKHGIKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 G L M + L T T FP +VLL GYQ L+ L S Sbjct: 62 FGLTL---MVNGLVNT---ATLFP----VVLLAENQVGYQNLMWLSS 98 >gi|116492856|ref|YP_804591.1| DNA polymerase III catalytic subunit, DnaE type [Pediococcus pentosaceus ATCC 25745] gi|116103006|gb|ABJ68149.1| DNA polymerase III catalytic subunit, DnaE type [Pediococcus pentosaceus ATCC 25745] Length = 1107 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 321/1042 (30%), Positives = 552/1042 (52%), Gaps = 75/1042 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV LQV SSYSLL + +++++ A+ +TD N ++ +EF Q ++P Sbjct: 2 AFVPLQVLSSYSLLSSPIKIDDLIATAKNRGYQAMTLTDHNTMYGTVEFYQACIKNNLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RM------YLL 122 I+G L +D T ++VL+ + +GY+ L+++ S +M ++ Sbjct: 62 IVGLTLWLD----------STTGIDNQFALVLIAKSVKGYRNLMQISSAKMTSSTPKFVF 111 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR- 181 D K + + + +E + +L G SG A + L ++++ GD Sbjct: 112 DDIKDLLDDLIMIVPAQRSEMIELLERGLSGD------------ATELLENYRQVVGDED 159 Query: 182 --LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 L +NL++ ++Q+A H L + + +L+ ED+ A VL +A V Sbjct: 160 LYLGINLKQ----TNIMRQTLMQIAEKHSLGCLPLPSVEYLNSEDHFATQVLKDIASGEV 215 Query: 240 VSQKD-RPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFI 296 + + + +++LK R + D L E L+ + + + P LP+F Sbjct: 216 IKHPEILAKDQGNNWLKPRDVFEKEYRDAGLSELLDQLDALTSQIELKIPFVQPKLPKFP 275 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARMKFS 354 N++ L + K +AQ+ Y+QRLD ELNVI M F+ Sbjct: 276 TPA-------------NQSAIQYLKELCFQQLEKSKNAQNLQYQQRLDRELNVIESMGFA 322 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFLIV D +Q+A +N+I GPGRGS AGS+ AY L IT +DP+ + LLFERFLNP+R Sbjct: 323 DYFLIVHDVVQFAHQNHILTGPGRGSAAGSLVAYLLRITSVDPIEYGLLFERFLNPERAQ 382 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-QMPYSQVD 473 MPD D+D D+R+ +++YV +KYGH+ V QIITFG+L AK A+RDV R +MP ++++ Sbjct: 383 MPDIDLDIPDDKRELMLKYVHDKYGHQHVGQIITFGTLAAKQAIRDVARVFGEMP-NKIN 441 Query: 474 RLCKLIPNDPAHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 ++ LIP++ ++L+ A+ + S+ +E + E +++LEGL RH STHAAGI Sbjct: 442 QISALIPSELN--ITLERALENSSKLQEFIRTSEKNRFMFETARRLEGLPRHYSTHAAGI 499 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 V+ + L++ P+ +D + ++Q++ ++E+ GL+K DFLGL+ L+L+ LD + Q Sbjct: 500 VLSENNLTETTPV-QDGNEGMLMSQYSKNYVERVGLLKMDFLGLRNLSLMANILDQVHQL 558 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D+ I +D +T L T GIFQ ES+G+R L ++PD ++A+ +LYRP Sbjct: 559 KPDFDIENINLNDTKTLELFQRGDTSGIFQFESAGIRNVLRKVKPDRFGLVVAVNALYRP 618 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP++NI + RK +E + ++ +L ET G+++YQEQVM++A + G SL +AD+ Sbjct: 619 GPMENIDRFVKRKEHREHYSFPNDVLSEILGETFGILVYQEQVMEVASAMGGLSLGQADL 678 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAM KK + +++ + FI GA + G + + ++ + FA+YGFNKSHA AY+ + Sbjct: 679 LRRAMSKKKHDVIEQMRTNFIDGALQKGYNAKLTQQVYSYIENFANYGFNKSHAVAYSKL 738 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 ++Q A++KT++P F A + + K K++ Q+ + I++ P +N + + Sbjct: 739 AFQLAYLKTYFPGPFYTALLNSVIGGEAKTKEYIQELNRLGIKVKAPDINLSQLQYAFYQ 798 Query: 833 NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +I +IKG+ R+++E ++ F S++ R+ K + ++E L+F+G L Sbjct: 799 QQIIMGFLSIKGLRRDFIRNLIEERQSNGEFKSVDSLLRRMRDKGITEEIIEKLIFSGTL 858 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D FGY+R +L L + K + +N ++F T + ++ + Sbjct: 859 DSFGYNRAELGDFLPELLKGIAFSGQNV-----DLFEKLMPTIKHRPDMD------LDEK 907 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + E+ +LG Y S HP++ Y ++ + G K +E + I + S + +T+K Sbjct: 908 LDWEEELLGTYISAHPVERYANLIEQNGFKKIDEFSDEAQVTTI---VYIRSIRTIRTKK 964 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G + + ++P E EA FP Sbjct: 965 GESMAFANITDPTGESEAVIFP 986 >gi|270291308|ref|ZP_06197530.1| DNA polymerase III subunit alpha [Pediococcus acidilactici 7_4] gi|270280154|gb|EFA25990.1| DNA polymerase III subunit alpha [Pediococcus acidilactici 7_4] Length = 1112 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 320/1036 (30%), Positives = 547/1036 (52%), Gaps = 59/1036 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L V SSYSLL + ++ A+A+TD N ++ A+EF Q ++P Sbjct: 3 AFVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKNDLKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G L I + + NQ ++VLL GY L+ + S K ++ Sbjct: 63 IVG--LTIWLDSTRGIDNQF--------ALVLLAKNINGYHNLLRISSAKMTEISAKPTL 112 Query: 130 R---ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVN 185 + W + L+++ ++ + A+ + +++ + L++ Sbjct: 113 TFNDLRAYW------KDLVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDLFLG 166 Query: 186 LQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + + + R +Q+ Q A LPL + +L+EED+ A VL + V+ + Sbjct: 167 INGQQSHVMRQTLTQMAQKAGIGCLPLPSVE---YLNEEDHFATQVLRDIDSGKVLQHPE 223 Query: 245 R-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI---LQVHAPILPRFIEKEC 300 + +++LK +E V + L +A E ++ R + I + + +P LP+F Sbjct: 224 LLAKGGGNNWLKPATEFVREYGQLGDA-EMLTQLDRVVAGINLEIPIVSPRLPQFATPNQ 282 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D +L +A+ L+ + A+ Y+ RLD EL VI M F+ YFLI+ Sbjct: 283 QD-SFTYLTQLCQQALTQLKENVPD--------AERYQARLDHELAVIKEMGFADYFLII 333 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D +Q+A + I GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP+R MPD D+ Sbjct: 334 HDVVQFAHQKQILTGPGRGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPDIDL 393 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-QMPYSQVDRLCKLI 479 D D+R+ V++YV ++YGH+ V QIITFG+L AK A+RDV R +MP ++++++ LI Sbjct: 394 DIPDDQREVVLQYVHDRYGHQHVGQIITFGTLAAKQAIRDVARVFGEMP-NKINQISALI 452 Query: 480 PNDPAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 PN ++L+ A S R R+ + P + E + +LEGL RH STHAAGIV+ Sbjct: 453 PNKLN--ITLKQAAQTSHRLRDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLSQDE 510 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 L + VP+ +D + ++Q++ ++E+ GL+K DFLGL+ L+L+ L+ + + + ++ Sbjct: 511 LVESVPV-QDGNEGMLMSQYSKNFVEQVGLLKMDFLGLRNLSLMNNILELVHRTEPQFEI 569 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I +D +T L T G+FQ ES+G+R L + P ++A+ +LYRPGP++NI Sbjct: 570 EKIELNDPQTLQLFQWGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPMENI 629 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+ E + +++ +L ET G+++YQEQVM++A + G SL +AD+LRRAM Sbjct: 630 DRFVKRKDHLEPYRFPNQILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRRAMS 689 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK +++ + FI GA + G S+ IA ++ + FA+YGFNKSHA AY+ +++Q A+ Sbjct: 690 KKKHAVIEQMRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQLAY 749 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYP +F A + + N K K + Q+ ++ I + P +N + + +I Sbjct: 750 LKAHYPGDFYTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYTYQNGQIRMG 809 Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 AIKG+ +H++ E F +++D+ R+ ++ ++ V++ L+FAGALD FGY+ Sbjct: 810 FTAIKGLRRDFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSFGYN 869 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R +L + L + K + +N ++F T + L + + E+ Sbjct: 870 RAELDEYLPELLKGITFSGQNV-----DLFQKLMPTIKSRPDLP------LDEKLDREEE 918 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +LG Y S HP++ + ++++ ++ A G + + S + +T+KG + + Sbjct: 919 LLGTYVSAHPVERFAELIKQRRFVQIQQFKA---GEKVTSIVYIRSIRSIRTKKGEPMAF 975 Query: 1018 VTFSEPAKEYEANFFP 1033 S+ E EA FP Sbjct: 976 AKISDQTDECEAVIFP 991 >gi|116617885|ref|YP_818256.1| DNA polymerase III catalytic subunit, DnaE type [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096732|gb|ABJ61883.1| DNA polymerase III catalytic subunit, DnaE type [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 1112 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 275/733 (37%), Positives = 423/733 (57%), Gaps = 40/733 (5%) Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 L AV+GL+ RL ++ Y +RL EL I + FS YFLIV D + +A KN Sbjct: 283 LETIAVSGLKKRLQGHNVSLNL----YEERLQHELKTIEVLGFSDYFLIVWDIVNFAHKN 338 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ AY+L ITD+DPL+F+LLFERFLN +R+ MPD DID+ +R+E+ Sbjct: 339 HIQTGPGRGSVAGSLVAYSLQITDVDPLQFNLLFERFLNDERVQMPDIDIDWPPSKREEL 398 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSL 489 Y+ KYG QIITFG+L +K ALRDVGR +P + +L IP VS+ Sbjct: 399 FTYLHQKYGKRNFGQIITFGTLASKQALRDVGRVFGLPTPTLSKLSASIPEGKNGRKVSI 458 Query: 490 QAIADDSRFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + A L D RLL + + K+EGL ++ STHAAGIV+ PL Q +P+ Sbjct: 459 DDALKAPQLQNA-LRDIDNGRLLLQTALKIEGLPKNYSTHAAGIVLSANPLVQTLPVQSG 517 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--VDLSLIPFDDH 606 L +TQF +E+ GL+K D LGL+ L +L ++L + AQ+ + D++ I DD Sbjct: 518 TEGRL-LTQFEKDPVEQLGLLKIDILGLQNLAILSQAL-YYAQKELPEGFDITKIALDDA 575 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T G+FQ ES+G++ L ++P E I+A+ +LYRPGP NI + R++ Sbjct: 576 KTLALFAKGDTNGVFQFESAGIKNVLRKLKPATFEHIVAVNALYRPGPAQNIDKFIARRH 635 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKE + P + +L T G+I+YQEQVM +A+ +G++L EADVLR AM KK ++M Sbjct: 636 GKEAVTIPDPSLKSILAPTFGIIVYQEQVMLVAESYAGFTLGEADVLRSAMSKKKVDKMQ 695 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K E+FI GA KNG + A IF + +FA+YGFN+SHA AY+ ++++ A++K HYPV Sbjct: 696 KLHEQFIKGALKNGHDQEQAELIFSYIDEFANYGFNRSHAVAYSKLAFELAYLKAHYPVA 755 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A + + +K++++ +A+ I ++ P VN + +N++ L I+GV Sbjct: 756 FFTALLNANLGEQKKVQQYVSEAKIRGIVVLAPDVNKSYKFWTSIENQLQMGLNNIRGVR 815 Query: 847 TTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 T ++E + F +++ F R+ K R VLE LV+AGALD FGY+R +L++++ Sbjct: 816 TDFVTGVLEERQNNGSFQTIQSFVRRLPDKMRKREVLEQLVYAGALDSFGYNRRELIENI 875 Query: 906 DNIQKYAQW----VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 ++ + A + +E+ + K+++ FA SD R + E+ V+G Sbjct: 876 ASLIEGASFGNLILEETKIKKYDD-FA-----LSD--------------RLKKEKEVIGV 915 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020 SGHPLD Y + + G+ + ++ + + ++ A+V S +Q +T+KG + +V Sbjct: 916 NLSGHPLDTYVDFILE---NGFSQIGNVVQPSQVEKIIAIVDSIRQIRTKKGDDMAFVKV 972 Query: 1021 SEPAKEYEANFFP 1033 S+ E FP Sbjct: 973 SDTTGEISVTIFP 985 Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 10/107 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQ+ SSYSLL+ ++ I+ AIA+ D N ++ A+++ ++ GI+P+ Sbjct: 2 YAPLQILSSYSLLKNPNTIEQIVQTAKTRGYEAIALADVNVMYGAIDWFRQTKKHGIKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 G L M + L T T FP +VLL GYQ L+ L S Sbjct: 62 FGLTL---MVNGLVNT---ATLFP----VVLLAENQVGYQNLMWLSS 98 >gi|288803004|ref|ZP_06408440.1| DNA polymerase III, alpha subunit [Prevotella melaninogenica D18] gi|288334521|gb|EFC72960.1| DNA polymerase III, alpha subunit [Prevotella melaninogenica D18] Length = 871 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 302/857 (35%), Positives = 452/857 (52%), Gaps = 87/857 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65 +VHL VH++YS+L+G + ++DK AD +AITD +F EF+ CA Sbjct: 20 YVHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFAD-YCAKVNKGR 78 Query: 66 ------GIQPIIGCQLDI---DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +PI GC++ + M D K + + +++L GY+ LI+LV Sbjct: 79 KEKGEEPFKPIFGCEMYVARRTMHDKDKSMHDN-----SGYHLIVLAKNYTGYKNLIKLV 133 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S ++ D R L++ EGLI+ T +G + + + A + + + Sbjct: 134 SNAWV-DGYYYRPRTDREQLEKY-HEGLIVCTACIAGEVPNKIIHDDIEGARESCEWYHR 191 Query: 177 LFGDRLYVNLQRHRGYD----RYRESQVVQ---------LAYTHELPLVATNNSLFLSEE 223 +FGD Y+ LQRH D RE+ +Q A + + +V TN+ F +E Sbjct: 192 VFGDDFYLELQRHEVKDPSLVANREAYPLQQKANKVLMKFAQEYGIKIVCTNDCHFEDKE 251 Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283 EAHD L+ ++ + + R R + + K R+EM IFSD+PEA+ NT+EI + Sbjct: 252 TAEAHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRAEMNEIFSDIPEAMTNTLEILNKVET 311 Query: 284 ILQVHAPILPRF-------IEKECD------DIQKE-------------EENELRNKAVA 317 H PI+P F E+E D+ KE EE + + Sbjct: 312 YNINHGPIMPFFPIPEDFGTEEEWKQKFSEGDLYKEFTTDENGESPLSPEEGQKVIDRLG 371 Query: 318 GLE------------VRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 G E +LA K Y + + + + FEL+V+ M F GYFLIV D Sbjct: 372 GYEKMYRIKFEADYLAKLAYDGAKKLYGDPLSDEVKNHIRFELHVMKTMGFPGYFLIVQD 431 Query: 363 FIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 FI A+++ ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D D Sbjct: 432 FINAARQDLDVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPDRVNLPDIDTD 491 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F D R V+++V +KYGHE A IIT+ ++ K +++DV R ++P + LCK IP Sbjct: 492 FDDDGRGRVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPLDVSNALCKAIPE 551 Query: 482 DPAHPVSLQ---AIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDR 537 + + AI + A +++ +R ++ ++ LEG R HA G +I Sbjct: 552 RLPDGMKMNLTNAIKCTPELQNAEVSEDIRERNTIKYAKMLEGTVRGTGIHACGFIICRN 611 Query: 538 PLSQLVPMYRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 P+ + VP+ D +PVTQ++ IE GLIK DFLGLKTL+ L+++ + Q Sbjct: 612 PIDEWVPISTATDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVVKQT 671 Query: 593 -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G +DL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ +LYR Sbjct: 672 TGDVIDLEKIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYR 731 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D I + RK+ + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D Sbjct: 732 PGPMDYIPDFIRRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESD 791 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 LR+AMGKK+K +DK K +FI +NG I I+ KFA Y FNKSHA Y+ Sbjct: 792 ALRKAMGKKMKAIVDKMKPKFIKQGQENGHDPQILEKIWSDWEKFASYAFNKSHATCYSW 851 Query: 772 ISYQTAWMKTHYPVEFL 788 ++YQTA+MK HYP E++ Sbjct: 852 VAYQTAYMKAHYPAEYI 868 >gi|221635931|ref|YP_002523807.1| error-prone DNA polymerase [Thermomicrobium roseum DSM 5159] gi|221157507|gb|ACM06625.1| error-prone DNA polymerase [Thermomicrobium roseum DSM 5159] Length = 1059 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 325/1028 (31%), Positives = 514/1028 (50%), Gaps = 76/1028 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS +SLL+ ++ + AA +A+TD + L + F + A GI PI Sbjct: 5 YAELHAHSCFSLLDAPCHPEQLVQQAAALGYEHLALTDHDALHGVVRFVRAAERVGIHPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIV----LLVSTAEGYQRLIELVSRMYLLDQGK 126 +G ++ ++ +L + + + + T+ ++ L T EG ++ + Sbjct: 65 VGAEITMEDGSHLALLAEDERGYATLARLLSAARLGWPTPEGPGSEDTALAG----SPAR 120 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 ++V + WL + +GLI+LTG GP+ RA + A R ++FG +R +V Sbjct: 121 RAVALPWHWLVD-HHDGLIVLTGCRQGPLARALTEGNRADALARAHWLARVFGPERCFVE 179 Query: 186 LQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H RG DR R +++ LA T LPLVAT N +L + DVL+ + + Sbjct: 180 LQDHGERG-DRERCTELAALARTAGLPLVATGNVHYLDAAGWRLQDVLVCIREGITIETP 238 Query: 244 DRPRVTPDHY-LKNRSEMVSIFSDLPEALENTVEIARRCSFIL---QVHAPILPRFIEKE 299 R T Y L + M F P+A+ NT IA RC L QV P LP + Sbjct: 239 HPARKTSAAYRLVAPASMAHRFRSFPDAVANTRRIAERCQVSLDFRQVRFPPLPHLVPPG 298 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 +Q LR +A G + R Q ++ ++L+ EL VI R+ + +FLI Sbjct: 299 ETPMQV-----LRRQAYEGAQRRYGQ-------LSEPVVRQLEHELGVIERLGVAEFFLI 346 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 AD + G GRGS A S+ AY L IT +DPL LLFERFLN +R SMPD D Sbjct: 347 CADLANRFR------GRGRGSAADSLVAYCLGITQVDPLAHRLLFERFLNEERPSMPDID 400 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDF + R+ I YV YG E A + + + QA++A+RD+GR L +P +D L K Sbjct: 401 IDFGLEDRERAIAYVYATYGVEHAAMVCNYVTFQARSAIRDLGRVLGLPPEIIDELAKSQ 460 Query: 480 PN-DPAHPVSLQAIADDSRFREARLADPSVDR----LLEISQKLEGLYRHASTHAAGIVI 534 A PV +A+A RL+ P + R L+ + +LE + RH S H G+VI Sbjct: 461 GRLGEALPVLARALAP-------RLS-PDLRRRLAWLVRLVPQLEDIPRHLSVHVGGMVI 512 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593 RP+ + + V ++ + IE+AGLIK D L ++ ++++ ++++ + Q G Sbjct: 513 AGRPVVEFTTVEPSRMPGRVVLGWDKRDIEEAGLIKTDVLCVRAISVVHQAIELIEQASG 572 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +++DL +P DD Y LL T T+G +Q+ES +Q+L P+ ED+IA V++ RPG Sbjct: 573 LRIDLEQLPLDDPAVYRLLQTADTIGTYQVESRAQQQSLPRTHPERFEDLIAQVAIIRPG 632 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PI +V Y R+ G E + +HP ++P+L+ET GVI+YQEQV+++A ++G + +AD Sbjct: 633 PIQGGMVHPYIRRRRGLEPVRYLHPKLEPILRETLGVILYQEQVLEVAMAIAGMTAGQAD 692 Query: 712 VLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 RRAMG K+ + M+ + F++GA +NG+++ +A IFE +A FA+YGF KSHAAA A Sbjct: 693 AFRRAMGSKRSRAAMEALRGDFLAGAERNGVARPVAERIFEQIAAFAEYGFCKSHAAALA 752 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +Y+T W++ HYP L A + + + DA + I ++PP V + Sbjct: 753 RTAYETLWLRAHYPAALLCALLNNQPMGFYAPEVLIWDALRRGIHVLPPDVLASAARSTL 812 Query: 831 GDNRIY----YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 + ++ L A++GVG A I+ A +++PF D R +L +E+LV Sbjct: 813 TGDPVHGPVRLGLTAVRGVGRAAAERIVAARSEEPFRDTADVVRRA---QLTPEQVEALV 869 Query: 887 FAGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 GA D SR +LL L V R + + E ++ + Sbjct: 870 LVGAFDRLAPDRSRRELLWDLLA-------VATERPERPRLLDVSEPAVRLPELD----T 918 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VE + + + +LGF H +++Y+ R + + G R+A +VV + Sbjct: 919 VEQTFLDYA----ILGFCLDRHLMELYRAQRRILRVTPAARLRTLPPGATARVAGLVVCR 974 Query: 1005 QQKKTRKG 1012 Q T +G Sbjct: 975 QAPPTARG 982 >gi|213027544|ref|ZP_03341991.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 533 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 239/515 (46%), Positives = 343/515 (66%), Gaps = 22/515 (4%) Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ FL +D++AH++ +A+ + RPR +P Y+++ E Sbjct: 19 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 78 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALENTVEIA+RC+ +++ LP+F + E+ L K+ GL Sbjct: 79 MCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDM-----TTEDYLVKKSKEGL 133 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 134 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 193 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 194 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 253 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP ++ +A + Sbjct: 254 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLA-KAFEAEP 312 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 313 QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 372 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K +D++ IP DD +++ + Sbjct: 373 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 432 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V N +RK+G+E Sbjct: 433 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 492 Query: 670 KIVSI-----HPLIDPMLKETQGVIIYQEQVMQIA 699 ++ H + P+L+ T G+I+YQEQVMQIA Sbjct: 493 ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIA 527 >gi|304385057|ref|ZP_07367403.1| DNA-directed DNA polymerase III alpha subunit [Pediococcus acidilactici DSM 20284] gi|304329251|gb|EFL96471.1| DNA-directed DNA polymerase III alpha subunit [Pediococcus acidilactici DSM 20284] Length = 1127 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 320/1039 (30%), Positives = 548/1039 (52%), Gaps = 59/1039 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K +FV L V SSYSLL + ++ A+A+TD N ++ A+EF Q Sbjct: 15 KMMAFVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKND 74 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PI+G L I + + NQ ++VLL GY L+ + S K Sbjct: 75 LKPIVG--LTIWLDSTRGIDNQF--------ALVLLAKNINGYHNLLRISSAKMTEISAK 124 Query: 127 QSVR---ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRL 182 ++ + W + L+++ ++ + A+ + +++ + L Sbjct: 125 PTLTFNDLRAYW------KDLVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDL 178 Query: 183 YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ + + + R +Q+ Q A LPL + +L+EED+ A VL + V+ Sbjct: 179 FLGINGQQSHVMRQTLTQMAQKAGIGCLPLPSVE---YLNEEDHFATQVLRDIDSGKVLQ 235 Query: 242 QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI---LQVHAPILPRFIE 297 + + +++LK +E V + L +A E ++ R + I + + +P LP+F Sbjct: 236 HPELLAKGGGNNWLKPATEFVREYGQLGDA-EMLTQLDRVVAGINLEIPIVSPRLPQFAT 294 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 D +L +A+ ++ + A+ Y+ RLD EL VI M F+ YF Sbjct: 295 PNQQD-SFTYLTQLCQQALTQVKENVPD--------AERYQARLDHELAVIKEMGFADYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LI+ D +Q+A + I GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP+R MPD Sbjct: 346 LIIHDVVQFAHQKQILTGPGRGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-QMPYSQVDRLC 476 D+D D+R+ V++YV ++YGH+ V QIITFG+L AK A+RDV R +MP ++++++ Sbjct: 406 IDLDIPDDQREVVLQYVHDRYGHQHVGQIITFGTLAAKQAIRDVARVFGEMP-NKINQIS 464 Query: 477 KLIPNDPAHPVSLQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 LIPN ++L+ A S R R+ + P + E + +LEGL RH STHAAGIV+ Sbjct: 465 ALIPNKLN--ITLKQAAQTSHRLRDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLS 522 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 L + VP+ +D + ++Q++ ++E+ GL+K DFLGL+ L+L+ L+ + + + Sbjct: 523 QDELVESVPV-QDGNEGMLMSQYSKNFVEQVGLLKMDFLGLRNLSLMNNILELVHRTEPQ 581 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 ++ I +D +T L T G+FQ ES+G+R L + P ++A+ +LYRPGP+ Sbjct: 582 FEIEKIELNDPQTLQLFQRGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPM 641 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +NI + RK+ E + +++ +L ET G+++YQEQVM++A + G SL +AD+LRR Sbjct: 642 ENIDRFVKRKDHLEPYRFPNQILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRR 701 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AM KK +++ + FI GA + G S+ IA ++ + FA+YGFNKSHA AY+ +++Q Sbjct: 702 AMSKKKHAVIEQMRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQ 761 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 A++K HYP +F A + + N K K + Q+ ++ I + P +N + + +I Sbjct: 762 LAYLKAHYPGDFYTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYTYQNGQI 821 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 AIKG+ +H++ E F +++D+ R+ ++ ++ V++ L+FAGALD F Sbjct: 822 RMGFTAIKGLRRDFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSF 881 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 GY+R +L + L + K + +N ++F T + L + + Sbjct: 882 GYNRAELDEYLPELLKGITFSGQNV-----DLFQKLMPTIKSRPDLP------LDEKLDR 930 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ +LG Y S HP++ + ++++ ++ A G + + S + +T+KG Sbjct: 931 EEELLGTYVSAHPVERFAELIKQRRFVPIQQFKA---GEKVTSIVYIRSFRSIRTKKGEP 987 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + + S+ E EA FP Sbjct: 988 MAFAKISDQTDECEAVIFP 1006 >gi|302546169|ref|ZP_07298511.1| LOW QUALITY PROTEIN: DNA polymerase III, alpha subunit [Streptomyces hygroscopicus ATCC 53653] gi|302463787|gb|EFL26880.1| LOW QUALITY PROTEIN: DNA polymerase III, alpha subunit [Streptomyces himastatinicus ATCC 53653] Length = 880 Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust. Identities = 262/708 (37%), Positives = 405/708 (57%), Gaps = 35/708 (4%) Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+VADFI WAK N I VGPGRGS AGS+ +YAL ITD+DP+ L+FERFLNP+R+SMP Sbjct: 56 FLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYALGITDLDPVEHGLIFERFLNPERVSMP 115 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D DIDF + RR EVIRYV KYG ++VAQI T+G+++AK A++D R L PY+ DR+ Sbjct: 116 DVDIDFDERRRGEVIRYVTEKYGADKVAQIGTYGTIKAKNAIKDSARVLGYPYAMGDRIT 175 Query: 477 KLIPNDP-AHPVSLQAIADDS--RFREARLA------DPSVDRLLEISQKLEGLYRHAST 527 K +P D + L I D+ R+ EA +P V ++++ ++ +EGL R Sbjct: 176 KAMPADVLGKGIPLSGITDEKHPRYSEAGEVRGMYENEPDVKKVIDTARGIEGLVRQMGV 235 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAG+++ ++ VP++ VTQ++ E GL+K DFLGL+ LT++ ++ Sbjct: 236 HAAGVIMSSETVTDHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNLTIMDDAVK 295 Query: 588 FL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + A +GV + + + DD +T+ LL TLG+FQ + MR L M+PD EDI A+ Sbjct: 296 MVRANKGVDLKMLDLSLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRMMKPDHFEDISAV 355 Query: 647 VSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQ 700 +LYRPGP +++ + Y RKNG+++I IHP ++ LKE T G+I+YQEQV + AQ Sbjct: 356 SALYRPGPMGMNSHINYALRKNGQQEITPIHPELEEPLKEVLGITYGLIVYQEQVQKAAQ 415 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 +L+GYSL +AD+LRRAMGKK +E +DK+ F G + G S ++++L FA Y Sbjct: 416 VLAGYSLGQADLLRRAMGKKKQEVLDKEFVPFQKGCRERGYSDEAIQAVWDVLVPFAGYA 475 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ I+++ P+ Sbjct: 476 FNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRMGIKVLTPN 535 Query: 821 VNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878 VN +F GD+ I + L A++ VG I+ K + S D+ +V++ N Sbjct: 536 VNESEANFTAQGDDVILFGLTAVRNVGQNVVEAIIRGRKSKGKYSSFPDYLDKVEAVVCN 595 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +R ESL+ AGA D G++R L + + V++ ++F G D Sbjct: 596 KRTTESLIKAGAFDEMGHTRKGLTAHYETMIDNVVAVKRKEAEGQFDLFGGMGGEGGDGE 655 Query: 939 TLE-KFSVENSSVRFEN------EQRVLGFYFSGHPLDVYKPILRKMG------IKGYEE 985 +E S + ++ E+ +LG Y S HPL + +L + G E Sbjct: 656 APGFGLDIEFSDIEWDKAYLLAQEREMLGLYVSDHPLFGIEHVLNDKADAAISQLTGGEH 715 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + I + + ++ Q+K T++G+ T + A E FFP Sbjct: 716 ADGAI----VTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 759 >gi|68535846|ref|YP_250551.1| DNA polymerase III subunit alpha [Corynebacterium jeikeium K411] gi|260578063|ref|ZP_05845985.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium ATCC 43734] gi|68263445|emb|CAI36933.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium K411] gi|258603803|gb|EEW17058.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium ATCC 43734] Length = 1189 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 325/1024 (31%), Positives = 526/1024 (51%), Gaps = 80/1024 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+G ++ + ++ PA+ +TD N++ A F + AAG++P Sbjct: 5 SFVHLHNHTEYSMLDGMAKVDLLAKEVVRQGMPAVGMTDHGNMYGADAFYRAMTAAGVKP 64 Query: 70 IIGCQLDIDMQD--NLKMTNQGKTPFPTVPSI---------VLLVSTAEGYQRLIELVSR 118 IIG + I + N + GK P + ++ A G + L L S Sbjct: 65 IIGIEAYIAPESRFNQQRVRWGK-PEQKSDDVSASGAYLHQTMIAENATGLRNLFYLSSM 123 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 Q + R+ + + +EG+I TG SG + A + ++ ++ Sbjct: 124 ASYEGQLGKWPRMDAELIAQ-HSEGIIATTGCPSGDVQTRLRLGQFDKALEAAGMWQDIY 182 Query: 179 G-DRLYVNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 G D ++ L H G + R R+ ++++ ELP + TN+ ++ E+ AH+V++ V Sbjct: 183 GKDNFFLELMDH-GLEIEKRVRDD-LLEIGRKLELPPLVTNDCHYVLEQQAPAHEVMLCV 240 Query: 235 AHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSF 283 + + D P + +Y+++ ++ + + ++P+ +NT+ +A R Sbjct: 241 QTGSTL---DEPTLDQGGKRFAFSGTGYYVRSAEDIRAQWDKEVPKGCDNTLWVAERVQD 297 Query: 284 ILQVHAPILPRFIEKECDDIQKEEENE-------LRNKAVAGLEVRLAQGAIAKGYHAQD 336 +V + E D + + E L ++ + GLE R + + Sbjct: 298 YSEV-------WEEHPHDRMPIADVPEGHTPTTWLTHEVMKGLEERFPGKEVPA-----E 345 Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 Y R +E++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+ID Sbjct: 346 YIDRAKYEISVIDMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNID 405 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 P+ LLFERFLNP+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K Sbjct: 406 PMEHGLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQ 465 Query: 457 ALRDVGRAL--QMPYSQVDRLCK-LIPNDPAHPVSLQAIADDSRFREARLA--------D 505 A++D RA Q + DR+ K L P A + L I D R A D Sbjct: 466 AIKDSARAHYGQAGFQMADRITKALPPAIMAKDIPLHGITDPEHERYPEAAEVRQLIETD 525 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 P V ++ + + LEG+ R A HA +++ PL +PM++ + +T + E Sbjct: 526 PDVAKIYKDALGLEGVIRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEA 585 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ LT++ +L+ + A R +DL + D TY LL TLG+FQL+ Sbjct: 586 IGLLKMDFLGLRNLTVIGDALENIKANRDFDLDLENLDTVDDPTYELLARGETLGVFQLD 645 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNNRKNGKEKIVSIHPLID--- 679 S+GM++ L+ M+P DI+A ++LYRPGP +D Y +RKNG++ IV IHP ++ Sbjct: 646 SAGMQKLLKRMKPTGFNDIVAALALYRPGPMGVDAHWEYADRKNGRKPIVPIHPELEEAL 705 Query: 680 -PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 +L+ET G+I+YQEQ+M+I+Q ++ Y+ +AD R+AMGKK E ++K+ F SG Sbjct: 706 HEILEETYGLIVYQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLEKEFVTFESGMKS 765 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NG S +++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D Sbjct: 766 NGYSADAIKTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYAPEYMAALLTSVADK 825 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K + D R I+++ P VN F+ I + L A++ VG I+ + Sbjct: 826 KDKSAIYLADCRHLGIRVLSPDVNDSRYTFQSVGKDIRFGLGAVRNVGEDVVNSIIASRE 885 Query: 859 DK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 +K F D+ ++D N+RV ESL+ AGA D G+ R ++ ++ +K Sbjct: 886 EKGAFTDFSDYLDKIDLVAANKRVTESLIKAGAFDSLGHPRKGMVLVHEDAVDAVTATKK 945 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN------EQRVLGFYFSGHPLDVY 971 ++FA G F VE +E E+ +LG Y SGHPLD + Sbjct: 946 AAAKGQFDLFAGLGGDDDAGDV---FRVEVPDQEWERKHQLALERDMLGLYVSGHPLDGF 1002 Query: 972 KPIL 975 + L Sbjct: 1003 EDAL 1006 >gi|255521289|ref|ZP_05388526.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes FSL J1-175] Length = 694 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 275/724 (37%), Positives = 425/724 (58%), Gaps = 38/724 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +Q L N + ++L+ + GY L+++ S + ++G + Sbjct: 63 IG--MTVTIQGYLNPINSYE--------LILIAESTAGYHELLKIASAIQTREEGPE--- 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 ---NPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ Y ++ EM + E A T E+A RC + + +LPRF E + Sbjct: 226 PN-YFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNEGQNAS--- 281 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A AGL+ R GA +Y++RL++EL VI M F+ YFLIV D I+++ Sbjct: 282 -DVLRQTAFAGLKERNLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYS 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RR Sbjct: 333 REAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 393 DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLG--I 450 Query: 488 SLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +LQ A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 451 TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D Sbjct: 511 LG-SGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLED 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK Sbjct: 570 KKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + + Sbjct: 630 HGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVL 689 Query: 726 DKQK 729 ++++ Sbjct: 690 NEER 693 >gi|167471052|ref|ZP_02335756.1| DNA polymerase III, alpha subunit [Yersinia pestis FV-1] Length = 743 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 252/605 (41%), Positives = 362/605 (59%), Gaps = 25/605 (4%) Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507 TFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A A + + E AD Sbjct: 15 TFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGMTLE-KAFAAEPQLAEIYEADEE 73 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 V L+++++KLEG+ R+A HA G+VI ++ P+Y D + PVTQF+ +E AG Sbjct: 74 VRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQFDKNDVEYAG 133 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLIPFDDHETYHLLTTKGTLGIFQ 622 L+KFDFLGL+TLT++ +L+ + R K +D++ IP +D +++ +L T +FQ Sbjct: 134 LVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFDMLQRSETTAVFQ 193 Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI-----H 675 LES GM+ ++ ++PDC ED+IALV+L+RPGP+ + +V N +RK+G+E I H Sbjct: 194 LESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDIEWQH 253 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 + P+L+ T G+I+YQEQVMQIAQ+LSGYSL AD+LRRAMGKK EM KQ+ F G Sbjct: 254 ESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPAEMAKQRSVFEDG 313 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A GI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT + Sbjct: 314 AKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTAD 373 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIM 854 MDN +K+ + + ++I+PP +N+ F V D+ I Y + AIKGVG I+ Sbjct: 374 MDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIL 433 Query: 855 EASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 EA + F L D C+RVD+KKLN+R+LE L+ +GA D G R L+ SL + K A Sbjct: 434 EARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLGPHRAALMSSLGDALKAAD 493 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN-----SSVRFENEQRVLGFYFSGHPL 968 K ++F G +D + S N V + E+ LG Y +GHP+ Sbjct: 494 QHAKAEAIGQVDMF----GVLADAPEQVEQSYANVPPWQEQVVLDGERETLGLYLTGHPI 549 Query: 969 DVY-KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 Y K I R G ++ T RG +V++ + T++G+RIG T + + Sbjct: 550 TQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGNRIGICTLDDRSGRL 609 Query: 1028 EANFF 1032 E F Sbjct: 610 EVMLF 614 >gi|269115187|ref|YP_003302950.1| DNA polymerase III subunit alpha [Mycoplasma hominis] gi|268322812|emb|CAX37547.1| DNA polymerase III, alpha chain [Mycoplasma hominis ATCC 23114] Length = 996 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 290/913 (31%), Positives = 483/913 (52%), Gaps = 92/913 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 ++L +++ +S LE +++N+ + ++ + IT+ N +S F +A ++PI Sbjct: 3 LINLHLNTIFSFLESTITINDFIQELLNNNIEYFGITEHCNFYSMPHFLNEARKHDLKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +++ +++NL ++ E + L +M L+ GK+ Sbjct: 63 FGLDVNVKIENNLY-------------RFIVYCQNKESFMNL-----KMLSLNYGKKGY- 103 Query: 131 ICLSWLQEIGTEGLIMLTGGSSG---------PIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 I L+ +++ LI + G I+ +F S E + +F Sbjct: 104 IDLAEIRDYS--NLIWIEHPIFGYYKKTNNILEIENHYFAISQYDIENS--EIQNIFDKC 159 Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 L +N H +Y ++ +++ +NN +F E YE V Sbjct: 160 LLIN---HNSILKYDDNSIIKTMSN------ISNNKIF--ESIYEEFKV----------- 197 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 D KN S++ E +E T + A++ F ++ +P+F Sbjct: 198 ---------DIETKNNSKL-------EELIERTNDFAKKLYFEIETKGFKMPKF------ 235 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 K ++N N+ + L + + K +Y+QR EL VI + F+ YFL+V Sbjct: 236 ---KNDKNIASNEYLKLLLFKSIREKFDKYSWTDEYQQRFLKELKVIEDLNFADYFLVVQ 292 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D++ WAK NNI +GPGRGS AGS+ Y L IT++DP+++ L+FERFLN +R++MPD DID Sbjct: 293 DWVNWAKNNNIKIGPGRGSAAGSLIGYLLNITEVDPIKYDLIFERFLNSNRVTMPDIDID 352 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 ++R++VI Y+ KYGHE VA I+TF SL K+A+RD+ R + + ++ + K I N Sbjct: 353 VQDNKRNDVIEYLLKKYGHEFVANIVTFSSLGKKSAIRDILRINNIAPTLINEISKNIEN 412 Query: 482 DPAHPVSLQAIADDSRFREARLA--DPSVD----RLLEISQKLEGLYRHASTHAAGIVIG 535 D L +++R + LA +P+ + R+L + ++ G YR THAAG+VI Sbjct: 413 DEQ---DLLVEYNENRNLQLSLAKLNPNDESFSIRILNQAARISGFYRQIGTHAAGLVIS 469 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594 D+P+ + P+ + + L TQ +M+++E GL+K D LGLKTLT + +D + Q + + Sbjct: 470 DQPVISIAPVQYNSENFLQ-TQISMEYLEDFGLVKMDILGLKTLTTISNIVDLIYQNQNL 528 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 K++L I D +T LL++ T G+FQ+ES M +AL ++ + EDI+A++SL RPGP Sbjct: 529 KINLKDIDLTDQKTLELLSSGHTRGVFQVESPIMIKALRQVKVNNFEDIVAIISLNRPGP 588 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 I N+ VY RK G E I I+ D +L T G+I+YQEQ+M+IAQ+++ + EAD LR Sbjct: 589 IKNVSVYAKRKFGLEPIPKINNEYDKILDSTYGIIVYQEQIMKIAQVVAKMTFIEADNLR 648 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 R + KK EM+ K FI A KNG K++A NIF + KFA YGFN+SHA +Y++I++ Sbjct: 649 RIISKKKVNEMEDIKSIFIERAMKNGYEKSLATNIFNSIEKFASYGFNRSHAVSYSIITF 708 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 Q A++K HYP+EF + ++ + + I KF +A + ++I+ P +N + + + + Sbjct: 709 QMAFLKAHYPLEFYTSCISSAHGSQDTIAKFVNEASECGVEIVSPDINLSESEAIIKNRK 768 Query: 835 IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALD 892 I L IKG+G A I+E S P+ + DF ++ S+ + + +E L+ A L Sbjct: 769 IILPLTLIKGLGPEIANSIVENRSKYGPYKNFLDFLLKISSSQSIGKSTIELLIKANTLR 828 Query: 893 CFGYSRMQLLQSL 905 F Y++ LL + Sbjct: 829 SFNYNQNTLLNEI 841 >gi|110801675|ref|YP_697669.1| DNA polymerase III, alpha subunit, interruption-C [Clostridium perfringens SM101] gi|110682176|gb|ABG85546.1| DNA polymerase III, alpha subunit, interruption-C [Clostridium perfringens SM101] Length = 783 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 242/601 (40%), Positives = 362/601 (60%), Gaps = 40/601 (6%) Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD D DFC + R VI YV KYGH+ V+QIITFG++ A+A +RDVGRA+ Sbjct: 2 FLNPERVSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMN 61 Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 Y++VDR+ K IP + +A+ + + + V L+++S++LEGL RH+S Sbjct: 62 YTYAEVDRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSS 120 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 THAAG+VI +PL + VP+ ++ S VTQF+M +E+ GL+K DFLGL+TLT+++ ++ Sbjct: 121 THAAGVVIASQPLVEYVPLQKNDES--IVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAV 178 Query: 587 DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 D + RGV +DL + FDD E Y ++ T+G+FQLES+GM ++ ++PDC+EDIIA Sbjct: 179 DMIKYNRGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIA 238 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +SLYRPGP+ I Y + K + + I P ++ +L T GV++YQEQVM+I + L+GY Sbjct: 239 GISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGY 298 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELL 753 S+ +D++RRAM KK + M+++++ FI G +NGIS A IF+ + Sbjct: 299 SMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSM 358 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSHAAAYAVI +QTA++ +YPVEFLAA + M N +K+ ++ + A + Sbjct: 359 MDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLG 418 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV 872 IQ++PP +N F V + I + + AIK VG +I ++ +K F SL DFC+++ Sbjct: 419 IQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGKFTSLMDFCNKI 478 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D +N+R +ESL+ AG D R QLL + I K + ++F Sbjct: 479 DLSIVNKRSVESLIKAGTFDSLNVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG---- 534 Query: 933 TFSDKITLEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVY-KPILRKMG 979 L++ S N +R+ N E+ + G Y SGHPLD Y KP+ + Sbjct: 535 ------ALQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTS 588 Query: 980 I 980 I Sbjct: 589 I 589 >gi|241896302|ref|ZP_04783598.1| DNA-directed DNA polymerase III, alpha chain [Weissella paramesenteroides ATCC 33313] gi|241870463|gb|EER74214.1| DNA-directed DNA polymerase III, alpha chain [Weissella paramesenteroides ATCC 33313] Length = 1122 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 317/974 (32%), Positives = 494/974 (50%), Gaps = 60/974 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 V LQ +++SLL ++ ++ + A+A+TD N L+ +F Q A AA IQPI Sbjct: 1 MVPLQTMTAFSLLRSPMTPQQLIKAVQDKGYQAVALTDYNVLYGMYDFYQAAQAADIQPI 60 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ + Q +P ++ LV GY L+++ S + Q+ + Sbjct: 61 LGLTAEL-------IGLQSSQSYP----VIFLVENQVGYHNLLQISSAI-----NTQNEK 104 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L L+ + I+L S G + A + L+ D +V L Sbjct: 105 MTLDDLKSYLSGLYIILP--SIGEL--AVLLGTEPERAMTLVKTVTALADATHVFLGVSL 160 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVT 249 + +LA ++A N L+ + D + V+ + ++S + Sbjct: 161 DMREAMLQSIKELAQNTGTRIIANENVLYPNASDQFSAQVIQKLGQGEIISNVGLAQKQA 220 Query: 250 PDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 YLK ++ + ++ L +A+ENT IA +L+ + +P++ + + Sbjct: 221 ATAYLKESTDWANEYNSRGLSDAVENTDWIAAHSYVVLEQSSVTVPKYETPQG----QSS 276 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L A GL RL A+ A Y+ RL EL +I + F+ YFLIV D + +A Sbjct: 277 SDYLAELATTGLTNRLHDMAV----DATPYKARLKEELRIINELGFADYFLIVWDVLNYA 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +I GPGRGS AGS+ AY L ITD+DP+ + LLFERFLNP+R MPD DID +RR Sbjct: 333 HKKSIRTGPGRGSAAGSLVAYVLWITDVDPIAYDLLFERFLNPERHQMPDIDIDIPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +E++ Y+ YGHERVAQIITF ++ +A +RDV R + +Q+D L K +P A Sbjct: 393 EEILDYLHEHYGHERVAQIITFSTMAQRAVIRDVARVFGLNPTQIDNLSKSMPRGTA--- 449 Query: 488 SLQAIADDS-RFREARLADPSVDRLL-EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 SLQA + S FR A L P +LL + + KLEGL R+AS HAAG+V+ PL+ +P+ Sbjct: 450 SLQASYESSLPFRNALLDLPVDGQLLYQTALKLEGLPRNASLHAAGVVLSAEPLANYMPV 509 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPF 603 L VTQ +E GL+K DFL L L +L ++ + + S+ + Sbjct: 510 QLGDDGRL-VTQLPKGPVEALGLLKMDFLALSNLNILDIAIREIQKIPDHESFSIASVSL 568 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD T L T G+FQ ES GM+ L ++PD EDI+A +L+RPGP+ NI + Sbjct: 569 DDQATLRLFQNGLTNGVFQFESGGMKNILRQLRPDSFEDIVAANALFRPGPMQNIPHFVA 628 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+ +EK + +L T G+I+YQEQVM++A+ +G+SL EAD+LRRAM KK + Sbjct: 629 RKHQEEKQDVPDASMAEILAPTYGIIVYQEQVMRVAERFAGFSLGEADLLRRAMSKKDHD 688 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 ++ + +FI GA + +A +F + FA YGFN+SHA AY+ +++Q A++K HY Sbjct: 689 KIAAMQSKFIDGAVGRHHDQQVAEQVFSYIETFAQYGFNRSHAVAYSKLAFQLAYIKAHY 748 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAI 842 P F A + + + +K+ + +A+ ++ I+ PS+N + + + LA+I Sbjct: 749 PAAFYKAVLNDSIADHKKVGIYIAEAKLSHVTILRPSLNHSWQGYSMNKQGELQMGLASI 808 Query: 843 KGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 G+ I E + L +F R+ SK LE L++AGALD FG++R L Sbjct: 809 SGLRRDFREALIQERQEGGQYRDLTNFIGRLPSKYRKVSQLEPLIYAGALDEFGFNRKTL 868 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE----NSSVRFENEQR 957 L S+ Q Y V A E + + +T + V N + +E+E Sbjct: 869 LGSM---QGYIDAVG----------LAGESISLFESLTPKMHEVAEFPLNEKLGYEHE-- 913 Query: 958 VLGFYFSGHPLDVY 971 LG Y SGHP++ Y Sbjct: 914 YLGVYLSGHPIEPY 927 >gi|170763890|ref|ZP_02634742.2| DNA polymerase III subunit alpha [Clostridium perfringens B str. ATCC 3626] gi|182420478|ref|ZP_02642185.2| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC 8239] gi|170712862|gb|EDT25044.1| DNA polymerase III subunit alpha [Clostridium perfringens B str. ATCC 3626] gi|182381484|gb|EDT78963.1| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC 8239] Length = 783 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 242/601 (40%), Positives = 363/601 (60%), Gaps = 40/601 (6%) Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD D DFC + R VI YV KYGH+ V+QIITFG++ A+A +RDVGRA+ Sbjct: 2 FLNPERVSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMN 61 Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 Y++VDR+ K IP + +A+ + + + V L+++S++LEGL RH+S Sbjct: 62 YTYAEVDRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSS 120 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 THAAG+VI +PL + VP+ ++ S VTQF+M +E+ GL+K DFLGL+TLT+++ ++ Sbjct: 121 THAAGVVIASQPLVEYVPLQKNDES--IVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAV 178 Query: 587 DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 D + RGV++DL + FDD E Y ++ T+G+FQLES+GM ++ ++PDC+EDIIA Sbjct: 179 DMIKYNRGVEIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIA 238 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +SLYRPGP+ I Y + K + + I P ++ +L T GV++YQEQVM+I + L+GY Sbjct: 239 GISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGY 298 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELL 753 S+ +D++RRAM KK + M+++++ FI G +NGIS A IF+ + Sbjct: 299 SMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSM 358 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSHAAAYAVI +QTA++ +YPVEFLAA + M N +K+ ++ + A + Sbjct: 359 MDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLG 418 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRV 872 IQ++PP +N F V + I + + AIK VG +I ++ +K F SL DFC+++ Sbjct: 419 IQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKI 478 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D +N+R +ESL+ AG D R QLL + I K + ++F Sbjct: 479 DLSIVNKRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG---- 534 Query: 933 TFSDKITLEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVY-KPILRKMG 979 L++ S N +R+ N E+ + G Y SGHPLD Y KP+ + Sbjct: 535 ------ALQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTS 588 Query: 980 I 980 I Sbjct: 589 I 589 >gi|170764215|ref|ZP_02638356.2| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str. F4969] gi|170715700|gb|EDT27882.1| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str. F4969] Length = 783 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 242/601 (40%), Positives = 362/601 (60%), Gaps = 40/601 (6%) Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD D DFC + R VI YV KYGH+ V+QIITFG++ A+A +RDVGRA+ Sbjct: 2 FLNPERVSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMN 61 Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 Y++VDR+ K IP + +A+ + + + V L+++S++LEGL RH+S Sbjct: 62 YTYAEVDRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSS 120 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 THAAG+VI +PL + VP+ ++ S VTQF+M +E+ GL+K DFLGL+TLT+++ ++ Sbjct: 121 THAAGVVIASQPLVEYVPLQKNDES--IVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAV 178 Query: 587 DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 D + RGV +DL + FDD E Y ++ T+G+FQLES+GM ++ ++PDC+EDIIA Sbjct: 179 DMIKYNRGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIA 238 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +SLYRPGP+ I Y + K + + I P ++ +L T GV++YQEQVM+I + L+GY Sbjct: 239 GISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGY 298 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGAS------------KNGISKTIAVNIFELL 753 S+ +D++RRAM KK + M+++++ FI G +NGIS A IF+ + Sbjct: 299 SMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSM 358 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSHAAAYAVI +QTA++ +YPVEFLAA + M N +K+ ++ + A + Sbjct: 359 MDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLG 418 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRV 872 IQ++PP +N F V + I + + AIK VG +I ++ +K F SL DFC+++ Sbjct: 419 IQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKI 478 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D +N+R +ESL+ AG D R QLL + I K + ++F Sbjct: 479 DLSIVNKRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFG---- 534 Query: 933 TFSDKITLEKFSVENSSVRFEN------------EQRVLGFYFSGHPLDVY-KPILRKMG 979 L++ S N +R+ N E+ + G Y SGHPLD Y KP+ + Sbjct: 535 ------ALQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTS 588 Query: 980 I 980 I Sbjct: 589 I 589 >gi|302552433|ref|ZP_07304775.1| LOW QUALITY PROTEIN: DNA polymerase III subunit alpha [Streptomyces viridochromogenes DSM 40736] gi|302470051|gb|EFL33144.1| LOW QUALITY PROTEIN: DNA polymerase III subunit alpha [Streptomyces viridochromogenes DSM 40736] Length = 914 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 257/736 (34%), Positives = 403/736 (54%), Gaps = 41/736 (5%) Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +R + E+ VI M FS YFL+VAD ++A+ N IP+GPGRGS GS+ AYA IT++ PL Sbjct: 56 ERFETEMAVIGPMGFSSYFLVVADICRYARDNGIPLGPGRGSATGSLVAYATRITELCPL 115 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD ++RYV +KYG E A + TFG ++AK A+ Sbjct: 116 EHGLLFERFLNPERINPPDVDLDFDDRQRDRMVRYVIDKYGDEYTALVNTFGKIKAKNAI 175 Query: 459 RDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREAR------LADPSVD 509 +D R L PY+ +R+ K +P N + P+ A +R+ EA ++P V Sbjct: 176 KDSARILGYPYAHGERITKALPPDQNGKSAPLDALFDASHARYPEAGEIRQMYGSEPDVA 235 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 R+++ ++ +EGL R HAA +++ L+ +P++ +T F+ E GL+ Sbjct: 236 RVIDTARGVEGLTRGTGVHAAAVILSKTRLTDRIPLHLRASDGARITGFDYPSCEAMGLV 295 Query: 570 KFDFLGLKTLTLLQKSLDFLAQ-RGVKV-----------------DLSLIPFDDHETYHL 611 K DFLGL+ L ++ ++++ + + RGV++ +IP DD TY L Sbjct: 296 KMDFLGLRNLGVIDQAIENVRENRGVRLATVDPGDGAGGDPGGDPGTVVIPLDDARTYRL 355 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKE 669 L TLG+FQL+ GMR L+ M P EDI A +LYRPGP+ + Y R+NGK+ Sbjct: 356 LAEANTLGVFQLDGGGMRALLKLMAPTRFEDIAAANALYRPGPMAANAHTNYALRQNGKQ 415 Query: 670 KIVSIHP----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 IHP ++P+L T +++YQEQ+M +A+ L+GY+L AD+LRRAMGKK E + Sbjct: 416 AATPIHPELREALEPILGPTHHLLVYQEQIMAVARQLAGYTLGGADMLRRAMGKKKPEVL 475 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 + E+F G + NG S +++++ F+ Y FNKSH A Y ++SY TA++K +YP Sbjct: 476 AAEWEKFHGGMTANGYSDEAVRALWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPA 535 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 E++AA +T D+ +K + DAR ++++PP +N +F + + + L +++ V Sbjct: 536 EYMAALLTSVGDDKDKAALYLADARANGVRVLPPDINESVAEFTAVGDDVRFGLRSVRNV 595 Query: 846 GTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G +++A F S DF + LN+R +ESL+ AGA D G+SR L Sbjct: 596 GDGVIEAVIDARRRGGRFTSFSDFLHKAGLPALNKRAVESLIKAGAFDSLGHSRKGLTAV 655 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVENSSVR---FENEQRV 958 + V+K + +++FA G +D L+ E R E+ + Sbjct: 656 HEAAVDAVIPVKKAASFGQDDLFAGLGGAEADAAPAFGLDFAVAEEEWPRRQLLATEREM 715 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGW 1017 LG Y S HPLD + IL E +A+ R +RL+ ++ Q+K T++G+ Sbjct: 716 LGLYVSAHPLDGAERILAAARDCSVAELLASGRTSGEVRLSGLITGVQRKVTKQGNAWAV 775 Query: 1018 VTFSEPAKEYEANFFP 1033 V ++ E FFP Sbjct: 776 VQLTDRDAGIEVLFFP 791 >gi|251782507|ref|YP_002996809.1| DNA polymerase III DnaE [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391136|dbj|BAH81595.1| DNA polymerase III alpha subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127393|gb|ADX24690.1| DNA polymerase III DnaE [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1036 Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust. Identities = 322/1041 (30%), Positives = 519/1041 (49%), Gaps = 132/1041 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + L++ ++ I I D +NL+ A F + G++P+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLSHYFEQAKQLGYQTIGIMDRDNLYGAYHFIRGCQKHGLRPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++++ Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEVEVVYQEQQVLLN-------------LIAKNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + +L + EGL ++ +++ D L V + Sbjct: 102 LQMDYLCQ-HLEGLAVIIPN-------------------------RVWTDTLAVPFDYYI 135 Query: 191 GYDRYRESQVVQLAYTH---ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G D+Y + ++H + + + +++D E +L A+ + +S + P Sbjct: 136 GVDQYTD-------FSHMDSKKQFIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPV 186 Query: 248 VTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 V D L + ++ + + + P+AL+N ++ + LPRF + K Sbjct: 187 VESDQELGDCQQLTAYYQAHCPQALQNLEDLVSGIHYDFDTDLK-LPRF------NRDKS 239 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + EL+ AGL +AKG + Y+ RL EL VI+ M F YFLIV D +++ Sbjct: 240 AKQELQELTQAGL--------VAKGLWQEPYQTRLAHELTVISDMGFDDYFLIVWDLLRF 291 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 + +G GRGS AGS+ AYAL IT IDP+R LLFERFLN +R SMPD DID Sbjct: 292 GRSKGYYMGMGRGSAAGSLVAYALDITGIDPIRHDLLFERFLNKERYSMPDIDIDLPDIY 351 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAH 485 R E +RYV+N+YG + AQI+TF + K A+RDV + +P ++ L K I D Sbjct: 352 RSEFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGFKDSLA 411 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V + I+ FR+ + + I+Q++EG R S HAAGIV+ D L+ +P+ Sbjct: 412 TVYEKNIS----FRQTINSRVEFQKAFTIAQRIEGNPRQTSIHAAGIVMSDDNLTNHIPL 467 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 ++ VTQ++ +E GL+K DFLGL+ LT +QK + +A+ G +D++ I + Sbjct: 468 --KAGDEMMVTQYDANAVEANGLLKMDFLGLRNLTFVQKMQEKVAKEYGQHIDIAAIDLE 525 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T L T GIFQ E +G L+ ++P E+I+A SL RPG D V + R Sbjct: 526 DPKTLALFAKGDTRGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTVNFIKR 585 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 + G+EKI I P+I P+L+ T G+++YQEQVMQIAQ +G++L +AD+LRRAM KK E Sbjct: 586 RQGQEKIDLIDPVIAPILESTYGIMLYQEQVMQIAQAYAGFTLGKADLLRRAMSKKNLLE 645 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M K +E F++GA + G S+ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 646 MQKMEEAFVAGAKQLGRSEETAKLLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYP 705 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIK 843 F M + + DA + N Q+ ++N+ P D K+ N IY L IK Sbjct: 706 AVFYDIMMNYSSSD------YITDALESNFQVAQVTINSIPYTD-KIESNSIYMGLKNIK 758 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G+ A I+E +PF S+EDF +RV K LE L+ G DCF +R ++L+ Sbjct: 759 GLPRDFAYWIIE---QRPFSSVEDFLTRVPEKYQKIAFLEPLIKIGLFDCFDPNRKKILE 815 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQRVLG 960 +L+ + + N+ ++FA G D T EK+S EQ ++G Sbjct: 816 NLEGLLVF--------VNELGSLFADSSFNWGDTEDYSTTEKYSF---------EQELIG 858 Query: 961 FYFSGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 S HPL + PI + + K E+ ++ ++IR S QQ Sbjct: 859 VGMSKHPLIDIAEKSTQAFTPISQLVKDK---EATILVQVDSIRTIRTKTSGQQ------ 909 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + +++ ++ K+ + FP Sbjct: 910 --MAFLSVNDTKKKLDVTLFP 928 >gi|322411903|gb|EFY02811.1| DNA polymerase III DnaE [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1036 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 321/1041 (30%), Positives = 523/1041 (50%), Gaps = 132/1041 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + L++ ++ I I D +NL+ A F + G++P+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLSHYFEQAKQLGYQTIGIMDRDNLYGAYHFIRGCQKHGLRPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++++ Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEVEVVYQEQQVLLN-------------LIAKNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWLQEIGTEGLIML------TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +L + EGL ++ T S P D ++ + Q + F + R ++ Sbjct: 102 LHMDYLCQ-HLEGLAVIIPNRVWTDTLSFPFD--YYISVDQYTD-----FSSMDSKRQFI 153 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L+ R + +++D E +L A+ + +S + Sbjct: 154 PLRTAR----------------------------YFAQDDMETLHMLHAIRDN--LSLVE 183 Query: 245 RPRVTPDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 P V D L + ++ + + + P+AL+N ++ + LPRF + Sbjct: 184 TPVVESDQELGDCQQLTAFYQAHCPQALQNLEDLVSGIHYDFDTDLK-LPRF------NR 236 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 K + EL+ AGL +AKG + Y+ RL EL VI+ M F YFLIV D Sbjct: 237 DKSAKQELQELTQAGL--------VAKGLWHEPYQTRLAHELTVISDMGFDDYFLIVWDL 288 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 +++ + +G GRGS AGS+ AYAL IT IDP+R LLFERFLN +R SMPD DID Sbjct: 289 LRFGRSKGYYMGMGRGSAAGSLVAYALNITGIDPVRHDLLFERFLNKERYSMPDIDIDLP 348 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-ND 482 R E +RYV+N+YG + AQI+TF + K A+RDV + +P ++ L K I D Sbjct: 349 DIYRSEFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGFKD 408 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 V + I+ FR+ + + I+Q++EG R S HAAGIV+ D L+ Sbjct: 409 SLATVYEKNIS----FRQTINSRVEFQKAFAIAQRIEGNPRQTSIHAAGIVMSDDNLTNH 464 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 +P+ ++ VTQ++ +E GL+K DFLGL+ LT +QK + +A+ G ++D++ I Sbjct: 465 IPL--KAGDEMMVTQYDANAVEANGLLKMDFLGLRNLTFVQKMQEKVAKEYGQQIDIAAI 522 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 +D +T L T GIFQ E +G L+ ++P E+I+A SL RPG D V + Sbjct: 523 DLEDSQTLALFAKGDTRGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTVNF 582 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R+ G+EKI I P+I P+L+ T G+++YQEQVMQIAQ +G++L +AD+LRRAM KK Sbjct: 583 IKRRQGQEKIDLIDPVIAPILESTYGIMLYQEQVMQIAQTYAGFTLGKADLLRRAMSKKN 642 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EM K +E F++GA + G S+ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K Sbjct: 643 LLEMQKMEEAFVAGAKQLGRSEETAKLLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKA 702 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLA 840 HYP F M + + DA + N Q+ ++N+ P D K+ N IY L Sbjct: 703 HYPAVFYDIMMNYSSSD------YITDALESNFQVAQVTINSIPYTD-KIEANSIYMGLK 755 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IKG+ A I+E + F S+EDF +RV K LE L+ G DCF +R + Sbjct: 756 NIKGLPRDFAYWIIE---QRSFSSVEDFLTRVPEKYQKIAFLEPLIKIGLFDCFDPNRKK 812 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 +L++L+ + + N+ ++FA + D E +S ++ ++ EQ ++G Sbjct: 813 ILENLEGLIVF--------VNELGSLFADSSFNWVDT---EDYS---TTEKYSFEQELIG 858 Query: 961 FYFSGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 S HPL + PI + + K E+ ++ ++IR +S QQ Sbjct: 859 VGMSKHPLIDIAEKSTQAFTPISQLVKDK---EATILVQVDSIRTIRTKISGQQ------ 909 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + +++ ++ K+ + N FP Sbjct: 910 --MAFLSVNDTKKKLDVNLFP 928 >gi|313884090|ref|ZP_07817856.1| DNA polymerase III, alpha subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312620537|gb|EFR31960.1| DNA polymerase III, alpha subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 1113 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 316/1027 (30%), Positives = 527/1027 (51%), Gaps = 52/1027 (5%) Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75 V S+YS + + + + + + A A+ + D NLF+A EF Q + GI+ ++G + Sbjct: 4 VKSTYSFNQATILVKDYVQQAKAMGYQAVGLADQGNLFAAYEFYQASQVFGIKAVLGLTV 63 Query: 76 DI-DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134 + + D+ K P+++ + +GYQ LI+L SR+ + Q + S ++ L+ Sbjct: 64 SLPGLIDDQK----------AWPALIYAIDQ-KGYQGLIKL-SRL-MSHQKEYSNQLYLN 110 Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYD 193 L + L+ ++ G +D + + A+ L +++FG D++Y+ Q ++ Sbjct: 111 CLSDYKGH-LVYISRGHDSELDSLVLHDQIKEAQDLLKQLREIFGEDKVYLGHQI-LPFN 168 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT--PD 251 + + A + +L V+T L +ED A +L D + Sbjct: 169 QIVTRHLSDFAKSMDLKQVSTQPVRLLQQEDVMALTILKRRVDRAAYEPLDLTNFGQRSE 228 Query: 252 HYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 L +R ++ ++ L E + N+ ++ R F LQ +LP F Q E Sbjct: 229 KVLLSRKDLEDLYQHYGLVEIISNSDQLMTRLEFKLQEGKDLLPVFDSGSLLTSQ-EYLK 287 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 +L +A+ G AK Y++RL +EL+VI +M + YFLIVAD + + ++ Sbjct: 288 QLVTQALNQF------GLAAKN----TYQERLAYELSVIHQMGYDDYFLIVADIVSYCRQ 337 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 ++I +G GRGS GS+ Y L ++ IDPL++ L+FERFLNP+R +MPD D+D RD+ Sbjct: 338 HHIQLGAGRGSAPGSLVTYLLGVSTIDPLKYDLIFERFLNPERQTMPDIDLDIPNSHRDQ 397 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI YV+ KYG+E+VAQI TF AK+A+++V R + SQ+ KLIP DP + L Sbjct: 398 VIAYVRQKYGYEQVAQIATFNRFGAKSAIQEVLRQVGQD-SQLKTWSKLIPTDPNRKIDL 456 Query: 490 -QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 QA ++ FR A P+ + + Q LEGL S HA G+VI D P+ ++P+ + Sbjct: 457 GQAYQENKSFRHLVDASPTNQAIFQAGQALEGLISEHSIHAGGLVITDFPIDSMIPVLEE 516 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 +S +TQF+ +E GL+K D L LK LTLL + L + + ++ I +DHET Sbjct: 517 GQS--LITQFDKDGVENLGLLKIDLLALKNLTLLDQILQEVKVKDQAFEIEDIDLNDHET 574 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 L T G+FQ ES G+R L +QP EDI+A+ +L+RPGP+ I Y RK+G+ Sbjct: 575 LQLFRRAQTRGVFQFESPGIRNVLSQLQPTSFEDIVAVNALFRPGPMGQIQTYIKRKHGQ 634 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 + P ++ +LK+T G+IIYQEQVMQI ++G+++ +AD+LRRAM KK E M Q Sbjct: 635 YQATYPVPELEGILKDTYGIIIYQEQVMQILVSMAGFTMGQADLLRRAMSKKDHEVMQAQ 694 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 K F++GA + G + A +++ +A+FA+YGFN+SHA Y+ +++Q A++K HY F Sbjct: 695 KVNFLTGALEKGYEEKTASQVYDAIAEFANYGFNRSHAVVYSKLAFQLAYLKVHYSQAFF 754 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 + + +++ + ++ + I+I+ VN + N + +KG+ Sbjct: 755 LGQLKFD---PTQMQAYLEEIKAAGIKILTLDVNKSQMGVSANGNDLRLGFQMVKGIRPD 811 Query: 849 TARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 R I++ P+ DF R+ K L LE L+ GA D GY+R LL +L+ Sbjct: 812 LMREIIDNRQLMGPYQDFFDFLRRLPDKYLQVTPLEILIKVGAFDSLGYNRATLLTNLEK 871 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + + ++ N ++F + KI E + N E+ LGFY SGHP Sbjct: 872 VIESVRFSGLNM-----DLFEE----MAPKI--ETVAELNPLQLIHQEKEHLGFYLSGHP 920 Query: 968 LDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 LD Y+ L ++ + + + RL ++ + +TR+G + + + + + Sbjct: 921 LDFYRDNLNAEINLMNISQIKKEEPKSPFRLLGIISRIKLTQTRQGQTMAFAQIEDESGK 980 Query: 1027 YEANFFP 1033 + FP Sbjct: 981 LDQVLFP 987 >gi|37784574|gb|AAP47638.1| DnaE precursor [Aphanothece halophytica] Length = 712 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 242/600 (40%), Positives = 374/600 (62%), Gaps = 40/600 (6%) Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 DR +++V+++ ++ +VATN+S F+S D EAHD L+ + + ++++ R R + Sbjct: 10 DRIVNTEIVKISQELDIKIVATNDSHFISCNDVEAHDALICIQTNKLITEDKRLRYSGTE 69 Query: 253 YLKNRSEMVSIFSD------LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 YLK+ EM +F D + A+ NTVE+A + + P +P + + Sbjct: 70 YLKSADEMRQLFRDHLSDDVIESAIANTVEVAEKVKPYNILGEPRIPDYPVPSGYNA--- 126 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L GL RL G ++ ++ Y+ RL+ EL ++ FS YFL+V D+I++ Sbjct: 127 -DTYLEELTWNGLMERL--GCRSRSEISETYKTRLERELTIMQERGFSTYFLVVWDYIKY 183 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ +NIPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D DFC +R Sbjct: 184 ARDHNIPVGPGRGSAAGSLVAYALKITNIDPVHHGLLFERFLNPERKSMPDIDTDFCIER 243 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV +YG ++VAQIITF + +KA L+DV R L +PYS+ DRL K+IP P Sbjct: 244 RDEVIEYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYSESDRLAKMIPVARGKP 303 Query: 487 VSL-QAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 L + I+DD+ F++ +D V R ++++ ++EG + HAAG+VI PL ++ Sbjct: 304 AELTKMISDDTPEPEFKKLYDSDEKVRRWVDMAIRIEGTNKTXGVHAAGVVISKEPLDEV 363 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601 P+ ++ + +TQ+ + E GL K FLGLK LT Q++ D L + +G KV L + Sbjct: 364 XPLQKNNDGAV-ITQYXXEDXEAXGLXKMXFLGLKNLTTFQRTADLLRKIKGXKVGLDXL 422 Query: 602 PFDD--------------------HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 P D+ +TY+L+ G+FQLESSGM + ++ ++P IE Sbjct: 423 PLDEIHSRKILAKGEIKNTKPPDIQKTYNLIEKGWLEGVFQLESSGMLKVVQDLKPSSIE 482 Query: 642 DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 D+ ++++LYRPGP+D ++ + +RK+G+E+I+ HP+++P+L ET V++YQEQ+M+IA Sbjct: 483 DLSSILALYRPGPLDAGLIPKFIDRKHGREEIIYEHPILEPILDETYAVMVYQEQIMKIA 542 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q ++GYSL +AD+LRRAMGKK +EM K +E FI GA+KNG+ + A ++F+ + KFA+Y Sbjct: 543 QDMAGYSLGQADLLRRAMGKKKVKEMQKHREIFIDGATKNGVKQETAEHLFDQMIKFAEY 602 >gi|162447106|ref|YP_001620238.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A] gi|161985213|gb|ABX80862.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A] Length = 982 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 335/1023 (32%), Positives = 529/1023 (51%), Gaps = 115/1023 (11%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL---FSALEFSQK---ACAAGI 67 L SSYS+L+ L L I + +AITD NNL + AL S+K G Sbjct: 8 LYTQSSYSILKSTLHLETIFKHAKQENLDFVAITDDNNLHGLYKALVLSKKYQIPLILGF 67 Query: 68 QP---IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 Q ++G LD+ ++ E + LIEL S Sbjct: 68 QKTFKVLGYDLDL----------------------LIYAQNDEALKSLIELNSLT----- 100 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RL 182 ++ I ++ + +I+L P ++F + +++E+ L Sbjct: 101 -ARTPDIPFESCVQLLNKLIIVL------PSTQSFIYQHYEMSERIYEVISSLHKSLKNF 153 Query: 183 YVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ L ++ + + +++ +A +L + T + EE+ +D++ + S S Sbjct: 154 YLGLGNATDFEVDKITPILKKIALNEDLKYLPTYQQSYEDEENKTTYDIVNTIKDSQFKS 213 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + +L +++E+V + +N + R ++ + LP F K D Sbjct: 214 ------LNVSMHLLSKNELVKKYEQEKNIFKNVDAVFGRVNYTYLDNTQSLPVFPTK--D 265 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ E L A GLE RL + K + DY QRL+ EL VI +M + YFLIV Sbjct: 266 NV--ESHIYLYALAHKGLEKRLENSGVRK---STDYIQRLNEELEVIHQMGYDDYFLIVY 320 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+++AK N+I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLN DR SMPD D+D Sbjct: 321 DFVRFAKTNDILVGPGRGSAAGSLVAYCLGITEVDPIQYDLLFERFLNIDRKSMPDIDLD 380 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F +RD VI YV+ KYG V + TF +L K ++RD+ R QM SQ +R+ +I Sbjct: 381 FPDVKRDLVIDYVKEKYGLNHVVTMTTFTNLTTKTSMRDIAR--QMNLSQ-ERINAIIA- 436 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 +H + I D+S REA+ +L++++ +EG+ R TH AGI++ + L+ Sbjct: 437 --SHT---KGILDESD-REAQ-------KLVKVASTIEGIPRQTGTHPAGIILSKQDLTT 483 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVP+ + D+ +Q +E G +K DFLGLK LT+++ D L K+ LS + Sbjct: 484 LVPLMNGPK-DIYQSQLEASDLESLGFLKIDFLGLKNLTMIE---DILKLEQNKLKLSDM 539 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +T+ LL+ G+FQLES GMR + ++P EDI+AL++L+RPGP+ I Y Sbjct: 540 PLDDKKTFELLSNADVEGVFQLESQGMRNVIRKLRPSHFEDIVALLALFRPGPMQFIDDY 599 Query: 662 NNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R++G EK+ S ID +LK T G+I+YQEQ+M+I Q+ +GY LSEAD++RRA+ K Sbjct: 600 IKRRHGDTYEKLDSD---IDEILKPTYGIIVYQEQIMKIFQVYAGYKLSEADIIRRAISK 656 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K ++ +D++K RFI + + A I+ + KFADYGFN+SH+ AYA I+Y A++ Sbjct: 657 KNRDMIDREKARFIEKSVRLNRDAETAEKIYNHIEKFADYGFNRSHSVAYAFIAYYMAYL 716 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 KTHY F++ M+ N +K+ DA+ + + PP++N +DF + I L Sbjct: 717 KTHYYASFISVLMSQNTSNTAYLKELVLDAQNKGLVVYPPNINLSKLDFIPYKSGILAPL 776 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IKG+G TTA+ I+E +PFDS + F +V K LN + +E L+ A ALD FG + Sbjct: 777 TMIKGIGLTTAKKIVEL---QPFDSYDHFKEKV-FKVLNEKSIEILIHANALDVFGLNHK 832 Query: 900 QLL-QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 +LL Q+ N + Q+++ + + E + F+ TL+ E E V Sbjct: 833 ELLDQNNLNQTGFEQFLDDYKKTRLEEL------PFN---TLK-----------EKEIEV 872 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LGF +V + +K +++ +IR M+ S + T+KG + ++ Sbjct: 873 LGFNLKYLKDEVLIRLNETHKLKP-----LSLKEQSIRTIGMIESVKIITTKKGDEMAFI 927 Query: 1019 TFS 1021 TFS Sbjct: 928 TFS 930 >gi|302327802|gb|ADL27003.1| DNA polymerase III, alpha subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1285 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 262/670 (39%), Positives = 377/670 (56%), Gaps = 27/670 (4%) Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 H + +R+ ELN I M +GY LIV DFI W++++ IPVGPGRGS AGS+ Y + I Sbjct: 422 HETNVGKRMYKELNCIRNMNVAGYLLIVWDFINWSREHGIPVGPGRGSAAGSLVTYIIGI 481 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 TDIDPL F LLFERFLNP+R+SMPD D DF R VI+YV +KYG E V QIIT+G L Sbjct: 482 TDIDPLTFDLLFERFLNPERVSMPDIDTDFADRDRGRVIQYVTDKYGKECVGQIITYGML 541 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR----FREARLADP-- 506 ++KA + DV R L +P ++ + KL P + QA + + +P Sbjct: 542 KSKAVITDVARVLGIPPAEAKAITKLFPQRTLNFSLKQAWTGKDKKGNNLEDGYSPEPLQ 601 Query: 507 -------SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 S L +++++LE L R HA G+VI P+ L P+YR D PV ++ Sbjct: 602 AMIGSRASYQNLWDVAKRLEDLPRQTGVHACGVVITPTPIYNLAPLYRAAPEDTPVVMYD 661 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618 + E GL+K DFLGL L+++Q ++ + Q R +K+ ++ IP DD T+ LL T Sbjct: 662 KHYAEDIGLLKMDFLGLINLSIIQDTVKMVEQNRNIKLVMNKIPIDDKATFELLGKGLTT 721 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 +FQ ES GM++ L ++P I D+IA+ +LYRPGPID I + RKNGKE+I HP + Sbjct: 722 TVFQFESPGMQKYLRELKPTRIFDLIAMNALYRPGPIDQIPHFIARKNGKEEIDCYHPDL 781 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + +L ET GVI+YQEQVM++AQ+L GYSL AD +RR M KK+ E+M K + F Sbjct: 782 EQVLGETYGVIVYQEQVMKLAQILGGYSLGGADNIRRIMAKKMPEKMAKLEPEFFQKCLD 841 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 G K + +++ + F Y FNKSHAAAYA ++YQTA++KTHY E++AASMT +M Sbjct: 842 KGYDKAMIQKVWDAVLPFCGYAFNKSHAAAYAYVAYQTAYLKTHYGPEYMAASMTSKMGK 901 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EA 856 E + ++ I ++ P++NT F +I Y LA I+ VG ++ E Sbjct: 902 TEDTVTIILECKRLGIPVLSPNINTSLGVFSANTKGQILYGLAGIRNVGIAVVEDVVAER 961 Query: 857 SADKPFDSLEDFCSRVDSKK---------LNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + DFC RV + LN++VLE L+ AGALD SR ++D Sbjct: 962 ERRGIYKDIFDFCKRVTEYQAAQPEKRPPLNKKVLECLIMAGALDDLPGSRAVQCATVDR 1021 Query: 908 IQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + A ++++ ++F + LE+ + E+ VLG + SG Sbjct: 1022 ALEVAMRSQEDKAKGQVSLFDLGGPAAMPNTAEVLEEAEEWTAMEMLNKERSVLGLFLSG 1081 Query: 966 HPLDVYKPIL 975 HPLD ++P L Sbjct: 1082 HPLDEFRPEL 1091 Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 147/303 (48%), Gaps = 25/303 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL-------EFSQKA 62 +FVHLQ HS +S+L+ + L++IL AA+ PA+A+TD +F L E ++K Sbjct: 2 AFVHLQTHSEFSILQASARLDDILAAAAAENAPAVALTDHGAMFGILEIQTRGKELNKKR 61 Query: 63 CAAGIQP---IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 G+ P + GC + +D + K P T + LLV +GY L+ +VS Sbjct: 62 KEQGLPPVKTVYGCHIYVDTP-----SASQKDP-TTFERLTLLVENEKGYYNLLRIVS-- 113 Query: 120 YLLDQGKQSVRICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Y + G++ I L+ I EG+I + G + +A + + ++ Sbjct: 114 YRYEDGERWAEIPSVPLETINEFKEGIIAIAGDYFSCYGQNVASGRDSLALEYMDRLNEI 173 Query: 178 FG-DRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 F D LY+++ + + ++ V+LA + +VA + ++ ED +H +L ++ Sbjct: 174 FDHDHLYISVCDNGIPQQKHVNEFNVELAKKYGREVVAVGDVHYIKPEDATSHKILRCIS 233 Query: 236 -HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ--VHAPIL 292 T+ +D+ T Y + EMV +F +P A+ENTV+IA RC+F ++ + Sbjct: 234 LKVTLNGFEDKRFPTEKFYFRTEKEMVELFGHIPGAIENTVKIAERCNFTVKTGIGDEFW 293 Query: 293 PRF 295 PRF Sbjct: 294 PRF 296 >gi|94990613|ref|YP_598713.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS10270] gi|94544121|gb|ABF34169.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270] Length = 1036 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 313/1038 (30%), Positives = 517/1038 (49%), Gaps = 126/1038 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + LN+ ++ I I D +NL+ A F + G+QP+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +++I Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + +L Q + +I+ + G S D L V + Sbjct: 102 LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+Y + + + L+ + +++D E +L A+ + +S + P V Sbjct: 135 IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D L + ++ + + + P+AL+N ++ + + LP F + K + Sbjct: 189 SDQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL+ AGL+ KG + Y+ RL EL +I+ M F YFLIV D +++ + Sbjct: 242 QELQELTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R SMPD DID R Sbjct: 294 SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E +RYV+N+YG + AQI+TF + K A+RDV + +P ++ L K I S Sbjct: 354 EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L + + S FR+ + + I++++EG R S HAAGIV+ D L+ +P+ Sbjct: 410 LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ +E GL+K DFLGL+ LT +QK + +A+ G ++D++ I +D Sbjct: 470 G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T GIFQ E +G L+ ++P E+I+A SL RPG D + R+ Sbjct: 528 QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EKI I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK +EM Sbjct: 588 GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +E FI+ A G ++ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 648 KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845 F M + + DA + + Q+ ++N+ P D K+ ++IY L IKG+ Sbjct: 708 FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E +PF+S+EDF +R+ K + LE L+ G DCF +R ++L +L Sbjct: 761 PRDFAYWIIE---QRPFNSVEDFLTRIPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +F +E G+ + ++ S ++ EQ ++G Sbjct: 818 DGLL----------------VFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGM 861 Query: 964 SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 S HPL + PI + + E+V I+ ++IR+ S QQ + Sbjct: 862 SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +++ ++ K+ + FP Sbjct: 911 AFLSVNDTKKKLDVTLFP 928 >gi|261415097|ref|YP_003248780.1| DNA polymerase III, alpha subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371553|gb|ACX74298.1| DNA polymerase III, alpha subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1285 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 262/670 (39%), Positives = 377/670 (56%), Gaps = 27/670 (4%) Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 H + +R+ ELN I M +GY LIV DFI W++++ IPVGPGRGS AGS+ Y + I Sbjct: 422 HETNVGKRMYKELNCIRNMNVAGYLLIVWDFINWSREHGIPVGPGRGSAAGSLVTYIIGI 481 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 TDIDPL F LLFERFLNP+R+SMPD D DF R VI+YV +KYG E V QIIT+G L Sbjct: 482 TDIDPLTFDLLFERFLNPERVSMPDIDTDFADRDRGRVIQYVTDKYGKECVGQIITYGML 541 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR----FREARLADP-- 506 ++KA + DV R L +P ++ + KL P + QA + + +P Sbjct: 542 KSKAVITDVARVLGIPPAEAKAITKLFPQRTLNFSLKQAWTGKDKKGNNLEDGYSPEPLQ 601 Query: 507 -------SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 S L +++++LE L R HA G+VI P+ L P+YR D PV ++ Sbjct: 602 AMIGSRASYQNLWDVAKRLEDLPRQTGVHACGVVITPTPIYNLAPLYRAAPEDTPVVMYD 661 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618 + E GL+K DFLGL L+++Q ++ + Q R +K+ ++ IP DD T+ LL T Sbjct: 662 KHYAEDIGLLKMDFLGLINLSIIQDTVKMVEQNRNIKLVMNKIPIDDKATFELLGKGLTT 721 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 +FQ ES GM++ L ++P I D+IA+ +LYRPGPID I + RKNGKE+I HP + Sbjct: 722 TVFQFESPGMQKYLRELKPTRIFDLIAMNALYRPGPIDQIPHFIARKNGKEEIDCYHPDL 781 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + +L ET GVI+YQEQVM++AQ+L GYSL AD +RR M KK+ E+M K + F Sbjct: 782 EQVLGETYGVIVYQEQVMKLAQILGGYSLGGADNIRRIMAKKMPEKMAKLEPEFFQKCLD 841 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 G K + +++ + F Y FNKSHAAAYA ++YQTA++KTHY E++AASMT +M Sbjct: 842 KGYDKAMIQKVWDAVLPFCGYAFNKSHAAAYAYVAYQTAYLKTHYGPEYMAASMTSKMGK 901 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EA 856 E + ++ I ++ P++NT F +I Y LA I+ VG ++ E Sbjct: 902 TEDTVTIILECKRLGIPVLSPNINTSLGVFSANTKGQILYGLAGIRNVGIAVVEDVVAER 961 Query: 857 SADKPFDSLEDFCSRVDSKK---------LNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + DFC RV + LN++VLE L+ AGALD SR ++D Sbjct: 962 ERRGIYKDIFDFCKRVTEYQAAQPEKRPPLNKKVLECLIMAGALDDLPGSRAVQCATVDR 1021 Query: 908 IQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + A ++++ ++F + LE+ + E+ VLG + SG Sbjct: 1022 ALEVAMRSQEDKAKGQVSLFDLGGPAAMPNTAEVLEEAEEWTAMEMLNKERSVLGLFLSG 1081 Query: 966 HPLDVYKPIL 975 HPLD ++P L Sbjct: 1082 HPLDEFRPEL 1091 Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 148/309 (47%), Gaps = 37/309 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL-------EFSQKA 62 +FVHLQ HS +S+L+ + L++IL AA+ PA+A+TD +F L E ++K Sbjct: 2 AFVHLQTHSEFSILQASARLDDILAAAAAENAPAVALTDHGAMFGILEIQTRGKELNKKR 61 Query: 63 CAAGIQP---IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 G+ P + GC + +D + K P T + LLV +GY L+ +VS Sbjct: 62 KEQGLPPVKTVYGCHIYVDTP-----SASQKDP-TTFERLTLLVENEKGYYNLLRIVS-- 113 Query: 120 YLLDQGKQSVRICLSWLQEIG--TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Y + G++ I L+ I EG+I + G + +A + + ++ Sbjct: 114 YRYEDGERWAEIPSVPLETINEFKEGIIAIAGDYFSRYGQNVASGRDSLALEYMDRLNEI 173 Query: 178 FG-DRLYVNL-------QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 F D LY+++ Q+H + + V+LA + +VA + ++ ED +H Sbjct: 174 FDHDHLYISVCDNGIPQQKH--VNEFN----VELAKKYGREVVAVGDVHYIKPEDATSHK 227 Query: 230 VLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ-- 286 +L ++ T+ +D+ T Y + EMV +F +P A+ENTV+IA RC+F ++ Sbjct: 228 ILRCISLKVTLNGFEDKRFPTEKFYFRTEKEMVELFGHIPGAIENTVKIAERCNFTVKTG 287 Query: 287 VHAPILPRF 295 + PRF Sbjct: 288 IGDEFWPRF 296 >gi|71903627|ref|YP_280430.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS6180] gi|71802722|gb|AAX72075.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180] Length = 1036 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 313/1038 (30%), Positives = 517/1038 (49%), Gaps = 126/1038 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + LN+ ++ I I D +NL+ A F + G+QP+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +++I Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + +L Q + +I+ + G S D L V + Sbjct: 102 LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+Y + + + L+ + +++D E +L A+ + +S + P V Sbjct: 135 IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D L + ++ + + + P+AL+N ++ + + LP F + K + Sbjct: 189 SDQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL++ AGL+ KG + Y+ RL EL +I+ M F YFLIV D +++ + Sbjct: 242 QELQDLTEAGLK--------EKGLWKEPYQSRLLRELVIISDMGFDDYFLIVWDLLRFGR 293 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R SMPD DID R Sbjct: 294 SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E +RYV+N+YG + AQI+TF + K A+RDV + +P ++ L K I S Sbjct: 354 EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L + + S FR+ + + I++++EG R S HAAGIV+ D L+ +P+ Sbjct: 410 LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ +E GL+K DFLGL+ LT +QK + +A+ G ++D++ I +D Sbjct: 470 G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T GIFQ E +G L+ ++P E+I+A SL RPG D + R+ Sbjct: 528 QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EKI I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK +EM Sbjct: 588 GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKNLQEMQ 647 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +E FI+ A G ++ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 648 KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845 F M N + DA + + Q+ ++N+ P D K+ ++IY L IKG+ Sbjct: 708 FYDIMMNYSSSN------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E +PF+S+EDF +R K + LE L+ G DCF +R +++ +L Sbjct: 761 PRDFAYWIVE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKIMDNL 817 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +F +E G+ + ++ S ++ EQ ++G Sbjct: 818 DGLL----------------VFVNELGSLFSDSSFSWVDTKDYSATEKYSLEQEIVGVGM 861 Query: 964 SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 S HPL + PI + + E+V I+ ++IR+ S QQ + Sbjct: 862 SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +++ ++ K+ + FP Sbjct: 911 AFLSVNDTKKKLDVTLFP 928 >gi|21910450|ref|NP_664718.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS315] gi|28896025|ref|NP_802375.1| DNA polymerase III DnaE [Streptococcus pyogenes SSI-1] gi|25452930|sp|Q8K7A1|DPO3A_STRP3 RecName: Full=DNA polymerase III subunit alpha gi|21904649|gb|AAM79521.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS315] gi|28811275|dbj|BAC64208.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes SSI-1] Length = 1036 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 314/1038 (30%), Positives = 516/1038 (49%), Gaps = 126/1038 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + LN+ ++ I I D +NL+ A F + G+QP+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +++I Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + +L Q + +I+ + G S D L V + Sbjct: 102 LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+Y + + + L+ + +++D E +L A+ + +S + P V Sbjct: 135 IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D L + ++ + + + P+AL+N ++ + + LP F + K + Sbjct: 189 SDQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL+ AGL+ KG + Y+ RL EL +I+ M F YFLIV D +++ + Sbjct: 242 QELQELTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R SMPD DID R Sbjct: 294 SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E +RYV+N+YG + AQI+TF + K A+RDV + +P ++ L K I S Sbjct: 354 EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L + + S FR+ + + I++++EG R S HAAGIV+ D L+ +P+ Sbjct: 410 LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ IE GL+K DFLGL+ LT +QK + +A+ G ++D++ I +D Sbjct: 470 G--DDMMITQYDAHAIEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T GIFQ E +G L+ ++P E+I+A SL RPG D + R+ Sbjct: 528 QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EKI I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK +EM Sbjct: 588 GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKNLQEMQ 647 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +E FI+ A G ++ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 648 KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845 F M + + DA + + Q+ ++N+ P D K+ ++IY L IKG+ Sbjct: 708 FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E +PF+S+EDF +R K + LE L+ G DCF +R ++L +L Sbjct: 761 PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +F +E G+ + ++ S ++ EQ ++G Sbjct: 818 DGLL----------------VFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGM 861 Query: 964 SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 S HPL + PI + + E+V I+ ++IR+ S QQ + Sbjct: 862 SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +++ ++ K+ + FP Sbjct: 911 AFLSVNDTKKKLDVTLFP 928 >gi|209559542|ref|YP_002286014.1| DNA polymerase III DnaE [Streptococcus pyogenes NZ131] gi|209540743|gb|ACI61319.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131] Length = 1036 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 313/1038 (30%), Positives = 517/1038 (49%), Gaps = 126/1038 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + LN+ ++ I I D +NL+ A F + G+QP+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +++I Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + +L Q + +I+ + G S D L V + Sbjct: 102 LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+Y + + + L+ + +++D E +L A+ + +S + P V Sbjct: 135 IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D L + ++ + + + P+AL+N ++ + + LP F + K + Sbjct: 189 SDQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL+ AGL+ KG + Y+ RL EL +I+ M F YFLIV D +++ + Sbjct: 242 QELQELTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R SMPD DID R Sbjct: 294 SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E +RYV+N+YG + AQI+TF + +K A+RDV + +P ++ L K I S Sbjct: 354 EFLRYVRNRYGSDHSAQIVTFSTFGSKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L + + S FR+ + + I++++EG R S HAAGIV+ D L+ +P+ Sbjct: 410 LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ +E GL+K DFLGL+ LT +QK + +A+ G ++D++ I +D Sbjct: 470 G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T GIFQ E +G L+ ++P E+I+A SL RPG D + R+ Sbjct: 528 QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EKI I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK +EM Sbjct: 588 GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +E FI+ A G ++ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 648 KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845 F M + + DA + + Q+ ++N+ P D K+ ++IY L IKG+ Sbjct: 708 FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E +PF+S+EDF +R K + LE L+ G DCF +R ++L +L Sbjct: 761 PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +F +E G+ + ++ S ++ EQ ++G Sbjct: 818 DGLL----------------VFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGM 861 Query: 964 SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 S HPL + PI + + E+V I+ ++IR+ S QQ + Sbjct: 862 SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +++ ++ K+ + FP Sbjct: 911 AFLSVNDTKKKLDVTLFP 928 >gi|15675237|ref|NP_269411.1| DNA polymerase III DnaE [Streptococcus pyogenes M1 GAS] gi|71910803|ref|YP_282353.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS5005] gi|81175277|sp|P0C0F3|DPO3A_STRP1 RecName: Full=DNA polymerase III subunit alpha gi|13622407|gb|AAK34132.1| putative DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS] gi|71853585|gb|AAZ51608.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005] Length = 1036 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 313/1038 (30%), Positives = 517/1038 (49%), Gaps = 126/1038 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + LN+ ++ I I D +NL+ A F + G+QP+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +++I Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEIEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + + Q + +I+ + G S D L V + Sbjct: 102 LHMDYFCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+Y + + + L+ + +++D E +L A+ + +S + P V Sbjct: 135 IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D L + ++ + + + P+AL+N ++ + + LP F + K + Sbjct: 189 SDQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL++ AGL+ KG + Y+ RL EL +I+ M F YFLIV D +++ + Sbjct: 242 QELQDLTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R SMPD DID R Sbjct: 294 SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E +RYV+N+YG + AQI+TF + K A+RDV + +P ++ L K I S Sbjct: 354 EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L + + S FR+ + + I++++EG R S HAAGIV+ D L+ +P+ Sbjct: 410 LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDALTNHIPLKS 469 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ +E GL+K DFLGL+ LT +QK + +A+ G ++D++ I +D Sbjct: 470 G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDITAIDLEDP 527 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T GIFQ E +G L+ ++P E+I+A SL RPG D + R+ Sbjct: 528 QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EKI I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK +EM Sbjct: 588 GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +E FI+ A G ++ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 648 KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845 F M + + DA + + Q+ ++N+ P D K+ ++IY L IKG+ Sbjct: 708 FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E +PF+S+EDF +R K + LE L+ G DCF +R ++L +L Sbjct: 761 PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +F +E G+ + ++ SV ++ EQ ++G Sbjct: 818 DGLL----------------VFVNELGSLFSDSSFSWVDTKDYSVTEKYSLEQEIVGVGM 861 Query: 964 SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 S HPL + PI + + E+V I+ ++IR+ S QQ + Sbjct: 862 SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +++ ++ K+ + FP Sbjct: 911 AFLSVNDTKKKLDVTLFP 928 >gi|50914323|ref|YP_060295.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS10394] gi|73919250|sp|Q5XBV1|DPO3A_STRP6 RecName: Full=DNA polymerase III subunit alpha gi|50903397|gb|AAT87112.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394] Length = 1036 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 314/1038 (30%), Positives = 516/1038 (49%), Gaps = 126/1038 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + LN+ ++ I I D +NL+ A F + G+QP+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +++I Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + +L Q + +I+ + G S D L V + Sbjct: 102 LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+Y + + + L+ + +++D E +L A+ + +S + P V Sbjct: 135 IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D L + ++ + + + P+AL+N ++ + + LP F + K + Sbjct: 189 SDQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL+ AGL+ KG + Y+ RL EL +I+ M F YFLIV D +++ + Sbjct: 242 QELQELTEAGLK--------EKGLWKEPYQSRLLHELIIISDMGFDDYFLIVWDLLRFGR 293 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R SMPD DID R Sbjct: 294 SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E +RYV+N+YG + AQI+TF + K A+RDV + +P ++ L K I S Sbjct: 354 EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L + + S FR+ + + I++++EG R S HAAGIV+ D L+ +P+ Sbjct: 410 LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ +E GL+K DFLGL+ LT +QK + +A+ G ++D++ I +D Sbjct: 470 G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T GIFQ E +G L+ ++P E+I+A SL RPG D + R+ Sbjct: 528 QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EKI I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK +EM Sbjct: 588 GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +E FI+ A G ++ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 648 KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845 F M + + DA + + Q+ ++N+ P D K+ ++IY L IKG+ Sbjct: 708 FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E +PF+S+EDF +R K + LE L+ G DCF +R ++L +L Sbjct: 761 PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +F +E G+ + ++ S ++ EQ V+G Sbjct: 818 DGLL----------------VFVNELGSLFSDSSFSWVDTQDYSATEKYSLEQEVVGVGM 861 Query: 964 SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 S HPL + PI + + E+V I+ ++IR+ S QQ + Sbjct: 862 SKHPLIDIAEKSIQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +++ ++ K+ + FP Sbjct: 911 AFLSVNDTKKKLDVTLFP 928 >gi|257458194|ref|ZP_05623348.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580] gi|257444488|gb|EEV19577.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580] Length = 744 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 258/631 (40%), Positives = 375/631 (59%), Gaps = 24/631 (3%) Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFD+DFC +RR EVI YV+ KYG E V QIITFG+L+ KAA++DVGR L++P +V+ Sbjct: 1 MPDFDVDFCFERRQEVIDYVRRKYGDESVGQIITFGTLKPKAAIKDVGRVLEIPLGEVNA 60 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 + K++P+DP +A AD E R +DP L I++KLE L R+ S HAAGIVI Sbjct: 61 ITKMMPSDPKLTFE-KAFADVPELAEMR-SDPRYTELFSIAEKLEDLNRNTSLHAAGIVI 118 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593 G L+ VP+Y+D ++ +QF M IE GL+K DFLGLKTLTL++ + D + +RG Sbjct: 119 GKTKLTDYVPLYKDSKTGKTASQFTMDLIEDCGLVKMDFLGLKTLTLIKHTEDLIKKRGG 178 Query: 594 --VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 + I D T+ +L + +FQ ES GM+ L+ +PD IED+IAL +LYR Sbjct: 179 EYANFSIEQIDEQDAATFKMLGEGKSAAVFQFESQGMQNILKRAKPDKIEDLIALNALYR 238 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+ I + K KI P ++ +L ET GVI+YQEQVMQ+AQ + GYSL +AD Sbjct: 239 PGPMAYIDQFIESKFDSSKIQYPDPCLEDILSETYGVIVYQEQVMQVAQRIGGYSLGQAD 298 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK KE M+K+K RFI GA KN + A IFE+L FA YGFNKSHAAAY+V Sbjct: 299 LLRRAMGKKKKEVMEKEKTRFIEGAVKNNFREKDADRIFEILIPFAGYGFNKSHAAAYSV 358 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++YQTA++K ++P EF+AA++T E+ + +K+ ++ +A + + + P +NT F V Sbjct: 359 LAYQTAYLKANFPAEFMAANLTNEITSTDKLPEYISEANKMGLALHAPDINTSEEYFSVY 418 Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + I + L IKGVG AR I+ E +A P+ S DF R+D +N++ LE L+ G Sbjct: 419 EGDIVFGLLGIKGVGEQAARDIVAERTAHGPYKSFIDFLDRLDLHTVNKKNLEVLIKTGC 478 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--FSDKITLEKFSVENS 948 D G +R +LL +L+ ++ + ++F + G FSD T ++ + Sbjct: 479 FDKLGQNRSELLDNLEAAMAFSAQKKAGSAVGQTSLF-EDTGIKEFSD-FTFKQVNDLPQ 536 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-------KGYEESVATIRGNNIRLAAMV 1001 + E+ ++GFY SGHPLD YK + + + +E + TI G M+ Sbjct: 537 KEKLRIEKELMGFYISGHPLDEYKKAIDRSATLELINFRRAQKEKLYTIVG-------MI 589 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +T+ G +G+ TF + + FF Sbjct: 590 TGIRPYQTKNGKWMGFGTFEDRTGTIDLTFF 620 >gi|306827247|ref|ZP_07460534.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus pyogenes ATCC 10782] gi|304430394|gb|EFM33416.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus pyogenes ATCC 10782] Length = 1036 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 313/1038 (30%), Positives = 516/1038 (49%), Gaps = 126/1038 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + LN+ ++ I I D +NL+ A F + G+QP+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +++I Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + +L Q + +I+ + G S D L V + Sbjct: 102 LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+Y + + + L+ + +++D E +L A+ + +S + P V Sbjct: 135 IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D L + ++ + + + P+AL+N ++ + + LP F + K + Sbjct: 189 SDQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL+ AGL+ KG + Y+ RL EL +I+ M F YFLIV D +++ + Sbjct: 242 QELQELTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R SMPD DID R Sbjct: 294 SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E +RYV+N+YG + AQI+TF + K A+RDV + +P ++ L K I S Sbjct: 354 EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L + + S FR+ + + I++++EG R S HAAGIV+ D L+ +P+ Sbjct: 410 LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ +E GL+K DFLGL+ LT +QK + +A+ G ++D++ I +D Sbjct: 470 G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T GIFQ E +G L+ ++P E+I+A SL RPG D + R+ Sbjct: 528 QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EKI I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK +EM Sbjct: 588 GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +E FI+ A G ++ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 648 KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845 F M + + DA + + Q+ ++N+ P D K+ ++IY L IKG+ Sbjct: 708 FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E +PF+S+EDF +R K + LE L+ G DCF +R ++L +L Sbjct: 761 PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +F +E G+ + ++ S ++ EQ ++G Sbjct: 818 DGLL----------------VFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGM 861 Query: 964 SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 S HPL + PI + + E+V I+ ++IR+ S QQ + Sbjct: 862 SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +++ ++ K+ + FP Sbjct: 911 AFLSVNDTKKKLDVTLFP 928 >gi|226327033|ref|ZP_03802551.1| hypothetical protein PROPEN_00894 [Proteus penneri ATCC 35198] gi|225204251|gb|EEG86605.1| hypothetical protein PROPEN_00894 [Proteus penneri ATCC 35198] Length = 584 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 246/594 (41%), Positives = 353/594 (59%), Gaps = 23/594 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS YS+++G ++ K+A+ PA AITD NL ++F A AGI+ Sbjct: 4 PRFIHLRVHSDYSMIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG D+ ++ L + +L GYQ L L+S Y G Sbjct: 64 PIIGA--DVYLETELLGDEYAH--------LTILARNNVGYQNLTLLISEAYKHGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL EGL++L+GG G + + + + ++ L ++ F D Y+ L R Sbjct: 114 PTIKQEWLTTY-KEGLLLLSGGRMGDVGKFLLRGNRALVDQCLEYYQTHFPDSYYLELIR 172 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R + + V LA LP+VATN+ FL +D++AH++ +A+ +S RP+ Sbjct: 173 TGRTDEETYLHEAVALASEKGLPVVATNDVCFLDSDDFDAHEIRVAIHDGFTLSDPKRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P Y++ EM +F+D+PEALEN+VEIA+RC+ +++ LP+F Sbjct: 233 NYSPQQYMRTEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTG-----NMS 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV +F Sbjct: 288 TEDFLVKKSQEGLEERLAFLFPDPEERKKRRPEYDERLDIELKVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 408 MEKRDRVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 GMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKV 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + A+R KV Sbjct: 527 PLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKV 580 >gi|94994536|ref|YP_602634.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS10750] gi|94548044|gb|ABF38090.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750] Length = 1036 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 313/1038 (30%), Positives = 517/1038 (49%), Gaps = 126/1038 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + LN+ ++ I I D +NL+ A F + G+QP+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +++I Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + +L Q + +I+ + G S D L V + Sbjct: 102 LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+Y + + + L+ + +++D E +L A+ + +S + P V Sbjct: 135 IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D L + ++ + + + P+AL+N ++ + + LP F + K + Sbjct: 189 SDQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL++ AGL+ KG + Y+ RL EL +I+ M F YFLIV D +++ + Sbjct: 242 QELQDLTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R SMPD DID R Sbjct: 294 SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E +RYV+N+YG + AQI+TF + K A+RDV + +P ++ L K I S Sbjct: 354 EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L + + S FR+ + + I++++EG R S HAAGIV+ D L+ +P+ Sbjct: 410 LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHMPLKS 469 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ +E GL+K DFLGL+ LT +QK + +A+ G ++D++ I +D Sbjct: 470 G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T GIFQ E +G L+ ++P E+I+A SL RPG D + R+ Sbjct: 528 QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EKI I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK +EM Sbjct: 588 GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +E FI+ A G ++ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 648 KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845 F M + + DA + + Q+ ++N+ P D K+ ++IY L IKG+ Sbjct: 708 FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E +PF+S+EDF +R K + LE L+ G DCF +R ++L +L Sbjct: 761 PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +F +E G+ + ++ S ++ EQ ++G Sbjct: 818 DGLL----------------VFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGM 861 Query: 964 SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 S HPL + PI + + E+V I+ ++IR+ S QQ + Sbjct: 862 SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +++ ++ K+ + FP Sbjct: 911 AFLSVNDTKKKLDVTLFP 928 >gi|225873142|ref|YP_002754601.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC 51196] gi|225792983|gb|ACO33073.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC 51196] Length = 1072 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 320/1035 (30%), Positives = 528/1035 (51%), Gaps = 71/1035 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V L S++S LEG + ++ ++ AA Q PA+A+ D N L+ A F A G+Q Sbjct: 5 YVELHAASAFSFLEGGSNPESLTERAAALQMPAMALLDRNGLYGAARFHTSAQRHGVQAN 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTP--FPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG ++ + + ++T P +PT P + LL +T +GYQ L +L+SR L + KQ Sbjct: 65 IGAEVAVP-EFGARLTPPAWLPHLWPTEPVRLPLLCATRKGYQNLCQLISRYKLREPSKQ 123 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNL 186 ++ L++ EGLI LTGGS GP+ A +K L +FG + +YV L Sbjct: 124 EGAARVNELEQF-AEGLICLTGGSEGPLAAALMQGGEAAGQKLLHRLTAIFGHQHVYVEL 182 Query: 187 QRHRGYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 QRH +DR +R +++A+ LP+VATN + SE D E D+ A+ H T + + Sbjct: 183 QRH--HDREQEWRNQAALRIAHKLRLPMVATNGVRYASERDREVLDLFTAIRHHTPLDRA 240 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +L++ EM ++F D+P A+ENT+E++ R +F L PR+ D Sbjct: 241 GHLLSANSLRHLRSAREMAALFRDIPAAIENTIELSSRLAFQLSDLGYEFPRYPVPAGDC 300 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL----DFELNVIARMKFSGYFL 358 + ++ LR + G+ +R H D R+ + EL++IAR+ F+GYFL Sbjct: 301 M----DSFLRKRVQEGVALRY------NSRHNHDLLARVHKQVERELSLIARLGFAGYFL 350 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV D I++ K+++I V GRGS A SV YAL IT +DP+ LLFERFLN +R PD Sbjct: 351 IVWDIIRFCKQHDILV-QGRGSAANSVVCYALEITAVDPVGMDLLFERFLNENRGEWPDI 409 Query: 419 DIDF-CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D+D +++R++ I+YV +YG A + + K+A R+VG+AL + RL Sbjct: 410 DLDLPSEEKREQAIQYVYQRYGELGAAMTANVITYRGKSAAREVGKALGFDADALQRLSG 469 Query: 478 LIPN-DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 L+ N + P ++A R A P + R LE+ +++ + RH H+ G+VI Sbjct: 470 LVANFEWKGPTD--SLAHSFRHAGFDPAQPRIARYLELCTRIQDMPRHLGQHSGGMVICQ 527 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595 L+Q+VP+ R V Q++ + G+IK D LGL + +L+ ++ + + G + Sbjct: 528 GQLNQVVPVERASMPGRTVVQWDKEDCADMGIIKVDLLGLGMMAVLKDCVELIPRHYGER 587 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +DL+ +P D Y L T+G+FQ+ES +L P D++ V++ RPGPI Sbjct: 588 IDLAQLP-QDEAVYRTLQRADTVGMFQVESRAQMASLPRNMPAKFYDLVVQVAIIRPGPI 646 Query: 656 DNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 ++ Y R+ GKE + HP ++P+L+ T GV ++QEQ+++IA ++ +S +EA+ L Sbjct: 647 VGKMMHPYMRRRQGKEPVTYPHPSLEPVLQRTLGVPLFQEQLLRIAMTVANFSGTEAEEL 706 Query: 714 RRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 RRA+G ++ E M + + +G + NGI+ I + ++ FA YGF +SHAA++A+I Sbjct: 707 RRAVGMRRSWERMKNLESKLRAGMAANGIAPATQEQIIQQISSFALYGFPESHAASFALI 766 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT---PCVDFK 829 +Y +A++K Y F A + + +DA++ +++ P + PC + Sbjct: 767 AYASAYLKVKYLAAFTCALLNNQPMGFYMPAVIVKDAQRHGLRVKPIDIQISAWPCTLEQ 826 Query: 830 VGDN--RIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLV 886 D+ + L +G+ TA + A + PF S E+ +RV + L+R+ L L Sbjct: 827 EPDDSLSLRLGLGYARGLRQRTAEATLHARQENGPFSSAENLVARVPA--LSRKELALLA 884 Query: 887 FAGALDCFGYSRMQLLQSLDNI--QKYAQWVEKNRTNKHEN-IFAHEKGTFSDKITLEKF 943 GAL+ SLD + ++ A W + R K E +FA ++ Sbjct: 885 RIGALN-----------SLDQVAHRRDALW-QIERAGKPEGPLFAQSNEALREQ------ 926 Query: 944 SVENSSVRFENEQRVLGFYFSG------HPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 V + E+R++ YF HP+ + L GI G +R+ Sbjct: 927 DVALPLMPMTTEERLVADYFGTGLTVGKHPMSYRRQELDHAGILTASALQQFQDGKLVRV 986 Query: 998 AAMVVSKQQKKTRKG 1012 A V+++Q+ T KG Sbjct: 987 AGCVIARQRPGTAKG 1001 >gi|218290516|ref|ZP_03494625.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] gi|218239419|gb|EED06615.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] Length = 1039 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 324/1036 (31%), Positives = 514/1036 (49%), Gaps = 58/1036 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS YS L+GA S+ ++ + AA PA+A+TD N + EF + A G++PI Sbjct: 2 FVHLHCHSPYSFLDGASSIETLVAQAAAQGMPALALTDRNTIAGQPEFHRLAALYGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L ++ L V+L A+G++ L EL++RM++ + + R Sbjct: 62 AGAELTLEDGSQL----------------VVLAEHAKGFRHLCELLTRMHVDARDRADPR 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L E EGL++L+GG G + RA + A + + ++ +FGDR Y+ Sbjct: 106 LREADLFE-RNEGLLILSGGLRGFVQRALARRAYGDARRFVERYRDVFGDRFYLEWTADG 164 Query: 191 --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL--MAVAHSTVVSQKDRP 246 G R R ++ LA +P VA S E+ HDVL + V +RP Sbjct: 165 LPGCAR-RMRDLLDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERP 223 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 YL + +E + F+ P A+ TVEIA RCS + P+ P + + Sbjct: 224 -FNRLGYLHDEAEAMRRFAQDPRAMARTVEIAERCSPVFPAEGPLFPEYRDASG------ 276 Query: 307 EENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 V LE + +GA + G + + R RL+ EL +I + ++ YFL+V D ++ Sbjct: 277 ------RGGVEFLEQLVWRGARERYGKVSPELRIRLEHELAIIRDLGYADYFLVVWDIVR 330 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ I GRGS A SV AY L +TD+D L +LLFERFL+ +R PD DIDF D Sbjct: 331 YARSRGIRCA-GRGSAADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASD 389 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV +YG +RVA++ T+ + +A++A+R+VGR +P +D+L K IP Sbjct: 390 RRDEVIDYVYRRYGRDRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHA 449 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +A+ R+ + + +L +S+++ G RH TH GIVI PL ++ + Sbjct: 450 DEIEEALERVPELRDFQPYRRAFQWMLAVSRQIAGFPRHFGTHTGGIVISGEPLMKVTSL 509 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 L +T ++ + +E GL+K D L L+T+ ++ +L R VD IP DD Sbjct: 510 QPSASGWL-ITPYDKRLLEDVGLVKLDLLSLRTMAAVEGALRLGTARA--VDYDHIPMDD 566 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 T+ + T+G+FQLES R + + +ED++A V+L RPGPI +V + Sbjct: 567 EATFASIRRGDTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLA 626 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIK 722 R+ G E + +HP ++P+L +T GV+++QEQV++IA ++G++ EAD LRR M + + Sbjct: 627 RRRGLEPVSYLHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSR 686 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EM++ ERF+ A G+ A +F + +A YGF ++HAAA+A +Y+TA++ H Sbjct: 687 AEMEQIGERFVQKAVHQGVPLETAQTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEH 746 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAA 841 +P F AA + C +AR+ ++I+P +N D V + + I Sbjct: 747 HPASFFAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRL 806 Query: 842 IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFGYSRM 899 I+ AR ++E A PF L D +RV + + E L+ AGA D R Sbjct: 807 IRSFSERVARALVEERQASGPFRCLSDAVTRV--PQADALHFERLIRAGAFDRVESRDRR 864 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENS-SVRFENEQ 956 +LL L + R K +F D I L + S + R +E Sbjct: 865 ELLWQLPRLLVL-------RKEKALALFDTISAPSPAEDAIRLPQSMPPMSLAERIADEY 917 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 VLG SGH L +Y+ LR G E G +++A + + + T+ G + Sbjct: 918 SVLGVGVSGHWLSLYREALRSEGYCTLAEVGEKREGARVKVAGLSIRPHRPPTKSGKTVV 977 Query: 1017 WVTFSEPAKEYEANFF 1032 + T + +A F Sbjct: 978 FFTLEDETGIADAVMF 993 >gi|94988724|ref|YP_596825.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS9429] gi|94992547|ref|YP_600646.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS2096] gi|94542232|gb|ABF32281.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429] gi|94546055|gb|ABF36102.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096] Length = 1036 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 312/1038 (30%), Positives = 516/1038 (49%), Gaps = 126/1038 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + LN+ ++ I I D +NL+ A F + G+QP+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +++I Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + +L Q + +I+ + G S D L V + Sbjct: 102 LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+Y + + + L+ + +++D E +L A+ + +S + P V Sbjct: 135 IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D L + ++ + + + P+AL+N ++ + + LP F + K + Sbjct: 189 SDQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL++ AGL+ KG + Y+ RL EL +I+ M F YFLIV D +++ + Sbjct: 242 QELQDLTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R SMPD DID R Sbjct: 294 SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E +RYV+N+YG + AQI+TF + K A+RDV + +P ++ L K I S Sbjct: 354 EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L + + S FR+ + + I++++EG R S HAAGIV+ D L+ +P+ Sbjct: 410 LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ +E GL+K DFLGL+ LT +QK + +A+ G ++D++ I +D Sbjct: 470 G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T GIFQ E +G L+ ++P E+I+A SL RPG D + R+ Sbjct: 528 QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EKI I P+I +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK +EM Sbjct: 588 GQEKIDLIDPVIASILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +E FI+ A G ++ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 648 KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845 F M + + DA + + Q+ ++N+ P D K+ ++IY L IKG+ Sbjct: 708 FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E +PF+S+EDF +R K + LE L+ G DCF +R ++L +L Sbjct: 761 PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 817 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +F +E G+ + ++ S ++ EQ ++G Sbjct: 818 DGLL----------------VFVNELGSLFSDSSFSWVDTKDYSATEKYSLEQEIVGVGM 861 Query: 964 SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 S HPL + PI + + E+V I+ ++IR+ S QQ + Sbjct: 862 SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +++ ++ K+ + FP Sbjct: 911 AFLSVNDTKKKLDVTLFP 928 >gi|258511002|ref|YP_003184436.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477728|gb|ACV58047.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1039 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 324/1035 (31%), Positives = 521/1035 (50%), Gaps = 56/1035 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS YS L+GA S+ ++ + AA PA+A+TD N + EF + A A G++PI Sbjct: 2 FVHLHCHSPYSFLDGASSIEALVAQAAAQGMPALALTDRNTIAGQPEFHRLAAAYGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L M+D ++ V+L A G++ L EL++RM++ + + R Sbjct: 62 AGAELT--MEDGSQL--------------VVLAEHATGFRHLCELLTRMHVDARDRADPR 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L E +EGL++L+GG G + RA + A + + ++ +FGDR Y+ Sbjct: 106 LREADLFE-RSEGLLILSGGLRGFVQRALARRAYGDARRFVERYRNVFGDRFYLEWTADG 164 Query: 191 --GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL--MAVAHSTVVSQKDRP 246 G R R ++ LA +P VA S E+ HDVL + V +RP Sbjct: 165 LPGCAR-RMRDLLDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERP 223 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 YL + +E + F+ P A+ TVEIA RCS + P+ P E D Sbjct: 224 -FNRLGYLHDEAEAMRRFAQDPRAMARTVEIAERCSPVFPAEGPLFP-----EYRDASGR 277 Query: 307 EENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 EL LE + QGA + G + + + RL+ E +I + ++ YFL+V D ++ Sbjct: 278 GGVEL-------LEQLVWQGARKRYGKVSPELQMRLEHEFAIIRDLGYADYFLVVWDIVR 330 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ I GRGS A SV AY L +TD+D L +LLFERFL+ +R PD DIDF D Sbjct: 331 YARSRGIRCA-GRGSAADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASD 389 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV +YG +RVA++ T+ + +A++A+R+VGR +P +D+L K IP Sbjct: 390 RRDEVIDYVYRRYGRDRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHA 449 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +A+ R+ + + +L +S+++ G R+ TH GIVI PL ++ + Sbjct: 450 DEIEEALERVPELRDFQPYRRAFQWMLAVSRQIAGFPRYFGTHTGGIVISGEPLMKVTSL 509 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 L +T ++ + +E GL+K D L L+T+ ++ +L R VD IP DD Sbjct: 510 QPSASGWL-ITPYDKRLLEDVGLVKLDLLSLRTMAAVEGALRLGTARA--VDYDHIPMDD 566 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 T+ + T+G+FQLES R + + +ED++A V+L RPGPI +V + Sbjct: 567 EATFASIRRGDTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLA 626 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIK 722 R+ G E + +HP ++P+L +T GV+++QEQV++IA ++G++ EAD LRR M + + Sbjct: 627 RRRGLEPVSYLHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSR 686 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EM++ ERF+ A + G+ A +F + +A YGF ++HAAA+A +Y+TA++ H Sbjct: 687 AEMEQIGERFVQKAVRQGVPLETAKTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEH 746 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAA 841 +P F AA + C +AR+ ++I+P +N D V + + I Sbjct: 747 HPASFFAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRL 806 Query: 842 IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 I+ AR ++E A F SL D R+ + + E L+ AGA D R++ Sbjct: 807 IRSFSERVARALVEERQAFGSFRSLADAVMRL--PQADALHFERLIRAGAFD-----RVE 859 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENS-SVRFENEQR 957 + + + +W+ R K +F D I L + S + R +E Sbjct: 860 SRDRRELLWQLPRWL-ALRKEKALALFDTISAPSPAEDAIRLPQSMPPMSLAERIADEYS 918 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 VLG SGH L +Y+ LR G E+ G +++A + + + T+ G + + Sbjct: 919 VLGVGVSGHWLSLYREALRNEGYCTLAEAGEKREGARVKVAGLSIRPHRPPTKSGKTVVF 978 Query: 1018 VTFSEPAKEYEANFF 1032 T + +A F Sbjct: 979 FTLEDETGIADAVMF 993 >gi|19746207|ref|NP_607343.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS8232] gi|25452932|sp|Q8P0S5|DPO3A_STRP8 RecName: Full=DNA polymerase III subunit alpha gi|19748390|gb|AAL97842.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS8232] Length = 1036 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 312/1038 (30%), Positives = 516/1038 (49%), Gaps = 126/1038 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + LN+ ++ I I D +NL+ A F + G+QP+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +++I Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + +L Q + +I+ + G S D L V + Sbjct: 102 LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+Y + + + L+ + +++D E +L A+ + +S + P V Sbjct: 135 IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D L + ++ + + + P+AL+N ++ + + LP F + K + Sbjct: 189 SDQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL++ AGL+ KG + Y+ RL EL +I+ M F YFLIV D +++ + Sbjct: 242 QELQDLTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R SMPD DID R Sbjct: 294 SKGYYMGMGRGSAAGSLVAYALDITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E +RYV+N+YG + AQI+TF + K A+RDV + +P ++ L K I S Sbjct: 354 EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L + + S FR+ + + I++++EG R S HAAGIV+ D L+ +P+ Sbjct: 410 LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ +E GL+K DFLGL+ LT +QK + +A+ G ++D++ I +D Sbjct: 470 G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T GIFQ E +G L+ ++P E+I+A SL RPG D + R+ Sbjct: 528 QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EKI I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK +EM Sbjct: 588 GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +E FI+ A G ++ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 648 KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845 F M + + DA + + Q+ ++N+ P D K+ ++IY L IKG+ Sbjct: 708 FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E +PF+S+EDF +R K + LE L+ G D F +R ++L +L Sbjct: 761 PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDYFEPNRKKILDNL 817 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +F +E G+ + ++ S ++ EQ ++G Sbjct: 818 DGLL----------------VFVNELGSLFSDSSFSWVDTKDYSATEKYSLEQEIVGVGM 861 Query: 964 SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 S HPL + PI + + E+V I+ ++IR+ S QQ + Sbjct: 862 SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +++ ++ K+ + FP Sbjct: 911 AFLSVNDTKKKLDVTLFP 928 >gi|139473654|ref|YP_001128370.1| DNA polymerase III DnaE [Streptococcus pyogenes str. Manfredo] gi|134271901|emb|CAM30139.1| DNA polymerase III alpha subunit [Streptococcus pyogenes str. Manfredo] Length = 1036 Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust. Identities = 312/1038 (30%), Positives = 515/1038 (49%), Gaps = 126/1038 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + LN+ ++ I I D +NL+ A F + G+QP+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +++I Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEVEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + +L Q + +I+ + G S D L V + Sbjct: 102 LHMDYLCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+Y + + + L+ + +++D E +L A+ + +S + P V Sbjct: 135 IGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D L + ++ + + + P+AL+N ++ + + LP F + K + Sbjct: 189 SDQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL+ AGL+ KG + Y+ RL EL +I+ M F YFLIV D +++ + Sbjct: 242 QELQELTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R SMPD DID R Sbjct: 294 SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E +RYV+N+YG + AQI+TF + K A+RDV + +P ++ L K I S Sbjct: 354 EFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 409 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L + + S FR+ + + I++++EG R S HAAGIV+ D L+ +P+ Sbjct: 410 LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKS 469 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ +E GL+K DFLGL+ LT +QK + +A+ G ++D++ I +D Sbjct: 470 G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDP 527 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T GIFQ E +G L+ ++P E+I+A SL RPG D + R+ Sbjct: 528 QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 587 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EKI I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK +EM Sbjct: 588 GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 647 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +E FI+ A G ++ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 648 KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845 F M + + DA + + Q+ ++N+ P D K+ ++IY L IKG+ Sbjct: 708 FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 760 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E +PF+S+EDF +R K + LE L+ G D F +R ++L +L Sbjct: 761 PRDFAYWIIE---QRPFNSVEDFLTRAPEKYQKKFFLEPLIKIGLFDYFEPNRKKILDNL 817 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +F +E G+ + ++ S ++ EQ ++G Sbjct: 818 DGLL----------------VFVNELGSLFSDSSFSWVDTKDYSATEKYSLEQEIVGVGM 861 Query: 964 SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 S HPL + PI + + E+V I+ ++IR+ S QQ + Sbjct: 862 SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 910 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +++ ++ K+ + FP Sbjct: 911 AFLSVNDTKKKLDVTLFP 928 >gi|76363557|sp|P0C0F2|DPO3A_STRPY RecName: Full=DNA polymerase III subunit alpha gi|9789551|gb|AAF98350.1| DNA polymerase III alpha subunit [Streptococcus pyogenes] Length = 1034 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 312/1038 (30%), Positives = 516/1038 (49%), Gaps = 128/1038 (12%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + LN+ ++ I I D +NL+ A F + G+QP+ Sbjct: 2 FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +++I Q+ + N L+ +GY +L+++ + K S + Sbjct: 62 LGLEIEILYQERQVLLN-------------LIAQNTQGYHQLLKIST-------AKMSGK 101 Query: 131 ICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + + Q + +I+ + G S D L V + Sbjct: 102 LHMDYFCQHLEGIAVIIPSKGWS---------------------------DTLVVPFDYY 134 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+Y + + + L+ + +++D E +L A+ + +S + P V Sbjct: 135 MGVDQYTDLSHMD----SKRQLIPLRTVRYFAQDDMETLHMLHAIRDN--LSLAETPVVE 188 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D L + ++ + + + P+AL+N ++ + + LP F + K + Sbjct: 189 SDQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNLK-LPHF------NRDKSAK 241 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL++ AGL+ KG + Y+ RL EL +I+ M F YFLIV D +++ + Sbjct: 242 QELQDLTEAGLK--------EKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGR 293 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R SMPD DID R Sbjct: 294 SKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRS 353 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E +RYV+N+YG + AQI+TF + A+RDV + +P ++ L K I S Sbjct: 354 EFLRYVRNRYGSDHSAQIVTFSTF--GQAIRDVFKRFGVPEYELTNLTKKI----GFKDS 407 Query: 489 LQAIADDS-RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L + + S FR+ + + I++++EG R S HAAGIV+ D L+ +P+ Sbjct: 408 LATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDALTNHIPLKS 467 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ +E GL+K DFLGL+ LT +QK + +A+ G ++D++ I +D Sbjct: 468 G--DDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDITAIDLEDP 525 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T GIFQ E +G L+ ++P E+I+A SL RPG D + R+ Sbjct: 526 QTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRRE 585 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EKI I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK +EM Sbjct: 586 GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQ 645 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K +E FI+ A G ++ A +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP Sbjct: 646 KMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 705 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGV 845 F M + + DA + + Q+ ++N+ P D K+ ++IY L IKG+ Sbjct: 706 FYDIMMNYSSSD------YITDALESDFQVAQVTINSIPYTD-KIEASKIYMGLKNIKGL 758 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E +PF+S+EDF +R K + LE L+ G DCF +R ++L +L Sbjct: 759 PRDFAYWIIE---QRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNL 815 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYF 963 D + +F +E G+ + ++ SV ++ EQ ++G Sbjct: 816 DGLL----------------VFVNELGSLFSDSSFSWVDTKDYSVTEKYSLEQEIVGVGM 859 Query: 964 SGHPL--------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 S HPL + PI + + E+V I+ ++IR+ S QQ + Sbjct: 860 SKHPLIDIAEKSTQTFTPISQ---LVKESEAVVLIQIDSIRIIRTKTSGQQ--------M 908 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +++ ++ K+ + FP Sbjct: 909 AFLSVNDTKKKLDVTLFP 926 >gi|237732881|ref|ZP_04563362.1| DNA polymerase III subunit alpha [Mollicutes bacterium D7] gi|229384034|gb|EEO34125.1| DNA polymerase III subunit alpha [Coprobacillus sp. D7] Length = 1034 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 291/961 (30%), Positives = 489/961 (50%), Gaps = 125/961 (13%) Query: 155 IDRAFFFNSSQVAEKRLLTFKKLFGDRLYV------NLQRHRGY--DRYRESQVVQLAYT 206 + FF++ A+K L + +FG + +Q + + + +S++ Y Sbjct: 5 VSSGFFYD----ADKLLDEYTNIFGKNNVIIEISLHGIQSEKDFINSNWLQSKIFNEGYM 60 Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR----------VTPDHYLKN 256 + VATN+ +L++E A+ S +S P + Y K Sbjct: 61 Y----VATNDIYYLNKEH--------ALHRSIGLSMNPNPDGIDEYSNYVDYNSEFYFKT 108 Query: 257 RSEMVSIFS----DLPEALENTVEIARRCSFILQVHAPI---LPRFIEKECDDIQKEEEN 309 EM +FS P+ L N+ +I ++C+ PI LP F E Sbjct: 109 EKEMEKVFSAYLHKYPDLLTNSEKIVKQCN----AQVPIERALPEFPLPNG----FSSEQ 160 Query: 310 ELRNKAVAGLEVRLA-QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L G + + + AI + +DY++RL+ E + I +M F YFLIV DFI W+K Sbjct: 161 YLYKLVWEGFKEKFPNESAIDNRFTLEDYKERLEHEFDTIVKMGFVDYFLIVQDFINWSK 220 Query: 369 --------------------------KN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 KN I VGPGRGS AGS+ AY L IT++DP+++ Sbjct: 221 DIEVYKHPEVYFPHIELSKVSKMCIEKNFEIKVGPGRGSAAGSLLAYCLKITNLDPMKYD 280 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD DIDF R++V+ YVQNKYG+ VAQI+TF L+ K+ ++ V Sbjct: 281 LLFERFLNPERVSMPDVDIDFSNRDREKVVEYVQNKYGYSHVAQIVTFQKLKLKSIIKKV 340 Query: 462 GRALQMPYSQVDRLCKLIPND---------------PAHPVSLQAIADDSRFREARLADP 506 ++ +PYS+ D + K+IP P L I + F D Sbjct: 341 AKSYGIPYSKTDEMTKMIPGKICVSTEKEDGTIEIVEKEPELLCEIENIDYFSNLINKDD 400 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 + + ++ + LEGL HAAG++IG +PL +P+ +V L VTQF K E Sbjct: 401 DIKLVFKMGKVLEGLTSTTGKHAAGVIIGRQPLQSYLPL-MEVDGVL-VTQFEKKASESI 458 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GL+K DFLGL+TL ++Q++ + + + ++ ++ I +D +T+ + T +FQ E Sbjct: 459 GLLKMDFLGLQTLDIIQETEELVKENYNQIIHINDISIEDEKTFEIFQKGNTGRVFQFEG 518 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 +GM+ L+ M P +E + A +LYRPGP+D I Y + KI H L + +ET Sbjct: 519 AGMKNLLKQMHPTSLEHLNAACALYRPGPMDYIPNYIEGRKFPNKIDYPHELFKEVAEET 578 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+++YQEQ+MQ+ Q ++G+SL EAD+LRR + KK K+ +DK +++F+ G K +++ Sbjct: 579 FGILVYQEQIMQLVQKMAGFSLGEADILRRGISKKEKDYLDKARKQFVDGCKKINVAEET 638 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 + I++ + FA+YGFNKSH+ AY+ +SYQT W+K H+P F+AA++T+ N +K+ Sbjct: 639 SSKIYDTIELFAEYGFNKSHSCAYSYVSYQTGWLKAHFPEAFMAANLTVAAQNKDKVAAI 698 Query: 806 CQDARQFNIQIMPPSVNTP----CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861 + ++ I+++PP +N ++ K G I + AI+ VG A+ + K Sbjct: 699 LSECKKMQIEVLPPDINKSEDKFTLENKNGKMCIRFGFNAIQDVGEQFAKQCSRKNK-KS 757 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 S ++F + ++ +L + L ++ +GA D +G +R+ L + L+N+ +Y + ++ Sbjct: 758 LTSFQEFLNELNISQLRKDTLTFMINSGAFDNYG-TRLALNKELENLLEYEKAKKRINLV 816 Query: 922 KHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KM 978 ++ + + + D + L+K NE+ + F SGH LD Y+ + + K Sbjct: 817 GYKFVLSLPTNNYFDGYEYPLDKL--------VSNEKEAIHFSLSGHILDGYRNLYQEKT 868 Query: 979 GI------KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + Y +S ++ G ++ + +Q T+KGS++ +++ + E E F Sbjct: 869 AIADIKIDQSYYDSYVSVLG-------IIKNIKQITTKKGSQMAFLSLEDETGELEGVIF 921 Query: 1033 P 1033 P Sbjct: 922 P 922 >gi|312862976|ref|ZP_07723216.1| DNA polymerase III, alpha subunit [Streptococcus vestibularis F0396] gi|322516651|ref|ZP_08069564.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus vestibularis ATCC 49124] gi|311101836|gb|EFQ60039.1| DNA polymerase III, alpha subunit [Streptococcus vestibularis F0396] gi|322124816|gb|EFX96243.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus vestibularis ATCC 49124] Length = 1036 Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust. Identities = 312/1028 (30%), Positives = 518/1028 (50%), Gaps = 106/1028 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L S YS ++ + LN + + +I + D +NL++A F+Q A G++P+ Sbjct: 2 FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + ++ + K PF LL +GY+ L++L + L G++ Sbjct: 62 IGIEANL-------FYDGRKIPFR------LLAKNNQGYKNLMKLATE---LSSGQREFT 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + +L +I LI+ S+ E + G +++ + R Sbjct: 106 LFSDYLNDIA---LII----------------PSEDWEPGMS-----LGSEVFIGV---R 138 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D +E + P+V + + D L A++ + +S+ + P Sbjct: 139 PEDAGKE---------FDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEAS---ICP 186 Query: 251 -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + L + EM S +SD+PEAL N ++ ++ LPRF ++ + + Sbjct: 187 MNQLLFSPQEMESAYSDIPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----D 239 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 +LR A +GL+ +K Y++RLD EL++I +M F YFLIV D +++ + Sbjct: 240 QLRQLAQSGLD--------SKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRS 291 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +G GRGS AGS+ AY L IT IDP++ LLFERFLN +R SMPD DID R E Sbjct: 292 RGYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSE 351 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 + YV+++YG + AQI+TF + AK A+RDV + ++ +L K I + +L Sbjct: 352 FLHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKI----SFRDNL 407 Query: 490 QAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 ++ + + FR+ R EI++ +EG R S HAAGIV+ D L+ +P+ Sbjct: 408 TSVYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--K 465 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D+ VTQ++ +E GL+K DFLGL+ LT +QK + L + +G+ +D+ I +D + Sbjct: 466 TGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQ 525 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L + T GIFQ E +G L+ ++P E+++A SL RPG D + RK G Sbjct: 526 TLALFASGKTKGIFQFEQAGAINLLKRIKPTKFEEVVATTSLNRPGASDYTDNFIARKYG 585 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEK+ I P++ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK EM K Sbjct: 586 KEKVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKDANEMSK 645 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 E F+ G+ + G IA +F ++AKFA YGFN+SHA AY+ +++Q A+ KTHYP F Sbjct: 646 MSEEFMKGSRRFGRDPQIAERLFSMMAKFAGYGFNRSHAYAYSALAFQLAYFKTHYPQIF 705 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846 + + + +DA + + +N P +D K+ D +I L IKG+ Sbjct: 706 YDVMLNYSSSD------YIKDAIENGFSLASLDINRIPYLD-KISDGKIVLGLKTIKGLP 758 Query: 847 TTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E + + S+EDF +R+ SK +L L+ G D F +R +++ +L Sbjct: 759 RDFALWIIEERKQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDIFEPNRQKIIGNL 818 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 N+ + N+ ++FA ++ + E +S + R+ EQ +LG S Sbjct: 819 SNLFTF--------VNELGSLFAESSYSW---VEYEDYS---QTERYSIEQDLLGVGLST 864 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HPL + +KM + Y+ + + + S + +T+KG ++ +++ + Sbjct: 865 HPLH----LAQKMTSRPYQPISELALNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVN 920 Query: 1026 EYEANFFP 1033 + + FP Sbjct: 921 KLDVTLFP 928 >gi|55823117|ref|YP_141558.1| DNA polymerase III DnaE [Streptococcus thermophilus CNRZ1066] gi|55739102|gb|AAV62743.1| DNA polymeraDNA polymerase III alphase III alpha subunit [Streptococcus thermophilus CNRZ1066] Length = 1036 Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust. Identities = 313/1028 (30%), Positives = 511/1028 (49%), Gaps = 106/1028 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L S YS ++ + LN + + +I + D +NL++A F+Q A G++P+ Sbjct: 2 FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + ++ + K PF LL +GY+ LI+L + L G++ Sbjct: 62 IGTEANLFYEGR-------KIPFR------LLAKNNQGYKNLIKLATE---LSSGQREFT 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 +L +I ++L P G +++ + R Sbjct: 106 YFSDYLNDIA----LILPSEDWEP--------------------GMSLGSEVFIGV---R 138 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D +E + P+V + + D L A++ + +S+ + P Sbjct: 139 PEDAGKE---------FDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVS---ICP 186 Query: 251 -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + L + EM +S LPEAL N ++ S+ + LPRF +E + + Sbjct: 187 MNQLLFSAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNLK-LPRF-NREMPAV-----D 239 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 +LR A +GL+ +K Y++RLD EL++I +M F YFLIV D +++ + Sbjct: 240 QLRQLAQSGLD--------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRS 291 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +G GRGS AGS+ AY L IT IDP++ LLFERFLN +R SMPD DID R E Sbjct: 292 RGYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNKERYSMPDIDIDLPDIYRSE 351 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVS 488 + YV+++YG + AQI+TF + AK A+RDV + ++ +L K I D V Sbjct: 352 FLHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDTLTTVY 411 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + ++ FR+ R EI++ +EG R S HAAGIV+ D L+ +P+ Sbjct: 412 EKNMS----FRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--K 465 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D+ VTQ++ +E GL+K DFLGL+ LT +QK + L + +G+ +D+ I +D + Sbjct: 466 AGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQ 525 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L + T GIFQ E +G L+ ++P E+++A SL RPG D + RK G Sbjct: 526 TLALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYG 585 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEK+ I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK EM K Sbjct: 586 KEKVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSK 645 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 E+F+ G+ + G +A +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP F Sbjct: 646 MSEQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSALAFQLAYFKTHYPQIF 705 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846 + + + +DA + + +N P +D K+ D +I L IKG+ Sbjct: 706 YDVMLNYSSSD------YIRDAIENGFSLASLDINRIPYMD-KISDGKIVLGLKTIKGLP 758 Query: 847 TTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E + + S+EDF +R+ SK +L L+ G D F +R +++ +L Sbjct: 759 RDFALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRQKIIGNL 818 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 N+ + N+ ++FA ++ + E +S + R+ EQ +LG S Sbjct: 819 SNLFTF--------VNELGSLFAESSYSW---VEYEDYS---QTERYSIEQDLLGVGLST 864 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HPL + +KM + Y+ + + + S + +T+KG ++ +++ + Sbjct: 865 HPLH----LAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVN 920 Query: 1026 EYEANFFP 1033 + + FP Sbjct: 921 KLDVTLFP 928 >gi|157149864|ref|YP_001450622.1| DNA polymerase III DnaE [Streptococcus gordonii str. Challis substr. CH1] gi|157074658|gb|ABV09341.1| DNA-directed DNA polymerase III alpha chain [Streptococcus gordonii str. Challis substr. CH1] Length = 1033 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 316/1026 (30%), Positives = 505/1026 (49%), Gaps = 109/1026 (10%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 L + YS ++ +S+ ++K + I D +NL+ A F ++ AAGIQ ++G Sbjct: 4 QLDTKTVYSFMDSLVSIKKYVEKAKEFGYSHLGIMDMDNLYGAYHFLEETKAAGIQGLLG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 L++ ++D +T + LL ++GY+ L++ VS + +LD+ + S Sbjct: 64 LDLNL-VKDGQPLT------------LRLLAINSQGYRNLMK-VSTLIMLDKKEWSD--- 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 +Q + +GL ++ G D G Y+ + Sbjct: 107 ---IQHL-MQGLALIVPAYPGIDDLDL-------------------GKDYYIGVS----- 138 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 + +Q LPL + D E +L A+ + VS ++ + Sbjct: 139 ----PTTPLQEFSRPTLPLYTVR---YFDTGDLETLQMLRAIREN--VSLREVGDLPSGQ 189 Query: 253 YLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 +L ++ IF PE+LEN + R + + LPRF + ++ EL Sbjct: 190 HLLRPEQLRQIFEQTFPESLENLEGLVRDIHYDIDTELK-LPRF------NPERPAVEEL 242 Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 R ++ AGL+ R G + Y++RLD EL VI +M F YFLIV D +++ + Sbjct: 243 RERSEAGLKKR--------GLTSSLYQERLDQELAVIHKMGFDDYFLIVWDLLRFGRSQG 294 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 +G GRGS GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID R E I Sbjct: 295 YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERFTMPDIDIDIPDVYRPEFI 354 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVSLQ 490 RYV+++YG AQI+T+ + AK A+RDV + + ++ + K I D + + Sbjct: 355 RYVRDRYGTLHAAQIVTYSTFGAKQAIRDVFKRFGVAEYELTNITKKIRFGDNLNTAYEK 414 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 IA FR+ + + +I++K+EG R S HAAG+V+ D L+ +P+ Sbjct: 415 NIA----FRQIINSKLEYQKAFDIAKKIEGNPRQTSIHAAGVVMSDNDLTDQIPL--KYG 468 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETY 609 D+ +TQ++ +E GL+K DFLGL+ LT +Q+ + L + + + + I +D +T Sbjct: 469 EDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEAVLKKYEIDIQIESIDLEDKKTL 528 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T GIFQ E G L+ +QP C E+++A SL RPG D I + RK+G+E Sbjct: 529 QLFAAGDTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGRE 588 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +VSI +D +L T G+++YQEQVMQ+AQ G+SL +AD+LRRAMGKK EM K + Sbjct: 589 AVVSIDESLDDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNALEMHKME 648 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 E F+SGA K G S+ A +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP F Sbjct: 649 EEFVSGAMKLGHSEKKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPEVFFD 708 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 + + + DA F ++ P ++NT K +N+I+ L IKG+ Sbjct: 709 VLLNYSSSD------YITDALSFGFKLAPLTINTVPYRDKFEENQIFLGLKNIKGLPRDL 762 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 A I+E ++PF +EDF R+ S+ L L+ G D F +R +++ +L N+ Sbjct: 763 AYWIIE---ERPFTGIEDFLLRLPSQYRKESFLIPLIQIGLFDSFESNRQKIISNLSNL- 818 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV--RFENEQRVLGFYFSGHP 967 IF E G+ + VE+ S +FE EQ +LG S HP Sbjct: 819 ---------------FIFVEELGSLFADSSYSWTEVEDYSQAEKFELEQSILGVGLSDHP 863 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L + K + + ++ A V S + +T+ G + ++ ++ K+ Sbjct: 864 L----MTIANATTKSFTWIGDLAENSRAKILAQVQSIKVIRTKNGENMAFLQVTDTKKKL 919 Query: 1028 EANFFP 1033 + FP Sbjct: 920 DVTLFP 925 >gi|55821207|ref|YP_139649.1| DNA polymerase III DnaE [Streptococcus thermophilus LMG 18311] gi|55737192|gb|AAV60834.1| DNA polymeraDNA polymerase III alphase III alpha subunit [Streptococcus thermophilus LMG 18311] Length = 1036 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 313/1028 (30%), Positives = 511/1028 (49%), Gaps = 106/1028 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L S YS ++ + LN + + +I + D +NL++A F+Q A G++P+ Sbjct: 2 FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + ++ + K PF LL +GY+ LI+L + L G++ Sbjct: 62 IGTEANLFYEGR-------KIPFR------LLAKNNQGYKNLIKLATE---LSSGQREFT 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 +L +I ++L P G +++ + R Sbjct: 106 YFSDYLNDIA----LILPSEDWEP--------------------GMSLGSEVFIGV---R 138 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D +E + P+V + + D L A++ + +S+ + P Sbjct: 139 PEDAGKE---------FDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVS---ICP 186 Query: 251 -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + L + EM +S LPEAL N ++ S+ + LPRF +E + + Sbjct: 187 MNQLLFSAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNLK-LPRF-NREMPAV-----D 239 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 +LR A +GL+ +K Y++RLD EL++I +M F YFLIV D +++ + Sbjct: 240 QLRQLAQSGLD--------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRS 291 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +G GRGS AGS+ AY L IT IDP++ LLFERFLN +R SMPD DID R E Sbjct: 292 RGYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNKERYSMPDIDIDLPDIYRSE 351 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVS 488 + YV+++YG + AQI+TF + AK A+RDV + ++ +L K I D V Sbjct: 352 FLHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDTLTTVY 411 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + ++ FR+ R EI++ +EG R S HAAGIV+ D L+ +P+ Sbjct: 412 EKNMS----FRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--K 465 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D+ VTQ++ +E GL+K DFLGL+ LT +QK + L + +G+ +D+ I +D + Sbjct: 466 AGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQ 525 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L + T GIFQ E +G L+ ++P E+++A SL RPG D + RK G Sbjct: 526 TLALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYG 585 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEK+ I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK EM K Sbjct: 586 KEKVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSK 645 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 E+F+ G+ + G +A +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP F Sbjct: 646 MSEQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSALAFQLAYFKTHYPQIF 705 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846 + + + +DA + + +N P +D K+ D +I L IKG+ Sbjct: 706 YDVMLNYSSSD------YIRDAIENGFSLASLDINRIPYMD-KISDGKIVLGLKTIKGLP 758 Query: 847 TTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E + + S+EDF +R+ SK +L L+ G D F +R +++ +L Sbjct: 759 RDFALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRRKIIGNL 818 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 N+ + N+ ++FA ++ + E +S + R+ EQ +LG S Sbjct: 819 SNLFTF--------VNELGSLFAESSYSW---VEYEDYS---QTERYSIEQDLLGVGLST 864 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HPL + +KM + Y+ + + + S + +T+KG ++ +++ + Sbjct: 865 HPLH----LAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVN 920 Query: 1026 EYEANFFP 1033 + + FP Sbjct: 921 KLDVTLFP 928 >gi|228476876|ref|ZP_04061521.1| DNA polymerase III subunit alpha [Streptococcus salivarius SK126] gi|228251450|gb|EEK10595.1| DNA polymerase III subunit alpha [Streptococcus salivarius SK126] Length = 1036 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 313/1028 (30%), Positives = 519/1028 (50%), Gaps = 106/1028 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L S YS ++ + LN+ + + A+ + D +NL++A F+Q A G++P+ Sbjct: 2 FAQLDTKSVYSFMDSVVDLNSYVARAKELGYQALGLMDRDNLYAAYHFAQLASRNGLRPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG M+ NL + K PF LL +GY+ L++L + L G++ Sbjct: 62 IG------MEANLFYEGR-KIPFR------LLAKNNQGYKNLMKLATE---LSSGQREFT 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 +L +I ++L P G +++ + R Sbjct: 106 AFSDYLNDIA----LILPSEDWEP--------------------GMTLGSEVFIGV---R 138 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D +E + P+V + + D +L A++ + +S+ + P Sbjct: 139 PEDAGKE---------FDYPVVPLHTVRYFENSDRSTIQMLHAISQNVSLSEAS---ICP 186 Query: 251 -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + L + E+ S +SD+PEAL N ++ ++ LPRF ++ + + Sbjct: 187 MNQLLFSPQEIESAYSDIPEALNNLEQLVSDITYQFDTDLK-LPRF-NRDMPAV-----D 239 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 +LR A +GLE +K + Y++RLD EL++I +M F YFLIV D +++ + Sbjct: 240 QLRQLAQSGLE--------SKKLTSPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRS 291 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +G GRGS AGS+ AY L IT IDP++ LLFERFLN +R SMPD DID R E Sbjct: 292 RGYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSE 351 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 + YV+++YG + AQI+TF + AK A+RDV + ++ +L K I + +L Sbjct: 352 FLHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKI----SFRDNL 407 Query: 490 QAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 ++ + + FR+ R EI++ +EG R S HAAGIV+ D L+ +P+ Sbjct: 408 TSVYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--K 465 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D+ VTQ++ +E GL+K DFLGL+ LT +QK + L + +G+ +D+ I +D + Sbjct: 466 AGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGITIDIKSIDLEDPQ 525 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L + T GIFQ E +G L+ ++P E+++A SL RPG D + RK G Sbjct: 526 TLALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFIARKYG 585 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEK+ I P++ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK EM K Sbjct: 586 KEKVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKDANEMSK 645 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 E+F+ G+ + G IA +F ++AKFA YGFN+SHA AY+ +++Q A+ KTHYP F Sbjct: 646 MSEQFMEGSRQLGRDPQIAERLFSMMAKFAGYGFNRSHAYAYSALAFQLAYFKTHYPQIF 705 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846 + + + +DA + + +N P +D K+ D +I L IKG+ Sbjct: 706 YDVMLNYSSSD------YIKDAIENGFSLARLDINRIPYLD-KISDGKIVLGLKTIKGLP 758 Query: 847 TTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + I+E + + S+EDF +R+ SK +L L+ G D F +R +++ +L Sbjct: 759 RDFSLWIIEDRKQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDIFEPNRQKIIGNL 818 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 +N+ + N+ ++FA ++ D E +S + R+ EQ +LG S Sbjct: 819 NNLFTF--------VNELGSLFAESSYSWVD---YEDYS---QTDRYNLEQELLGVGLSP 864 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HPL + +KM + Y+ + + S + +T+KG ++ ++ ++ Sbjct: 865 HPLH----LAQKMASRPYQPISDLTVNTKATVLVQLESVRIIRTKKGDQMAFLNVTDGIN 920 Query: 1026 EYEANFFP 1033 + + FP Sbjct: 921 KLDVTLFP 928 >gi|269124207|ref|YP_003306784.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM 12112] gi|268315533|gb|ACZ01907.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM 12112] Length = 1056 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 285/927 (30%), Positives = 501/927 (54%), Gaps = 87/927 (9%) Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74 ++H+ YSLLEG S+ + K + +AITD +F+A++F + I PIIG + Sbjct: 4 RIHTEYSLLEGVGSVEEYVQKARENNIKELAITDFG-MFAAIKFYNSCKSNNIVPIIGIE 62 Query: 75 LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134 + + +G + ++ LL +G + + +L + + + I L Sbjct: 63 IHL----------KGFLDQENIYTLTLLAKNEKGVKNIYKLSTISH------ERNFILLD 106 Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194 L E G + + +L+GG + + N + +K + + L + + Y R Sbjct: 107 DLLEHGKD-IYILSGGVNSELVSYVLKNDYKKVKKLMEIMLEKLDIILEIPMFEMLEYQR 165 Query: 195 YRESQVVQLAYTHELPL--VATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251 ++V EL + + N +L +ED + A+ + T+ + ++ + Sbjct: 166 LMFDKLVD-----ELNVKSIEVNEIYYLEKEDKILQKIFAAIKENRTLKTVQNEKKQDGL 220 Query: 252 HYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 H++ N+ + I +D+ L+N V P++ K D + ++E Sbjct: 221 HFIINNQDKREDILNDIDIVLDNK-----------NVEFPLV-----KLPDGLSEKE--- 261 Query: 311 LRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + + + I K Y ++ + R+++ELNVI +M + YFLIV DFI++AK Sbjct: 262 --------YIINILEKNIGKKYPNITKEIQDRINYELNVIDKMGYIKYFLIVHDFIKYAK 313 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I +GPGRGS AGS+ +Y L IT++DP+++ L+FERFLNP+R+SMPD D+D Q++R Sbjct: 314 ENDIFIGPGRGSAAGSIISYLLGITELDPIKYGLIFERFLNPERISMPDIDVDIEQEKRI 373 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 ++I Y++ YG V+QIITF + + AL+D+ R ++P + +L D + S Sbjct: 374 DLIEYIKRTYGSRNVSQIITFSTFKPTLALKDLARVFEIPEKSIRKLL-----DESKEKS 428 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 L ++D V L++ ++++EG +++STHAAG++I + + +P+ D Sbjct: 429 LDELSDSKEM---------VKSLIDYAKRIEGKIKNSSTHAAGVIITKEDMRENLPLIYD 479 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 + QF +E G +K D LGLK L +++ + + + +D+ +P + E Sbjct: 480 SYTKDYQIQFEANVLESLGYLKMDLLGLKNLNVVK---NVIKKVNEDIDIYNLP-EYEEA 535 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-----NIVVYNN 663 ++LL T T+GIFQ ES G+ Q ++ +EDI L++LYRPGP++ +++V N Sbjct: 536 FNLLNTGNTIGIFQCESRGITQLAMNLKIHSLEDIALLLALYRPGPLESGLIPSLIVMKN 595 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 KN KI ++ P+I+ +L T GV++YQEQVM+IAQ +SGYSL++AD LR+A+GKK E Sbjct: 596 NKNI--KIKTVDPMIEDILLPTYGVLVYQEQVMEIAQKISGYSLAKADELRKAIGKKNVE 653 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + + ++ FI A I K A I++L+ F +YGFNK+HA +YA I+YQTA++K Y Sbjct: 654 LLKQNRKDFIENAI---IPKQRAEKIYDLIDNFGNYGFNKAHAISYANITYQTAYLKAKY 710 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P EF A+ +T E+ +K+ + + NI++ PPS+N +F++ +N I L+A+K Sbjct: 711 PREFFASLLTTELKVEKKLVNSYAEMLKRNIEMYPPSINRSTAEFEIEENGIRIPLSALK 770 Query: 844 GVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 + TAR ++E + F + DF +R + LN+ LE L+++G D F R +L+ Sbjct: 771 EMSEKTAREVVEEREKNGNFKDIFDFITR--CRFLNKSNLEGLIYSGCFDEFNIGRKKLI 828 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAH 929 +L +I K+ K++T+ + ++F + Sbjct: 829 VNLQDIIKWIDKRNKSQTDIYSSLFLN 855 >gi|71893932|ref|YP_279378.1| DNA polymerase III DnaE [Mycoplasma hyopneumoniae J] gi|71852059|gb|AAZ44667.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J] Length = 981 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 247/643 (38%), Positives = 376/643 (58%), Gaps = 29/643 (4%) Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 ++ RL +E I ++KF+ YFLI+ DF++WA+KN I +GPGRGS +GS+ AY L IT ++ Sbjct: 258 WKARLQYEYETICKLKFTNYFLIIWDFLKWARKNEILIGPGRGSASGSLVAYLLEITSVN 317 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 PL++ L+FERFLNP R++MPD DID RR EVI Y+ KYG + A IITF +L AK+ Sbjct: 318 PLKYDLIFERFLNPQRITMPDIDIDIQDTRRQEVIDYLFEKYGPDHCATIITFSTLAAKS 377 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD--DSRFR---------EARLAD 505 RD+ + +P Q+++ KLIPN+ +L + D S FR +A Sbjct: 378 VFRDISKTFGIPEIQINKNAKLIPNN----ANLSQLYDQKSSEFRRLIEKGDNFKAENNS 433 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 ++ +IS LEG+ R +STHAAGIV+ P+++LVP++ + + +L Q+ ++IE Sbjct: 434 EIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKLVPVH-NSKENLNQIQYAAEFIED 492 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 L+K D LGLK LT++ L + G K+ + +P ++ T +LL+ T GIFQLES Sbjct: 493 FSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQLPISENSTNNLLSQGKTSGIFQLES 552 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY--NNRKNGKEKIVSIHPLIDPMLK 683 GM +++ + I DIIA++SL+RPGPI I Y N +N EKI P D +++ Sbjct: 553 PGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYAKNKERNNWEKIF---PEYDKIVE 609 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK + ++DK KE FI + G Sbjct: 610 STFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDETKLDKIKENFIKNGTNLGYEP 669 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K YP F ++ E KIK Sbjct: 670 KLVEDIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAKYPAYFFVELISNENGAQAKIK 729 Query: 804 KFCQDARQFNIQIMPPSVN--TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADK 860 K+ +AR F +I P++N T F G N I+ L +KG+GT + I+ E S + Sbjct: 730 KYVGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLPLLMVKGLGTIAIKTIIDERSKNG 789 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + + DF R+ ++ +E L+FA L FG ++ L + + + +A +V Sbjct: 790 IYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQETLAHNFELLWNHASFV---LN 845 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +K N+ D LEK N +ENE + LG F Sbjct: 846 DKDGNLVLTTDNFGLDLEFLEKIPY-NQEKNYENEVKYLGMSF 887 >gi|225850456|ref|YP_002730690.1| DNA polymerase III subunit alpha [Persephonella marina EX-H1] gi|225645313|gb|ACO03499.1| DNA polymerase III subunit alpha [Persephonella marina EX-H1] Length = 1574 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 267/718 (37%), Positives = 412/718 (57%), Gaps = 39/718 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL +H+ YSLL+GA+ + + K A+ +TD N+F A++F Q+ GI Sbjct: 2 SGDFVHLHLHTHYSLLDGAIKIPELAQKAVEYGYKAVGMTDHGNIFGAVQFYQEMKKVGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS----IVLLVSTAEGYQRLIELVSRMYLLD 123 +PIIG + + +GK + ++L G++ L++L S Y Sbjct: 62 KPIIGMEAYFTSN---RFEKKGKGSEDILSDKNYHLILHAKDKTGFKNLMKLSSLAYT-- 116 Query: 124 QGKQSVRICLSW-LQEIGTEGLIMLTGGSSGPIDRAFF---FNSSQVAEKRLLTFKKLFG 179 +G + + W L E EGLI T G I F+ + KRL K +FG Sbjct: 117 EG-FYYKPRIDWELLERYHEGLICQTACLKGFIPHLLSQGKFDEAYQQAKRL---KDIFG 172 Query: 180 DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D LY +Q + ++ ++ +++LA + +VATN+S +L+ ED +AHDV+ A+ Sbjct: 173 DDLYFEIQINGLPEQEVANKGIIELARKLGVKIVATNDSHYLNPEDQKAHDVIKALQMKK 232 Query: 239 VVSQKDRP----RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV---HAPI 291 V++ + +VT H+ K EM F EAL NTVEIA +C+ ++ + Sbjct: 233 TVAELKKEGKVFQVTGLHFTKP-EEMYRKFKGYEEALRNTVEIAEKCNVEIETADTRGYL 291 Query: 292 LPRF----IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 P++ +++E + +K E E + GLE RL++ ++YR+RL +E++V Sbjct: 292 FPKYQIPGLDREATEEEKVEYFE--KLSWEGLERRLSEKKDLPKSKIEEYRERLRYEIDV 349 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M F YFLIV DFI +AKKN IPVGP RGS AGS+ AY L ITD+DPL+ L+FERF Sbjct: 350 IKQMGFPEYFLIVQDFINYAKKNGIPVGPARGSAAGSLVAYTLGITDVDPLQHGLIFERF 409 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNPDR+SMPD D+DFC + R +VI YV+ KYG + VAQIIT+ +++K +RDV RAL Sbjct: 410 LNPDRISMPDIDVDFCMENRGKVIEYVKEKYGEQSVAQIITYNFMKSKMVIRDVARALGF 469 Query: 468 PYSQVDRLCKLIPNDPAHPVSL---QAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 YS+ DR+ K+I P +L + + + FR+ D V L+++++KLEGL RH Sbjct: 470 SYSEADRIAKMILPGPVQGSTLTIDENLEANPEFRKLYETDEKVRELIDLARKLEGLARH 529 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HAAG+VI PL + VP+Y D + TQF+M +E GL+K DFLGLKTLT L Sbjct: 530 TGIHAAGVVIAPGPLDEFVPVYVD-KDGTKATQFDMNTLETLGLVKMDFLGLKTLTELNY 588 Query: 585 SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 + + +R G+ ++ +P DD Y LL + T G+FQLES GM+ L ++PD ++I Sbjct: 589 MKNLIKERHGIDINFHKLPIDDQNVYRLLQSGKTTGVFQLESKGMQDLLVRLKPDKFDEI 648 Query: 644 IALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 IA+++L+RPGP+ + +V + +RK+G++ + + +L+ET G+ + + ++ +A Sbjct: 649 IAILALFRPGPLMSGMVDDFIDRKHGRKPVEYPFEEVKEILEETYGLCLTGDTLITMA 706 Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/337 (38%), Positives = 196/337 (58%), Gaps = 13/337 (3%) Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 IYQEQ+M +A +LSG++++EAD LR+A+GKK + M K K+RFISGA + G K + Sbjct: 1106 IYQEQIMFMANILSGFTMAEADTLRKAIGKKKADVMAKMKDRFISGAVERGFDKVKIEKL 1165 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++ + KFA Y FNKSH+ AYA ++Y TA++KT+YP EF A +++E +N K D Sbjct: 1166 WDDIEKFASYSFNKSHSTAYAYLTYWTAYIKTYYPEEFFAVKLSIE-NNDNKFLNLLLDM 1224 Query: 810 RQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLED 867 F I+++PP +N +F + D +I + L+ IK VG +A+ I+E + + + D Sbjct: 1225 EDFGIKLLPPDINRSRSNFSIEDKGKIRFGLSRIKNVGEQSAKLIVEERERNGDYKDIFD 1284 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 R+DSK LN+RVLE+L+ AGA D G R +L S+D Q + + + ++F Sbjct: 1285 IAERMDSKALNKRVLEALIKAGAFDFSGVDRGVMLASVDRALSAGQKAREKKASGQNSLF 1344 Query: 928 AH----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 E G E S E + FE E VLGFY SGHPL+ YK L+ IK Sbjct: 1345 GLMPQIEDGNGFAYENAEPIS-EKEKLNFEKE--VLGFYISGHPLNAYKKELQGYVIKI- 1400 Query: 984 EESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 S+A + G+ +R+A ++ ++KKTR GS + +T Sbjct: 1401 -NSLAERKTGDKVRIAGVISDIKKKKTRSGSTMAILT 1436 >gi|22537100|ref|NP_687951.1| DNA polymerase III DnaE [Streptococcus agalactiae 2603V/R] gi|25010983|ref|NP_735378.1| DNA polymerase III DnaE [Streptococcus agalactiae NEM316] gi|76788136|ref|YP_329656.1| DNA polymerase III DnaE [Streptococcus agalactiae A909] gi|77406846|ref|ZP_00783875.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae H36B] gi|77411007|ref|ZP_00787362.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae CJB111] gi|77413238|ref|ZP_00789435.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 515] gi|22533960|gb|AAM99823.1|AE014234_13 DNA polymerase III, alpha subunit [Streptococcus agalactiae 2603V/R] gi|23095383|emb|CAD46588.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae NEM316] gi|76563193|gb|ABA45777.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae A909] gi|77160698|gb|EAO71812.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 515] gi|77162931|gb|EAO73887.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae CJB111] gi|77174540|gb|EAO77380.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae H36B] Length = 1034 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 313/965 (32%), Positives = 487/965 (50%), Gaps = 109/965 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + L + K + I I D +NL++A F Q+A A ++PI Sbjct: 2 FAQLDTRTVYSFMDSLVDLKTYVSKSKSLGYQTIGILDHSNLYAAYHFIQEAQKANLRPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G DI +++ ++ + ++T GY+ L++L + + S + Sbjct: 62 VGFSFDIVVENR------------SIEVYCIAINTV-GYKNLLKLST-------AQMSEK 101 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L+ L E EG+ ++ V ++ L F + G VNL Sbjct: 102 MSLNLLTE-HLEGVQLI-------------LPYQDVLDQLNLPFDYVIG----VNLTSP- 142 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 Q+ YT P++A + + + D E +L A+ + ++ KD + Sbjct: 143 -----------QIPYTK--PIIAIDTVRYFQKNDIETLQMLHAIRDNVLL--KDAQYASK 187 Query: 251 DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQ--VHAPILPRFIEKECDDIQKEE 307 + LK EM F + PEAL N + ++ PI R I Sbjct: 188 NQELKPCQEMTLAFKERFPEALANLESLVENVAYHFDSDFKLPIFNREIP---------- 237 Query: 308 ENELRNKAVAGLEVR-LAQGAI-AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 AG E+R L Q + +KG + Y++RL+ EL +I +M F YFLIV D ++ Sbjct: 238 ---------AGEELRTLTQNNLKSKGLWSDAYQERLEKELTIIHKMGFDDYFLIVWDLLR 288 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 + + +G GRGS AGS+ +YAL IT IDP++ +L+FERFLN +R SMPD DID Sbjct: 289 FGRSKGYYMGMGRGSAAGSLVSYALNITGIDPVKHNLIFERFLNEERYSMPDIDIDLPDI 348 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPA 484 R E +RYV+N+YG AQI+TF + AK A+RDV + ++ + K I D Sbjct: 349 YRGEFLRYVRNRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGASEYELTNITKKIHFRDNL 408 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 V + +A FR+ + + +I++++EG R S HAAG+V+ D L+ +P Sbjct: 409 TSVYNRNLA----FRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIP 464 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + D+ +TQ++ +E GL+K DFLGL+ LT +QK + + + G+ + L I Sbjct: 465 LKNG--EDMMITQYDASSVEDNGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLETIDL 522 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D ET L T GIFQ E SG L ++P+C ED++A SL RPG D + N Sbjct: 523 EDKETLKLFAAGQTKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFIN 582 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+ GKEKI + P+I P+L+ T G+++YQEQVMQIAQ +G++L ++D+LRRAM KK + Sbjct: 583 RRFGKEKIDLVDPVIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSK 642 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM K + F+ GA G + A IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY Sbjct: 643 EMQKMSQSFLEGAVSKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHY 702 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 F + + N + + DA F I PS+NT ++ +IY L IK Sbjct: 703 SDVFY--DIMINYSNSD----YLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIK 756 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GV A I S ++PF S+EDF R+ + + L+ GA D F +R ++ Sbjct: 757 GVPNDLAYWI---SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITS 813 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +LD++ + N+ ++FA T + +E FS +S ++E EQ +LG Sbjct: 814 NLDSLFTFV--------NELGSLFA---DTSYHWLEVEDFS---NSEKYEMEQDILGVGI 859 Query: 964 SGHPL 968 S HPL Sbjct: 860 SPHPL 864 >gi|312278519|gb|ADQ63176.1| DNA polymeraDNA polymerase III alphase III alpha subunit [Streptococcus thermophilus ND03] Length = 1036 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 312/1028 (30%), Positives = 511/1028 (49%), Gaps = 106/1028 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L S YS ++ + LN + + +I + D +NL++A F+Q A G++P+ Sbjct: 2 FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + ++ + K PF LL +GY+ L++L + L G++ Sbjct: 62 IGTEANLFYEGR-------KIPFR------LLAKNNQGYKNLMKLATE---LSSGQREFT 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 +L +I ++L P G +++ + R Sbjct: 106 YFSDYLNDIA----LILPSEDWEP--------------------GMSLGSEVFIGV---R 138 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D +E + P+V + + D L A++ + +S+ + P Sbjct: 139 PEDAGKE---------FDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVS---ICP 186 Query: 251 -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + L + EM +S LPEAL N ++ S+ + LPRF +E + + Sbjct: 187 MNQLLFSAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNLK-LPRF-NREMPAV-----D 239 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 +LR A +GL+ +K Y++RLD EL++I +M F YFLIV D +++ + Sbjct: 240 QLRQLAQSGLD--------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRS 291 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +G GRGS AGS+ AY L IT IDP++ LLFERFLN +R SMPD DID R E Sbjct: 292 RGYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRGE 351 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVS 488 + YV+++YG + AQI+TF + AK A+RDV + ++ +L K I D V Sbjct: 352 FLHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDTLTTVY 411 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + ++ FR+ R EI++ +EG R S HAAGIV+ D L+ +P+ Sbjct: 412 EKNMS----FRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--K 465 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D+ VTQ++ +E GL+K DFLGL+ LT +QK + L + +G+ +D+ I +D + Sbjct: 466 AGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQ 525 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L + T GIFQ E +G L+ ++P E+++A SL RPG D + RK G Sbjct: 526 TLALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYG 585 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEK+ I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK EM K Sbjct: 586 KEKVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSK 645 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 E+F+ G+ + G +A +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP F Sbjct: 646 MSEQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSALAFQLAYFKTHYPQIF 705 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846 + + + +DA + + +N P +D K+ D +I L IKG+ Sbjct: 706 YDVMLNYSSSD------YIRDAIENGFSLASLDINRIPYMD-KISDGKIVLGLKTIKGLP 758 Query: 847 TTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E + + S+EDF +R+ SK +L L+ G D F +R +++ +L Sbjct: 759 RDFALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRRKIIGNL 818 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 N+ + N+ ++FA ++ + E +S + R+ EQ +LG S Sbjct: 819 SNLFTF--------VNELGSLFAESSYSW---VEYEDYS---QTERYSIEQDLLGIGLST 864 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HPL + +KM + Y+ + + + S + +T+KG ++ +++ + Sbjct: 865 HPLH----LAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVN 920 Query: 1026 EYEANFFP 1033 + + FP Sbjct: 921 KLDVTLFP 928 >gi|312601529|gb|ADQ90784.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 168] Length = 981 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 247/643 (38%), Positives = 375/643 (58%), Gaps = 29/643 (4%) Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 ++ RL +E I ++KF+ YFLI+ DF++WA+KN I +GPGRGS +GS+ AY L IT ++ Sbjct: 258 WKARLQYEYETICKLKFTNYFLIIWDFLKWARKNEILIGPGRGSASGSLVAYLLEITSVN 317 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 PL++ L+FERFLNP R++MPD DID RR EVI Y+ KYG + A IITF +L AK+ Sbjct: 318 PLKYDLIFERFLNPQRITMPDIDIDIQDTRRQEVIDYLFEKYGPDHCATIITFSTLAAKS 377 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD--DSRFR---------EARLAD 505 RD+ + +P Q+++ KLIPN+ +L + D S FR +A Sbjct: 378 VFRDISKTFGIPEIQINKNAKLIPNN----ANLSQLYDQKSSEFRRLIEKGDNFKAENNS 433 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 ++ +IS LEG+ R +STHAAGIV+ P+++LVP++ + + +L Q+ ++IE Sbjct: 434 EIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKLVPVH-NSKENLNQIQYAAEFIED 492 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 L+K D LGLK LT++ L + G K+ + +P + T +LL+ T GIFQLES Sbjct: 493 FSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQLPISEDSTNNLLSQGKTSGIFQLES 552 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY--NNRKNGKEKIVSIHPLIDPMLK 683 GM +++ + I DIIA++SL+RPGPI I Y N +N EKI P D +++ Sbjct: 553 PGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYAKNKERNNWEKIF---PEYDKIVE 609 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK + ++DK KE FI + G Sbjct: 610 STFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDETKLDKIKENFIKNGTNLGYEP 669 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K YP F ++ E KIK Sbjct: 670 KLVEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAKYPAYFFVELISNENGAQAKIK 729 Query: 804 KFCQDARQFNIQIMPPSVN--TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADK 860 K+ +AR F +I P++N T F G N I+ L +KG+GT + I+ E S + Sbjct: 730 KYVGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLPLLMVKGLGTIAIKTIIDERSKNG 789 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + + DF R+ ++ +E L+FA L FG ++ L + + + +A +V Sbjct: 790 IYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQETLAHNFELLWNHASFV---LN 845 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +K N+ D LEK N +ENE + LG F Sbjct: 846 DKDGNLVLTTDNFGLDLEFLEKIPY-NQEKNYENEVKYLGMSF 887 >gi|72080910|ref|YP_287968.1| DNA polymerase III DnaE [Mycoplasma hyopneumoniae 7448] Length = 989 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 246/641 (38%), Positives = 374/641 (58%), Gaps = 25/641 (3%) Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 ++ RL +E I ++KF+ YFLI+ DF++WA+KN I +GPGRGS +GS+ AY L IT ++ Sbjct: 266 WKARLQYEYETICKLKFTNYFLIIWDFLKWARKNEILIGPGRGSASGSLVAYLLEITSVN 325 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 PL++ L+FERFLNP R++MPD DID RR EVI Y+ KYG + A IITF +L AK+ Sbjct: 326 PLKYGLIFERFLNPQRITMPDIDIDIQDTRRQEVIDYLFEKYGPDHCATIITFSTLAAKS 385 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR---------EARLADPS 507 RD+ + +P Q+++ KLIPN+ +S S FR +A Sbjct: 386 VFRDISKIFGIPEIQINKNAKLIPNNAN--LSQLYNQKSSEFRRLIEKGDNFKAENNSEI 443 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 ++ +IS LEG+ R +STHAAGIV+ P+++LVP++ + + +L Q+ ++IE Sbjct: 444 YKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKLVPVH-NSKENLNQIQYAAEFIEDFS 502 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 L+K D LGLK LT++ L + G K+ + +P ++ T +LL+ T GIFQLES G Sbjct: 503 LLKIDLLGLKNLTIVANILAKINSDGHKITFNQLPISENSTNNLLSQGKTSGIFQLESPG 562 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY--NNRKNGKEKIVSIHPLIDPMLKET 685 M +++ + I DIIA++SL+RPGPI I Y N +N EKI P D +++ T Sbjct: 563 MTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYAKNKERNNWEKIF---PEYDKIVEST 619 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK + ++DK KE FI + G + Sbjct: 620 FGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDETKLDKIKENFIKNGTNLGYEPKL 679 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K YP F ++ E KIKK+ Sbjct: 680 VEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAKYPAYFFVELISNENGAQAKIKKY 739 Query: 806 CQDARQFNIQIMPPSVN--TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPF 862 +AR F +I P++N T F G N I+ L +KG+GT + I+ E S + + Sbjct: 740 VGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLPLLMVKGLGTIAIKTIIDERSKNGIY 799 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 + DF R+ ++ +E L+FA L FG ++ L + + + +A +V +K Sbjct: 800 KNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQETLAHNFELLWNHASFV---LNDK 855 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 N+ D LEK N +ENE + LG F Sbjct: 856 DGNLVLTTDNFGLDLEFLEKIPY-NQEKNYENEVKYLGMSF 895 Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust. Identities = 17/74 (22%), Positives = 38/74 (51%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 L K+ ++L + Y+ L + L++++ + + ITD N++F +F + Sbjct: 5 LTKNMQLINLHTRTEYTFLSSTIKLDSLIKFALENNLKTLVITDLNSMFGVPKFYKLCKQ 64 Query: 65 AGIQPIIGCQLDID 78 I P+IG +++I+ Sbjct: 65 NKINPVIGLEIEIE 78 >gi|116627933|ref|YP_820552.1| DNA polymerase III DnaE [Streptococcus thermophilus LMD-9] gi|116101210|gb|ABJ66356.1| DNA polymerase III catalytic subunit, DnaE type [Streptococcus thermophilus LMD-9] Length = 1036 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 312/1028 (30%), Positives = 511/1028 (49%), Gaps = 106/1028 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L S YS ++ + LN + + +I + D +NL++A F+Q A G++P+ Sbjct: 2 FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + ++ + K PF LL +GY+ L++L + L G++ Sbjct: 62 IGTEANLFYEGR-------KIPFR------LLAKNNQGYKNLMKLATE---LSSGQREFT 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 +L +I ++L P G +++ + R Sbjct: 106 YFSDYLNDIA----LILPSEDWEP--------------------GMSLGSEVFIGV---R 138 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D +E + P+V + + D L A++ + +S+ + P Sbjct: 139 PEDAGKE---------FDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVS---ICP 186 Query: 251 -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + L + EM +S LPEAL N ++ S+ + LPRF +E + + Sbjct: 187 MNQLLFSAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNLK-LPRF-NREMPAV-----D 239 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 +LR A +GL+ +K Y++RLD EL++I +M F YFLIV D +++ + Sbjct: 240 QLRQLAQSGLD--------SKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRS 291 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +G GRGS AGS+ AY L IT IDP++ LLFERFLN +R SMPD DID R E Sbjct: 292 RGYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSE 351 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPAHPVS 488 + YV+++YG + AQI+TF + AK A+RDV + ++ +L K I D V Sbjct: 352 FLHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDTLTTVY 411 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + ++ FR+ R EI++ +EG R S HAAGIV+ D L+ +P+ Sbjct: 412 EKNMS----FRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--K 465 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D+ VTQ++ +E GL+K DFLGL+ LT +QK + L + +G+ +D+ I +D + Sbjct: 466 AGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQ 525 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L + T GIFQ E +G L+ ++P E+++A SL RPG D + RK G Sbjct: 526 TLALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYG 585 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEK+ I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK EM K Sbjct: 586 KEKVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSK 645 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 E+F+ G+ + G +A +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP F Sbjct: 646 MSEQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSSLAFQLAYFKTHYPQIF 705 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVG 846 + + + +DA + + +N P +D K+ D +I L IKG+ Sbjct: 706 YDVMLNYSSSD------YIRDAIENGFSLASLDINRIPYMD-KISDGKIVLGLKTIKGLP 758 Query: 847 TTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+E + + S+EDF +R+ SK +L L+ G D F +R +++ +L Sbjct: 759 RDFALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRRKIIGNL 818 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 N+ + N+ ++FA ++ + E +S + R+ EQ +LG S Sbjct: 819 SNLFTF--------VNELGSLFAESSYSW---VEYEDYS---QTERYSIEQDLLGVGLST 864 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HPL + +KM + Y+ + + + S + +T+KG ++ +++ + Sbjct: 865 HPLH----LAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVN 920 Query: 1026 EYEANFFP 1033 + + FP Sbjct: 921 KLDVTLFP 928 >gi|13357977|ref|NP_078251.1| DNA polymerase III DnaE [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762126|ref|YP_001752499.1| DNA polymerase III DnaE [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508625|ref|ZP_02958129.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701626|ref|ZP_02971330.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|14194693|sp|Q9PQ74|DPO3A_UREPA RecName: Full=DNA polymerase III subunit alpha gi|11356840|pir||D82895 DNA polymerase III alpha chain 2 UU415 [imported] - Ureaplasma urealyticum gi|6899403|gb|AAF30826.1|AE002138_13 DNA polymerase III alpha chain 2 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827703|gb|ACA32965.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182676084|gb|EDT87989.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700858|gb|EDU19140.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 969 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 300/894 (33%), Positives = 469/894 (52%), Gaps = 96/894 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F++L VHS YSLL LS+++++ ++QP + +TD NN++ +EF KA A + PI Sbjct: 2 FINLNVHSHYSLLNSTLSIDDLIKYALDNKQPYVCLTDLNNMYGCIEFYDKAKAHNLTPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG L+ Q T LV+ A+ Y ++L+ K S Sbjct: 62 IG----------LEFEYQNAT----------LVAYAKNYNGYLKLI---------KWSSW 92 Query: 131 ICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I S EI + LI++ + F+ + + + +F Y N Sbjct: 93 IMTSKEFEIQDDFDDLIIVCKKGTIVFKSPNFYQTHDQNAPNAIALQSVF----YAN--- 145 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + ++V LA ++A N L L ED+ K+ Sbjct: 146 -------KNDKIVFLA------MLAIKNDLKL--EDF-----------------KNCCDF 173 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH-APILPRFIEKECDDIQKEE 307 +H+L N + S FS P AL N ++ +Q+H PI +K+ I E Sbjct: 174 DNNHFL-NDNLAQSFFS--PIALNNLNKVLNELK--VQIHDLPINIPVYDKQNSIISSEI 228 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ ++GL+ RL G + Y QRL +EL+VI +F YFLIV DFI +A Sbjct: 229 ---LKQLCISGLKKRLNAN---DGQVNKIYVQRLKYELDVINEKQFDDYFLIVYDFINFA 282 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D ++R Sbjct: 283 KSNGIIVGPGRGSAAGSLVAYCLHITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKR 342 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI Y+ KYG++ VA I+TF L+AK A+RDVGR L + +D++CK I + + Sbjct: 343 DLVIEYLFEKYGNDHVAYILTFQRLKAKMAIRDVGRILGIDLKVIDKICKNIKPEYDEDL 402 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L AI ++ +E L L EIS+KL R THAAGI++ D +S ++P+ Sbjct: 403 DL-AIKKNTILKEMYLLHK---ELFEISKKLINAPRQIGTHAAGIILSDSLISNIIPIQL 458 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + +D P++Q++M+++E+ GLIK D LGLK LT++ L + + + K+DL I ++D Sbjct: 459 GI-NDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYENQNKKIDLFNINYNDK 517 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + L T GIFQLES GM++ L ++P IEDI + +L+RPGP NI + R+ Sbjct: 518 FVFEDLAKARTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRF 577 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +E+ + +L+ T G+I+YQEQV+++ + ++ + ++ +D RRA+ KK ++ + Sbjct: 578 KREEFSYWNEATRKILEPTYGIIVYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILI 637 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 + K+ FI+GA N + + IFE + FA YGFN SH+ AY+ ISY A++K +Y +E Sbjct: 638 QLKDDFINGALNNNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYTLE 697 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKG 844 FL+ ++ + +K+ + +A++FNI I P + DF + + I + IKG Sbjct: 698 FLSVLLSHTSASKDKLLSYLNEAKEFNISIKGPDIQYFSNDFVIDTQKQIIRFGFKTIKG 757 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALDCFG 895 G + I A +L D+ S +D+ K ++ + +E L+ G D FG Sbjct: 758 FGDELLKKIKSALQKS---TLSDYISYIDALKKGNVSLKNIEILIRVGTFDSFG 808 >gi|144575533|gb|AAZ53945.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448] Length = 981 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 246/641 (38%), Positives = 374/641 (58%), Gaps = 25/641 (3%) Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 ++ RL +E I ++KF+ YFLI+ DF++WA+KN I +GPGRGS +GS+ AY L IT ++ Sbjct: 258 WKARLQYEYETICKLKFTNYFLIIWDFLKWARKNEILIGPGRGSASGSLVAYLLEITSVN 317 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 PL++ L+FERFLNP R++MPD DID RR EVI Y+ KYG + A IITF +L AK+ Sbjct: 318 PLKYGLIFERFLNPQRITMPDIDIDIQDTRRQEVIDYLFEKYGPDHCATIITFSTLAAKS 377 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR---------EARLADPS 507 RD+ + +P Q+++ KLIPN+ +S S FR +A Sbjct: 378 VFRDISKIFGIPEIQINKNAKLIPNNAN--LSQLYNQKSSEFRRLIEKGDNFKAENNSEI 435 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 ++ +IS LEG+ R +STHAAGIV+ P+++LVP++ + + +L Q+ ++IE Sbjct: 436 YKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKLVPVH-NSKENLNQIQYAAEFIEDFS 494 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 L+K D LGLK LT++ L + G K+ + +P ++ T +LL+ T GIFQLES G Sbjct: 495 LLKIDLLGLKNLTIVANILAKINSDGHKITFNQLPISENSTNNLLSQGKTSGIFQLESPG 554 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY--NNRKNGKEKIVSIHPLIDPMLKET 685 M +++ + I DIIA++SL+RPGPI I Y N +N EKI P D +++ T Sbjct: 555 MTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYAKNKERNNWEKIF---PEYDKIVEST 611 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK + ++DK KE FI + G + Sbjct: 612 FGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDETKLDKIKENFIKNGTNLGYEPKL 671 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K YP F ++ E KIKK+ Sbjct: 672 VEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAKYPAYFFVELISNENGAQAKIKKY 731 Query: 806 CQDARQFNIQIMPPSVN--TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPF 862 +AR F +I P++N T F G N I+ L +KG+GT + I+ E S + + Sbjct: 732 VGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLPLLMVKGLGTIAIKTIIDERSKNGIY 791 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 + DF R+ ++ +E L+FA L FG ++ L + + + +A +V +K Sbjct: 792 KNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQETLAHNFELLWNHASFV---LNDK 847 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 N+ D LEK N +ENE + LG F Sbjct: 848 DGNLVLTTDNFGLDLEFLEKIPY-NQEKNYENEVKYLGMSF 887 >gi|171920472|ref|ZP_02931773.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902930|gb|EDT49219.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 969 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 299/894 (33%), Positives = 468/894 (52%), Gaps = 96/894 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F++L VHS YSLL LS+++++ ++QP + +TD NN++ +EF KA A + PI Sbjct: 2 FINLNVHSHYSLLNSTLSIDDLIKYALDNKQPYVCLTDLNNMYGCIEFYDKAKAHNLTPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + Q T LV+ A+ Y ++L+ K S Sbjct: 62 IGLEFEY----------QNAT----------LVAYAKNYNGYLKLI---------KWSSW 92 Query: 131 ICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I S EI E LI++ + F+ + + + +F Y N Sbjct: 93 IMTSKEFEIQDDFEDLIIVCKKGDIVFKNSNFYQTHDQNAPNAIALQSVF----YAN--- 145 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + ++V LA ++A N L L ED+ K+ Sbjct: 146 -------KSDKIVFLA------MLAIKNDLKL--EDF-----------------KNCCDF 173 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH-APILPRFIEKECDDIQKEE 307 +H+L + S FS P AL N ++ +Q+H PI +K+ I E Sbjct: 174 DNNHFLTDYLAQ-SFFS--PIALNNLNKVLNELK--VQIHDLPINIPVYDKQNSIISSEI 228 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ ++GL+ RL G + Y QRL +EL+VI +F YFLIV DFI +A Sbjct: 229 ---LKQLCISGLKKRLNA---HDGQVNKIYVQRLKYELDVINEKQFDDYFLIVYDFINFA 282 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D ++R Sbjct: 283 KSNGIIVGPGRGSAAGSLVAYCLHITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKR 342 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI Y+ KYG++ VA I+TF L+AK A+RDVGR L + +D++CK I + + Sbjct: 343 DLVIEYLFEKYGNDHVAYILTFQRLKAKMAIRDVGRILGIDLKVIDKICKNIKPEYDEDL 402 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L AI ++ +E L L EIS+KL R THAAGI++ D +S ++P+ Sbjct: 403 DL-AIKKNTILKEMYLLHK---ELFEISKKLINAPRQIGTHAAGIILSDSLISNIIPIQL 458 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + +D P++Q++M+++E+ GLIK D LGLK LT++ L + + + K+DL I ++D Sbjct: 459 GI-NDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIHENQNKKIDLFNIDYNDK 517 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + L T GIFQLES GM++ L ++P IEDI + +L+RPGP NI + R+ Sbjct: 518 FVFEDLAKARTNGIFQLESPGMKKVLLKVKPHNIEDISIVSALFRPGPQQNIKTFVERRF 577 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +E+ + +L+ T G+I+YQEQV+++ + ++ + ++ +D RRA+ KK ++ + Sbjct: 578 KREEFSYWNEATRKILEPTYGIIVYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILI 637 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 + K+ FI+GA N + + IFE + FA YGFN SH+ AY+ ISY A++K +Y +E Sbjct: 638 QLKDDFINGALNNNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYTLE 697 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKG 844 FL+ ++ + +K+ + +A++FNI I P + DF + + I + IKG Sbjct: 698 FLSVLLSHTSASKDKLLSYLNEAKEFNISIKGPDIQYFSNDFVIDTQKQIIRFGFKTIKG 757 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALDCFG 895 G + I A +L D+ S +D+ K ++ + +E L+ G D FG Sbjct: 758 FGDELLKKIKSALQKS---TLSDYISYIDALKKGNVSLKNIEILIRVGTFDSFG 808 >gi|322392240|ref|ZP_08065701.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus peroris ATCC 700780] gi|321144775|gb|EFX40175.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus peroris ATCC 700780] Length = 1033 Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust. Identities = 318/1031 (30%), Positives = 514/1031 (49%), Gaps = 121/1031 (11%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 L + YS +E +S+ + ++ I D +NL+ A F ++ GIQP++G Sbjct: 4 QLDTKTVYSFMESMISIKRYVSLGKEYGYSSLGIMDEDNLYGAYYFIKECQKQGIQPLLG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 ++ + +D ++ LL + GYQ L++L + L GK+ Sbjct: 64 LEMTVHHKDEWL-------------NLRLLALSNRGYQNLMKLST---LKMTGKKEWTDF 107 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 S+L++I ++ SG D ++ + ++ D L N Sbjct: 108 SSYLEDI-----CVIVPYYSGIADLDLGYD----------YYIGVYPDTLQSNF------ 146 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD----RPRV 248 SQ + LPL N+ ED EA +L A+ + + + D + + Sbjct: 147 -----SQPI-------LPLYRVNS---FEPEDLEALQMLKAIKENVTLREVDVQSQQGLL 191 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI-LPRFIEKECDDIQKEE 307 P L+ P+ALEN + ++ S+ ++ + + LPRF + ++ Sbjct: 192 LPVERLEQ-----PFLEKFPQALENLERVTKKTSY--EIDSSLKLPRF------NPERPA 238 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ELR +A+ GL+ KG QDY+ RL+ EL+VI M F YFL+V D +++ Sbjct: 239 VEELRERAIQGLK--------QKGLWNQDYQARLEDELSVIHEMGFDDYFLVVWDLLRFG 290 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + +G GRGS GS+ AYAL IT IDP+ +L+FERFLN +R +MPD DID R Sbjct: 291 RSQGYYMGMGRGSAVGSLVAYALDITGIDPVAKNLIFERFLNRERYTMPDIDIDIPDIYR 350 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 E IRYV+++YG AQI+T+ + AK A+RDV + +P ++ + K I Sbjct: 351 PEFIRYVRDRYGSIHAAQIVTYSTFGAKQAIRDVFKRYGVPEYELTAITKKIGFKDTLTT 410 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + + FR+ + EI++K+EG R S HAAG+VI D+ L+ +P+ Sbjct: 411 AYEG---NLGFRQLIQGKIEYQKAFEIAKKIEGYPRQTSIHAAGVVISDKNLTDYIPL-- 465 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ +TQ++ +E GL+K DFLGL+ LT QK + L + +G+ + + I +D Sbjct: 466 KYGEDMLITQYDAHGVEGNGLLKMDFLGLRNLTFAQKMQELLFETQGIPLRIEDIDLEDK 525 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 ET L T GIFQ E G + L+ ++P+ ED++A SL RPG D I + RK+ Sbjct: 526 ETLALFAAGKTKGIFQFEQPGAIRLLKRVKPESFEDVVATTSLNRPGASDYIDNFVARKH 585 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKEK+ + P+++ +L T G+++YQEQVMQ+AQ +G+SL +AD+LRRAMGKK EM Sbjct: 586 GKEKVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRYAGFSLGKADILRRAMGKKNAAEMH 645 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 + +E FI GA +NG SK A +F ++ KFA YGFN+SHA AYA +++Q A+ KTHYP Sbjct: 646 RMEESFIQGALENGHSKEQAQEVFAVMEKFAGYGFNRSHAYAYAALAFQLAYFKTHYPAI 705 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F + + + DA + ++ P S+NT K+ D +Y L +IKG+ Sbjct: 706 FYQVMLNYASGD------YILDALEMGFKLTPFSINTVPYQDKLTDKTVYLGLKSIKGMS 759 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + I+E ++PF S+EDF +R+ +L LV G D F +R ++L +L Sbjct: 760 RDFSYWIIE---NRPFSSVEDFITRLPKNYQKLSLLTPLVEVGLFDGFDKNRQKILANLP 816 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + + ++ ++FA +++D E FS + +F+ EQ LG S H Sbjct: 817 TLFIF--------VDELGSLFADSSYSWTDT---EDFS---NIEKFKKEQEWLGVGISQH 862 Query: 967 PLDVYK-----PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 PL + PI+ + + + + +IR+ +T+KG + ++ S Sbjct: 863 PLLILAKNPLYPIVSLSELSEGQTATVLVEIQSIRVI---------RTKKGENMAFLKVS 913 Query: 1022 EPAKEYEANFF 1032 + E F Sbjct: 914 DSKTNLEVTVF 924 >gi|322372809|ref|ZP_08047345.1| DNA polymerase III, alpha subunit [Streptococcus sp. C150] gi|321277851|gb|EFX54920.1| DNA polymerase III, alpha subunit [Streptococcus sp. C150] Length = 1036 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 312/1027 (30%), Positives = 508/1027 (49%), Gaps = 104/1027 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L S YS ++ + L + + + A+ + D +NL++A F+Q A G++P+ Sbjct: 2 FAQLDTKSVYSFMDSVVDLPSYVKRAKELGYQALGLMDRDNLYAAYHFAQLATKNGLRPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG M+ NL +G+ + + LL +GY+ L++L + L G++ Sbjct: 62 IG------MEANL--VYEGR-----MIAFRLLAKNNQGYKNLMKLATE---LSSGQREFT 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 ++L EI ++L P F +++ + R Sbjct: 106 ALSNYLNEIA----LILPSEEWEP--------------------GMAFESDVFIGV---R 138 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D +E + P++ + + D +L A++ + +S+ + P Sbjct: 139 PEDAGKE---------FDYPVLPLHTVRYFDNVDRSTIQMLHAISQNVSLSEAS---ICP 186 Query: 251 -DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + L + EM S SD+P+AL N ++ ++ LPRF + Sbjct: 187 MNQLLFSPQEMESAHSDIPDALNNLDQLVSDITYQFDTELK-LPRFNRDML------AVD 239 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 +LR A GLE + ++ Y++RLD EL VI +M F YFLIV D +++ + Sbjct: 240 QLRQLAQDGLETKELTASV--------YQERLDKELAVIHQMGFDDYFLIVWDLLRFGRS 291 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +G GRGS AGS+ AYAL IT IDP++ LLFERFLN +R +MPD DID R E Sbjct: 292 RGYYMGMGRGSAAGSLVAYALDITGIDPVKNDLLFERFLNEERYTMPDIDIDLPDIYRSE 351 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 + YV+++YG AQI+TF + AK A+RDV + ++ +L K I + +L Sbjct: 352 FLHYVRDRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKI----SFRDNL 407 Query: 490 QAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 ++ + + FR+ P R EI++ +EG R S HAAGIV+ D L++ +P+ Sbjct: 408 TSVYEKNMSFRQLINQRPEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTEHIPL--K 465 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D+ VTQ++ +E GL+K DFLGL+ LT +QK + L + +GV +D+ I +D + Sbjct: 466 AGEDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGVVIDIKSIDLEDSQ 525 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L + T GIFQ E +G L+ ++P E+++A SL RPG D I + RK G Sbjct: 526 TLALFASGKTKGIFQFEQAGAINLLKRIKPSQFEEVVATTSLNRPGASDYIDNFIARKYG 585 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEK+ I P++ +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK EM K Sbjct: 586 KEKVDLIDPVVAHILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKDANEMSK 645 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 E F+SG+ + G + IA +F ++AKFA YGFN+SHA AY+ +++Q A+ K+HYP F Sbjct: 646 MSEAFMSGSQQLGRNPQIAERLFSMMAKFAGYGFNRSHAYAYSALAFQLAYFKSHYPQVF 705 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + + + +DA + +N K+ D +I L IKG Sbjct: 706 YDVMLNYSSSD------YIKDAIGNGFSLARLDINRIPFHDKISDGKIVLGLKTIKGFPR 759 Query: 848 TTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 A I+E + + S+EDF +R+ K VL LV G D F +R +++ +L Sbjct: 760 DFALWIIEDRKENGKYVSIEDFLTRIPKKYQKVEVLTPLVHIGLFDIFETNRQKIIGNLS 819 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 N+ + N+ ++FA ++ D + R+ EQ +LG S H Sbjct: 820 NLFTF--------VNELGSLFAESSYSWVDYDDYSQID------RYNMEQELLGVGLSPH 865 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 PL + +KM Y+ + + + S + +T+KG R+ +++ S+ + Sbjct: 866 PLH----LAQKMATHPYQPISDLTVNSKATVLVQLESVRIIRTKKGDRMAFLSVSDGINK 921 Query: 1027 YEANFFP 1033 + FP Sbjct: 922 LDVTLFP 928 >gi|50365400|ref|YP_053825.1| DNA polymerase III alpha subunit [Mesoplasma florum L1] gi|50363956|gb|AAT75941.1| DNA polymerase III alpha subunit [Mesoplasma florum L1] Length = 992 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 263/672 (39%), Positives = 385/672 (57%), Gaps = 34/672 (5%) Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 L+ K +AGL+ + ++Y QRL+ EL++I + F+ YFLIV D++ +A++N Sbjct: 238 LKQKCLAGLQHYFKN--VKHEPIKEEYIQRLNHELSIIEKTGFADYFLIVHDYVSFARRN 295 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I VGPGRGS AGS+ ++ L IT IDP+ ++LLFERFLNP+R++MPD DIDF +RRDEV Sbjct: 296 DIIVGPGRGSAAGSLVSFLLRITTIDPIEYNLLFERFLNPERITMPDIDIDFQDNRRDEV 355 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I Y+ KYG VA I+T+ ++ K+A RD R Q+ + V+ + K + +D +S Sbjct: 356 IEYLFEKYGKYNVATIVTYQTIAFKSAFRDACRIYQIDMNLVNLITKSLTDD---YLSFD 412 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 I + + + ++ +KL G R THAAGI+I D L ++P+ R Sbjct: 413 EILKTQKLIKEYSEKAEFKNIFKLVEKLIGCPRQTGTHAAGIIISDTDLRNVLPI-RQGL 471 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--IPFDDHET 608 + + TQF+M ++E GLIK D LGL+ LT L++ LD L ++ D +L I +D +T Sbjct: 472 NGIYQTQFDMNYLEDIGLIKMDLLGLRNLTTLKEILD-LVKKNHNEDFTLSKIDLNDAKT 530 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + +L T GIFQLES GM + M+ + I DI A SLYRPGP + I Y N KN + Sbjct: 531 FKILREGNTTGIFQLESQGMTNLIIDMKVNNINDISAASSLYRPGPQEMIPDYINNKNNR 590 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 ++ I + +L T GVI+YQEQVMQI QL+ +SL +AD++RRAMGKK E M + Sbjct: 591 -RVSLIDKSLANILLPTYGVIVYQEQVMQILQLVGNFSLGKADIVRRAMGKKQIEYMMEV 649 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 K+ FI+ A N S AV I+ + +FA YGFNKSHA AY+ I Y AW K HYP EF Sbjct: 650 KDEFINNAMANNYSNEKAVAIWNWIEQFAKYGFNKSHAIAYSYIGYWLAWFKAHYPAEFY 709 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV---------NTPCVDFKVGDNRIYYSL 839 A + + N K ++ ++ +QF I+++ PSV +T +++ +NRIY L Sbjct: 710 TALLNGVVGNPSKTSRYIKEVKQFGIEVIKPSVKPAISKKLEDTIKLNYTSSENRIYMPL 769 Query: 840 AAIKGVG---TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 IKG+G T + E ++ FD L +F + +K LN L AG+ DCFGY Sbjct: 770 TLIKGIGRDFIATLNKVYEEHSN-LFDDLNNFFFYMKNKGLNESNYTLLAKAGSFDCFGY 828 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 ++ ++ + D I ++ + N ENI + +K T KI N V E+ Sbjct: 829 NKSTMVANKDFI--FSAMMAFN-----ENI-SLDKQT---KIENLFEEELNEEVESSYEK 877 Query: 957 RVLGFYFSGHPL 968 V GFY S +PL Sbjct: 878 EVFGFYISSNPL 889 >gi|331266518|ref|YP_004326148.1| DNA polymerase III subunit alpha [Streptococcus oralis Uo5] gi|326683190|emb|CBZ00808.1| DNA polymerase III subunit alpha [Streptococcus oralis Uo5] Length = 1033 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 304/970 (31%), Positives = 481/970 (49%), Gaps = 123/970 (12%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 L + YS +E +S+ + +AI D +NL+ A F + GIQP+IG Sbjct: 4 QLDTKTVYSFMESVVSIEKYVQTAKVYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLIG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 ++ + ++D + S L + +GYQ L++L + L G+++ Sbjct: 64 LEMSL-IKDEKNI------------SFRFLALSTKGYQELMKLST---LKMTGRKNWSDF 107 Query: 133 LSWLQEIGT-----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 S L+++ +G+ L G +F S + + T K + Sbjct: 108 TSHLEDVAVIVPYFDGIDQLDLGHD------YFIGVSPDTHQEVFT-KPI---------- 150 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-- 245 LPL N+ ++ED + +L AV + + + D Sbjct: 151 ---------------------LPLYQVNS---FAKEDLQVLQILSAVKDNVSMREVDLHS 186 Query: 246 ------PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 P + KNR P+AL N ++ S+ L LPRF Sbjct: 187 QQGNFLPASDLEARFKNR---------FPQALANLQDLIENVSYQLDPSLK-LPRF---- 232 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ ELR +A GL KG + YR+RL+ EL VI M F YFL+ Sbjct: 233 --NPERPAVEELRARAEKGLS--------DKGLTSAIYRERLNEELAVIHDMGFDDYFLV 282 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D +++ + +G GRGS GS+ AY+L IT IDP+ +L+FERFLN +R +MPD D Sbjct: 283 VWDLLRFGRSQGYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDID 342 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 ID R E IRYV+++YG + VAQI+T+ + AK A+RDV + +P ++ + K I Sbjct: 343 IDIPDLYRPEFIRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKI 402 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 A + +FR+ + + EI++K+EG R S HAAG+V+ D+ L Sbjct: 403 S---FRDTLTTAYEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDL 459 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + +P+ D+ +TQ++ +E GL+K DFLGL+ LT +QK + LA+ GV + + Sbjct: 460 TDYIPL--KYGEDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKI 517 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I +D ET L + T GIFQ E G + L+ +QP E+++A SL RPG D I Sbjct: 518 EEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYI 577 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+GKEK+ + P+++ +L T G+++YQEQVMQ+AQ G+SL +AD+LRRAMG Sbjct: 578 DNFVARKHGKEKVTVLDPVLEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMG 637 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK +EM KE FI+GA K G + A +F ++ KFA YGFN+SHA AY+ +++Q A+ Sbjct: 638 KKNAKEMHLMKEDFITGAVKLGHLEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAY 697 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 KTHYP F + + + DA Q + P ++N+ K+ +IY Sbjct: 698 FKTHYPAIFFQVMLNYSSSD------YIVDALQMGFDVAPLAINSIPYHDKIAKKKIYLG 751 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L AIKG+ + I+E ++PF S+EDF +R+ +L LV G D F +R Sbjct: 752 LKAIKGMPRDLSYWIIE---NRPFSSIEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNR 808 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 ++L +L N+ + + + +FA ++++ + F+ + +F EQ + Sbjct: 809 QKILVNLPNLFVFVEEL--------GGLFADTNYSWTEA---DDFT---EAEKFYKEQEL 854 Query: 959 LGFYFSGHPL 968 +G S HPL Sbjct: 855 IGVGISPHPL 864 >gi|54020612|ref|YP_116107.1| DNA polymerase III DnaE [Mycoplasma hyopneumoniae 232] gi|53987785|gb|AAV27986.1| DNA polymerase III alpha chain 2 [Mycoplasma hyopneumoniae 232] Length = 985 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 245/643 (38%), Positives = 375/643 (58%), Gaps = 29/643 (4%) Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396 ++ RL +E I ++KF+ YFLI+ DF++WA+KN I +GPGRGS +GS+ AY L IT ++ Sbjct: 258 WKARLQYEYETICKLKFTNYFLIIWDFLKWARKNEILIGPGRGSASGSLVAYLLEITSVN 317 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 PL++ L+FERFLNP R++MPD DID RR EVI Y+ KYG + A IITF +L AK+ Sbjct: 318 PLKYDLIFERFLNPQRITMPDIDIDIQDTRRQEVIDYLFEKYGPDHCATIITFSTLAAKS 377 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD--DSRFR---------EARLAD 505 RD+ + +P +Q+++ KLIPN+ +L + D S FR +A Sbjct: 378 VFRDISKTFGIPETQINKNAKLIPNN----ANLSQLYDQKSSEFRRLIEKGDNFKAENNS 433 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 ++ +IS LEG+ R +STHAAGIV+ P+++LVP++ + + +L Q+ ++IE Sbjct: 434 EIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKLVPVH-NSKENLNQIQYAAEFIED 492 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625 L+K D LGLK LT++ L + G K+ + +P ++ T +LL+ T GIFQLES Sbjct: 493 FSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQLPISENSTNNLLSQGKTSGIFQLES 552 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY--NNRKNGKEKIVSIHPLIDPMLK 683 GM +++ + I DIIA++SL+RPGPI I Y N +N EKI P D +++ Sbjct: 553 PGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYTKNKERNNWEKIF---PEYDKIVE 609 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK + ++DK KE FI + G Sbjct: 610 STFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDETKLDKIKENFIKNGTNLGYEP 669 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K Y F ++ E KIK Sbjct: 670 KLVEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAKYSAYFFVELISNENGAQAKIK 729 Query: 804 KFCQDARQFNIQIMPPSVN--TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADK 860 K+ +AR F +I P++N T F G N I+ L +KG+GT + I+ E S + Sbjct: 730 KYVGEARDFGFKIHRPNINFSTENAVFDKGKNTIFLPLLMVKGLGTIAVKTIIDERSKNG 789 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + + DF R+ ++ +E L+FA L FG ++ L + + + +A +V Sbjct: 790 IYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQETLAHNFELLWNHASFV---LN 845 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +K N+ D LEK +ENE + LG F Sbjct: 846 DKDGNLVLTTDNFGLDLEFLEKIPYSQEK-NYENEVKYLGMSF 887 >gi|319744957|gb|EFV97287.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus agalactiae ATCC 13813] Length = 1034 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 313/965 (32%), Positives = 487/965 (50%), Gaps = 109/965 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L + YS ++ + L + K + I I D +NL++A F Q+A A ++PI Sbjct: 2 FAQLDTRTVYSFMDSLVDLKTYVSKSKSLGYQTIGILDHSNLYAAYHFIQEAQKANLRPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G DI +++ ++ + ++T GY+ L++L + + S + Sbjct: 62 VGFSFDIVVENR------------SIEIYCIAINTV-GYKNLLKLST-------AQMSEK 101 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L+ L E EG+ ++ P A ++ L F + G VNL Sbjct: 102 MSLNLLTE-HLEGVQLIL-----PYQDAL--------DQLNLPFDYVIG----VNLTSP- 142 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 Q+ YT P++A + + + D E +L A+ + ++ KD + Sbjct: 143 -----------QIPYTK--PIIAIDTVRYFQKNDIETLQMLHAIRDNVLL--KDAQYASK 187 Query: 251 DHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFILQ--VHAPILPRFIEKECDDIQKEE 307 + LK EM F + PEAL N + ++ PI R I Sbjct: 188 NQELKPCQEMTLAFKERFPEALANLESLVENVTYHFDSDFKLPIFNREIP---------- 237 Query: 308 ENELRNKAVAGLEVR-LAQGAI-AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 AG E+R L Q + +KG + Y++RL+ EL +I +M F YFLIV D ++ Sbjct: 238 ---------AGEELRTLTQNNLKSKGLWSDAYQERLEKELTIIHKMGFDDYFLIVWDLLR 288 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 + + +G GRGS AGS+ +YAL IT IDP++ +L+FERFLN +R SMPD DID Sbjct: 289 FGRSKGYYMGMGRGSAAGSLVSYALNITGIDPVKHNLIFERFLNEERYSMPDIDIDLPDI 348 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-NDPA 484 R E +RYV+N+YG AQI+TF + AK A+RDV + ++ + K I D Sbjct: 349 YRGEFLRYVRNRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGASEYELTNITKKIHFRDNL 408 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 V + +A FR+ + + +I++++EG R S HAAG+V+ D L+ +P Sbjct: 409 TSVYNRNLA----FRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIP 464 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + D+ +TQ++ +E GL+K DFLGL+ LT +QK + + + G+ + L I Sbjct: 465 LKNG--EDMMITQYDASSVEANGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLETIDL 522 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D ET L T GIFQ E SG L ++P+C ED++A SL RPG D + N Sbjct: 523 EDKETLKLFAAGQTKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFIN 582 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+ GKEKI + P+I P+L+ T G+++YQEQVMQIAQ +G++L ++D+LRRAM KK + Sbjct: 583 RRFGKEKIDLVDPVIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSK 642 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM K + F+ GA G + A IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY Sbjct: 643 EMQKMAQSFLEGAVAKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHY 702 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 F + + N + + DA F I PS+NT ++ +IY L IK Sbjct: 703 SDVFY--DIMINYSNSD----YLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIK 756 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 V A I S ++PF S+EDF R+ + + L+ GA D F +R ++ Sbjct: 757 AVPNDLAYWI---SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITS 813 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +LD++ + N+ ++FA T + +E FS +S ++E EQ +LG Sbjct: 814 NLDSLFTFV--------NELGSLFA---DTSYHWLEVEDFS---NSEKYEMEQDILGVGI 859 Query: 964 SGHPL 968 S HPL Sbjct: 860 SPHPL 864 >gi|306829373|ref|ZP_07462563.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus mitis ATCC 6249] gi|304428459|gb|EFM31549.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus mitis ATCC 6249] Length = 1033 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 310/1034 (29%), Positives = 500/1034 (48%), Gaps = 127/1034 (12%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 L + YS +E +S+ + +AI D +NL+ A F + GIQP+IG Sbjct: 4 QLDTKTVYSFMESVVSIEKYVHTAKDYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLIG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 ++ + + + S L + +GYQ L++L + L G+++ Sbjct: 64 LEITLIIDEK-------------AISFRFLALSTKGYQELMKLST---LKMTGRKNWSDF 107 Query: 133 LSWLQEIGT-----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 S L+++ +G+ L G +F S + + T K + Sbjct: 108 TSHLEDVAVIVPYYDGIDQLDLGHD------YFIGVSPDTHQEVFT-KPI---------- 150 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD--- 244 LPL N+ +ED + +L AV + + + D Sbjct: 151 ---------------------LPLYQVNS---FEKEDIQVLQILSAVKDNVSLREVDVHS 186 Query: 245 -----RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 P + KNR P++L N ++ S+ L LPRF Sbjct: 187 QQGIFLPASDLEARFKNR---------FPQSLANLQDLIENVSYQLDPSLK-LPRF---- 232 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ ELR +A QG IAK + Y++RL+ EL VI M F YFL+ Sbjct: 233 --NPERPAVEELRERA--------EQGLIAKELTSVLYQERLNEELAVIHDMGFDDYFLV 282 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D +++ + +G GRGS GS+ AY+L IT IDP+ +L+FERFLN +R +MPD D Sbjct: 283 VWDLLRFGRSQGYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDID 342 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 ID R E IRYV+++YG + VAQI+T+ + AK A+RDV + +P ++ + K I Sbjct: 343 IDIPDLYRPEFIRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKI 402 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 A + +FR+ + + EI++K+EG R S HAAG+V+ D+ L Sbjct: 403 S---FRDTLTTAYEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDL 459 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + +P+ D+ +TQ++ +E GL+K DFLGL+ LT +QK + LA+ GV + + Sbjct: 460 TDYIPL--KYGEDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKI 517 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I +D ET L + T GIFQ E G + L+ ++P E+++A SL RPG D I Sbjct: 518 EEIDLEDSETLALFSAGNTKGIFQFEQPGAIRLLKRVKPQVFEEVVATTSLNRPGASDYI 577 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+GKEK+ + P ++ +L T G+++YQEQVMQ+AQ G+SL +AD+LRRAMG Sbjct: 578 DNFVARKHGKEKVTVLDPTLEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMG 637 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK +EM KE FI+GA K G S+ A +F ++ KFA YGFN+SHA AY+ +++Q A+ Sbjct: 638 KKNAKEMHLMKEDFIAGAVKLGHSEEKANQVFAVMEKFAGYGFNRSHAYAYSSLAFQLAY 697 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 KTHYP F + + + DA Q + P ++N+ K+ +IY Sbjct: 698 FKTHYPAIFFQVMLNYSSSD------YIVDALQMGFDVAPLAINSIPYHDKIAQKKIYLG 751 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L IKG+ + I+E ++PF S+EDF +R+ +L LV G D F +R Sbjct: 752 LKTIKGMPRDFSYWIIE---NRPFSSVEDFVTRLPKNYKKLSLLSPLVELGLFDDFDKNR 808 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 ++L +L N+ + + + +FA ++++ + F+ + +F EQ + Sbjct: 809 QKILVNLPNLFVFVEEL--------GGLFADASYSWTEA---DDFT---EAEKFYKEQEL 854 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 +G S HPL L K + G+++ L V + +T+KG + ++ Sbjct: 855 IGVGISAHPLQT----LAKQALYSTTPIATLTEGSHVTLLVEVQKIKVIRTKKGENMAFL 910 Query: 1019 TFSEPAKEYEANFF 1032 + + + F Sbjct: 911 QVHDSKSKLDVTVF 924 >gi|322374440|ref|ZP_08048954.1| DNA polymerase III, alpha subunit [Streptococcus sp. C300] gi|321279940|gb|EFX56979.1| DNA polymerase III, alpha subunit [Streptococcus sp. C300] Length = 1033 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 310/1023 (30%), Positives = 507/1023 (49%), Gaps = 105/1023 (10%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 L + YS +E +S+ + +AI D +NL+ A F + GI+P+IG Sbjct: 4 QLDTKTVYSFMESVVSIEKYVQMAKEYGYSHLAIMDVDNLYGAYHFLEATRKHGIRPLIG 63 Query: 73 CQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 ++ + ++N+ S+ L + +GYQ L++L + L G++ Sbjct: